Query 007454
Match_columns 603
No_of_seqs 267 out of 1325
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 02:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qm2_A Phosphoserine aminotran 100.0 1.7E-38 6E-43 341.1 16.9 323 109-583 27-384 (386)
2 3e77_A Phosphoserine aminotran 100.0 1.4E-37 4.9E-42 332.8 20.6 327 110-583 14-374 (377)
3 3m5u_A Phosphoserine aminotran 100.0 1E-36 3.5E-41 324.6 22.2 325 108-583 4-359 (361)
4 4hvk_A Probable cysteine desul 100.0 1.7E-31 5.7E-36 279.8 33.4 342 109-583 1-372 (382)
5 3cai_A Possible aminotransfera 100.0 2.9E-31 9.9E-36 282.5 30.4 348 91-580 11-405 (406)
6 1kmj_A Selenocysteine lyase; p 100.0 6.3E-31 2.2E-35 278.4 31.8 361 92-582 4-403 (406)
7 3a9z_A Selenocysteine lyase; P 100.0 1.2E-30 4E-35 280.7 30.8 359 97-583 9-427 (432)
8 4eb5_A Probable cysteine desul 100.0 4.1E-30 1.4E-34 270.4 32.5 342 109-583 1-372 (382)
9 3e9k_A Kynureninase; kynurenin 100.0 6.5E-31 2.2E-35 286.8 26.0 366 93-583 39-460 (465)
10 3lvm_A Cysteine desulfurase; s 100.0 1E-28 3.5E-33 264.2 39.4 348 107-584 21-399 (423)
11 1t3i_A Probable cysteine desul 100.0 2.1E-29 7.1E-34 268.3 33.1 363 92-583 9-412 (420)
12 3vax_A Putative uncharacterize 100.0 5.3E-29 1.8E-33 264.2 24.5 343 107-582 19-398 (400)
13 1eg5_A Aminotransferase; PLP-d 100.0 2.5E-27 8.6E-32 248.9 35.5 341 110-583 3-375 (384)
14 1qz9_A Kynureninase; kynurenin 100.0 3.5E-28 1.2E-32 259.5 29.2 377 76-601 5-414 (416)
15 1elu_A L-cysteine/L-cystine C- 100.0 1.2E-27 4.2E-32 252.2 32.8 350 92-580 3-388 (390)
16 2z9v_A Aspartate aminotransfer 100.0 1.6E-27 5.5E-32 252.1 31.5 340 100-583 2-370 (392)
17 2dr1_A PH1308 protein, 386AA l 100.0 1.5E-26 5.2E-31 243.4 31.5 343 94-584 8-379 (386)
18 2huf_A Alanine glyoxylate amin 99.9 2.2E-26 7.4E-31 243.5 25.5 343 92-583 4-382 (393)
19 2c0r_A PSAT, phosphoserine ami 99.9 3E-26 1E-30 240.6 25.8 324 107-582 2-359 (362)
20 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1E-27 3.4E-32 262.0 13.9 360 84-581 58-455 (456)
21 3ffr_A Phosphoserine aminotran 99.9 3.5E-26 1.2E-30 238.2 24.0 331 109-581 4-361 (362)
22 1vjo_A Alanine--glyoxylate ami 99.9 9.4E-26 3.2E-30 238.9 27.3 341 92-582 19-393 (393)
23 3zrp_A Serine-pyruvate aminotr 99.9 2.3E-25 7.8E-30 233.9 28.6 333 111-584 4-363 (384)
24 3nnk_A Ureidoglycine-glyoxylat 99.9 9.7E-25 3.3E-29 231.9 29.1 348 101-584 6-390 (411)
25 2ch1_A 3-hydroxykynurenine tra 99.9 6.8E-25 2.3E-29 232.2 27.3 341 100-583 10-382 (396)
26 2yrr_A Aminotransferase, class 99.9 1.1E-24 3.7E-29 225.8 27.5 321 111-582 2-351 (353)
27 1iug_A Putative aspartate amin 99.9 1.2E-24 4.2E-29 226.0 27.9 317 111-583 3-347 (352)
28 3ke3_A Putative serine-pyruvat 99.9 1.3E-25 4.5E-30 238.6 20.1 316 156-583 22-375 (379)
29 3isl_A Purine catabolism prote 99.9 3.2E-24 1.1E-28 228.2 28.0 337 109-584 11-390 (416)
30 2bkw_A Alanine-glyoxylate amin 99.9 2.2E-23 7.5E-28 219.2 28.1 331 108-582 4-382 (385)
31 1m32_A 2-aminoethylphosphonate 99.9 7.5E-23 2.6E-27 213.0 31.3 331 110-582 5-363 (366)
32 3f0h_A Aminotransferase; RER07 99.9 1.4E-23 4.7E-28 220.6 25.5 328 109-584 19-374 (376)
33 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 1.1E-23 3.7E-28 220.7 22.1 331 107-583 7-369 (371)
34 3kgw_A Alanine-glyoxylate amin 99.9 9.7E-23 3.3E-27 214.5 29.2 336 108-583 22-387 (393)
35 1w23_A Phosphoserine aminotran 99.9 1.6E-23 5.6E-28 218.7 22.6 323 109-582 3-358 (360)
36 2jis_A Cysteine sulfinic acid 99.9 2.3E-22 7.7E-27 222.9 28.5 189 108-323 108-343 (515)
37 2dgk_A GAD-beta, GADB, glutama 99.9 5.4E-21 1.8E-25 207.9 35.0 308 168-591 79-441 (452)
38 3hbx_A GAD 1, glutamate decarb 99.9 5.9E-21 2E-25 211.2 35.4 330 108-583 56-443 (502)
39 2qma_A Diaminobutyrate-pyruvat 99.9 9.5E-22 3.3E-26 216.7 28.7 354 92-583 83-495 (497)
40 3f9t_A TDC, L-tyrosine decarbo 99.9 9.4E-21 3.2E-25 199.0 33.2 314 109-582 32-396 (397)
41 2fyf_A PSAT, phosphoserine ami 99.9 3.7E-22 1.3E-26 212.8 21.6 321 107-582 38-396 (398)
42 1rv3_A Serine hydroxymethyltra 99.9 2E-22 6.9E-27 221.9 20.1 337 109-583 46-430 (483)
43 1wyu_A Glycine dehydrogenase ( 99.9 8E-22 2.7E-26 213.6 23.5 291 168-581 106-437 (438)
44 2okj_A Glutamate decarboxylase 99.9 1.2E-20 4E-25 208.3 31.8 341 108-583 92-501 (504)
45 2cb1_A O-acetyl homoserine sul 99.9 2.6E-20 8.8E-25 200.3 27.0 303 169-579 55-411 (412)
46 3k40_A Aromatic-L-amino-acid d 99.8 2E-19 6.8E-24 197.7 29.0 265 204-584 197-471 (475)
47 2vi8_A Serine hydroxymethyltra 99.8 4.4E-20 1.5E-24 195.8 21.3 328 109-583 24-386 (405)
48 1gc0_A Methionine gamma-lyase; 99.8 1.9E-20 6.5E-25 200.3 17.8 327 108-580 27-397 (398)
49 1js3_A DDC;, DOPA decarboxylas 99.8 6.1E-19 2.1E-23 193.5 29.0 351 93-583 57-473 (486)
50 1qgn_A Protein (cystathionine 99.8 2.2E-19 7.7E-24 196.0 24.5 147 162-326 106-282 (445)
51 1svv_A Threonine aldolase; str 99.8 1.5E-19 5.1E-24 187.8 21.3 307 107-582 13-356 (359)
52 2bwn_A 5-aminolevulinate synth 99.8 2.3E-20 7.9E-25 198.4 15.4 341 83-582 16-398 (401)
53 1fc4_A 2-amino-3-ketobutyrate 99.8 1.7E-19 5.7E-24 191.6 21.2 320 107-583 43-396 (401)
54 2w8t_A SPT, serine palmitoyltr 99.8 1.5E-18 5.1E-23 187.1 28.9 318 108-584 63-415 (427)
55 1pff_A Methionine gamma-lyase; 99.8 2.5E-20 8.5E-25 193.1 14.3 256 206-580 58-330 (331)
56 3ffh_A Histidinol-phosphate am 99.8 3E-18 1E-22 179.4 28.9 319 84-581 13-363 (363)
57 2rfv_A Methionine gamma-lyase; 99.8 8.9E-20 3E-24 194.7 16.7 177 108-325 26-230 (398)
58 3tqx_A 2-amino-3-ketobutyrate 99.8 3.7E-19 1.3E-23 188.0 20.3 322 108-583 42-395 (399)
59 3get_A Histidinol-phosphate am 99.8 1.4E-18 4.7E-23 182.2 24.3 318 83-581 10-364 (365)
60 4e1o_A HDC, histidine decarbox 99.8 6.7E-18 2.3E-22 185.6 28.9 265 204-583 203-477 (481)
61 2fq6_A Cystathionine beta-lyas 99.8 1.2E-19 4.1E-24 196.3 14.3 141 168-326 80-251 (415)
62 1n8p_A Cystathionine gamma-lya 99.8 2.2E-20 7.4E-25 200.2 8.2 146 162-321 47-219 (393)
63 3vp6_A Glutamate decarboxylase 99.8 1.5E-17 5.2E-22 184.3 31.0 308 167-582 132-503 (511)
64 3mc6_A Sphingosine-1-phosphate 99.8 8.2E-19 2.8E-23 192.7 20.0 284 168-584 105-437 (497)
65 2fnu_A Aminotransferase; prote 99.8 2.1E-18 7E-23 180.8 22.1 334 110-583 4-371 (375)
66 3ly1_A Putative histidinol-pho 99.8 8E-18 2.7E-22 175.3 26.1 304 107-584 16-352 (354)
67 2dkj_A Serine hydroxymethyltra 99.8 2.2E-18 7.6E-23 182.8 20.5 325 112-583 27-387 (407)
68 1v2d_A Glutamine aminotransfer 99.8 3.6E-18 1.2E-22 180.2 22.0 271 173-583 64-370 (381)
69 3mad_A Sphingosine-1-phosphate 99.8 1.4E-17 4.6E-22 184.1 27.2 283 168-583 137-468 (514)
70 3dzz_A Putative pyridoxal 5'-p 99.8 6.9E-18 2.4E-22 177.8 23.4 282 169-583 65-388 (391)
71 1bs0_A Protein (8-amino-7-oxon 99.8 1.4E-18 4.6E-23 183.5 17.6 317 107-580 37-383 (384)
72 1cs1_A CGS, protein (cystathio 99.8 1.4E-17 4.9E-22 176.7 24.7 296 163-581 45-384 (386)
73 1wyu_B Glycine dehydrogenase s 99.8 2E-17 7E-22 181.2 25.9 330 108-583 67-440 (474)
74 3p1t_A Putative histidinol-pho 99.8 1.6E-17 5.6E-22 171.6 23.7 296 107-582 16-335 (337)
75 3frk_A QDTB; aminotransferase, 99.8 1.8E-18 6.3E-23 182.1 16.3 298 170-583 36-367 (373)
76 3euc_A Histidinol-phosphate am 99.8 1.3E-17 4.4E-22 174.9 22.0 305 107-582 30-366 (367)
77 4dq6_A Putative pyridoxal phos 99.8 4.1E-17 1.4E-21 171.8 24.5 324 93-582 22-391 (391)
78 3a2b_A Serine palmitoyltransfe 99.8 3.4E-17 1.2E-21 173.8 23.2 274 170-583 88-391 (398)
79 1vef_A Acetylornithine/acetyl- 99.8 6.5E-17 2.2E-21 171.4 24.3 307 107-581 43-394 (395)
80 2eh6_A Acoat, acetylornithine 99.8 4.7E-17 1.6E-21 170.9 22.7 300 107-581 26-375 (375)
81 2ctz_A O-acetyl-L-homoserine s 99.8 2.2E-16 7.5E-21 170.5 27.6 137 168-321 56-221 (421)
82 1v72_A Aldolase; PLP-dependent 99.7 5.4E-17 1.8E-21 168.5 21.2 308 107-583 7-352 (356)
83 3dyd_A Tyrosine aminotransfera 99.7 6E-17 2.1E-21 174.5 22.1 321 108-583 55-423 (427)
84 3kax_A Aminotransferase, class 99.7 5.2E-17 1.8E-21 170.6 20.9 276 170-581 63-382 (383)
85 3kki_A CAI-1 autoinducer synth 99.7 4.6E-17 1.6E-21 173.8 20.8 268 172-583 106-403 (409)
86 2x3l_A ORN/Lys/Arg decarboxyla 99.7 8.9E-18 3E-22 183.0 15.5 262 170-583 57-352 (446)
87 2a7v_A Serine hydroxymethyltra 99.7 1.3E-16 4.4E-21 176.1 24.6 336 115-583 61-440 (490)
88 1gd9_A Aspartate aminotransfer 99.7 2.3E-17 7.8E-22 174.4 17.8 314 107-583 26-385 (389)
89 1s0a_A Adenosylmethionine-8-am 99.7 5.2E-16 1.8E-20 166.8 28.0 317 107-583 41-423 (429)
90 2o0r_A RV0858C (N-succinyldiam 99.7 5.8E-17 2E-21 173.1 20.1 263 204-591 125-402 (411)
91 1u08_A Hypothetical aminotrans 99.7 1.5E-16 5.2E-21 168.0 23.2 313 108-580 31-386 (386)
92 2z61_A Probable aspartate amin 99.7 1.7E-17 5.8E-22 174.4 15.6 312 107-582 29-369 (370)
93 3n0l_A Serine hydroxymethyltra 99.7 7.1E-17 2.4E-21 171.7 20.4 321 115-583 32-388 (417)
94 3gbx_A Serine hydroxymethyltra 99.7 5.4E-17 1.8E-21 172.6 19.0 321 114-583 36-395 (420)
95 1e5e_A MGL, methionine gamma-l 99.7 1.7E-16 5.8E-21 170.4 22.0 144 169-329 61-234 (404)
96 3cog_A Cystathionine gamma-lya 99.7 3.2E-17 1.1E-21 176.2 16.2 140 172-328 69-237 (403)
97 2c81_A Glutamine-2-deoxy-scyll 99.7 5.1E-17 1.8E-21 174.1 17.7 326 170-583 42-413 (418)
98 3ftb_A Histidinol-phosphate am 99.7 5E-16 1.7E-20 162.0 24.6 266 173-582 64-359 (361)
99 1b9h_A AHBA synthase, protein 99.7 1.1E-16 3.9E-21 169.2 19.9 313 170-583 38-387 (388)
100 3uwc_A Nucleotide-sugar aminot 99.7 1.3E-16 4.3E-21 167.5 20.1 298 170-583 38-370 (374)
101 3g0t_A Putative aminotransfera 99.7 2.8E-16 9.6E-21 168.6 23.2 289 173-583 85-436 (437)
102 3ruy_A Ornithine aminotransfer 99.7 1.3E-15 4.6E-20 161.1 27.8 303 107-581 34-391 (392)
103 1o4s_A Aspartate aminotransfer 99.7 8.5E-17 2.9E-21 170.7 18.6 305 107-582 41-387 (389)
104 3qhx_A Cystathionine gamma-syn 99.7 8.7E-17 3E-21 172.0 18.8 147 157-322 53-229 (392)
105 3b8x_A WBDK, pyridoxamine 5-ph 99.7 6.2E-17 2.1E-21 171.7 17.5 308 170-577 34-389 (390)
106 3fdb_A Beta C-S lyase, putativ 99.7 1.1E-16 3.6E-21 168.1 18.9 270 174-583 62-375 (377)
107 1xi9_A Putative transaminase; 99.7 1.1E-16 3.7E-21 170.8 19.1 275 173-583 81-402 (406)
108 3l8a_A METC, putative aminotra 99.7 1.4E-16 4.8E-21 171.0 20.1 277 169-582 99-420 (421)
109 1bw0_A TAT, protein (tyrosine 99.7 6.1E-16 2.1E-20 165.0 24.5 321 107-583 33-412 (416)
110 2vyc_A Biodegradative arginine 99.7 1.6E-16 5.6E-21 183.9 20.9 298 170-583 205-604 (755)
111 1yiz_A Kynurenine aminotransfe 99.7 4.1E-16 1.4E-20 167.3 22.3 324 108-582 38-427 (429)
112 3cq5_A Histidinol-phosphate am 99.7 2.3E-15 7.7E-20 158.4 27.5 262 173-583 72-367 (369)
113 1o69_A Aminotransferase; struc 99.7 1.5E-16 5.1E-21 169.5 18.2 307 170-584 32-387 (394)
114 3acz_A Methionine gamma-lyase; 99.7 1.7E-15 5.7E-20 161.6 26.2 144 169-329 58-230 (389)
115 3nra_A Aspartate aminotransfer 99.7 2E-16 6.9E-21 167.7 18.6 278 169-583 81-404 (407)
116 3dr4_A Putative perosamine syn 99.7 6E-16 2.1E-20 163.9 21.5 300 170-581 56-390 (391)
117 1mdo_A ARNB aminotransferase; 99.7 4.7E-16 1.6E-20 164.3 20.1 315 170-583 39-385 (393)
118 1d2f_A MALY protein; aminotran 99.7 1.3E-15 4.3E-20 161.2 23.4 274 175-583 69-388 (390)
119 1lc5_A COBD, L-threonine-O-3-p 99.7 6.1E-16 2.1E-20 162.3 20.1 267 173-583 62-359 (364)
120 2zyj_A Alpha-aminodipate amino 99.7 1.5E-16 5.2E-21 168.9 15.4 281 173-583 77-392 (397)
121 2gb3_A Aspartate aminotransfer 99.7 2.1E-16 7.3E-21 168.8 16.7 311 107-583 43-401 (409)
122 1c7n_A Cystalysin; transferase 99.7 7.4E-16 2.5E-20 163.3 20.1 275 173-583 69-392 (399)
123 3hdo_A Histidinol-phosphate am 99.7 7.4E-16 2.5E-20 161.4 19.9 302 107-583 26-354 (360)
124 3h14_A Aminotransferase, class 99.7 5.8E-16 2E-20 163.8 19.2 275 173-583 71-381 (391)
125 3ecd_A Serine hydroxymethyltra 99.7 8.2E-16 2.8E-20 163.7 20.3 325 114-584 38-397 (425)
126 1j32_A Aspartate aminotransfer 99.7 6E-16 2.1E-20 163.4 18.3 243 204-583 129-386 (388)
127 2oqx_A Tryptophanase; lyase, p 99.7 7.2E-16 2.5E-20 167.2 19.3 330 107-583 39-441 (467)
128 2oga_A Transaminase; PLP-depen 99.7 9.4E-16 3.2E-20 163.4 19.8 299 170-583 63-395 (399)
129 3if2_A Aminotransferase; YP_26 99.7 3.1E-16 1.1E-20 168.9 16.3 291 172-585 85-441 (444)
130 2zc0_A Alanine glyoxylate tran 99.7 1.4E-15 4.8E-20 161.6 20.5 286 173-584 78-404 (407)
131 2x5d_A Probable aminotransfera 99.7 6.8E-16 2.3E-20 164.9 17.9 279 173-584 78-398 (412)
132 1c4k_A Protein (ornithine deca 99.7 9E-16 3.1E-20 176.7 20.0 297 170-583 173-565 (730)
133 3e2y_A Kynurenine-oxoglutarate 99.7 1.9E-15 6.6E-20 160.5 20.9 318 107-580 23-409 (410)
134 1fg7_A Histidinol phosphate am 99.7 3.5E-15 1.2E-19 156.7 22.0 262 173-580 61-354 (356)
135 3ele_A Amino transferase; RER0 99.7 2.7E-15 9.2E-20 158.9 20.8 273 174-583 80-395 (398)
136 1vp4_A Aminotransferase, putat 99.7 3.4E-15 1.1E-19 160.5 21.7 286 173-584 88-418 (425)
137 3asa_A LL-diaminopimelate amin 99.7 1.4E-15 4.7E-20 162.0 17.3 320 107-583 33-392 (400)
138 3h7f_A Serine hydroxymethyltra 99.7 4.2E-15 1.4E-19 161.4 21.3 328 114-583 51-413 (447)
139 3fvs_A Kynurenine--oxoglutarat 99.6 6.5E-16 2.2E-20 164.9 14.1 250 204-582 130-420 (422)
140 3fkd_A L-threonine-O-3-phospha 99.6 3E-14 1E-18 148.3 26.2 262 173-584 53-342 (350)
141 2o1b_A Aminotransferase, class 99.6 1.1E-15 3.7E-20 163.4 15.4 274 173-583 88-402 (404)
142 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.6 2.3E-15 7.7E-20 162.7 17.4 104 206-322 127-233 (437)
143 1jg8_A L-ALLO-threonine aldola 99.6 1.6E-15 5.5E-20 157.4 15.6 184 108-325 4-220 (347)
144 1sff_A 4-aminobutyrate aminotr 99.6 6.3E-14 2.1E-18 149.7 28.1 320 107-583 39-423 (426)
145 1ibj_A CBL, cystathionine beta 99.6 1.6E-15 5.4E-20 166.4 15.5 140 170-326 133-300 (464)
146 2dou_A Probable N-succinyldiam 99.6 1.3E-14 4.3E-19 152.7 21.6 272 171-582 64-376 (376)
147 1iay_A ACC synthase 2, 1-amino 99.6 5.6E-15 1.9E-19 158.5 18.9 283 173-583 86-426 (428)
148 1ax4_A Tryptophanase; tryptoph 99.6 4E-15 1.4E-19 161.3 17.9 147 172-326 78-286 (467)
149 3piu_A 1-aminocyclopropane-1-c 99.6 5.5E-15 1.9E-19 159.1 18.6 281 173-583 89-431 (435)
150 3qgu_A LL-diaminopimelate amin 99.6 1E-14 3.5E-19 157.5 20.1 322 107-583 69-439 (449)
151 3a8u_X Omega-amino acid--pyruv 99.6 6.3E-14 2.2E-18 151.6 26.0 323 107-583 48-446 (449)
152 3jtx_A Aminotransferase; NP_28 99.6 3.4E-14 1.2E-18 150.1 23.3 246 203-581 134-395 (396)
153 1b5p_A Protein (aspartate amin 99.6 7.2E-15 2.5E-19 155.6 17.9 269 173-582 71-383 (385)
154 2ord_A Acoat, acetylornithine 99.6 4.2E-14 1.5E-18 150.0 23.8 307 107-582 38-395 (397)
155 1uu1_A Histidinol-phosphate am 99.6 8.1E-15 2.8E-19 152.1 17.6 287 108-580 20-334 (335)
156 3nyt_A Aminotransferase WBPE; 99.6 2.9E-15 9.9E-20 157.6 13.1 294 171-580 36-360 (367)
157 2x5f_A Aspartate_tyrosine_phen 99.6 1.4E-14 4.8E-19 155.5 18.2 279 173-583 91-428 (430)
158 3nx3_A Acoat, acetylornithine 99.6 8.7E-14 3E-18 147.5 24.0 309 107-582 34-393 (395)
159 2po3_A 4-dehydrase; external a 99.6 7.5E-14 2.6E-18 149.8 23.5 308 170-584 52-386 (424)
160 3aow_A Putative uncharacterize 99.6 8.6E-14 2.9E-18 151.3 23.8 284 173-584 121-445 (448)
161 3g7q_A Valine-pyruvate aminotr 99.6 2.3E-14 7.9E-19 152.5 18.6 284 172-584 77-413 (417)
162 3ezs_A Aminotransferase ASPB; 99.6 3.3E-14 1.1E-18 149.2 19.5 268 174-583 63-374 (376)
163 2ez2_A Beta-tyrosinase, tyrosi 99.6 1.5E-13 5.1E-18 148.6 24.7 328 107-583 40-430 (456)
164 3op7_A Aminotransferase class 99.6 5.8E-14 2E-18 147.4 20.6 272 173-583 66-370 (375)
165 2eo5_A 419AA long hypothetical 99.6 4.9E-13 1.7E-17 143.6 28.0 307 107-583 40-417 (419)
166 2r2n_A Kynurenine/alpha-aminoa 99.6 3.1E-13 1.1E-17 145.2 25.8 255 203-584 146-424 (425)
167 1z7d_A Ornithine aminotransfer 99.6 1.5E-12 5.2E-17 140.8 30.1 310 107-583 63-428 (433)
168 3ez1_A Aminotransferase MOCR f 99.6 6.2E-13 2.1E-17 142.2 25.8 288 173-584 73-415 (423)
169 4adb_A Succinylornithine trans 99.6 1.2E-13 4.1E-18 146.4 20.0 311 107-583 37-399 (406)
170 3d6k_A Putative aminotransfera 99.6 6.1E-13 2.1E-17 142.8 25.6 147 173-328 79-279 (422)
171 2oat_A Ornithine aminotransfer 99.5 2.4E-12 8.1E-17 139.6 29.8 307 107-582 74-437 (439)
172 2pb2_A Acetylornithine/succiny 99.5 6E-13 2E-17 143.1 24.7 312 107-583 55-417 (420)
173 3b46_A Aminotransferase BNA3; 99.5 7.2E-14 2.5E-18 151.4 17.3 280 174-580 99-443 (447)
174 3ei9_A LL-diaminopimelate amin 99.5 1.1E-13 3.9E-18 148.5 18.6 321 107-580 56-424 (432)
175 3ju7_A Putative PLP-dependent 99.5 8.9E-14 3E-18 148.0 17.2 302 171-583 37-374 (377)
176 3ppl_A Aspartate aminotransfer 99.5 5E-13 1.7E-17 143.4 22.7 286 173-584 81-420 (427)
177 1yaa_A Aspartate aminotransfer 99.5 3.3E-14 1.1E-18 151.6 11.7 182 107-319 35-267 (412)
178 3meb_A Aspartate aminotransfer 99.5 5.8E-14 2E-18 152.5 13.6 181 107-318 55-289 (448)
179 2cjg_A L-lysine-epsilon aminot 99.5 1.5E-12 5.2E-17 141.4 23.1 275 170-583 101-447 (449)
180 3ndn_A O-succinylhomoserine su 99.5 1.5E-12 5.3E-17 140.4 21.3 138 169-325 80-247 (414)
181 1zod_A DGD, 2,2-dialkylglycine 99.5 1.3E-12 4.5E-17 140.3 20.3 323 107-583 41-431 (433)
182 7aat_A Aspartate aminotransfer 99.5 3E-13 1E-17 143.4 14.8 182 107-321 34-265 (401)
183 3n5m_A Adenosylmethionine-8-am 99.5 9.4E-12 3.2E-16 134.7 26.4 328 107-582 47-450 (452)
184 3i4j_A Aminotransferase, class 99.5 1.9E-12 6.6E-17 139.0 20.8 192 107-329 27-284 (430)
185 3tcm_A Alanine aminotransferas 99.5 3.2E-12 1.1E-16 141.0 22.5 293 174-583 138-493 (500)
186 3dxv_A Alpha-amino-epsilon-cap 99.5 1.4E-11 4.7E-16 132.6 26.9 195 107-330 41-293 (439)
187 1ohv_A 4-aminobutyrate aminotr 99.4 8.2E-12 2.8E-16 136.8 24.6 214 226-583 241-470 (472)
188 3l44_A Glutamate-1-semialdehyd 99.4 6.2E-12 2.1E-16 135.1 22.1 189 107-330 53-293 (434)
189 3fq8_A Glutamate-1-semialdehyd 99.4 8.1E-12 2.8E-16 134.0 21.8 189 107-330 50-290 (427)
190 2ay1_A Aroat, aromatic amino a 99.4 1.5E-13 5.1E-18 145.2 7.6 183 107-320 32-257 (394)
191 1ajs_A Aspartate aminotransfer 99.4 1.9E-12 6.4E-17 137.8 15.8 184 107-320 36-272 (412)
192 3bwn_A AT1G70560, L-tryptophan 99.4 5.8E-12 2E-16 134.3 19.0 275 173-583 71-386 (391)
193 3fsl_A Aromatic-amino-acid ami 99.4 3.1E-12 1.1E-16 135.1 16.5 182 108-321 33-262 (397)
194 4a6r_A Omega transaminase; tra 99.4 1.4E-11 4.9E-16 133.9 21.8 196 107-329 48-311 (459)
195 3tfu_A Adenosylmethionine-8-am 99.4 2E-11 6.9E-16 133.2 22.9 317 107-583 71-452 (457)
196 4e77_A Glutamate-1-semialdehyd 99.4 2.8E-11 9.6E-16 129.9 23.6 189 107-330 51-291 (429)
197 3hmu_A Aminotransferase, class 99.4 4.5E-11 1.6E-15 131.0 25.2 321 107-584 53-452 (472)
198 2q7w_A Aspartate aminotransfer 99.4 3.1E-13 1.1E-17 142.7 7.4 183 107-320 32-260 (396)
199 3gju_A Putative aminotransfera 99.4 1.4E-10 4.7E-15 126.2 27.8 194 107-328 49-312 (460)
200 3dod_A Adenosylmethionine-8-am 99.4 1.3E-10 4.6E-15 125.7 27.5 194 107-330 42-304 (448)
201 2aeu_A Hypothetical protein MJ 99.4 2.4E-12 8.1E-17 136.6 12.9 175 109-329 29-229 (374)
202 4f4e_A Aromatic-amino-acid ami 99.4 1.4E-11 4.7E-16 132.0 18.3 183 107-320 55-283 (420)
203 3ri6_A O-acetylhomoserine sulf 99.4 5.1E-11 1.8E-15 129.3 22.7 137 169-321 81-243 (430)
204 3i5t_A Aminotransferase; pyrid 99.3 2.2E-10 7.4E-15 125.6 27.3 324 107-584 52-454 (476)
205 3nmy_A Xometc, cystathionine g 99.3 3.7E-11 1.3E-15 129.0 20.0 141 164-320 61-228 (400)
206 3k28_A Glutamate-1-semialdehyd 99.3 2.4E-10 8.1E-15 122.8 25.5 188 107-329 51-290 (429)
207 3rq1_A Aminotransferase class 99.3 6.5E-11 2.2E-15 126.2 20.0 121 203-326 140-285 (418)
208 3t18_A Aminotransferase class 99.3 2.8E-11 9.6E-16 128.9 15.9 191 107-328 43-286 (413)
209 2epj_A Glutamate-1-semialdehyd 99.3 5.1E-10 1.8E-14 120.3 24.7 189 107-330 54-294 (434)
210 4ffc_A 4-aminobutyrate aminotr 99.3 3.7E-10 1.3E-14 122.8 23.8 192 107-330 62-317 (453)
211 3lws_A Aromatic amino acid bet 99.3 9.1E-11 3.1E-15 122.1 18.0 142 171-328 48-226 (357)
212 2hox_A ALLIIN lyase 1; cystein 99.3 1.3E-11 4.3E-16 133.6 11.4 274 173-583 103-424 (427)
213 3oks_A 4-aminobutyrate transam 99.2 1.1E-09 3.8E-14 118.9 25.9 196 107-330 59-319 (451)
214 3b1d_A Betac-S lyase; HET: PLP 98.9 6E-13 2E-17 141.0 0.0 119 206-329 130-262 (392)
215 3jzl_A Putative cystathionine 99.2 9.7E-11 3.3E-15 126.3 16.8 113 206-329 129-251 (409)
216 3n75_A LDC, lysine decarboxyla 99.2 3.3E-10 1.1E-14 129.9 21.9 208 170-456 195-443 (715)
217 3f6t_A Aspartate aminotransfer 99.2 1E-10 3.6E-15 130.1 17.2 108 207-323 211-330 (533)
218 3pj0_A LMO0305 protein; struct 99.2 1.3E-10 4.3E-15 121.0 15.8 146 170-328 48-228 (359)
219 3ihj_A Alanine aminotransferas 99.2 1.8E-09 6E-14 119.1 23.8 263 204-583 196-492 (498)
220 3i16_A Aluminum resistance pro 99.2 8.6E-10 2.9E-14 119.6 19.5 159 159-329 65-268 (427)
221 3hvy_A Cystathionine beta-lyas 99.1 7.8E-10 2.7E-14 119.9 18.3 194 94-329 29-268 (427)
222 2cy8_A D-phgat, D-phenylglycin 99.1 4.6E-09 1.6E-13 113.6 22.8 190 107-330 55-292 (453)
223 2e7u_A Glutamate-1-semialdehyd 99.1 3.5E-09 1.2E-13 113.4 21.1 189 107-330 50-289 (424)
224 3ht4_A Aluminum resistance pro 99.0 3.5E-09 1.2E-13 114.9 16.9 114 206-329 135-257 (431)
225 4eu1_A Mitochondrial aspartate 99.0 3.2E-09 1.1E-13 112.9 16.3 111 203-318 145-270 (409)
226 3bc8_A O-phosphoseryl-tRNA(SEC 98.9 1.2E-08 4E-13 111.0 13.2 115 202-322 157-281 (450)
227 2zy4_A L-aspartate beta-decarb 98.7 2E-07 6.9E-12 103.9 16.6 111 208-327 215-337 (546)
228 3ou5_A Serine hydroxymethyltra 98.6 5.6E-06 1.9E-10 89.4 24.9 216 60-324 25-282 (490)
229 3hl2_A O-phosphoseryl-tRNA(SEC 98.4 2.7E-06 9.4E-11 92.2 15.6 107 209-322 182-299 (501)
230 4ao9_A Beta-phenylalanine amin 98.4 2.2E-05 7.6E-10 85.6 22.3 188 107-330 85-310 (454)
231 4atq_A 4-aminobutyrate transam 98.4 0.00029 9.9E-09 76.7 30.4 213 243-583 226-454 (456)
232 4e3q_A Pyruvate transaminase; 98.4 3.2E-05 1.1E-09 84.7 22.5 230 228-586 223-470 (473)
233 2yky_A Beta-transaminase; tran 97.6 1E-07 3.5E-12 104.4 0.0 98 226-330 219-323 (465)
234 4h51_A Aspartate aminotransfer 97.6 0.0037 1.3E-07 67.2 20.7 99 222-325 172-284 (420)
235 4a0g_A Adenosylmethionine-8-am 97.0 0.0014 4.7E-08 76.6 9.8 96 228-329 577-687 (831)
236 3k7y_A Aspartate aminotransfer 95.9 0.072 2.5E-06 56.7 13.7 114 203-320 136-263 (405)
237 4hfl_A Putative cytoplasmic pr 23.1 96 0.0033 28.9 5.0 56 440-516 94-151 (176)
No 1
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=1.7e-38 Score=341.12 Aligned_cols=323 Identities=10% Similarity=0.065 Sum_probs=228.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc---cccchHHHHHHHHHHHHHHHcCC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL---LHGGQESGLESAMKKRIMDFLNI 185 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~---~~g~~~~~~~~~aR~~Ia~~lna 185 (603)
++|||++|++++|++|++++..++.. ..+|++|.+ ..+..+.++++++|++|+++||+
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~-------------------~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~ 87 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCD-------------------WHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNI 87 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC------------------------------------------CCHHHHHHHHHHHTC
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHh-------------------ccccCccccccCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 69999999999999999999876532 236776642 23556688999999999999999
Q ss_pred CC-CcEEEec-c-Cc------------------------hHHHHHHHHHHcCCEEEEEecc-CCccc-cCHHHHHHHHhh
Q 007454 186 SE-NDYVYDY-E-SE------------------------AVEAMIRTSEKRGARVMSAEFS-WPRLR-INSEKLRKMVVS 236 (603)
Q Consensus 186 ~~-~e~vf~~-e-s~------------------------sV~~~~~~a~~~Ga~V~~~~~~-~~~g~-i~~~~L~~~l~~ 236 (603)
++ .+++|.. . ++ +.. +...+++.| +|.+++++ ...|. ++++++++.|.
T Consensus 88 ~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~-~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~- 164 (386)
T 3qm2_A 88 PSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAAS-AIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS- 164 (386)
T ss_dssp CTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHH-HHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC-
T ss_pred CCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHH-HHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC-
Confidence 65 5788831 1 11 222 345567789 99999987 11343 55666655554
Q ss_pred cCCCCCCeeEEEEeCcccccccc-ccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454 237 KGKKKKQRGLFVFPLHSRMTGAR-YPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF 315 (603)
Q Consensus 237 ~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~ 315 (603)
++|+||++++.+|+||++ +|++.|. +|++++|||+|.+|+ .|+|+++++ ++++|+|||+| |+|+
T Consensus 165 -----~~t~lV~~~h~et~tG~~i~pi~~i~----~g~~~~vDa~qs~g~--~pidv~~~~--~~~~s~hK~lG--P~G~ 229 (386)
T 3qm2_A 165 -----DNAAYLHYCPNETIDGIAIDETPDFG----PEVVVTADFSSTILS--APLDVSRYG--VIYAGAQKNIG--PAGL 229 (386)
T ss_dssp -----TTCSCEEECSEETTTTEECCCCCCCC----TTCCEEEECTTTTTS--SCCCGGGCS--EEEEETTTTTC--CTTE
T ss_pred -----CCCcEEEEECCcCCcCEecCchhhhc----CCCEEEEEcccccCC--CCCCccccC--EEEEecccccC--CCcc
Confidence 479999999999999996 9998664 799999999999999 799999875 67899999998 9999
Q ss_pred EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454 316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI 395 (603)
Q Consensus 316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i 395 (603)
|+||+|+++++.++|.. ..+.. |... .+ .. .+.||+|++++++++
T Consensus 230 g~l~v~~~~~~~~~~~~-p~~~~--------~~~~------~~------~~--~~~gTp~v~~i~~l~------------ 274 (386)
T 3qm2_A 230 TLVIVREDLLGKAHESC-PSILD--------YTVL------ND------ND--SMFNTPPTFAWYLSG------------ 274 (386)
T ss_dssp EEEEEEGGGCSCCCTTS-CGGGC--------HHHH------HH------C---------CCSHHHHHH------------
T ss_pred EEEEECHHHHhhhcccC-CcHHH--------HHHH------hh------cC--CCCCCCcHHHHHHHH------------
Confidence 99999999987776531 11110 0000 00 11 357999999999998
Q ss_pred HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC
Q 007454 396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 474 (603)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~ 474 (603)
+|++++.+. |++++.+|.+.|+++|+++|.++. ++..+++.
T Consensus 275 ----------------------------~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~--------~~~~~~~~-- 316 (386)
T 3qm2_A 275 ----------------------------LVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD--------FYRNDVAQ-- 316 (386)
T ss_dssp ----------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS--------SEECCBCG--
T ss_pred ----------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC--------CcccCCCH--
Confidence 699999999 899999999999999999998862 12222221
Q ss_pred CCC-CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454 475 FDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 553 (603)
Q Consensus 475 ~~r-g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 553 (603)
..| +.+++|++++. .++..++++ ++++||.++.|..|
T Consensus 317 ~~rs~~iv~f~~~~~---~~~~~~~~~-L~~~gI~~~~g~~~-------------------------------------- 354 (386)
T 3qm2_A 317 ANRSRMNVPFQLADN---TLDKVFLEE-SFAAGLHALKGHRV-------------------------------------- 354 (386)
T ss_dssp GGBCSSEEEEEESSG---GGHHHHHHH-HHHTTEECCBCCTT--------------------------------------
T ss_pred HHcCceEEEEECCCc---cccHHHHHH-HHHCCCEEeCCCCC--------------------------------------
Confidence 234 56999999862 134445555 57789998877544
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 554 ITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 554 ~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.||+|++.+||.||||+|+++|++|..+
T Consensus 355 ~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 355 VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 135999999999999999999999998754
No 2
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=332.83 Aligned_cols=327 Identities=11% Similarity=0.116 Sum_probs=245.8
Q ss_pred eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc---ccccchHHHHHHHHHHHHHHHcCCC
Q 007454 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ---LLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~---~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
--||.+.++++|++|++++.+++.. ..+|++|. +..+..+.++++++|++|+++||++
T Consensus 14 ~~~n~at~~~~p~~Vl~a~~~~~~~-------------------~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~ 74 (377)
T 3e77_A 14 GTENLYFQSMLPHSVLLEIQKELLD-------------------YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVP 74 (377)
T ss_dssp -CCCEECSCCCCHHHHHHHHHTSSS-------------------GGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccccccccCCCCHHHHHHHHHHHHh-------------------cccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999986542 23677664 3335567899999999999999997
Q ss_pred C-CcEEEecc--Cch-------------------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC
Q 007454 187 E-NDYVYDYE--SEA-------------------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG 238 (603)
Q Consensus 187 ~-~e~vf~~e--s~s-------------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~ 238 (603)
+ .+++|... +.+ -..+.+.+++.|+++.+++++|. +.+++++++..+
T Consensus 75 ~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~-~~~~~~~~~~~i---- 149 (377)
T 3e77_A 75 DNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS-YTKIPDPSTWNL---- 149 (377)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS-SCSCCCGGGCCC----
T ss_pred CCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC-cCCCCChHHhcc----
Confidence 6 57888421 000 11235667778988888888764 334444544333
Q ss_pred CCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454 239 KKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL 318 (603)
Q Consensus 239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L 318 (603)
+++|+||++++.+|+||+++|+ +++++|++++|||+|.+|+ .|+|+++++ ++++|+|||+| |.|+|+|
T Consensus 150 --~~~t~lV~~~h~et~tG~~~pi----i~~~~~~~~~vD~~q~~g~--~~id~~~~~--~~~~s~~K~~g--p~G~g~l 217 (377)
T 3e77_A 150 --NPDASYVYYCANETVHGVEFDF----IPDVKGAVLVCDMSSNFLS--KPVDVSKFG--VIFAGAQKNVG--SAGVTVV 217 (377)
T ss_dssp --CTTCSCEEEESEETTTTEECSS----CCCCTTCCEEEECTTTTTS--SCCCGGGCS--EEEEEGGGTTS--CTTCEEE
T ss_pred --CCCccEEEEeCccCchheEchh----hhccCCCEEEEEcccccCC--CCCchhhcC--EEEEecccccC--CCccEEE
Confidence 3579999999999999999999 4778999999999999999 799999876 69999999998 9999999
Q ss_pred EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454 319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV 398 (603)
Q Consensus 319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~ 398 (603)
|+|+++++.++|.. .++.. |... .+ .. .+.||+|+.++++++
T Consensus 218 ~~~~~~l~~~~~~~-p~~~~--------~~~~------~~------~~--~~~~Tp~v~~i~~l~--------------- 259 (377)
T 3e77_A 218 IVRDDLLGFALREC-PSVLE--------YKVQ------AG------NS--SLYNTPPCFSIYVMG--------------- 259 (377)
T ss_dssp EEETTSCSCCCTTS-CGGGC--------HHHH------HT------TT--TCSSCCCHHHHHHHH---------------
T ss_pred EEcHHHHhhccCCC-Cchhh--------HHHH------hh------cC--CCCCCchHHHHHHHH---------------
Confidence 99999987776532 12211 0000 00 11 357999999999998
Q ss_pred hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454 399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 477 (603)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r 477 (603)
+|++++.+. |+++|.+|.+.|+++|+++|.+++ | +.+ ++..+..|
T Consensus 260 -------------------------~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~-----g---~~~-~~~~~~~r 305 (377)
T 3e77_A 260 -------------------------LVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ-----G---FYV-CPVEPQNR 305 (377)
T ss_dssp -------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST-----T---SEE-CCSCGGGB
T ss_pred -------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC-----C---cee-cCCCHHHc
Confidence 699999999 899999999999999999999874 2 455 33222346
Q ss_pred CC-EEEEEEccCCC-CccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454 478 GP-ALAFNVFDWKR-EKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 555 (603)
Q Consensus 478 g~-ivsFnv~~~~g-~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 555 (603)
.+ +++|++++.++ +.++..++..+ +++||.++.|.. ..+
T Consensus 306 s~~ivsf~~~~~~~~~~~~~~~l~~l-~~~Gi~~~~g~~--------------------------------------~~g 346 (377)
T 3e77_A 306 SKMNIPFRIGNAKGDDALEKRFLDKA-LELNMLSLKGHR--------------------------------------SVG 346 (377)
T ss_dssp CSSEEEEEESSTTCCHHHHHHHHHHH-HHTTEESCBCCT--------------------------------------TTC
T ss_pred CCcEEEEEcCCCCCchhHHHHHHHHH-HHCCcEEeCCCC--------------------------------------cCC
Confidence 55 69999999765 22323344444 468998876631 124
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 556 VVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+|+|++.+||.|||++|+++|++|+.+
T Consensus 347 ~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 347 GIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999765
No 3
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=1e-36 Score=324.61 Aligned_cols=325 Identities=14% Similarity=0.132 Sum_probs=245.1
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcccc---ccchHHHHHHHHHHHHHHHcC
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL---HGGQESGLESAMKKRIMDFLN 184 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~---~g~~~~~~~~~aR~~Ia~~ln 184 (603)
.++|+=++|++++|++|++++..++.. ..+|++|.+. .+..+.++++++|+.|+++||
T Consensus 4 ~~~~~f~pgpt~~~~~V~~a~~~~~~~-------------------~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~ 64 (361)
T 3m5u_A 4 MRKINFSAGPSTLPLEILEQAQKELCD-------------------YQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE 64 (361)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSS-------------------GGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT
T ss_pred cceEeecCCCCCCcHHHHHHHHHHHHh-------------------cccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 468989999999999999999886532 2367777532 255678999999999999999
Q ss_pred CCC-CcEEE-ecc---C---------------------chHHHHHHHHHHcCCEEEEEeccCCccc-cCHHHHHHHHhhc
Q 007454 185 ISE-NDYVY-DYE---S---------------------EAVEAMIRTSEKRGARVMSAEFSWPRLR-INSEKLRKMVVSK 237 (603)
Q Consensus 185 a~~-~e~vf-~~e---s---------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~-i~~~~L~~~l~~~ 237 (603)
+++ .+++| +.. + -+.. +...+++.|++|.+++++|.... ++.++ + |.
T Consensus 65 ~~~~~~v~f~t~~~T~a~n~~~~~~~~~~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~-- 138 (361)
T 3m5u_A 65 LNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTKK-AIKEAQILGVNVKTVASSEESNFDHIPRV--E-FS-- 138 (361)
T ss_dssp CCTTEEEEEESSHHHHHHHHHHHHHCCSSCEEEEECSHHHHH-HHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CC--
T ss_pred CCCCceEEEEcCcHHHHHHHHHHhcCCCCeEEEEeCCHHHHH-HHHHHHHcCCceEEEecccCcCCCcCChh--h-cC--
Confidence 974 58888 311 0 0122 34567788999999999974321 34444 2 54
Q ss_pred CCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454 238 GKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC 317 (603)
Q Consensus 238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~ 317 (603)
++|+||++++.+|+||+++|. +++ .|++++|||+|.+|+ .++|++. +||+++|+|||+| |.|+|+
T Consensus 139 ----~~t~lv~~~~~e~~tG~~~~~----i~~-~~~~~~vD~~q~~g~--~~id~~~--~d~~~~s~~K~~g--p~G~g~ 203 (361)
T 3m5u_A 139 ----DNADYAYICSNNTIYGTQYQN----YPK-TKTPLIVDASSDFFS--RKVDFSN--IALFYGGVQKNAG--ISGLSC 203 (361)
T ss_dssp ----TTSSEEEEESEETTTTEECSS----CCC-CSSCEEEECGGGTTS--SCCCCTT--EEEEEEETTTTSS--CTTCEE
T ss_pred ----CCCCEEEEeCCCCCcceeCCc----ccc-cCCEEEEEcccccCC--CCCCccc--CCEEEEechhccC--CCccEE
Confidence 369999999999999999883 334 499999999999999 7999985 7999999999998 999999
Q ss_pred EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454 318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 397 (603)
Q Consensus 318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~ 397 (603)
||+|+++++.++|...+++.. |... .+ .. .+.||+|++++++++
T Consensus 204 l~~~~~~~~~~~~~~~p~~~~--------~~~~------~~------~~--~~~~Tp~v~~i~~l~-------------- 247 (361)
T 3m5u_A 204 IFIRKDMLERSKNKQIPSMLN--------YLTH------AE------NQ--SLFNTPPTFAIYMFN-------------- 247 (361)
T ss_dssp EEEEHHHHHHHHTCCCCGGGC--------HHHH------HH------TT--TCSSCCCHHHHHHHH--------------
T ss_pred EEEcHHHHhhhcCCCCCceee--------hHHH------hh------cC--CCCCCccHHHHHHHH--------------
Confidence 999999877666532222211 0000 00 01 357999999999998
Q ss_pred HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454 398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 476 (603)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~ 476 (603)
+|++++.+. |+++|.+|.+.|+++|+++|.++. | +.+++++.. .+
T Consensus 248 --------------------------~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~-----g--~~~~~~~~~-~r 293 (361)
T 3m5u_A 248 --------------------------LEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSN-----G--FYKGHADKK-DR 293 (361)
T ss_dssp --------------------------HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTST-----T--SEEESSCGG-GB
T ss_pred --------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCC-----C--eeeccCCHH-Hc
Confidence 699999999 899999999999999999999873 1 246666432 23
Q ss_pred CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454 477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV 556 (603)
Q Consensus 477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 556 (603)
.+.+++|++++..+ ++. .+.+.++++||.++.|..| .+.
T Consensus 294 s~~ivsf~~~~~~~--~~~-~~~~~L~~~gI~~~~g~~~--------------------------------------~g~ 332 (361)
T 3m5u_A 294 SLMNVSFNIAKNKD--LEP-LFVKEAEEAGMIGLKGHRI--------------------------------------LGG 332 (361)
T ss_dssp CSSEEEEEESSCTT--HHH-HHHHHHHHTTEECCBCCTT--------------------------------------TCS
T ss_pred CCeEEEEECCCchh--hhH-HHHHHHHHCCCEEecCCCc--------------------------------------cCe
Confidence 45699999987321 333 3445667889998877332 146
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 557 VTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 557 VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
||+|++.|||.|||++|+++|++|+.+
T Consensus 333 iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 333 IRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998754
No 4
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=1.7e-31 Score=279.77 Aligned_cols=342 Identities=15% Similarity=0.111 Sum_probs=254.3
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~ 188 (603)
+|||||+++++.++.+++++.+.+.. ..+||++.+.++....+.++++|+.+++++|++++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 61 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTE-------------------SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG 61 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHT-------------------SCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHh-------------------hcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 48999999999999999998765431 23566665555556678899999999999999888
Q ss_pred cEEEecc-----------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454 189 DYVYDYE-----------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK 239 (603)
Q Consensus 189 e~vf~~e-----------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~ 239 (603)
+++++.. +.+.......+++.|+++..++++ +++.++.++|++.|..
T Consensus 62 ~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~--- 137 (382)
T 4hvk_A 62 TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG-KYGEVDVSFIDQKLRD--- 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC-TTSCBCHHHHHHHCCT---
T ss_pred eEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC-CCCCcCHHHHHHHhcc---
Confidence 8876432 223333333445679999999988 4788999999999863
Q ss_pred CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454 240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL 318 (603)
Q Consensus 240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L 318 (603)
++++|++++.+|.||.+.|++.+ ++|+++|+ +++|+++..+. .++++..+++|++++|+||+|| |.|+|++
T Consensus 138 ---~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~g--~~g~g~~ 209 (382)
T 4hvk_A 138 ---DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQ--IEVDVEKIGADMLTISSNDIYG--PKGVGAL 209 (382)
T ss_dssp ---TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTT--BCCCHHHHTCSEEEEESGGGTS--CTTCEEE
T ss_pred ---CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCC--CCCCchhcCCCEEEEeHHHhcC--CCceEEE
Confidence 68999999999999999999865 58999999 99999999887 5788877889999999999998 8899999
Q ss_pred EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454 319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV 398 (603)
Q Consensus 319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~ 398 (603)
+++++. .+.+...+|.. ... ++.||++..+++++.
T Consensus 210 ~~~~~~--~~~~~~~~~~~--------------------------~~~--~~~~~~~~~~~~~~~--------------- 244 (382)
T 4hvk_A 210 WIRKEA--KLQPVILGGGQ--------------------------ENG--LRSGSENVPSIVGFG--------------- 244 (382)
T ss_dssp EEETTC--CCCCSSCSSCT--------------------------GGG--TSCSCCCHHHHHHHH---------------
T ss_pred EEcCcc--CcCcccccCCC--------------------------cCc--cccCCcCHHHHHHHH---------------
Confidence 999876 36655544321 011 468899998887765
Q ss_pred hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC
Q 007454 399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG 478 (603)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg 478 (603)
+++++... +++.+.++.+.++++|.+.|.+++ .++++++.. ...+
T Consensus 245 -------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~~-~~~~ 289 (382)
T 4hvk_A 245 -------------------------KAAEITAM-EWREEAERLRRLRDRIIDNVLKIE--------ESYLNGHPE-KRLP 289 (382)
T ss_dssp -------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTST--------TEEECSCSS-SBCT
T ss_pred -------------------------HHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCC--------CeEEeCCcc-ccCC
Confidence 46665543 788999999999999999998753 378888752 2235
Q ss_pred CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454 479 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT 558 (603)
Q Consensus 479 ~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR 558 (603)
.++.|.+++.+ ...+.+.+.++||.++.|++|......+. .++...+. . .....+.||
T Consensus 290 ~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~~~~~~~iR 347 (382)
T 4hvk_A 290 NNVNVRFSYIE-----GESIVLSLDMAGIQASTGSACSSKTLQPS-----HVLMACGL-------K-----HEEAHGTLL 347 (382)
T ss_dssp TEEEEEETTCC-----HHHHHHHHHHTTCBCBCC--------CCC-----HHHHHTTC-------C-----HHHHHTEEE
T ss_pred CEEEEEECCCC-----HHHHHHHHHHCCEEEeeCCccCCCCCcch-----HHHHHcCC-------C-----hhhcCCeEE
Confidence 69999997644 34455666678999999999987643332 22222210 0 001136999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 559 ASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 559 ~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+|++.++|.|||+++++.|++++..
T Consensus 348 l~~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 348 LTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 5
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.9e-31 Score=282.50 Aligned_cols=348 Identities=15% Similarity=0.149 Sum_probs=260.6
Q ss_pred hhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHH
Q 007454 91 YQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESG 170 (603)
Q Consensus 91 ~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~ 170 (603)
.+++++|+ +||.+. ++.+|||+++.++.++.+++++.+.+.. ..+|+++.+.+|.....
T Consensus 11 ~~~~~~r~-~fp~~~-~~~~~ld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 69 (406)
T 3cai_A 11 YDVARVRG-LHPSLG-DGWVHFDAPAGMLIPDSVATTVSTAFRR-------------------SGASTVGAHPSARRSAA 69 (406)
T ss_dssp CCHHHHHH-TCTTTT-SSCEECBGGGCCCCCHHHHHHHHHHHHH-------------------CCSSSCSSSHHHHHHHH
T ss_pred ccHHHHHH-hhhhcC-CCeEEEeCCCcCCCCHHHHHHHHHHHHh-------------------cCCCCCCccHHHHHHHH
Confidence 36789997 699993 2589999999999999999998764321 12456555555555567
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEecc----------------------------CchH-HHHHHHHHHcCCEEEEEeccCC
Q 007454 171 LESAMKKRIMDFLNISENDYVYDYE----------------------------SEAV-EAMIRTSEKRGARVMSAEFSWP 221 (603)
Q Consensus 171 ~~~~aR~~Ia~~lna~~~e~vf~~e----------------------------s~sV-~~~~~~a~~~Ga~V~~~~~~~~ 221 (603)
.++++|+.|++++|+++++++|+.. +.++ ..+...+++.|++++.++++..
T Consensus 70 ~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~ 149 (406)
T 3cai_A 70 VLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE 149 (406)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 8899999999999998888877532 1122 1222233446999999988734
Q ss_pred ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 007454 222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL 300 (603)
Q Consensus 222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dfl 300 (603)
++.++.++|++.|.. ++++|++++.+|.||.++|++.| ++|+++|+++++|+++..++ .++++..+++|++
T Consensus 150 ~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d~~ 221 (406)
T 3cai_A 150 TGELPTWQWESLISK------STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY--RLLDIRETDADVV 221 (406)
T ss_dssp TCCCCGGGHHHHCCT------TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTT--CCCCHHHHCCSEE
T ss_pred cCCcCHHHHHHHhCC------CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCCCchhcCCCEE
Confidence 678899999998863 68999999999999999999865 58999999999999999887 5788777889999
Q ss_pred EEcccccCCCCCCceE-EEEEeCCCCcCcCCCC--CCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 301 ICSFYQIFGENPSGFG-CLFVKKSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 301 v~S~hK~fG~~P~G~G-~L~vkk~~~~~L~p~~--~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
++|+||+|| |. +| ++++++++.+.+++.. +|+. . +.. ++.||+|+.
T Consensus 222 ~~s~~K~~g--~~-~G~~~~~~~~~~~~l~~~~~~~~~~--------~------------------~~~--~~~~t~~~~ 270 (406)
T 3cai_A 222 TVNAHAWGG--PP-IGAMVFRDPSVMNSFGSVSTNPYAT--------G------------------PAR--LEIGVHQFG 270 (406)
T ss_dssp EEEGGGGTS--CS-CEEEEESCHHHHHTSCCCCSCTTCC--------G------------------GGG--GCCSCCCHH
T ss_pred EeehhhhcC--CC-cCeEEEEehHHHhhcCCcccCCCCC--------c------------------ccc--ccCCCccHH
Confidence 999999999 64 89 9999887766666542 1211 0 112 468999999
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC--------------HHHHHHHHHH
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG--------------LTMISRRGRC 443 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG--------------l~~i~~r~~~ 443 (603)
+++++. ++++++..+| ++.+.++.+.
T Consensus 271 ~~~a~~----------------------------------------~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 310 (406)
T 3cai_A 271 LLAGVV----------------------------------------ASIEYLAALDESARGSRRERLAVSMQSADAYLNR 310 (406)
T ss_dssp HHHHHH----------------------------------------HHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------------------------HHHHHHHHhccccccchhhhhhhhHHHHHHHHHH
Confidence 887765 5778777766 7889999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchh
Q 007454 444 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 523 (603)
Q Consensus 444 L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~ 523 (603)
++++|.+.|.+++ .+++++|. ..+++++.|.+++. +...+.+.+.++||.++.|+. .
T Consensus 311 ~~~~l~~~L~~~~--------~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~L~~~gi~v~~g~~-~------- 367 (406)
T 3cai_A 311 VFDYLMVSLRSLP--------LVMLIGRP--EAQIPVVSFAVHKV-----PADRVVQRLADNGILAIANTG-S------- 367 (406)
T ss_dssp HHHHHHHHHHTCT--------TEEECCCC--SSBCSEEEEEETTB-----CHHHHHHHHHHTTEECEECCS-C-------
T ss_pred HHHHHHHHHhcCC--------CeEEcCCc--cccCCEEEEEECCc-----CHHHHHHHHHHCCcEEecCCh-H-------
Confidence 9999999998753 27888774 24677999998753 334455555668999998861 1
Q ss_pred hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
.++...+ .....+.||+|++.++|.|||+++++.|+++
T Consensus 368 -----~~~~~~g--------------~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 368 -----RVLDVLG--------------VNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp -----HHHHHHT--------------TTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred -----HHHHHcC--------------CCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 1121111 0112368999999999999999999998753
No 6
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=6.3e-31 Score=278.42 Aligned_cols=361 Identities=20% Similarity=0.271 Sum_probs=269.0
Q ss_pred hHHHHHHhhccCcCC----CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccc
Q 007454 92 QIDQIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGG 166 (603)
Q Consensus 92 ~vd~iR~~efp~L~~----~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~ 166 (603)
+++.+|+ +||.+.. ++.+|||+++.++.++.+++++.+.+.. ..+|+++. +.++.
T Consensus 4 ~~~~~r~-~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~ 63 (406)
T 1kmj_A 4 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRH-------------------GYAAVHRGIHTLSA 63 (406)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHH-------------------TCCCCSSCSSHHHH
T ss_pred CHHHHHH-hCcccccccCCCceEEecCCccCCCCHHHHHHHHHHHHh-------------------hcCCCCCCcchHHH
Confidence 5788998 6999841 1479999999999999999988764321 12445432 22333
Q ss_pred hHHHHHHHHHHHHHHHcCC-CCCcEEEeccC-----------------------------chH-HHHHHHHHHcCCEEEE
Q 007454 167 QESGLESAMKKRIMDFLNI-SENDYVYDYES-----------------------------EAV-EAMIRTSEKRGARVMS 215 (603)
Q Consensus 167 ~~~~~~~~aR~~Ia~~lna-~~~e~vf~~es-----------------------------~sV-~~~~~~a~~~Ga~V~~ 215 (603)
.....+.+.|++|++++|+ ++++++|+... .++ ..+...++..|+++..
T Consensus 64 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 143 (406)
T 1kmj_A 64 QATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRV 143 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEE
Confidence 3456788999999999999 67888764321 111 2223345566888888
Q ss_pred EeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC
Q 007454 216 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL 294 (603)
Q Consensus 216 ~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~ 294 (603)
++++ +++.++.++|++.|.. ++++|++++.+|.||.++|++.+ ++|+++|+++++|+++..+. .++++..
T Consensus 144 ~~~~-~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~--~~~~~~~ 214 (406)
T 1kmj_A 144 IPLN-PDGTLQLETLPTLFDE------KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH--HPVDVQA 214 (406)
T ss_dssp ECBC-TTSCBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHH
T ss_pred EecC-CCCCcCHHHHHHHhcc------CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCC--CCCcccc
Confidence 8887 3677899999998863 68999999999999999999855 58999999999999999887 5777777
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCc-eeccccc-cccccccccCCCCCCcccCcccccccccC
Q 007454 295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGM-VSLLPAK-KQLWLTDEFSSCETEPEQTSKSKQEKVAA 372 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~-v~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~e~G 372 (603)
+++|++++|+||+|| |.|+|++++++++++.+.+...||+ +...... ...| .. .+.. ++.|
T Consensus 215 ~~~d~~~~s~~K~~g--~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~--~~~~ 277 (406)
T 1kmj_A 215 LDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTW--TK-----------APWR--FEAG 277 (406)
T ss_dssp HTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEE--CC-----------TTGG--GCCS
T ss_pred cCCCEEEEEchhccC--CCCcEEEEEeHHHHhhcCCcccCCCceeeccccccccc--CC-----------Cchh--ccCC
Confidence 789999999999998 8899999999888777776655532 2211000 0001 00 0122 5789
Q ss_pred CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 007454 373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 452 (603)
Q Consensus 373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L 452 (603)
|+++..++++. ++++++.+.+++.+.++.+.+.++|.+.|
T Consensus 278 ~~~~~~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L 317 (406)
T 1kmj_A 278 TPNTGGIIGLG----------------------------------------AALEYVSALGLNNIAEYEQNLMHYALSQL 317 (406)
T ss_dssp SCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH----------------------------------------HHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999887765 57888776789999999999999999999
Q ss_pred hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454 453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE 532 (603)
Q Consensus 453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~ 532 (603)
.+++ .+++++|. .+++++.|.+++. +...+.+.+.++||.++.|..|..... .
T Consensus 318 ~~~~--------~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~-----------~ 370 (406)
T 1kmj_A 318 ESVP--------DLTLYGPQ---NRLGVIAFNLGKH-----HAYDVGSFLDNYGIAVRTGHHCAMPLM-----------A 370 (406)
T ss_dssp TTST--------TEEEESCT---TCCSEEEEEETTC-----CHHHHHHHHHHTTEECEEECTTCHHHH-----------H
T ss_pred hcCC--------CeEEecCC---CcCCEEEEEECCC-----CHHHHHHHHhhCCcEEEeccccchHHH-----------H
Confidence 8763 27888763 3689999998643 344566677788999999998875311 0
Q ss_pred hhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 533 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.. +. .+.||+|++.++|.+|++++++.|+++++
T Consensus 371 ~~----------------g~-~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 403 (406)
T 1kmj_A 371 YY----------------NV-PAMCRASLAMYNTHEEVDRLVTGLQRIHR 403 (406)
T ss_dssp HT----------------TC-SCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hc----------------CC-CCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 00 11 26899999999999999999999999875
No 7
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.98 E-value=1.2e-30 Score=280.75 Aligned_cols=359 Identities=15% Similarity=0.128 Sum_probs=254.9
Q ss_pred HHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHH
Q 007454 97 RAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMK 176 (603)
Q Consensus 97 R~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR 176 (603)
|..+||++ .+.+|||+++.++.++.+++++.+.+.. ..+||++.+..+....+.++++|
T Consensus 9 ~~~~~~~~--~~~~~Ld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~ 67 (432)
T 3a9z_A 9 RGSVESPP--NRKVYMDYNATTPLEPEVIQAVTEAMKE-------------------AWGNPSSSYVAGRKAKDIINTAR 67 (432)
T ss_dssp -----------CCEECBTTTCCCCCHHHHHHHHHHHHH-------------------CCSCTTCSSHHHHHHHHHHHHHH
T ss_pred cccccCCC--CCcEEeeCCccCCCCHHHHHHHHHHHHH-------------------hcCCCccCcHHHHHHHHHHHHHH
Confidence 55679998 7899999999999999999998764321 12556555544555677889999
Q ss_pred HHHHHHcCCCCCcEEEeccC-chHHHHH----------------------------------------------HHHHHc
Q 007454 177 KRIMDFLNISENDYVYDYES-EAVEAMI----------------------------------------------RTSEKR 209 (603)
Q Consensus 177 ~~Ia~~lna~~~e~vf~~es-~sV~~~~----------------------------------------------~~a~~~ 209 (603)
++|++++|+++++++|+... +++..++ ..++..
T Consensus 68 ~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~ 147 (432)
T 3a9z_A 68 ASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQ 147 (432)
T ss_dssp HHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhc
Confidence 99999999988899887652 2322211 122335
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCC----------cEEEEe
Q 007454 210 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEND----------WHILID 278 (603)
Q Consensus 210 Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g----------~~vlvD 278 (603)
|+++..+++++.++.++.++|++.|.. ++++|++++.+|.||.++|++.| ++|+++| +++++|
T Consensus 148 g~~v~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livD 221 (432)
T 3a9z_A 148 VAEVTFVPVSKVNGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTD 221 (432)
T ss_dssp SCEEEEECCCTTTSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred CcEEEEEecCcccCCcCHHHHHHhccC------CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEE
Confidence 889999998754778999999998863 68999999999999999999865 5899988 999999
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC-CcCcCCCCCCCceeccccccccccccccCCCCC
Q 007454 279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST-VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 357 (603)
Q Consensus 279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~-~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~ 357 (603)
+++..+. .++++..+++|++++|+||+|| |. +|+++++++. ...+.+.++||...
T Consensus 222 ea~~~~~--~~~~~~~~~~d~~~~s~~K~~g--~~-~G~~~~~~~~~~~~~~~~~~~~~~~------------------- 277 (432)
T 3a9z_A 222 AAQALGK--RRVDVEDLGVDFLTIVGHKFYG--PR-IGALYVRGVGKLTPLYPMLFGGGQE------------------- 277 (432)
T ss_dssp CTTTTTT--SCCCHHHHCCSEEEEEGGGTTC--CS-CEEEEETTBTTTBCCCCSCCSSCGG-------------------
T ss_pred chhhhCC--cccChhhcCCCEEEEehhHhcC--Cc-ceEEEEccccccCCcCceeecCCcc-------------------
Confidence 9998887 5778777789999999999998 76 9999999876 44566555554210
Q ss_pred CcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHH
Q 007454 358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI 437 (603)
Q Consensus 358 e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i 437 (603)
.. ++.||+|..+++++. ++++++.+ +++++
T Consensus 278 -------~~--~~~~~~~~~~~~a~~----------------------------------------aal~~~~~-~~~~~ 307 (432)
T 3a9z_A 278 -------RN--FRPGTENTPMIAGLG----------------------------------------KAADLVSE-NCETY 307 (432)
T ss_dssp -------GG--TSCSCCCHHHHHHHH----------------------------------------HHHHHHHH-HHHHH
T ss_pred -------cc--ccCCCcCHHHHHHHH----------------------------------------HHHHHHHh-hHHHH
Confidence 11 467899988877665 57777665 68899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC-CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccC
Q 007454 438 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHH 516 (603)
Q Consensus 438 ~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~-~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~ 516 (603)
.++.+.++++|.+.|.++. |. .+.+++|... ...+.+++|.+.+.. ++...+...+ .+|.++.|..|.
T Consensus 308 ~~~~~~~~~~l~~~L~~~~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~G~~~~ 376 (432)
T 3a9z_A 308 EAHMRDIRDYLEERLEAEF-----GK-RIHLNSRFPGVERLPNTCNFSIQGSQ---LRGYMVLAQC--QTLLASVGASCH 376 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----GG-GEEESSCCTTCCBCTTEEEEEECSTT---CCHHHHHHHC--SSEECBSSCGGG
T ss_pred HHHHHHHHHHHHHHHHhcc-----CC-cEEEeCCCCcccCCCCEEEEEeCCCC---CcHHHHHHHh--cCeEEecccccc
Confidence 9999999999999998753 11 2566676311 123569999998642 1223333322 489999999997
Q ss_pred ccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 517 IWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 517 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+...... ...+...+. . .....+.||+|++.++|.|||+++++.|++++.+
T Consensus 377 ~~~~~~~----~~~l~~~g~-------~-----~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 377 SDHEDRP----SPVLLSCGI-------P-----VDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp GGGTTSC----CHHHHHTTC-------C-----HHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCc----cHHHHhcCC-------C-----ccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 7432110 122222210 0 0011369999999999999999999999998753
No 8
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.98 E-value=4.1e-30 Score=270.36 Aligned_cols=342 Identities=15% Similarity=0.104 Sum_probs=251.5
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~ 188 (603)
++|||++++++.++.+++++.+.+.. ..+|+++.+.++....+.+++.|+.|++++|++++
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~ 61 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTE-------------------SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG 61 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHT-------------------SCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHh-------------------ccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 48999999999999999998765321 12566654444444567889999999999999888
Q ss_pred cEEEeccC-----------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454 189 DYVYDYES-----------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK 239 (603)
Q Consensus 189 e~vf~~es-----------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~ 239 (603)
+++++... .++......+++.|++++.+++++ ++.++.++|++.|..
T Consensus 62 ~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~--- 137 (382)
T 4eb5_A 62 TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YGEVDVSFIDQKLRD--- 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TSCBCHHHHHHHCCT---
T ss_pred eEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CCccCHHHHHHHhcC---
Confidence 88775321 112122222234688899998874 788999999998863
Q ss_pred CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454 240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL 318 (603)
Q Consensus 240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L 318 (603)
++++|++++.+|.||.++|++.+ ++|+++|++ ++|+++..+. .++++..+++|++++|+||+|| |.|+|++
T Consensus 138 ---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~--~~~~~~~~~~di~~~s~sK~~g--~~g~G~~ 209 (382)
T 4eb5_A 138 ---DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQ--IEVDVEKIGADMLTISSNDIYG--PKGVGAL 209 (382)
T ss_dssp ---TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTT--BCCCHHHHTCSEEEEETGGGTC--CSSCEEE
T ss_pred ---CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCC--cccCccccCCCEEEeehHHhcC--CCceEEE
Confidence 58999999999999999999865 589999999 9999998887 5677776789999999999998 8899999
Q ss_pred EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454 319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV 398 (603)
Q Consensus 319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~ 398 (603)
+++++. .+.+...||... .. +..||++...++++.
T Consensus 210 ~~~~~~--~l~~~~~~~~~~--------------------------~~--~~~~~~~~~~~~~~~--------------- 244 (382)
T 4eb5_A 210 WIRKEA--KLQPVILGGGQE--------------------------NG--LRSGSENVPSIVGFG--------------- 244 (382)
T ss_dssp EEETTC--CCCCSSCSSCTG--------------------------GG--TSCSCCCHHHHHHHH---------------
T ss_pred EEcccc--ccCceecCCCcc--------------------------cc--ccCCCccHHHHHHHH---------------
Confidence 999874 244443332100 11 356888888776654
Q ss_pred hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC
Q 007454 399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG 478 (603)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg 478 (603)
++++++.+ +++.+.++.+.+++++.+.|.+++ .+++++|.. ...+
T Consensus 245 -------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~~-~~~~ 289 (382)
T 4eb5_A 245 -------------------------KAAEITAM-EWREEAERLRRLRDRIIDNVLKIE--------ESYLNGHPE-KRLP 289 (382)
T ss_dssp -------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTST--------TEEECSCSS-SBCT
T ss_pred -------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhCC--------CeEEeCCcc-cCCC
Confidence 57777655 688899999999999999998752 277887642 2347
Q ss_pred CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454 479 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT 558 (603)
Q Consensus 479 ~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR 558 (603)
+++.|.+++.+ ...+.+.+.++||.++.|..|.+....++ .++...+. . .....+.||
T Consensus 290 ~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~~~~~~~iR 347 (382)
T 4eb5_A 290 NNVNVRFSYIE-----GESIVLSLDMAGIQASTGSACSSKTLQPS-----HVLMACGL-------K-----HEEAHGTLL 347 (382)
T ss_dssp TEEEEEETTSC-----HHHHHHHHHHHTCBCBCCCGGGTSSCCCC-----HHHHHTTC-------C-----HHHHTTEEE
T ss_pred CEEEEEeCCcC-----HHHHHHHHHHCCEEEeccccccCCCCccc-----HHHHHcCC-------C-----hhccCCeEE
Confidence 79999987533 33444444568999999999877543332 22222110 0 001236999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 559 ASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 559 ~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+|++.++|.|||+++++.|+++++.
T Consensus 348 i~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 348 LTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 9
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.97 E-value=6.5e-31 Score=286.75 Aligned_cols=366 Identities=11% Similarity=0.069 Sum_probs=257.0
Q ss_pred HHHHHHhhccCcC--------------CCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccc
Q 007454 93 IDQIRAKEYYQLS--------------LSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNL 158 (603)
Q Consensus 93 vd~iR~~efp~L~--------------~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~ 158 (603)
+..+|+ +|+... .++.+|||+++.++.|+.+.+++.+.+.. |.. ...+.
T Consensus 39 l~~~r~-~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l~~---------~~~-------~~~~~ 101 (465)
T 3e9k_A 39 LRHFRE-CFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDK---------WAK-------IAAYG 101 (465)
T ss_dssp TGGGGG-GEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHHHH---------HHH-------HGGGG
T ss_pred HHHHHH-hcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHHHH---------HHh-------hCCcc
Confidence 445776 587663 13679999999999999887765543211 000 00111
Q ss_pred CccccccchHHHHHHHHHHHHHHHcCCCCCcEEEecc----------------------------CchHHH-HHHHHHHc
Q 007454 159 KTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYE----------------------------SEAVEA-MIRTSEKR 209 (603)
Q Consensus 159 ~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~e----------------------------s~sV~~-~~~~a~~~ 209 (603)
+.... .......+++|+++++++|+++++++|+.. +.+... +...++..
T Consensus 102 ~~~~~--~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~ 179 (465)
T 3e9k_A 102 HEVGK--RPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLH 179 (465)
T ss_dssp GTSSS--SCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHT
T ss_pred cccCC--ccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHc
Confidence 11000 012244567899999999999999977532 122222 23345667
Q ss_pred CCEE-----EEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC
Q 007454 210 GARV-----MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG 283 (603)
Q Consensus 210 Ga~V-----~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~ 283 (603)
|+++ ...+.+ .++.++.++|+++|... ++++++|++++.+|.||.++|++.| ++|+++|++|++|++|..
T Consensus 180 G~~~~~~~v~~~~~~-~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~ 255 (465)
T 3e9k_A 180 GLNIEESMRMIKPRE-GEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAV 255 (465)
T ss_dssp TCCHHHHEEEECCCT-TCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCcceeeeEEEecCC-CCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhc
Confidence 8774 334444 36778999999999731 1269999999999999999999966 589999999999999999
Q ss_pred CCCCCCCCCCCCCCcEEEEcccccC-CCCCCceEEEEEeCCCCcCcCCCCCC--Cceeccc-cccccccccccCCCCCCc
Q 007454 284 PKDMDSFGLSLVRPDFLICSFYQIF-GENPSGFGCLFVKKSTVPILVDNTSS--GMVSLLP-AKKQLWLTDEFSSCETEP 359 (603)
Q Consensus 284 ~~~m~~ldls~~~~Dflv~S~hK~f-G~~P~G~G~L~vkk~~~~~L~p~~~g--G~v~~~~-~~~~~~~~~~~~~~~~e~ 359 (603)
|. .++++..+++||+++|+||++ |+ |.|+|+++++++..+.+.+...| |.....+ .....+. ..
T Consensus 256 g~--~~~~~~~~~~D~~~~s~~K~l~~g-p~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~- 323 (465)
T 3e9k_A 256 GN--VELYLHDWGVDFACWCSYKYLNAG-AGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQ--------LI- 323 (465)
T ss_dssp TT--SCCCHHHHTCCEEEECSSSTTCCC-TTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCC--------BC-
T ss_pred CC--cCCchhhcCCCEEEECcccccccC-CCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcC--------cC-
Confidence 98 789999999999999999998 34 88999999999988778776555 1100000 0000000 00
Q ss_pred ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454 360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 439 (603)
Q Consensus 360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~ 439 (603)
..+.+ ++.||+|+.+++++. ++++.++..|++.+.+
T Consensus 324 --~~~~~--~~~gt~~~~~~~a~~----------------------------------------aal~~~~~~~~~~~~~ 359 (465)
T 3e9k_A 324 --PGVCG--FRISNPPILLVCSLH----------------------------------------ASLEIFKQATMKALRK 359 (465)
T ss_dssp --SSGGG--GCCSCCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHHH
T ss_pred --CChHH--hccCCccHHHHHHHH----------------------------------------HHHHHHHHcCHHHHHH
Confidence 01233 789999999998876 6889888889999999
Q ss_pred HHHHHHHHHHHHHhcCCCC--CCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCc
Q 007454 440 RGRCLINWLVNALMKLQHP--NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI 517 (603)
Q Consensus 440 r~~~L~~~L~~~L~~L~h~--~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~ 517 (603)
+.+.+++++.+.|.++... ...+.+.+++++|.....++++++|.++ .++.. +.+.+.++||.++.+
T Consensus 360 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~-----l~~~L~~~Gi~v~~~----- 428 (465)
T 3e9k_A 360 KSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VPNKD-----VFQELEKRGVVCDKR----- 428 (465)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-CTTCC-----HHHHHHTTTEECEEE-----
T ss_pred HHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-CCHHH-----HHHHHHHCCEEEecC-----
Confidence 9999999999999875210 0001245899998654567999999997 33332 344445679987611
Q ss_pred cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454 518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..++||+|+ ++++|++||+++++.|+++++.
T Consensus 429 -----------------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 429 -----------------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp -----------------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred -----------------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 125999999 8999999999999999998865
No 10
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=1e-28 Score=264.23 Aligned_cols=348 Identities=17% Similarity=0.108 Sum_probs=259.0
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHHHHHHHHHHHHHHcCC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNI 185 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna 185 (603)
++.||||+++.++.++.+++++.+.+... ..++||++ .+.++....+.++++|+.+++++|+
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~ 83 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMD-----------------GTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 83 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTT-----------------SCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhc-----------------ccccCCCccccchhHHHHHHHHHHHHHHHHHcCC
Confidence 67899999999999999999988764310 02356666 4445555678889999999999999
Q ss_pred CCCcEEEeccC-----------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhh
Q 007454 186 SENDYVYDYES-----------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 236 (603)
Q Consensus 186 ~~~e~vf~~es-----------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~ 236 (603)
++++++|+... .+.......++..|+++..+++++ ++.++.++|++.|..
T Consensus 84 ~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~ 162 (423)
T 3lvm_A 84 DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NGIIDLKELEAAMRD 162 (423)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHCCT
T ss_pred CCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CCccCHHHHHHhcCC
Confidence 98899875321 112112222355688999998884 788999999999863
Q ss_pred cCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454 237 KGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF 315 (603)
Q Consensus 237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~ 315 (603)
++++|+++..+|.||.++|++.| ++|+++|+++++|+++..+. .++++..+++|++++|+||+|| |.|+
T Consensus 163 ------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~sK~~g--~~g~ 232 (423)
T 3lvm_A 163 ------DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK--LPIDLSQLKVDLMSFSGHKIYG--PKGI 232 (423)
T ss_dssp ------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTSCCSEEEEESTTTTS--CSSC
T ss_pred ------CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCC--CCcChhhcCCCEEEechHHhcC--CCCe
Confidence 68999999999999999999865 58999999999999999887 5788888999999999999998 7799
Q ss_pred EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454 316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI 395 (603)
Q Consensus 316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i 395 (603)
|+++++++....+.+...||... .. +..+|++...++++.
T Consensus 233 G~~~~~~~~~~~~~~~~~~~~~~--------------------------~~--~~~~~~~~~~~~a~~------------ 272 (423)
T 3lvm_A 233 GALYVRRKPRVRIEAQMHGGGHE--------------------------RG--MRSGTLPVHQIVGMG------------ 272 (423)
T ss_dssp EEEEECBTTBCCCCCSSCSSCTT--------------------------TT--TCCSCCCHHHHHHHH------------
T ss_pred EEEEEeccccCCCCccccCCccc--------------------------cc--ccCCCCCHHHHHHHH------------
Confidence 99999998887777655543210 11 357888888877765
Q ss_pred HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC
Q 007454 396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF 475 (603)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~ 475 (603)
.+++.+... ++.+.++.+.+.++|.+.|.+++ .++++++.. .
T Consensus 273 ----------------------------~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~~-~ 314 (423)
T 3lvm_A 273 ----------------------------EAYRIAKEE-MATEMERLRGLRNRLWNGIKDIE--------EVYLNGDLE-H 314 (423)
T ss_dssp ----------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTST--------TEEEESCST-T
T ss_pred ----------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC--------CEEEeCCcc-c
Confidence 467766543 78899999999999999998763 378888753 2
Q ss_pred CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454 476 DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 555 (603)
Q Consensus 476 ~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 555 (603)
..+.++.|.+.+.+ ...+.+.+.+ |.++.|.+|.++..... .++...+. . .....+
T Consensus 315 ~~~~~~~~~~~~~~-----~~~l~~~l~~--i~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~~~~~~ 370 (423)
T 3lvm_A 315 GAPNILNVSFNYVE-----GESLIMALKD--LAVSSGSACTSASLEPS-----YVLRALGL-------N-----DELAHS 370 (423)
T ss_dssp BCTTEEEEEETTSC-----HHHHHHHTTT--EECBCCCC-----CCCC-----HHHHHHTC-------C-----HHHHHT
T ss_pred cCCCeEEEEeCCCC-----HHHHHHHHhh--heeccCccccCCCcccc-----HHHHHhCC-------C-----ccccCc
Confidence 34679999996543 3445555544 99999999987644332 22222210 0 011136
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 556 VVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
.||+|++..+|.|||+++++.|++++++-
T Consensus 371 ~iRi~~~~~~t~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 371 SIRFSLGRFTTEEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
No 11
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=2.1e-29 Score=268.35 Aligned_cols=363 Identities=18% Similarity=0.257 Sum_probs=267.4
Q ss_pred hHHHHHHhhccCcCCCC------ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccc
Q 007454 92 QIDQIRAKEYYQLSLSN------HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLH 164 (603)
Q Consensus 92 ~vd~iR~~efp~L~~~~------~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~ 164 (603)
.+.++|+ +||.+ .+ .+|||++..++.|+.+++++.+.+.. ..+|+++ .+.|
T Consensus 9 ~~~~~r~-~f~~~--~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~y 66 (420)
T 1t3i_A 9 LAATVRQ-DFPIL--NQEINGHPLVYLDNAATSQKPRAVLEKLMHYYEN-------------------DNANVHRGAHQL 66 (420)
T ss_dssp HHHHHGG-GCGGG--SCEETTEECEECBTTTCCCCCHHHHHHHHHHHHH-------------------TCCCC--CCSHH
T ss_pred HHHHHHH-hCCcc--ccccCCCceEEecCCccCCCCHHHHHHHHHHHHh-------------------ccCCCCcccchH
Confidence 5578887 69998 44 79999999999999999987764321 1245543 3334
Q ss_pred cchHHHHHHHHHHHHHHHcCC-CCCcEEEeccC-chH-----------------------------HHHHHHHHHcCCEE
Q 007454 165 GGQESGLESAMKKRIMDFLNI-SENDYVYDYES-EAV-----------------------------EAMIRTSEKRGARV 213 (603)
Q Consensus 165 g~~~~~~~~~aR~~Ia~~lna-~~~e~vf~~es-~sV-----------------------------~~~~~~a~~~Ga~V 213 (603)
+......+++.|+.|++++|. ++++++|+... +++ ..+...++..|+++
T Consensus 67 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~ 146 (420)
T 1t3i_A 67 SVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVL 146 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEE
Confidence 444457788999999999999 77888765321 111 11233445568888
Q ss_pred EEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCC
Q 007454 214 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGL 292 (603)
Q Consensus 214 ~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl 292 (603)
..++++ .++.++.++|++.|.. ++++|++++.+|.||.++|++.+ ++|+++|+++++|+++..+. .++++
T Consensus 147 ~~v~~~-~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~ 217 (420)
T 1t3i_A 147 KFVQLD-EQESFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH--YPLDV 217 (420)
T ss_dssp EEECBC-TTSSBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCH
T ss_pred EEeccC-CCCCcCHHHHHHhhCC------CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCC--ccCch
Confidence 888887 4678999999998863 68999999999999999999865 58999999999999999887 46777
Q ss_pred CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCC-ceeccccccccccccccCCCCCCcccCccccccccc
Q 007454 293 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 371 (603)
Q Consensus 293 s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~ 371 (603)
..+++|++++|+||+|| |.|+|++++++++++.+.+...+| ...........| .. .+.+ ++.
T Consensus 218 ~~~~~di~~~s~sK~~~--~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~--~~~ 280 (420)
T 1t3i_A 218 QLIDCDWLVASGHKMCA--PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT--GE-----------LPHK--FEA 280 (420)
T ss_dssp HHHTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE--CC-----------TTGG--GCC
T ss_pred hhcCCCEEEEehhhhcC--CCceEEEEEchHHHhhcCceecCCCccccccccccCC--CC-----------chhh--ccC
Confidence 77889999999999998 789999999988877776654443 322110000001 00 0122 567
Q ss_pred CCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454 372 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 451 (603)
Q Consensus 372 GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~ 451 (603)
||+++..++++. .+++++.+.|++.+.++.+.+.+++.+.
T Consensus 281 ~~~~~~~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (420)
T 1t3i_A 281 GTPAIAEAIALG----------------------------------------AAVDYLTDLGMENIHNYEVELTHYLWQG 320 (420)
T ss_dssp SSCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHH----------------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 899988887765 4788877778999999999999999999
Q ss_pred HhcCCCCCCCCCceEEEeCCCCCC-CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454 452 LMKLQHPNTEGNALVKIYGPKIRF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 530 (603)
Q Consensus 452 L~~L~h~~~~g~plv~Iygp~~~~-~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~ 530 (603)
|.+++ .+++++|.... .+++++.|.+++. +...+.+.+.++||.++.|.+|.....
T Consensus 321 L~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~~~~~~~~~~---------- 377 (420)
T 1t3i_A 321 LGQIP--------QLRLYGPNPKHGDRAALASFNVAGL-----HASDVATMVDQDGIAIRSGHHCTQPLH---------- 377 (420)
T ss_dssp HHTCT--------TEEEESCCGGGSCBCSEEEEEETTB-----CHHHHHHHHHTTTEECBCSCTTCHHHH----------
T ss_pred HHhCC--------CeEEeCCCccccccCCEEEEEECCC-----CHHHHHHHHHHCCeEEeeccccchHHH----------
Confidence 99863 27888764211 2589999998752 344566777788999999988864211
Q ss_pred HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
... +. .+.||+|++.++|.+||+++++.|+++++.
T Consensus 378 -~~~----------------g~-~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 378 -RLF----------------DA-SGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp -HHT----------------TC-CCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -Hhc----------------CC-CCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 000 01 258999999999999999999999998764
No 12
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.97 E-value=5.3e-29 Score=264.18 Aligned_cols=343 Identities=15% Similarity=0.025 Sum_probs=235.2
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
++.||||+++.++.++.+++++.+.+.. .++|+++.+.++....+.++++|+.+++++|++
T Consensus 19 ~~~iyld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~ 79 (400)
T 3vax_A 19 SHMTYLDAAATTRVDQRVADIVLHWMTA-------------------EFGNAGSRHEYGIRAKRGVERAREYLASTVSAE 79 (400)
T ss_dssp ---CCCCCCCCSSSCHHHHHHHHHHHHH-------------------HHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEecCCCCCCCCHHHHHHHHHHHHh-------------------ccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC
Confidence 6789999999999999999998764321 235666655455556788899999999999999
Q ss_pred CCcEEEeccC------------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhh
Q 007454 187 ENDYVYDYES------------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 236 (603)
Q Consensus 187 ~~e~vf~~es------------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~ 236 (603)
+++++++... .+.......+++.|+++..+++++ ++.++.++|++.|..
T Consensus 80 ~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~ 158 (400)
T 3vax_A 80 PDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SGRISVEGVMERLRP 158 (400)
T ss_dssp GGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TCCCCHHHHHTTCCT
T ss_pred CCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CCCcCHHHHHHhcCC
Confidence 8888775321 111112223344688888888874 788999999988863
Q ss_pred cCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454 237 KGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF 315 (603)
Q Consensus 237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~ 315 (603)
++++|++++.+|.||.++|++.| ++|+++|+++++|+++..+. .++++..+ +|++++|+||++| |.|+
T Consensus 159 ------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~-~d~~~~s~~K~~g--~~g~ 227 (400)
T 3vax_A 159 ------DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGK--VPGDLTTP-IDMISISGHKIGA--PKGV 227 (400)
T ss_dssp ------TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTT--SGGGGGSC-CSEEEEETGGGTS--CSSC
T ss_pred ------CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCC--CCcChhhc-CcEEEEeHHHhCC--CCce
Confidence 68999999999999999999865 58999999999999999887 57888877 9999999999988 8899
Q ss_pred EEEE-EeCCCC----cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcc
Q 007454 316 GCLF-VKKSTV----PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL 390 (603)
Q Consensus 316 G~L~-vkk~~~----~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~ 390 (603)
|+++ ++++.+ ..+.+...+|.. ... +..||++..+++++.
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~--~~~~~~~~~~~~a~~------- 272 (400)
T 3vax_A 228 GALVTRRREEMDDERVPLEPIMFGGGQ--------------------------ERK--LRPGTLPVPLIMGLA------- 272 (400)
T ss_dssp EEEEECBCSSSTTCBCCCCCSSCSSCT--------------------------GGG--TSCSCCCHHHHHHHH-------
T ss_pred EEEEEecchhccccccccCceecCCCc--------------------------eee--eecCCCCHHHHHHHH-------
Confidence 9999 988322 234443333221 011 467889988887765
Q ss_pred ccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeC
Q 007454 391 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYG 470 (603)
Q Consensus 391 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iyg 470 (603)
.+++.+.+ +++.+.++.+.++++|.+.|. +. .+++++
T Consensus 273 ---------------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~-~~--------~~~~~~ 309 (400)
T 3vax_A 273 ---------------------------------EAAKIFEA-EHAQWQVAAQDLRSRLLAGLA-ST--------SFQVNG 309 (400)
T ss_dssp ---------------------------------HHHHHHHH-SHHHHHHHHHHHHHHHHHHHT-TT--------TCEECS
T ss_pred ---------------------------------HHHHHHHh-hHHHHHHHHHHHHHHHHHhhC-CC--------CEEEeC
Confidence 57776655 789999999999999999998 42 267777
Q ss_pred CCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCC
Q 007454 471 PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKA 550 (603)
Q Consensus 471 p~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 550 (603)
|.. ...+.++.|.+++.+ ...+.+.+. +||.++.|..|......+. .++...+. . .
T Consensus 310 ~~~-~~~~~~~~~~~~~~~-----~~~l~~~L~-~gi~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~ 365 (400)
T 3vax_A 310 DQD-HVVPHILNLSFEDVD-----AEAFLVTLK-DLVAVATGSASTSASFTPS-----HVLRAMGL-------P-----E 365 (400)
T ss_dssp CTT-SBCTTEEEEECTTCC-----HHHHHHHHH-HHHHHTTTTEEEEEEECCH-----HHHHTTTC-------C-----H
T ss_pred Ccc-cCCCCEEEEEeCCCC-----HHHHHHHHh-cCcEEEecccccCCCCCcc-----HHHHHcCC-------C-----c
Confidence 653 234679999988643 344555555 8999999999987643332 22222210 0 0
Q ss_pred CCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 007454 551 NLGITVVTASL-GYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 551 ~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~ 582 (603)
....+.||+|+ +.++|.|||+++++.|+++++
T Consensus 366 ~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 366 EAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp HHHTSEEEEEEEEC-------------------
T ss_pred cccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 11137999999 999999999999999998875
No 13
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.96 E-value=2.5e-27 Score=248.87 Aligned_cols=341 Identities=18% Similarity=0.166 Sum_probs=240.2
Q ss_pred eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCc
Q 007454 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND 189 (603)
Q Consensus 110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e 189 (603)
+|||+++.++.++.+++++.+.+.. .++|+++.+.++......+.+.|+.|++++|+++++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~ 63 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYRE-------------------KYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSE 63 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHT-------------------CCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred EEEecCccCCCCHHHHHHHHHHHHh-------------------cCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCe
Confidence 8999999999999999998765321 124555434344445677889999999999999888
Q ss_pred EEEeccC-----------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454 190 YVYDYES-----------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK 240 (603)
Q Consensus 190 ~vf~~es-----------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~ 240 (603)
++++... .++......++..|+++..++++ +++.++.++|++.|..
T Consensus 64 v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~---- 138 (384)
T 1eg5_A 64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD-SRGVVKLEELEKLVDE---- 138 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC-TTSCBCHHHHHHHCCT----
T ss_pred EEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC-CCCccCHHHHHHHhCC----
Confidence 8775321 11212222335668888888887 4678999999998863
Q ss_pred CCCeeEEEEeCccccccccccHHHH-HHHHhCC--cEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454 241 KKQRGLFVFPLHSRMTGARYPYLWM-RIAQEND--WHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC 317 (603)
Q Consensus 241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g--~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~ 317 (603)
+++++++++.+|.||.++|++.+ ++|+++| +++++|+++..+. .++++..+++|++++|+||+|| |.|+|+
T Consensus 139 --~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~sK~~g--~~G~G~ 212 (384)
T 1eg5_A 139 --DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK--IPFSLEKLEVDYASFSAHKFHG--PKGVGI 212 (384)
T ss_dssp --TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT--SCCCCTTTCCSEEEEEGGGGTS--CTTCEE
T ss_pred --CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCC--cccCchhcCCCEEEecHHHhcC--CCceEE
Confidence 68999999999999999999865 5899999 9999999988776 4677877789999999999999 779999
Q ss_pred EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454 318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 397 (603)
Q Consensus 318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~ 397 (603)
++++++. .+.+.+.++.. . .. +..|++|..++.++.
T Consensus 213 ~~~~~~~--~~~~~~~~~~~-------~-------------------~~--~~~~~~~~~~~~a~~-------------- 248 (384)
T 1eg5_A 213 TYIRKGV--PIRPLIHGGGQ-------E-------------------RG--LRSGTQNVPGIVGAA-------------- 248 (384)
T ss_dssp EEECTTS--CCCCSBCSSCT-------T-------------------TT--TBCSCCCHHHHHHHH--------------
T ss_pred EEEcCCC--ccccccccCcc-------c-------------------cc--ccCCCCChHHHHHHH--------------
Confidence 9999875 23433322110 0 01 246778887766554
Q ss_pred HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454 398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 477 (603)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r 477 (603)
++++...+ +++.+.++.+.++++|.+.|.+. | +++++|.. ...
T Consensus 249 --------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~-~~~ 291 (384)
T 1eg5_A 249 --------------------------RAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNL------G---AHIITPLE-ISL 291 (384)
T ss_dssp --------------------------HHHHHHHH-THHHHHHHHHHHHHHHHHHHHTT------T---CEECSCTT-SBC
T ss_pred --------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCC------C---eEEeCCcc-cCC
Confidence 57766543 67888999999999999999873 2 56666632 124
Q ss_pred CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454 478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV 557 (603)
Q Consensus 478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V 557 (603)
+.++.|.+++.+ ...+.+.+.++||.++.|..|......+. .+++..+. . .....+.|
T Consensus 292 ~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~~~~~~~i 349 (384)
T 1eg5_A 292 PNTLSVSFPNIR-----GSTLQNLLSGYGIYVSTSSACTSKDERLR-----HVLDAMGV-------D-----RRIAQGAI 349 (384)
T ss_dssp TTEEEEECTTCC-----HHHHHHHHHHTTEECBC-----------------CHHHHTTC-------C-----HHHHHHEE
T ss_pred CCEEEEEeCCCC-----HHHHHHHHhhCCeEEeccccccCCCCcch-----HHHHHcCC-------C-----hhhcCCeE
Confidence 678999887543 34455555679999999988865422221 12222110 0 00113689
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 558 TASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 558 R~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
|+|++.++|.+||+++++.|++++++
T Consensus 350 Ri~~~~~~~~~~i~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 350 RISLCKYNTEEEVDYFLKKIEEILSF 375 (384)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 14
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=3.5e-28 Score=259.54 Aligned_cols=377 Identities=12% Similarity=0.179 Sum_probs=251.7
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccc
Q 007454 76 SLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKT 155 (603)
Q Consensus 76 ~~~~F~~~~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~ 155 (603)
.|+..++.. ..++++|+ +||.+ ++.+|||+++.++.++.+++++.+.+.. .+
T Consensus 5 ~~~~~~~~~------~~~~~~r~-~f~~~--~~~~yld~~~~~~~~~~v~~a~~~~l~~-------------------~~ 56 (416)
T 1qz9_A 5 NDCLALDAQ------DSLAPLRQ-QFALP--EGVIYLDGNSLGARPVAALARAQAVIAE-------------------EW 56 (416)
T ss_dssp HHHHHHHHT------CTTGGGGG-GBCCC--TTCEECCTTTSCCCBTTHHHHHHHHHHT-------------------CC
T ss_pred hHHHhcccc------chhHHHHH-hCCCC--CCeEeecCCCcCCCcHHHHHHHHHHHHH-------------------HH
Confidence 355666644 25678887 69988 7899999999999999999988765321 11
Q ss_pred cccCccccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccC-chHHHHHHHHH------HcCCEEEEEe-ccCCc-----
Q 007454 156 GNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYES-EAVEAMIRTSE------KRGARVMSAE-FSWPR----- 222 (603)
Q Consensus 156 aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~~~~a~------~~Ga~V~~~~-~~~~~----- 222 (603)
+|+.+...+.......++++|+.|++++|+++++++|+... +++..++..+. +.|.+|...+ ..++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~ 136 (416)
T 1qz9_A 57 GNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIA 136 (416)
T ss_dssp CCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHH
T ss_pred hccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHH
Confidence 23322111111123567899999999999988899887432 23433334332 4566544443 23321
Q ss_pred ---------c-c---cC-HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCC
Q 007454 223 ---------L-R---IN-SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDM 287 (603)
Q Consensus 223 ---------g-~---i~-~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m 287 (603)
| . ++ .++|++.|. +++++|++++.+|.||.++|++.| ++|+++|+++++|+++..|.
T Consensus 137 ~~~~~~~~~g~~~~~v~~~~~l~~~i~------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~-- 208 (416)
T 1qz9_A 137 EGLADMLQQGYTLRLVDSPEELPQAID------QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA-- 208 (416)
T ss_dssp HHHHHHHCSSCEEEEESSGGGHHHHCS------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--
T ss_pred HHHHHHhcCCceEEEeCcHHHHHHHhC------CCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccC--
Confidence 1 0 11 456666664 368999999999999999999866 58999999999999999887
Q ss_pred CCCCCCCCCCcEEEEcccccCCCCCCce-EEEEEeCCCCcCcCCCCCC--CceeccccccccccccccCCCCCCcccCcc
Q 007454 288 DSFGLSLVRPDFLICSFYQIFGENPSGF-GCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSK 364 (603)
Q Consensus 288 ~~ldls~~~~Dflv~S~hK~fG~~P~G~-G~L~vkk~~~~~L~p~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 364 (603)
.++++..+++|++++|+||++++ +.|+ |+++++++..+.+++...| |....... ...+.... ..
T Consensus 209 ~~~~~~~~~~d~~~~s~~K~l~~-g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~-~~~~~~~~-----------~~ 275 (416)
T 1qz9_A 209 VPVDLHQAGADYAIGCTYKYLNG-GPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAM-EPRYEPSN-----------GI 275 (416)
T ss_dssp SCCCHHHHTCSEEEECSSSTTCC-CTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCC-CSSCCBCS-----------SG
T ss_pred cCCChhhcCCCEEEecCcccCCC-CCCCeEEEEECHHHHhccCCCccccCccccccCC-CCccCCCc-----------ch
Confidence 57777777899999999998643 4466 9999999988777765444 22110000 00010000 01
Q ss_pred cccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHH
Q 007454 365 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 444 (603)
Q Consensus 365 ~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L 444 (603)
.. ++.||+|..+++++. ++++.+.+.+++.+.++.+.+
T Consensus 276 ~~--~~~~~~~~~~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~ 313 (416)
T 1qz9_A 276 AR--YLCGTQPITSLAMVE----------------------------------------CGLDVFAQTDMASLRRKSLAL 313 (416)
T ss_dssp GG--GCCSCCCHHHHHHHH----------------------------------------HHHHHHTTSCHHHHHHHHHHH
T ss_pred HH--hcCCCCCHHHHHHHH----------------------------------------HHHHHHHhcCHHHHHHHHHHH
Confidence 12 468899998887765 588877666899999999999
Q ss_pred HHHHHHHHhcC-CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchh
Q 007454 445 INWLVNALMKL-QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 523 (603)
Q Consensus 445 ~~~L~~~L~~L-~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~ 523 (603)
+++|.+.|.++ +. +.+++++|.....+++++.|.+++ ...+.+.+.++||.++.
T Consensus 314 ~~~l~~~L~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~l~~~gi~~~~------------ 368 (416)
T 1qz9_A 314 TDLFIELVEQRCAA------HELTLVTPREHAKRGSHVSFEHPE-------GYAVIQALIDRGVIGDY------------ 368 (416)
T ss_dssp HHHHHHHHHHHHTT------SCCEECSCSSGGGBCSEEEEECTT-------HHHHHHHHHTTTEECEE------------
T ss_pred HHHHHHHHHhhccC------CCeEEeCCCCHHHcCCEEEEecCC-------HHHHHHHHHhCCcEecc------------
Confidence 99999999875 20 026777764222357889888864 23344444567887531
Q ss_pred hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhhhhhccccccccccCccce
Q 007454 524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTI 601 (603)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~~f~~~~~~~~~~~~~~~~ 601 (603)
...+.||+|++ +++|.+||+++++.|++++. +..|+.-..|+++.
T Consensus 369 ----------------------------~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~-----~~~~~~~~~~~~~~ 414 (416)
T 1qz9_A 369 ----------------------------REPRIMRFGFTPLYTTFTEVWDAVQILGEILD-----RKTWAQAQFQVRHS 414 (416)
T ss_dssp ----------------------------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHH-----HTTTC---------
T ss_pred ----------------------------CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHh-----ccccccccccccCC
Confidence 01258999998 69999999999999998865 36899988888864
No 15
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=1.2e-27 Score=252.15 Aligned_cols=350 Identities=13% Similarity=0.124 Sum_probs=249.1
Q ss_pred hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454 92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL 171 (603)
Q Consensus 92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~ 171 (603)
.++++|+ +||.+ ++.+|||+++.++.++.+++++.+.+... ...++.+...|. .....
T Consensus 3 ~~~~~r~-~f~~~--~~~i~l~~~~~~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~y~-~~~~~ 60 (390)
T 1elu_A 3 MITPSLH-QFPGL--ANKTYFNFGGQGILPTVALEAITAMYGYL------------------QENGPFSIAANQ-HIQQL 60 (390)
T ss_dssp --------CCGGG--TTSEECCTTTCCCCCHHHHHHHHHHHHHH------------------HHHCSSSHHHHH-HHHHH
T ss_pred chHHHHH-hcCCC--CCeEEecCCccCCCCHHHHHHHHHHHHHH------------------hccCCcchhhHH-HHHHH
Confidence 4678887 69988 77999999999999999999877643210 012222211221 12366
Q ss_pred HHHHHHHHHHHcCCCCCcEEEecc--------------------------CchHH-HHHHHHHHcCCEEEEEeccC-Ccc
Q 007454 172 ESAMKKRIMDFLNISENDYVYDYE--------------------------SEAVE-AMIRTSEKRGARVMSAEFSW-PRL 223 (603)
Q Consensus 172 ~~~aR~~Ia~~lna~~~e~vf~~e--------------------------s~sV~-~~~~~a~~~Ga~V~~~~~~~-~~g 223 (603)
..+.|++|++++|+++++++++.. +.+.. .+...++..|+++..++.+. .++
T Consensus 61 ~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 140 (390)
T 1elu_A 61 IAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ 140 (390)
T ss_dssp HHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS
T ss_pred HHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc
Confidence 789999999999998888876421 11221 12334566799999998752 256
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHH----hCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQ----ENDWHILIDACALGPKDMDSFGLSLVRPD 298 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~----e~g~~vlvDAaq~~~~~m~~ldls~~~~D 298 (603)
.++.++|++.|.. ++++|++++.+|.||.++|++.+ ++|+ ++|+++++|.++..+. .++++...++|
T Consensus 141 ~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~--~~~~~~~~~~d 212 (390)
T 1elu_A 141 GDAAAVLANHLGP------KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS--LPLDFSRLEVD 212 (390)
T ss_dssp SCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT--BCCCTTTSCCS
T ss_pred cchHHHHHHhcCC------CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC--cCCChhhcCCC
Confidence 7888999888753 68999999999999999999866 5899 9999999999998887 57888888999
Q ss_pred EEEEcccc-cCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454 299 FLICSFYQ-IFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 376 (603)
Q Consensus 299 flv~S~hK-~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~ 376 (603)
++++|+|| ++| |.|+|++++++++++.+.+...| +.+........ +...+ .... ++.||+|.
T Consensus 213 ~~~~s~~K~~~~--~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~-----------~~~~--~~~~~~~~ 276 (390)
T 1elu_A 213 YYAFTGHKWFAG--PAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEP-TGWAE-----------GGKR--FEVATSAY 276 (390)
T ss_dssp EEEEESSSTTCC--CTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCE-EEECS-----------GGGG--GCCSCCCH
T ss_pred EEEccccccccC--CCceEEEEECHHhHhhcCCccccCCcccccccCcc-ccccc-----------chHh--hCCCCCCH
Confidence 99999999 455 78999999999998888876666 33221110000 10000 0112 46788888
Q ss_pred hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcC
Q 007454 377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKL 455 (603)
Q Consensus 377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG-l~~i~~r~~~L~~~L~~~L~~L 455 (603)
.+.+++. .+++.+...| ++.+.++.+.+++++.+.|.++
T Consensus 277 ~~~~a~~----------------------------------------~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 316 (390)
T 1elu_A 277 PQYAGLL----------------------------------------AALQLHQRQGTAEERYQAICQRSEFLWRGLNQL 316 (390)
T ss_dssp HHHHHHH----------------------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH----------------------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 8776654 5788776667 8999999999999999999986
Q ss_pred CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454 456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 535 (603)
Q Consensus 456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~ 535 (603)
+ .+++++|. ..+++++.|.++. + ++...+.+.+.++||.++.|.
T Consensus 317 ~--------g~~~~~~~--~~~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~~~---------------------- 360 (390)
T 1elu_A 317 P--------HVHCLATS--APQAGLVSFTVDS--P--LGHRAIVQKLEEQRIYLRTIA---------------------- 360 (390)
T ss_dssp T--------TEEESCSS--CCSSSEEEEEECS--S--SCHHHHHHHHHHTTEECEEET----------------------
T ss_pred C--------CcEEecCc--cccccEEEEEcCC--C--CCHHHHHHHHHHCCEEEEecC----------------------
Confidence 3 27888763 2468899998852 1 233444444467799988652
Q ss_pred cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
..+.||+|+++++|.+|++++++.|+++
T Consensus 361 -----------------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 -----------------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp -----------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred -----------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 0158999999999999999999998764
No 16
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=1.6e-27 Score=252.07 Aligned_cols=340 Identities=11% Similarity=0.035 Sum_probs=247.3
Q ss_pred hccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHH
Q 007454 100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (603)
Q Consensus 100 efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~I 179 (603)
+||.+ .+.+|||+++.++.++.+++++.+.+. + + .+......+++.|+.+
T Consensus 2 ~fp~~--~~~~yl~~~~~~~~~~~v~~a~~~~~~-----------------------~----~-~~~~~~~~~~~l~~~l 51 (392)
T 2z9v_A 2 RYPEH--ADPVITLTAGPVNAYPEVLRGLGRTVL-----------------------Y----D-YDPAFQLLYEKVVDKA 51 (392)
T ss_dssp CCCTT--SCCSEECSSSCCCCCHHHHHHTTSCCC-----------------------C----T-TSHHHHHHHHHHHHHH
T ss_pred CcccC--CCcceeecCCCcCCCHHHHHHHhcccc-----------------------c----c-ccHHHHHHHHHHHHHH
Confidence 59999 788999999999999999999765421 1 0 1122456788999999
Q ss_pred HHHcCCCCCcEEEecc-------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHH
Q 007454 180 MDFLNISENDYVYDYE-------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 234 (603)
Q Consensus 180 a~~lna~~~e~vf~~e-------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l 234 (603)
++++|+++++++++.. +.+.. +...++..|+++..+++++ ++.++.++|++.|
T Consensus 52 a~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l 129 (392)
T 2z9v_A 52 QKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPY-NEAIDPQAVADML 129 (392)
T ss_dssp HHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCT-TSCCCHHHHHHHH
T ss_pred HHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCC-CCCCCHHHHHHHH
Confidence 9999998888876421 22232 3445566799999999984 6789999999999
Q ss_pred hhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC
Q 007454 235 VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 313 (603)
Q Consensus 235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~ 313 (603)
.. .+++++|++++.+|.||.++|++.+ ++|+++|+++++|+++..+. .++++..+++|++++|+||++++ |.
T Consensus 130 ~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d~~~~s~sK~~~~-~~ 202 (392)
T 2z9v_A 130 KA----HPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGG--MKTHPEDCKADIYVTGPNKCLGA-PP 202 (392)
T ss_dssp HH----CTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BSCCGGGGTCSEEEECSSSTTCC-CS
T ss_pred hc----CCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCC--cccccccccceEEEecCcccccC-CC
Confidence 63 1358899999999999999999865 58999999999999998887 57888878899999999996554 78
Q ss_pred ceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454 314 GFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 392 (603)
Q Consensus 314 G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~ 392 (603)
|+|+++++++.++.+++...| |... ......+ . .+. ... ...||+|...++++.
T Consensus 203 g~G~l~~~~~~~~~l~~~~~g~~~~~--~~~~~~~--~-----~~~-----~~~--~~~~~~~~~~~~a~~--------- 257 (392)
T 2z9v_A 203 GLTMMGVSERAWAKMKANPLAPRASM--LSIVDWE--N-----AWS-----RDK--PFPFTPSVSEINGLD--------- 257 (392)
T ss_dssp CCEEEEECHHHHHHHHTCTTSCCSST--TCSGGGT--T-----TTS-----TTS--CCSSCCCHHHHHHHH---------
T ss_pred ceeEEEECHHHHHHhhhccCCCCcee--ccHHHHH--h-----hhc-----ccC--CCCCCCCHHHHHHHH---------
Confidence 999999998876556542211 1000 0000000 0 000 011 357888888877665
Q ss_pred chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454 393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 472 (603)
Q Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~ 472 (603)
++++.+.+.|++.+.++.+.+++++.+.|.++ | +++++|.
T Consensus 258 -------------------------------~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~ 297 (392)
T 2z9v_A 258 -------------------------------VALDLYLNEGPEAVWARHALTAKAMRAGVTAM------G---LSVWAAS 297 (392)
T ss_dssp -------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CCBSSSS
T ss_pred -------------------------------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc------C---CeeccCC
Confidence 57888777789999999999999999999876 1 4555532
Q ss_pred CCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCC
Q 007454 473 IRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 551 (603)
Q Consensus 473 ~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 551 (603)
.....++++.|.+++. ++.. ++++|.+++||.++.|..+
T Consensus 298 ~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~g~~~------------------------------------ 337 (392)
T 2z9v_A 298 DSIASPTTTAVRTPDG----VDEKALRQAARARYGVVFSSGRGE------------------------------------ 337 (392)
T ss_dssp GGGBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGG------------------------------------
T ss_pred ccccCCceEEEECCCC----CCHHHHHHHHHhcCCEEEecCCCC------------------------------------
Confidence 1123578899988621 2233 4455555559999887532
Q ss_pred CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454 552 LGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 552 ~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+.+|+|+ ++++|.+||+++++.|++++++
T Consensus 338 ~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 338 TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 0125899995 6699999999999999999865
No 17
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.5e-26 Score=243.40 Aligned_cols=343 Identities=12% Similarity=0.094 Sum_probs=249.9
Q ss_pred HHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHH
Q 007454 94 DQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES 173 (603)
Q Consensus 94 d~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~ 173 (603)
.++|+ +||.+ ++.+|||+++.+++++.+++++.+.+.. .++.......+
T Consensus 8 ~~~r~-~f~~~--~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------------------------~~~~~~~~~~~ 56 (386)
T 2dr1_A 8 EAFKE-VYEMV--KPKYKLFTAGPVACFPEVLEIMKVQMFS----------------------------HRSKEYRKVHM 56 (386)
T ss_dssp HHHHH-HHHHH--SCCSEECCSSSCCCCHHHHHHTTSCCCC----------------------------TTSHHHHHHHH
T ss_pred HHHHH-HHhhc--CccceeecCCCcCCcHHHHHHHhccccc----------------------------ccCHHHHHHHH
Confidence 56787 59988 6689999999999999999997653210 11222357888
Q ss_pred HHHHHHHHHcCCC-CCcEEEecc----------------------CchHHH--HHHHHHHcCCEEEEEeccCCccccCHH
Q 007454 174 AMKKRIMDFLNIS-ENDYVYDYE----------------------SEAVEA--MIRTSEKRGARVMSAEFSWPRLRINSE 228 (603)
Q Consensus 174 ~aR~~Ia~~lna~-~~e~vf~~e----------------------s~sV~~--~~~~a~~~Ga~V~~~~~~~~~g~i~~~ 228 (603)
++++.+++++|++ +++++++.. ..+... +...++..|+++..++.++ ++.++.+
T Consensus 57 ~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~ 135 (386)
T 2dr1_A 57 DTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPE 135 (386)
T ss_dssp HHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHH
T ss_pred HHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHH
Confidence 9999999999997 556766421 111222 4556677899999999884 6789999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccc
Q 007454 229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQI 307 (603)
Q Consensus 229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~ 307 (603)
+|++.|.. .+++++|++.+.+|.||.+.|++.+ ++|+++|+++++|+++..+. .++++..+++|++++|+||+
T Consensus 136 ~l~~~l~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s~sK~ 209 (386)
T 2dr1_A 136 DLDDALRK----NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGG--ADIKFDKWGLDVVFSSSQKA 209 (386)
T ss_dssp HHHHHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEEEETTST
T ss_pred HHHHHHhc----CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccC--ccccccccCCcEEEEecccc
Confidence 99999963 1368999999999999999999855 58999999999999998887 46788888999999999999
Q ss_pred CCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcc-cccccccCCCChhhhhhhhhhh
Q 007454 308 FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK-SKQEKVAATNTFSGPMSIEMRQ 386 (603)
Q Consensus 308 fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~e~GT~n~~gi~gl~~~~ 386 (603)
||. |.|+|+++++++.++.+.+....|... ...... .. + . .. ...+|+|..+.+++.
T Consensus 210 ~~~-~~g~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~-----~------~~~~--~~~~~~~~~~~~a~~--- 267 (386)
T 2dr1_A 210 FGV-PPGLAIGAFSERFLEIAEKMPERGWYF---DIPLYV--KY-----L------KEKE--STPSTPPMPQVFGIN--- 267 (386)
T ss_dssp TCC-CSSCEEEEECHHHHHHHTTCTTCCSTT---CHHHHH--HH-----H------HHHS--SCSSCCCHHHHHHHH---
T ss_pred ccC-CCceEEEEECHHHHHHHhcCCCCceEE---eHHHHH--Hh-----h------ccCC--CCCCCCCHHHHHHHH---
Confidence 886 778999999988766665422112100 000000 00 0 0 01 346777877766654
Q ss_pred cCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce
Q 007454 387 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNAL 465 (603)
Q Consensus 387 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl 465 (603)
.+++.+.+. |++.+.++.+.+++++.+.|.++ |
T Consensus 268 -------------------------------------~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~------g--- 301 (386)
T 2dr1_A 268 -------------------------------------VALRIIEKMGGKEKWLEMYEKRAKMVREGVREI------G--- 301 (386)
T ss_dssp -------------------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT------T---
T ss_pred -------------------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc------C---
Confidence 578887777 79999999999999999999886 2
Q ss_pred EEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454 466 VKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 544 (603)
Q Consensus 466 v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 544 (603)
+++++|.. ...+.++.|.+++. ++.. ++++|. ++||.++.|..+
T Consensus 302 ~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~v~~~~~~----------------------------- 346 (386)
T 2dr1_A 302 LDILAEPG-HESPTITAVLTPPG----IKGDEVYEAMR-KRGFELAKGYGS----------------------------- 346 (386)
T ss_dssp CCBSSCTT-CBCSSEEEEECCTT----CCHHHHHHHHH-HTTEECEECCGG-----------------------------
T ss_pred CeeCcCcc-ccCCceEEEEcCCC----CCHHHHHHHHH-HCCeEEecCccc-----------------------------
Confidence 34555532 23578999988631 2333 344555 459999877521
Q ss_pred ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
...+.||+|++.++|.+|++++++.|+++++.-
T Consensus 347 -------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 347 -------VKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp -------GTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 012589999999999999999999999998753
No 18
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.95 E-value=2.2e-26 Score=243.49 Aligned_cols=343 Identities=11% Similarity=0.057 Sum_probs=247.4
Q ss_pred hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454 92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL 171 (603)
Q Consensus 92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~ 171 (603)
+++..|+ .||.|. ++.+|+|+.+..++++.+++++.+.+.. + +.......
T Consensus 4 ~~~~~~~-~~~~~~-~~~~~~~~~g~~~~~~~v~~a~~~~~~~-------------------~---------~~~~~~~~ 53 (393)
T 2huf_A 4 KVTPPAV-LREPLV-TPNKLLMGPGPSNAPQRVLDAMSRPILG-------------------H---------LHPETLKI 53 (393)
T ss_dssp SSCCCGG-GGSCCC-CCCCEECSSSCCCCCHHHHHHTTSCCCC-------------------T---------TSHHHHHH
T ss_pred cccchhh-hhcccC-CCCeEEecCCCCCCCHHHHHHHHhhhcc-------------------C---------CCHHHHHH
Confidence 3444555 599986 6789999999999999999997653210 0 01123567
Q ss_pred HHHHHHHHHHHcCCCCC-cEEEec-------------------------cCchHHHHHHHHHHcCCEEEEEeccCCcccc
Q 007454 172 ESAMKKRIMDFLNISEN-DYVYDY-------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRI 225 (603)
Q Consensus 172 ~~~aR~~Ia~~lna~~~-e~vf~~-------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i 225 (603)
++++|+.+++++|++++ +++++. .+.+.. +...++..|++++.+++++ ++.+
T Consensus 54 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~ 131 (393)
T 2huf_A 54 MDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKV-GQSL 131 (393)
T ss_dssp HHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCT-TCCC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCC-CCCC
Confidence 88999999999999876 676632 112221 3445567899999999984 6789
Q ss_pred CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454 226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF 304 (603)
Q Consensus 226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~ 304 (603)
+.++|++.|... ++++|++++.+|.||.++|++.| ++|+++|+++++|+++..+. .++++..+++|++++|+
T Consensus 132 d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~ 204 (393)
T 2huf_A 132 SLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGG--APMFMDRWEIDAMYTGS 204 (393)
T ss_dssp CHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEECCS
T ss_pred CHHHHHHHHhcc-----CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCcchhhcCccEEEECC
Confidence 999999999741 47899999999999999999855 68999999999999998887 57888888999999999
Q ss_pred cccCCCCCCceEEEEEeCCCCcCcCCC-------CCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 305 YQIFGENPSGFGCLFVKKSTVPILVDN-------TSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 305 hK~fG~~P~G~G~L~vkk~~~~~L~p~-------~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
||+|++ |.|+|+++++++.++.+.+. ++++... ..++.. . . ..+ ++.||+++.
T Consensus 205 sK~l~g-~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~-----~------~~~--~~~~~~~~~ 264 (393)
T 2huf_A 205 QKVLGA-PPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLV-----GDYWGC-F-----G------RPR--IYHHTISST 264 (393)
T ss_dssp SSTTCC-CSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHH-----HHHTTC-S-----S------SCC--CCSCCCCHH
T ss_pred Cccccc-CCCeEEEEECHHHHHHHhhcCCCCceEEEchHHH-----Hhhhcc-c-----c------ccC--CCCCCCCHH
Confidence 997544 88999999998766544322 1110000 000000 0 0 012 467899999
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH 457 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h 457 (603)
+++++. ++++.+.+.|++.+.++.+.++++|.+.|.++
T Consensus 265 ~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 302 (393)
T 2huf_A 265 LLYGLR----------------------------------------EAIAMACEEGLPALIARHEDCAKRLYRGLQDA-- 302 (393)
T ss_dssp HHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--
Confidence 887765 57877766689999999999999999999886
Q ss_pred CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454 458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 536 (603)
Q Consensus 458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~ 536 (603)
| +++++|.. ...+.++.|.++. + ++. ++.++|++++||.++.|..|.
T Consensus 303 ----g---~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~g~~~~-------------------- 350 (393)
T 2huf_A 303 ----G---FELYADPK-DRLSTVTTIKVPQ--G--VDWLKAAQYAMKTYLVEISGGLGPT-------------------- 350 (393)
T ss_dssp ----T---CCBSSCGG-GBCTTEEEEECCT--T--CCHHHHHHHHHHHHCEECBCCCGGG--------------------
T ss_pred ----C---CeeccCcc-ccCCcEEEEEcCC--C--CCHHHHHHHHHHhCCEEEecCcccc--------------------
Confidence 2 44555531 1224588898862 1 223 345556666799998875431
Q ss_pred ccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454 537 EAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|+ ++.++.|||+++++.|+++++.
T Consensus 351 ----------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 351 ----------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp ----------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ----------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 125899999 5556899999999999998865
No 19
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.95 E-value=3e-26 Score=240.62 Aligned_cols=324 Identities=12% Similarity=0.113 Sum_probs=223.7
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc---cccccchHHHHHHHHHHHHHHHc
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT---QLLHGGQESGLESAMKKRIMDFL 183 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s---~~~~g~~~~~~~~~aR~~Ia~~l 183 (603)
+.++|||++|.+++|+.+++++.+.+... .++..+ ...++....++.+++|+++++++
T Consensus 2 ~~~~~l~~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 62 (362)
T 2c0r_A 2 SERAYNFNAGPAALPLEVLERAQAEFVDY-------------------QHTGMSIMEMSHRGAVYEAVHNEAQARLLALL 62 (362)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSS-------------------TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHT
T ss_pred CcceeeccCCCCCCCHHHHHHHHHHHhhh-------------------hhcCccccccCCCcHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999998765321 011111 11122334578899999999999
Q ss_pred CCCCC-cE-EEecc-----------------------CchHH-HHHHHHHHcCCEEEEEeccC--Ccc-ccCHHHHHHHH
Q 007454 184 NISEN-DY-VYDYE-----------------------SEAVE-AMIRTSEKRGARVMSAEFSW--PRL-RINSEKLRKMV 234 (603)
Q Consensus 184 na~~~-e~-vf~~e-----------------------s~sV~-~~~~~a~~~Ga~V~~~~~~~--~~g-~i~~~~L~~~l 234 (603)
|++++ ++ +++.. ..... .+...++..| +++.++++. ..+ .++.++++ |
T Consensus 63 g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i 139 (362)
T 2c0r_A 63 GNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--L 139 (362)
T ss_dssp TCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--C
T ss_pred CCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--c
Confidence 99775 64 44311 00011 1234456668 888888752 112 24544432 3
Q ss_pred hhcCCCCCCeeEEEEeCcccccccc-ccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC
Q 007454 235 VSKGKKKKQRGLFVFPLHSRMTGAR-YPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS 313 (603)
Q Consensus 235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~ 313 (603)
+++|++|++++.+|.||.+ .|++.+ +|++|++|++|..++ .++++.++ |++++|+||+|| |.
T Consensus 140 ------~~~t~~v~~~~~~n~tG~~~~~l~~i-----~~~~vivD~a~~~~~--~~~~~~~~--d~~~~s~~K~~g--~~ 202 (362)
T 2c0r_A 140 ------QDNAAYLHLTSNETIEGAQFKAFPDT-----GSVPLIGDMSSDILS--RPFDLNQF--GLVYAGAQKNLG--PS 202 (362)
T ss_dssp ------CTTEEEEEEESEETTTTEECSSCCCC-----TTSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTTC--CS
T ss_pred ------CCCcCEEEEeCCcCccceeccccccc-----CCCEEEEEChhhccC--CccchhHC--cEEEEecccccc--Cc
Confidence 2479999999999999996 666654 899999999999998 67887764 999999999999 88
Q ss_pred ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454 314 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 393 (603)
Q Consensus 314 G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~ 393 (603)
|+|+|+++++.++.+.+... ....+ .. + .. .. ...||+|..+++++.
T Consensus 203 G~G~l~~~~~~~~~l~~~~~-~~~~~----~~-~--~~-------------~~--~~~~t~~~~~~~a~~---------- 249 (362)
T 2c0r_A 203 GVTVVIVREDLVAESPKHLP-TMLRY----DT-Y--VK-------------NN--SLYNTPPSFGIYMVN---------- 249 (362)
T ss_dssp SCEEEEEEGGGSSSCCTTSC-GGGCH----HH-H--HH-------------TT--TCSSCCCHHHHHHHH----------
T ss_pred CcEEEEEcHHHHhhccccCc-hHHhH----HH-H--hh-------------cc--CcCCCchHHHHHHHH----------
Confidence 99999999988766654210 00000 00 0 00 00 246889988887765
Q ss_pred hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454 394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 472 (603)
Q Consensus 394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~ 472 (603)
++++.+.+. |++.+.++.+.++++|.+.|.++. + ++.++++.
T Consensus 250 ------------------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~--~~~~~~~~ 292 (362)
T 2c0r_A 250 ------------------------------EVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG-----G--FYRGCVDV 292 (362)
T ss_dssp ------------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST-----T--SSEESSCG
T ss_pred ------------------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC-----C--ccccCCCh
Confidence 688887776 689999999999999999999762 1 12555542
Q ss_pred CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454 473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 552 (603)
Q Consensus 473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 552 (603)
. ...++++.|.+++ + +....+.+.+.++||.++.|..+
T Consensus 293 ~-~~~~~~~~~~~~~--~--~~~~~~~~~L~~~gi~~~~g~~~------------------------------------- 330 (362)
T 2c0r_A 293 D-SRSDMNITFRLAS--E--ELEKEFVKASEQEGFVGLKGHRS------------------------------------- 330 (362)
T ss_dssp G-GBCSSEEEEECSC--H--HHHHHHHHHHHHTTEESCBCCTT-------------------------------------
T ss_pred H-HcCCcEEEEEcCC--c--chHHHHHHHHHHCCCeeccCCCC-------------------------------------
Confidence 1 2356789998864 1 22334555567789977654211
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 553 GITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 553 ~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+.||+|++.++|.|||++|+++|++++.
T Consensus 331 -~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 331 -VGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp -TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 14699999999999999999999999875
No 20
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.95 E-value=1e-27 Score=262.01 Aligned_cols=360 Identities=11% Similarity=-0.033 Sum_probs=227.9
Q ss_pred CCCCCCc-hhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc
Q 007454 84 YPQYFDT-YQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL 162 (603)
Q Consensus 84 ~p~y~~~-~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~ 162 (603)
.|+.... .++.++|+ +||.+ ...+||||+|+|++++.|++++....... |.+..-........|| ..
T Consensus 58 lp~~g~~~~~i~~~~~-~~~~~--~~~~yld~aa~~~~~~~v~~a~~~~~~~~-------~~~~~~~~~~~~~~~~--~~ 125 (456)
T 2z67_A 58 IPENGIDDEKIKLFLK-FLSMM--DTDKDPKSVRIGEREARTYSKIHEELSSG-------FCHGIGRSGNLVDPQP--KA 125 (456)
T ss_dssp CCSSCCCHHHHHHHHH-HHHTT--BGGGCTTCEECSSCCCCCSCHHHHHHTTT-------CTTCBSBTTBTTSCCT--TB
T ss_pred CCCCCCCHHHHHHHHH-HHHhc--cccccccccccccccccccccccCccccc-------cCCCccHHHHHHhhCc--cc
Confidence 4554432 56888888 59999 66899999999999999988865411000 0000000000112333 11
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCc-hHH--H----------------------HHHHHHHcCCEEEEEe
Q 007454 163 LHGGQESGLESAMKKRIMDFLNISENDYVYDYESE-AVE--A----------------------MIRTSEKRGARVMSAE 217 (603)
Q Consensus 163 ~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~-sV~--~----------------------~~~~a~~~Ga~V~~~~ 217 (603)
..+....++++++|+.+++++|++++ ++|+.... +.+ . +...++..|++++.++
T Consensus 126 ~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~ 204 (456)
T 2z67_A 126 SGASIMYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEEC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEE
Confidence 11113567889999999999999876 77764332 111 1 1223344577777776
Q ss_pred c---cCCccccCHHHHHHHH-hhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEe---ccccCCCCCCC
Q 007454 218 F---SWPRLRINSEKLRKMV-VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILID---ACALGPKDMDS 289 (603)
Q Consensus 218 ~---~~~~g~i~~~~L~~~l-~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvD---Aaq~~~~~m~~ 289 (603)
. + .++.++.++|+++| .... +.++.+|++...+|+||.+.|++.| ++|+++|++|++| +.|..|+ .+
T Consensus 205 ~~~~~-~~~~~d~~~l~~~i~~~~~--~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~--~~ 279 (456)
T 2z67_A 205 TVLDG-DRVYVPVEDIENAIKKEIE--LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY--LE 279 (456)
T ss_dssp CEEET-TEEECCHHHHHHHHHHHHH--TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH--HH
T ss_pred EeccC-CCCCcCHHHHHHHHHHHhh--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHh--hH
Confidence 5 3 46789999999999 4210 1257888889999999999999966 5899999999999 5566655 35
Q ss_pred CCCCCC--CCcEEEEcccccCCCCCCceEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccc
Q 007454 290 FGLSLV--RPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 366 (603)
Q Consensus 290 ldls~~--~~Dflv~S~hK~fG~~P~G~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 366 (603)
+++..+ ++||+++|+|||++. |.|+|+|++|+ +.+..+.+.+.|+
T Consensus 280 ~~~~~~~~~~D~~~~s~hK~~~~-p~g~G~l~~~~~~~~~~l~~~~~g~------------------------------- 327 (456)
T 2z67_A 280 KLKKAFKYRVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPGR------------------------------- 327 (456)
T ss_dssp HHHHHHTSCCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCSC-------------------------------
T ss_pred HHHHhhCCCCCEEEEcCCCCcCC-CCCeEEEEEcCHHHHhhcCcCCCCC-------------------------------
Confidence 555444 899999999998665 89999999964 4544454433321
Q ss_pred cccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007454 367 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 446 (603)
Q Consensus 367 ~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~ 446 (603)
..+++ ++++. .++..+...|++.+.++.+.+++
T Consensus 328 ---~~~~~----~~~~~----------------------------------------aal~~l~~~~~~~~~~~~~~~~~ 360 (456)
T 2z67_A 328 ---ASATP----VVNTL----------------------------------------VSLLSMGSKNYLELVKNQKNSKK 360 (456)
T ss_dssp ---BCSHH----HHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCH----HHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22221 45555555688999999999999
Q ss_pred HHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcE-EeeCcccCccCCchhhh
Q 007454 447 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENIS-LSYGSLHHIWFSDKYQK 525 (603)
Q Consensus 447 ~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~-lr~G~~C~~~~~~~~~~ 525 (603)
+|.++|.++++.. .+.+++|. ++|+|++.. ++ . ...+.+.+.++||. +|.. . ..+
T Consensus 361 ~l~~~L~~~~~~~-----g~~v~~~~------~~v~~~~~~-~~--~-~~~l~~~L~~~gi~~~rv~-~-~~g------- 416 (456)
T 2z67_A 361 LLDELLNDLSKKT-----GGKFLDVE------SPIASCISV-NS--D-PVEIAAKLYNLRVTGPRGI-K-KTD------- 416 (456)
T ss_dssp HHHHHHHHHHHHS-----SCCBCCCC------CSSEEEEEC-SS--C-HHHHHHHHHHTTEESCEEE-C-TTC-------
T ss_pred HHHHHHHhccccc-----CCEecCCC------CeEEEEEec-cc--H-HHHHHHHHHHcCCCcceEE-e-ecC-------
Confidence 9999998863100 14455542 788898831 11 1 22344444456652 2221 0 000
Q ss_pred hhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 526 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 526 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
.+. +..|. ....+.||+|+++++|.|||+++++.|++++
T Consensus 417 ----~f~-G~~~~------------~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 417 ----HFG-NCYLG------------TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ----HHH-HTCSS------------CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ----ccc-ccccc------------ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 000 11121 1123689999999999999999999998764
No 21
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=3.5e-26 Score=238.24 Aligned_cols=331 Identities=9% Similarity=0.062 Sum_probs=237.5
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC-C
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS-E 187 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~-~ 187 (603)
..|+++.+-.++++.+++++.+.+... .+ + ..+ .+....+.++++|+.+++++|++ +
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~------------~~------~---~~~-~~~~~~~~~~~~~~~la~~~g~~~~ 61 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEK------------IG------V---ISH-RSKKFEEVYKTASDNLKTLLELPSN 61 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTT------------TT------T---SCT-TSHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCC------------cc------C---cCC-CCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 468899999999999997665432110 00 0 000 11223578899999999999996 4
Q ss_pred CcEEEeccC-----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454 188 NDYVYDYES-----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR 244 (603)
Q Consensus 188 ~e~vf~~es-----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t 244 (603)
++++++... -+ ..+...++..|++++.++.++ ++.++.++|+ +. ++|
T Consensus 62 ~~v~~~~g~t~al~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~--~~------~~~ 131 (362)
T 3ffr_A 62 YEVLFLASATEIWERIIQNCVEKKSFHCVNGSFS-KRFYEFAGELGREAYKEEAAF-GKGFYPADIT--VP------ADA 131 (362)
T ss_dssp EEEEEESCHHHHHHHHHHHHCSSEEEEEECSHHH-HHHHHHHHHTTCEEEEEECCT-TCCCCGGGCC--CC------TTC
T ss_pred cEEEEeCCchHHHHHHHHhccCCcEEEEcCcHHH-HHHHHHHHHhCCCeEEEecCC-CCCCCHHHHh--cc------CCc
Confidence 667664211 11 123445677899999999873 6778888887 32 478
Q ss_pred eEEEEeCccccccccccHHHH-HHHHhC-CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 245 GLFVFPLHSRMTGARYPYLWM-RIAQEN-DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~-g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
++|.+.+.+|.||.++|++.| ++|+++ |++|++|+++..+. .++++.. +|++++|+||+||+ |.|+|++++++
T Consensus 132 ~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~--~~~~~~~--~d~~~~s~~K~~~~-~~G~g~~~~~~ 206 (362)
T 3ffr_A 132 EIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPY--PKFDWTK--IDSVFFSVQKCFGL-PAGLGVWILND 206 (362)
T ss_dssp CEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTS--SCCCTTS--CSEEEEETTSTTCC-CSCCEEEEEEH
T ss_pred cEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCC--cccChhH--CcEEEEecccccCC-CCceEEEEECH
Confidence 999999999999999999976 489999 99999999998887 5777765 99999999999987 78999999999
Q ss_pred CCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454 323 STVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA 401 (603)
Q Consensus 323 ~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~ 401 (603)
+.++.+.+...| |..........++ + ..+ ++ ...+|++..+++++.
T Consensus 207 ~~~~~~~~~~~gg~~~~~~~~~~~~~---~----~~~------~~--~~~~~~~~~~~~~~~------------------ 253 (362)
T 3ffr_A 207 RVIEKSKALLAKRKSIGTYHTIPSML---E----KAR------VN--QTPETPNAMNIFLLG------------------ 253 (362)
T ss_dssp HHHHHHHHHHHTTCCCCSTTSHHHHH---H----HHT------TT--CCSSCCCHHHHHHHH------------------
T ss_pred HHHHHhhhccccCCCCcccccHHHHH---H----Hhh------cC--CCCCCchHHHHHHHH------------------
Confidence 877666654434 3221110000000 0 000 11 237888888887765
Q ss_pred hhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEE
Q 007454 402 EADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL 481 (603)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~iv 481 (603)
.+++.+...|++.+.++.+.+++++.+.|.+++ .++++.|......+.++
T Consensus 254 ----------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------g~~~~~~~~~~~~~~~~ 303 (362)
T 3ffr_A 254 ----------------------KVTGDMLQISADGIRKQTEEKAALINTYIESSK--------VFSFGVEDAKLRSMTTI 303 (362)
T ss_dssp ----------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCS--------SEEESSSCGGGBCSSEE
T ss_pred ----------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcc--------CceeccCChhhcCCceE
Confidence 578877777899999999999999999998763 37887754323457899
Q ss_pred EEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec
Q 007454 482 AFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL 561 (603)
Q Consensus 482 sFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl 561 (603)
.|.+++ +. .+++++|. ++||.++.|+.|. ..+.||+|+
T Consensus 304 ~~~~~~-~~----~~~~~~l~-~~gi~~~~g~~~~------------------------------------~~~~iRis~ 341 (362)
T 3ffr_A 304 VANTTM-LP----GEINKILE-PFDMAVGAGYGSK------------------------------------KETQIRIAN 341 (362)
T ss_dssp EEEESS-CH----HHHHHHHG-GGTEEEEECSGGG------------------------------------TTTEEEEEC
T ss_pred EEecCC-CH----HHHHHHHH-HCCeEEecCcccc------------------------------------CCCEEEEEC
Confidence 999986 22 23444554 4599999884431 125899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 007454 562 GYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 562 g~~tt~eDVd~l~~~l~~~l 581 (603)
+.++|.|||++++++|++++
T Consensus 342 ~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 342 FPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp CTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 22
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.94 E-value=9.4e-26 Score=238.89 Aligned_cols=341 Identities=16% Similarity=0.118 Sum_probs=248.7
Q ss_pred hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454 92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL 171 (603)
Q Consensus 92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~ 171 (603)
..+++|+ +||.+. ...+|||+++.++.++.+++++.+.+. + .|+....+.
T Consensus 19 ~~~~~r~-~~~~~~-~~~~~l~~~~~~~~~~~v~~a~~~~~~-----------------------~-----~~~~~~~~~ 68 (393)
T 1vjo_A 19 INDNQRL-QLEPLE-VPSRLLLGPGPSNAHPSVLQAMNVSPV-----------------------G-----HLDPAFLAL 68 (393)
T ss_dssp CCCTTCC-CCCSCC-CCCCEECSSSCCCCCHHHHHHHSSCCC-----------------------C-----TTSHHHHHH
T ss_pred ecchhhh-cCCccC-CccceeccCCCCCCCHHHHHHHhcccc-----------------------c-----ccCHHHHHH
Confidence 4577887 699885 457899999999999999999875421 0 122224578
Q ss_pred HHHHHHHHHHHcCCCCC-cEEEecc----------------------CchHHH--HHHHHHHcCCEEEEEeccCCccccC
Q 007454 172 ESAMKKRIMDFLNISEN-DYVYDYE----------------------SEAVEA--MIRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 172 ~~~aR~~Ia~~lna~~~-e~vf~~e----------------------s~sV~~--~~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
.+++++.+++++|++++ +++++.. ..+... +...++..|+++..+++++ ++.++
T Consensus 69 ~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d 147 (393)
T 1vjo_A 69 MDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GEVFS 147 (393)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CCCCC
Confidence 88999999999999877 8876421 112222 4556677899999999984 67899
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY 305 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h 305 (603)
.++|++.|... ++++|+++..+|.||.++|++.+ ++|+++|+++++|.++..+. .++++..+++|++++|+|
T Consensus 148 ~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~di~~~s~s 220 (393)
T 1vjo_A 148 LEELRTALETH-----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG--VPIFLDAWGVDLAYSCSQ 220 (393)
T ss_dssp HHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEECCSS
T ss_pred HHHHHHHHhhC-----CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccC--cCCcccccCccEEEEcCc
Confidence 99999999741 47899999999999999999855 68999999999999998887 588888889999999999
Q ss_pred ccCCCCCCceEEEEEeCCCCcCcCC------CCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454 306 QIFGENPSGFGCLFVKKSTVPILVD------NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP 379 (603)
Q Consensus 306 K~fG~~P~G~G~L~vkk~~~~~L~p------~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi 379 (603)
|+||. |.|+|+++++++.++.+.. .++.++. .. ..+ . + +.. +..||+|..+.
T Consensus 221 K~l~~-~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~--~-------~-----~~~--~~~g~~~~~~~ 278 (393)
T 1vjo_A 221 KGLGC-SPGASPFTMSSRAIEKLQRRRTKVANWYLDMN-LL----GKY--W-------G-----SER--VYHHTAPINLY 278 (393)
T ss_dssp STTCS-CSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH-HH----HHH--H-------S-----TTC--CCCSCCCHHHH
T ss_pred ccccC-CCceEEEEECHHHHHHHhccCCCCCceecCcH-hh----hhh--h-------c-----cCC--CCCCCCCHHHH
Confidence 98876 6799999999886654421 1111110 00 000 0 0 011 23458888877
Q ss_pred hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454 380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN 459 (603)
Q Consensus 380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~ 459 (603)
+++. ++++.+.+.+++.+.++.+.+.+++.+.|.++
T Consensus 279 ~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 314 (393)
T 1vjo_A 279 YALR----------------------------------------EALRLIAQEGLANCWQRHQKNVEYLWERLEDI---- 314 (393)
T ss_dssp HHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHH----------------------------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----
Confidence 6655 57777666688999999999999999999886
Q ss_pred CCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454 460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA 538 (603)
Q Consensus 460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~ 538 (603)
| +++++|.. ...+.++.|.+++. ++. .+.++|.+++||.++.|..|.
T Consensus 315 --g---~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~---------------------- 362 (393)
T 1vjo_A 315 --G---LSLHVEKE-YRLPTLTTVCIPDG----VDGKAVARRLLNEHNIEVGGGLGEL---------------------- 362 (393)
T ss_dssp --T---CCBSSCGG-GBCSSEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGG----------------------
T ss_pred --C---CcccCCcc-ccCCcEEEEEcCCC----CCHHHHHHHHHhhCCEEEecCcccc----------------------
Confidence 2 44555532 22467888888531 123 345555555599999885431
Q ss_pred ccccccccccCCCCCCCEEEEe-cCCCCCHHHHHHHHHHHHHHHh
Q 007454 539 KSKSDNNRKDKANLGITVVTAS-LGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 539 ~~~~~~~~~~~~~~~~g~VR~S-lg~~tt~eDVd~l~~~l~~~l~ 582 (603)
..+.+|+| +++.++.||++++++.|+++++
T Consensus 363 --------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 363 --------------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp --------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred --------------CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 12589999 4677788899999999998863
No 23
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.94 E-value=2.3e-25 Score=233.93 Aligned_cols=333 Identities=12% Similarity=0.055 Sum_probs=240.1
Q ss_pred eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC--C
Q 007454 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE--N 188 (603)
Q Consensus 111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~--~ 188 (603)
++.+.|..++++.+++++.+.+.. + ++....+.++++|+++++++|+++ +
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~----------------------~------~~~~~~~~~~~~~~~la~~~~~~~~~~ 55 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVG----------------------F------TSKEFVEALAYSLKGLRYVMGASKNYQ 55 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCC----------------------T------TSHHHHHHHHHHHHHHHHHHTCCTTSE
T ss_pred eeccCCCCCCCHHHHHHhhccccc----------------------c------ccHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 567788889999999997653210 0 111235788899999999999988 7
Q ss_pred cEEEeccC---------------------chH--HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454 189 DYVYDYES---------------------EAV--EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG 245 (603)
Q Consensus 189 e~vf~~es---------------------~sV--~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~ 245 (603)
+++|+... ... ..+...++..|++++.+++++ ++.++.++|++.|.. .+++
T Consensus 56 ~v~~~~g~t~al~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-----~~~~ 129 (384)
T 3zrp_A 56 PLIIPGGGTSAMESVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSP-GDYVKPGEVEEEVRK-----SEYK 129 (384)
T ss_dssp EEEEESCHHHHHHHGGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCST-TCCCCHHHHHHHHHH-----SCEE
T ss_pred EEEEcCCcHHHHHHHHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCC-CCCCCHHHHHHHHHh-----CCCc
Confidence 77765321 111 123345567899999999985 778999999999975 2589
Q ss_pred EEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454 246 LFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST 324 (603)
Q Consensus 246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~ 324 (603)
+|++++.+|.||.++|++.+ ++|+++|+++++|+++..+. .++++..+++|++++|+||+|++ |.|+|+++++++.
T Consensus 130 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~g~~~~~~~~ 206 (384)
T 3zrp_A 130 LVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGA--EEVKAEEWNVDVYLTASQKALGS-AAGLGLLLLSPKA 206 (384)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTT--SCCCTTTTTCSEEEEETTSTTCC-CSSEEEEEECHHH
T ss_pred EEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccC--ccccccccCCCEEEecCcccccC-CCceEEEEECHHH
Confidence 99999999999999999865 58999999999999999887 68888888999999999998765 7899999999987
Q ss_pred CcCc-CCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhh
Q 007454 325 VPIL-VDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEA 403 (603)
Q Consensus 325 ~~~L-~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~ 403 (603)
++.+ ++....+.. ..... +.... ..++. ... ...||+|...++++.
T Consensus 207 ~~~~~~~~~~~~~~---~~~~~-~~~~~---~~~~~----~~~--~~~g~~~~~~~~a~~-------------------- 253 (384)
T 3zrp_A 207 LSILDSQNSIAGYY---LDLRN-WLPVM---RGAEE----GKA--AYFATPPVHVILQLA-------------------- 253 (384)
T ss_dssp HHHHHHCCCSCCST---TCHHH-HHHHH---HHHHT----TCC--CCSSCCCHHHHHHHH--------------------
T ss_pred HHHhcCCCCCCccc---ccHHH-HHHHH---Hhhcc----cCC--CcCCCCCHHHHHHHH--------------------
Confidence 6666 431111100 00000 00000 00000 000 123788888887765
Q ss_pred hhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE
Q 007454 404 DSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF 483 (603)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF 483 (603)
++++++...|++.+.++.+.+.++|.+.|.++. ++++++......+.++.|
T Consensus 254 --------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~~~~~~~~~~~~~~~ 304 (384)
T 3zrp_A 254 --------------------EAFRLIEKEGIENRIKRHTMVASAIRAGLEALG---------LEIVARRPESYSNTVTGV 304 (384)
T ss_dssp --------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT---------CCBSCSSGGGBCSSEEEE
T ss_pred --------------------HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC---------CeEccCcccccCccEEEE
Confidence 588888777899999999999999999999861 445555311234678889
Q ss_pred EEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCC
Q 007454 484 NVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGY 563 (603)
Q Consensus 484 nv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~ 563 (603)
.+++. +...+.+.+.++||.++.|.+|. . +.||+|++.
T Consensus 305 ~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~-----------------------------------~--~~iRi~~~~ 342 (384)
T 3zrp_A 305 ILKVA-----DPQKVLAGTVNEGVEFAPGVHPA-----------------------------------F--KYFRIGHMG 342 (384)
T ss_dssp ECSSS-----CHHHHHHHHHTTTCCCEECCCTT-----------------------------------C--CEEEEECCS
T ss_pred ECCCC-----CHHHHHHHHHHCCEEEecCCCCC-----------------------------------c--CEEEEeccc
Confidence 98763 33444444455699998775431 1 589999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh
Q 007454 564 LANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 564 ~tt~eDVd~l~~~l~~~l~~~ 584 (603)
++|.+||+++++.|++++++.
T Consensus 343 ~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 343 WVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998764
No 24
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.94 E-value=9.7e-25 Score=231.89 Aligned_cols=348 Identities=12% Similarity=0.018 Sum_probs=247.0
Q ss_pred ccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 101 YYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 101 fp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
|+.+. ....||...+-..+++.+++++.+.+. .+ ++....+.++++|++++
T Consensus 6 ~~~~~-~~~~~~~~pgp~~~~~~v~~a~~~~~~----------------------~~------~~~~~~~~~~~~~~~la 56 (411)
T 3nnk_A 6 FSQLN-PPSRLLMGPGPINADPRVLRAMSSQLI----------------------GQ------YDPAMTHYMNEVMALYR 56 (411)
T ss_dssp SCSCC-CCCCEEESSSCCCCCHHHHHHHTSCCC----------------------CT------TCHHHHHHHHHHHHHHH
T ss_pred ccccC-CccceeecCCCCCCCHHHHHHhhcccc----------------------cc------ccHHHHHHHHHHHHHHH
Confidence 45553 456799999999999999999765211 00 01123467889999999
Q ss_pred HHcCCCCCc-EEEecc----------------------CchHHH--HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHh
Q 007454 181 DFLNISEND-YVYDYE----------------------SEAVEA--MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV 235 (603)
Q Consensus 181 ~~lna~~~e-~vf~~e----------------------s~sV~~--~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~ 235 (603)
+++|+++++ ++++.. ..+..+ +...++..|++++.++++ .++.++.++|++.|.
T Consensus 57 ~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~ 135 (411)
T 3nnk_A 57 GVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVP-WGEVFTPDQVEDAVK 135 (411)
T ss_dssp HHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC-TTCCCCHHHHHHHHH
T ss_pred HHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHh
Confidence 999998876 444321 111222 456677889999999997 478889999999997
Q ss_pred hcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454 236 SKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG 314 (603)
Q Consensus 236 ~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G 314 (603)
.. ++++|++.+.+|.||.++|++.| ++|+++|+++++|+++..+. .++++..+++|++++|+||++++ |.|
T Consensus 136 ~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~d~~~~s~~K~l~~-~~g 207 (411)
T 3nnk_A 136 RI-----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGG--NPLETDVWGLDAVSAGMQKCLGG-PSG 207 (411)
T ss_dssp HH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTT--BCCCTTTTTCSEEECCSTTTTCC-CSS
T ss_pred hC-----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCC--cccchhccCCcEEEecCccccCC-CCc
Confidence 42 58999999999999999999855 68999999999999998887 68899889999999999997443 789
Q ss_pred eEEEEEeCCCCcCcC------CCCCCCceec---cccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhh
Q 007454 315 FGCLFVKKSTVPILV------DNTSSGMVSL---LPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR 385 (603)
Q Consensus 315 ~G~L~vkk~~~~~L~------p~~~gG~v~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~ 385 (603)
+|+++++++..+.+. +.++||+... ......++.... .. +...+.+ ++.||+|..+++++.
T Consensus 208 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~-----~~-~~~~~~~--~~~~~~~~~~~~a~~-- 277 (411)
T 3nnk_A 208 TSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGM-----VM-DYWGPER--LNHHTEATTALFGAR-- 277 (411)
T ss_dssp EEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHH-----HH-HHHSTTC--CCCSCCCHHHHHHHH--
T ss_pred eEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHH-----HH-hhhcccc--CCCCCCCHHHHHHHH--
Confidence 999999987654333 3344422100 000000000000 00 0000112 468899999887765
Q ss_pred hcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce
Q 007454 386 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL 465 (603)
Q Consensus 386 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl 465 (603)
.+++.....|++.+.++.+.++++|.+.|.++ |
T Consensus 278 --------------------------------------~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------g--- 310 (411)
T 3nnk_A 278 --------------------------------------ECARLILQEGLDYGIARHKLHGDALVKGIQAM------G--- 310 (411)
T ss_dssp --------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---
T ss_pred --------------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---
Confidence 57887777789999999999999999999986 2
Q ss_pred EEEeCCCCCCCCCCEEEEEEcc-CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454 466 VKIYGPKIRFDRGPALAFNVFD-WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 544 (603)
Q Consensus 466 v~Iygp~~~~~rg~ivsFnv~~-~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 544 (603)
++++.|.. ...+.++.|.+++ .+. .+++++|.+++||.++.|..
T Consensus 311 ~~~~~~~~-~~~~~~~~~~~~~~~~~----~~l~~~l~~~~gi~v~~g~~------------------------------ 355 (411)
T 3nnk_A 311 LETFGDLK-HKMNNVLGVVIPQGING----DQARKLMLEDFGIEIGTSFG------------------------------ 355 (411)
T ss_dssp CCBCSCGG-GBCSSEEEEECCTTCCH----HHHHHHHHHHHSEEEEECCG------------------------------
T ss_pred CEeCCCcc-cccccEEEEECCCCCCH----HHHHHHHHHhcCeEEeCccC------------------------------
Confidence 44555532 2357899999863 222 23455566777999997721
Q ss_pred ccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhhh
Q 007454 545 NRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 545 ~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
....+.||+|+ ++.+|.+||+++++.|++++++.
T Consensus 356 ------~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 356 ------PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp ------GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ------CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 01125899998 88889999999999999998763
No 25
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.94 E-value=6.8e-25 Score=232.22 Aligned_cols=341 Identities=14% Similarity=0.079 Sum_probs=242.1
Q ss_pred hccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHH
Q 007454 100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (603)
Q Consensus 100 efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~I 179 (603)
-||.|. .+.+|+++.+..++++.+++++.+.+.. + ++......+.+.|+.|
T Consensus 10 ~~~~~~-~~~~~~~~~~p~~~~~~v~~a~~~~~~~--------------------------~--~~~~~~~~~~~l~~~l 60 (396)
T 2ch1_A 10 LRNPLI-IPEKIMMGPGPSNCSKRVLTAMTNTVLS--------------------------N--FHAELFRTMDEVKDGL 60 (396)
T ss_dssp GSSCCC-CCCCBCCSSSSCCCCHHHHHHTTSCCCC--------------------------T--TCHHHHHHHHHHHHHH
T ss_pred cCCCCC-CCcceeecCCCCCCCHHHHHHhcccccc--------------------------C--CChhHHHHHHHHHHHH
Confidence 388885 5788999999999999999997653210 0 1112335678999999
Q ss_pred HHHcCCCCC-cEEEecc-------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHH
Q 007454 180 MDFLNISEN-DYVYDYE-------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKM 233 (603)
Q Consensus 180 a~~lna~~~-e~vf~~e-------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~ 233 (603)
++++|++++ +++++.. +.+.. +...++..|++++.+++++ ++.++.++|++.
T Consensus 61 a~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~ 138 (396)
T 2ch1_A 61 RYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPP-DRPFSLETLARA 138 (396)
T ss_dssp HHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCT-TSCCCHHHHHHH
T ss_pred HHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCC-CCCCCHHHHHHH
Confidence 999999887 7866421 11221 2345677899999999884 778999999999
Q ss_pred HhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454 234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 312 (603)
Q Consensus 234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P 312 (603)
|... ++++|++++.+|.||.++|++.| ++|+++|+++++|+++..+. .++++..+++|++++|+||+++. |
T Consensus 139 l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~d~~~~s~~K~~~~-~ 210 (396)
T 2ch1_A 139 IELH-----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG--VPFYMDKWEIDAVYTGAQKVLGA-P 210 (396)
T ss_dssp HHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCCEEECCCC-CCCC-C
T ss_pred HHhC-----CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccC--CccchhhcCcCEEEEcCCccccC-C
Confidence 9741 47899999999999999999844 68999999999999998887 57888888999999999997665 7
Q ss_pred CceEEEEEeCCCCcCcCCCC--CCC-ceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCc
Q 007454 313 SGFGCLFVKKSTVPILVDNT--SSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 389 (603)
Q Consensus 313 ~G~G~L~vkk~~~~~L~p~~--~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~ 389 (603)
.|+|+++++++.++.+.... .++ ..... .....|.. . .... +..||++..+++++.
T Consensus 211 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-----------~~~~--~~~~~~~~~~~~a~~------ 269 (396)
T 2ch1_A 211 PGITPISISPKALDVIRNRRTKSKVFYWDLL-LLGNYWGC-Y-----------DEPK--RYHHTVASNLIFALR------ 269 (396)
T ss_dssp SSCEEEEECHHHHHHHHTCSSCCSCGGGCHH-HHHHHTTC-S-----------SSCC--CCCCCCCHHHHHHHH------
T ss_pred CCeEEEEECHHHHHhhhhccCcccceEechH-HHHHhhhh-h-----------cccC--CCCCCCcHHHHHHHH------
Confidence 89999999987665443221 110 00000 00000100 0 0011 457888888876654
Q ss_pred cccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe
Q 007454 390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 469 (603)
Q Consensus 390 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy 469 (603)
++++.+.+.+++.+.++.+.++++|.+.|.++ | ++++
T Consensus 270 ----------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~ 306 (396)
T 2ch1_A 270 ----------------------------------EALAQIAEEGLENQIKRRIECAQILYEGLGKM------G---LDIF 306 (396)
T ss_dssp ----------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH------T---CCBS
T ss_pred ----------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC------C---Ceec
Confidence 57777655588999999999999999999886 2 4455
Q ss_pred CCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccccc
Q 007454 470 GPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD 548 (603)
Q Consensus 470 gp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 548 (603)
+|......+.++.|.+++ + ++.. +.++|++++||.++.|+.|.
T Consensus 307 ~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~g~~~~-------------------------------- 350 (396)
T 2ch1_A 307 VKDPRHRLPTVTGIMIPK--G--VDWWKVSQYAMNNFSLEVQGGLGPT-------------------------------- 350 (396)
T ss_dssp SCSGGGBCTTEEEEECCT--T--CCHHHHHHHHHHHHCBCCBCCCGGG--------------------------------
T ss_pred cCCccccCCceEEEEcCC--C--CCHHHHHHHHHHhCCEEEecCcccc--------------------------------
Confidence 553212345588998852 1 2233 45566666799998775320
Q ss_pred CCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454 549 KANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 549 ~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|+ ++.++.||++++++.|++++++
T Consensus 351 ----~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 351 ----FGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp ----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 125899999 6778999999999999999875
No 26
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.94 E-value=1.1e-24 Score=225.83 Aligned_cols=321 Identities=12% Similarity=0.090 Sum_probs=234.9
Q ss_pred eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC--CC
Q 007454 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS--EN 188 (603)
Q Consensus 111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~--~~ 188 (603)
+|.++|.++.++.+++++.+.+. + + .+....+.++++|+.|++++|++ ++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~-----------------------~----~-~~~~~~~~~~~l~~~la~~~g~~~~~~ 53 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMR-----------------------G----H-LDPEVLRVNRAIQERLAALFDPGEGAL 53 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCC-----------------------C----T-TCHHHHHHHHHHHHHHHHHHCCCTTCE
T ss_pred ccCCCCCCCCCHHHHHHHhcccc-----------------------c----c-cCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 57788999999999999765421 0 0 12224567889999999999996 56
Q ss_pred cEEEec-----------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454 189 DYVYDY-----------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG 245 (603)
Q Consensus 189 e~vf~~-----------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~ 245 (603)
+++++. ++.+. .+...++..|+++..+++++ ++.++.++|++.|... +++
T Consensus 54 ~v~~t~g~t~a~~~~~~~~~~d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-----~~~ 126 (353)
T 2yrr_A 54 VAALAGSGSLGMEAGLANLDRGPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPP-GEPVDPEAVARALKRR-----RYR 126 (353)
T ss_dssp EEEESSCHHHHHHHHHHTCSCCCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCT-TSCCCHHHHHHHHHHS-----CCS
T ss_pred eEEEcCCcHHHHHHHHHHhcCCcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHHhC-----CCC
Confidence 676632 12222 23456677899999999984 7789999999999741 478
Q ss_pred EEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454 246 LFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST 324 (603)
Q Consensus 246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~ 324 (603)
+|++++.+|.||.++|++.+ ++|+++|+++++|+++..+. .++++..+++|++++|+||++++ |.|+|+++++++.
T Consensus 127 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~G~~~~~~~~ 203 (353)
T 2yrr_A 127 MVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGM--LPFSMRAMGVDYAFTGSQKCLSA-PPGLAPIAASLEA 203 (353)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHTCSEEECCTTSTTCC-CSSCEEEEECHHH
T ss_pred EEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccc--ccccccccCceEEEecCcccccC-CCceEEEEECHHH
Confidence 99999999999999999865 58999999999999998776 56777777899999999996554 7799999999987
Q ss_pred CcCcCC--CCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454 325 VPILVD--NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE 402 (603)
Q Consensus 325 ~~~L~p--~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~ 402 (603)
++.++. .++..... ..... ... ...||+|...++++.
T Consensus 204 ~~~l~~~~~~~~~~~~----~~~~~----------------~~~--~~~~~~~~~~~~a~~------------------- 242 (353)
T 2yrr_A 204 RKAFTGKRGWYLDLAR----VAEHW----------------ERG--GYHHTTPVLLHYALL------------------- 242 (353)
T ss_dssp HHHCCCCSCSTTCHHH----HHHHH----------------TTC--CCSSCCCHHHHHHHH-------------------
T ss_pred HHHhccCCCccccHHH----Hhhhh----------------hcC--CCCCCCCHHHHHHHH-------------------
Confidence 665652 11110000 00000 001 246788888776654
Q ss_pred hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454 403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA 482 (603)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs 482 (603)
++++++.+.|++.+.++.+.+++++.+.|.++ | ++++++. ...+.++.
T Consensus 243 ---------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~--~~~~~~~~ 290 (353)
T 2yrr_A 243 ---------------------EALDLVLEEGVAARERRAREVYAWVLEELKAR------G---FRPYPKA--SPLPTVLV 290 (353)
T ss_dssp ---------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CEESCSS--SBCTTEEE
T ss_pred ---------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC------C---CccccCc--cCCCeEEE
Confidence 57887777789999999999999999999885 1 5666643 12567888
Q ss_pred EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454 483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG 562 (603)
Q Consensus 483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg 562 (603)
|.+++ + ++...+.+.+.++||.++.|..|. ..+.||+|++
T Consensus 291 ~~~~~--~--~~~~~~~~~l~~~gi~v~~g~~~~------------------------------------~~~~iRi~~~ 330 (353)
T 2yrr_A 291 VRPPE--G--VDADRLVRALYAEGVAVAGGIGPT------------------------------------RGQVLRLGLM 330 (353)
T ss_dssp EECCT--T--CCHHHHHHHHHHTTEECEECCGGG------------------------------------TTTCEEEECS
T ss_pred EECCC--C--CCHHHHHHHHHHCCEEEeCCcccc------------------------------------CCCeEEEecC
Confidence 98852 1 234445454455699999886431 0257999999
Q ss_pred CCCCHHHHH-HHHHHHHHHHh
Q 007454 563 YLANFEDVY-RLWAFVAQFLD 582 (603)
Q Consensus 563 ~~tt~eDVd-~l~~~l~~~l~ 582 (603)
.++|.+|++ ++++.|+++++
T Consensus 331 ~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 331 GEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 999999999 99999998875
No 27
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.94 E-value=1.2e-24 Score=225.96 Aligned_cols=317 Identities=12% Similarity=0.010 Sum_probs=230.6
Q ss_pred eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCcE
Q 007454 111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190 (603)
Q Consensus 111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~ 190 (603)
||.++|.+++++.+++++.+.+.. + .+....+.+.+.|+.|++++|++++++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~--------------------------~--~~~~~~~~~~~l~~~la~~~g~~~~~i 54 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH--------------------------H--RTEAAREVFLKARGLLREAFRTEGEVL 54 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC--------------------------T--TSHHHHHHHHHHHHHHHHHHTCSSEEE
T ss_pred ccccCCCCCCCHHHHHHhccCCCC--------------------------c--cCHHHHHHHHHHHHHHHHHhCCCCceE
Confidence 899999999999999998764310 0 111234677899999999999988778
Q ss_pred EEec-------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454 191 VYDY-------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG 245 (603)
Q Consensus 191 vf~~-------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~ 245 (603)
+++. ++.+.. +...++..|+++..+++++ ++.++.++|++ ++++
T Consensus 55 ~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~---------~~~~ 123 (352)
T 1iug_A 55 ILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPY-GDTPRPEDVAK---------EGYA 123 (352)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCT-TCCCCTTTSCC---------SSCS
T ss_pred EEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCC-CCCCCHHHHhc---------cCCc
Confidence 6642 122333 3455667899999999874 66777776654 2578
Q ss_pred EEEEeCccccccccccHHHH-HHHHhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 246 LFVFPLHSRMTGARYPYLWM-RIAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~--g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
+|++++.+|.||.++|++.+ ++|+++ |+++++|+++..+. .++++..+++|++++|+||++++ |.|+|++++++
T Consensus 124 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~G~~~~~~ 200 (352)
T 1iug_A 124 GLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV--GEVALEAMGVDAAASGSQKGLMC-PPGLGFVALSP 200 (352)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT--BCCCSGGGTCSEEEEESSSTTCC-CSCEEEEEECH
T ss_pred EEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccC--cceeccccCeeEEEecCcccccC-CCceeEEEECH
Confidence 99999999999999999866 589999 99999999998887 57888778899999999995543 88999999998
Q ss_pred CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454 323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE 402 (603)
Q Consensus 323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~ 402 (603)
+.++.+++ ++.. ......+.. .+ .. ...||+|..+++++.
T Consensus 201 ~~~~~~~~---~~~~---~~~~~~~~~-------~~------~~--~~~~~~~~~~~~a~~------------------- 240 (352)
T 1iug_A 201 RALERLKP---RGYY---LDLARELKA-------QK------EG--ESAWTPAINLVLAVA------------------- 240 (352)
T ss_dssp HHHHTCCC---CSST---TCHHHHHHH-------HT------TT--CCSSCCCHHHHHHHH-------------------
T ss_pred HHHHHhhC---CCce---eeHHHHHhh-------cc------cC--CCCCCCCHHHHHHHH-------------------
Confidence 87655654 1100 000000000 00 11 346888888876654
Q ss_pred hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454 403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA 482 (603)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs 482 (603)
++++.+.+. ++.+.++.+.++++|.+.|.++ | +++++|. ..+.++.
T Consensus 241 ---------------------~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~~~~~~ 286 (352)
T 1iug_A 241 ---------------------AVLEEVLPR-LEEHLALKAWQNALLYGVGEEG------G---LRPVPKR---FSPAVAA 286 (352)
T ss_dssp ---------------------HHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT------T---CEESCSS---BCTTCEE
T ss_pred ---------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC------C---Ccccccc---cCCeEEE
Confidence 577776554 7889999999999999999885 2 5666653 3577999
Q ss_pred EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454 483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG 562 (603)
Q Consensus 483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg 562 (603)
|.+++ + ++...+.+.+.++||.++.|..+ ...+.||+|++
T Consensus 287 ~~~~~--~--~~~~~~~~~l~~~gi~v~~~~~~------------------------------------~~~~~iRi~~~ 326 (352)
T 1iug_A 287 FYLPE--G--VPYARVKEAFAQRGAVIAGGQGP------------------------------------LKGKVFRLSLM 326 (352)
T ss_dssp EECCT--T--CCHHHHHHHHHTTTEECEECCGG------------------------------------GTTTEEEECCC
T ss_pred EEcCC--C--CCHHHHHHHHHHCCEEEEeCCCc------------------------------------cCCCEEEEEcc
Confidence 99873 1 23344444445669999987521 01258999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 007454 563 YLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 563 ~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.++|.+||+++++.|++++.+
T Consensus 327 ~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 327 GAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 28
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=1.3e-25 Score=238.60 Aligned_cols=316 Identities=10% Similarity=0.023 Sum_probs=219.4
Q ss_pred cccCccccccchHHHHHHHHHHHHHHHcCCCCCcEEEecc-CchH----------------------HHHHHHHHHcC--
Q 007454 156 GNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYE-SEAV----------------------EAMIRTSEKRG-- 210 (603)
Q Consensus 156 aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV----------------------~~~~~~a~~~G-- 210 (603)
+|++..|. +....++++++|+++++++|++ ++++|+.. ++++ ..+...++..|
T Consensus 22 ~~~~~~h~-~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~ 99 (379)
T 3ke3_A 22 TDRALNHM-SKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFA 99 (379)
T ss_dssp CTTSCCTT-SHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHHHHHHHHHHCCS
T ss_pred cCCCCCCC-CHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHHHHHHHHHhCCC
Confidence 56655443 5556789999999999999997 56666421 1111 11223444455
Q ss_pred CEEEEEeccCC--------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEe
Q 007454 211 ARVMSAEFSWP--------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILID 278 (603)
Q Consensus 211 a~V~~~~~~~~--------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvD 278 (603)
+++..++.++. .+.++.++|++.|... ++++|++++.+|.||.++| ++.| ++|+++|+++++|
T Consensus 100 ~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 100 KSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp SEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEeccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 47888876421 1368999999999632 5889999999999999999 8755 5799999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCC
Q 007454 279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE 358 (603)
Q Consensus 279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e 358 (603)
++|. |. .++++..+++|++++|+||++|+ |.|+|+|+++++.++.+.+....+.. ... ..|...- ..++
T Consensus 175 ~~~~-g~--~~~~~~~~~~d~~~~s~~K~l~~-~~g~g~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~~~---~~~~ 243 (379)
T 3ke3_A 175 CIAS-GC--VWLDMKELGIDVLISAPQKGWSS-TPCAGLVMLSAAAIKKVESTESNCFS---LDL-KQWLTIM---RAYE 243 (379)
T ss_dssp CTTC-TT--CCCCHHHHTCSEEEECTTTTTCS-CCCEEEEEECHHHHHHHHTCCCSCST---TCH-HHHHHHH---HHHH
T ss_pred eccc-CC--ccccccccCCCEEEecchhhcCC-CCceEEEEECHHHHHhhhcCCCCcee---ecH-HHHHHHH---Hhhh
Confidence 9998 76 58998888999999999998876 88999999999877656542111100 000 0000000 0000
Q ss_pred cccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHH
Q 007454 359 PEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMIS 438 (603)
Q Consensus 359 ~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~ 438 (603)
.+ .+. -.+|+|.++++++. ++++.+.+.|++.+.
T Consensus 244 ~g---~~~---~~~t~~~~~~~a~~----------------------------------------aal~~~~~~g~~~~~ 277 (379)
T 3ke3_A 244 NG---GHA---YHATMPTDSLRQFR----------------------------------------DAILEAKEIGFDILR 277 (379)
T ss_dssp TT---SCC---CSSCCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHH
T ss_pred cc---CCC---CCCCCCHHHHHHHH----------------------------------------HHHHHHHHhcHHHHH
Confidence 00 000 13589999988876 689988888999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCc
Q 007454 439 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI 517 (603)
Q Consensus 439 ~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~ 517 (603)
+|.+.|+++|++.|.++ | ++++++. ..+.+ ++.|.+.+.+. .+.+.+.++||.++.|..|..
T Consensus 278 ~~~~~l~~~l~~~l~~~------g---~~~~~~~--~~~~~~i~~~~~~~~~~------~~~~~L~~~Gi~v~~g~~~~~ 340 (379)
T 3ke3_A 278 DAQWELGNRVRKVLTDK------G---IESVAAE--GFEAPGVVVSYTERDDM------HKGSAFAEAGLQIAAGVPLKV 340 (379)
T ss_dssp HHHHHHHHHHHHHHHHT------T---CCBSBCT--TCBCSSEEEEECSCHHH------HSSHHHHHTTCCCEECCCCSS
T ss_pred HHHHHHHHHHHHHHHHc------C---CEecCCc--cccCceEEEEccCCcch------HHHHHHHHCCeEEeCCccccc
Confidence 99999999999999986 2 4455553 23555 45555433211 113445678999999987653
Q ss_pred cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+. ....+.+|+|++.++|.+||+++++.|++++++
T Consensus 341 ~~-------------------------------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 341 GE-------------------------------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp CC-------------------------------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred cc-------------------------------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 21 112368999999999999999999999998765
No 29
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.93 E-value=3.2e-24 Score=228.21 Aligned_cols=337 Identities=12% Similarity=0.048 Sum_probs=238.3
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~ 188 (603)
..|+...+-..+++.+++++.+... . .+.....+.+++.|+.+++++|++++
T Consensus 11 ~~~~~~p~p~~~~~~v~~a~~~~~~----------------------~------~~~~~~~~~~~~l~~~la~~~g~~~~ 62 (416)
T 3isl_A 11 LRTIMTPGPVEVDPRVLRVMSTPVV----------------------G------QFDPAFTGIMNETMEMLRELFQTKNR 62 (416)
T ss_dssp CCEECSSSSCCCCHHHHHHTTSCCC----------------------C------TTSHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred cceeecCCCcCcCHHHHHHhcccCC----------------------C------CccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455566666778888887654210 0 01112357788999999999999887
Q ss_pred cEE-Eecc----------------------CchHHH--HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454 189 DYV-YDYE----------------------SEAVEA--MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ 243 (603)
Q Consensus 189 e~v-f~~e----------------------s~sV~~--~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~ 243 (603)
+++ +... ...... +...++..|++++.++++ +++.++.++|++.|... +
T Consensus 63 ~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~~-----~ 136 (416)
T 3isl_A 63 WAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE-WGTVFDPEDIIREIKKV-----K 136 (416)
T ss_dssp EEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-TTCCCCHHHHHHHHHHH-----C
T ss_pred cEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC-CCCCCCHHHHHHHHhhC-----C
Confidence 664 4311 111122 455677889999999998 47789999999999731 5
Q ss_pred eeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 244 RGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
+++|++++.+|.||.+.|++.| ++|+++|+++++|+++..+. .++++..+++|++++|+||++++ |.|+|++++++
T Consensus 137 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~l~g-~~g~g~~~~~~ 213 (416)
T 3isl_A 137 PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGG--CEVKVDEWKIDAAIGGTQKCLSV-PSGMAPITYNE 213 (416)
T ss_dssp CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTT--SCCCTTTTTCSEEECCSSSTTCC-CSSEEEEEECH
T ss_pred CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccC--CCcchhhcCCCEEEecCccccCC-CCCeEEEEECH
Confidence 7999999999999999999865 58999999999999998887 68899889999999999997433 88999999999
Q ss_pred CCCcCcCCC---------------CCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhc
Q 007454 323 STVPILVDN---------------TSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQS 387 (603)
Q Consensus 323 ~~~~~L~p~---------------~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~ 387 (603)
+.++.+.+. ..||... ... ++.... +... ..... ++.||+|..+++++.
T Consensus 214 ~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~-~~~---~~~~~~-----~~~~-~~~~~--~~~~~~~~~~~~a~~---- 277 (416)
T 3isl_A 214 RVADVIAARKKVERGIATQADRAALSGNRPI-TSN---YFDLSQ-----LEDY-WSERR--LNHHTEATTMLYALR---- 277 (416)
T ss_dssp HHHHHHHTC------------------CCCC-SCS---TTCHHH-----HHHH-TSTTC--CCSSCCCHHHHHHHH----
T ss_pred HHHHHhhccccccccccccccchhccCCCCC-Ccc---ccchHH-----HHhh-hcccC--CCCCCCCHHHHHHHH----
Confidence 876655532 1222210 000 000000 0000 00122 578899999887765
Q ss_pred CccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 007454 388 GKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVK 467 (603)
Q Consensus 388 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~ 467 (603)
++++.+...|++.+.++.+.++++|.+.|.++ | ++
T Consensus 278 ------------------------------------~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------g---~~ 312 (416)
T 3isl_A 278 ------------------------------------EGVRLVLEEGLETRFERHRHHEAALAAGIKAM------G---LR 312 (416)
T ss_dssp ------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CC
T ss_pred ------------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CE
Confidence 58888877789999999999999999999985 2 45
Q ss_pred EeCCCCCCCCCCEEEEEEc-cCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccc
Q 007454 468 IYGPKIRFDRGPALAFNVF-DWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 546 (603)
Q Consensus 468 Iygp~~~~~rg~ivsFnv~-~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 546 (603)
+++|.. ...+.++.|.++ +.+. .+++++|.+++||.++.|..
T Consensus 313 ~~~~~~-~~~~~~~~~~~~~~~~~----~~l~~~L~~~~gi~v~~g~~-------------------------------- 355 (416)
T 3isl_A 313 LFGDDS-CKMPVVTCVEIPGGIDG----ESVRDMLLAQFGIEIASSFG-------------------------------- 355 (416)
T ss_dssp BCSCGG-GBCTTEEEEECCTTCCH----HHHHHHHHHHHCEECBCCCS--------------------------------
T ss_pred eccCcc-ccCCcEEEEeCCCCCCH----HHHHHHHHHhCCEEEecCCC--------------------------------
Confidence 566542 234789999986 3322 23455566666999987741
Q ss_pred ccCCCCCCCEEEEecCCCCCHHH-HHHHHHHHHHHHhhh
Q 007454 547 KDKANLGITVVTASLGYLANFED-VYRLWAFVAQFLDAD 584 (603)
Q Consensus 547 ~~~~~~~~g~VR~Slg~~tt~eD-Vd~l~~~l~~~l~~~ 584 (603)
....+.||+|++.++|.+| |+++++.|++++++.
T Consensus 356 ----~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 356 ----PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp ----TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ----CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 0112689999988877777 999999999998763
No 30
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=2.2e-23 Score=219.17 Aligned_cols=331 Identities=13% Similarity=0.090 Sum_probs=229.2
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC-
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS- 186 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~- 186 (603)
...|+.+.+...+++.+++++.+.... + .+|. ....+.+.|++++++++..
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~-------------------~-~~~~--------~~~~~~~~~~~l~~~~~~~~ 55 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLG-------------------H-TSPE--------FVSIFQRVLKNTRAVFKSAA 55 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCC-------------------T-TSHH--------HHHHHHHHHHHHHHHTTCCG
T ss_pred ccceeecCCCcCchHHHHHHHhccccc-------------------c-CCHH--------HHHHHHHHHHHHHHHhCCCC
Confidence 356888888888899999987653210 0 1221 1234556777777777753
Q ss_pred ---CCcEEEeccC-ch--------------------------HHHHHHHHHHcCCEEEEEec-cCCccccCHHHHHHHHh
Q 007454 187 ---ENDYVYDYES-EA--------------------------VEAMIRTSEKRGARVMSAEF-SWPRLRINSEKLRKMVV 235 (603)
Q Consensus 187 ---~~e~vf~~es-~s--------------------------V~~~~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~~l~ 235 (603)
+++++|+... ++ ...+...++..|++++.+++ + .++.++.++|+++|.
T Consensus 56 ~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~ 134 (385)
T 2bkw_A 56 ASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLS 134 (385)
T ss_dssp GGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHH
T ss_pred CCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCC-CCCCCCHHHHHHHHh
Confidence 5677664211 00 11112455677999999988 6 478899999999997
Q ss_pred hcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454 236 SKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 312 (603)
Q Consensus 236 ~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~--g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P 312 (603)
. .++++|++++.+|.||.++|++.| ++|+++ |+++++|+++..+. .++++..+++|++++|+||++++ |
T Consensus 135 ~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~ 206 (385)
T 2bkw_A 135 Q-----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC--EEFEFDEWGVDFALTASQKAIGA-P 206 (385)
T ss_dssp H-----SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-C
T ss_pred c-----CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCC--ccccccccCceEEEecCcccccc-C
Confidence 4 257899999999999999999865 589999 99999999999887 57888888999999999997654 8
Q ss_pred CceEEEEEeCCCCc-CcC------CCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhh
Q 007454 313 SGFGCLFVKKSTVP-ILV------DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR 385 (603)
Q Consensus 313 ~G~G~L~vkk~~~~-~L~------p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~ 385 (603)
.|+|+++++++.++ .++ +..+++... . +.... ..++. ... ...||+|..+++++.
T Consensus 207 ~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~-~~~~~---~~~~~----~~~--~~~~~~~~~~~~a~~-- 268 (385)
T 2bkw_A 207 AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLR------R-WTPIM---ENYEA----GKG--AYFATPPVQLINSLD-- 268 (385)
T ss_dssp SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHH------H-HHHHH---HHHHT----TCC--CCSSCCCHHHHHHHH--
T ss_pred CcceEEEEcHHHHHHHHhhccCCCCCceeecHH------H-HhhHH---Hhhhc----cCC--CCCCCCCHHHHHHHH--
Confidence 89999999987655 453 122222110 0 00000 00000 000 124688888877765
Q ss_pred hcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCCc
Q 007454 386 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL-MKLQHPNTEGNA 464 (603)
Q Consensus 386 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L-~~L~h~~~~g~p 464 (603)
++++.+.+.|++.+.++.+.++++|.+.| .++ |
T Consensus 269 --------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------g-- 302 (385)
T 2bkw_A 269 --------------------------------------VALKEILEEGLHKRWDLHREMSDWFKDSLVNGL------Q-- 302 (385)
T ss_dssp --------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT------C--
T ss_pred --------------------------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc------C--
Confidence 58888776789999999999999999999 875 1
Q ss_pred eEEEeCCCCCC-CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccc
Q 007454 465 LVKIYGPKIRF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD 543 (603)
Q Consensus 465 lv~Iygp~~~~-~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 543 (603)
++++.|.... ..++++.|.+++ ..+++++| .++||.++.|..|.
T Consensus 303 -~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l-~~~gi~v~~g~~~~--------------------------- 347 (385)
T 2bkw_A 303 -LTSVSRYPSNMSAHGLTAVYVAD------PPDVIAFL-KSHGVVIAGGIHKD--------------------------- 347 (385)
T ss_dssp -CEESSCSSSTTBCSSCEEEECSC------HHHHHHHH-HHTTEECBCCCCTT---------------------------
T ss_pred -ceecccCcccccCCceEEEecCC------HHHHHHHH-HHCCeEEeCCCCcc---------------------------
Confidence 5666543212 368899999864 12344445 56899998875431
Q ss_pred cccccCCCCCCCEEEEe-cC---CCCCHHHHHHHHHHHHHHHh
Q 007454 544 NNRKDKANLGITVVTAS-LG---YLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 544 ~~~~~~~~~~~g~VR~S-lg---~~tt~eDVd~l~~~l~~~l~ 582 (603)
...+.+|+| ++ +.+|.|||+++++.|+++++
T Consensus 348 --------~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 348 --------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp --------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred --------cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 012589999 77 46899999999999998864
No 31
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.92 E-value=7.5e-23 Score=213.01 Aligned_cols=331 Identities=12% Similarity=0.060 Sum_probs=227.4
Q ss_pred eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC--
Q 007454 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE-- 187 (603)
Q Consensus 110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~-- 187 (603)
+|+.+.|....++.+++++.+.+ + +.++......+++.|++|++++|.+.
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~-----------------------~-----~~~~~~~~~~~~~l~~~la~~~g~~~~~ 56 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDS-----------------------C-----TWDDDYNIGVVEQIRQQLTALATASEGY 56 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCC-----------------------C-----TTSHHHHTTTHHHHHHHHHHHHCSSSSE
T ss_pred cccccCCCcCCCHHHHHHHhhhh-----------------------c-----CCCHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 56666776677888888865421 0 00111112456789999999999322
Q ss_pred CcEEEecc-----------------------CchHHH-HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454 188 NDYVYDYE-----------------------SEAVEA-MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ 243 (603)
Q Consensus 188 ~e~vf~~e-----------------------s~sV~~-~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~ 243 (603)
++++++.. ...... +...++..|+++..+++++ .+.++.++|++.|..+ ++
T Consensus 57 ~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~----~~ 131 (366)
T 1m32_A 57 TSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-VARPDVQAIDAILNAD----PT 131 (366)
T ss_dssp EEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-TSCCCHHHHHHHHHHC----TT
T ss_pred cEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcC----CC
Confidence 24655321 011111 3445667799999999874 7789999999999752 24
Q ss_pred eeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 244 RGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
++++.+++.+|.||.++|++.+ ++|+++|+++++|+++..+. .++++..+++|++++|+||++++ |.|+|++++++
T Consensus 132 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~~K~~~~-~~g~G~~~~~~ 208 (366)
T 1m32_A 132 ISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGG--IPMDIAALHIDYLISSANKCIQG-VPGFAFVIARE 208 (366)
T ss_dssp CCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-CSSEEEEEEEH
T ss_pred eEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccC--cCccccccCccEEEecCcccccC-CCceEEEEECH
Confidence 7899999999999999999855 58999999999999998887 57888878899999999997744 88999999999
Q ss_pred CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454 323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE 402 (603)
Q Consensus 323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~ 402 (603)
+.++.+.+... +.. ......+.. +. .... ...+|+|..+++++.
T Consensus 209 ~~~~~~~~~~~-~~~---~~~~~~~~~-------~~----~~~~--~~~~~~~~~~~~a~~------------------- 252 (366)
T 1m32_A 209 QKLAACKGHSR-SLS---LDLYAQWRC-------ME----DNHG--KWRFTSPTHTVLAFA------------------- 252 (366)
T ss_dssp HHHTTCTTCCS-CST---TCHHHHHHH-------HH----HTTT--CCSSCCCHHHHHHHH-------------------
T ss_pred HHHHhhcCCCC-Ccc---ccHHHHHhh-------hc----ccCC--CCCCCCCHHHHHHHH-------------------
Confidence 87766654211 100 000000000 00 0000 124677777776654
Q ss_pred hhhhhhhccCCCCCCCchhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEE
Q 007454 403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL 481 (603)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG-l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~iv 481 (603)
++++.+.+.| ++.+.++.+.+.++|.+.|.++ | +++++|.. ...+.++
T Consensus 253 ---------------------~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~------~---~~~~~~~~-~~~~~~~ 301 (366)
T 1m32_A 253 ---------------------QALKELAKEGGVAARHQRYQQNQRSLVAGMRAL------G---FNTLLDDE-LHSPIIT 301 (366)
T ss_dssp ---------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT------T---CCBSSCGG-GBCSSEE
T ss_pred ---------------------HHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC------C---CeeccCch-hcCceEE
Confidence 5888777777 8899999999999999999876 1 34555421 1234488
Q ss_pred EEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec
Q 007454 482 AFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL 561 (603)
Q Consensus 482 sFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl 561 (603)
.|.+++..+ +....+.+.+.++||.++.|..|. .+.+|+|+
T Consensus 302 ~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~-------------------------------------~~~iRi~~ 342 (366)
T 1m32_A 302 AFYSPEDPQ--YRFSEFYRRLKEQGFVIYPGKVSQ-------------------------------------SDCFRIGN 342 (366)
T ss_dssp EEECCCCTT--CCHHHHHHHHHHTTEECEECCCSS-------------------------------------SCEEEEEC
T ss_pred EEEcCccCC--CCHHHHHHHHHHCCEEEECCcCCC-------------------------------------CCEEEEec
Confidence 998874111 233445444456699999876541 15899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 007454 562 GYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 562 g~~tt~eDVd~l~~~l~~~l~ 582 (603)
+.++|.+||+++++.|+++++
T Consensus 343 ~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 343 IGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 32
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.92 E-value=1.4e-23 Score=220.65 Aligned_cols=328 Identities=12% Similarity=0.081 Sum_probs=230.0
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~ 188 (603)
++|+-+.+-.++++.+++++.+.+.. + ++....+.++++|+.+++++|++++
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~~---------------------------~-~~~~~~~~~~~~~~~la~~~g~~~~ 70 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVPY---------------------------F-RTTEFSSTMLENEKFMLEYAKAPEG 70 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCCC---------------------------C-SSHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CceeecCCCCCCcHHHHHHhcCCCCC---------------------------C-CCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 46677788889999999998653210 0 0112346788999999999999764
Q ss_pred -cEEE-ecc-CchH-----------------------HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454 189 -DYVY-DYE-SEAV-----------------------EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 242 (603)
Q Consensus 189 -e~vf-~~e-s~sV-----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~ 242 (603)
+++| +.. ++++ ..+...+...|+++..+++++ +..++.++|++.+. +
T Consensus 71 ~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~------~ 143 (376)
T 3f0h_A 71 SKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEH-GKKLTKEKLYEYDN------Q 143 (376)
T ss_dssp CEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCT-TCCCCHHHHHTTTT------S
T ss_pred ceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHhhc------c
Confidence 6665 211 1111 112345667799999999874 67889999988664 3
Q ss_pred CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454 243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK 321 (603)
Q Consensus 243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk 321 (603)
++++|++++.+|.||.++|++.| ++|+++|+++++|++|.++. .++++..+++|++++|+||+||+ |.|+|+++++
T Consensus 144 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~~d~~~~s~~K~l~~-~~G~g~~~~~ 220 (376)
T 3f0h_A 144 NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLA--DPFNMNECGADVMITGSQKVLAC-PPGISVIVLA 220 (376)
T ss_dssp CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHTCSEEEEETTTTTCC-CSSCEEEEEC
T ss_pred CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccC--ccccccccCccEEEecCcccccC-CCceEEEEEC
Confidence 68999999999999999999866 58999999999999999887 57888888899999999999986 7799999999
Q ss_pred CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454 322 KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA 401 (603)
Q Consensus 322 k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~ 401 (603)
++..+.+.+...++... .....+ .. .. .. ....|++...++++.
T Consensus 221 ~~~~~~~~~~~~~~~~~---~~~~~~--~~-----~~------~~--~~~~~~~~~~~~a~~------------------ 264 (376)
T 3f0h_A 221 PRGVERVEKSKVRTMYF---DLKDAL--KN-----QE------RG--QTPFTPAVGILLQIN------------------ 264 (376)
T ss_dssp HHHHHHHHTCCCCCSTT---CHHHHH--HH-----HT------TT--CCSSCCCHHHHHHHH------------------
T ss_pred HHHHHHhhcCCCCceee---cHHHHH--hh-----cc------cC--CCCCCCcHHHHHHHH------------------
Confidence 98766555422211100 000000 00 00 00 012344444444443
Q ss_pred hhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCE
Q 007454 402 EADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA 480 (603)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~i 480 (603)
++++.+.+. |++.+.++.+.+.++|.+.|.++. ++++.+. ....+
T Consensus 265 ----------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~~~~~~---~~~~~ 310 (376)
T 3f0h_A 265 ----------------------ERLKEIKKHGGADAEVARIASQAADFRAKIKDLP---------FELVSES---PANGV 310 (376)
T ss_dssp ----------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS---------EEECCSS---BBTTE
T ss_pred ----------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC---------CccCccc---cCceE
Confidence 688888777 589999999999999999998752 5666542 34567
Q ss_pred EEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEe
Q 007454 481 LAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS 560 (603)
Q Consensus 481 vsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~S 560 (603)
+.+...+.++ .++.++|.++.||.++.|.- ....+.+|+|
T Consensus 311 ~~~~~~~~~~----~~l~~~l~~~~gi~v~~g~~------------------------------------~~~~~~lRis 350 (376)
T 3f0h_A 311 TSVHPTTANA----YDIFLKLKDEYGIWICPNGG------------------------------------EMKDTIFRVG 350 (376)
T ss_dssp EEEEESSSCH----HHHHHHHHHHSSEECEECCG------------------------------------GGTTTCEEEE
T ss_pred EEEeCCCCCH----HHHHHHHHHhCCEEEecCcc------------------------------------ccCCCEEEEe
Confidence 7776544332 23455666666999987720 0112589999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 561 LGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 561 lg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
++.++|.|||+++++.|++++++.
T Consensus 351 ~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 351 HIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988653
No 33
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.91 E-value=1.1e-23 Score=220.75 Aligned_cols=331 Identities=13% Similarity=0.059 Sum_probs=226.8
Q ss_pred CCceeeec-CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHH-HHHHcC
Q 007454 107 SNHTCLDY-FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR-IMDFLN 184 (603)
Q Consensus 107 ~~~vYLDy-aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~-Ia~~ln 184 (603)
++.+|||+ ++.+++++.+++++.+.+... +.. ..+|. +..+......+.+.|+. |++++|
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~--------~~~-------~~~~~---~~~~~~~~~~~~~l~~~~la~~~~ 68 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGY--------SVC-------DFCTT---GRLDEIKTPPIHDFIHNQLPKFLG 68 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------------------------CCHHHHHHTHHHHHTT
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhc--------ccC-------Ccccc---ccchhhHHHHHHHHHHHHHHHHcC
Confidence 46799999 778899999999988765321 000 00110 11111123456789999 999999
Q ss_pred CCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEe--ccCCccccCHHHHHHHHhhcCCC
Q 007454 185 ISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAE--FSWPRLRINSEKLRKMVVSKGKK 240 (603)
Q Consensus 185 a~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~--~~~~~g~i~~~~L~~~l~~~~~~ 240 (603)
++ +++|+... +++ ......++..|+++..++ .+ +++.++.++|++.|...+.
T Consensus 69 ~~--~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~- 144 (371)
T 2e7j_A 69 CD--VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY-PDYAITPENFAQTIEETKK- 144 (371)
T ss_dssp SS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT-TTCCCCHHHHHHHHHHHTT-
T ss_pred CC--EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccC-CCCCcCHHHHHHHHHhhcc-
Confidence 87 77765331 121 122333567899999998 76 3678999999999974211
Q ss_pred CCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 007454 241 KKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLF 319 (603)
Q Consensus 241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~ 319 (603)
.+++++|++++.+|.||.++|++.+ ++|+++|+++++|+++..+. .++++..+++|++++|+||+|+. |.|+|+++
T Consensus 145 ~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s~sK~~~~-~~~~G~~~ 221 (371)
T 2e7j_A 145 RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGADFIVGSGHKSMAA-SGPIGVMG 221 (371)
T ss_dssp TSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTCSEEEEEHHHHSSC-CSSCEEEE
T ss_pred cCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCC--CCCChhhcCCCEEEecCCcCCCC-CCCcEEEE
Confidence 1368999999999999999999855 58999999999999998887 46777777899999999998775 77999999
Q ss_pred EeCCCCcC-cCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454 320 VKKSTVPI-LVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV 398 (603)
Q Consensus 320 vkk~~~~~-L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~ 398 (603)
++++.++. +.+...++... .. ++.||++...++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~--------------------------~~--~~~~~~~~~~~~a~~--------------- 258 (371)
T 2e7j_A 222 MKEEWAEIVLRRSEKYKNKE--------------------------VE--LLGCTARGATIITLM--------------- 258 (371)
T ss_dssp ECTTTTTTTTCBCSSCTTSB--------------------------GG--GTTCCCCSHHHHHHH---------------
T ss_pred EechhhhhhccccccCcccc--------------------------cc--cccCCcCHHHHHHHH---------------
Confidence 99988776 66533321100 01 357888888776654
Q ss_pred hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454 399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG--RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 476 (603)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~--~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~ 476 (603)
.+++++.. .+.++. +.+++++.+.|.++ | +++++|.. .
T Consensus 259 -------------------------~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~------~---~~~~~~~~--~ 298 (371)
T 2e7j_A 259 -------------------------ASFPHVRE----RIKRWDEEVEKARRFAAEMEKL------G---IKQLGDNP--H 298 (371)
T ss_dssp -------------------------HHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT------T---CEEESSSS--C
T ss_pred -------------------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc------C---cEEecCCC--c
Confidence 46766554 566777 88999999999876 1 56777632 2
Q ss_pred CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454 477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV 556 (603)
Q Consensus 477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 556 (603)
+++++.|.++ + ...+.+.+.++||.++. ... ... . .+...+.
T Consensus 299 ~~~~~~~~~~--~-----~~~~~~~l~~~gi~~~~-~~~-----------------~~~-------~------~g~~~~~ 340 (371)
T 2e7j_A 299 NHDLMFFHAE--V-----LYEISKKAKGGRFFLYR-ELK-----------------SRK-------I------HGIKPGL 340 (371)
T ss_dssp CSSEEEEECH--H-----HHHHHHHSSSGGGHHHH-HHH-----------------HTT-------E------ECSCTTC
T ss_pred cCceEEEECC--C-----HHHHHHHHHHCCEEEEe-ccc-----------------ccc-------c------cCCCCCc
Confidence 5789999886 1 23344444467887642 000 000 0 0111368
Q ss_pred EE-EecCCC-CCHHHHHHHHHHHHHHHhh
Q 007454 557 VT-ASLGYL-ANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 557 VR-~Slg~~-tt~eDVd~l~~~l~~~l~~ 583 (603)
|| +|++.+ +|.+||+++++.|++++++
T Consensus 341 iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 341 TRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp CSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 99 999999 9999999999999998753
No 34
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.91 E-value=9.7e-23 Score=214.54 Aligned_cols=336 Identities=15% Similarity=0.107 Sum_probs=237.9
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~ 187 (603)
+.-||++.+-.++++.+++++.+.+. . + +.....+.+++.|+.+++++|+++
T Consensus 22 ~~~~~~~p~p~~~~~~v~~a~~~~~~----------------------~----~--~~~~~~~~~~~l~~~la~~~~~~~ 73 (393)
T 3kgw_A 22 PTRLLLGPGPSNLAPRVLAAGSLRMI----------------------G----H--MQKEMLQIMEEIKQGIQYVFQTRN 73 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHTTCCCC----------------------C----T--TSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccceeccCCCCCCCHHHHHHhccccc----------------------C----c--ccHHHHHHHHHHHHHHHHHhCCCC
Confidence 35689999999999999999765211 0 0 001124677889999999999976
Q ss_pred Cc-EEEeccC----------------------chH--HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454 188 ND-YVYDYES----------------------EAV--EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 242 (603)
Q Consensus 188 ~e-~vf~~es----------------------~sV--~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~ 242 (603)
.+ ++|+... .+. ..+...++..|+++..+++++ ++.++.++|++.|...
T Consensus 74 ~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~----- 147 (393)
T 3kgw_A 74 PLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKP-GEHYTLQEVEEGLAQH----- 147 (393)
T ss_dssp SEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH-----
T ss_pred CcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHhhC-----
Confidence 64 6553211 111 123455677899999999874 6789999999999752
Q ss_pred CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454 243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK 321 (603)
Q Consensus 243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk 321 (603)
++++|++.+.+|.||.++|++.+ ++|+++|+++++|+++..+. .++++..+++|++++|+||+|++ |.|+|+++++
T Consensus 148 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~--~~~~~~~~~~d~~~~s~sK~~~~-~~g~g~~~~~ 224 (393)
T 3kgw_A 148 KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGG--VPIYMDQQGIDIMYSSSQKVLNA-PPGISLISFN 224 (393)
T ss_dssp CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTT--SCCCTTTTTCCEEEEESSSTTCC-CSSCEEEEEC
T ss_pred CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccC--cccchhhcCCCEEEecCcccccC-CCceeEEEEC
Confidence 58999999999999999999855 68999999999999998776 57888888999999999997654 7899999999
Q ss_pred CCCCcCcCCCCCCC-ceec-cccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454 322 KSTVPILVDNTSSG-MVSL-LPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR 399 (603)
Q Consensus 322 k~~~~~L~p~~~gG-~v~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~ 399 (603)
++.++.+.+...+. .... .......|.... ..+ +..+|+|..+++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~a~~---------------- 274 (393)
T 3kgw_A 225 DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEG------------ETR--VIHHTTPVTSLYCLR---------------- 274 (393)
T ss_dssp HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSS------------SCC--CCCCCCCHHHHHHHH----------------
T ss_pred HHHHHHHhccCCCCCceeecHHHHHHhhhhcc------------ccC--CCCCCCCHHHHHHHH----------------
Confidence 88766554322211 0000 000000010000 011 467899988877765
Q ss_pred hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454 400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP 479 (603)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ 479 (603)
++++.+.+.+++.+.++.+.+.++|.+.|.++. ++++.+......+.
T Consensus 275 ------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~~~~~~~~~~~ 321 (393)
T 3kgw_A 275 ------------------------ESLALIAEQGLENCWRRHREATAHLHKHLQEMG---------LKFFVKDPEIRLPT 321 (393)
T ss_dssp ------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT---------CCBSSSSGGGBCSS
T ss_pred ------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC---------CeeccCChhhcCCe
Confidence 578877777899999999999999999999862 34454432122356
Q ss_pred EEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454 480 ALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT 558 (603)
Q Consensus 480 ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR 558 (603)
++.|.+++. ++.. +.++|.++.||.++.|..|. ..+.||
T Consensus 322 ~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~------------------------------------~~~~iR 361 (393)
T 3kgw_A 322 ITTVTVPAG----YNWRDIVSYVLDHFSIEISGGLGPT------------------------------------EERVLR 361 (393)
T ss_dssp EEEEECCTT----BCHHHHHHHHHHHHCEECBCCCGGG------------------------------------TTTEEE
T ss_pred EEEEeCCCC----CCHHHHHHHHHHhCCEEEeCCcccC------------------------------------CCCEEE
Confidence 777887531 2333 45556665699999874321 125899
Q ss_pred Eec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454 559 ASL-GYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 559 ~Sl-g~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+|+ ++.+|.+|++++++.|++++++
T Consensus 362 i~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 362 IGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp EECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHh
Confidence 998 7777999999999999998864
No 35
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.91 E-value=1.6e-23 Score=218.75 Aligned_cols=323 Identities=12% Similarity=0.112 Sum_probs=224.5
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccc---cchHHHHHHHHHHHHHHHcC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLH---GGQESGLESAMKKRIMDFLN 184 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~---g~~~~~~~~~aR~~Ia~~ln 184 (603)
++|++++|..++|+.+++++.+.+... +|++.. +.+ +....+.++++|+.+++++|
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g 62 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKELLNF--------------------NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ 62 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSS--------------------TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ceEeecCCCcCCCHHHHHHHHHHhhhh--------------------ccccccccccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999988765321 222211 101 22245678899999999999
Q ss_pred CC-CCcEEEeccC--chHHH-----------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHH-HHhhc
Q 007454 185 IS-ENDYVYDYES--EAVEA-----------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRK-MVVSK 237 (603)
Q Consensus 185 a~-~~e~vf~~es--~sV~~-----------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~-~l~~~ 237 (603)
++ +++++|+..+ +++.. ....++..| +++.++++..++.++.++|++ .|.
T Consensus 63 ~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~-- 139 (360)
T 1w23_A 63 IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLN-- 139 (360)
T ss_dssp CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC--
T ss_pred CCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHHHHHHHhC-CeEEeecccccCcCCccchHhhccC--
Confidence 96 4678776432 11110 122345679 999999863255677778877 663
Q ss_pred CCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454 238 GKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC 317 (603)
Q Consensus 238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~ 317 (603)
++|++|++++.+|.||.++| .+++++|++|++|+++..+. .++++..+ |++++|+||+|| |.|+|+
T Consensus 140 ----~~~k~v~~~~~~nptG~~~~----~i~~~~~~~li~D~a~~~~~--~~~~~~~~--di~~~s~sK~~~--~~G~G~ 205 (360)
T 1w23_A 140 ----ENDAYLHITSNNTIYGTQYQ----NFPEINHAPLIADMSSDILS--RPLKVNQF--GMIYAGAQKNLG--PSGVTV 205 (360)
T ss_dssp ----TTEEEEEEESEETTTTEECS----SCCCCCSSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTTS--CTTCEE
T ss_pred ----CCCCEEEEeCCCCCcceecc----cccccCCceEEEechhhcCC--CCcCcccC--CEEEEEcccccC--CCCcEE
Confidence 36999999999999999998 23348999999999999887 57777765 999999999999 779999
Q ss_pred EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454 318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 397 (603)
Q Consensus 318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~ 397 (603)
++++++.++.+.+.. ++.+.. . .+ .+ .+ ...||++..+++++.
T Consensus 206 ~~~~~~~~~~~~~~~-~~~~~~----~-~~--~~-------------~~--~~~~~~~~~~~~~~~-------------- 248 (360)
T 1w23_A 206 VIVKKDLLNTKVEQV-PTMLQY----A-TH--IK-------------SD--SLYNTPPTFSIYMLR-------------- 248 (360)
T ss_dssp EEEEHHHHCSCCTTC-CGGGCH----H-HH--HH-------------TT--TCSSCCCHHHHHHHH--------------
T ss_pred EEEcHHHHhhcccCC-cchhhh----h-hh--hh-------------cc--CCCCCCCHHHHHHHH--------------
Confidence 999988776665432 211110 0 00 00 01 346888888877765
Q ss_pred HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454 398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 476 (603)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~ 476 (603)
.+++++.+. +++.+.++.+.+++++.+.|.++. + ++..+.+. ..
T Consensus 249 --------------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~--~~~~~~~~--~~ 293 (360)
T 1w23_A 249 --------------------------NVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN-----G--FYVGHAEK--GS 293 (360)
T ss_dssp --------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT-----T--SSEESSCG--GG
T ss_pred --------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc-----C--cccccCCc--hh
Confidence 588877766 689999999999999999998763 1 11332111 12
Q ss_pred CCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454 477 RGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 555 (603)
Q Consensus 477 rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 555 (603)
+++ ++.|.+++. .....+.+.+.++||.++.|.. . .+
T Consensus 294 ~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~-------------------------------------~-~~ 331 (360)
T 1w23_A 294 RSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNGHR-------------------------------------S-VG 331 (360)
T ss_dssp BCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBCCT-------------------------------------T-TC
T ss_pred ccCcEEEEEcCCC----ccHHHHHHHHHHCCeeeecCCC-------------------------------------C-CC
Confidence 444 999988652 1122233334568888754421 0 25
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 556 VVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.||+|++.++|.+||+++++.|++++.
T Consensus 332 ~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 332 GCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 799999999999999999999998865
No 36
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=222.91 Aligned_cols=189 Identities=12% Similarity=0.043 Sum_probs=137.7
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHHHHHHHHHHHHHHHcCCC
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
...||||+.+++.+..++..+... ..|++.. +..+....++++++|+.+++++|++
T Consensus 108 ~p~~~~~~~~~~~~~~~~~~~l~~-----------------------~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~ 164 (515)
T 2jis_A 108 HPRFFNQLFSGLDPHALAGRIITE-----------------------SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS 164 (515)
T ss_dssp STTEESSSCCCCCHHHHHHHHHHH-----------------------HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeeCCCCHHHHHHHHHHH-----------------------HhccCCCchhhchHHHHHHHHHHHHHHHHhCCC
Confidence 457999999999888887754321 1233221 1122335678899999999999999
Q ss_pred CCcEEEeccC-chHHHHHHH-----------------------------------HHHcCC---EEEEEeccCCccccCH
Q 007454 187 ENDYVYDYES-EAVEAMIRT-----------------------------------SEKRGA---RVMSAEFSWPRLRINS 227 (603)
Q Consensus 187 ~~e~vf~~es-~sV~~~~~~-----------------------------------a~~~Ga---~V~~~~~~~~~g~i~~ 227 (603)
+++++|+... +++...+.. ++..|. +|+.++.+ ++++++.
T Consensus 165 ~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~-~~~~~d~ 243 (515)
T 2jis_A 165 SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD-ERGKMVP 243 (515)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-TTSCBCH
T ss_pred CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecC-CCCcCCH
Confidence 8888776432 222111111 222244 67777776 4788999
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCC-----CCCC-CCcEE
Q 007454 228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFG-----LSLV-RPDFL 300 (603)
Q Consensus 228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ld-----ls~~-~~Dfl 300 (603)
++|++.|...+....++.+|++++.+|.||.+.|++.| ++|+++|+++|+|+++.++. .+.+ +..+ ++|++
T Consensus 244 ~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~--~~~~~~~~~~~g~~~aD~v 321 (515)
T 2jis_A 244 EDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSV--LLSQTHRHLLDGIQRADSV 321 (515)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGG--GGCTTTGGGGTTGGGCSEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHH--HhChhhHhhcCCCccCCEE
Confidence 99999997522112358999999999999999999966 58999999999999988876 3443 4444 89999
Q ss_pred EEcccccCCCCCCceEEEEEeCC
Q 007454 301 ICSFYQIFGENPSGFGCLFVKKS 323 (603)
Q Consensus 301 v~S~hK~fG~~P~G~G~L~vkk~ 323 (603)
++|+|||||. |.|+|+|++|+.
T Consensus 322 ~~s~hK~l~~-p~g~G~l~~~~~ 343 (515)
T 2jis_A 322 AWNPHKLLAA-GLQCSALLLQDT 343 (515)
T ss_dssp EECTTSTTCC-CSCCEEEEESCC
T ss_pred EECcccccCC-CCCeeEEEEeCh
Confidence 9999999887 889999999987
No 37
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.90 E-value=5.4e-21 Score=207.90 Aligned_cols=308 Identities=11% Similarity=-0.018 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCc-----EEEeccC-chH---------------------------------HHHHHHHHH
Q 007454 168 ESGLESAMKKRIMDFLNISEND-----YVYDYES-EAV---------------------------------EAMIRTSEK 208 (603)
Q Consensus 168 ~~~~~~~aR~~Ia~~lna~~~e-----~vf~~es-~sV---------------------------------~~~~~~a~~ 208 (603)
..++++++++.+++++|+++++ ++++... +++ ..+...++.
T Consensus 79 ~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~~h~~~~~~~~~ 158 (452)
T 2dgk_A 79 SAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARY 158 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECCCcHHHHHHHHH
Confidence 4678899999999999998765 5554321 111 122333445
Q ss_pred cCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhC------CcEEEEeccc
Q 007454 209 RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEN------DWHILIDACA 281 (603)
Q Consensus 209 ~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~------g~~vlvDAaq 281 (603)
.|++++.+++++.++.++.++|++.|.. +|++|++++.+|.||.+.|++.| ++|+++ |+++|||+++
T Consensus 159 ~G~~v~~v~~~~~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~ 232 (452)
T 2dgk_A 159 WDVELREIPMRPGQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS 232 (452)
T ss_dssp TTCEEEECCCBTTBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTT
T ss_pred cCceEEEEecCCCCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEccc
Confidence 6888889988743689999999999963 68999999999999999999966 488884 9999999998
Q ss_pred cCCC-----CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC-CC-cCc--CCCCCCCceecccccccccccccc
Q 007454 282 LGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS-TV-PIL--VDNTSSGMVSLLPAKKQLWLTDEF 352 (603)
Q Consensus 282 ~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~-~~-~~L--~p~~~gG~v~~~~~~~~~~~~~~~ 352 (603)
.++. .-.+++++..++|++++|+|||++. |.|+|++++|+. .+ ..+ .+.+.+|... .+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----- 299 (452)
T 2dgk_A 233 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGCGWVIWRDEEALPQELVFNVDYLGGQIG-------TF----- 299 (452)
T ss_dssp GGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEECCTTCCEE-------EC-----
T ss_pred HHHHHHhhCccchhhcCCCCCcEEEECcccccCC-CCCeEEEEEcCHHHHHHHhccCccccCCCCC-------Cc-----
Confidence 7632 0024566666899999999998755 889999999864 22 222 2333332110 00
Q ss_pred CCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc
Q 007454 353 SSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL 432 (603)
Q Consensus 353 ~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i 432 (603)
-..|+.++..++++. .++..+..-
T Consensus 300 ----------------~~~~~r~~~~~~~~~----------------------------------------aal~~lg~~ 323 (452)
T 2dgk_A 300 ----------------AINFSRPAGQVIAQY----------------------------------------YEFLRLGRE 323 (452)
T ss_dssp ----------------CSCCSCBCHHHHHHH----------------------------------------HHHHHHHHH
T ss_pred ----------------ccCCCChhHHHHHHH----------------------------------------HHHHHHhHH
Confidence 013344443333332 355554445
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeC
Q 007454 433 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG 512 (603)
Q Consensus 433 Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G 512 (603)
|+..+.++...++++|.+.|.++. .++++.|.....+.++|+|.+++.....++...+.+.+.++||.++..
T Consensus 324 g~~~~~~~~~~~a~~l~~~L~~~~--------~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~ 395 (452)
T 2dgk_A 324 GYTKVQNASYQVAAYLADEIAKLG--------PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF 395 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS--------SEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--------CeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeee
Confidence 788889999999999999999763 277776532124678999999764322244334444445679987652
Q ss_pred cccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhhccccc
Q 007454 513 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARW 591 (603)
Q Consensus 513 ~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~~~~~~ 591 (603)
+.+.. ..+.+++|+|++.++|.|||++|++.|++.+..---..+.|
T Consensus 396 --~~~~~-------------------------------~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~~~~~~ 441 (452)
T 2dgk_A 396 --TLGGE-------------------------------ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHPKLQ 441 (452)
T ss_dssp --ECSTT-------------------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHCGGGT
T ss_pred --eCCcc-------------------------------cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 11110 01235899999999999999999999999876532333455
No 38
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.90 E-value=5.9e-21 Score=211.24 Aligned_cols=330 Identities=14% Similarity=0.019 Sum_probs=227.9
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC-
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS- 186 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~- 186 (603)
...+|....++++++.+.+++...+... ..++.. + ....++++++++.+++++|++
T Consensus 56 p~~~l~s~~t~~~~~~v~~~l~~~~~~~-------------------~~~~~~---~-p~~~~le~~~~~~la~l~g~~~ 112 (502)
T 3hbx_A 56 PRLNLASFVTTWMEPECDKLIMSSINKN-------------------YVDMDE---Y-PVTTELQNRCVNMIAHLFNAPL 112 (502)
T ss_dssp GGGBTTCCSCCCCCHHHHHHHHHTTTCB-------------------TTCTTT---C-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCceeccccCCCCCHHHHHHHHHHhccC-------------------CCChhc---C-hhHHHHHHHHHHHHHHHhCCCc
Confidence 3455666667888999999887754321 122211 1 125688889999999999998
Q ss_pred -CCcEEE---eccC-c----------------------------------hHHHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454 187 -ENDYVY---DYES-E----------------------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINS 227 (603)
Q Consensus 187 -~~e~vf---~~es-~----------------------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~ 227 (603)
++++++ +..+ + +...+...++..|++++.+++++.++.++.
T Consensus 113 ~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~ 192 (502)
T 3hbx_A 113 EEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP 192 (502)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCH
T ss_pred ccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCH
Confidence 555432 2111 1 112233445566888999998864589999
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhC------CcEEEEecccc-------CCCCCCCCCCC
Q 007454 228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQEN------DWHILIDACAL-------GPKDMDSFGLS 293 (603)
Q Consensus 228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~------g~~vlvDAaq~-------~~~~m~~ldls 293 (603)
++|++.|.. +|++|++.+.+|.||.+.|++.|. +|+++ |+++|||+|+. .+. .+.++.
T Consensus 193 ~~l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~--~~~~~~ 264 (502)
T 3hbx_A 193 QQAVDMVDE------NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPE--LEWDFR 264 (502)
T ss_dssp HHHHHHCCT------TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT--CCCSTT
T ss_pred HHHHHHHhh------CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcc--cccccC
Confidence 999999864 689999999999999999999664 88888 99999999986 343 466777
Q ss_pred CCCCcEEEEcccccCCCCCCceEEEEEeCCC-C-cCc--CCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454 294 LVRPDFLICSFYQIFGENPSGFGCLFVKKST-V-PIL--VDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 369 (603)
Q Consensus 294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~-~-~~L--~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 369 (603)
..++|++++|+|||++. |.|+|++++++.. + ..+ .+.+.|+... . + -
T Consensus 265 ~~~~D~v~~s~hK~l~~-p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~------~-~---------------------~ 315 (502)
T 3hbx_A 265 LPLVKSINVSGHKYGLV-YAGIGWVIWRNKEDLPEELIFHINYLGADQP------T-F---------------------T 315 (502)
T ss_dssp STTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEECSSSSCEE------E-C---------------------C
T ss_pred CCCceEEEECcccccCC-CCCeEEEEEeCHHHhhHHhccCcccccCCCC------C-c---------------------c
Confidence 77999999999999865 8899999998643 2 111 2233332110 0 0 0
Q ss_pred ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007454 370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 449 (603)
Q Consensus 370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~ 449 (603)
-.++.+...++++. .++..+...|+..+.++...++++|.
T Consensus 316 ~~~sr~~~~~~a~~----------------------------------------~al~~lg~~g~~~~~~~~~~~a~~l~ 355 (502)
T 3hbx_A 316 LNFSKGSSQVIAQY----------------------------------------YQLIRLGHEGYRNVMENCRENMIVLR 355 (502)
T ss_dssp SCCSCBSHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344333444433 46665555578888899999999999
Q ss_pred HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454 450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 529 (603)
Q Consensus 450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~ 529 (603)
+.|.++. .++++.+. ...++|+|.+.+..+ ++...+.+.+.++||.++.. ..+.
T Consensus 356 ~~L~~~~--------~~~~~~~~---~~~~~v~f~~~~~~~--~~~~~l~~~L~~~Gi~v~~~---~~p~---------- 409 (502)
T 3hbx_A 356 EGLEKTE--------RFNIVSKD---EGVPLVAFSLKDSSC--HTEFEISDMLRRYGWIVPAY---TMPP---------- 409 (502)
T ss_dssp HHHHTTT--------CEEECSCS---SSSSEEEEEESSCSS--CCHHHHHHHHHTTTCBCCEE---ECCT----------
T ss_pred HHHHhCC--------CEEEEeCC---CCceEEEEEecCCCc--CCHHHHHHHHHhCCcEEeec---cCCc----------
Confidence 9999763 27887652 357899999976332 44444555556789988642 1100
Q ss_pred HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+...+|+|++..+|.|||++|++.|++.++.
T Consensus 410 --------------------~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~ 443 (502)
T 3hbx_A 410 --------------------NAQHITVLRVVIREDFSRTLAERLVIDIEKVMRE 443 (502)
T ss_dssp --------------------TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------ccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 0112358999999999999999999999988764
No 39
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.90 E-value=9.5e-22 Score=216.69 Aligned_cols=354 Identities=12% Similarity=0.056 Sum_probs=218.7
Q ss_pred hHHHHHHhhccCcC-CCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcccccc--chH
Q 007454 92 QIDQIRAKEYYQLS-LSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHG--GQE 168 (603)
Q Consensus 92 ~vd~iR~~efp~L~-~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g--~~~ 168 (603)
-++++++.-.|... ..+..||||+++++.++.+++++..+.. |++ .+.++ ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~-----------------------n~~-~~~~~~~~~~ 138 (497)
T 2qma_A 83 VIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAAL-----------------------NQS-MDSWDQASSA 138 (497)
T ss_dssp HHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHH-----------------------CCC-TTCGGGCHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhh-----------------------ccc-ccchhhChHH
Confidence 34677765455542 1456899999999999999998764311 111 11122 234
Q ss_pred HHHHHHHHHHHHHHcCCCC-CcEEEeccC-chHHHHHHH-----------------------------------------
Q 007454 169 SGLESAMKKRIMDFLNISE-NDYVYDYES-EAVEAMIRT----------------------------------------- 205 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~lna~~-~e~vf~~es-~sV~~~~~~----------------------------------------- 205 (603)
.++++++|+.+++++|+++ ++++|+... +++...+..
T Consensus 139 ~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~ 218 (497)
T 2qma_A 139 TYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKS 218 (497)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHH
Confidence 6777888999999999976 677776432 222111111
Q ss_pred HHHcCC---EEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc
Q 007454 206 SEKRGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA 281 (603)
Q Consensus 206 a~~~Ga---~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq 281 (603)
++..|. +|+.++++ .+++++.++|++.|..++....++.+|++++.+|.||.+.|++.| ++|+++|+++|+|+++
T Consensus 219 ~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~ 297 (497)
T 2qma_A 219 ASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAY 297 (497)
T ss_dssp HHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETT
T ss_pred HHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhh
Confidence 112233 67777777 478899999999997521111124489999999999999999966 5899999999999999
Q ss_pred cCCCCCCCCC----CCCC-CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCC
Q 007454 282 LGPKDMDSFG----LSLV-RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSC 355 (603)
Q Consensus 282 ~~~~~m~~ld----ls~~-~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~ 355 (603)
.++. .+.+ +..+ ++|++++|+||||+. |.|+|+|++|+... +++.... +... ...... +
T Consensus 298 ~~~~--~~~~~~~~~~gi~~~D~i~~s~hK~l~~-p~~~G~l~~~~~~~--~~~~~~~~~yl~---~~~~~~-~------ 362 (497)
T 2qma_A 298 GGAL--ILSSHKSRLKGVERAHSISVDFHKLFYQ-TISCGALLVNDKSN--FKFLLHHADYLN---REHDEL-P------ 362 (497)
T ss_dssp GGGG--GGSTTGGGGTTGGGCSEEEEETTTTTCC-CSSCEEEEESCGGG--GGGGCC-----------------------
T ss_pred hHHH--HhCcchHhhcCcccCCEEEEcchhccCC-CcceEEEEEeCHHH--HHHhcCCchhcC---CccccC-C------
Confidence 8876 3444 3334 789999999998876 88999999987642 2221111 0000 000000 0
Q ss_pred CCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH
Q 007454 356 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 435 (603)
Q Consensus 356 ~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~ 435 (603)
++- ... . .++-.+.++ .+ ..+++.+...|+.
T Consensus 363 ~~~-----~~~--~-~~~r~~~al-~~----------------------------------------~~~l~~lg~~g~~ 393 (497)
T 2qma_A 363 NLV-----DKS--I-ATTKRFDAL-KV----------------------------------------FMTMQNVGPKALG 393 (497)
T ss_dssp ---------------CCSCCCTHH-HH----------------------------------------HHHHHHTCHHHHH
T ss_pred Ccc-----ccC--C-CCCCchhHH-HH----------------------------------------HHHHHHhCHHHHH
Confidence 000 000 0 011111111 11 1345544334677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCC--ccCHHHHHHHHhcCCcEEeeCc
Q 007454 436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE--KIEPVLVQKLADRENISLSYGS 513 (603)
Q Consensus 436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~--~v~~~~V~~Lad~~gI~lr~G~ 513 (603)
.+.++...++++|.+.|.+++ .++++++. +.++|.|.+.+.... .+...+..++. +.|+.
T Consensus 394 ~~~~~~~~~a~~l~~~L~~~~--------~~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~l~~~l~-~~G~~----- 455 (497)
T 2qma_A 394 DMYDHLLAQTLEVADMIRTND--------QFELLAEP----SLSTVLFRATHETADLDELNKALRLEAL-TRGIA----- 455 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTCT--------TEEECSCC----SSSEEEEEECCSSSCHHHHHHHHHHHHH-HHTSC-----
T ss_pred HHHHHHHHHHHHHHHHHhhCC--------CeEEEcCC----CceEEEEEEcCCccCHHHHHHHHHHHHH-hCCCE-----
Confidence 888899999999999999753 27887753 568999998753211 01111222222 23433
Q ss_pred ccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454 514 LHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 514 ~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~ 583 (603)
|..+. ...+.+++|+|+ ++++|.+||+++++.|++++++
T Consensus 456 -~~~~~------------------------------~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 456 -VLGET------------------------------IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp -BCEEE------------------------------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -EEEee------------------------------EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 32110 001125899998 9999999999999999988753
No 40
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=9.4e-21 Score=199.01 Aligned_cols=314 Identities=14% Similarity=-0.032 Sum_probs=216.7
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN 188 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~ 188 (603)
..||.++.+ +.++.+++++.+.+... ..++.. + ....+.++++|+.+++++|++++
T Consensus 32 ~~~~~~~~~-~~~~~v~~a~~~~~~~~-------------------~~~~~~---~-~~~~~~~~~l~~~la~~~~~~~~ 87 (397)
T 3f9t_A 32 GNIFGSMCS-NVLPITRKIVDIFLETN-------------------LGDPGL---F-KGTKLLEEKAVALLGSLLNNKDA 87 (397)
T ss_dssp TCBCSCSCC-CCCTHHHHHHHHHTTCC-------------------TTSGGG---B-HHHHHHHHHHHHHHHHHTTCTTC
T ss_pred CCeEEEecC-CCcHHHHHHHHHHHhhc-------------------CCCccc---C-hhHHHHHHHHHHHHHHHhCCCCC
Confidence 478998855 45667888877654321 122221 1 12457888999999999999998
Q ss_pred cEEEeccC-chHHH----------------------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHH
Q 007454 189 DYVYDYES-EAVEA----------------------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKM 233 (603)
Q Consensus 189 e~vf~~es-~sV~~----------------------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~ 233 (603)
+++++... +++.. +...++..|++++.++++ +++.++.++|++.
T Consensus 88 ~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~ 166 (397)
T 3f9t_A 88 YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK-EDYTIDEKFVKDA 166 (397)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC-TTSSBCHHHHHHH
T ss_pred CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC-CCCcCCHHHHHHH
Confidence 88776432 12221 222334457788888887 4788999999999
Q ss_pred HhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---C---------CCCCCCCCCCCcEE
Q 007454 234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---D---------MDSFGLSLVRPDFL 300 (603)
Q Consensus 234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~---------m~~ldls~~~~Dfl 300 (603)
|... +++++++...+|.||.+.|++.+ ++|+++|+++++|.++.++. . ..++++.. ++|++
T Consensus 167 i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 240 (397)
T 3f9t_A 167 VEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSI 240 (397)
T ss_dssp HHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEE
T ss_pred Hhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeE
Confidence 9741 57889999999999999999966 58999999999999986432 0 01566666 89999
Q ss_pred EEcccccCCCCCCceEEEEEeCCCC-cCcC--CCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 301 ICSFYQIFGENPSGFGCLFVKKSTV-PILV--DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 301 v~S~hK~fG~~P~G~G~L~vkk~~~-~~L~--p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
++|+||+++. |.++|++++++..+ +.+. .++..+.. + . ...||.+..
T Consensus 241 ~~s~~K~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~--------------------~--~~~~~~~~~ 290 (397)
T 3f9t_A 241 TIDPHKMGHC-PIPSGGILFKDIGYKRYLDVDAPYLTETR-------Q--------------------A--TILGTRVGF 290 (397)
T ss_dssp ECCTTTTTCC-CSSCEEEEESSGGGGGGTCEECTTSSSSE-------E--------------------C--SSCSSCCSH
T ss_pred EEccccccCC-CCCceEEEEeCHHHHHhhccCCccccCCC-------c--------------------c--ccccccccc
Confidence 9999999864 78999999987643 2221 11111100 0 0 123555544
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH 457 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h 457 (603)
.++++. ++++.+...+++.+.++.+.++++|.+.|.++.
T Consensus 291 ~~~~~~----------------------------------------a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 329 (397)
T 3f9t_A 291 GGACTY----------------------------------------AVLRYLGREGQRKIVNECMENTLYLYKKLKENN- 329 (397)
T ss_dssp HHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHH----------------------------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 444433 456655556788888999999999999999862
Q ss_pred CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454 458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE 537 (603)
Q Consensus 458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~ 537 (603)
+.++++ ..++++.|.+.+ ...+.+.+.++||.++.|..
T Consensus 330 --------~~~~~~----~~~~~~~~~~~~-------~~~~~~~l~~~gi~v~~~~~----------------------- 367 (397)
T 3f9t_A 330 --------FKPVIE----PILNIVAIEDED-------YKEVCKKLRDRGIYVSVCNC----------------------- 367 (397)
T ss_dssp --------CCBSSC----CSSSEEEEECTT-------HHHHHHHHHHTTCBCEECSS-----------------------
T ss_pred --------CEEEcC----CCccEEEEEeCC-------HHHHHHHHHhCCeEEeccCC-----------------------
Confidence 233333 357888888764 23344444556998875511
Q ss_pred cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+.||+|++.++|.|||+++++.|++++.
T Consensus 368 ----------------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 368 ----------------VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp ----------------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred ----------------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 15899999999999999999999998764
No 41
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.89 E-value=3.7e-22 Score=212.79 Aligned_cols=321 Identities=11% Similarity=0.031 Sum_probs=217.3
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
.+.+|++++|.+++|+.+++++.++... .....+ ++....+.++++|+.+++++|++
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~----------------------~~~~~~-~~~~~~~~~~~~~~~la~~~g~~ 94 (398)
T 2fyf_A 38 KPRDGRFGSGPSKVRLEQLQTLTTTAAA----------------------LFGTSH-RQAPVKNLVGRVRSGLAELFSLP 94 (398)
T ss_dssp SCSSCBCCSSSCCCCHHHHHGGGTTTTT----------------------TTTSCT-TSHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCccccCCCCCCCHHHHHHHhhcCCC----------------------ccCcCc-CCHHHHHHHHHHHHHHHHHhCCC
Confidence 4568999999999999999997652100 000001 11223567889999999999997
Q ss_pred C-CcEEE-eccC-chHHHHHH---------------------HHHHc--CCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454 187 E-NDYVY-DYES-EAVEAMIR---------------------TSEKR--GARVMSAEFSWPRLRINSEKLRKMVVSKGKK 240 (603)
Q Consensus 187 ~-~e~vf-~~es-~sV~~~~~---------------------~a~~~--Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~ 240 (603)
+ ++++| +... +++..++. .+... |+++..+++++ +.+... .+
T Consensus 95 ~~~~i~~~t~g~t~al~~~~~~l~~~gv~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--g~~~~~----~i------ 162 (398)
T 2fyf_A 95 DGYEVILGNGGATAFWDAAAFGLIDKRSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP--GSAPEP----QT------ 162 (398)
T ss_dssp TTCEEEEEETCHHHHHHHHHHHTCSSCEEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT--TCCCCC----CC------
T ss_pred CCceEEEeCCchhHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC--CCCCCc----cc------
Confidence 4 68888 5432 12222111 23334 66666666652 222111 01
Q ss_pred CCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454 241 KKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV 320 (603)
Q Consensus 241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v 320 (603)
+++|++|++++.+|.||.++|++.+... +|++|++|+++..+. .++++. ++|++++|+||+||. |.|+|++++
T Consensus 163 ~~~~~~v~~~~~~nptG~~~~~~~i~~~--~~~~vivD~a~~~~~--~~~~~~--~~di~~~s~sK~~~~-~gg~g~l~~ 235 (398)
T 2fyf_A 163 DPSVDVIAWAHNETSTGVAVAVRRPEGS--DDALVVIDATSGAGG--LPVDIA--ETDAYYFAPQKNFAS-DGGLWLAIM 235 (398)
T ss_dssp CTTCSEEEEESEETTTTEECCCCCCTTC--C-CEEEEECTTTTTT--SCCCGG--GCSEEEECTTSTTCS-CSSEEEEEE
T ss_pred cCCCCEEEEeCcCCCcceecchHHhhhh--cCCeEEEEeccccCC--cccCcc--cCcEEEEecCcccCC-CCceEEEEE
Confidence 2468999999999999999999866433 899999999999887 577775 489999999999994 447999999
Q ss_pred eCCCCcCcC---------CCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcc
Q 007454 321 KKSTVPILV---------DNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL 390 (603)
Q Consensus 321 kk~~~~~L~---------p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~ 390 (603)
+++.++.++ +++.. |... ..+ . .. ...+|+|+.+++++.
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~----------~------~~--~~~~t~~~~~~~a~~------- 284 (398)
T 2fyf_A 236 SPAALSRIEAIAATGRWVPDFLSLPIAV------ENS----------L------KN--QTYNTPAIATLALLA------- 284 (398)
T ss_dssp CHHHHHHHHHHHHTTCCCCGGGCHHHHH------HHH----------T------TT--CCSSCCCHHHHHHHH-------
T ss_pred CHHHHHHhhcccccCCCCCcEEehHHHh------hhc----------c------cC--CCCCCCCHHHHHHHH-------
Confidence 988765552 12222 1100 000 0 00 235788888877765
Q ss_pred ccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe
Q 007454 391 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 469 (603)
Q Consensus 391 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG-l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy 469 (603)
++++.+.+.| ++.+.++.+.++++|.+.|.+++ .++++
T Consensus 285 ---------------------------------~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~--------g~~~~ 323 (398)
T 2fyf_A 285 ---------------------------------EQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERP--------YTTPF 323 (398)
T ss_dssp ---------------------------------HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHST--------TEEES
T ss_pred ---------------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcC--------Cceec
Confidence 5888777667 99999999999999999999863 27787
Q ss_pred CCCCCCCCCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccccc
Q 007454 470 GPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD 548 (603)
Q Consensus 470 gp~~~~~rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 548 (603)
.+.. ..+++ ++.|.+++ + ++...+.+.+.++||.++.|..
T Consensus 324 ~~~~-~~~~~~~~~~~~~~--~--~~~~~l~~~L~~~gI~v~~g~~---------------------------------- 364 (398)
T 2fyf_A 324 VTDP-GLRSQVVGTIDFVD--D--VDAGTVAKILRANGIVDTEPYR---------------------------------- 364 (398)
T ss_dssp CCSG-GGBCSSEEEEEECT--T--SCHHHHHHHHHHTTCBCCSCCT----------------------------------
T ss_pred cCCh-hhcCCcEEEEECCC--C--CCHHHHHHHHHHCCcEEecCcc----------------------------------
Confidence 5211 12456 99999963 1 3344444444556999886510
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 549 KANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 549 ~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
..+.+.||+|++.++|.|||+++++.|++++.
T Consensus 365 --~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 365 --KLGRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp --TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred --cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 01125899999999999999999999998875
No 42
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.89 E-value=2e-22 Score=221.88 Aligned_cols=337 Identities=15% Similarity=0.085 Sum_probs=222.5
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccc-hHHHHHHHHHHHHHHHcCCCC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGG-QESGLESAMKKRIMDFLNISE 187 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~-~~~~~~~~aR~~Ia~~lna~~ 187 (603)
.+.| .++.++.|+.+++++.+.+.+. |..++|.+.+..|. ...++++.+|+++++++|+++
T Consensus 46 ~i~L-~a~e~~~~~~V~eA~~~~l~~~-----------------~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~ 107 (483)
T 1rv3_A 46 GLEL-IASENFASRAVLEALGSCLNNK-----------------YSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDP 107 (483)
T ss_dssp SEEC-CTTCCCCCHHHHHHHTSGGGTC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CeEE-EcCCCCCCHHHHHHHHHHHhcc-----------------CcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCc
Confidence 4555 4677889999999987755321 11256665443332 346788899999999999987
Q ss_pred Cc----EEEeccCchHHHHHHHHHHcCCEEEE-----------------------------Eec--cCCccccCHHHHHH
Q 007454 188 ND----YVYDYESEAVEAMIRTSEKRGARVMS-----------------------------AEF--SWPRLRINSEKLRK 232 (603)
Q Consensus 188 ~e----~vf~~es~sV~~~~~~a~~~Ga~V~~-----------------------------~~~--~~~~g~i~~~~L~~ 232 (603)
++ +++...+.+...+....-+.|.+|.. +++ +..++.+|.++|++
T Consensus 108 ~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~ 187 (483)
T 1rv3_A 108 QCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEE 187 (483)
T ss_dssp TTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHH
T ss_pred ccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHH
Confidence 65 44443332222222333334444433 222 32357799999999
Q ss_pred HHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCC---CCcEEEEcccccC
Q 007454 233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLV---RPDFLICSFYQIF 308 (603)
Q Consensus 233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~---~~Dflv~S~hK~f 308 (603)
++.. .+|+|+++ +.+|.+ .++|++.| ++|+++|+++++|+++..|. ...++... ++|++++|+||+|
T Consensus 188 ~i~~-----~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~--~~~~~~~~p~~~~div~~s~~K~l 258 (483)
T 1rv3_A 188 NARL-----FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGL--VVAGVVPSPFEHCHVVTTTTHKTL 258 (483)
T ss_dssp HHHH-----HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHH--HHHTSSCCGGGTCSEEEEESSGGG
T ss_pred HHhh-----cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcc--cccCCCCCCCCCCcEEEecCcccC
Confidence 9973 15889999 889988 99999966 58999999999999988654 33444434 7899999999987
Q ss_pred CCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcC
Q 007454 309 GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG 388 (603)
Q Consensus 309 G~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~ 388 (603)
++ |.| |+++++++... ++ ..||..... ......... . .+ ...||++...+++++
T Consensus 259 ~G-prg-G~i~~~~~~~~-~~--~~~g~~~~y-~~~~~~~~~------~-----~~----~~~g~~~~~~iaal~----- 312 (483)
T 1rv3_A 259 RG-CRA-GMIFYRRGVRS-VD--PKTGKEILY-NLESLINSA------V-----FP----GLQGGPHNHAIAGVA----- 312 (483)
T ss_dssp CC-CSC-EEEEEECSBCC----------CCBC-CHHHHHHHH------H-----TT----TTCCSCCHHHHHHHH-----
T ss_pred CC-CCc-eEEEEcchhhh-hc--cccCcchhh-HHHHHhhhh------c-----CC----cccCCccHHHHHHHH-----
Confidence 55 889 99999988653 43 223321100 000000000 0 01 137889988887776
Q ss_pred ccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 007454 389 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI 468 (603)
Q Consensus 389 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~I 468 (603)
.|++.+...+++.+.++.+.++++|.+.|.++ | +++
T Consensus 313 -----------------------------------~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~ 348 (483)
T 1rv3_A 313 -----------------------------------VALKQAMTPEFKEYQRQVVANCRALSAALVEL------G---YKI 348 (483)
T ss_dssp -----------------------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEE
T ss_pred -----------------------------------HHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc------C---CEe
Confidence 57776654567888999999999999999875 2 566
Q ss_pred eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEe----eCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454 469 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS----YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 544 (603)
Q Consensus 469 ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr----~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 544 (603)
+++.. ....+.+.+... | ++...+.+++++.||.++ .|..|.
T Consensus 349 ~~~~~---~~~~~~v~~~~~-g--~~~~~~~~~L~~~gI~v~~~~~pg~~~~---------------------------- 394 (483)
T 1rv3_A 349 VTGGS---DNHLILVDLRSK-G--TDGGRAEKVLEACSIACNKNTCPGDKSA---------------------------- 394 (483)
T ss_dssp GGGSC---SSSEEEEEGGGG-T--CCHHHHHHHHHHTTEECEEECCSSCSCT----------------------------
T ss_pred ccCCC---CCceEEEeccCC-C--CCHHHHHHHHHhCCcEEecCCCCCCCcC----------------------------
Confidence 65531 123344444321 1 344557777788999998 454331
Q ss_pred ccccCCCCCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhh
Q 007454 545 NRKDKANLGITVVTASLGYLAN----FEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 545 ~~~~~~~~~~g~VR~Slg~~tt----~eDVd~l~~~l~~~l~~ 583 (603)
.+.+.||+|++.+|| .+|+++++++|+++++.
T Consensus 395 -------~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 395 -------LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp -------TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 112689999999999 99999999999999875
No 43
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.89 E-value=8e-22 Score=213.60 Aligned_cols=291 Identities=15% Similarity=0.085 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEe--------------------------ccCchHH-HHHHHHHHcCCEEEEEeccC
Q 007454 168 ESGLESAMKKRIMDFLNISENDYVYD--------------------------YESEAVE-AMIRTSEKRGARVMSAEFSW 220 (603)
Q Consensus 168 ~~~~~~~aR~~Ia~~lna~~~e~vf~--------------------------~es~sV~-~~~~~a~~~Ga~V~~~~~~~ 220 (603)
..+.++++|+.+++++|++++++++. .+|.+.. .+...++..|++++.++.+
T Consensus 106 ~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~- 184 (438)
T 1wyu_A 106 VLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE- 184 (438)
T ss_dssp HHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB-
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc-
Confidence 45788999999999999987765432 2233332 2334456689999988863
Q ss_pred CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecc-ccCCCCCCCCCCCCCCCc
Q 007454 221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDAC-ALGPKDMDSFGLSLVRPD 298 (603)
Q Consensus 221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAa-q~~~~~m~~ldls~~~~D 298 (603)
++.++.++ |. ++|++|++.+. |.||.+.|++.| ++|+++|++|++|+. +..+. ...+ ..+++|
T Consensus 185 -~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~--~~~~-~~~g~D 249 (438)
T 1wyu_A 185 -GGRTPLPE----VG------EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV--LKPP-GAYGAD 249 (438)
T ss_dssp -TTBCCCCC----CC------TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT--BCCH-HHHTCS
T ss_pred -CCccCHHH----hC------CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccC--cCCC-ccCCCC
Confidence 45666544 33 36999999997 999999999865 589999999997764 43443 2333 457899
Q ss_pred EEEEcccc-----cCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454 299 FLICSFYQ-----IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 373 (603)
Q Consensus 299 flv~S~hK-----~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT 373 (603)
++++|+|| |+|+ | |+|+|+++++..+.+.+...|+++... .... +.. .+... ..+.+ ++.||
T Consensus 250 ~~~~s~kk~~~~~~~~G-p-~~G~l~~~~~~~~~l~~~~~g~~~~~~-~~~~-~~~------~l~~~-~~~~r--~~~~t 316 (438)
T 1wyu_A 250 IAVGDGQSLGLPMGFGG-P-HFGFLATKKAFVRQLPGRLVSETVDVE-GRRG-FIL------TLQAR-EQYIR--RAKAK 316 (438)
T ss_dssp EEEEECTTTTCCCGGGC-S-CCEEEEECGGGGGGCCSCCEEEEEBTT-SCEE-EEE------CCGGG-SHHHH--GGGSS
T ss_pred EEEECCcccCCCccCCC-C-CeeEEEEcHHHHHhCCCceeccccccC-CCcc-eee------ecccc-ccccc--hhccc
Confidence 99999888 5655 7 999999999887766544434332210 0000 100 00000 00112 46789
Q ss_pred CChh---hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHH--HHHHHhcCHHHHHHHHHHHHHHH
Q 007454 374 NTFS---GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRG--LDQVDSLGLTMISRRGRCLINWL 448 (603)
Q Consensus 374 ~n~~---gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--ld~~~~iGl~~i~~r~~~L~~~L 448 (603)
.|+. .++++. ++ +..+...|++++.++.+.++++|
T Consensus 317 ~~~~~~~~~~a~~----------------------------------------aa~~l~~~~~~g~~~~~~~~~~~~~~l 356 (438)
T 1wyu_A 317 SNITTNAQLTALM----------------------------------------GAMYLAALGPEGLREVALKSVEMAHKL 356 (438)
T ss_dssp CCCCSCCHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHH----------------------------------------HHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9883 333332 23 55555567899999999999999
Q ss_pred HHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEE--eeCcccCccCCchhhhh
Q 007454 449 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL--SYGSLHHIWFSDKYQKE 526 (603)
Q Consensus 449 ~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~l--r~G~~C~~~~~~~~~~~ 526 (603)
.++|.+++ .++++++. ..-.++.|.+. .+...+.+.+.++||.+ +.|.+|
T Consensus 357 ~~~L~~~~--------g~~~~~~~---~~~~~~~~~~~------~~~~~~~~~L~~~gi~v~~~~~~~~----------- 408 (438)
T 1wyu_A 357 HALLLEVP--------GVRPFTPK---PFFNEFALALP------KDPEAVRRALAERGFHGATPVPREY----------- 408 (438)
T ss_dssp HHHHTTST--------TCEECSCS---SBCSEEEEECS------SCHHHHHHHHHHTTCCCCEECCTTS-----------
T ss_pred HHHHhcCC--------CeEECCCC---CeEEEEEEeCC------CCHHHHHHHHHHCCceecccccccc-----------
Confidence 99998763 26777753 23445666542 23344444444579988 445333
Q ss_pred hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
+.+.||+|++.++|.+||+++++.|++++
T Consensus 409 --------------------------~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 409 --------------------------GENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp --------------------------CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred --------------------------CCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 12589999999999999999999998764
No 44
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.88 E-value=1.2e-20 Score=208.31 Aligned_cols=341 Identities=11% Similarity=0.037 Sum_probs=209.2
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHHHHHHHHHHHHHHHcCCC
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
...||+|..+++.+..++..+.... .|++.. +..+....++++++++.+++++|++
T Consensus 92 ~p~~~~~~~~~~~~~~~~~~~l~~~-----------------------~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~ 148 (504)
T 2okj_A 92 HPRFFNQLSTGLDIIGLAGEWLTST-----------------------ANTNMFTYEIAPVFVLMEQITLKKMREIVGWS 148 (504)
T ss_dssp CTTEESSSSCCCCHHHHHHHHHHHH-----------------------HCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEccCCCCHHHHHHHHHHHh-----------------------hccCCCchhhChHHHHHHHHHHHHHHHHhCCC
Confidence 4579999988887766654432210 111111 1112234567788889999999998
Q ss_pred --CCcEEEeccC-chHHHHHH-----------------------------------HHHHcCC---EEEEEeccCCcccc
Q 007454 187 --ENDYVYDYES-EAVEAMIR-----------------------------------TSEKRGA---RVMSAEFSWPRLRI 225 (603)
Q Consensus 187 --~~e~vf~~es-~sV~~~~~-----------------------------------~a~~~Ga---~V~~~~~~~~~g~i 225 (603)
+++++|+... +++...+. .++..|. +|+.++.+ +++++
T Consensus 149 ~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~-~~~~~ 227 (504)
T 2okj_A 149 SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN-ERGKI 227 (504)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-TTSCB
T ss_pred CCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC-CCCCC
Confidence 6778776431 22221111 1222233 67777776 47889
Q ss_pred CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCC---CCCCCCC-CCCcEE
Q 007454 226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDM---DSFGLSL-VRPDFL 300 (603)
Q Consensus 226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m---~~ldls~-~~~Dfl 300 (603)
+.++|++.|...+....++.+|++++.+|.||.+.|++.| ++|+++|+++|+|+++.++.-. ....+.. .++|++
T Consensus 228 d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i 307 (504)
T 2okj_A 228 IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSV 307 (504)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEE
T ss_pred CHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEE
Confidence 9999999997522222358999999999999999999966 5899999999999998877510 0023442 379999
Q ss_pred EEcccccCCCCCCceEEEEEeCC-CCcC---cCCCCC-CCcee--ccccccccccccccCCCCCCcccCcccccccccCC
Q 007454 301 ICSFYQIFGENPSGFGCLFVKKS-TVPI---LVDNTS-SGMVS--LLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 373 (603)
Q Consensus 301 v~S~hK~fG~~P~G~G~L~vkk~-~~~~---L~p~~~-gG~v~--~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT 373 (603)
++++|||||. |.|+|+|++|+. .+.. ..+.+. ++... ...... .| .++. .+ +.++
T Consensus 308 ~~~~hK~~~~-p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~--------~~~~----~r----r~~~ 369 (504)
T 2okj_A 308 TWNPHKMMGV-LLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG-DK--------AIQC----GR----HVDI 369 (504)
T ss_dssp EECTTSTTCC-CSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCG-GG--------SSCS----SC----BCCH
T ss_pred EECchhhcCC-CcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcc-cC--------CCCC----CC----CccH
Confidence 9999999987 889999999985 4321 223333 32210 000000 00 0110 01 1122
Q ss_pred CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454 374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 453 (603)
Q Consensus 374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~ 453 (603)
.+.+ .++..+...|+..+.++...++++|.+.|.
T Consensus 370 l~~~----------------------------------------------a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 403 (504)
T 2okj_A 370 FKFW----------------------------------------------LMWKAKGTVGFENQINKCLELAEYLYAKIK 403 (504)
T ss_dssp HHHH----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH----------------------------------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 233333344788888999999999999998
Q ss_pred cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC--C----C-------ccCHHHHHHHHhcCC-cEEeeCcccCccC
Q 007454 454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--R----E-------KIEPVLVQKLADREN-ISLSYGSLHHIWF 519 (603)
Q Consensus 454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--g----~-------~v~~~~V~~Lad~~g-I~lr~G~~C~~~~ 519 (603)
+++ .++++++. ....++|+|.+.+.. + . .....+.++|.+ +| |.++.+.
T Consensus 404 ~~~--------~~~~~~~~--~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~G~~~~~~~~------ 466 (504)
T 2okj_A 404 NRE--------EFEMVFNG--EPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQP------ 466 (504)
T ss_dssp TCT--------TEEESSSS--CCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHH-HTSCEEEEEE------
T ss_pred cCC--------CEEEEecC--CCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHh-CCcEEEEeeE------
Confidence 753 38888742 135788999874321 0 0 001223333433 33 2322110
Q ss_pred CchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhh
Q 007454 520 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 520 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~ 583 (603)
. .+ ..+++|+|++ ++||.+||+++++.|++++++
T Consensus 467 -----------------------~------~~-~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 467 -----------------------Q------GD-KANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp -----------------------E------TT-EEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred -----------------------E------CC-ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 01 1258999997 999999999999999988754
No 45
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.87 E-value=2.6e-20 Score=200.32 Aligned_cols=303 Identities=9% Similarity=0.031 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEec-------------------------cCchHHH-HHHHHHHcCCEEEEEeccCCc
Q 007454 169 SGLESAMKKRIMDFLNISENDYVYDY-------------------------ESEAVEA-MIRTSEKRGARVMSAEFSWPR 222 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~lna~~~e~vf~~-------------------------es~sV~~-~~~~a~~~Ga~V~~~~~~~~~ 222 (603)
....++.|++|++++|++ +++|.. ++.++.. +...++..|+++..++.+
T Consensus 55 ~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 129 (412)
T 2cb1_A 55 DPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--- 129 (412)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS---
T ss_pred ChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC---
Confidence 356789999999999985 555432 1222211 111234467777776642
Q ss_pred cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454 223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI 301 (603)
Q Consensus 223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv 301 (603)
.++|++.|.. ++++|++...+|+||.++|++.| ++|+++|+++++|+++..+. ...+.-..++|+++
T Consensus 130 ----~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~~di~~ 197 (412)
T 2cb1_A 130 ----PEAVREALSA------KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAG--ALCRPLAWGAHVVV 197 (412)
T ss_dssp ----HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTT--TSCCGGGGTCSEEE
T ss_pred ----HHHHHHHhcc------CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccc--ccCCccccCCeEEE
Confidence 7888888853 68999999999999999999966 58999999999999998872 12222246799999
Q ss_pred EcccccCCCCCCc-eEEEEEeCCCC-----cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454 302 CSFYQIFGENPSG-FGCLFVKKSTV-----PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 375 (603)
Q Consensus 302 ~S~hK~fG~~P~G-~G~L~vkk~~~-----~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n 375 (603)
+|+||+||+ |.| +|++++.++.. ..+.++...|+.....-..+.+ ... ++.++.+
T Consensus 198 ~S~~K~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------------~~~--~r~~~~~ 258 (412)
T 2cb1_A 198 ESLTKWASG-HGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCF----------------PER--VRTLGLS 258 (412)
T ss_dssp EETTTTTTC-SSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHH----------------HHH--HHHHHTT
T ss_pred ECCcccccC-CCCcEEEEEEeccccccccccccccccccccchhhccchHHH----------------HHH--HHHHHHH
Confidence 999999976 766 89999887432 1222222222211000000000 000 2233322
Q ss_pred hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454 376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL 455 (603)
Q Consensus 376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L 455 (603)
..|+ ++. ... .++....--.+....++...+.++|.+.|.++
T Consensus 259 ~~g~-~~~------------------------------------~~~-a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~ 300 (412)
T 2cb1_A 259 LCGM-ALS------------------------------------PFN-AYLLFQGLETVALRVARMSETARFLAERLQGH 300 (412)
T ss_dssp TTCC-CCC------------------------------------HHH-HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCC-CCC------------------------------------hHH-hHHHHcCCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 2221 110 000 11111110013334445567889999999875
Q ss_pred CCCCCCCCceEEEeCCCCC------------CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeC---------cc
Q 007454 456 QHPNTEGNALVKIYGPKIR------------FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG---------SL 514 (603)
Q Consensus 456 ~h~~~~g~plv~Iygp~~~------------~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G---------~~ 514 (603)
+ ++ ..+++|... ..++++++|++ + + .+.+.+++++.||.+ +| ++
T Consensus 301 ~-----~v--~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~-----~~~~~~~l~~~~i~~-~~s~g~~~sl~~~ 365 (412)
T 2cb1_A 301 P-----KV--KALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-D-----LERASRFLGAIRLLK-AANLGDARTLLVH 365 (412)
T ss_dssp T-----TC--SEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S-----HHHHHHHHHHCSSEE-CSCCSCSSCEEEC
T ss_pred C-----Ce--eEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C-----HHHHHHHHHhCCeee-ecccCCCcceeec
Confidence 3 22 236666421 14689999999 5 3 456788888999999 88 47
Q ss_pred cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 007454 515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ 579 (603)
Q Consensus 515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~ 579 (603)
|+...+... ....+++++ ...+.||+|+|.+++.+||++|.++|++
T Consensus 366 ~~~~~~~~~---~~~~~~~~g----------------~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 366 PWTTTHSRL---KEEARLQAG----------------VTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTTTTTS---CHHHHHHTT----------------CCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CcccccccC---CHHHHHhcC----------------CCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 766543311 012333332 2247999999999999999999999864
No 46
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.85 E-value=2e-19 Score=197.67 Aligned_cols=265 Identities=11% Similarity=-0.006 Sum_probs=171.7
Q ss_pred HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454 204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL 282 (603)
Q Consensus 204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~ 282 (603)
+.++..|++++.++.++ ++ ++.++|+++|..+++....+.+|++++.++.||.+.|++.| ++|+++|+++|+|+++.
T Consensus 197 ~~~~~~g~~~~~v~~d~-~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~ 274 (475)
T 3k40_A 197 RAGLLGGVKLRSVQSEN-HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYA 274 (475)
T ss_dssp HHHHHHTCEEEEECCBT-TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTG
T ss_pred HHHHHcCCceEEEECCC-CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhH
Confidence 34445689999999984 78 99999999998633222347889999999999999999966 58999999999999987
Q ss_pred CCCCCC-CC--CCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCC--cCc--CCCCCCCceeccccccccccccccCC
Q 007454 283 GPKDMD-SF--GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTV--PIL--VDNTSSGMVSLLPAKKQLWLTDEFSS 354 (603)
Q Consensus 283 ~~~~m~-~l--dls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~--~~L--~p~~~gG~v~~~~~~~~~~~~~~~~~ 354 (603)
++.-.. .. .+.. .++|++++++|||++. |.|.|+|++|+... ..+ .+.+..+... ...+...
T Consensus 275 ~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~-----~~~~~~~---- 344 (475)
T 3k40_A 275 GSAFICPEYRHLMKGIESADSFNFNPHKWMLV-NFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ-----GSAPDYR---- 344 (475)
T ss_dssp GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESSGGGC--------------------------------
T ss_pred HHHHhCHhhHHHhcCcccCCEEEECchhccCC-CCceEEEEEeCHHHHHHHhcCCccccCCCcC-----CCCCCcc----
Confidence 653100 01 0111 2479999999998876 99999999997642 111 1222211000 0000000
Q ss_pred CCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH
Q 007454 355 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 434 (603)
Q Consensus 355 ~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl 434 (603)
+.. ++.|.. + .++++. .+++.+...|+
T Consensus 345 ---------~~~--~~~sr~-~-~~l~l~----------------------------------------~al~~~g~~g~ 371 (475)
T 3k40_A 345 ---------HWQ--IPLGRR-F-RALKLW----------------------------------------FVLRLYGVENL 371 (475)
T ss_dssp ---------------CCCGG-G-THHHHH----------------------------------------HHHHHHHHHHH
T ss_pred ---------ccc--ccCCCc-c-cHHHHH----------------------------------------HHHHHHhHHHH
Confidence 000 122322 2 222222 46666655688
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcc
Q 007454 435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL 514 (603)
Q Consensus 435 ~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~ 514 (603)
+.+.++...+++++.+.|.+++ .+++++|. ..++|+|++.+.+ .....+.++|.++..+.+.
T Consensus 372 ~~~~~~~~~~a~~l~~~L~~~~--------g~~l~~~~----~~~iv~f~~~~~~--~~~~~l~~~L~~~g~~~~~---- 433 (475)
T 3k40_A 372 QAHIRRHCNFAKQFGDLCVADS--------RFELAAEI----NMGLVCFRLKGSN--ERNEALLKRINGRGHIHLV---- 433 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST--------TEEESSCC----BTTEEEEEESSCH--HHHHHHHHHHHHHTSCBCE----
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--------CEEEecCC----ceEEEEEEeCCch--HHHHHHHHHHHhCCcEEEE----
Confidence 8999999999999999999863 28888763 5789999997532 1223445555544333322
Q ss_pred cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhhh
Q 007454 515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
+.. ..+...+|+++. +.+|.+||+++++.|++++++-
T Consensus 434 --~~~-------------------------------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 434 --PAK-------------------------------IKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp --EEE-------------------------------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --eeE-------------------------------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 110 012358999976 6679999999999999987653
No 47
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.84 E-value=4.4e-20 Score=195.84 Aligned_cols=328 Identities=12% Similarity=0.073 Sum_probs=215.1
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCC
Q 007454 109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISE 187 (603)
Q Consensus 109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~ 187 (603)
..++|+++.+++++.+++++.+.+... +..+++.+.+..|.. ..++.+.+|++|++++|+++
T Consensus 24 ~~~~~~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~ 86 (405)
T 2vi8_A 24 AKIELIASENFVSRAVMEAQGSVLTNK-----------------YAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH 86 (405)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred cceeeccCcccCCHHHHHHHHHHhhcc-----------------cccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc
Confidence 458888999999999999987654210 012444443322322 34566679999999999985
Q ss_pred CcEEEeccCchHHHHHHHHHHcC--------------------------CEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454 188 NDYVYDYESEAVEAMIRTSEKRG--------------------------ARVMSAEFSWPRLRINSEKLRKMVVSKGKKK 241 (603)
Q Consensus 188 ~e~vf~~es~sV~~~~~~a~~~G--------------------------a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~ 241 (603)
+.+++...++++..++..+.+.| .++..++++..++.++.++|++.|...
T Consensus 87 ~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~---- 162 (405)
T 2vi8_A 87 ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH---- 162 (405)
T ss_dssp EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH----
T ss_pred eEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhc----
Confidence 55433332333333333222222 244444443124568899999998741
Q ss_pred CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC---CCCcEEEEcccccCCCCCCceEE
Q 007454 242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL---VRPDFLICSFYQIFGENPSGFGC 317 (603)
Q Consensus 242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~---~~~Dflv~S~hK~fG~~P~G~G~ 317 (603)
++++|.+.. +..|...|++.+ ++|+++|+++++|+++..+. ...+... ..+|++++|+||+||+ |.| |+
T Consensus 163 -~~~~v~~~~--~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~~~~di~~~s~sK~~~g-~~g-G~ 235 (405)
T 2vi8_A 163 -RPKLIVAAA--AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGL--VAAGLHPNPVPYAHFVTTTTHKTLRG-PRG-GM 235 (405)
T ss_dssp -CCSEEEECC--SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHH--HHTTSSCCSTTTCSEEEEESSSTTCC-CSC-EE
T ss_pred -CCeEEEEeC--CCCCccCCHHHHHHHHHHcCCEEEEEccccccc--cccCcCCCccccCCEEEEeccccCCC-CCC-eE
Confidence 367777632 346888899865 58999999999999987542 1112211 1689999999999976 788 99
Q ss_pred EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454 318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 397 (603)
Q Consensus 318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~ 397 (603)
+++++++.+.+.+... . +..||++...++++.
T Consensus 236 ~~~~~~~~~~l~~~~~-------------------------------~---~~~~~~~~~~~aa~~-------------- 267 (405)
T 2vi8_A 236 ILCQEQFAKQIDKAIF-------------------------------P---GIQGGPLMHVIAAKA-------------- 267 (405)
T ss_dssp EEECHHHHHHHHHHHT-------------------------------T---TTCSSCCHHHHHHHH--------------
T ss_pred EEEcHHHHHHHHhhhc-------------------------------c---cccCCCCHHHHHHHH--------------
Confidence 9998765443332100 0 234666776665544
Q ss_pred HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454 398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 477 (603)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r 477 (603)
++++.+...+++.+.++.+.+.++|.+.|.++ | +++++|. ..
T Consensus 268 --------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~ 309 (405)
T 2vi8_A 268 --------------------------VAFGEALQDDFKAYAKRVVDNAKRLASALQNE------G---FTLVSGG---TD 309 (405)
T ss_dssp --------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---CS
T ss_pred --------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC------C---CeEecCC---CC
Confidence 47776654578889999999999999999886 2 5666653 24
Q ss_pred CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454 478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV 557 (603)
Q Consensus 478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V 557 (603)
+.++.+.+.+. + ++...+.+.+.++||.++.|..|.... .....+.+
T Consensus 310 ~~~~~~~~~~~-~--~~~~~~~~~l~~~gi~v~~g~~~~~~~------------------------------~~~~~~~i 356 (405)
T 2vi8_A 310 NHLLLVDLRPQ-Q--LTGKTAEKVLDEVGITVNKNTIPYDPE------------------------------SPFVTSGI 356 (405)
T ss_dssp SSEEEEECGGG-T--CCHHHHHHHHHHHTEECEEECCTTCSS------------------------------CTTTCSEE
T ss_pred ceEEEEEccCC-C--CCHHHHHHHHHHcCceeccCcCccccC------------------------------CCCCCCce
Confidence 77888888642 1 234556666677899999887541100 00112579
Q ss_pred EEecCCC----CCHHHHHHHHHHHHHHHhh
Q 007454 558 TASLGYL----ANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 558 R~Slg~~----tt~eDVd~l~~~l~~~l~~ 583 (603)
|+|++.+ .+.+|++++++.|++++..
T Consensus 357 Ris~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 357 RIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 9999984 5699999999999998854
No 48
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.84 E-value=1.9e-20 Score=200.25 Aligned_cols=327 Identities=10% Similarity=0.042 Sum_probs=185.4
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~ 187 (603)
...-.||.+++...+.+.+++.. .+|+.+.+.|+.......++.|++|++++|++
T Consensus 27 ~~~~p~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~- 81 (398)
T 1gc0_A 27 ALVPPVYQTATFTFPTVEYGAAC------------------------FAGEQAGHFYSRISNPTLNLLEARMASLEGGE- 81 (398)
T ss_dssp BSSCCBCCCSCBCCC---------------------------------------------CCHHHHHHHHHHHHHHTCS-
T ss_pred CcCCCccCCCccccCCHHHHHHh------------------------hcCCcCCCcccCCCChHHHHHHHHHHHHhCCC-
Confidence 34678999999888777666431 13344444455445567889999999999986
Q ss_pred CcEEEeccCchHHHHHHH-------------------------HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454 188 NDYVYDYESEAVEAMIRT-------------------------SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 242 (603)
Q Consensus 188 ~e~vf~~es~sV~~~~~~-------------------------a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~ 242 (603)
+.+++...++++..++.. ++..|+++..++.. +.++|++.|..
T Consensus 82 ~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~i~~------ 149 (398)
T 1gc0_A 82 AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA------DLQALEAAMTP------ 149 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT------CHHHHHHHCCT------
T ss_pred cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC------CHHHHHHhcCC------
Confidence 555553322232222222 23456666655432 67888888853
Q ss_pred CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEE
Q 007454 243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLF 319 (603)
Q Consensus 243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~ 319 (603)
++++|.+...+|.||.++|++.| ++|+++|+++++|.++..+. ....+ .+++|+++.|+||+||+ |.+ .|+++
T Consensus 150 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~-~~~~d~~~~S~sK~~~~-~~~~~~G~l~ 225 (398)
T 1gc0_A 150 ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY--LQRPL-ELGADLVVHSATKYLSG-HGDITAGIVV 225 (398)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHH--HCCGG-GGTCSEEEEETTTTTTC-SSSCCCEEEE
T ss_pred CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hhCceEEEECCccccCC-CCCCeEEEEE
Confidence 68999999999999999999966 58999999999999998775 22233 35799999999999986 655 58898
Q ss_pred EeCCCCc-CcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454 320 VKKSTVP-ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV 398 (603)
Q Consensus 320 vkk~~~~-~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~ 398 (603)
++++.+. .+.+.. .. +..++.+....+++.
T Consensus 226 ~~~~~~~~~~~~~~-------------------------------~~---~~~~~~~~~~~~~~~--------------- 256 (398)
T 1gc0_A 226 GSQALVDRIRLQGL-------------------------------KD---MTGAVLSPHDAALLM--------------- 256 (398)
T ss_dssp ECHHHHHHHHHTHH-------------------------------HH---HTCCCCCHHHHHHHH---------------
T ss_pred EChHHHHHHHHHHh-------------------------------hc---cCCCCCCHHHHHHHH---------------
Confidence 8875432 222100 00 013444443332221
Q ss_pred hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC------CCCCCCCceEEEeCCC
Q 007454 399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ------HPNTEGNALVKIYGPK 472 (603)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~------h~~~~g~plv~Iygp~ 472 (603)
++++.+.. -++...+..+.|.+ .|.+++ ++.-...|.++++++.
T Consensus 257 -------------------------~~l~~~~~-~~~~~~~~~~~l~~----~L~~~~~v~~v~~~~l~~~~~~~~~~~~ 306 (398)
T 1gc0_A 257 -------------------------RGIKTLNL-RMDRHCANAQVLAE----FLARQPQVELIHYPGLASFPQYTLARQQ 306 (398)
T ss_dssp -------------------------HHHTTHHH-HHHHHHHHHHHHHH----HHHTCTTEEEEEEC--------------
T ss_pred -------------------------hccchHHH-HHHHHHHHHHHHHH----HHhcCCCeeEEECCCCCCCcCHHHHHhh
Confidence 34432211 13333444444444 444321 1100012345666653
Q ss_pred CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEee---Ccc------cCccCCchhhhhhHHHHHhhhcccccccc
Q 007454 473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSY---GSL------HHIWFSDKYQKEKDNVLEKTDREAKSKSD 543 (603)
Q Consensus 473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~---G~~------C~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 543 (603)
. ...+++++|.+.+. .+.+.+++++.+|.++. |+. |....+... ..+.++.++
T Consensus 307 ~-~~~~~~~~~~l~~~------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~---~~~~~~~~g-------- 368 (398)
T 1gc0_A 307 M-SQPGGMIAFELKGG------IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSY---TPEERAHYG-------- 368 (398)
T ss_dssp ---CCTTEEEEEETTH------HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSS---CHHHHHHTT--------
T ss_pred C-CCCceEEEEEECCC------HHHHHHHHHhCCCceeccCCCCcceeeecccccccccC---CHHHHHhcC--------
Confidence 2 24699999999752 24577788888888765 633 433221110 012222221
Q ss_pred cccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 544 NNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 544 ~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
...+.||+|+|..+|.+||+.|.++|+++
T Consensus 369 --------~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 369 --------ISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp --------CCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred --------CCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 22379999999999999999999999865
No 49
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.84 E-value=6.1e-19 Score=193.46 Aligned_cols=351 Identities=11% Similarity=0.025 Sum_probs=212.9
Q ss_pred HHHHHHhhccCcCC-CCceeeecCCCCCCCHHHHH-HHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHH
Q 007454 93 IDQIRAKEYYQLSL-SNHTCLDYFGIGLFSYNQLH-KQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQES 169 (603)
Q Consensus 93 vd~iR~~efp~L~~-~~~vYLDyaa~tl~~~~v~~-a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~ 169 (603)
++.+++.-.|.... ....||+|..+++.++.++. .+..++ |+... +..+....
T Consensus 57 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------------------n~~~~~~~~~~~~~ 112 (486)
T 1js3_A 57 LQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAI------------------------GCIGFSWAASPACT 112 (486)
T ss_dssp HHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHH------------------------CCCCSSGGGCHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHHHHh------------------------CcCccccccChhHH
Confidence 35555432344321 23468888877766665554 343321 11111 11122356
Q ss_pred HHHHHHHHHHHHHcCCCCC---------cEEEecc-Cch----------------------------------------H
Q 007454 170 GLESAMKKRIMDFLNISEN---------DYVYDYE-SEA----------------------------------------V 199 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~---------e~vf~~e-s~s----------------------------------------V 199 (603)
++++++++.+++++|++++ +.+|+.. +++ .
T Consensus 113 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h 192 (486)
T 1js3_A 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH 192 (486)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCc
Confidence 7888999999999999752 4455421 111 1
Q ss_pred HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEe
Q 007454 200 EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILID 278 (603)
Q Consensus 200 ~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvD 278 (603)
..+...++..|++++.++++ .+++++.++|+++|..+.+......+|++++.+|.||.+.|++.| ++|+++|+++|+|
T Consensus 193 ~s~~~~~~~~G~~v~~v~~d-~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD 271 (486)
T 1js3_A 193 SSVERAGLIGGVKLKAIPSD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (486)
T ss_dssp HHHHHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCceEEeecC-CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEe
Confidence 11223334458888899987 488999999999997532211123599999999999999999966 5899999999999
Q ss_pred ccccCCCCCCCC-CCC-----CCCCcEEEEcccccCCCCCCceEEEEEeCCC--CcCcC--CCCCC-Cceeccccccccc
Q 007454 279 ACALGPKDMDSF-GLS-----LVRPDFLICSFYQIFGENPSGFGCLFVKKST--VPILV--DNTSS-GMVSLLPAKKQLW 347 (603)
Q Consensus 279 Aaq~~~~~m~~l-dls-----~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~--~~~L~--p~~~g-G~v~~~~~~~~~~ 347 (603)
+++.++. ... ++. ..++|++++++|||++. |.|+|+|++|+.. .+.+. +.+.. +.... ....
T Consensus 272 ~a~g~~~--~~~~~~~~~~~g~~~adsi~~~~hK~~~~-p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~----~~~~ 344 (486)
T 1js3_A 272 AAYAGSA--FICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS----GLIT 344 (486)
T ss_dssp CTTGGGG--GGSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCHHHHHGGGC------------C----CSCC
T ss_pred hhhHHHH--HHCHHHHHHhcCccccCeeEEchhhhcCC-CcceEEEEEeCHHHHHHHhcCCchhhCCCcccc----cCCC
Confidence 9987654 111 111 13689999999999986 8899999998753 23332 22322 11100 0000
Q ss_pred cccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHH
Q 007454 348 LTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD 427 (603)
Q Consensus 348 ~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald 427 (603)
...+ . . ++.|. .+ +++++. .++.
T Consensus 345 ~~~~-----~-------~---~~~~r-r~-~~~~~~----------------------------------------~al~ 367 (486)
T 1js3_A 345 DYRH-----W-------Q---LPLGR-RF-RSLKMW----------------------------------------FVFR 367 (486)
T ss_dssp CGGG-----S-------S---SCSCC-CC-THHHHH----------------------------------------HHHH
T ss_pred Cccc-----c-------C---CCCCC-ch-hHHHHH----------------------------------------HHHH
Confidence 0000 0 0 11111 11 122221 3555
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCc
Q 007454 428 QVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENI 507 (603)
Q Consensus 428 ~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI 507 (603)
.+..-|+..+.++...+++++.+.|.+++ .++++++. ..++++|.+.+.+ .+...+.++|.+ .|+
T Consensus 368 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~--------~~~~~~~~----~~~~v~f~~~~~~--~~~~~l~~~L~~-~g~ 432 (486)
T 1js3_A 368 MYGVKGLQAYIRKHVQLSHEFEAFVLQDP--------RFEVCAEV----TLGLVCFRLKGSD--GLNEALLERINS-ARK 432 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT--------TEEECSCC----CSSEEEEEESSCH--HHHHHHHHHHHH-HTS
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCC--------CeEEeCCC----ceeEEEEEecChH--HHHHHHHHHHHh-cCC
Confidence 44444788888899999999999998753 28887752 4789999987532 123334455543 354
Q ss_pred EEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454 508 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 508 ~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+..+.. . .+.+.+|+|+ +.++|.+||+++++.|+++++.
T Consensus 433 ~~~~~~~----------------------------~--------~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 433 IHLVPCR----------------------------L--------RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp CBCEEEE----------------------------E--------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE----------------------------E--------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3211100 0 1135899997 7789999999999999998865
No 50
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.83 E-value=2.2e-19 Score=196.00 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=111.0
Q ss_pred ccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCc------------------------hHHHH-HHHHHHcCCEEEEE
Q 007454 162 LLHGGQESGLESAMKKRIMDFLNISENDYVYDYESE------------------------AVEAM-IRTSEKRGARVMSA 216 (603)
Q Consensus 162 ~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~------------------------sV~~~-~~~a~~~Ga~V~~~ 216 (603)
+.|+.......++.|++|++++|++ +.++|...++ ++..+ ...+++.|+++..+
T Consensus 106 ~~y~r~~~~~~~~l~~~lA~l~g~~-~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 106 FEYGRYGNPTTVVLEEKISALEGAE-STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 4455545567889999999999986 5665542222 22211 12345568888777
Q ss_pred eccCCccccCHHHHHHHHhhcCCCCCCe-eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC
Q 007454 217 EFSWPRLRINSEKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL 294 (603)
Q Consensus 217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t-~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~ 294 (603)
+.+ +.++|++.|.. +| +||.+...+|+||.++|++.| ++|+++|+++++|.++..+.. .+.-.
T Consensus 185 ~~~------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~---~~~~~ 249 (445)
T 1qgn_A 185 DPA------DVGALELALNQ------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN---QKALA 249 (445)
T ss_dssp CSS------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT---CCTTT
T ss_pred CCC------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc---CCccc
Confidence 653 68999999975 57 999999999999999999966 589999999999999987762 22234
Q ss_pred CCCcEEEEcccccCCCCCCc---eEEEEEeCCCCc
Q 007454 295 VRPDFLICSFYQIFGENPSG---FGCLFVKKSTVP 326 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~ 326 (603)
+++|+++.|+||+|| |.| .|+++.++++++
T Consensus 250 ~g~Div~~S~sK~~g--g~gd~~~G~l~~~~~l~~ 282 (445)
T 1qgn_A 250 LGADLVLHSATKFLG--GHNDVLAGCISGPLKLVS 282 (445)
T ss_dssp TTCSEEEECTTTTTT--CSSSCCCEEEEECHHHHH
T ss_pred cCCEEEEECCccccc--ccccceEEEEEECHHHHH
Confidence 689999999999999 667 999999876543
No 51
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.83 E-value=1.5e-19 Score=187.79 Aligned_cols=307 Identities=10% Similarity=0.059 Sum_probs=202.2
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
+..||||+++.++.++.+++++.+.+... .. + .| ..+..+++++.+++++|++
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~--------~~--------------~---~g--~~~~~~~~~~~l~~~~g~~ 65 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDNMTQ--------HA--------------G---YG--QDSHCAKAARLIGELLERP 65 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHTTCC--------CC--------------S---TT--CSHHHHHHHHHHHHHHTCT
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHHhhc--------cc--------------c---cc--ccHHHHHHHHHHHHHhCCC
Confidence 45799999999999999999987654211 00 0 01 2357789999999999998
Q ss_pred CCcEEEeccC-chH---------------------HHHHH--HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC-CCC
Q 007454 187 ENDYVYDYES-EAV---------------------EAMIR--TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG-KKK 241 (603)
Q Consensus 187 ~~e~vf~~es-~sV---------------------~~~~~--~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~-~~~ 241 (603)
+++++|+... +++ ..... .++..|+++..++.+ ++.++.++|++.|..+. ...
T Consensus 66 ~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~ 143 (359)
T 1svv_A 66 DADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHM 143 (359)
T ss_dssp TSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTS
T ss_pred CccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHhccC
Confidence 8888775321 111 11111 245678888888875 67889999999997521 112
Q ss_pred CCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccc---cCCCCCCCCCCCC----CCCcEEEEcccccCCC
Q 007454 242 KQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACA---LGPKDMDSFGLSL----VRPDFLICSFYQIFGE 310 (603)
Q Consensus 242 ~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq---~~~~~m~~ldls~----~~~Dflv~S~hK~fG~ 310 (603)
.++++|.+.+. |.||.++| ++.+ ++|+++|+++++|.++ ..+. .+++... ..+|++++|+||++|
T Consensus 144 ~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~d~~~~s~~K~g~- 219 (359)
T 1svv_A 144 VIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSS--PVNDLTLADIARLTDMFYIGATKAGG- 219 (359)
T ss_dssp CEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTS--TTCCCCHHHHHHHCSEEEEECTTTTC-
T ss_pred CCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcC--CCcchhhhhhhhcCCEEEEecccCCC-
Confidence 24899999988 67999999 6544 5789999999999998 4454 3444443 468999999999966
Q ss_pred CCCceEEEEEeCCCCcCcCCCCC-CCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCc
Q 007454 311 NPSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 389 (603)
Q Consensus 311 ~P~G~G~L~vkk~~~~~L~p~~~-gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~ 389 (603)
|.|.|+|+++++.++.+.+... +|.. +.. +....+++.
T Consensus 220 -~~~~g~l~~~~~~~~~~~~~~~~~~~~-------------------------------~~~---~~~~~~~~~------ 258 (359)
T 1svv_A 220 -MFGEALIILNDALKPNARHLIKQRGAL-------------------------------MAK---GWLLGIQFE------ 258 (359)
T ss_dssp -SSCEEEEECSGGGCTTHHHHHHHTTCC-------------------------------CTT---THHHHHHHH------
T ss_pred -CCceEEEEEcccHHHHHHHHHhcCCcc-------------------------------ccc---chhhHHHHH------
Confidence 8899999998877655543110 1100 000 111111111
Q ss_pred cccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe
Q 007454 390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY 469 (603)
Q Consensus 390 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy 469 (603)
..+...+++.+.++.+.++++|.+.| ++. | ++++
T Consensus 259 -------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~-----~---~~~~ 292 (359)
T 1svv_A 259 -------------------------------------VLMKDNLFFELGAHSNKMAAILKAGL-EAC-----G---IRLA 292 (359)
T ss_dssp -------------------------------------HHTSTTHHHHHHHHHHHHHHHHHHHH-HHT-----T---CCBS
T ss_pred -------------------------------------HHHhhhhHHHHHHHHHHHHHHHHHHh-ccC-----C---eEEc
Confidence 11222245677888899999999999 442 2 4555
Q ss_pred CCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccC
Q 007454 470 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK 549 (603)
Q Consensus 470 gp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 549 (603)
+|. .+..+.+.++ .+++++|.+++||.+ .|. .
T Consensus 293 ~~~----~~~~~~~~~~--------~~~~~~l~~~~gi~v-~~~------~----------------------------- 324 (359)
T 1svv_A 293 WPS----ASNQLFPILE--------NTMIAELNNDFDMYT-VEP------L----------------------------- 324 (359)
T ss_dssp SCC----SSSEECBEEE--------HHHHHHHTTTEECEE-EEE------E-----------------------------
T ss_pred cCC----ccceEEEEcC--------HHHHHHHHHhcCEEE-Eec------c-----------------------------
Confidence 553 3556655554 245666666559988 110 0
Q ss_pred CCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 550 ANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 550 ~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
....+.||+|+++.+|.+||+++++.|+++++
T Consensus 325 -~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 325 -KDGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp -TTTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred -cCCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 01125899999999999999999999998864
No 52
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.83 E-value=2.3e-20 Score=198.42 Aligned_cols=341 Identities=11% Similarity=0.082 Sum_probs=212.1
Q ss_pred hCCCCCCchhHHHHHHhhccCcCC-----CCc---eeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccc
Q 007454 83 AYPQYFDTYQIDQIRAKEYYQLSL-----SNH---TCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSY 153 (603)
Q Consensus 83 ~~p~y~~~~~vd~iR~~efp~L~~-----~~~---vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~ 153 (603)
....|..-.+++.+|+ +||.+.. ++. .|+|++..++ .++.+++++.+.+...
T Consensus 16 ~~~~~~~~~~~~~~~~-~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~------------------ 76 (401)
T 2bwn_A 16 DEGRYRTFIDIEREKG-AFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAV------------------ 76 (401)
T ss_dssp HTTCCCCCCEEEECTT-STTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHH------------------
T ss_pred hcCCceehhhhhcccc-cccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHc------------------
Confidence 3334554445667887 6998841 122 3555544342 4667888877643211
Q ss_pred cccccCc-cccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHH-----------------------HHHc
Q 007454 154 KTGNLKT-QLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRT-----------------------SEKR 209 (603)
Q Consensus 154 ~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~-----------------------a~~~ 209 (603)
..|++. ...++ .....++.|++|++++|. +++++|+..+.+...++.. ++..
T Consensus 77 -~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~-~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~ 152 (401)
T 2bwn_A 77 -GAGSGGTRNISG--TTAYHRRLEAEIAGLHQK-EAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN 152 (401)
T ss_dssp -CSCCCSBTTTBC--CBHHHHHHHHHHHHHTTC-SEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS
T ss_pred -CCCCCCcCcccC--ChHHHHHHHHHHHHHhCC-CcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHc
Confidence 112221 11122 235677899999999997 5677775443322222222 1223
Q ss_pred CCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC
Q 007454 210 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD 288 (603)
Q Consensus 210 Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~ 288 (603)
|+++..++.+ +.++|++.|...+ .+++++|++++.+|.||.++|++.| ++|+++|+++++|+++..+. ..
T Consensus 153 g~~~~~v~~~------d~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~-~~ 223 (401)
T 2bwn_A 153 AGPKRIFRHN------DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGM-YG 223 (401)
T ss_dssp CCCEEEECTT------CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT-SS
T ss_pred CCeEEEEcCC------CHHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccc-cC
Confidence 4444444432 6788988886311 1368999999999999999999855 58999999999999988432 00
Q ss_pred C--CCC---CC--CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCccc
Q 007454 289 S--FGL---SL--VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 361 (603)
Q Consensus 289 ~--ldl---s~--~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 361 (603)
+ ..+ .. -++|.++.|+.|.|| ..| |.++.+++..+.+... ..
T Consensus 224 ~~g~~~~~~~~~~~~~~i~~~s~sK~~~--~~G-G~~~~~~~~~~~l~~~------------~~---------------- 272 (401)
T 2bwn_A 224 PRGAGVAERDGLMHRIDIFNGTLAKAYG--VFG-GYIAASARMVDAVRSY------------AP---------------- 272 (401)
T ss_dssp TTSCCHHHHHTCGGGCSEEEEESSSTTC--SCC-EEEEECHHHHHHHHHH------------CH----------------
T ss_pred CCCceeeeccCccccCcEEEeechhhcc--CCC-CEEecCHHHHHHHHHh------------Cc----------------
Confidence 1 111 01 147999999999999 446 8777665443222100 00
Q ss_pred CcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHH
Q 007454 362 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 441 (603)
Q Consensus 362 ~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~ 441 (603)
+.. +..||++ .+++++. ++++++...|++.+.++.
T Consensus 273 --~~~--~~~~~~~-~~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~ 307 (401)
T 2bwn_A 273 --GFI--FSTSLPP-AIAAGAQ----------------------------------------ASIAFLKTAEGQKLRDAQ 307 (401)
T ss_dssp --HHH--TSBCCCH-HHHHHHH----------------------------------------HHHHHHTSHHHHHHHHHH
T ss_pred --Cce--ecCCCCH-HHHHHHH----------------------------------------HHHHHHHhcccHHHHHHH
Confidence 001 3456655 4443332 578877766778999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCC
Q 007454 442 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFS 520 (603)
Q Consensus 442 ~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~ 520 (603)
+.+.++|.+.|.++ | +++++| +++++.|.+++ + ++.. +.++|++++||.++.|... +
T Consensus 308 ~~~~~~l~~~L~~~------g---~~~~~~-----~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~~~~~--~-- 365 (401)
T 2bwn_A 308 QMHAKVLKMRLKAL------G---MPIIDH-----GSHIVPVVIGD--P--VHTKAVSDMLLSDYGVYVQPINFP--T-- 365 (401)
T ss_dssp HHHHHHHHHHHHHH------T---CCBCCC-----SSSCEEEECCC--H--HHHHHHHHHHHHHHCEECCEECTT--T--
T ss_pred HHHHHHHHHHHHHC------C---CcccCC-----CCCeEEEEeCC--h--HHHHHHHHHHHhcCCEEEeecCCC--C--
Confidence 99999999999876 2 344443 35689998864 1 2223 3445556789998755321 0
Q ss_pred chhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 521 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 521 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
...+.+.||+|++.++|.+||+++++.|+++++
T Consensus 366 -----------------------------~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 366 -----------------------------VPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp -----------------------------SCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred -----------------------------CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 001225899999999999999999999998864
No 53
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.83 E-value=1.7e-19 Score=191.58 Aligned_cols=320 Identities=10% Similarity=0.050 Sum_probs=207.6
Q ss_pred CCceeeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (603)
Q Consensus 107 ~~~vYLDyaa~tl~----~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ 182 (603)
++..|+|.++..++ ++.+++++.+.+.. .++..+.+.+.........+.|++|+++
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~l~~~la~~ 102 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDS--------------------HGFGMASVRFICGTQDSHKELEQKLAAF 102 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHH--------------------HCSCCCSCHHHHCCBHHHHHHHHHHHHH
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHHHH--------------------hCCCCCCCCcccCCcHHHHHHHHHHHHH
Confidence 45679999887665 67888887653221 0111111111111135678999999999
Q ss_pred cCCCCCcEEEeccCchHH---------------------HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454 183 LNISENDYVYDYESEAVE---------------------AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK 241 (603)
Q Consensus 183 lna~~~e~vf~~es~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~ 241 (603)
+|++ +.+++...++++. .+...++..|+++..++. ++.++|++.|...+...
T Consensus 103 ~g~~-~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~ 175 (401)
T 1fc4_A 103 LGME-DAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMQELEARLKEAREAG 175 (401)
T ss_dssp HTCS-EEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT------TCHHHHHHHHHHHHHTT
T ss_pred hCCC-cEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC------CCHHHHHHHHHHhhccC
Confidence 9997 5554432222221 122334455666665542 36889999886421111
Q ss_pred CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC--------CCCCCCCCcEEEEcccccCCCCC
Q 007454 242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS--------FGLSLVRPDFLICSFYQIFGENP 312 (603)
Q Consensus 242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~--------ldls~~~~Dflv~S~hK~fG~~P 312 (603)
.++++|.++..+|.||.++|++.+ ++|+++|+++++|.++..+.. .+ +++.. ++|+++.|+||+|++ |
T Consensus 176 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~-~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~-~ 252 (401)
T 1fc4_A 176 ARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV-GENGRGSHEYCDVMG-RVDIITGTLGKALGG-A 252 (401)
T ss_dssp CSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTS-STTSCCHHHHTTCTT-CCSEEEEESSSTTCS-S
T ss_pred CCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccccc-CCCCCccHHHcCCCc-CCcEEEecchhhccC-C
Confidence 157899999999999999999865 589999999999999864330 11 55543 689999999999943 5
Q ss_pred CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454 313 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 392 (603)
Q Consensus 313 ~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~ 392 (603)
.| |++++++++++.+.... . +. .-.++.|....+++.
T Consensus 253 ~g-G~~~~~~~~~~~l~~~~------------~------------------~~---~~~~~~~~~~~~a~~--------- 289 (401)
T 1fc4_A 253 SG-GYTAARKEVVEWLRQRS------------R------------------PY---LFSNSLAPAIVAASI--------- 289 (401)
T ss_dssp SC-EEEEECHHHHHHHHHHC------------H------------------HH---HHSCCCCHHHHHHHH---------
T ss_pred CC-EEEEcCHHHHHHHHHhC------------c------------------Cc---eeCCCCCHHHHHHHH---------
Confidence 57 99999876654333200 0 00 013344555444332
Q ss_pred chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454 393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 472 (603)
Q Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~ 472 (603)
++++.+.. ++.+.++.+.++++|.+.|.++ | ++++ |
T Consensus 290 -------------------------------~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~------g---~~~~-~- 325 (401)
T 1fc4_A 290 -------------------------------KVLEMVEA--GSELRDRLWANARQFREQMSAA------G---FTLA-G- 325 (401)
T ss_dssp -------------------------------HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT------T---CCBC-C-
T ss_pred -------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc------C---Cccc-C-
Confidence 46776654 4778889999999999999876 2 2333 2
Q ss_pred CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454 473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 552 (603)
Q Consensus 473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 552 (603)
..++++.+.+++. .....+.+.+.++||.++.|..|... .
T Consensus 326 ---~~~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~~~~~~~---------------------------------~ 365 (401)
T 1fc4_A 326 ---ADHAIIPVMLGDA----VVAQKFARELQKEGIYVTGFFYPVVP---------------------------------K 365 (401)
T ss_dssp ---SSSSEEEEEEECH----HHHHHHHHHHHHTTEECCEECTTSSC---------------------------------T
T ss_pred ---CCCCEEEEEcCCh----HHHHHHHHHHHHCCcEEeeecCCCCC---------------------------------C
Confidence 3688999988641 12233444444569999987655210 1
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 553 GITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 553 ~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.+|+|++.++|.+|++++++.|++++.+
T Consensus 366 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 366 GQARIRTQMSAAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp TCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1258999999999999999999999998764
No 54
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.83 E-value=1.5e-18 Score=187.08 Aligned_cols=318 Identities=14% Similarity=0.113 Sum_probs=211.4
Q ss_pred CceeeecCCCCC----CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc
Q 007454 108 NHTCLDYFGIGL----FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (603)
Q Consensus 108 ~~vYLDyaa~tl----~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l 183 (603)
+.-|+|.++..+ .++.+++++.+.+... ..+++.+...+|. .....+.|++|++++
T Consensus 63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~~G~--~~~~~~l~~~la~~~ 122 (427)
T 2w8t_A 63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEKF------------------GSGTCGSRMLNGT--FHDHMEVEQALRDFY 122 (427)
T ss_dssp TEEEEECSCCCTTCGGGCHHHHHHHHHHHHHH------------------CSCCCSCTTTTCC--CHHHHHHHHHHHHHH
T ss_pred CceEEEEECcccccCCCCHHHHHHHHHHHHHh------------------CCCCcccccccCC--cHHHHHHHHHHHHHh
Confidence 456788877753 5677888776543210 0012222222222 256678999999999
Q ss_pred CCCCCcEEEeccCchHHHHH---------------------HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454 184 NISENDYVYDYESEAVEAMI---------------------RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 242 (603)
Q Consensus 184 na~~~e~vf~~es~sV~~~~---------------------~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~ 242 (603)
|++ +.+++...++++..++ ..++..|+++..++ .++.++|++.|...+ ..
T Consensus 123 g~~-~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~------~~d~~~le~~l~~~~--~~ 193 (427)
T 2w8t_A 123 GTT-GAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFR------HNSVEDLDKRLGRLP--KE 193 (427)
T ss_dssp TCS-EEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEEC------TTCHHHHHHHHHTSC--SS
T ss_pred CCC-ceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeC------CCCHHHHHHHHHhcc--CC
Confidence 985 4455443222322222 22334466655543 257899999997421 12
Q ss_pred CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC---------CCCCCCCCcEEEEcccccCCCCC
Q 007454 243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS---------FGLSLVRPDFLICSFYQIFGENP 312 (603)
Q Consensus 243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~---------ldls~~~~Dflv~S~hK~fG~~P 312 (603)
++++|++...+|+||.+.|++.+ ++|+++|+++++|.++..+. .. +++. .++|+++.|++|+|| +
T Consensus 194 ~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~--~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g--~ 268 (427)
T 2w8t_A 194 PAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGF--FGPNGRGVYEAQGLE-GQIDFVVGTFSKSVG--T 268 (427)
T ss_dssp SCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SSTTSCCHHHHTTCT-TCCSEEEEESSSTTC--S
T ss_pred CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccc--cCCCCCchHhhcCCC-cCCcEEEecchhhhc--c
Confidence 68999999999999999999865 58999999999999988765 22 5553 378999999999999 6
Q ss_pred CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454 313 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 392 (603)
Q Consensus 313 ~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~ 392 (603)
.| |+++.++++++.+.+. + .. + .-.++.|...++++.
T Consensus 269 ~g-G~v~~~~~l~~~l~~~---~--------~~-~---------------------~~~~~~~~~~~aa~~--------- 305 (427)
T 2w8t_A 269 VG-GFVVSNHPKFEAVRLA---C--------RP-Y---------------------IFTASLPPSVVATAT--------- 305 (427)
T ss_dssp CC-EEEEECCTTGGGGGGT---C--------HH-H---------------------HSSCCCCHHHHHHHH---------
T ss_pred CC-CEEEeCHHHHHHHHHh---c--------cc-c---------------------cccCCCCHHHHHHHH---------
Confidence 67 9999998877655431 0 00 0 013455555444332
Q ss_pred chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454 393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK 472 (603)
Q Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~ 472 (603)
++++.++. ++.+.++.+.+.++|.+.|.++ | +.++++.
T Consensus 306 -------------------------------~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~ 343 (427)
T 2w8t_A 306 -------------------------------TSIRKLMT--AHEKRERLWSNARALHGGLKAM------G---FRLGTET 343 (427)
T ss_dssp -------------------------------HHHHHHTS--CHHHHHHHHHHHHHHHHHHHHH------T---CEESCSS
T ss_pred -------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc------C---CcccCCC
Confidence 46666542 5788889999999999999876 2 4555442
Q ss_pred CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454 473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL 552 (603)
Q Consensus 473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 552 (603)
.+++++.|.+.+. .-...+.++|. ++||.++.|..+.. ..
T Consensus 344 ---~~~~~~~~~~~~~---~~~~~l~~~L~-~~Gi~v~~~~~~~~---------------------------------~~ 383 (427)
T 2w8t_A 344 ---CDSAIVAVMLEDQ---EQAAMMWQALL-DGGLYVNMARPPAT---------------------------------PA 383 (427)
T ss_dssp ---CCSSEEEEEESSH---HHHHHHHHHHH-HTTEECEEECTTTS---------------------------------CT
T ss_pred ---CCCCEEEEEECCH---HHHHHHHHHHH-HCCeEEeeeCCCCC---------------------------------CC
Confidence 2678999998641 01123444554 45999988754321 01
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 553 GITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 553 ~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
+.+.||+|++.++|.+||+++++.|++++.+.
T Consensus 384 ~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 384 GTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 23589999999999999999999999998664
No 55
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.83 E-value=2.5e-20 Score=193.08 Aligned_cols=256 Identities=13% Similarity=0.054 Sum_probs=160.9
Q ss_pred HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh-CCcEEEEeccccC
Q 007454 206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE-NDWHILIDACALG 283 (603)
Q Consensus 206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e-~g~~vlvDAaq~~ 283 (603)
+++.|+++..++. ++.++|++.|. +++++|.+++.+|.||.++|++.+ ++|++ +|+++++|+++..
T Consensus 58 ~~~~g~~~~~~~~------~d~~~l~~~i~------~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~ 125 (331)
T 1pff_A 58 LRKFGVEVDFIDM------AVPGNIEKHLK------PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFAS 125 (331)
T ss_dssp HHHTTCEEEEECT------TSTTHHHHTCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTH
T ss_pred HHhcCCEEEEeCC------CCHHHHHHhhc------CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcc
Confidence 5567888888765 25677887775 368999999999999999999866 58999 9999999999987
Q ss_pred CCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcc
Q 007454 284 PKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 360 (603)
Q Consensus 284 ~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 360 (603)
+. ...++ .+++|++++|+||+||. |.| .|++++++ +..+.+.+...++
T Consensus 126 ~~--~~~~~-~~~~d~~~~s~~K~~~~-~~~r~~G~~~~~~~~~~~~l~~~~~~~------------------------- 176 (331)
T 1pff_A 126 PI--LTNPL-DLGVDIVVHSATKYING-HTDVVAGLVCSRADIIAKVKSQGIKDI------------------------- 176 (331)
T ss_dssp HH--HCCGG-GGTCSEEEEETTTTTSS-SSSCCCEEEEECHHHHHHHHHTCCCCC-------------------------
T ss_pred cc--cCChh-hcCCcEEEEECccccCC-CCCceEEEEEeCcHHHHHHHHHHHHhh-------------------------
Confidence 75 23334 46899999999999986 766 79999987 6655454322110
Q ss_pred cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHH
Q 007454 361 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 440 (603)
Q Consensus 361 ~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r 440 (603)
-.++.+......+. .+++.... -++.....
T Consensus 177 ---------~~~~~~~~~~~~~~----------------------------------------~~l~~~~~-~~~~~~~~ 206 (331)
T 1pff_A 177 ---------TGAIISPHDAWLIT----------------------------------------RGTLTLDM-RVKRAAEN 206 (331)
T ss_dssp ---------CCCCCCHHHHHHHH----------------------------------------HHHHHHHH-HHHHHHHH
T ss_pred ---------cCCCCCHHHHHHHH----------------------------------------cCcchHHH-HHHHHHHH
Confidence 01122222221111 23332211 12334444
Q ss_pred HHHHHHHHHHHHhcCC---CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeC-----
Q 007454 441 GRCLINWLVNALMKLQ---HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG----- 512 (603)
Q Consensus 441 ~~~L~~~L~~~L~~L~---h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G----- 512 (603)
...+.++|.+. ..+. .+.-...|.++++++.. ..++++++|.+. +.+.+.+++++.||.++.+
T Consensus 207 ~~~~~~~l~~~-~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~l~~~gI~~~~~s~g~~ 277 (331)
T 1pff_A 207 AQKVAEFLHEH-KAVKKVYYPGLPDHPGHEIAKKQM-KMFGSMIAFDVD-------GLEKAKKVLDNCHVVSLAVSLGGP 277 (331)
T ss_dssp HHHHHHHHHHC-TTCCCEECTTSTTSTTHHHHHHHC-SSCCSEEEEECS-------SHHHHHHHHHTCSSSEECSSCCSS
T ss_pred HHHHHHHHHcC-CCeeEEECCCCCCCccHHHHHhhC-CCCceEEEEEEC-------CHHHHHHHHHhCCCceeccCCCCc
Confidence 45555554432 1111 00000122344444322 236899999986 2456778888999987655
Q ss_pred ----cccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 513 ----SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 513 ----~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
++|+...+.... ...+... +...+.||+|+|.++|.+||++|+++|+++
T Consensus 278 ~sl~~~~~~~~~~~~~---~~~~~~~----------------g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 278 ESLIQHPASMTHAGVP---KEEREAA----------------GLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SCEEECHHHHTSTTSC---HHHHHHT----------------TCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred ceeeecchhhcccccC---HHHHHhc----------------CCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 477654332110 1112121 122379999999999999999999998764
No 56
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.82 E-value=3e-18 Score=179.43 Aligned_cols=319 Identities=15% Similarity=0.112 Sum_probs=211.2
Q ss_pred CCCCCCchhHHHHHHhhccCcCCCCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc
Q 007454 84 YPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL 162 (603)
Q Consensus 84 ~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~ 162 (603)
.+.|.-...+.++++ +|.. ++.|+|+.+...+ .++.+++++.+.+... ..+|.
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------------------~~y~~--- 66 (363)
T 3ffh_A 13 LSSYKPGKREEEVMA-ELGL---TKITKLSSNENPLGTSKKVAAIQANSSVET-------------------EIYPD--- 66 (363)
T ss_dssp CCC----CHHHHHHH-TTTC---SCCEECSSCSCTTCCCHHHHHHHHTCBSCC-------------------CBC-----
T ss_pred CCCCCCCCCHHHHHH-hcCC---CceEEccCCCCCCCCCHHHHHHHHHHHHHh-------------------hcCCC---
Confidence 344554456677765 3543 4678998875553 6788889887643210 01121
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccC
Q 007454 163 LHGGQESGLESAMKKRIMDFLNISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSW 220 (603)
Q Consensus 163 ~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~ 220 (603)
....+.|++|++++|+++++++++... .+...+...++..|+++..++.++
T Consensus 67 -------~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 139 (363)
T 3ffh_A 67 -------GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ 139 (363)
T ss_dssp ---------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT
T ss_pred -------cchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC
Confidence 123589999999999999999875321 112223445667799999999885
Q ss_pred CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhC--CcEEEEeccccC---CCCCCCCCC-C
Q 007454 221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQEN--DWHILIDACALG---PKDMDSFGL-S 293 (603)
Q Consensus 221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~--g~~vlvDAaq~~---~~~m~~ldl-s 293 (603)
++.++.++|++.+.. ++++|.++..+|.||.++|++.+. +++.. |+++++|.++.. ++....+.. .
T Consensus 140 -~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 212 (363)
T 3ffh_A 140 -DGEHDLEGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVR 212 (363)
T ss_dssp -TSCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGG
T ss_pred -CCCcCHHHHHHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhh
Confidence 788999999999863 699999999999999999998664 66655 999999999872 110011111 1
Q ss_pred CCCCcEEEEcccccCCCCCCce--EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccccc
Q 007454 294 LVRPDFLICSFYQIFGENPSGF--GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 371 (603)
Q Consensus 294 ~~~~Dflv~S~hK~fG~~P~G~--G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~ 371 (603)
...-++++.|++|+|| +.|+ |++++++++.+.+.+.. ..
T Consensus 213 ~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~-------------------------------------~~ 253 (363)
T 3ffh_A 213 TYKNLIITRTFSKIYG--LASARVGYGIADKEIIRQLNIVR-------------------------------------PP 253 (363)
T ss_dssp TCTTEEEEEESSSTTC--CSSCCCEEEEECHHHHHHHHHTC-------------------------------------CS
T ss_pred cCCCEEEEeechhhhc--CchhceeeeecCHHHHHHHHHhC-------------------------------------CC
Confidence 2344588899999999 5577 99999776654333210 11
Q ss_pred CCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454 372 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 451 (603)
Q Consensus 372 GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~ 451 (603)
.+.|..+.+++. ++++.. -.++.+.++.+.++++|.+.
T Consensus 254 ~~~~~~~~~~~~----------------------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~ 291 (363)
T 3ffh_A 254 FNTTSIGQKLAI----------------------------------------EAIKDQ--AFIGECRTSNANGIKQYEAF 291 (363)
T ss_dssp CCCBHHHHHHHH----------------------------------------HHHHCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH----------------------------------------HHhcCH--HHHHHHHHHHHHHHHHHHHH
Confidence 233334333322 344321 13677888899999999999
Q ss_pred HhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454 452 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 531 (603)
Q Consensus 452 L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l 531 (603)
|.++. | ++++.+ .+..+.+.+++ +...+.+.+.++||.++.|..+.
T Consensus 292 l~~~~-----g---~~~~~~-----~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~--------------- 337 (363)
T 3ffh_A 292 AKRFE-----K---VKLYPA-----NGNFVLIDLGI------EAGTIFSYLEKNGYITRSGAALG--------------- 337 (363)
T ss_dssp HHHCT-----T---CEECCC-----CSSEEEEECSS------CHHHHHHHHHHTTEECEETTTTT---------------
T ss_pred HhhCC-----C---ceECCC-----CCeEEEEECCC------CHHHHHHHHHHCCeEEEeCccCC---------------
Confidence 98742 2 555533 46788888764 23344444456799999885431
Q ss_pred HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
. .+.||+|++ |.+|++++++.|++++
T Consensus 338 --------------------~-~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 338 --------------------F-PTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp --------------------C-TTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred --------------------C-CCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 1 269999988 9999999999998764
No 57
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.82 E-value=8.9e-20 Score=194.72 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=125.6
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~ 187 (603)
...|.|+.+++...+.+.+++..+ .|+.+.+.|+.......++.|++|++++|++
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~- 80 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAARF------------------------ALEESGYIYTRLGNPTTDALEKKLAVLERGE- 80 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHHHC-----------------------------CCSBTTTCCHHHHHHHHHHHHHHTCS-
T ss_pred CcCCCCcCCCccccCCHHHHHHhh------------------------cCCCCCCceeCCCChHHHHHHHHHHHHhCCC-
Confidence 467999999999988888876531 1222233333334467789999999999986
Q ss_pred CcEEEeccCc------------------------hHHH-HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454 188 NDYVYDYESE------------------------AVEA-MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 242 (603)
Q Consensus 188 ~e~vf~~es~------------------------sV~~-~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~ 242 (603)
+.+++..-++ ++.. +...++..|.++..++.+ +.++|++.|..
T Consensus 81 ~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~------ 148 (398)
T 2rfv_A 81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA------KPEEIRAAMRP------ 148 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT------SHHHHHHHCCT------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC------CHHHHHHhcCC------
Confidence 4454432222 2211 112235667777777653 67888888853
Q ss_pred CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEE
Q 007454 243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLF 319 (603)
Q Consensus 243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~ 319 (603)
++++|.++..+|.||.++|++.+ ++|+++|+++++|.++..+. ....+ .+++|+++.|+||+||+ |.+ .|+++
T Consensus 149 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~-~~~~di~~~s~sK~~~~-~g~~~~G~~~ 224 (398)
T 2rfv_A 149 ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPY--CQQPL-QLGADIVVHSVTKYING-HGDVIGGIIV 224 (398)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTT--TCCGG-GGTCSEEEEETTTTTTC-SSCCCCEEEE
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hhCCcEEEEeCcccccC-CCCceEEEEE
Confidence 68999999999999999999866 58999999999999988775 22112 35799999999999976 665 59999
Q ss_pred EeCCCC
Q 007454 320 VKKSTV 325 (603)
Q Consensus 320 vkk~~~ 325 (603)
++++.+
T Consensus 225 ~~~~~~ 230 (398)
T 2rfv_A 225 GKQEFI 230 (398)
T ss_dssp ECHHHH
T ss_pred ECHHHH
Confidence 887654
No 58
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.82 E-value=3.7e-19 Score=188.00 Aligned_cols=322 Identities=13% Similarity=0.096 Sum_probs=206.3
Q ss_pred CceeeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc
Q 007454 108 NHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (603)
Q Consensus 108 ~~vYLDyaa~tl~----~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l 183 (603)
+.-|+|.++..++ ++.+++++.+.+... ....+.+...+| .....++.|+.|++++
T Consensus 42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~~g--~~~~~~~l~~~la~~~ 101 (399)
T 3tqx_A 42 EKEVLNFCANNYLGLADHPALIKTAQTVVEQY------------------GFGMASVRFICG--TQTIHKELEKDISEFL 101 (399)
T ss_dssp TEEEEECSSCCTTSCTTCHHHHHHHHHHHHHH------------------CSCCCSCCCCCC--CBHHHHHHHHHHHHHH
T ss_pred CeeEEEeeccCcccccCCHHHHHHHHHHHHHh------------------CCCCCCcCcccc--CchHHHHHHHHHHHHH
Confidence 4568999888653 477777766533211 001111111122 2356789999999999
Q ss_pred CCCCCcEEEeccCchHH---------------------HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454 184 NISENDYVYDYESEAVE---------------------AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 242 (603)
Q Consensus 184 na~~~e~vf~~es~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~ 242 (603)
|.+ +.+++...++++. .+...++..|+++..++. ++.++|++.|...+....
T Consensus 102 ~~~-~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~ 174 (399)
T 3tqx_A 102 GTD-DTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN------NAMGDLEAKLKEADEKGA 174 (399)
T ss_dssp TCS-EEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT------TCTTHHHHHHHHHHTTTC
T ss_pred CCC-cEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC------CCHHHHHHHHHhhhccCC
Confidence 985 4555543222222 223344455666666653 356788888875221112
Q ss_pred CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC----CCCCC--CCCcEEEEcccccCCCCCCce
Q 007454 243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS----FGLSL--VRPDFLICSFYQIFGENPSGF 315 (603)
Q Consensus 243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~----ldls~--~~~Dflv~S~hK~fG~~P~G~ 315 (603)
++++|+++..+|.||.++|++.+ ++|+++|+++++|.++..+..-.. ++... .++|+++.|+||+||+ |.|
T Consensus 175 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g-~~g- 252 (399)
T 3tqx_A 175 RFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGG-ASG- 252 (399)
T ss_dssp SSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCS-SCC-
T ss_pred CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhccc-Cce-
Confidence 68999999999999999999855 589999999999999854420000 11111 2689999999999986 667
Q ss_pred EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454 316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI 395 (603)
Q Consensus 316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i 395 (603)
|+++.+++.++.+... + . .. .-.++.+...++++.
T Consensus 253 G~~~~~~~~~~~~~~~---~---------~-------------------~~--~~~~~~~~~~~~~~~------------ 287 (399)
T 3tqx_A 253 GYTSGHKEIIEWLRNR---S---------R-------------------PY--LFSNTVAPVIVATSL------------ 287 (399)
T ss_dssp EEEEECHHHHHHHHHH---C---------H-------------------HH--HSSCCCCHHHHHHHH------------
T ss_pred EEEEcCHHHHHHHHHh---C---------c-------------------ce--eccCCCcHHHHHHHH------------
Confidence 9998887665433320 0 0 00 114455555544332
Q ss_pred HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC
Q 007454 396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF 475 (603)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~ 475 (603)
.+++... .+++.+.++.+.+.++|.+.|.++ |. +++.
T Consensus 288 ----------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~------g~---~~~~----- 324 (399)
T 3tqx_A 288 ----------------------------KVLELLK-TEGPQLRKQLQENSRYFRAGMEKL------GF---QLVP----- 324 (399)
T ss_dssp ----------------------------HHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH------TC---CBCC-----
T ss_pred ----------------------------HHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc------CC---CcCC-----
Confidence 4666553 367889999999999999999886 22 2222
Q ss_pred CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454 476 DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 555 (603)
Q Consensus 476 ~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 555 (603)
..++++.|.+++.. -...+.++|. ++||.++.+.+... ..+.+
T Consensus 325 ~~~~~~~~~~~~~~---~~~~~~~~l~-~~gi~v~~~~~~~~---------------------------------~~~~~ 367 (399)
T 3tqx_A 325 GNHPIIPVMLGDAQ---LATNMADHLL-QEGIYVVGFSYPVV---------------------------------PMGKA 367 (399)
T ss_dssp CSSSEEEEEEECHH---HHHHHHHHHH-HTTEECCEECTTTS---------------------------------CTTCE
T ss_pred CCCCEEEEEeCCHH---HHHHHHHHHH-HCCCEEeeeCCCCC---------------------------------CCCCc
Confidence 35788888886521 1123344555 47999986532110 11236
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 556 VVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.||+|+++++|.+||+++++.|++++++
T Consensus 368 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 368 RIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998865
No 59
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.82 E-value=1.4e-18 Score=182.19 Aligned_cols=318 Identities=9% Similarity=0.035 Sum_probs=212.5
Q ss_pred hCCCCCCchhHHHHHHhhccCcCCCCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc
Q 007454 83 AYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ 161 (603)
Q Consensus 83 ~~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~ 161 (603)
..++|.......++++. |.. ++.++|+.+... +.++.+++++.+.+... ..++...
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------------------~~y~~~~ 66 (365)
T 3get_A 10 NLSNYEPGKDIEVIAKE-YGV---KEVIKLASNENPFGTPPKAIECLRQNANKA-------------------HLYPDDS 66 (365)
T ss_dssp GSCCCCCCCCHHHHHHH-TTC---SCCEECSSCCCTTCSCHHHHHHHHHHGGGT-------------------TSCCCTT
T ss_pred hcCCCCCCCCHHHHHHh-cCC---CceEEecCCCCCCCCCHHHHHHHHHHHHhh-------------------ccCCCCC
Confidence 34455554567777663 654 467999977555 46788888877643210 0111111
Q ss_pred ccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEec-
Q 007454 162 LLHGGQESGLESAMKKRIMDFLNISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEF- 218 (603)
Q Consensus 162 ~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~- 218 (603)
..+.|++|++++|+++++++++... .+.......++..|+++..+++
T Consensus 67 ----------~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 136 (365)
T 3get_A 67 ----------MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI 136 (365)
T ss_dssp ----------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSS
T ss_pred ----------hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecC
Confidence 1378999999999998999875321 1122234455667999999887
Q ss_pred cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHH--hCCcEEEEecccc------CCCCCCC
Q 007454 219 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQ--ENDWHILIDACAL------GPKDMDS 289 (603)
Q Consensus 219 ~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~--e~g~~vlvDAaq~------~~~~m~~ 289 (603)
+ .++ ++.++|++.+.. ++++|.++..+|.||.++|++.+. +++ ++|+++++|.++. .+. .+
T Consensus 137 ~-~~~-~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~--~~ 206 (365)
T 3get_A 137 T-HNL-DEFKKLYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSK--KH 206 (365)
T ss_dssp S-CCH-HHHHHHHHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGG--GC
T ss_pred C-CCC-CCHHHHHHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCc--cc
Confidence 4 367 899999999863 689999999999999999998554 665 6799999999976 433 12
Q ss_pred CCC----CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccc
Q 007454 290 FGL----SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 365 (603)
Q Consensus 290 ldl----s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 365 (603)
.+. ...+.++++.|++|+||.+..++|+++++++..+.+...
T Consensus 207 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---------------------------------- 252 (365)
T 3get_A 207 LEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKL---------------------------------- 252 (365)
T ss_dssp CCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHH----------------------------------
T ss_pred ccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHh----------------------------------
Confidence 322 224678999999999983223479998866554333210
Q ss_pred ccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH
Q 007454 366 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 445 (603)
Q Consensus 366 ~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~ 445 (603)
....++|..+..++. ++++.. -.++...++.+.++
T Consensus 253 ---~~~~~~~~~~~~~~~----------------------------------------~~l~~~--~~~~~~~~~~~~~~ 287 (365)
T 3get_A 253 ---RAPFNVSNLALKAAV----------------------------------------AAMDDD--EFTEKTLENNFSQM 287 (365)
T ss_dssp ---SCTTCSCHHHHHHHH----------------------------------------HHHTCH--HHHHHHHHHHHHHH
T ss_pred ---cCCCCcCHHHHHHHH----------------------------------------HHhCCH--HHHHHHHHHHHHHH
Confidence 001123444433332 344321 13677788888999
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhh
Q 007454 446 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK 525 (603)
Q Consensus 446 ~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~ 525 (603)
++|.+.|.++ | ++++.+ .+..+.+.+++. +...+.+.+.++||.++.|..|.
T Consensus 288 ~~l~~~l~~~------g---~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~--------- 339 (365)
T 3get_A 288 ELYKEFAKKH------N---IKIIDS-----YTNFITYFFDEK-----NSTDLSEKLLKKGIIIRNLKSYG--------- 339 (365)
T ss_dssp HHHHHHHHHT------T---CEECCC-----SSSEEEEECSSS-----CHHHHHHHHHTTTEECEECGGGT---------
T ss_pred HHHHHHHHhC------C---CEECCC-----CCeEEEEECCCC-----CHHHHHHHHHHCCEEEEECccCC---------
Confidence 9999999876 2 455543 466788887653 23445454556799999885542
Q ss_pred hhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 526 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 526 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
.+.||+|++ |.+|++++++.|++++
T Consensus 340 ----------------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 340 ----------------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ----------------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 258999988 8999999999999876
No 60
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.7e-18 Score=185.62 Aligned_cols=265 Identities=10% Similarity=0.031 Sum_probs=171.1
Q ss_pred HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEecccc
Q 007454 204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACAL 282 (603)
Q Consensus 204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~ 282 (603)
+.++-.|++++.++.+ .+++++.++|+++|..++.....+.+|++++.++.||.+.|++.|. +|+++|+++|||+++.
T Consensus 203 ~~~~~~g~~~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g 281 (481)
T 4e1o_A 203 KAGLISLVKMKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYA 281 (481)
T ss_dssp HHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTG
T ss_pred HHHHhCCCceEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhH
Confidence 3344568899999988 4899999999999975332223478899999999999999999664 8999999999999876
Q ss_pred CCCCCC-CCC--CCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCC--cCc--CCCCCCCceeccccccccccccccCC
Q 007454 283 GPKDMD-SFG--LSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTV--PIL--VDNTSSGMVSLLPAKKQLWLTDEFSS 354 (603)
Q Consensus 283 ~~~~m~-~ld--ls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~--~~L--~p~~~gG~v~~~~~~~~~~~~~~~~~ 354 (603)
++.-+. ... +.. -++|++++++|||++. |.|.|+|++|+... ..+ .+.+..+.. . ...+
T Consensus 282 ~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~----~-~~~~------- 348 (481)
T 4e1o_A 282 GTAFLCPEFRGFLKGIEYADSFTFNPSKWMMV-HFDCTGFWVKDKYKLQQTFSVNPIYLRHAN----S-GVAT------- 348 (481)
T ss_dssp GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESBHHHHHTTTCCCCGGGCCTT----T-TTSC-------
T ss_pred HHHHhChhhHHHhcCcccCCEEEEChHHhcCC-CCceEEEEEeCHHHHHHHhcCCchhccCcc----c-CCCC-------
Confidence 652000 111 111 1469999999999887 89999999997532 111 122221100 0 0000
Q ss_pred CCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH
Q 007454 355 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 434 (603)
Q Consensus 355 ~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl 434 (603)
+.. ... ++.|.. +. ++++. .++..+...|+
T Consensus 349 -~~~-----~~~--~~~~r~-~~-~l~~~----------------------------------------~al~~~g~~g~ 378 (481)
T 4e1o_A 349 -DFM-----HWQ--IPLSRR-FR-SVKLW----------------------------------------FVIRSFGVKNL 378 (481)
T ss_dssp -CGG-----GGS--SSSCCC-CT-HHHHH----------------------------------------HHHHHHHHHHH
T ss_pred -Ccc-----ccc--ccCCCC-cc-HHHHH----------------------------------------HHHHHhHHHHH
Confidence 000 000 122222 21 22221 45555544578
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcc
Q 007454 435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL 514 (603)
Q Consensus 435 ~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~ 514 (603)
+.+.++...+++++.+.|.+++ .+++++|. ..++|.|.+.+.+ .....+.++|.++..+.+..+
T Consensus 379 ~~~~~~~~~~a~~l~~~L~~~~--------g~~~~~~~----~~~~v~f~~~~~~--~~~~~l~~~L~~~g~~~~~~~-- 442 (481)
T 4e1o_A 379 QAHVRHGTEMAKYFESLVRNDP--------SFEIPAKR----HLGLVVFRLKGPN--SLTENVLKEIAKAGRLFLIPA-- 442 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--------TEECCSCC----CSSEEEEEESSCH--HHHHHHHHHHHHHCSSBCEEE--
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--------CeEEecCC----ceeEEEEEeCCch--HHHHHHHHHHHhCCeEEEEee--
Confidence 8888999999999999998763 37887653 5789999997532 123344555554422332210
Q ss_pred cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhh
Q 007454 515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~ 583 (603)
. ..+.+.+|+|+. +.+|.+||+++++.|++++++
T Consensus 443 ----~-------------------------------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 443 ----T-------------------------------IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp ----E-------------------------------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----E-------------------------------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 012258999976 556999999999999998764
No 61
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.81 E-value=1.2e-19 Score=196.31 Aligned_cols=141 Identities=9% Similarity=-0.006 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchHHHHH-HHHHHcCCEEEEEeccCCc
Q 007454 168 ESGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAVEAMI-RTSEKRGARVMSAEFSWPR 222 (603)
Q Consensus 168 ~~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV~~~~-~~a~~~Ga~V~~~~~~~~~ 222 (603)
.....++.|++||+++|++ +.++|.. ++.++..+. ..+++.|+++.+++.+
T Consensus 80 ~~p~~~~le~~lA~l~g~~-~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~--- 155 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEGGA-GCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL--- 155 (415)
T ss_dssp CCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred CCchHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC---
Confidence 3355678999999999985 4455421 122222211 2234567887777643
Q ss_pred cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh--CCcEEEEeccccCCCCCCCCCCCCCCCcE
Q 007454 223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE--NDWHILIDACALGPKDMDSFGLSLVRPDF 299 (603)
Q Consensus 223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~~~~~m~~ldls~~~~Df 299 (603)
+.++|+++|+ ++|+||.+...+|+||.++|++.| ++|++ +|++|++|++|..+....++ .+++|+
T Consensus 156 ---d~~~le~ai~------~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~---~~g~Di 223 (415)
T 2fq6_A 156 ---IGADIVKHLQ------PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL---DFGIDV 223 (415)
T ss_dssp ---CGGGGGGGCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG---GGTCSE
T ss_pred ---CHHHHHHhhc------cCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc---ccCCeE
Confidence 5667777775 369999999999999999999966 58999 99999999998865311345 368999
Q ss_pred EEEcccccCCCCCCc---eEEEEEeCCCCc
Q 007454 300 LICSFYQIFGENPSG---FGCLFVKKSTVP 326 (603)
Q Consensus 300 lv~S~hK~fG~~P~G---~G~L~vkk~~~~ 326 (603)
+++|+||++| |.| .|+++.+++.++
T Consensus 224 v~~S~sK~lg--~~g~~~~G~l~~~~~~~~ 251 (415)
T 2fq6_A 224 SIQAATKYLV--GHSDAMIGTAVCNARCWE 251 (415)
T ss_dssp EEEETTTTTT--CSSSCCCEEEEECTTTHH
T ss_pred EEEeCccccC--CCCCceEEEEEeCHHHHH
Confidence 9999999999 545 699998876543
No 62
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.81 E-value=2.2e-20 Score=200.20 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=103.6
Q ss_pred ccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCC------------cc-c---c
Q 007454 162 LLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWP------------RL-R---I 225 (603)
Q Consensus 162 ~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~------------~g-~---i 225 (603)
+.++......++++|++|++++|++ +.++|...++++..++. .-+.|.+|......++ .| . +
T Consensus 47 ~~~~~~~~~~~~~lr~~la~~~g~~-~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 124 (393)
T 1n8p_A 47 YEYSRSQNPNRENLERAVAALENAQ-YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT 124 (393)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred cceecCCChhHHHHHHHHHHHhCCC-cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEe
Confidence 4455555667889999999999986 45555543344444333 2234444443332211 00 0 1
Q ss_pred ---CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhC----CcEEEEeccccCCCCCCCCCCCCCCC
Q 007454 226 ---NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEN----DWHILIDACALGPKDMDSFGLSLVRP 297 (603)
Q Consensus 226 ---~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~----g~~vlvDAaq~~~~~m~~ldls~~~~ 297 (603)
+ ++|+++|. ++|++|++++.+|+||.++|++.| ++|+++ |+++++|++|..+. . .++..+++
T Consensus 125 ~~~d-~~l~~~i~------~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~--~-~~~~~~~~ 194 (393)
T 1n8p_A 125 NDLL-NDLPQLIK------ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY--I-SNPLNFGA 194 (393)
T ss_dssp SSHH-HHHHHHSC------SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH--H-CCGGGGTC
T ss_pred CCCh-HHHHHhcc------cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccc--c-CCHHHcCC
Confidence 4 67777775 369999999999999999999966 589999 99999999998876 2 24445689
Q ss_pred cEEEEcccccCCCCCCc--e-EEEEEe
Q 007454 298 DFLICSFYQIFGENPSG--F-GCLFVK 321 (603)
Q Consensus 298 Dflv~S~hK~fG~~P~G--~-G~L~vk 321 (603)
|++++|+||+|| |.| + |+++++
T Consensus 195 di~~~S~sK~~g--~~G~rigG~~~~~ 219 (393)
T 1n8p_A 195 DIVVHSATKYIN--GHSDVVLGVLATN 219 (393)
T ss_dssp SEEEEETTTTTT--CSSCCCCEEEEES
T ss_pred eEEEEECccccc--CCCCceeEEEEeC
Confidence 999999999999 778 7 887776
No 63
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.80 E-value=1.5e-17 Score=184.35 Aligned_cols=308 Identities=10% Similarity=0.043 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCC--CcEEEeccC-ch-----------------------------------HHHHHHHHHH
Q 007454 167 QESGLESAMKKRIMDFLNISE--NDYVYDYES-EA-----------------------------------VEAMIRTSEK 208 (603)
Q Consensus 167 ~~~~~~~~aR~~Ia~~lna~~--~e~vf~~es-~s-----------------------------------V~~~~~~a~~ 208 (603)
...++++++++.+++++|.++ ++.+|+... .+ ...+.+.++.
T Consensus 132 ~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~ 211 (511)
T 3vp6_A 132 VFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA 211 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHH
Confidence 356788899999999999984 567665321 11 1112233344
Q ss_pred cCC---EEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454 209 RGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP 284 (603)
Q Consensus 209 ~Ga---~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~ 284 (603)
.|. +++.++.++ +++++.++|+++|..++.....+++|++++.+|.||.+.|++.| ++|+++|+++|+|+++.++
T Consensus 212 ~g~g~~~~~~v~~d~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~ 290 (511)
T 3vp6_A 212 LGFGTDNVILIKCNE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG 290 (511)
T ss_dssp TTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred cCCCCCcEEEeecCC-CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhh
Confidence 466 788888874 78999999999997533223348999999999999999999966 5899999999999998776
Q ss_pred CCCC---CCCCC-CCCCcEEEEcccccCCCCCCceEEEEEeCCCC-cC---cCCCCCCCceeccccccccccccccCCCC
Q 007454 285 KDMD---SFGLS-LVRPDFLICSFYQIFGENPSGFGCLFVKKSTV-PI---LVDNTSSGMVSLLPAKKQLWLTDEFSSCE 356 (603)
Q Consensus 285 ~~m~---~ldls-~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~-~~---L~p~~~gG~v~~~~~~~~~~~~~~~~~~~ 356 (603)
.-.. ...+. ..++|++++++|||||. |.|.|++++|+... .. ..+.+..+.-. .....+ +
T Consensus 291 ~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~---~~~~~~--------~ 358 (511)
T 3vp6_A 291 LLMSRKHRHKLNGIERANSVTWNPHKMMGV-LLQCSAILVKEKGILQGCNQMHASYLFQQDK---HYDVSY--------D 358 (511)
T ss_dssp GGGCTTTGGGGTTGGGCSEEEECTTSTTCC-CSCCEEEEESSTTHHHHHHCCCCTTTCCSSC---SSCGGG--------C
T ss_pred HhhChhhhhhccCCccCCEEEECcccccCC-CcCeEEEEEeCHHHHHHHhccCCccccCccc---cccccc--------C
Confidence 5100 11222 23689999999999887 89999999988642 21 12222221100 000000 0
Q ss_pred CCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHH
Q 007454 357 TEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTM 436 (603)
Q Consensus 357 ~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~ 436 (603)
.. ... ++.|.. + .++++. .+++.+...|++.
T Consensus 359 ~~-----~~~--~~~~r~-~-~al~~~----------------------------------------~al~~~g~~gl~~ 389 (511)
T 3vp6_A 359 TG-----DKA--IQCGRH-V-DIFKFW----------------------------------------LMWKAKGTVGFEN 389 (511)
T ss_dssp CG-----GGS--SCSSCC-C-CHHHHH----------------------------------------HHHHHHHHHHHHH
T ss_pred cc-----CCC--CCCCCc-h-HHHHHH----------------------------------------HHHHHHhHHHHHH
Confidence 00 000 112221 1 222222 4555555557888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC--CCc-----------cCHHHHHHHHh
Q 007454 437 ISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--REK-----------IEPVLVQKLAD 503 (603)
Q Consensus 437 i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--g~~-----------v~~~~V~~Lad 503 (603)
+.++...+++++.+.|.+++ .++++.+. ....++|+|.+.... +.. +..++.++|.+
T Consensus 390 ~~~~~~~~a~~l~~~L~~~p--------g~~l~~~~--~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 459 (511)
T 3vp6_A 390 QINKCLELAEYLYAKIKNRE--------EFEMVFNG--EPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME 459 (511)
T ss_dssp HHHHHHHHHHHHHHHHHSCT--------TEEESSSS--CCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC--------CEEEEecC--CCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998752 38888742 135788999875321 100 01123333433
Q ss_pred cCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 007454 504 RENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 504 ~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~ 582 (603)
+-.+.+..+ . ...+.+.+|+++ +..+|.+||+++++.|+++-+
T Consensus 460 ~G~~~~~~~-----~-------------------------------~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 460 SGTTMVGYQ-----P-------------------------------QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp HTSCEEEEE-----E-------------------------------ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEE-----E-------------------------------eCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 322222210 0 001124799999 899999999999999988754
No 64
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.2e-19 Score=192.67 Aligned_cols=284 Identities=10% Similarity=0.065 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHcCCC--CCcEEEeccC-chHH-----------------------------HHHHHHHHcCCEEEE
Q 007454 168 ESGLESAMKKRIMDFLNIS--ENDYVYDYES-EAVE-----------------------------AMIRTSEKRGARVMS 215 (603)
Q Consensus 168 ~~~~~~~aR~~Ia~~lna~--~~e~vf~~es-~sV~-----------------------------~~~~~a~~~Ga~V~~ 215 (603)
..++++++++.+++++|++ ++++++.... +++. .+...++..|++++.
T Consensus 105 ~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~ 184 (497)
T 3mc6_A 105 VRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRH 184 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEE
Confidence 3577889999999999998 5677775432 1221 223334456888889
Q ss_pred EeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC----------
Q 007454 216 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP---------- 284 (603)
Q Consensus 216 ~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~---------- 284 (603)
+++++.++.++.++|+++|.. ++++|+++..+|.||.+.|++.| ++|+++|+++++|+++.++
T Consensus 185 v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~ 258 (497)
T 3mc6_A 185 VELDPTTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGY 258 (497)
T ss_dssp ECBCTTTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTC
T ss_pred EecCcccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcc
Confidence 988744788999999988863 68999999999999999999966 5899999999999997632
Q ss_pred -CCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC----CCCCCCceeccccccccccccccCCCCCCc
Q 007454 285 -KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV----DNTSSGMVSLLPAKKQLWLTDEFSSCETEP 359 (603)
Q Consensus 285 -~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~----p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 359 (603)
+ +-+++....++|++++|+||++++ |.|+|++++++..+.... +.+.+|.. .
T Consensus 259 ~~-~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~--------------- 315 (497)
T 3mc6_A 259 KN-LPLLDFRVPGVTSISCDTHKYGFA-PKGSSVIMYRNSDLRMHQYYVNPAWTGGLY------G--------------- 315 (497)
T ss_dssp CS-CCCCSTTSTTCCEEEEETTTTTCC-CSSCEEEECSSHHHHTTTSCCBTTCTTSCB------C---------------
T ss_pred cC-CccccccCCCCcEEEECchhhcCC-CCCceeEEecCHHHHhhhhcccccccCCCc------C---------------
Confidence 2 114777778999999999998654 889999999886543221 11212110 0
Q ss_pred ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454 360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 439 (603)
Q Consensus 360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~ 439 (603)
.+. ..||.+...++++. .+++.+...|+..+.+
T Consensus 316 ---~~~----~~g~~~~~~~~a~~----------------------------------------aal~~l~~~~~~~~~~ 348 (497)
T 3mc6_A 316 ---SPT----LAGSRPGAIVVGCW----------------------------------------ATMVNMGENGYIESCQ 348 (497)
T ss_dssp ---CSS----SCSSCBHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHH
T ss_pred ---CcC----cccCCcchhHHHHH----------------------------------------HHHHHHhHHHHHHHHH
Confidence 000 13444444444433 5777776678888889
Q ss_pred HHHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454 440 RGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW 518 (603)
Q Consensus 440 r~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~ 518 (603)
+...++++|.+.|.+ ++ .++++++ .+++++.|...+.+ ...+.+.+.++||.++.+..
T Consensus 349 ~~~~~~~~l~~~L~~~~~--------g~~~~~~----~~~~~v~~~~~~~~-----~~~l~~~L~~~Gi~v~~~~~---- 407 (497)
T 3mc6_A 349 EIVGAAMKFKKYIQENIP--------DLDIMGN----PRYSVISFSSKTLN-----IHELSDRLSKKGWHFNALQK---- 407 (497)
T ss_dssp HHHHHHHHHHHHHHHSCT--------TCEECSC----CCSSEEEEECTTTT-----HHHHHHHHHTTTCBCEECCS----
T ss_pred HHHHHHHHHHHHHHhcCC--------CEEEecC----CCeeEEEEeCCCCC-----HHHHHHHHHhCCEEEecCCC----
Confidence 999999999999998 43 2677765 36789999876533 34455555667998764311
Q ss_pred CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
...+|+++. .+|.+||+++++.|++.+..-
T Consensus 408 -----------------------------------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 408 -----------------------------------PVALHMAFT-RLSAHVVDEICDILRTTVQEL 437 (497)
T ss_dssp -----------------------------------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHH
T ss_pred -----------------------------------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHH
Confidence 125799998 789999999999999988653
No 65
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.80 E-value=2.1e-18 Score=180.78 Aligned_cols=334 Identities=8% Similarity=-0.010 Sum_probs=198.1
Q ss_pred eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCc
Q 007454 110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND 189 (603)
Q Consensus 110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e 189 (603)
|+|+ .+++++.+++++.+.+... ..++ ....++.|++|++++|++ +
T Consensus 4 i~~~---~~~~~~~v~~a~~~~~~~~-------------------~~~~----------~~~~~~l~~~la~~~~~~--~ 49 (375)
T 2fnu_A 4 FAYS---EPCLDKEDKKAVLEVLNSK-------------------QLTQ----------GKRSLLFEEALCEFLGVK--H 49 (375)
T ss_dssp EESC---CCCCCHHHHHHHHHHHTSS-------------------CCSS----------SHHHHHHHHHHHHHHTCS--E
T ss_pred cccC---CCCCCHHHHHHHHHHHHcC-------------------cccC----------ChHHHHHHHHHHHHhCCC--e
Confidence 5553 5788999999987653210 0122 134678999999999986 6
Q ss_pred EEEeccC-chHHH------------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454 190 YVYDYES-EAVEA------------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR 244 (603)
Q Consensus 190 ~vf~~es-~sV~~------------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t 244 (603)
++++... +++.. ....++..|+++..++++. ++.++.++|++.|.. ++
T Consensus 50 v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~------~~ 122 (375)
T 2fnu_A 50 ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKN-DGNIDELALEKLINE------RT 122 (375)
T ss_dssp EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCT-TSSBCGGGSGGGCCT------TE
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCC-CCCCCHHHHHhhcCc------Cc
Confidence 6554221 12211 2223445688888888874 557888888887752 57
Q ss_pred eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCC--CCCCC-CcEEEEcccccCCCCCCceEEEEE
Q 007454 245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFG--LSLVR-PDFLICSFYQIFGENPSGFGCLFV 320 (603)
Q Consensus 245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ld--ls~~~-~Dflv~S~hK~fG~~P~G~G~L~v 320 (603)
++|++.+. ||.+.|++.+ ++|+++|+++++|+++..+. .+.+ +..++ +++.++|+||+|| | |+|++++
T Consensus 123 ~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~~~i~~~s~s~~K~~~--~-g~g~~~~ 194 (375)
T 2fnu_A 123 KAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGS--EYQNKKVGGFALASVFSFHAIKPIT--T-AEGGAVV 194 (375)
T ss_dssp EEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTC--EETTEETTSSSSEEEEECCTTSSSC--C-SSCEEEE
T ss_pred eEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCC--eECCeeccccCCeEEEeCCCCCCcc--c-cCceEEE
Confidence 88766654 9999999866 58999999999999998876 2323 33333 4444555569998 8 9999999
Q ss_pred eC--CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh-hhhhhhhhhcCccccchhHH
Q 007454 321 KK--STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS-GPMSIEMRQSGKLEQGEISE 397 (603)
Q Consensus 321 kk--~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~-gi~gl~~~~~~~~~~~~i~~ 397 (603)
++ ++.+.+++...+|... ...| . ++.++.++. ++..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~-----~~~~------------------~--~~~~~~~~~~~~~~~~-------------- 235 (375)
T 2fnu_A 195 TNDSELHEKMKLFRSHGMLK-----KDFF------------------E--GEVKSIGHNFRLNEIQ-------------- 235 (375)
T ss_dssp ESCHHHHHHHHHHTBTTEEE-----SSSS------------------C--EEESSCCCBCCCCHHH--------------
T ss_pred eCCHHHHHHHHHHHhcCCcc-----cccc------------------c--cccccccccCCCCHHH--------------
Confidence 63 3444444332233210 0000 0 222332222 222221
Q ss_pred HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC-
Q 007454 398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD- 476 (603)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~- 476 (603)
.++.+...-+++.+.++.+.++++|.+.|.+++ .++++++.....
T Consensus 236 --------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~~~~~~ 281 (375)
T 2fnu_A 236 --------------------------SALGLSQLKKAPFLMQKREEAALTYDRIFKDNP--------YFTPLHPLLKDKS 281 (375)
T ss_dssp --------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCS--------SEEESGGGCSSCC
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CccccCCCCCCCc
Confidence 233332234678888999999999999998753 277877631111
Q ss_pred CCCEEEEEEccCCCCcc-CHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454 477 RGPALAFNVFDWKREKI-EPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT 555 (603)
Q Consensus 477 rg~ivsFnv~~~~g~~v-~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 555 (603)
.+.++.+.+++. + + +...+.+.+.++||.++. .|.+...... +.......+ .... .....+
T Consensus 282 ~~~~~~~~~~~~-~--~~~~~~l~~~L~~~gi~v~~--~~~p~~~~~~-------~~~~~~~~~---~~~~---~~~~~~ 343 (375)
T 2fnu_A 282 SNHLYPILMHQK-F--FTCKKLILESLHKRGILAQV--HYKPIYQYQL-------YQQLFNTAP---LKSA---EDFYHA 343 (375)
T ss_dssp CCSCEEEEECGG-G--GGGHHHHHHHHHHTTEECBC--CCCCGGGSHH-------HHHHHCCCC---CHHH---HHHHHH
T ss_pred ceEEEEEEeCcc-c--cchHHHHHHHHHHCCCCccc--cccccccchh-------hhcCCCccC---ChHH---HHHHhC
Confidence 234455666531 1 1 234455555678999994 4543321111 000000000 0000 001125
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 556 VVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.||+|++.++|.+||+++++.|+++++.
T Consensus 344 ~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 344 EISLPCHANLNLESVQNIAHSVLKTFES 371 (375)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998765
No 66
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.80 E-value=8e-18 Score=175.35 Aligned_cols=304 Identities=11% Similarity=0.056 Sum_probs=203.3
Q ss_pred CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (603)
Q Consensus 107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna 185 (603)
++.+.|+.+...+ .++.+++++.+.+... ...| .....+.|++|++++|+
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------------------~~y~----------~~~~~~l~~~la~~~~~ 66 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAVVKA-------------------NRYA----------KNEILMLGNKLAAHHQV 66 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTGGGT-------------------TSCC----------HHHHHHHHHHHHHHTTS
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHhhC-------------------cCCC----------CCchHHHHHHHHHHhCC
Confidence 5578888765553 6788888887643210 0111 12456899999999999
Q ss_pred CCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454 186 SENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ 243 (603)
Q Consensus 186 ~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~ 243 (603)
++++++++... .+.......++..|+++..++.++ ++.++.++|++.|... ++
T Consensus 67 ~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~l~~~----~~ 141 (354)
T 3ly1_A 67 EAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD-NWAFDIEGLKAAVAAY----SG 141 (354)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHHHTC----SS
T ss_pred ChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhccC----CC
Confidence 99999775321 112223455667899999999874 6889999999999731 26
Q ss_pred eeEEEEeCccccccccccHHHH-HHHHh--CCcEEEEeccccCCCCCCC-----CC-CCCC-CCcEEEEcccccCCCCCC
Q 007454 244 RGLFVFPLHSRMTGARYPYLWM-RIAQE--NDWHILIDACALGPKDMDS-----FG-LSLV-RPDFLICSFYQIFGENPS 313 (603)
Q Consensus 244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~~~~~m~~-----ld-ls~~-~~Dflv~S~hK~fG~~P~ 313 (603)
++++.++..+|.||.++|.+.+ ++++. +|+++++|.++..... .. +. +... +.++++.|++|+||.+..
T Consensus 142 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 220 (354)
T 3ly1_A 142 PSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVN-DPRFRSISPMITQGAENIILLKTFSKIHAMAGM 220 (354)
T ss_dssp CEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCC-CTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGG
T ss_pred CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhcc-ccccCCHHHHhhhcCCCEEEEeeChhhccChhh
Confidence 8999999999999999999855 46665 8999999998764320 10 11 1223 567999999999983223
Q ss_pred ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454 314 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 393 (603)
Q Consensus 314 G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~ 393 (603)
++|++++++++.+.+... ...+++|..+..++.
T Consensus 221 r~G~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~---------- 253 (354)
T 3ly1_A 221 RVGYAVAHPTVIALMGRY-------------------------------------VAGEKINFSGVDAAL---------- 253 (354)
T ss_dssp CCEEEECCHHHHHHHGGG-------------------------------------TTCSCCCHHHHHHHH----------
T ss_pred hheeeecCHHHHHHHHHh-------------------------------------cCCCCCCHHHHHHHH----------
Confidence 378888765544333210 012344544443332
Q ss_pred hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCC
Q 007454 394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI 473 (603)
Q Consensus 394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~ 473 (603)
++++.. -.++.+.++.+.++++|.+.|.++ | +.++.
T Consensus 254 ------------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~------~---~~~~~--- 289 (354)
T 3ly1_A 254 ------------------------------ASMNDS--AFITYSKKSNDVSRQILLKALEDL------K---LPYLP--- 289 (354)
T ss_dssp ------------------------------HHTTCH--HHHHHHHHHHHHHHHHHHHHHHHH------T---CCBCC---
T ss_pred ------------------------------HHhcCH--HHHHHHHHHHHHHHHHHHHHHHHC------C---CeECC---
Confidence 233321 135677888889999999999875 2 22332
Q ss_pred CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454 474 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 553 (603)
Q Consensus 474 ~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 553 (603)
..+..+.+.+++ +...+.+.+.++||.++ |.+|. .
T Consensus 290 --~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~-g~~~~------------------------------------~ 324 (354)
T 3ly1_A 290 --SEGNFVFHQLVV------PLKDYQTHMADAGVLIG-RAFPP------------------------------------A 324 (354)
T ss_dssp --CCSSEEEEECSS------CHHHHHHHHHHTTEECC-CCCTT------------------------------------C
T ss_pred --CCceEEEEECCC------CHHHHHHHHHHCCEEEe-ecCCC------------------------------------C
Confidence 246778888765 23344444556899999 76542 1
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 554 ITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 554 ~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
.+.||+|++ |.+||+++++.|++++.+.
T Consensus 325 ~~~iRis~~---~~~~i~~~~~~l~~~l~~~ 352 (354)
T 3ly1_A 325 DNWCRISLG---TPQEMQWVADTMREFRKKS 352 (354)
T ss_dssp TTEEEEECC---CHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcC---CHHHHHHHHHHHHHHHHhh
Confidence 258999976 8999999999999988653
No 67
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.79 E-value=2.2e-18 Score=182.78 Aligned_cols=325 Identities=11% Similarity=0.035 Sum_probs=208.2
Q ss_pred eecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHH-HHHHHHHHHHHHHcCCCCCcE
Q 007454 112 LDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQES-GLESAMKKRIMDFLNISENDY 190 (603)
Q Consensus 112 LDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~-~~~~~aR~~Ia~~lna~~~e~ 190 (603)
..+++.+++++.+++++.+.+... +..+++.+....|.... .+.+.+|+++++++|++++++
T Consensus 27 ~~~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i 89 (407)
T 2dkj_A 27 ELIASENFVSKQVREAVGSVLTNK-----------------YAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANV 89 (407)
T ss_dssp ECCTTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC
T ss_pred eeccCCCCCCHHHHHHHHhhhhcC-----------------cccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceE
Confidence 345666777999999987654210 01133333322233332 344458999999999986656
Q ss_pred EEeccCchHHHHHHHHHHcCCEEEEE------------------------ec--cCCccccCHHHHHHHHhhcCCCCCCe
Q 007454 191 VYDYESEAVEAMIRTSEKRGARVMSA------------------------EF--SWPRLRINSEKLRKMVVSKGKKKKQR 244 (603)
Q Consensus 191 vf~~es~sV~~~~~~a~~~Ga~V~~~------------------------~~--~~~~g~i~~~~L~~~l~~~~~~~~~t 244 (603)
++...+.++..++..+.+.|.+|... ++ +..++.++.++|++.|... ++
T Consensus 90 ~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~ 164 (407)
T 2dkj_A 90 QPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH-----RP 164 (407)
T ss_dssp CCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH-----CC
T ss_pred EecchHHHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhc-----CC
Confidence 55444444444444433344443322 22 2114568899999999731 47
Q ss_pred eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEEEcccccCCCCCCceEEEEE
Q 007454 245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLICSFYQIFGENPSGFGCLFV 320 (603)
Q Consensus 245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls---~~~~Dflv~S~hK~fG~~P~G~G~L~v 320 (603)
++|.++..+| |...|++.+ ++|+++|+++++|.++..|. ...+.. .-.+|++++|+||++++ |.| |++++
T Consensus 165 ~~v~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~~~~di~~~s~sK~l~g-~~~-G~~~~ 238 (407)
T 2dkj_A 165 KVIVAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGL--VAAGLHPNPLPYAHVVTSTTHKTLRG-PRG-GLILS 238 (407)
T ss_dssp SEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHH--HHTTCSCCCTTTCSEEEEESSGGGCC-CSC-EEEEE
T ss_pred eEEEEecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccc--cccCccCCccccccEEEEeccccCCC-CCc-eEEEE
Confidence 8888854444 688999865 58999999999999987632 111111 01389999999998865 776 99999
Q ss_pred e-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454 321 K-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR 399 (603)
Q Consensus 321 k-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~ 399 (603)
+ +++.+.+.+.... +..++++...++++.
T Consensus 239 ~~~~~~~~l~~~~~~----------------------------------~~~~~~~~~~~~a~~---------------- 268 (407)
T 2dkj_A 239 NDPELGKRIDKLIFP----------------------------------GIQGGPLEHVIAGKA---------------- 268 (407)
T ss_dssp SCHHHHHHHHHHHTT----------------------------------TTCSSCCHHHHHHHH----------------
T ss_pred CCHHHHHHHHhhhcc----------------------------------cccCCCcHHHHHHHH----------------
Confidence 8 4654434321000 124555665554433
Q ss_pred hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454 400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP 479 (603)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ 479 (603)
++++.+...+++.+.++.+.+.++|.+.|.++ | ++++++. ..++
T Consensus 269 ------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~~~ 312 (407)
T 2dkj_A 269 ------------------------VAFFEALQPEFKEYSRLVVENAKRLAEELARR------G---YRIVTGG---TDNH 312 (407)
T ss_dssp ------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---CSSS
T ss_pred ------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC------C---ceeecCC---CCce
Confidence 56776544467889999999999999999886 2 5666642 3688
Q ss_pred EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454 480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA 559 (603)
Q Consensus 480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~ 559 (603)
++.+.+++. + ++...+.+.+.++||.++.|..... .. .....+.+|+
T Consensus 313 ~~~~~~~~~-~--~~~~~~~~~l~~~gi~v~~~~~~~~--~~----------------------------~~~~~~~iRi 359 (407)
T 2dkj_A 313 LFLVDLRPK-G--LTGKEAEERLDAVGITVNKNAIPFD--PK----------------------------PPRVTSGIRI 359 (407)
T ss_dssp EEEEECGGG-T--CCHHHHHHHHHHTTEECEECCCTTC--SS----------------------------CTTTCSEEEE
T ss_pred EEEEECccc-C--CCHHHHHHHHHHcCceecCCcCccc--cc----------------------------cccCCCceee
Confidence 999988742 1 2344555656789999998753100 00 0011258999
Q ss_pred ecCCC----CCHHHHHHHHHHHHHHHhh
Q 007454 560 SLGYL----ANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 560 Slg~~----tt~eDVd~l~~~l~~~l~~ 583 (603)
|++.+ .|.+|++++++.|+++++.
T Consensus 360 s~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 360 GTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp ECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 99876 7999999999999999877
No 68
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.79 E-value=3.6e-18 Score=180.20 Aligned_cols=271 Identities=13% Similarity=0.150 Sum_probs=189.6
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEecc--CCccccCHH
Q 007454 173 SAMKKRIMDFLNISENDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFS--WPRLRINSE 228 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~--~~~g~i~~~ 228 (603)
.+.|++|++++++++++++++... +++.. ....++..|+++..++.+ ..++.++.+
T Consensus 64 ~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~ 143 (381)
T 1v2d_A 64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLS 143 (381)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHH
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHH
Confidence 479999999999998888775321 11111 223456678999988876 235678999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCC---CCCCCCCCC--CCCCcE
Q 007454 229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGP---KDMDSFGLS--LVRPDF 299 (603)
Q Consensus 229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~---~~m~~ldls--~~~~Df 299 (603)
+|++.|.. ++++|.++..+|.||.++| ++.+ ++|+++|+++++|.++... + ...++. ..+.|+
T Consensus 144 ~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~--~~~~~~~~~~~~~~ 215 (381)
T 1v2d_A 144 ALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE--RPRRLREFAPERTF 215 (381)
T ss_dssp HHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS--CCCCHHHHCTTTEE
T ss_pred HHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCC--CCCCHHHhcCCCEE
Confidence 99888752 6899999999999999998 4433 5789999999999998742 2 123333 357999
Q ss_pred EEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 300 LICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 300 lv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
++.|+||+|| +.| +|++++++++++.+.... . ....+.+..
T Consensus 216 ~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~--------------------------------~---~~~~~~~~~ 258 (381)
T 1v2d_A 216 TVGSAGKRLE--ATGYRVGWIVGPKEFMPRLAGMR--------------------------------Q---WTSFSAPTP 258 (381)
T ss_dssp EEEEHHHHTT--CGGGCCEEEECCTTTHHHHHHHH--------------------------------H---HHTSSCCHH
T ss_pred EEeechhhcC--CcccceEEEEeCHHHHHHHHHHH--------------------------------h---hcccCCCcH
Confidence 9999999999 558 899999877654332100 0 112344444
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD-SLGLTMISRRGRCLINWLVNALMKLQ 456 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~-~iGl~~i~~r~~~L~~~L~~~L~~L~ 456 (603)
...++. .+++... .-+++.+.++.+.+.++|.+.|.++
T Consensus 259 ~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 297 (381)
T 1v2d_A 259 LQAGVA----------------------------------------EALKLARREGFYEALREGYRRRRDLLAGGLRAM- 297 (381)
T ss_dssp HHHHHH----------------------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHH----------------------------------------HHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 433322 4555432 2246788889999999999999874
Q ss_pred CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454 457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 536 (603)
Q Consensus 457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~ 536 (603)
| +++++|. .+..+.+.+++. + +.+++.++||.++.|..|...
T Consensus 298 -----g---~~~~~~~----~~~~~~~~~~~~-----~---~~~~l~~~gi~v~~g~~~~~~------------------ 339 (381)
T 1v2d_A 298 -----G---LRVYVPE----GTYFLMAELPGW-----D---AFRLVEEARVALIPASAFYLE------------------ 339 (381)
T ss_dssp -----T---CCEECCS----BSSEEEEECTTC-----C---HHHHHHHTCEECEEGGGGCSS------------------
T ss_pred -----C---CEecCCC----cceEEEEecChH-----h---HHHHHHhCCEEEecchHhCCC------------------
Confidence 2 4555552 355777777653 1 667788899999988776431
Q ss_pred ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
....+.||+|++. +.+||+++++.|+++++.
T Consensus 340 --------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 340 --------------DPPKDLFRFAFCK--TEEELHLALERLGRVVNS 370 (381)
T ss_dssp --------------SCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred --------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 0123689999997 999999999999998765
No 69
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.79 E-value=1.4e-17 Score=184.14 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC--CcE--EEeccC-chHH-----------------------------HHHHHHHHcCCEE
Q 007454 168 ESGLESAMKKRIMDFLNISE--NDY--VYDYES-EAVE-----------------------------AMIRTSEKRGARV 213 (603)
Q Consensus 168 ~~~~~~~aR~~Ia~~lna~~--~e~--vf~~es-~sV~-----------------------------~~~~~a~~~Ga~V 213 (603)
..++++++++.+++++|+++ +++ +|+... +++. .+...++..|+++
T Consensus 137 ~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v 216 (514)
T 3mad_A 137 TAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKL 216 (514)
T ss_dssp HHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCee
Confidence 34677788999999999975 565 654322 1211 1223344558889
Q ss_pred EEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC--------
Q 007454 214 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP-------- 284 (603)
Q Consensus 214 ~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~-------- 284 (603)
+.+++++ ++.++.++|+++|.. ++++|+++..+|.||.+.|++.| ++|+++|+++++|+++.+.
T Consensus 217 ~~v~~~~-~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~ 289 (514)
T 3mad_A 217 VRTPLDA-DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERL 289 (514)
T ss_dssp EEECBCT-TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHT
T ss_pred EEeeeCC-CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhc
Confidence 9999885 889999999999863 68999999999999999999966 5899999999999986532
Q ss_pred -CCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC----CCCCCCceeccccccccccccccCCCCCCc
Q 007454 285 -KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV----DNTSSGMVSLLPAKKQLWLTDEFSSCETEP 359 (603)
Q Consensus 285 -~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~----p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 359 (603)
+...+++....++|++++|+||+++. |.|+|++++++....... +.+.+|.. .
T Consensus 290 g~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------ 347 (514)
T 3mad_A 290 GYPVPPFDFRLEGVTSVSADTHKYGYG-AKGTSVILYRRPDLLHYQYFIAADWPGGLY---------F------------ 347 (514)
T ss_dssp TCCCCCCSTTSTTCCEEEECTTTTTCC-CSSCEEEEESSHHHHTTTCEEESSCTTCSE---------E------------
T ss_pred CCCCCcccccCCCCcEEEECchhccCC-CCCeEEEEEeCHHHhccccccccccCCCcc---------c------------
Confidence 21125777778999999999998544 889999999986543221 11111110 0
Q ss_pred ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454 360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 439 (603)
Q Consensus 360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~ 439 (603)
.. ...|+.+...++++. .+++.+...|++.+.+
T Consensus 348 -----~~--~~~gs~~~~~~~a~~----------------------------------------aal~~l~~~~~~~~~~ 380 (514)
T 3mad_A 348 -----SP--TFAGSRPGALSATAW----------------------------------------AAMLSLGEEGYLDATR 380 (514)
T ss_dssp -----ES--SSCSSCCHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHH
T ss_pred -----CC--ccCCCCchHHHHHHH----------------------------------------HHHHHHhHHHHHHHHH
Confidence 00 125676666665544 5777766668889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccC
Q 007454 440 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF 519 (603)
Q Consensus 440 r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~ 519 (603)
+.+.++++|.+.|.+++ .++++++. .+++.|...+.+ ...+.+.+.++||.+ .|..|
T Consensus 381 ~~~~~~~~l~~~L~~~~--------g~~~~~~~-----~~~~~~~~~~~~-----~~~l~~~L~~~Gi~v-~g~~~---- 437 (514)
T 3mad_A 381 RILQAADRLKAGVRAIP--------SLKILGDP-----LWVIAVASDELN-----IYQVMEEMAGRGWRL-NGLHR---- 437 (514)
T ss_dssp HHHHHHHHHHHHHHTST--------TCEESSCC-----SSEEEEECSSSC-----HHHHHHHHHTTTCBC-EEETT----
T ss_pred HHHHHHHHHHHHHhhCC--------CeEEeCCC-----eEEEEEeCCCCC-----HHHHHHHHHhcCCEe-ccCCC----
Confidence 99999999999999863 26777653 348888775433 334444445568876 22111
Q ss_pred CchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCC-CCHHHHHHHHHHHHHHHhh
Q 007454 520 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 520 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~-tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.+|++++.. ++.+||+++++.|++.+.+
T Consensus 438 ----------------------------------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~ 468 (514)
T 3mad_A 438 ----------------------------------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQ 468 (514)
T ss_dssp ----------------------------------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred ----------------------------------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 14799999844 5679999999999998865
No 70
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.79 E-value=6.9e-18 Score=177.78 Aligned_cols=282 Identities=12% Similarity=0.042 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHcC--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCc--
Q 007454 169 SGLESAMKKRIMDFLN--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPR-- 222 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~ln--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~-- 222 (603)
.++.+++++.+++.+| +++++++|+... .+.......++..|+++..+++++..
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSK 144 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCc
Confidence 4667778888888888 678888775431 12223344566778999988885322
Q ss_pred cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEeccccC----CCCCCCCCCCC
Q 007454 223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALG----PKDMDSFGLSL 294 (603)
Q Consensus 223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~ 294 (603)
..++.++|++.|.. +++++++++..+|.||.++|.+ .+ ++|+++|+++++|.++.. ++ ...++..
T Consensus 145 ~~~d~~~l~~~l~~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~ 217 (391)
T 3dzz_A 145 YSVNWADLEEKLAT-----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFT 217 (391)
T ss_dssp EECCHHHHHHHHTS-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGG
T ss_pred eeecHHHHHHHHhc-----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--Cceehhh
Confidence 34899999999963 3689999999999999996654 33 468999999999999764 32 2344444
Q ss_pred CC---Cc--EEEEcccccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccc
Q 007454 295 VR---PD--FLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 368 (603)
Q Consensus 295 ~~---~D--flv~S~hK~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 368 (603)
+. +| +++.|+||+||.+..++|+++++ +++.+.+.... ..
T Consensus 218 ~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--------------------------------~~-- 263 (391)
T 3dzz_A 218 VDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF--------------------------------FL-- 263 (391)
T ss_dssp SCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH--------------------------------HH--
T ss_pred cCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH--------------------------------Hh--
Confidence 43 67 99999999998322348999886 44433332100 00
Q ss_pred cccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007454 369 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 448 (603)
Q Consensus 369 ~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L 448 (603)
....++|..+..++. ++++.... .++.+.++.+.+.++|
T Consensus 264 ~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~l 302 (391)
T 3dzz_A 264 AGIGEPNLLAIPAAI----------------------------------------AAYEEGHD-WLRELKQVLRDNFAYA 302 (391)
T ss_dssp HTCSSCCTTHHHHHH----------------------------------------HHHHHCHH-HHHHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHH----------------------------------------HHHhccHH-HHHHHHHHHHHHHHHH
Confidence 012234444443322 34443211 2677888889999999
Q ss_pred HHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhh
Q 007454 449 VNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKE 526 (603)
Q Consensus 449 ~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~ 526 (603)
.+.|.+ ++ .++++.|. .+..+.+.++.. + ++.. +.++|++++||.++.|..|...
T Consensus 303 ~~~l~~~~~--------~~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~-------- 359 (391)
T 3dzz_A 303 REFLAKEVP--------EVKVLDSN----ASYLAWVDISAL-G--MNAEDFCKYLREKTGLIISAGNGYRGN-------- 359 (391)
T ss_dssp HHHHHHHCT--------TSEECCCC----BSSEEEEECGGG-C--SCHHHHHHHHHHHHCEECEESGGGCTT--------
T ss_pred HHHHHhhCC--------CcEEeccC----ceEEEEEehhhc-C--CCHHHHHHHHHHhCCEEEeCchhhCCC--------
Confidence 999987 53 25666653 244455666542 1 2233 4555557899999999776421
Q ss_pred hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+.+.+|+|++ ++.+||+++++.|++++++
T Consensus 360 --------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 360 --------------------------GHEFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp --------------------------GGGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred --------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 1268999999 7999999999999998754
No 71
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.79 E-value=1.4e-18 Score=183.46 Aligned_cols=317 Identities=13% Similarity=0.136 Sum_probs=199.6
Q ss_pred CCceeeecCCCC----CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIG----LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (603)
Q Consensus 107 ~~~vYLDyaa~t----l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ 182 (603)
++..|+|.++.. +.++.+++++.+.+... ..++..+.+.+| ......+.|++|+++
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~~g--~~~~~~~l~~~la~~ 96 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQF------------------GIGSGGSGHVSG--YSVVHQALEEELAEW 96 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHH------------------CSCCCSBTTTTC--CCHHHHHHHHHHHHH
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHh------------------CCCCCCcCcccC--ChHHHHHHHHHHHHH
Confidence 356799998854 35778888876543210 001111222222 125667899999999
Q ss_pred cCCCCCcEEEeccCchHHHHHH---------------------HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454 183 LNISENDYVYDYESEAVEAMIR---------------------TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK 241 (603)
Q Consensus 183 lna~~~e~vf~~es~sV~~~~~---------------------~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~ 241 (603)
+|++ +.+++...++++..++. .++..|+++..++. ++.++|++.|... +
T Consensus 97 ~g~~-~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~---~ 166 (384)
T 1bs0_A 97 LGYS-RALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASP---C 166 (384)
T ss_dssp HTCS-EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSC---C
T ss_pred hCCC-cEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC------CCHHHHHHHHHhc---C
Confidence 9985 44444333333332222 23344666555542 4788999998742 1
Q ss_pred CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCC-CCCCCCCCcEEEEcccccCCCCCCceE
Q 007454 242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMDS-FGLSLVRPDFLICSFYQIFGENPSGFG 316 (603)
Q Consensus 242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~-ldls~~~~Dflv~S~hK~fG~~P~G~G 316 (603)
+++++++++..+|.||.++|++.+ ++|+++|+++++|.++..+. +..+ .+.-..++|+++.|+||+|| |.| |
T Consensus 167 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--~~G-G 243 (384)
T 1bs0_A 167 PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG--VSG-A 243 (384)
T ss_dssp SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS--SCC-E
T ss_pred CCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh--ccC-c
Confidence 247899999999999999999855 58999999999999986543 0001 11111368999999999999 778 9
Q ss_pred EEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454 317 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS 396 (603)
Q Consensus 317 ~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~ 396 (603)
++++++++++.+.+. + ..| .-.++.|.....++.
T Consensus 244 ~~~~~~~~~~~l~~~---~---------~~~---------------------~~~~~~~~~~~~~~~------------- 277 (384)
T 1bs0_A 244 AVLCSSTVADYLLQF---A---------RHL---------------------IYSTSMPPAQAQALR------------- 277 (384)
T ss_dssp EEEECHHHHHHHHHH---C---------HHH---------------------HSSBCCCHHHHHHHH-------------
T ss_pred EEEeCHHHHHHHHHh---c---------hhh---------------------hcCCCCCHHHHHHHH-------------
Confidence 999987665433310 0 000 001134444433322
Q ss_pred HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454 397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD 476 (603)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~ 476 (603)
++++.+.+..++.+.++.+.+.++|.+.|.++ | ++++. .
T Consensus 278 ---------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~-----~ 316 (384)
T 1bs0_A 278 ---------------------------ASLAVIRSDEGDARREKLAALITRFRAGVQDL------P---FTLAD-----S 316 (384)
T ss_dssp ---------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS------S---CEECS-----C
T ss_pred ---------------------------HHHHHHhccccHHHHHHHHHHHHHHHHHHHhc------C---CcccC-----C
Confidence 46666543234678888999999999999875 2 45542 2
Q ss_pred CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454 477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV 556 (603)
Q Consensus 477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 556 (603)
.++++.+.+++. +....+.+.+.++||.++.|..... ....+.
T Consensus 317 ~~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~~~~~~---------------------------------~~~~~~ 359 (384)
T 1bs0_A 317 CSAIQPLIVGDN----SRALQLAEKLRQQGCWVTAIRPPTV---------------------------------PAGTAR 359 (384)
T ss_dssp CSSBCCEEEESH----HHHHHHHHHHHHTTEECCEECTTSS---------------------------------CTTCEE
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHHCCcEEEeecCCCC---------------------------------CCCCce
Confidence 467777777531 1223343333456999987643210 012368
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Q 007454 557 VTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 557 VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
||+|++.++|.+||+++++.|+++
T Consensus 360 ~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 360 LRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp ECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999865
No 72
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.78 E-value=1.4e-17 Score=176.68 Aligned_cols=296 Identities=13% Similarity=0.063 Sum_probs=183.1
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCchHHH-------------------------HHHHHHHcCCEEEEEe
Q 007454 163 LHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEA-------------------------MIRTSEKRGARVMSAE 217 (603)
Q Consensus 163 ~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~-------------------------~~~~a~~~Ga~V~~~~ 217 (603)
.++........+.|++|++++|++ +.++|...++++.. +...++..|+++..++
T Consensus 45 ~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (386)
T 1cs1_A 45 DYSRRGNPTRDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred ceeCCCCccHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence 344444566789999999999987 56655322222222 2223345566666665
Q ss_pred ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC
Q 007454 218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR 296 (603)
Q Consensus 218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~ 296 (603)
.+ +.++|++.|.. ++++|.+...+|.||.++|++.+ ++|+++|+++++|.++..+. ....+ .++
T Consensus 124 ~~------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~-~~~ 188 (386)
T 1cs1_A 124 QG------DEQALRAALAE------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPA--LQNPL-ALG 188 (386)
T ss_dssp TT------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTT--TCCGG-GGT
T ss_pred CC------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccc--cCCcc-ccC
Confidence 42 68899999873 58999999999999999999966 58999999999999998886 23333 468
Q ss_pred CcEEEEcccccCCCCCCce--EEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454 297 PDFLICSFYQIFGENPSGF--GCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 373 (603)
Q Consensus 297 ~Dflv~S~hK~fG~~P~G~--G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT 373 (603)
+|++++|+||+||. |.|. |++++++ ++++.+.+...+ -.++
T Consensus 189 ~di~~~s~sK~~~~-~~~~~~G~~~~~~~~l~~~l~~~~~~-----------------------------------~~~~ 232 (386)
T 1cs1_A 189 ADLVLHSCTKYLNG-HSDVVAGVVIAKDPDVVTELAWWANN-----------------------------------IGVT 232 (386)
T ss_dssp CSEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHHHHHHHH-----------------------------------HTCB
T ss_pred ceEEEEcCcccccC-CCCceeEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCC
Confidence 99999999999986 7664 9999986 554434321100 0122
Q ss_pred CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454 374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM 453 (603)
Q Consensus 374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~ 453 (603)
.+..+.+... ++++. +....++......++.+.|.
T Consensus 233 ~~~~~~~~~~----------------------------------------~~l~~-----~~~~~~~~~~~~~~l~~~l~ 267 (386)
T 1cs1_A 233 GGAFDSYLLL----------------------------------------RGLRT-----LVPRMELAQRNAQAIVKYLQ 267 (386)
T ss_dssp CCHHHHHHHH----------------------------------------HHHTT-----HHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHH----------------------------------------hcccH-----HHHHHHHHHHHHHHHHHHHh
Confidence 2322221111 23322 22233334444556666666
Q ss_pred cCCC------CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEe---eC------cccCcc
Q 007454 454 KLQH------PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS---YG------SLHHIW 518 (603)
Q Consensus 454 ~L~h------~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr---~G------~~C~~~ 518 (603)
+++. +.-...|.++++++.. ..++++++|.+.+. .+.+.+++++.||.++ .| ++|...
T Consensus 268 ~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~ 340 (386)
T 1cs1_A 268 TQPLVKKLYHPSLPENQGHEIAARQQ-KGFGAMLSFELDGD------EQTLRRFLGGLSLFTLAESLGGVESLISHAATM 340 (386)
T ss_dssp TCTTEEEEECTTSTTSTTHHHHHHHC-SSCCSEEEEEESSC------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGT
T ss_pred cCCCeEEEECCCCCCCccHHHHHHhc-CCCceEEEEEECCC------HHHHHHHHHhCCcceEcccCCCcceeeeccccc
Confidence 5421 0000011122222211 23589999998752 3457777788999998 46 556543
Q ss_pred CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
.+... ..+++..++ ...+.||+|++..++.++|++|.++|+++.
T Consensus 341 ~~~~~---~~~~~~~~g----------------~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 341 THAGM---APEARAAAG----------------ISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp TTTTS---CHHHHHHHT----------------CCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred ccccC---CHHHHHhcC----------------CCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 21110 012222221 123799999999999999999999998764
No 73
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.78 E-value=2e-17 Score=181.24 Aligned_cols=330 Identities=11% Similarity=0.020 Sum_probs=202.9
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~ 187 (603)
..+||+ ..++...+.+++++.+.+.. .||......+.-..++++++++.+++++|++.
T Consensus 67 ~~~~lg-~~~~~~~p~v~~~~~~~~~~---------------------~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~ 124 (474)
T 1wyu_B 67 TFYPLG-SCTMKYNPKLHEEAARLFAD---------------------LHPYQDPRTAQGALRLMWELGEYLKALTGMDA 124 (474)
T ss_dssp SCCCBT-TTCCCCCCHHHHHHHHTTSS---------------------CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred Cccccc-cccccCCHHHHHHHHHHHHh---------------------cCCCCchhhChHHHHHHHHHHHHHHHHHCCCc
Confidence 468898 55666667777776653211 12211110112245778888899999988864
Q ss_pred CcEEEecc-CchHHH----H--------------------------HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhh
Q 007454 188 NDYVYDYE-SEAVEA----M--------------------------IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS 236 (603)
Q Consensus 188 ~e~vf~~e-s~sV~~----~--------------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~ 236 (603)
.++|+.. ++++.. + ...++..|++|+.++++ +++.++.++|+++|..
T Consensus 125 -~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~-~~~~~d~~~L~~~i~~ 202 (474)
T 1wyu_B 125 -ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG-PEGEVDLEALKRELGP 202 (474)
T ss_dssp -EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC-TTSSBCHHHHHHHCST
T ss_pred -eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC-CCCCcCHHHHHHhhCC
Confidence 2333321 112111 1 12234457788888887 4788999999999863
Q ss_pred cCCCCCCeeEEEEeCcccccccc-ccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC-
Q 007454 237 KGKKKKQRGLFVFPLHSRMTGAR-YPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS- 313 (603)
Q Consensus 237 ~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~- 313 (603)
+|++|++... |.||.+ .|++.| ++|+++|+++++|+++..+. +..++...+++|++++|+||+||. |.
T Consensus 203 ------~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~-~g~~~~~~~g~di~~~s~~K~~~~-p~g 273 (474)
T 1wyu_B 203 ------HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAI-MGWARPGDMGFDVVHLNLHKTFTV-PHG 273 (474)
T ss_dssp ------TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGT-TTTCCHHHHTCSEEECCTTTTTCC-CCT
T ss_pred ------CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhh-ccCCCcccCCCcEEEEeCcccccc-CCC
Confidence 5899999885 679998 699866 58999999999999997665 123444556899999999999886 75
Q ss_pred ----ceEEEEEeCCCCcCcCCCCCC--CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhc
Q 007454 314 ----GFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQS 387 (603)
Q Consensus 314 ----G~G~L~vkk~~~~~L~p~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~ 387 (603)
|+|+++++++.++.+...+.| |. .+... + .+. . ..++ ++.++.|..+. .
T Consensus 274 ~gG~~~G~~~~~~~l~~~l~~~~~~~~g~-~~~~~----~-~~~------~----~~~~--~~~~~~~~~~~---~---- 328 (474)
T 1wyu_B 274 GGGPGSGPVGVKAHLAPYLPVPLVERGEE-GFYLD----F-DRP------K----SIGR--VRSFYGNFLAL---V---- 328 (474)
T ss_dssp TSCCCCCCEEECGGGGGGCCSCEEEECSS-CEEEE----C-CCT------T----CCCC--SSSTTSCHHHH---H----
T ss_pred CCCCCeEEEEEcHHHHHhCCCCeeeccCC-eeEec----c-cCc------c----cCcc--cccCcCcHHHH---H----
Confidence 699999999887666533332 21 00000 0 000 0 0012 34555554322 1
Q ss_pred CccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454 388 GKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL---GLTMISRRGRCLINWLVNALMKLQHPNTEGNA 464 (603)
Q Consensus 388 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i---Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p 464 (603)
+++..+..+ ++....++.+.++++|.+.|.++ |
T Consensus 329 ------------------------------------aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~------g-- 364 (474)
T 1wyu_B 329 ------------------------------------RAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK------G-- 364 (474)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T--
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------C--
Confidence 244444333 45666888889999999999875 2
Q ss_pred eEEE-eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccc
Q 007454 465 LVKI-YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD 543 (603)
Q Consensus 465 lv~I-ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 543 (603)
+++ +++. .-+..++.| . .+ ++...+.+.+.++||.+....+
T Consensus 365 -~~~~~~~~--~~~~~~~~~--~--~~--~~~~~l~~~L~~~Gi~~~~~~~----------------------------- 406 (474)
T 1wyu_B 365 -YRVPYDGP--SMHEFVAQP--P--EG--FRALDLAKGLLELGFHPPTVYF----------------------------- 406 (474)
T ss_dssp -CBCSSCSS--CCSCEEEBC--S--TT--CCHHHHHHHHHHTTCCCCEESC-----------------------------
T ss_pred -cEecCCCC--cceEEEEEc--C--CC--CCHHHHHHHHHHCCcccccccc-----------------------------
Confidence 222 2221 112233333 1 11 2344444444456987521100
Q ss_pred cccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 544 NNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 544 ~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.....+.+|+|++.++|.+||+++++.|++++++
T Consensus 407 ------~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 407 ------PLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp ------STTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ------ccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 0011368999999999999999999999998865
No 74
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.78 E-value=1.6e-17 Score=171.58 Aligned_cols=296 Identities=14% Similarity=0.149 Sum_probs=196.0
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (603)
Q Consensus 107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna 185 (603)
++.|+||.+... ++++.+++++.+..... ..|. .....+.|++|++++|+
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~--------------------------~~y~---~~~~~~lr~~la~~~~~ 66 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARI--------------------------NRYP---FDAEPRVMRKLAEHFSC 66 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGT--------------------------TSCC---TTHHHHHHHHHHHHHTS
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhh--------------------------ccCC---CCchHHHHHHHHHHhCc
Confidence 457999998655 46788888876542210 0011 12356899999999999
Q ss_pred CCCcEEEeccCc--------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454 186 SENDYVYDYESE--------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG 245 (603)
Q Consensus 186 ~~~e~vf~~es~--------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~ 245 (603)
++++++++.... +.......++..|+++..+++++ ++.++.++|++. .+++
T Consensus 67 ~~~~i~~t~G~~~~l~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~--------~~~~ 137 (337)
T 3p1t_A 67 PEDNLMLVRGIDECFDRISAEFSSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD-DLLLDPNDLAQV--------SRDD 137 (337)
T ss_dssp CGGGEEEESHHHHHHHHHHHHSTTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT-TSSBCHHHHTTC--------CTTE
T ss_pred CHHHEEEeCCHHHHHHHHHHhcCCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHhh--------cCCC
Confidence 999998864321 12223345566799999998874 678898888764 2478
Q ss_pred EEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc--CCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 246 LFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL--GPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~--~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
+++++..+|.||.++|++.+ ++++++++ +++|.++. .+. ....+...+.|+++.|++|+||.+..++|++++++
T Consensus 138 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~--~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~ 214 (337)
T 3p1t_A 138 CVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSF--RARGLAYGENELVFRSFSKSYGLAGLRLGALFGPS 214 (337)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSC--SSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCH
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccc--cccccccCCCEEEEeeCchhccCcchheEEEEeCH
Confidence 99999999999999999965 58899998 55688754 333 23334445678999999999983233458888766
Q ss_pred CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454 323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE 402 (603)
Q Consensus 323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~ 402 (603)
+.++.+... ...++.+..+..++.
T Consensus 215 ~~~~~l~~~-------------------------------------~~~~~~~~~~~~a~~------------------- 238 (337)
T 3p1t_A 215 ELIAAMKRK-------------------------------------QWFCNVGTLDLHALE------------------- 238 (337)
T ss_dssp HHHHHHHTT-------------------------------------SCTTCSCHHHHHHHH-------------------
T ss_pred HHHHHHHhh-------------------------------------cCCCCCCHHHHHHHH-------------------
Confidence 554333211 012334444433322
Q ss_pred hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454 403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA 482 (603)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs 482 (603)
.+++... .+....++.+..+++|.+.|.++ | ++++.| .++.+.
T Consensus 239 ---------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~-----~~~~~~ 281 (337)
T 3p1t_A 239 ---------------------AALDNDR--AREAHIAKTLAQRRRVADALRGL------G---YRVASS-----EANFVL 281 (337)
T ss_dssp ---------------------HHHTCHH--HHHHHHHHHHHHHHHHHHHHHHT------T---CCBCCC-----SSSEEE
T ss_pred ---------------------HHhCCHH--HHHHHHHHHHHHHHHHHHHHHHC------c---CEECCC-----CCeEEE
Confidence 2332211 13455556667788888899875 2 333333 356777
Q ss_pred EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454 483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG 562 (603)
Q Consensus 483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg 562 (603)
|.+.+ + ..+.+++.++||.++.|..|.. .+.||+|++
T Consensus 282 ~~~~~--~-----~~~~~~l~~~gi~v~~g~~~~~------------------------------------~~~iRis~~ 318 (337)
T 3p1t_A 282 VENAA--G-----ERTLRFLRERGIQVKDAGQFGL------------------------------------HHHIRISIG 318 (337)
T ss_dssp EECTT--T-----HHHHHHHHHTTEECEEGGGGTC------------------------------------CSEEEEECC
T ss_pred EEcCC--H-----HHHHHHHHHCCeEEEECccCCC------------------------------------CCeEEEecC
Confidence 66543 2 3456667788999998866521 158999988
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 007454 563 YLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 563 ~~tt~eDVd~l~~~l~~~l~ 582 (603)
+.+|+++|+++|++++.
T Consensus 319 ---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 319 ---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp ---CHHHHHHHHHHHHHHTC
T ss_pred ---CHHHHHHHHHHHHHHhh
Confidence 79999999999998764
No 75
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.78 E-value=1.8e-18 Score=182.15 Aligned_cols=298 Identities=13% Similarity=0.082 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEecc-CchH----------------------HHHHHHHHHcCCEEEEEeccCCccccC
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYE-SEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
...++.|++|++++|++ +.+|... ++++ ......++..|+++..++++..++.++
T Consensus 36 ~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 113 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNID 113 (373)
T ss_dssp HHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEEC
T ss_pred chHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcC
Confidence 45678999999999985 5544311 1111 112334556799999998875567889
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC--CcEEEEc
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR--PDFLICS 303 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~--~Dflv~S 303 (603)
.++|+++|.. ++++|+ .+|+||...|++.+ ++|+++|+++++|++|..|. .++...++ +|++++|
T Consensus 114 ~~~l~~~l~~------~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~~~~d~~~~S 181 (373)
T 3frk_A 114 PSLIESAITE------KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGS---LYKGMKVGSLGDAAGFS 181 (373)
T ss_dssp GGGTGGGCCT------TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTC---EETTEETTSSSSEEEEE
T ss_pred HHHHHHhcCC------CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCC---EECCEeccccccEEEEe
Confidence 9999888753 578777 57899999999966 58999999999999999886 25555555 8999999
Q ss_pred cc--ccCCCCCCceEEEEE-eCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454 304 FY--QIFGENPSGFGCLFV-KKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP 379 (603)
Q Consensus 304 ~h--K~fG~~P~G~G~L~v-kk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi 379 (603)
|+ |++| |.|.|++++ ++. ..+.+++...+|... . + . . .+.|.. + .+
T Consensus 182 ~~~~K~l~--~~g~gg~~~~~~~~~~~~~~~~~~~g~~~------~-~----------~-------~--~~~g~~-~-~~ 231 (373)
T 3frk_A 182 FYPAKNLG--SLGDGGAVVTNDKDLAEKIKALSNYGSEK------K-Y----------H-------H--IYKGFN-S-RL 231 (373)
T ss_dssp CCTTSSSC--CSSSCEEEEESCHHHHHHHHHHHBTTCSB------T-T----------B-------C--CSCCCB-C-CC
T ss_pred CcCCCccC--ccceeEEEEeCCHHHHHHHHHHHhcCccc------C-C----------c-------c--cccccc-C-CC
Confidence 55 9999 545454444 433 333334322223210 0 0 0 0 122321 1 11
Q ss_pred hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454 380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN 459 (603)
Q Consensus 380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~ 459 (603)
.++. +++......+++.+.++.+.+.+++.+.|.++
T Consensus 232 ~~~~----------------------------------------aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 267 (373)
T 3frk_A 232 DELQ----------------------------------------AGFLRVKLKYLDKWNEERRKIAQKYIAGINNP---- 267 (373)
T ss_dssp CHHH----------------------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCT----
T ss_pred CHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----
Confidence 1222 34444433467888899999999999998765
Q ss_pred CCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc----ccCccCCchhhhhhHHHHHhhh
Q 007454 460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS----LHHIWFSDKYQKEKDNVLEKTD 535 (603)
Q Consensus 460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~----~C~~~~~~~~~~~~~~~l~~~~ 535 (603)
+ +++.++.. ......+.|.+...+ ...+.+.+.++||.++.++ +|.+..... .
T Consensus 268 ----~-~~~~~~~~-~~~~~~~~~~~~~~~-----~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~------------~ 324 (373)
T 3frk_A 268 ----N-VIIPVEAD-YAKHVWYTFVIRSEK-----RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDL------------G 324 (373)
T ss_dssp ----T-EECCCCCT-TEECCCSSEEEEESS-----HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGG------------C
T ss_pred ----c-eEeccCCC-CCceeeEEEEEEeCC-----HHHHHHHHHHCCCCcccCcCCccccChHHHhc------------C
Confidence 3 55543321 123444556655432 3456666667799999765 343321110 0
Q ss_pred cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+... ..... .....+.||+|++.++|.+||+++++.|++..++
T Consensus 325 -~~~~-~~~~~---~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 325 -FKTG-NFPIA---EKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp -CCTT-SSHHH---HHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred -CCCC-CCHHH---HHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 0000 00000 0111268999999999999999999999877544
No 76
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.77 E-value=1.3e-17 Score=174.85 Aligned_cols=305 Identities=10% Similarity=0.049 Sum_probs=200.7
Q ss_pred CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (603)
Q Consensus 107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna 185 (603)
++.++|+.+...+ .++.+++++.+.+... ....|+. ....+.|++|++++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------------------~~~~y~~---~~~~~l~~~la~~~g~ 82 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEV------------------------ALNRYPV---PSSEALRAKLKEVMQV 82 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHH------------------------HTTCSCC---CCHHHHHHHHHHHHTC
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhh------------------------hhhcCCC---CcHHHHHHHHHHHhCC
Confidence 4568888776543 5778888876543210 0000111 0135899999999999
Q ss_pred -CCCcEEEeccC-chHHHH---------------------HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454 186 -SENDYVYDYES-EAVEAM---------------------IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 242 (603)
Q Consensus 186 -~~~e~vf~~es-~sV~~~---------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~ 242 (603)
++++++|+... +++..+ ...++..|+++..+++++ ++.++.++|++.|...
T Consensus 83 ~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~----- 156 (367)
T 3euc_A 83 PAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA-DFTLDRGAMLAAMAEH----- 156 (367)
T ss_dssp CTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT-TSCCCHHHHHHHHHHH-----
T ss_pred CCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC-CCCCCHHHHHHHhhcc-----
Confidence 67788775322 122211 233556788999999874 7789999999999752
Q ss_pred CeeEEEEeCccccccccccHHHH----HHHHhC--CcEEEEeccccCC--CCCCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454 243 QRGLFVFPLHSRMTGARYPYLWM----RIAQEN--DWHILIDACALGP--KDMDSFGLSLVRPDFLICSFYQIFGENPSG 314 (603)
Q Consensus 243 ~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~--g~~vlvDAaq~~~--~~m~~ldls~~~~Dflv~S~hK~fG~~P~G 314 (603)
++++|.+++.+|.||.++|.+.+ ++|+++ |+++++|.++..- .. ..-.+...+.++++.|++|+ |.+..+
T Consensus 157 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~-~~~G~r 234 (367)
T 3euc_A 157 QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKL-GLAGIR 234 (367)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCT-TSCSCC
T ss_pred CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhh-cccccC
Confidence 57899999999999999987633 357889 9999999986521 11 01123445677999999999 632234
Q ss_pred eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccch
Q 007454 315 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 394 (603)
Q Consensus 315 ~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~ 394 (603)
+|+++++++.++.+... ....+.|..+..++.
T Consensus 235 ~G~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~----------- 266 (367)
T 3euc_A 235 LGYVAGDPQWLEQLDKV-------------------------------------RPPYNVNVLTEATAL----------- 266 (367)
T ss_dssp EEEEEECHHHHHHHGGG-------------------------------------CCSSCCCHHHHHHHH-----------
T ss_pred ceeeeeCHHHHHHHHHh-------------------------------------CCCCCCCHHHHHHHH-----------
Confidence 78888876554333210 011233444433322
Q ss_pred hHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC
Q 007454 395 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 474 (603)
Q Consensus 395 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~ 474 (603)
.+++.. -.++...++.+.++++|.+.|.+++ | ++++.+
T Consensus 267 -----------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~-----g---~~~~~~--- 304 (367)
T 3euc_A 267 -----------------------------FALEHV--AVLDEQAAQLRAERSRVAEGMAAHG-----G---VTVFPS--- 304 (367)
T ss_dssp -----------------------------HHHTTH--HHHHHHHHHHHHHHHHHHHHHHTST-----T---CEECCC---
T ss_pred -----------------------------HHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCC-----C---cEECCC---
Confidence 344431 1357778889999999999998763 2 555432
Q ss_pred CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454 475 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 554 (603)
Q Consensus 475 ~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 554 (603)
.+..+.+.++ +...+.+.+.++||.++.|..|.. ...
T Consensus 305 --~~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~~~~~----------------------------------~~~ 341 (367)
T 3euc_A 305 --AANFLLARVP-------DAAQTFDRLLARKVLIKNVSKMHP----------------------------------LLA 341 (367)
T ss_dssp --SSSEEEEECS-------CHHHHHHHHHTTTEECEECGGGCG----------------------------------GGT
T ss_pred --CCeEEEEECC-------CHHHHHHHHHHCCeEEEECCccCC----------------------------------CCC
Confidence 4667777775 233455556778999998877631 112
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 555 TVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 555 g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
+.||+|++ |.+|++++++.|++++.
T Consensus 342 ~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 342 NCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp TEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 69999987 99999999999998764
No 77
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.77 E-value=4.1e-17 Score=171.82 Aligned_cols=324 Identities=9% Similarity=0.070 Sum_probs=208.7
Q ss_pred HHHHHHhhccCcCCCCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454 93 IDQIRAKEYYQLSLSNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL 171 (603)
Q Consensus 93 vd~iR~~efp~L~~~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~ 171 (603)
.|...+ +|.. .+.+.|..+... +.++.+++++.+.+... .+.|+....++
T Consensus 22 ~d~~~~-~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------------------------~~~y~~~~~~~ 72 (391)
T 4dq6_A 22 WSEMEK-KYGT---NDLLPMWVADMDFKAAPCIIDSLKNRLEQE-------------------------IYGYTTRPDSY 72 (391)
T ss_dssp HHCHHH-HHSC---SCSEECCSSSCSSCCCHHHHHHHHHHHTTC-------------------------CCCCBCCCHHH
T ss_pred eeeccc-ccCC---CCceeccccCCCCCCCHHHHHHHHHHHhCC-------------------------CCCCCCCCHHH
Confidence 344443 4641 456888877655 45688888877643210 00011112467
Q ss_pred HHHHHHHHHHHcC--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEecc-CCcc--c
Q 007454 172 ESAMKKRIMDFLN--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFS-WPRL--R 224 (603)
Q Consensus 172 ~~~aR~~Ia~~ln--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~-~~~g--~ 224 (603)
.+++++.+++++| +++++++++... .+.......++..|+++..++++ |..+ .
T Consensus 73 ~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 152 (391)
T 4dq6_A 73 NESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYI 152 (391)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEE
T ss_pred HHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceE
Confidence 7889999999999 778888775321 11222334556779999998887 4333 5
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCC
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDACALG----PKDMDSFGLSLVR 296 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~ 296 (603)
++.++|++.|. + ++++++++.+|.||.++|.+. + ++|+++|+++++|.++.. ++ ...++..+.
T Consensus 153 ~d~~~l~~~l~------~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~ 223 (391)
T 4dq6_A 153 MDYEDIENKIK------D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASIS 223 (391)
T ss_dssp CCHHHHHHHCT------T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSC
T ss_pred eeHHHHHHHhh------c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcC
Confidence 89999999885 2 899999999999999977643 3 368999999999999875 33 234444454
Q ss_pred Cc-----EEEEcccccCCCCCCc--eEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccc
Q 007454 297 PD-----FLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 368 (603)
Q Consensus 297 ~D-----flv~S~hK~fG~~P~G--~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 368 (603)
+| +++.|++|+|| +.| +|++++++ .+.+.+.... ..
T Consensus 224 ~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~~--------------------------------~~-- 267 (391)
T 4dq6_A 224 KEFEKNTITCMAPTKTFN--IAGLQSSYVVLPDEKDYKLLDDAF--------------------------------TR-- 267 (391)
T ss_dssp HHHHHTEEEEECSHHHHT--CGGGCCEEEECCSHHHHHHHHHHH--------------------------------HH--
T ss_pred ccccCcEEEEEechhhcc--CcccceEEEEeCCHHHHHHHHHHH--------------------------------Hh--
Confidence 44 89999999998 335 78887765 4433222100 00
Q ss_pred cccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007454 369 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 448 (603)
Q Consensus 369 ~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L 448 (603)
...+++|..+..++. ++++.... .++.+.++.+.+.++|
T Consensus 268 ~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~l 306 (391)
T 4dq6_A 268 IDIKRNNCFSLVATE----------------------------------------ASYNNGES-WLESFLEYLESNIDFA 306 (391)
T ss_dssp TTCCCCCHHHHHHHH----------------------------------------HHHHHCHH-HHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHH----------------------------------------HHHhchHH-HHHHHHHHHHHHHHHH
Confidence 123345555544332 34443211 2677788889999999
Q ss_pred HHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhh
Q 007454 449 VNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKE 526 (603)
Q Consensus 449 ~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~ 526 (603)
.+.|.+ ++ .++++.|. .+.++.+.++... ++.. +.++|.+++||.++.|..|..
T Consensus 307 ~~~l~~~~~--------~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~--------- 362 (391)
T 4dq6_A 307 IKYINENMP--------KLKVRKPE----GTYLLWVDFSALG---LSDEELESILVQKGKVALNQGNSFGI--------- 362 (391)
T ss_dssp HHHHHHHCT--------TSEECCCS----BSSEEEEECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCT---------
T ss_pred HHHHHhhCC--------CCEecCCC----ccEEEEEEhhhcC---CCHHHHHHHHHHhCCEEeeCchhhCC---------
Confidence 999987 42 25666553 2334446776421 2233 455565555999999876632
Q ss_pred hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+.+.+|+|++ ++.|||+++++.|++.++
T Consensus 363 -------------------------~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 363 -------------------------GGSGYQRINLA--CPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp -------------------------TCTTEEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred -------------------------CCCCeEEEEEc--CCHHHHHHHHHHHHHHhC
Confidence 11368999999 799999999999988763
No 78
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.76 E-value=3.4e-17 Score=173.78 Aligned_cols=274 Identities=13% Similarity=0.119 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWPRLRINS 227 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~ 227 (603)
+..+++++.+++++|+ ++++++... +++ ......++..|+++..++. ++.
T Consensus 88 ~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~------~d~ 159 (398)
T 3a2b_A 88 DIHVELEEKLSAYVGK--EAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH------NNM 159 (398)
T ss_dssp HHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT------TCH
T ss_pred HHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC------CCH
Confidence 5678899999999997 466664321 122 2223344556777776654 478
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC-CCCCCCC-CCC----CCcEE
Q 007454 228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK-DMDSFGL-SLV----RPDFL 300 (603)
Q Consensus 228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~-~m~~ldl-s~~----~~Dfl 300 (603)
++|++.|...+ ..++++|.++..+|.||.++|++.+ ++|+++|+++++|.++..+. +-...++ +.+ ++|++
T Consensus 160 ~~l~~~l~~~~--~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~ 237 (398)
T 3a2b_A 160 EDLRAKLSRLP--EDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLI 237 (398)
T ss_dssp HHHHHHHHTSC--SSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEE
T ss_pred HHHHHHHHhhc--cCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEE
Confidence 99999987421 1158899999999999999999865 58999999999999986442 0011222 111 47999
Q ss_pred EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454 301 ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM 380 (603)
Q Consensus 301 v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~ 380 (603)
+.|+||+|| |.| |++++++++++.+.+.. .. + ...++++....+
T Consensus 238 ~~s~sK~~~--~~G-G~~~~~~~~~~~l~~~~-----------~~-~---------------------~~~~~~~~~~~a 281 (398)
T 3a2b_A 238 MGTFSKSLA--SLG-GFVAGDADVIDFLKHNA-----------RS-V---------------------MFSASMTPASVA 281 (398)
T ss_dssp EEESSSTTC--SSC-EEEEECHHHHHHHHHHC-----------HH-H---------------------HSSBCCCHHHHH
T ss_pred Eeccccccc--CCC-cEEEeCHHHHHHHHHhc-----------cc-c---------------------eecCCCCHHHHH
Confidence 999999999 788 99999876654333200 00 0 112333444332
Q ss_pred hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454 381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT 460 (603)
Q Consensus 381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~ 460 (603)
++. .+++..+. ++.+.++.+.+.++|.+.|.++
T Consensus 282 ~~~----------------------------------------~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~----- 314 (398)
T 3a2b_A 282 STL----------------------------------------KALEIIQN--EPEHIEKLWKNTDYAKAQLLDH----- 314 (398)
T ss_dssp HHH----------------------------------------HHHHHHHH--CTHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHH----------------------------------------HHHHHHhh--CHHHHHHHHHHHHHHHHHHHhc-----
Confidence 221 35555432 4577788889999999999876
Q ss_pred CCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454 461 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK 539 (603)
Q Consensus 461 ~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~ 539 (603)
| ++++.| .+.++.+.+++ + ++. ++.++|.+ +||.++.|..|...
T Consensus 315 -g---~~~~~~-----~g~~~~~~~~~--~--~~~~~l~~~l~~-~gi~v~~~~~~~~~--------------------- 359 (398)
T 3a2b_A 315 -G---FDLGAT-----ESPILPIFIRS--N--EKTFWVTKMLQD-DGVFVNPVVSPAVP--------------------- 359 (398)
T ss_dssp -T---CCBCSC-----CSSEEEEECCC--H--HHHHHHHHHHHH-TTEECEEECTTTSC---------------------
T ss_pred -C---CCcCCC-----CCCEEEEEcCC--H--HHHHHHHHHHHH-CCcEEEeeCCCCCC---------------------
Confidence 2 233333 36788888753 1 122 34455554 59999988665321
Q ss_pred cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+.||+|++.++|.+|++++++.|++++.+
T Consensus 360 ------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 360 ------------AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp ------------GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 11258999999999999999999999998754
No 79
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.76 E-value=6.5e-17 Score=171.42 Aligned_cols=307 Identities=13% Similarity=0.130 Sum_probs=201.9
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|.++. ++.++.+++++.+.+... .+.++. + .....++.+++++
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la 97 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL--------------------MAMPQT--L---PTPMRGEFYRTLT 97 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------CCCCTT--S---CCHHHHHHHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhC--------------------CCCccc--c---CCHHHHHHHHHHH
Confidence 45789999654 567888888877643210 111111 1 2356779999999
Q ss_pred HHcCCCCCcEEEeccC-chHHHHHHHHH--HcCCEEEEEeccCCc---------c-------------------ccCHHH
Q 007454 181 DFLNISENDYVYDYES-EAVEAMIRTSE--KRGARVMSAEFSWPR---------L-------------------RINSEK 229 (603)
Q Consensus 181 ~~lna~~~e~vf~~es-~sV~~~~~~a~--~~Ga~V~~~~~~~~~---------g-------------------~i~~~~ 229 (603)
+++|+++++++++... +++..++..+. ..|.+|...+..++. + ..+.++
T Consensus 98 ~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~ 177 (395)
T 1vef_A 98 AILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEA 177 (395)
T ss_dssp HTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHH
T ss_pred HhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHH
Confidence 9999888888887543 45555454443 456777765433210 0 136788
Q ss_pred HHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcEEE
Q 007454 230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDFLI 301 (603)
Q Consensus 230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Dflv 301 (603)
|++.|.. ++++|.+...+|.||.+.| ++.| ++|+++|+++++|.++. .+.. ..++++....+|++
T Consensus 178 l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~- 250 (395)
T 1vef_A 178 LKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL- 250 (395)
T ss_dssp HHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE-
T ss_pred HHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE-
Confidence 8887752 6899999888889999988 8855 58999999999999987 3220 01223334468977
Q ss_pred EcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454 302 CSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS 381 (603)
Q Consensus 302 ~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g 381 (603)
|++|+||. +.++|++++++++++.+.+...++ .-+.|..+.++
T Consensus 251 -s~sK~~~~-g~~~G~~~~~~~~~~~l~~~~~~~-----------------------------------~~~~~~~~~~a 293 (395)
T 1vef_A 251 -TLAKALGG-GVPLGVAVMREEVARSMPKGGHGT-----------------------------------TFGGNPLAMAA 293 (395)
T ss_dssp -EECGGGGT-TSSCEEEEEEHHHHHTSCTTSSCC-----------------------------------SSTTCHHHHHH
T ss_pred -EEcccccC-CCceEEEEehHHHHhhhccCCcCC-----------------------------------CcCCCHHHHHH
Confidence 67999985 677999999987655554310000 01123333322
Q ss_pred hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454 382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE 461 (603)
Q Consensus 382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~ 461 (603)
.. ++++.+.. +.+.++.+.+.++|.+.|.++..
T Consensus 294 ~~----------------------------------------~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~---- 326 (395)
T 1vef_A 294 GV----------------------------------------AAIRYLER---TRLWERAAELGPWFMEKLRAIPS---- 326 (395)
T ss_dssp HH----------------------------------------HHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC----
T ss_pred HH----------------------------------------HHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc----
Confidence 22 46666543 35677889999999999988632
Q ss_pred CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccc
Q 007454 462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 541 (603)
Q Consensus 462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~ 541 (603)
+.+... ...+.++.|.+++. ...+.++|.+++||.++.|
T Consensus 327 --~~~~~~-----~~~g~~~~~~~~~~-----~~~l~~~l~~~~gi~v~~~----------------------------- 365 (395)
T 1vef_A 327 --PKIREV-----RGMGLMVGLELKEK-----AAPYIARLEKEHRVLALQA----------------------------- 365 (395)
T ss_dssp --TTEEEE-----EEETTEEEEEESSC-----SHHHHHHHHHHHCEECEES-----------------------------
T ss_pred --CceEEE-----EEEEEEEEEEEcCh-----HHHHHHHHHHHCCeEEecC-----------------------------
Confidence 323211 12467899988652 2345556653679988743
Q ss_pred cccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 542 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 542 ~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
+.+.||+|+++.+|.+|++++++.|++++
T Consensus 366 -----------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 366 -----------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp -----------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -----------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 01589999999999999999999998875
No 80
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.76 E-value=4.7e-17 Score=170.87 Aligned_cols=300 Identities=13% Similarity=0.145 Sum_probs=194.1
Q ss_pred CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
++..|+|.+++.+ .++.+++++.+.+.. .+++.+. |. .....+.|++|+
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~--------------------~~~~~~~--y~---~~~~~~l~~~la 80 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK--------------------LLHVSNL--YE---NPWQEELAHKLV 80 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHH--------------------CSCCCTT--BC---CHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHh--------------------ccccCcc--cC---CHHHHHHHHHHH
Confidence 5678999986643 678888887654321 0121111 11 123467899999
Q ss_pred HHcCCCCCcEEEeccC-chHHHHHHHH---H---HcC-CEEEEEeccCCc------------------------cc----
Q 007454 181 DFLNISENDYVYDYES-EAVEAMIRTS---E---KRG-ARVMSAEFSWPR------------------------LR---- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~es-~sV~~~~~~a---~---~~G-a~V~~~~~~~~~------------------------g~---- 224 (603)
+++|+ +++++++... +++..++..+ . +.| .+|......++. ..
T Consensus 81 ~~~g~-~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
T 2eh6_A 81 KHFWT-EGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL 159 (375)
T ss_dssp HTSSS-CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT
T ss_pred hhcCC-CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC
Confidence 99999 4677776543 3444444332 2 346 777766543321 01
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCCCCCCCCC--
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDSFGLSLVR-- 296 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~ldls~~~-- 296 (603)
.+.++|++.|. +++++|.+...+|.||.+.| ++.+ ++|+++|+++++|.++. .+..-..+++..++
T Consensus 160 ~d~~~l~~~l~------~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 233 (375)
T 2eh6_A 160 NDIDSVYKLLD------EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLK 233 (375)
T ss_dssp TCHHHHHTTCC------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred chHHHHHHHhc------CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCC
Confidence 36677776664 36899999999999999988 8755 58999999999999987 44310124455555
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454 297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 376 (603)
Q Consensus 297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~ 376 (603)
+|++++| |+||. +.++|++++++++++.+.+...++ ..++.++
T Consensus 234 ~d~~s~S--K~~~~-g~~~G~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~ 276 (375)
T 2eh6_A 234 PDVIALA--KGLGG-GVPIGAILAREEVAQSFTPGSHGS----------------------------------TFGGNPL 276 (375)
T ss_dssp CSEEEEC--GGGGT-TSCCEEEEEEHHHHTTCCTTSCCC----------------------------------SSTTCHH
T ss_pred CCEEEEc--ccccC-CCCeEEEEEcHHHHhhhcCCCCCC----------------------------------CCCCCHH
Confidence 9999888 88874 778999999987665555321111 0122222
Q ss_pred hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454 377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ 456 (603)
Q Consensus 377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~ 456 (603)
...++. ++++... .+.++.+.+.++|.+.|.++.
T Consensus 277 ~~~~~~-----------------------------------------~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~ 310 (375)
T 2eh6_A 277 ACRAGT-----------------------------------------VVVDEVE-----KLLPHVREVGNYFKEKLKELG 310 (375)
T ss_dssp HHHHHH-----------------------------------------HHHHHHH-----HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-----------------------------------------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 222111 3555432 667888899999999998763
Q ss_pred CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454 457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 536 (603)
Q Consensus 457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~ 536 (603)
...+ ...+.++.+.+++ + ..++.++|. ++||.++.|
T Consensus 311 ------~~~~--------~~~g~~~~~~~~~-~----~~~~~~~l~-~~gi~~~~~------------------------ 346 (375)
T 2eh6_A 311 ------KGKV--------KGRGLMLGLELER-E----CKDYVLKAL-EKGLLINCT------------------------ 346 (375)
T ss_dssp ------SSEE--------EEETTEEEEECSS-C----CHHHHHHHH-HTTEECEEE------------------------
T ss_pred ------cCCc--------eEEEEEEEEEEcC-c----HHHHHHHHH-HCCCEEecC------------------------
Confidence 1111 1246788888764 2 234455555 589987642
Q ss_pred ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
+.+.||+|+++.+|.+|++++++.|+++|
T Consensus 347 ----------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 347 ----------------AGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp ----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred ----------------CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 01589999999999999999999998764
No 81
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.75 E-value=2.2e-16 Score=170.47 Aligned_cols=137 Identities=9% Similarity=0.011 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchHH-HHHHHHHHcCCEEEEE-eccCC
Q 007454 168 ESGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAVE-AMIRTSEKRGARVMSA-EFSWP 221 (603)
Q Consensus 168 ~~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV~-~~~~~a~~~Ga~V~~~-~~~~~ 221 (603)
.....++.|++|++++|++ +.++|.. ++.++. .+...+++.|+++..+ +.+
T Consensus 56 ~~~~~~~l~~~la~~~g~~-~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 132 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEGGK-AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-- 132 (421)
T ss_dssp BCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC--
T ss_pred CChHHHHHHHHHHHHhCCC-ceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC--
Confidence 3456789999999999986 3454432 122221 1222246678888877 553
Q ss_pred ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc-cCCCCCCCCCCCCCCCcE
Q 007454 222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA-LGPKDMDSFGLSLVRPDF 299 (603)
Q Consensus 222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq-~~~~~m~~ldls~~~~Df 299 (603)
+.++|+++|.. +|++|++.+.+|+||.++|++.| ++|+++|+++++|++| ..|....++ .+++|+
T Consensus 133 ----d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~---~~~~Di 199 (421)
T 2ctz_A 133 ----RPEEFLALTDE------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL---AWGAAL 199 (421)
T ss_dssp ----CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG---GGTCSE
T ss_pred ----CHHHHHHhhcc------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCcc---ccCCeE
Confidence 68899988863 69999999999999999999866 5899999999999999 777521233 457999
Q ss_pred EEEcccccCCCCCC-ceEEEEEe
Q 007454 300 LICSFYQIFGENPS-GFGCLFVK 321 (603)
Q Consensus 300 lv~S~hK~fG~~P~-G~G~L~vk 321 (603)
+++|+||+||+ |. ++|++++.
T Consensus 200 ~~~s~~K~l~~-~g~~~G~~~~~ 221 (421)
T 2ctz_A 200 VTHSLTKWVGG-HGAVIAGAIVD 221 (421)
T ss_dssp EEEETTTTTTC-SSCCCCEEEEE
T ss_pred EEECCcccccC-CCCcEEEEEEe
Confidence 99999999986 54 37988886
No 82
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.75 E-value=5.4e-17 Score=168.49 Aligned_cols=308 Identities=13% Similarity=0.054 Sum_probs=195.3
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
+..+||++...++.++.+++++.+.+... ...|+ .....+++|+.+++++| +
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~~-------------------------~~~~~--~~~~~~~l~~~la~~~g-~ 58 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSGQ-------------------------AGPYG--TDELTAQVKRKFCEIFE-R 58 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSSC-------------------------CCSTT--CSHHHHHHHHHHHHHHT-S
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccCc-------------------------ccccc--cchHHHHHHHHHHHHhC-C
Confidence 45789999888888999999987642100 00111 12466789999999999 5
Q ss_pred CCcEEEecc----------------------CchHHHHHHH--HHHc--CCEEEEEeccCCccccCHHHHHH-HHhhcC-
Q 007454 187 ENDYVYDYE----------------------SEAVEAMIRT--SEKR--GARVMSAEFSWPRLRINSEKLRK-MVVSKG- 238 (603)
Q Consensus 187 ~~e~vf~~e----------------------s~sV~~~~~~--a~~~--Ga~V~~~~~~~~~g~i~~~~L~~-~l~~~~- 238 (603)
+.+++|+.. .......... ++.. |+++..++.+ ++.++.++|++ +|....
T Consensus 59 ~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~i~~~~~ 136 (356)
T 1v72_A 59 DVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGD 136 (356)
T ss_dssp CCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTC
T ss_pred CCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCeEcHHHHHHHhhhcchh
Confidence 556766421 1111111122 3444 8999888875 47889999999 886310
Q ss_pred CCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEeccccC------CCCCCCCCCCCCCCcEEEEcccccC
Q 007454 239 KKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALG------PKDMDSFGLSLVRPDFLICSFYQIF 308 (603)
Q Consensus 239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~------~~~m~~ldls~~~~Dflv~S~hK~f 308 (603)
...+++++|.+...+| ||.++|.+ .+ ++|+++|+++++|+++.. +..+..+++ ..++|++++|+||+
T Consensus 137 ~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~s~sK~- 213 (356)
T 1v72_A 137 VHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTW-KAGVDALSFGATKN- 213 (356)
T ss_dssp TTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTG-GGTCCEEEECCGGG-
T ss_pred hccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhh-hhcCCEEEEecccC-
Confidence 0112588988888766 99977654 33 478999999999998752 221111111 13789999999999
Q ss_pred CCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcC
Q 007454 309 GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG 388 (603)
Q Consensus 309 G~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~ 388 (603)
|. |.|.|+++.++++++.+.... ...|+.+..+.++..
T Consensus 214 g~-~~G~g~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~----- 251 (356)
T 1v72_A 214 GV-LAAEAIVLFNTSLATEMSYRR------------------------------------KRAGHLSSKMRFLSA----- 251 (356)
T ss_dssp TC-SSCEEEEESSGGGHHHHHHHH------------------------------------HHTTCCCSSTHHHHH-----
T ss_pred CC-cCccEEEEECHHHHhhHHHHh------------------------------------hccCchhhhHHHHHH-----
Confidence 65 889999988776654332100 001111111111111
Q ss_pred ccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 007454 389 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI 468 (603)
Q Consensus 389 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~I 468 (603)
.+++.+..-.+..+.++.+.+.++|.+.|.+++ .+++
T Consensus 252 -----------------------------------~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--------g~~~ 288 (356)
T 1v72_A 252 -----------------------------------QIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG--------GVEV 288 (356)
T ss_dssp -----------------------------------HHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCT--------TEEE
T ss_pred -----------------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC--------CcEE
Confidence 123333221244566777889999999998753 2677
Q ss_pred eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccccc
Q 007454 469 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD 548 (603)
Q Consensus 469 ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 548 (603)
+.|. .++++.+.+++ +++++| .++||.++.|.+
T Consensus 289 ~~~~----~~~~~~~~~~~--------~~~~~l-~~~gi~v~~g~~---------------------------------- 321 (356)
T 1v72_A 289 LGGT----EANILFCRLDS--------AMIDAL-LKAGFGFYHDRW---------------------------------- 321 (356)
T ss_dssp ESCC----CSSEEEEEECH--------HHHHHH-HHTTCBCBCSSS----------------------------------
T ss_pred ccCC----CccEEEEEcCH--------HHHHHH-HhcCeEEecccc----------------------------------
Confidence 6652 46777777642 345555 567998886631
Q ss_pred CCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 549 KANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 549 ~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+ .+.+|+|+++.+|.+|++++++.|+++++.
T Consensus 322 -~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 322 -G---PNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp -S---TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred -C---CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 1 258999999999999999999999988754
No 83
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.75 E-value=6e-17 Score=174.54 Aligned_cols=321 Identities=9% Similarity=0.016 Sum_probs=203.4
Q ss_pred CceeeecCCCC-----CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454 108 NHTCLDYFGIG-----LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF 182 (603)
Q Consensus 108 ~~vYLDyaa~t-----l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ 182 (603)
+.|+|+.+... +.++.+++++.+.+...... .+.. . ....+.|+.|+++
T Consensus 55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~---------------~y~~--~---------~g~~~lr~~la~~ 108 (427)
T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN---------------GYAP--S---------IGFLSSREEIASY 108 (427)
T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS---------------SCCC--T---------TCCHHHHHHHHHH
T ss_pred CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC---------------CCCC--C---------CCcHHHHHHHHHH
Confidence 45889877743 67888888876543210000 0000 0 1134789999999
Q ss_pred cC-----CCCCcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccC-CccccCHHHHHHHH
Q 007454 183 LN-----ISENDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSW-PRLRINSEKLRKMV 234 (603)
Q Consensus 183 ln-----a~~~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l 234 (603)
++ +++++++++... +++.. ....++..|+++..++.++ .+..++.++|++.|
T Consensus 109 ~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 188 (427)
T 3dyd_A 109 YHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLI 188 (427)
T ss_dssp HCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSC
T ss_pred HhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHh
Confidence 99 778888776432 12222 2344566788888887753 23467899998887
Q ss_pred hhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCCCc---EEEEc
Q 007454 235 VSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSLVRPD---FLICS 303 (603)
Q Consensus 235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~~D---flv~S 303 (603)
.. +++++++.+.+|.||..+| ++.+ ++|+++|+++++|.++.. ++ ....+..+..| +++.|
T Consensus 189 ~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~~~~~~~vi~~~S 260 (427)
T 3dyd_A 189 DE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLATLSTDVPILSCGG 260 (427)
T ss_dssp CT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGGGCSSCCEEEEEE
T ss_pred cc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHHhCCCCcEEEEee
Confidence 53 5899999999999999999 6644 478999999999998765 33 23344444444 66779
Q ss_pred ccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454 304 FYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS 381 (603)
Q Consensus 304 ~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g 381 (603)
++|.|| ..| +|++++++... .+.+...... . ... ....++|..+..+
T Consensus 261 ~sK~~~--~~G~riG~~~~~~~~~-~~~~~i~~~l---------------------~------~~~-~~~~~~~~~~~~a 309 (427)
T 3dyd_A 261 LAKRWL--VPGWRLGWILIHDRRD-IFGNEIRDGL---------------------V------KLS-QRILGPCTIVQGA 309 (427)
T ss_dssp STTTSS--CGGGCCEEEEEECSTT-SSHHHHHHHH---------------------H------HHH-HHHCCSCHHHHHH
T ss_pred ccccCC--CcCcceEEEEecCcch-hhHHHHHHHH---------------------H------HHH-hccCCCCHHHHHH
Confidence 999998 447 79999886421 1111000000 0 000 0123444444433
Q ss_pred hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454 382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE 461 (603)
Q Consensus 382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~ 461 (603)
+. ++++......++...++++.++++|.+.|.+++
T Consensus 310 ~~----------------------------------------~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----- 344 (427)
T 3dyd_A 310 LK----------------------------------------SILCRTPGEFYHNTLSFLKSNADLCYGALAAIP----- 344 (427)
T ss_dssp HH----------------------------------------HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHST-----
T ss_pred HH----------------------------------------HHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 32 344321122356777888889999999998763
Q ss_pred CCceEEEeCCCCCCCCCCEEEEEEccC--CCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454 462 GNALVKIYGPKIRFDRGPALAFNVFDW--KREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK 539 (603)
Q Consensus 462 g~plv~Iygp~~~~~rg~ivsFnv~~~--~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~ 539 (603)
.++++.|. .+..+.+.+... ....-..+++++|++++||.++.|..|..
T Consensus 345 ---g~~~~~p~----~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~---------------------- 395 (427)
T 3dyd_A 345 ---GLRPVRPS----GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY---------------------- 395 (427)
T ss_dssp ---TEEEECCS----BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC----------------------
T ss_pred ---CceecCCC----eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC----------------------
Confidence 26777653 355666666521 00011235567787889999998865521
Q ss_pred cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.+|+|++ ++.++|+++++.|++++.+
T Consensus 396 --------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 396 --------------PNFIRVVIT--VPEVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp --------------TTEEEEESC--SCHHHHHHHHHHHHHHHHH
T ss_pred --------------CCeEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 258999997 7999999999999998764
No 84
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.75 E-value=5.2e-17 Score=170.61 Aligned_cols=276 Identities=8% Similarity=0.046 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHcC--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCc--c
Q 007454 170 GLESAMKKRIMDFLN--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPR--L 223 (603)
Q Consensus 170 ~~~~~aR~~Ia~~ln--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~--g 223 (603)
++.+++++.+++++| +++++++++... .+.......++..|+++..+++++.+ .
T Consensus 63 ~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 142 (383)
T 3kax_A 63 NIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTY 142 (383)
T ss_dssp THHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEE
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcE
Confidence 566788888888888 677888775321 12223345566789999988886422 3
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC----CCCCCCCCCCCC
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG----PKDMDSFGLSLV 295 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~ 295 (603)
.++.++|++.|. +++++++++..+|.||.++|.+.+ ++|+++|+++++|.++.. ++ ...++..+
T Consensus 143 ~~d~~~l~~~l~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~ 214 (383)
T 3kax_A 143 AIDFEHLEKQFQ------QGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADH--THTPFASL 214 (383)
T ss_dssp ECCHHHHHHHHT------TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGS
T ss_pred EEcHHHHHHHhC------cCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--CceeHhhc
Confidence 489999999994 368899999999999999998644 248999999999998765 32 12333333
Q ss_pred -----CCcEEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccc
Q 007454 296 -----RPDFLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 367 (603)
Q Consensus 296 -----~~Dflv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 367 (603)
+.++++.|++|.|| +.| +|+++++ +++.+.+.... ..
T Consensus 215 ~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~--------------------------------~~- 259 (383)
T 3kax_A 215 SEELAARTITCMAPSKTFN--IAGLQASIIIIPNEKLRQAFTSIQ--------------------------------YR- 259 (383)
T ss_dssp CHHHHTTEEEEECSHHHHT--CGGGCCEEEECCCHHHHHHHHHHH--------------------------------HH-
T ss_pred CccccCcEEEEEEChhhcc--CcchhheEEEeCCHHHHHHHHHHH--------------------------------hh-
Confidence 44599999999998 445 6777763 33332222100 00
Q ss_pred ccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007454 368 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 447 (603)
Q Consensus 368 ~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~ 447 (603)
...+++|..+..++. ++++.... .++.+.++.+.+.++
T Consensus 260 -~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~ 297 (383)
T 3kax_A 260 -QGFHGLNIFAYTAMQ----------------------------------------SAYTECND-WLNEIRFYIEDNAKF 297 (383)
T ss_dssp -TTCCCCCHHHHHHHH----------------------------------------HHTTTCHH-HHHHHHHHHHHHHHH
T ss_pred -cccCCCCHHHHHHHH----------------------------------------HHHHhhHH-HHHHHHHHHHHHHHH
Confidence 112345555544332 23322111 256777888899999
Q ss_pred HHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhh
Q 007454 448 LVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQK 525 (603)
Q Consensus 448 L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~ 525 (603)
|.+.|.+ ++ .++++.|. .+..+.+.++.. | ++. ++.++|++++||.++.|..|...
T Consensus 298 l~~~l~~~~~--------~~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~------- 355 (383)
T 3kax_A 298 ACEYIKDHIP--------TLSVMKPE----GSFLLWIDCSAL-N--LSQDERTKLLEEKGKIIVEPGEKYGLG------- 355 (383)
T ss_dssp HHHHHHHHCT--------TCEECCCS----BSSEEEEECGGG-C--CCHHHHHHHHHHTSCEECEESGGGCTT-------
T ss_pred HHHHHHhhCC--------CceEecCC----ceEEEEEEcccc-C--CCHHHHHHHHHhhCCEEeECchhhcCC-------
Confidence 9999987 43 26666553 233444666542 1 223 34555666899999999776421
Q ss_pred hhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 526 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 526 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
..+.+|+|++ ++.+||+++++.|++++
T Consensus 356 ---------------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 356 ---------------------------GEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp ---------------------------CTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 1368999999 59999999999998876
No 85
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.75 E-value=4.6e-17 Score=173.76 Aligned_cols=268 Identities=15% Similarity=0.121 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHH---------------------cCCEEEEEeccCCccccCHHHH
Q 007454 172 ESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEK---------------------RGARVMSAEFSWPRLRINSEKL 230 (603)
Q Consensus 172 ~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~---------------------~Ga~V~~~~~~~~~g~i~~~~L 230 (603)
.++.++++++++|++. .+++...++++..++..... .|+++..++. .+.++|
T Consensus 106 ~~~l~~~la~~~g~~~-~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l 178 (409)
T 3kki_A 106 KPMIEKRLAKFTGFDE-CLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH------NNCDHL 178 (409)
T ss_dssp SCHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT------TCHHHH
T ss_pred HHHHHHHHHHHhCCCe-EEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC------CCHHHH
Confidence 4578889999999764 45554333333333333223 3444443321 578999
Q ss_pred HHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC--------CCCCCCCCCcEEE
Q 007454 231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD--------SFGLSLVRPDFLI 301 (603)
Q Consensus 231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~--------~ldls~~~~Dflv 301 (603)
++.|..+ ++++|.+...+|.||.+.|++.+ ++|+++|+++++|.++..+. +. .+++. .++|+++
T Consensus 179 e~~l~~~-----~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~-~g~~g~~~~~~~~~~-~~~di~~ 251 (409)
T 3kki_A 179 RMLIQRH-----GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGT-HGPNGAGLLAELGLT-REVHFMT 251 (409)
T ss_dssp HHHHHHH-----CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT-SSGGGCCHHHHHTCG-GGCSEEE
T ss_pred HHHHHhc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccc-cCCCCCcchhhcCCC-CCCCEEE
Confidence 9999752 46899999999999999999855 58999999999999986643 00 12232 3689999
Q ss_pred EcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454 302 CSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS 381 (603)
Q Consensus 302 ~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g 381 (603)
.|++|.|| +. .|+++.+++.++.+.... ..+ .-.++.+...+++
T Consensus 252 ~s~sK~~~--~~-gg~v~~~~~~~~~~~~~~------------~~~---------------------~~~~~~~~~~~aa 295 (409)
T 3kki_A 252 ASLAKTFA--YR-AGAIWCNNEVNRCVPFIS------------YPA---------------------IFSSTLLPYEAAG 295 (409)
T ss_dssp EESSSTTC--SS-CEEEEESSSGGGTHHHHC------------HHH---------------------HHSBCCCHHHHHH
T ss_pred eecchhhC--CC-ceEEEECHHHHHHHHHhC------------cCc---------------------cccCCCcHHHHHH
Confidence 99999999 33 488888877654433100 000 0112233333333
Q ss_pred hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454 382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE 461 (603)
Q Consensus 382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~ 461 (603)
+. ++++.++.. +.+.++.+.+.++|.+.|.++.
T Consensus 296 ~~----------------------------------------aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~g----- 328 (409)
T 3kki_A 296 LE----------------------------------------TTLEIIESA--DNRRQHLDRMARKLRIGLSQLG----- 328 (409)
T ss_dssp HH----------------------------------------HHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred HH----------------------------------------HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcC-----
Confidence 22 467766553 6788888999999999998862
Q ss_pred CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccc
Q 007454 462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 541 (603)
Q Consensus 462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~ 541 (603)
+.+. ..++++.+.+.+.. -...+.++|. ++||.++.++....
T Consensus 329 ----~~~~------~~~~~~~~~~~~~~---~~~~~~~~L~-~~Gv~v~~~~~~~~------------------------ 370 (409)
T 3kki_A 329 ----LTIR------SESQIIGLETGDER---NTEKVRDYLE-SNGVFGSVFCRPAT------------------------ 370 (409)
T ss_dssp ----CCCC------CSSSEEEEEEESHH---HHHHHHHHHH-HTTEECEEECTTSS------------------------
T ss_pred ----CccC------CCCCEEEEEeCCHH---HHHHHHHHHH-HCCceEeeeCCCCc------------------------
Confidence 2222 25788988886521 0112344554 45999876432110
Q ss_pred cccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 542 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 542 ~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.+.||+|++.++|.+||+++++.|+++++.
T Consensus 371 ---------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 371 ---------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ---------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 122369999999999999999999999998754
No 86
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.74 E-value=8.9e-18 Score=182.99 Aligned_cols=262 Identities=12% Similarity=0.040 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccC-Cc----
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSW-PR---- 222 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~-~~---- 222 (603)
..+.++|+.+++ +|++ ++++|+..+ ++ .......+...|+++++++..+ ++
T Consensus 57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~ 134 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNHY 134 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSSE
T ss_pred hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCcC
Confidence 356789999999 9987 566654321 11 1222233445688888888732 22
Q ss_pred cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC-----CCCCCCCC
Q 007454 223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD-----SFGLSLVR 296 (603)
Q Consensus 223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~-----~ldls~~~ 296 (603)
+.++.++| +. ++++++++.+ .|.||.++|++.| ++|+++|+++++|+++.. + . ++++..++
T Consensus 135 ~~~d~~~l---~~------~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~--~~f~~~~~~~~~~g 201 (446)
T 2x3l_A 135 NKVNLSRL---NN------DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-H--FGLQGFPDSTLNYQ 201 (446)
T ss_dssp EEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-T--TTSTTSCCCGGGGT
T ss_pred CCCCHHHH---cC------CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-h--hccCCCCCChHHcC
Confidence 45677766 22 3588899988 6669999999966 589999999999999876 2 1 45555668
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454 297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 376 (603)
Q Consensus 297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~ 376 (603)
+|++++|+||++++ |+|+|+|+++++.++ +.+...++ .. +..+|+++
T Consensus 202 ~Di~~~S~~K~l~~-~~g~g~l~~~~~~i~-~~~~~~~~-----------------------------~~--~~~~s~~~ 248 (446)
T 2x3l_A 202 ADYVVQSFHKTLPA-LTMGSVLYIHKNAPY-RENIIEYL-----------------------------SY--FQTSSPSY 248 (446)
T ss_dssp CSEEEECHHHHSSS-CTTCEEEEEETTCTT-HHHHHHHH-----------------------------HH--HSCSSCCH
T ss_pred CCEEEECCcccccc-ccccEEEEEcCCcCC-HHHHHHHH-----------------------------HH--HcCCCchH
Confidence 99999999995543 889999999988653 22100000 01 35788888
Q ss_pred hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454 377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ 456 (603)
Q Consensus 377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~ 456 (603)
..++++. .+++++...|.+.+.++.+.+.+++.+. .
T Consensus 249 ~~~aal~----------------------------------------~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g-- 284 (446)
T 2x3l_A 249 LIMASLE----------------------------------------SAAQFYKTYDSTLFFAKRAQLIECLENK--G-- 284 (446)
T ss_dssp HHHHHHH----------------------------------------HHHHHHHHCCCHHHHHHHHHHHHHHHHH--T--
T ss_pred HHHHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHc--C--
Confidence 8776665 5778888888887888999999988877 2
Q ss_pred CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEe-eCcccCccCCchhhhhhHHHHHhhh
Q 007454 457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS-YGSLHHIWFSDKYQKEKDNVLEKTD 535 (603)
Q Consensus 457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr-~G~~C~~~~~~~~~~~~~~~l~~~~ 535 (603)
++++++.. +..+.|++++. +...+.+.+.++||.++ .|
T Consensus 285 ---------~~~~~~~~----~~~l~i~~~~~-----~~~~l~~~L~~~GI~v~~~g----------------------- 323 (446)
T 2x3l_A 285 ---------FEMLQVDD----PLKLLIKYEGF-----TGHDIQNWFMNAHIYLELAD----------------------- 323 (446)
T ss_dssp ---------CEEEECSS----TTEEEEECTTS-----CHHHHHHHHHHTTEEESEEC-----------------------
T ss_pred ---------CEECcCCC----CeEEEEEeCCc-----CHHHHHHHHHHCCCEEEecC-----------------------
Confidence 45666531 23578887643 33445554445599986 22
Q ss_pred cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.||+|++.++|.+|+ ++++.|++++..
T Consensus 324 ------------------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 324 ------------------DYQALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp ------------------SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred ------------------CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 14799999999999999 999999998754
No 87
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.74 E-value=1.3e-16 Score=176.11 Aligned_cols=336 Identities=12% Similarity=0.087 Sum_probs=195.6
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchH-HHHHHHHHHHHHHHcCCCCCcE---
Q 007454 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESAMKKRIMDFLNISENDY--- 190 (603)
Q Consensus 115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~-~~~~~~aR~~Ia~~lna~~~e~--- 190 (603)
++-.+.|+.|++++...+.+. |..+||.+.+..|... .++++.+|+++++++|++.+++
T Consensus 61 as~n~~~~~V~eA~~~~l~~~-----------------y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~ 123 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNK-----------------YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVN 123 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTC-----------------CCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred CCCCCCCHHHHHHHHHHHcCC-----------------CccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceE
Confidence 666778999999987755421 2237787776545443 4666789999999999998765
Q ss_pred EEecc-CchHHHHHHHH-----------------------------HHcCC--EEEEEeccCCccccCHHHHHHHHhhcC
Q 007454 191 VYDYE-SEAVEAMIRTS-----------------------------EKRGA--RVMSAEFSWPRLRINSEKLRKMVVSKG 238 (603)
Q Consensus 191 vf~~e-s~sV~~~~~~a-----------------------------~~~Ga--~V~~~~~~~~~g~i~~~~L~~~l~~~~ 238 (603)
++.+. +.+...++... ...|. ++...++++.++.+|.++|++++...
T Consensus 124 v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~- 202 (490)
T 2a7v_A 124 VQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF- 202 (490)
T ss_dssp CCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHH-
T ss_pred EeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhc-
Confidence 22211 11111111111 11232 23333445457899999999999642
Q ss_pred CCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454 239 KKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPSG 314 (603)
Q Consensus 239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~ldls~~~~Dflv~S~hK~fG~~P~G 314 (603)
+++|+++...+ +|...|++.| ++|+++|+++++|+++..+. ...+..+. ++|++++|+||.|++ |.|
T Consensus 203 ----~~klIi~~~s~--~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~G-p~G 273 (490)
T 2a7v_A 203 ----RPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRG-ARS 273 (490)
T ss_dssp ----CCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCS-CSC
T ss_pred ----CCcEEEEcCCC--CCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCcc-ccc
Confidence 46787765443 4678899966 58999999999999986431 00122232 689999999997765 888
Q ss_pred eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccch
Q 007454 315 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE 394 (603)
Q Consensus 315 ~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~ 394 (603)
|+++.++++.. +.+. .|.-.+. .....+ +. ..+. ...|+++...+++++
T Consensus 274 -G~i~~~~~~~~-~~~~--~~~~~~~-~l~~~i--~~------------~~~~-g~qggp~~~~iaAla----------- 322 (490)
T 2a7v_A 274 -GLIFYRKGVKA-VDPK--TGREIPY-TFEDRI--NF------------AVFP-SLQGGPHNHAIAAVA----------- 322 (490)
T ss_dssp -EEEEEECSEEE-EETT--TEEEEEC-CCHHHH--HH------------HHTT-TTCCSCCHHHHHHHH-----------
T ss_pred -hheeeccchhc-cccc--ccchhhH-HHHHHH--HH------------Hhcc-cCCCCchHHHHHHHH-----------
Confidence 99999886421 1110 0000000 000000 00 0000 124667777777765
Q ss_pred hHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC
Q 007454 395 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR 474 (603)
Q Consensus 395 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~ 474 (603)
.|+..+..-+++...+++...+++|.+.|.++ | +++..+.
T Consensus 323 -----------------------------~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~------G---~~v~~~~-- 362 (490)
T 2a7v_A 323 -----------------------------VALKQACTPMFREYSLQVLKNARAMADALLER------G---YSLVSGG-- 362 (490)
T ss_dssp -----------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS--
T ss_pred -----------------------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc------C---cEEecCC--
Confidence 45555432245677788888999999999875 3 3444321
Q ss_pred CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454 475 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 554 (603)
Q Consensus 475 ~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 554 (603)
...+++.+.+.+. | +....+.+++++.||.+..+..... . .....
T Consensus 363 -t~t~lv~vdl~~~-g--~~~~~~~~~L~~~GI~v~~~~~p~d----~---------------------------~p~~~ 407 (490)
T 2a7v_A 363 -TDNHLVLVDLRPK-G--LDGARAERVLELVSITANKNTCPGD----R---------------------------SAITP 407 (490)
T ss_dssp -CSSSEEEEECTTT-T--CCHHHHHHHHHHTTEECEEECCTTC----C---------------------------CSSSC
T ss_pred -CCCeEEEEEeCCC-C--CCHHHHHHHHHhCCeEEecCccCCC----C---------------------------CCCCC
Confidence 2356788877642 2 3445677778889999876522110 0 01123
Q ss_pred CEEEEecCCC----CCHHHHHHHHHHHHHHHhh
Q 007454 555 TVVTASLGYL----ANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 555 g~VR~Slg~~----tt~eDVd~l~~~l~~~l~~ 583 (603)
+.||++...+ .+++|+++++++|.+.+..
T Consensus 408 ~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 408 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 5799977544 4899999999999998864
No 88
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.74 E-value=2.3e-17 Score=174.38 Aligned_cols=314 Identities=12% Similarity=0.079 Sum_probs=198.3
Q ss_pred CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-- 183 (603)
Q Consensus 107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-- 183 (603)
++.++|+.+...+ .++.+.+++.+.+... .+ .+..+ .-..+.|++|++++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------~~----~y~~~-----------~g~~~l~~~la~~~~~ 78 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKG------------LT----HYGPN-----------IGLLELREAIAEKLKK 78 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTT------------CC----SCCCT-----------TCCHHHHHHHHHHHHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCC------------CC----CCCCC-----------CCcHHHHHHHHHHHHH
Confidence 3578998887663 5677888766543210 00 00000 01246777888887
Q ss_pred --C--CCCCc-EEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCC-ccccCHHHHHHHHh
Q 007454 184 --N--ISEND-YVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWP-RLRINSEKLRKMVV 235 (603)
Q Consensus 184 --n--a~~~e-~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~ 235 (603)
| +++++ ++++... +++ ..+...++..|+++..+++++. +..++.++|++.|.
T Consensus 79 ~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 158 (389)
T 1gd9_A 79 QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT 158 (389)
T ss_dssp HHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred HhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC
Confidence 8 56777 8765321 111 1123345567999999988642 34689999999886
Q ss_pred hcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCCCC---CCCCCC----CCCcEEEEcc
Q 007454 236 SKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKDMD---SFGLSL----VRPDFLICSF 304 (603)
Q Consensus 236 ~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~m~---~ldls~----~~~Dflv~S~ 304 (603)
. ++++++++..+|.||.++| ++.+ ++|+++|+++++|.++....- . ..++.. .+.|+++.|+
T Consensus 159 ~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~ 231 (389)
T 1gd9_A 159 D------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASLDGMFERTITVNGF 231 (389)
T ss_dssp T------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC-TTCCCCCGGGSTTCGGGEEEEEES
T ss_pred c------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc-CCCCCCCHhhccCCCCCEEEEecC
Confidence 3 5889999999999999997 5534 478999999999998876431 0 122222 4579999999
Q ss_pred cccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhh
Q 007454 305 YQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI 382 (603)
Q Consensus 305 hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl 382 (603)
||+|| +.| +|++++++++++.+.+...+ -.++.+.....++
T Consensus 232 sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~-----------------------------------~~~~~~~~~~~a~ 274 (389)
T 1gd9_A 232 SKTFA--MTGWRLGFVAAPSWIIERMVKFQMY-----------------------------------NATCPVTFIQYAA 274 (389)
T ss_dssp TTTTT--CGGGCCEEEECCHHHHHHHHHHHTT-----------------------------------TTCSCCHHHHHHH
T ss_pred hhhcC--CcccceEEEEECHHHHHHHHHHHhh-----------------------------------hccCCCHHHHHHH
Confidence 99999 558 69999887655434321000 0122333332222
Q ss_pred hhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454 383 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMISRRGRCLINWLVNALMKLQHPNTE 461 (603)
Q Consensus 383 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~-iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~ 461 (603)
. ++++.... -.++.+.++.+.+.++|.+.|.++
T Consensus 275 ~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------ 308 (389)
T 1gd9_A 275 A----------------------------------------KALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM------ 308 (389)
T ss_dssp H----------------------------------------HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred H----------------------------------------HHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc------
Confidence 1 23332111 135677888889999999999875
Q ss_pred CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccc
Q 007454 462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS 540 (603)
Q Consensus 462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~ 540 (603)
| +++++|. .+..+.+.+++. + ++. .+.++|++++||.++.|..|...
T Consensus 309 g---~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------- 356 (389)
T 1gd9_A 309 G---LPTVKPK----GAFYIFPRIRDT-G--LTSKKFSELMLKEARVAVVPGSAFGKA---------------------- 356 (389)
T ss_dssp T---CCCCCCC----BTTEECCBCGGG-T--CCHHHHHHHHHHHTCEECEEGGGGCGG----------------------
T ss_pred C---CeecCCC----eeeEEEEeccCC-C--CCHHHHHHHHHHhCCEEEeCchhhCCC----------------------
Confidence 2 3333332 244455566521 1 223 34555656899999988665320
Q ss_pred ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+.+.||+|++. +.+||+++++.|++++++
T Consensus 357 ------------~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 357 ------------GEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp ------------GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 12589999995 899999999999988754
No 89
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.74 E-value=5.2e-16 Score=166.79 Aligned_cols=317 Identities=9% Similarity=0.019 Sum_probs=201.7
Q ss_pred CCceeeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~t------l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|||++++. +.++.+++++.+.+... ..++.+. + ......+.+++|+
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~-------------------~~~~~~~--~---~~~~~~~l~~~la 96 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAM-------------------SHVMFGG--I---THAPAIELCRKLV 96 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHC-------------------SCCCCSS--E---ECHHHHHHHHHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhc-------------------ccccccc--c---CCHHHHHHHHHHH
Confidence 467899997664 25788999887643210 0111011 0 1133456777899
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHH---H----cCCEEEEEeccCC-------------------------------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSE---K----RGARVMSAEFSWP------------------------------- 221 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~---~----~Ga~V~~~~~~~~------------------------------- 221 (603)
+++++++++++|+.. ++++..++..+. + .|.+|......++
T Consensus 97 ~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (429)
T 1s0a_A 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAP 176 (429)
T ss_dssp HHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEEC
T ss_pred HhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeC
Confidence 999998899988864 345555444432 1 2555554432111
Q ss_pred ---------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCc-ccccccccc----HHHH-HHHHhCCcEEEEecccc-CCC
Q 007454 222 ---------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPK 285 (603)
Q Consensus 222 ---------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~-Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~ 285 (603)
.+.++.++|++.|... .+++++|.+... +|+||.+.| ++.+ ++|+++|+++++|.+|. .+.
T Consensus 177 ~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~ 253 (429)
T 1s0a_A 177 APQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGR 253 (429)
T ss_dssp CCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred CCcccccccchHHHHHHHHHHHHhC---CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcc
Confidence 1246788999988631 136889999988 999999888 8755 58999999999999986 332
Q ss_pred C--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccC
Q 007454 286 D--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT 362 (603)
Q Consensus 286 ~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~ 362 (603)
. +..++.....+|++++| |.||+ + .++|++++++++++.+.+ ++. ..
T Consensus 254 ~g~~~~~~~~~~~~d~~t~s--K~l~~-G~~~iG~~~~~~~~~~~l~~---~~~-------~~----------------- 303 (429)
T 1s0a_A 254 TGKLFACEHAEIAPDILCLG--KALTG-GTMTLSATLTTREVAETISN---GEA-------GC----------------- 303 (429)
T ss_dssp TSSSSGGGGGTCCCSEEEEC--GGGGT-SSSCCEEEEECHHHHHHHHT---STT-------SS-----------------
T ss_pred cchHHHhhhcCCCCCEEEec--ccccC-CCccceEEEeCHHHHHHhhc---CCC-------cc-----------------
Confidence 1 11233334578999887 88874 5 789999998876554432 110 00
Q ss_pred cccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHH
Q 007454 363 SKSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 440 (603)
Q Consensus 363 ~~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r 440 (603)
+ ...+| .|..++++.. ++++.+.+ +.+.++
T Consensus 304 ---~--~~~~t~~~n~~~~~a~~----------------------------------------aal~~~~~---~~~~~~ 335 (429)
T 1s0a_A 304 ---F--MHGPTFMGNPLACAAAN----------------------------------------ASLAILES---GDWQQQ 335 (429)
T ss_dssp ---C--SCCCTTTTCHHHHHHHH----------------------------------------HHHHHHHT---CHHHHH
T ss_pred ---c--ccCCCCCCCHHHHHHHH----------------------------------------HHHHHHHh---CCHHHH
Confidence 0 01223 2444443332 57776654 256678
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCC
Q 007454 441 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFS 520 (603)
Q Consensus 441 ~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~ 520 (603)
++.++++|.++|.++.. .|.+..+- ..+.++.|.+.+. ++...+.+.+.++||.++.+
T Consensus 336 ~~~~~~~l~~~L~~l~~-----~~~~~~~~-----~~g~~~~~~~~~~----~~~~~l~~~l~~~Gi~v~~~-------- 393 (429)
T 1s0a_A 336 VADIEVQLREQLAPARD-----AEMVADVR-----VLGAIGVVETTHP----VNMAALQKFFVEQGVWIRPF-------- 393 (429)
T ss_dssp HHHHHHHHHHHHGGGGG-----CTTEEEEE-----EETTEEEEEESSC----BCHHHHHHHHHHTTEECCCB--------
T ss_pred HHHHHHHHHHHHHHHhc-----CCCEEEEE-----EeeEEEEEEECCc----ccHHHHHHHHHHCCCEEecc--------
Confidence 88999999999988631 12243221 1366888887641 23444444444678887520
Q ss_pred chhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 521 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 521 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.||+|+++.+|.+||+++++.|+++++.
T Consensus 394 ---------------------------------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 394 ---------------------------------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred ---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 148999999999999999999999988643
No 90
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.74 E-value=5.8e-17 Score=173.11 Aligned_cols=263 Identities=11% Similarity=0.046 Sum_probs=166.6
Q ss_pred HHHHHcCCEEEEEeccCC--ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HH-HHHHHhCCcEEEE
Q 007454 204 RTSEKRGARVMSAEFSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LW-MRIAQENDWHILI 277 (603)
Q Consensus 204 ~~a~~~Ga~V~~~~~~~~--~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~-i~~a~e~g~~vlv 277 (603)
..++..|+++..++++.. ++.++.++|++.|.. ++++|+++..+|.||.++|. +. +++|+++|+++++
T Consensus 125 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (411)
T 2o0r_A 125 PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVIT 198 (411)
T ss_dssp HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 345567888888887632 356899999998853 68999999999999999997 33 3578999999999
Q ss_pred eccccCCCC--CCCCCCC----CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccc
Q 007454 278 DACALGPKD--MDSFGLS----LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLT 349 (603)
Q Consensus 278 DAaq~~~~~--m~~ldls----~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~ 349 (603)
|.++....- -....+. ..+.|+++.|++|+|| +.| +|++++++++++.+.... .
T Consensus 199 De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~------------~---- 260 (411)
T 2o0r_A 199 DEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN--CTGWKIGWACGPAELIAGVRAAK------------Q---- 260 (411)
T ss_dssp ECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT--CTTTCEEEEECCHHHHHHHHHHH------------H----
T ss_pred EccccccccCCCCCcChhhccCCCCCEEEEeechhhcC--CccceEEEEeeCHHHHHHHHHHH------------h----
Confidence 999875310 0112222 2468999999999999 668 999998766543332100 0
Q ss_pred cccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH
Q 007454 350 DEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV 429 (603)
Q Consensus 350 ~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~ 429 (603)
....+.+....+++. .+++..
T Consensus 261 -------------------~~~~~~~~~~~~a~~----------------------------------------~~l~~~ 281 (411)
T 2o0r_A 261 -------------------YLSYVGGAPFQPAVA----------------------------------------LALDTE 281 (411)
T ss_dssp -------------------HHTSCCCTTHHHHHH----------------------------------------HHHHHC
T ss_pred -------------------hccCCCChHHHHHHH----------------------------------------HHHhCC
Confidence 011222222222221 344432
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcE
Q 007454 430 DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENIS 508 (603)
Q Consensus 430 ~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~ 508 (603)
. -.++.+.++.+.+.++|.+.|.++ | +++++|. .+..+.+.+++..+ ++. +++++|++++||.
T Consensus 282 ~-~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~g~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~ 345 (411)
T 2o0r_A 282 D-AWVAALRNSLRARRDRLAAGLTEI------G---FAVHDSY----GTYFLCADPRPLGY--DDSTEFCAALPEKVGVA 345 (411)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHH------T---CEECCCC----BSSEEEEECGGGTC--CCHHHHHHHHHHHHSEE
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHc------C---CEecCCC----eeEEEEEecCCCCC--CCHHHHHHHHHHhCCEE
Confidence 1 135677888889999999999875 2 4565542 35578888876311 122 3455677788999
Q ss_pred EeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhhcc
Q 007454 509 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEK 588 (603)
Q Consensus 509 lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~~~ 588 (603)
++.|..|......++ +.+ .....+.||+|++. +.+||+++++.|+++++.. -.+
T Consensus 346 v~~g~~f~~~~~~~~-----~~~------------------~~~~~~~iRis~~~--~~e~i~~~~~~l~~~~~~~-~~~ 399 (411)
T 2o0r_A 346 AIPMSAFCDPAAGQA-----SQQ------------------ADVWNHLVRFTFCK--RDDTLDEAIRRLSVLAERP-ATG 399 (411)
T ss_dssp CEEGGGGSCCC-------------------------------CCGGGCEEEECCS--CHHHHHHHHHHHGGGGC------
T ss_pred EcChhhhCCCccccc-----ccc------------------ccCCCCeEEEEecC--CHHHHHHHHHHHHHHHhcc-CcC
Confidence 999987743221111 111 01123689999974 8999999999999987653 333
Q ss_pred ccc
Q 007454 589 ARW 591 (603)
Q Consensus 589 ~~~ 591 (603)
.+|
T Consensus 400 ~~~ 402 (411)
T 2o0r_A 400 VPR 402 (411)
T ss_dssp ---
T ss_pred CCc
Confidence 455
No 91
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.74 E-value=1.5e-16 Score=168.02 Aligned_cols=313 Identities=11% Similarity=0.048 Sum_probs=197.5
Q ss_pred CceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc---
Q 007454 108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--- 183 (603)
Q Consensus 108 ~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l--- 183 (603)
+.++|+.+... ..++.+.+++.+.+... . . .+..+ . | ..+.|++|++++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~----------~----~y~~~--~---g------~~~l~~~la~~l~~~ 83 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQG--A----------N----QYAPM--T---G------VQALREAIAQKTERL 83 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHTT--C----------C----SCCCT--T---C------CHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHhh--c----------c----CCCCC--C---C------CHHHHHHHHHHHHHH
Confidence 46888887655 35678888876543210 0 0 00100 0 0 235666667664
Q ss_pred -C--CCCC-cEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhc
Q 007454 184 -N--ISEN-DYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK 237 (603)
Q Consensus 184 -n--a~~~-e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~ 237 (603)
| ++++ +++++... +++.. ....++..|+++..++++..++.++.++|++.|..
T Consensus 84 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~- 162 (386)
T 1u08_A 84 YGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSE- 162 (386)
T ss_dssp HSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCT-
T ss_pred hCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcc-
Confidence 6 4677 88775321 12111 22345567889988888644567899999998852
Q ss_pred CCCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEeccccC----CCCCCCC-CCC-CCCCcEEEEccccc
Q 007454 238 GKKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALG----PKDMDSF-GLS-LVRPDFLICSFYQI 307 (603)
Q Consensus 238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~----~~~m~~l-dls-~~~~Dflv~S~hK~ 307 (603)
+++++.++..+|.||.++|.+ .+ ++|+++|+++++|.++.. +....++ ++. ..+.|+++.|++|+
T Consensus 163 -----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~ 237 (386)
T 1u08_A 163 -----RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKT 237 (386)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHH
T ss_pred -----cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhh
Confidence 689999999999999999863 33 468999999999999865 3210122 221 24789999999999
Q ss_pred CCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhh
Q 007454 308 FGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR 385 (603)
Q Consensus 308 fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~ 385 (603)
|| +.| +|++++++++++.+.+.. . ....+.+.....++.
T Consensus 238 ~~--~~G~r~G~~~~~~~~~~~l~~~~--------------------------------~---~~~~~~~~~~~~a~~-- 278 (386)
T 1u08_A 238 YH--MTGWKVGYCVAPAPISAEIRKVH--------------------------------Q---YLTFSVNTPAQLALA-- 278 (386)
T ss_dssp TT--CGGGCCEEEECCHHHHHHHHHHH--------------------------------H---HHTSSCCHHHHHHHH--
T ss_pred cC--CcccceEEEEcCHHHHHHHHHHH--------------------------------H---hhccCCChHHHHHHH--
Confidence 99 568 899998876544333100 0 011223333322222
Q ss_pred hcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce
Q 007454 386 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL 465 (603)
Q Consensus 386 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl 465 (603)
.+++.. .-.++.+.++.+.+.++|.+.|.++ |
T Consensus 279 --------------------------------------~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~------g--- 310 (386)
T 1u08_A 279 --------------------------------------DMLRAE-PEHYLALPDFYRQKRDILVNALNES------R--- 310 (386)
T ss_dssp --------------------------------------HHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS------S---
T ss_pred --------------------------------------HHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC------C---
Confidence 344432 1136677888889999999999875 2
Q ss_pred EEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454 466 VKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 544 (603)
Q Consensus 466 v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 544 (603)
++++.|. .+..+.+.+++..+ ++.. +.++|++++||.++.|..|...
T Consensus 311 ~~~~~~~----~g~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~-------------------------- 358 (386)
T 1u08_A 311 LEILPCE----GTYFLLVDYSAVST--LDDVEFCQWLTQEHGVAAIPLSVFCAD-------------------------- 358 (386)
T ss_dssp CEECCCC----BSSEEEEECTTTCC--SCHHHHHHHHHHHSCEECEEGGGGCSS--------------------------
T ss_pred CeecCCC----ceEEEEEecCCCCC--CCHHHHHHHHHHhCCEEEeCchHhCCC--------------------------
Confidence 5566542 36688888865310 2233 4455777899999987544321
Q ss_pred ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
....+.+|+|++ ++.+||+++++.|++|
T Consensus 359 ------~~~~~~iRis~~--~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 359 ------PFPHKLIRLCFA--KKESTLLAAAERLRQL 386 (386)
T ss_dssp ------CCCSCEEEEECC--SCHHHHHHHHHHHTTC
T ss_pred ------CCCCCEEEEEEc--CCHHHHHHHHHHHhhC
Confidence 012368999998 4899999999988653
No 92
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.74 E-value=1.7e-17 Score=174.36 Aligned_cols=312 Identities=11% Similarity=0.092 Sum_probs=192.1
Q ss_pred CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454 107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN- 184 (603)
Q Consensus 107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln- 184 (603)
.+.++|+.+..++ .++.+++++.+.+... .+ .+..+ ....+.|+.|+++++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------~~----~y~~~-----------~~~~~l~~~la~~~~~ 81 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEG------------KT----HYTDS-----------RGILELREKISELYKD 81 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTT------------CC----SCCCT-----------TCCHHHHHHHHHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcC------------cc----CCCCC-----------CCCHHHHHHHHHHHHH
Confidence 4578999887764 5777888776543210 00 00100 012367788888875
Q ss_pred -----CCCCcEEEeccC-chHHHHHHHHHHcCCEEEEEeccCCc--------c------ccCHHHHHHHHhhcCCCCCCe
Q 007454 185 -----ISENDYVYDYES-EAVEAMIRTSEKRGARVMSAEFSWPR--------L------RINSEKLRKMVVSKGKKKKQR 244 (603)
Q Consensus 185 -----a~~~e~vf~~es-~sV~~~~~~a~~~Ga~V~~~~~~~~~--------g------~i~~~~L~~~l~~~~~~~~~t 244 (603)
+++++++++... +++..++..+.+.|.+|......++. | .++.++|++.|.. ++
T Consensus 82 ~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~d~~~l~~~l~~------~~ 155 (370)
T 2z61_A 82 KYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCDFTVESLEEALSD------KT 155 (370)
T ss_dssp HSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSSHHHHHHHCCS------SE
T ss_pred HhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeCCCHHHHHHhccc------Cc
Confidence 677888776532 23333333333334344333222210 0 0578899888853 58
Q ss_pred eEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCC-CCCCCC----CCCCcEEEEcccccCCCCCCc--eEE
Q 007454 245 GLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDM-DSFGLS----LVRPDFLICSFYQIFGENPSG--FGC 317 (603)
Q Consensus 245 ~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m-~~ldls----~~~~Dflv~S~hK~fG~~P~G--~G~ 317 (603)
++++++..+|.||.++|.++.++|+++|+++++|.++....-- .+.++. ..+.|+++.|+||+|| +.| +|+
T Consensus 156 ~~v~~~~p~nptG~~~~~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~ 233 (370)
T 2z61_A 156 KAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA--MTGWRIGY 233 (370)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT--CGGGCCEE
T ss_pred eEEEEcCCCCCcCcccCHHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC--CccceEEE
Confidence 8999999999999999999335899999999999998764300 022332 2367999999999999 568 899
Q ss_pred EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454 318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE 397 (603)
Q Consensus 318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~ 397 (603)
+++++++.+.+.+... ...++.|.....++.
T Consensus 234 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~a~~-------------- 264 (370)
T 2z61_A 234 VISNDEIIEAILKLQQ-----------------------------------NLFISAPTISQYAAL-------------- 264 (370)
T ss_dssp EECCHHHHHHHHHHHH-----------------------------------HHTSSSCHHHHHHHG--------------
T ss_pred EEECHHHHHHHHHHHh-----------------------------------hcccCCCHHHHHHHH--------------
Confidence 9988765443331100 012234444433332
Q ss_pred HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454 398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR 477 (603)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r 477 (603)
++++.+..-.++.+.++.+.+.++|.+.|.++ | +++++|. .
T Consensus 265 --------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~ 305 (370)
T 2z61_A 265 --------------------------KAFEKETEREINSMIKEFDRRRRLVLKYVKDF------G---WEVNNPI----G 305 (370)
T ss_dssp --------------------------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T---CBCCCCC----B
T ss_pred --------------------------HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc------C---CeecCCC----c
Confidence 23332001135667778888899999999875 2 3334432 2
Q ss_pred CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454 478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV 557 (603)
Q Consensus 478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V 557 (603)
+..+.+.+++ + ...+.++|++++||.++.|..|.. ...+.+
T Consensus 306 ~~~~~~~~~~-~----~~~~~~~l~~~~gi~v~~g~~f~~----------------------------------~~~~~~ 346 (370)
T 2z61_A 306 AYYVFPNIGE-D----GREFAYKLLKEKFVALTPGIGFGS----------------------------------KGKNYI 346 (370)
T ss_dssp TTEECCBCSS-C----HHHHHHHHHHHHCEECEEGGGGCG----------------------------------GGSSBE
T ss_pred ceEEEEecCC-C----HHHHHHHHHHhCCEEEeCchhhCC----------------------------------CCCCEE
Confidence 4444455543 2 123455666678999998866531 012589
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 558 TASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 558 R~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
|+|++ ++.+||+++++.|+++++
T Consensus 347 Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 347 RISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp EEECC--SCHHHHHHHHHHHHHHHC
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHh
Confidence 99999 799999999999998864
No 93
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.74 E-value=7.1e-17 Score=171.71 Aligned_cols=321 Identities=12% Similarity=0.065 Sum_probs=201.0
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454 115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD 193 (603)
Q Consensus 115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~ 193 (603)
++..++++.+++++.+.+... +..+++.+.+..+.. ...+.+.+|+.+++++|+++++++++
T Consensus 32 ~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~ 94 (417)
T 3n0l_A 32 ASENFTLPEVMEVMGSILTNK-----------------YAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPN 94 (417)
T ss_dssp TTCCCCCHHHHHHHTBGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred cccCCCCHHHHHHHhhhhhcc-----------------ccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEec
Confidence 445567999999987654211 112445444333332 24566679999999999987777665
Q ss_pred ccCchHHHHHHHHHHcCCE--------------------------EEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEE
Q 007454 194 YESEAVEAMIRTSEKRGAR--------------------------VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLF 247 (603)
Q Consensus 194 ~es~sV~~~~~~a~~~Ga~--------------------------V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv 247 (603)
..++++..++..+.+.|.+ +..++++ .++.++.++|++.|... ++++|
T Consensus 95 sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~v 168 (417)
T 3n0l_A 95 SGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-LDGRIDYEKVREIAKKE-----KPKLI 168 (417)
T ss_dssp SHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC-TTSSCCHHHHHHHHHHH-----CCSEE
T ss_pred cHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC-CCCCcCHHHHHHHHHhc-----CCeEE
Confidence 4444443333333333333 3334444 45668999999999731 57788
Q ss_pred EEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC---CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC-
Q 007454 248 VFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK- 322 (603)
Q Consensus 248 ~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~---m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk- 322 (603)
++...+ +|...|++.+ ++|+++|+++++|.+|..+.. ..+..+. .+|++++|+||+|++ |.| |+++.++
T Consensus 169 ~~~~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g-~~~-G~~~~~~~ 242 (417)
T 3n0l_A 169 VCGASA--YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRG-PRG-GIIMTNDE 242 (417)
T ss_dssp EECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCS-CSC-EEEEESCH
T ss_pred EECCcc--cCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCC-CCe-eEEEECCH
Confidence 766555 4999999866 589999999999999754430 0123333 579999999998865 765 8888873
Q ss_pred CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454 323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE 402 (603)
Q Consensus 323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~ 402 (603)
++.+.+.+.... ...|+++...++++.
T Consensus 243 ~~~~~~~~~~~~----------------------------------~~~~~~~~~~~aa~~------------------- 269 (417)
T 3n0l_A 243 ELAKKINSAIFP----------------------------------GIQGGPLMHVIAAKA------------------- 269 (417)
T ss_dssp HHHHHHHHHHTT----------------------------------TTCSSCCHHHHHHHH-------------------
T ss_pred HHHHHHhhhhCC----------------------------------cccCCcHHHHHHHHH-------------------
Confidence 443333211000 013455555555443
Q ss_pred hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454 403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA 482 (603)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs 482 (603)
.+++....-+++.+.++.+.++++|.+.|.++ | ++++.+ ...+..+.
T Consensus 270 ---------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~---~~~~~~~~ 316 (417)
T 3n0l_A 270 ---------------------VGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR------K---FKLVSD---GTDNHLVL 316 (417)
T ss_dssp ---------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGG---SCSSSEEE
T ss_pred ---------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC------C---ceeccC---CCCceEEE
Confidence 34444322346778888888999999999873 2 344432 12355666
Q ss_pred EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454 483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG 562 (603)
Q Consensus 483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg 562 (603)
+.+.+. .++...+.+++.++||.++.+.. +.... .......+|+++.
T Consensus 317 ~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~--~~~~~----------------------------~~~~~~~~ri~~~ 363 (417)
T 3n0l_A 317 MSFLDR---EFSGKDADLALGNAGITANKNTV--PGEIR----------------------------SPFITSGLRLGTP 363 (417)
T ss_dssp EECTTS---SSCHHHHHHHHHHTTEECEECCC--TTCCS----------------------------CTTTCSEEEEECH
T ss_pred EEcccC---CCCHHHHHHHHHHcCeEEecccc--CCCCc----------------------------ccCCCCeeEecCH
Confidence 666432 13456777888889999986532 11000 0112257999987
Q ss_pred CCC----CHHHHHHHHHHHHHHHhh
Q 007454 563 YLA----NFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 563 ~~t----t~eDVd~l~~~l~~~l~~ 583 (603)
.++ +.+||+++++.|++.+..
T Consensus 364 ~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 364 ALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 654 589999999999998865
No 94
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.73 E-value=5.4e-17 Score=172.60 Aligned_cols=321 Identities=12% Similarity=0.097 Sum_probs=194.1
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEE
Q 007454 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVY 192 (603)
Q Consensus 114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf 192 (603)
.++..+.++.+++++.+.+... +..+++++.+..+.. .....+.+|+.+++++|++++++++
T Consensus 36 ~~~~n~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~ 98 (420)
T 3gbx_A 36 IASENYTSPRVMQAQGSQLTNK-----------------YAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQP 98 (420)
T ss_dssp CTTCCCCCHHHHHHHTSGGGGC-----------------CC--------------CHHHHHHHHHHHHHHHTCSEEECCC
T ss_pred eccCCCCCHHHHHHHHHHHhcc-----------------cccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEe
Confidence 3445567999999987654211 112445444332222 2456677999999999998777756
Q ss_pred eccCchHHHHHHHHHHcCCEEEE--------------------------EeccCCccccCHHHHHHHHhhcCCCCCCeeE
Q 007454 193 DYESEAVEAMIRTSEKRGARVMS--------------------------AEFSWPRLRINSEKLRKMVVSKGKKKKQRGL 246 (603)
Q Consensus 193 ~~es~sV~~~~~~a~~~Ga~V~~--------------------------~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~L 246 (603)
+..++++..++..+.+.|.+|.. .+++ .++.++.++|+++|..+ ++++
T Consensus 99 ~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~ 172 (420)
T 3gbx_A 99 HSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEH-----KPKM 172 (420)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC-TTCSCCHHHHHHHHHHH-----CCSE
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC-ccCCcCHHHHHHHHHhc-----CCeE
Confidence 54444444433333334444433 2333 34568999999999752 4788
Q ss_pred EEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 247 FVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 247 v~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
|.+...+| |...|++.+ ++|+++|+++++|.+|..+. ...+..+. .+|++++|+||+||+ |.| |+++.++
T Consensus 173 v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g-~~g-g~~~~~~ 246 (420)
T 3gbx_A 173 IIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAG-PRG-GLILAKG 246 (420)
T ss_dssp EEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCS-CSC-EEEEESS
T ss_pred EEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCC-CCc-eEEEEcC
Confidence 87765433 678999865 58999999999999975432 00122333 389999999999954 777 8888877
Q ss_pred C---CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454 323 S---TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR 399 (603)
Q Consensus 323 ~---~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~ 399 (603)
. ....+.+..+. .-.|+++...+++++
T Consensus 247 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~a~~---------------- 276 (420)
T 3gbx_A 247 GDEELYKKLNSAVFP----------------------------------SAQGGPLMHVIAGKA---------------- 276 (420)
T ss_dssp CCHHHHHHHHHHHC--------------------------------------CCCCHHHHHHHH----------------
T ss_pred CcHHHHHHhhhhcCC----------------------------------CCCCCcchhHHHHHH----------------
Confidence 3 22222110000 013445555554443
Q ss_pred hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454 400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP 479 (603)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ 479 (603)
.++.....-+++.+.++.+.+.++|.+.|.++ | ++++.+ ...++
T Consensus 277 ------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~---~~~~~ 320 (420)
T 3gbx_A 277 ------------------------VALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR------G---YKVVSG---GTENH 320 (420)
T ss_dssp ------------------------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGG---SCSSS
T ss_pred ------------------------HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc------C---CeeccC---CCCCe
Confidence 23332212245777888899999999999874 2 455443 13467
Q ss_pred EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcc-cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454 480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT 558 (603)
Q Consensus 480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~-C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR 558 (603)
++.+.+.+. .+....+.+++.++||.++.+.. .+.+ .......||
T Consensus 321 ~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~~~~~~-------------------------------~~~~~~~iR 366 (420)
T 3gbx_A 321 LFLLDLVDK---NLTGKEADAALGRANITVNKNSVPNDPK-------------------------------SPFVTSGIR 366 (420)
T ss_dssp EEEEECGGG---TCCHHHHHHHHHHTTEECEEECCTTCSS-------------------------------CTTTCSEEE
T ss_pred EEEEEcCCC---CCCHHHHHHHHHHCCcEeccccCCCCcc-------------------------------ccCCCcceE
Confidence 777777542 13456677777889999886321 0000 001123599
Q ss_pred EecCCCCC----HHHHHHHHHHHHHHHhh
Q 007454 559 ASLGYLAN----FEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 559 ~Slg~~tt----~eDVd~l~~~l~~~l~~ 583 (603)
+|+...++ .+||+++++.|++.++.
T Consensus 367 i~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 367 IGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp EECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred EecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 99987754 89999999999998866
No 95
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.73 E-value=1.7e-16 Score=170.41 Aligned_cols=144 Identities=12% Similarity=0.033 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchHHH-HHHHHHHcCCEEEEEeccCCcc
Q 007454 169 SGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAVEA-MIRTSEKRGARVMSAEFSWPRL 223 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV~~-~~~~a~~~Ga~V~~~~~~~~~g 223 (603)
....++.|++|++++|++ +.+++.. .+.+... +...++..|+++..++.+
T Consensus 61 ~~~~~~l~~~ia~~~g~~-~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~---- 135 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE-ACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA---- 135 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred ChHHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC----
Confidence 355678999999999985 4444421 1112211 112456678888887753
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh-CCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE-NDWHILIDACALGPKDMDSFGLSLVRPDFLI 301 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e-~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv 301 (603)
+.++|++.|.. +|++|.+...+|.||.++|++.+ ++|++ +|++|++|.++..+..-.++ .+++|+++
T Consensus 136 --d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~---~~~~di~~ 204 (404)
T 1e5e_A 136 --IPGEVKKHMKP------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV---DFGVDVVV 204 (404)
T ss_dssp --STTHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG---GGTCSEEE
T ss_pred --CHHHHHHhcCC------CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc---ccCCEEEE
Confidence 56788888753 69999999999999999999865 58999 99999999999877511133 35899999
Q ss_pred EcccccCCCCCCc--eEEEEEeCCCCc-CcC
Q 007454 302 CSFYQIFGENPSG--FGCLFVKKSTVP-ILV 329 (603)
Q Consensus 302 ~S~hK~fG~~P~G--~G~L~vkk~~~~-~L~ 329 (603)
.|++|+||. |.+ .|+++++++.+. .+.
T Consensus 205 ~S~sK~~~~-~g~ri~G~~~~~~~~~~~~l~ 234 (404)
T 1e5e_A 205 HSATKYING-HTDVVAGLICGKADLLQQIRM 234 (404)
T ss_dssp EETTTTTTC-SSCCCCEEEEECHHHHHHHHH
T ss_pred EcCccccCC-CCCCeEEEEEECHHHHHHHHH
Confidence 999999986 655 599999887654 443
No 96
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.73 E-value=3.2e-17 Score=176.21 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeccCchHHH------------------------HHHHHHHcCCEEEEEeccCCccccCH
Q 007454 172 ESAMKKRIMDFLNISENDYVYDYESEAVEA------------------------MIRTSEKRGARVMSAEFSWPRLRINS 227 (603)
Q Consensus 172 ~~~aR~~Ia~~lna~~~e~vf~~es~sV~~------------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~ 227 (603)
..+.|++|++++|++ +.++|...++++.. +...+++.|+++..++.+ +.
T Consensus 69 ~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~------d~ 141 (403)
T 3cog_A 69 RNCLEKAVAALDGAK-YCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS------KI 141 (403)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT------SH
T ss_pred HHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC------CH
Confidence 457888999999876 55555322222211 222334567777777653 67
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCC-cEEEEeccccCCCCCCCCCCCCCCCcEEEEccc
Q 007454 228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEND-WHILIDACALGPKDMDSFGLSLVRPDFLICSFY 305 (603)
Q Consensus 228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g-~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h 305 (603)
++|++.|.. +|++|.+...+|.||.++|++.+ ++|+++| +++++|.++..+....+++ +++|+++.|++
T Consensus 142 ~~l~~~i~~------~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~---~~~div~~S~s 212 (403)
T 3cog_A 142 KLLEAAITP------ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLA---LGADISMYSAT 212 (403)
T ss_dssp HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTT---TTCSEEEEETT
T ss_pred HHHHHhcCc------CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccc---cCCeEEEEcCh
Confidence 888888853 68999999999999999999966 5899999 9999999998875213554 57999999999
Q ss_pred ccCCCCCCce--EEEEEeC-CCCcCc
Q 007454 306 QIFGENPSGF--GCLFVKK-STVPIL 328 (603)
Q Consensus 306 K~fG~~P~G~--G~L~vkk-~~~~~L 328 (603)
|+||+ |.|+ |++++++ ++.+.+
T Consensus 213 K~~~g-~~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 213 KYMNG-HSDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp TTTTC-SSCCCCEEEEECCHHHHHHH
T ss_pred hhccC-CCCCeEEEEEECcHHHHHHH
Confidence 99987 7774 9998864 443333
No 97
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.73 E-value=5.1e-17 Score=174.09 Aligned_cols=326 Identities=12% Similarity=0.020 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEec-cCchH----------------------HHHHHHHHHcCCEEEEEeccCCccccC
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDY-ESEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~-es~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
++.+++++++++++|++ +.+|.. -++++ ......++..|++++.++++..++.++
T Consensus 42 ~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 119 (418)
T 2c81_A 42 SMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCID 119 (418)
T ss_dssp CHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred HHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcC
Confidence 45678889999999986 333321 11111 112334556799999998874467899
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc-
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF- 304 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~- 304 (603)
.++|++.|.. ++++|.+ +|.||...|++.+ ++|+++|++|++|+++..+.....-.+..+ .|++++|+
T Consensus 120 ~~~l~~~i~~------~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s 189 (418)
T 2c81_A 120 PQLIKSAITD------KTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQ 189 (418)
T ss_dssp HHHHGGGCCT------TEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECC
T ss_pred HHHHHHhhCC------CCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccc-cceEEEecc
Confidence 9999988853 5788775 5689999999855 589999999999999988751000011112 35666666
Q ss_pred -cccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc--cCCCChhhhh
Q 007454 305 -YQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV--AATNTFSGPM 380 (603)
Q Consensus 305 -hK~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e--~GT~n~~gi~ 380 (603)
||+|| +...|+++.+ +++.+.+++...+|.... ... . . . +.. ++ .||.++.
T Consensus 190 ~~K~~~--~g~~g~~~~~~~~l~~~~~~~~~~~~~~~--~~~--~---~-----~------~~~--~~~~~~~~~~~--- 244 (418)
T 2c81_A 190 QGKVLT--AGEGGIIVTKNPRLFELIQQLRADSRVYC--DDS--S---E-----L------MHG--DMQLVKKGDIQ--- 244 (418)
T ss_dssp TTSSSC--SSSCEEEEESCHHHHHHHHHHHBTTEEEC--SCG--G---G-----C------CTT--CBSEEECCSSC---
T ss_pred CCcccC--CCCeEEEEECCHHHHHHHHHHHHhCcccc--ccc--c---c-----c------ccc--hhhcccccccc---
Confidence 99999 5234555554 344444443222222110 000 0 0 0 000 12 2332222
Q ss_pred hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454 381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT 460 (603)
Q Consensus 381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~ 460 (603)
|+.. .+..+ .+++.....-+++.+.++.+.+.++|.+.|.+++
T Consensus 245 g~~~---------~~~~~------------------------~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~---- 287 (418)
T 2c81_A 245 GSNY---------CLSEF------------------------QSAILLDQLQELDDKNAIREKNAMFLNDALSKID---- 287 (418)
T ss_dssp CCBC---------CCCHH------------------------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST----
T ss_pred CcCC---------CcCHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----
Confidence 2210 00000 0233222222578888888999999999998753
Q ss_pred CCCceEEEeCCCCC-CCCC-CEEEEEEccCCCCccCHHHHHHHHhcC-CcE---EeeCcccCccC--CchhhhhhH----
Q 007454 461 EGNALVKIYGPKIR-FDRG-PALAFNVFDWKREKIEPVLVQKLADRE-NIS---LSYGSLHHIWF--SDKYQKEKD---- 528 (603)
Q Consensus 461 ~g~plv~Iygp~~~-~~rg-~ivsFnv~~~~g~~v~~~~V~~Lad~~-gI~---lr~G~~C~~~~--~~~~~~~~~---- 528 (603)
.++++++... .... .+++|.+++....-++...+.+.+.++ ||. ++.|+.|.... .... ....
T Consensus 288 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~-~~~~~~~~ 362 (418)
T 2c81_A 288 ----GIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPW-TKNRYLKS 362 (418)
T ss_dssp ----TEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGG-GCTTSCHH
T ss_pred ----CcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhccc-cccccccc
Confidence 3788865321 1123 588888873100012334444444455 999 99987542110 0000 0000
Q ss_pred H--HHHhh--hcccccccccccccCCCCCCCEEEEecCCCC-CHHHHHHHHHHHHHHHhh
Q 007454 529 N--VLEKT--DREAKSKSDNNRKDKANLGITVVTASLGYLA-NFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 529 ~--~l~~~--~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~t-t~eDVd~l~~~l~~~l~~ 583 (603)
. .++.. ..|. +. .....++||+|++.++ |.|||++++++|++++..
T Consensus 363 ~~~~~~~~~~~~~~-----~~----~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 363 VRKTEAYWRGLHYP-----VS----ERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHCCHHHHHTCCCH-----HH----HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccCCCh-----HH----HHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 0 00000 0000 00 0011258999999999 999999999999998753
No 98
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.72 E-value=5e-16 Score=161.97 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=179.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCc-h-----------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHH
Q 007454 173 SAMKKRIMDFLNISENDYVYDYESE-A-----------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV 234 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es~-s-----------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l 234 (603)
.+.|++|++++|+++++++|+.... + .......++..|+++..+++++ .+.++.++|++.+
T Consensus 64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~l 142 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIGIVLGNGASEIIELSISLFEKILIIVPSYAEYEINAKKHGVSVVFSYLDE-NMCIDYEDIISKI 142 (361)
T ss_dssp HHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTCSEEEEEESCCTHHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHcCcEEEecCChHHHHHHHHHcCCeEEEeecCc-ccCCCHHHHHHhc
Confidence 5789999999999999998764321 1 1223445677899999999884 5677889999888
Q ss_pred hhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCCC---CCCCCC-CCCCCcEEEEcccc
Q 007454 235 VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPKD---MDSFGL-SLVRPDFLICSFYQ 306 (603)
Q Consensus 235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~~---m~~ldl-s~~~~Dflv~S~hK 306 (603)
. + +++++++..+|.||.++|.+.+ ++|+++|+++++|.++..... ...+.+ ...+.++++.|++|
T Consensus 143 ~------~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 215 (361)
T 3ftb_A 143 D------D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTK 215 (361)
T ss_dssp T------T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSS
T ss_pred c------C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChh
Confidence 5 2 7899999999999999997643 356799999999998763220 011221 12334577889999
Q ss_pred cCCCCCCc--eEEEE-EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhh
Q 007454 307 IFGENPSG--FGCLF-VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIE 383 (603)
Q Consensus 307 ~fG~~P~G--~G~L~-vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~ 383 (603)
.|| +.| +|+++ .+++..+.+... ....++|..+..++.
T Consensus 216 ~~~--~~G~r~g~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~ 256 (361)
T 3ftb_A 216 FFA--MPGIRFGYGITNNKEIAAKIKAK-------------------------------------QNPWNINCFAEMAAI 256 (361)
T ss_dssp TTS--CGGGCCEEEEESCHHHHHHHHTT-------------------------------------SCTTCSCHHHHHHHH
T ss_pred hcC--CCCcceeEEEeCCHHHHHHHHhh-------------------------------------CCCCCCCHHHHHHHH
Confidence 998 445 57776 333333222210 012344554444332
Q ss_pred hhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 007454 384 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN 463 (603)
Q Consensus 384 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~ 463 (603)
++++. .-.++.+.++.+.+.++|.+.|.+++
T Consensus 257 ----------------------------------------~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~------- 287 (361)
T 3ftb_A 257 ----------------------------------------NCLKD--TNYIEESLLWIKKERKRFIEELNKIG------- 287 (361)
T ss_dssp ----------------------------------------HTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSS-------
T ss_pred ----------------------------------------HHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 23321 11356778888899999999998752
Q ss_pred ceEE-EeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccc
Q 007454 464 ALVK-IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS 542 (603)
Q Consensus 464 plv~-Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~ 542 (603)
.+. ++.+ .++.+.|.+++. +...+.+.+.++||.++.|..|..
T Consensus 288 -~~~~~~~~-----~~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~~~~------------------------- 331 (361)
T 3ftb_A 288 -FIKRVFSP-----HANFVLCRLENI-----SGEKLYDSLLKEDIVIRRCCNFIG------------------------- 331 (361)
T ss_dssp -SEEEEECC-----SSSEEEEEESSS-----CHHHHHHHHHTTTEECEECTTSTT-------------------------
T ss_pred -CCceecCC-----CCeEEEEEcCCC-----CHHHHHHHHHHCCeEEeeCccCCC-------------------------
Confidence 266 6654 467888888763 233344444456999999877631
Q ss_pred ccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 543 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 543 ~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+.+.||+|++ +.+|+++|+++|+++++
T Consensus 332 ---------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 332 ---------LDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp ---------CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 12369999987 99999999999998764
No 99
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.72 E-value=1.1e-16 Score=169.17 Aligned_cols=313 Identities=10% Similarity=0.042 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeccCchHHH----------------------HHHHHHHcCCEEEEEeccCCccccCH
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYESEAVEA----------------------MIRTSEKRGARVMSAEFSWPRLRINS 227 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~----------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~ 227 (603)
....+.|++|++++|++ ++++++.-++++.. ....++..|++++.+++++.++.++.
T Consensus 38 ~~~~~l~~~la~~~~~~-~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~ 116 (388)
T 1b9h_A 38 DEVNSFEREFAAHHGAA-HALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDP 116 (388)
T ss_dssp SHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCH
T ss_pred HHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCH
Confidence 34568899999999985 45544322222111 23345667999999998754578999
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC-CcEEEEccc
Q 007454 228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR-PDFLICSFY 305 (603)
Q Consensus 228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~-~Dflv~S~h 305 (603)
++|+++|.. ++++|+ .+|.||.+.|++.+ ++|+++|++|++|++|..|......++..++ +++.++|.|
T Consensus 117 ~~l~~~i~~------~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~ 187 (388)
T 1b9h_A 117 EAVAAAVTP------RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNG 187 (388)
T ss_dssp HHHHHHCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTT
T ss_pred HHHHHhcCc------CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCC
Confidence 999999853 578877 68899999999865 5899999999999999876511113444555 677777788
Q ss_pred ccCCCCCCceEEEEEeCCCC---cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhh
Q 007454 306 QIFGENPSGFGCLFVKKSTV---PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI 382 (603)
Q Consensus 306 K~fG~~P~G~G~L~vkk~~~---~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl 382 (603)
|++++ + ..|+++.++..+ ..+.....+|... .. + .++ . .+.||..-...++.
T Consensus 188 K~l~g-~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~--------~~~-------~--~~~g~~~~~~~~~~ 242 (388)
T 1b9h_A 188 KLMTA-G-EGGAVVFPDGETEKYETAFLRHSCGRPR----DD--R--------RYF-------H--KIAGSNMRLNEFSA 242 (388)
T ss_dssp SSSCS-S-SCEEEEECTTCHHHHHHHHHHTBTTCCT----TC--S--------SCC-------C--CSCCCBCBCBHHHH
T ss_pred CcccC-C-CeEEEEECCHHHHHHHHHHHHHhCCCCc----cC--c--------cce-------e--ecccccCCcCHHHH
Confidence 98873 4 458787777632 3232111112100 00 0 000 0 13455321221111
Q ss_pred hhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007454 383 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEG 462 (603)
Q Consensus 383 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g 462 (603)
+ .+. .++++ ++...++.+.+.++|.+.|.+++
T Consensus 243 a-------------~~~------------------------~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~------ 274 (388)
T 1b9h_A 243 S-------------VLR------------------------AQLAR-----LDEQIAVRDERWTLLSRLLGAID------ 274 (388)
T ss_dssp H-------------HHH------------------------HHHTT-----HHHHHHHHHHHHHHHHHHHHTST------
T ss_pred H-------------HHH------------------------HHHHH-----HHHHHHHHHHHHHHHHHHhccCC------
Confidence 1 000 23332 44566677788999999998763
Q ss_pred CceEEEeCCCCC--CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCch-hhh------hhHHHHHh
Q 007454 463 NALVKIYGPKIR--FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDK-YQK------EKDNVLEK 533 (603)
Q Consensus 463 ~plv~Iygp~~~--~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~-~~~------~~~~~l~~ 533 (603)
.++++++... ...+.++.|.+++..+ .....+.+.+.++||.++.|+.... ..+ +.. .......+
T Consensus 275 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 348 (388)
T 1b9h_A 275 --GVVPQGGDVRADRNSHYMAMFRIPGLTE--ERRNALVDRLVEAGLPAFAAFRAIY--RTDAFWELGAPDESVDAIARR 348 (388)
T ss_dssp --TCEECCCCTTCCBCCCSEEEEECTTCCH--HHHHHHHHHHHHTTCCEEECCCCGG--GSHHHHHSSCCSSCHHHHHHT
T ss_pred --CccccCCCcCCCccceEEEEEEeCCcCc--ccHHHHHHHHHHCCCCcccccCccc--cChHhHhcCCCcccccccccC
Confidence 2677765321 1236799999876311 1123344444468999998754110 000 000 00000000
Q ss_pred hhcccccccccccccCCCCCCCEEEEecCCCC-CHHHHHHHHHHHHHHHhh
Q 007454 534 TDREAKSKSDNNRKDKANLGITVVTASLGYLA-NFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~t-t~eDVd~l~~~l~~~l~~ 583 (603)
+... .....++||+|++..+ |.|||+++++.|++++++
T Consensus 349 ~~~~------------~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 349 CPNT------------DAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHH------------HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CHHH------------HHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0000 0111258999999999 999999999999998753
No 100
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.72 E-value=1.3e-16 Score=167.54 Aligned_cols=298 Identities=12% Similarity=0.042 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEecc-Cc----------------------hHHHHHHHHHHcCCEEEEEeccCCccccC
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYE-SE----------------------AVEAMIRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s~----------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
....+.|++|++++|.+ +.+|... ++ ........++..|+++..++++ .++.++
T Consensus 38 ~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d 114 (374)
T 3uwc_A 38 AELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE-NGYVID 114 (374)
T ss_dssp HHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTSSBC
T ss_pred hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCCCcC
Confidence 34567888899998876 4443211 11 1122334566789999999987 578889
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC--CcEEEEc
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR--PDFLICS 303 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~--~Dflv~S 303 (603)
.++|++.|.. +++++. .+|.||.+.|++.+ ++|+++|+++++|+++..+. .++....+ +|++++|
T Consensus 115 ~~~l~~~~~~------~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~---~~~~~~~~~~~d~~~~s 182 (374)
T 3uwc_A 115 PEKIEAAITD------KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILG---RINDKFVGSWGQFACFS 182 (374)
T ss_dssp GGGTGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC---EETTEETTSSSSEEEEE
T ss_pred HHHHHHhCCC------CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCc---eeCCeeccccccEEEEe
Confidence 9999888753 577777 67899999999966 58999999999999998875 24444444 7999999
Q ss_pred cc--ccCCCCCCc-eEEEEEeCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454 304 FY--QIFGENPSG-FGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP 379 (603)
Q Consensus 304 ~h--K~fG~~P~G-~G~L~vkk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi 379 (603)
+| |++| |.| .|+++.++. ..+.+++...+|... . + . ....+.++ .+
T Consensus 183 ~~~~K~l~--~~g~~g~~~~~~~~~~~~~~~~~~~~~~~------~-~----------~----------~~~~~~~~-~~ 232 (374)
T 3uwc_A 183 LHPLKNLN--VWSDAGVIITHSDEYAEKLRLYRNHGLIN------R-D----------V----------CVEYGINC-RM 232 (374)
T ss_dssp CSSSSSSC--CSSCCEEEEESCHHHHHHHHHHTBTTEEE------T-T----------E----------ESSCCCBC-BC
T ss_pred CCCCCcCC--ccceeEEEEeCCHHHHHHHHHHHhcCccc------c-C----------c----------cccccccC-CC
Confidence 99 9999 534 555555543 323333222222210 0 0 0 01111222 12
Q ss_pred hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454 380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN 459 (603)
Q Consensus 380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~ 459 (603)
.++. +++......+++.+.++.+.+.+++.+.|.++.
T Consensus 233 ~~~~----------------------------------------aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--- 269 (374)
T 3uwc_A 233 DTIQ----------------------------------------AVIANRLMNQLETITEKRRGIAHLYDQSFVDLS--- 269 (374)
T ss_dssp CHHH----------------------------------------HHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGT---
T ss_pred CHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---
Confidence 2222 344444444678888999999999999998763
Q ss_pred CCCCce-EEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc----ccCccCCchhhhhhHHHHHhh
Q 007454 460 TEGNAL-VKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS----LHHIWFSDKYQKEKDNVLEKT 534 (603)
Q Consensus 460 ~~g~pl-v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~----~C~~~~~~~~~~~~~~~l~~~ 534 (603)
. +++..+.. ......+.|.+... +...+.+.+.++||.++.|+ +|.+.... .
T Consensus 270 -----~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~------------~ 326 (374)
T 3uwc_A 270 -----EFIDVPVRRE-GVYHVFHIYVLRVK-----YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKS------------L 326 (374)
T ss_dssp -----TTEECCCCCT-TEECCCSSEEEEET-----THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGG------------G
T ss_pred -----CeEEeccCCC-CCceeeEEEEEEcC-----CHHHHHHHHHHCCCccccCCCCccccChhhhh------------c
Confidence 1 33332211 11122244555432 23445555567799999886 33222110 0
Q ss_pred hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
. ... ...... .....+.||+|++.++|.|||+++++.|++++++
T Consensus 327 ~-~~~-~~~~~~---~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 327 G-YQQ-GDFPMA---EKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp C-CCT-TSCHHH---HHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred C-Ccc-CCCccH---HHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 000 000000 0011258999999999999999999999998764
No 101
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.72 E-value=2.8e-16 Score=168.56 Aligned_cols=289 Identities=12% Similarity=0.012 Sum_probs=185.3
Q ss_pred HHHHHHHHHHcC------CCCCcEEEeccC-chHHHH-------------------------HHHHHHcCCEEEEEeccC
Q 007454 173 SAMKKRIMDFLN------ISENDYVYDYES-EAVEAM-------------------------IRTSEKRGARVMSAEFSW 220 (603)
Q Consensus 173 ~~aR~~Ia~~ln------a~~~e~vf~~es-~sV~~~-------------------------~~~a~~~Ga~V~~~~~~~ 220 (603)
.+.|++|+++++ +++++++++... +++..+ ...++..|+++..++++.
T Consensus 85 ~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~ 164 (437)
T 3g0t_A 85 PELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFE 164 (437)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGG
T ss_pred HHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecC
Confidence 367788888877 567788775432 122222 233344466666666652
Q ss_pred CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccC----CCCCCCC--
Q 007454 221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALG----PKDMDSF-- 290 (603)
Q Consensus 221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~----~~~m~~l-- 290 (603)
.+..++.++|++.|.. .++++++++..+|.||.++|.+. +++|+++|+++++|.++.. ++ .++
T Consensus 165 ~~~~~d~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~ 237 (437)
T 3g0t_A 165 YRGEKLREKLESYLQT-----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD--YSHPG 237 (437)
T ss_dssp GCTTHHHHHHHHHHTT-----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC--CCSTT
T ss_pred CCCccCHHHHHHHHhc-----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC--cCccc
Confidence 2335789999999942 36889999999999999999653 3478999999999999864 22 122
Q ss_pred ------CCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCc-CcC---CCCCCCceeccccccccccccccCCCCC
Q 007454 291 ------GLSL-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP-ILV---DNTSSGMVSLLPAKKQLWLTDEFSSCET 357 (603)
Q Consensus 291 ------dls~-~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~-~L~---p~~~gG~v~~~~~~~~~~~~~~~~~~~~ 357 (603)
++.. .+.++++.|++|+|| +.| +|++++++++++ .+. +...++... ..+. .. .
T Consensus 238 ~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~-----~ 303 (437)
T 3g0t_A 238 EPLYQPSVANYTDNYILALSSSKAFS--YAGQRIGVLMISGKLYEREYPDLEESFGRLRFG-----EALS--SS-----A 303 (437)
T ss_dssp SSCCCCCGGGTCSCEEEEEESTTTTS--CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHH-----HHHH--TT-----H
T ss_pred ccchhhccCCCCCcEEEEEcCccCCC--CccceeEEEEECHHHhhhhhhcccccccccchh-----HHHH--HH-----H
Confidence 4433 677899999999999 446 899999877654 321 111111000 0000 00 0
Q ss_pred CcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc--CHH
Q 007454 358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLT 435 (603)
Q Consensus 358 e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i--Gl~ 435 (603)
.. ....+.|..+..++. .+++..... .++
T Consensus 304 -------~~--~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~~~ 334 (437)
T 3g0t_A 304 -------LY--ALSSGATHSAQWGMA----------------------------------------AMLKACNDGEYNFR 334 (437)
T ss_dssp -------HH--HHHSSSCHHHHHHHH----------------------------------------HHHHHHHTTSCCHH
T ss_pred -------Hh--hhcCCCCHHHHHHHH----------------------------------------HHHhCcHhHHHHHH
Confidence 00 123344554443332 355443321 178
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe------CCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEE
Q 007454 436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIY------GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL 509 (603)
Q Consensus 436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy------gp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~l 509 (603)
.+.++.+.+.+++.+.|.++ | ++++ .| ...+..+.+.+++.+ ...+.+.+.++||.+
T Consensus 335 ~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~l~~~L~~~gi~v 397 (437)
T 3g0t_A 335 DSVIEYGRKARIMKKMFLDN------G---FNIVYDKDGNEP---LADGFYFTVGYKGMD-----SSKLIEKFVRYGMCA 397 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHTT------T---EEESSCEETTEE---CCSSSEEEEEETTCC-----HHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHc------C---CEEeccccCCCC---CceeEEEEEecCCCC-----HHHHHHHHHHcCeEE
Confidence 88999999999999999876 1 6666 23 135677888887433 334444445679999
Q ss_pred eeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 510 SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 510 r~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+.|..|... ..+.+|+|+++. |.+||+++++.|++++.+
T Consensus 398 ~~~~~~~~~----------------------------------~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 398 ITLKTTGSK----------------------------------RNEAMRICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp EESTTTTCC----------------------------------CTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred eeccccCCC----------------------------------CCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 988776321 125799999954 999999999999988753
No 102
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.72 E-value=1.3e-15 Score=161.10 Aligned_cols=303 Identities=12% Similarity=0.141 Sum_probs=197.8
Q ss_pred CCceeeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~t------l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||++++. ..++.+++++.+.+.... +.. .. + .....++.+++++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----------------~~~---~~--~---~~~~~~~l~~~la 88 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVT-----------------LTS---RA--F---HSDQLGPWYEKVA 88 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS-----------------CCC---TT--S---EETTHHHHHHHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcc-----------------ccc---cc--c---CCHHHHHHHHHHH
Confidence 457799998743 247888888776433210 000 00 0 1234568899999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHHc----------CCEEEEEeccCCc------------------------c--
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEKR----------GARVMSAEFSWPR------------------------L-- 223 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~~----------Ga~V~~~~~~~~~------------------------g-- 223 (603)
+++| +++++|... ++++...+..+... |.+|...+..+.. .
T Consensus 89 ~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (392)
T 3ruy_A 89 KLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIV 166 (392)
T ss_dssp HHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEE
T ss_pred HhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCee
Confidence 9998 667777654 34555555555433 4566654432210 0
Q ss_pred --ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCC
Q 007454 224 --RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLS 293 (603)
Q Consensus 224 --~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls 293 (603)
..+.++|+++|. +++++|.+...+|.||.++| ++.+ ++|+++|+++++|.++. .+.. +..++..
T Consensus 167 ~~~~d~~~l~~~l~------~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~ 240 (392)
T 3ruy_A 167 IPYGDLEALKAAIT------PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWD 240 (392)
T ss_dssp ECTTCHHHHHHHCC------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred eCcccHHHHHHHhc------cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhcc
Confidence 016888988886 36999999999999999999 9865 58999999999999985 2221 1223333
Q ss_pred CCCCcEEEEcccccCCCCC--CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccccc
Q 007454 294 LVRPDFLICSFYQIFGENP--SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA 371 (603)
Q Consensus 294 ~~~~Dflv~S~hK~fG~~P--~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~ 371 (603)
...+|++++| |.++ + ..+|+++++++.++.+.+...++ .
T Consensus 241 ~~~~d~~~~S--K~l~--gG~~~~G~~~~~~~~~~~~~~~~~~~-----------------------------------~ 281 (392)
T 3ruy_A 241 NVTPDMYILG--KALG--GGVFPISCAAANRDILGVFEPGSHGS-----------------------------------T 281 (392)
T ss_dssp TCCCSEEEEC--GGGG--TTTSCCEEEEECHHHHTTCCTTSSCC-----------------------------------S
T ss_pred CCCCCEEEEc--hhhh--CChhhhEEEEECHHHHhhhccCCcCC-----------------------------------C
Confidence 4568999887 9877 3 23899999887665554321111 1
Q ss_pred CCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454 372 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 451 (603)
Q Consensus 372 GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~ 451 (603)
-+.|..+.+++. ++++.+.. +.+.++.+.+.++|.+.
T Consensus 282 ~~~~~~~~~a~~----------------------------------------~~l~~~~~---~~~~~~~~~~~~~l~~~ 318 (392)
T 3ruy_A 282 FGGNPLACAVSI----------------------------------------AALEVLEE---EKLTERSLQLGEKLVGQ 318 (392)
T ss_dssp STTCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH----------------------------------------HHHHHHHh---hhHHHHHHHHHHHHHHH
Confidence 123333333322 46665543 56778889999999999
Q ss_pred HhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454 452 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 531 (603)
Q Consensus 452 L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l 531 (603)
|.++.+ +.+.... ..+.++.|.+++ ++ ..++++| .++||.++.|.
T Consensus 319 L~~~~~------~~~~~~~-----~~g~~~~~~~~~-~~----~~l~~~l-~~~gi~v~~~~------------------ 363 (392)
T 3ruy_A 319 LKEIDN------PMITEVR-----GKGLFIGIELNE-PA----RPYCEQL-KAAGLLCKETH------------------ 363 (392)
T ss_dssp HTTCCC------TTEEEEE-----EETTEEEEEESS-CS----HHHHHHH-HTTTEECCCBT------------------
T ss_pred HHHhcC------CCceEEE-----eeeeEEEEEEcc-hH----HHHHHHH-HHCCcEEecCC------------------
Confidence 988732 3343332 247889998865 32 2344444 47899887431
Q ss_pred HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
.+.||+|+++.+|.+|++++++.|++++
T Consensus 364 ----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 364 ----------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp ----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 2589999999999999999999999876
No 103
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.72 E-value=8.5e-17 Score=170.73 Aligned_cols=305 Identities=15% Similarity=0.117 Sum_probs=193.4
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-- 183 (603)
Q Consensus 107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-- 183 (603)
++.++|+.+... +.++.+.+++.+.+.... . .|+.. ....+.|+.|++++
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----------------------~--~y~~~--~g~~~lr~~la~~~~~ 93 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-----------------------V--KYTDP--RGIYELREGIAKRIGE 93 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-----------------------C--CCCCT--TCCHHHHHHHHHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHhcCC-----------------------C--CCCCC--CCCHHHHHHHHHHHHH
Confidence 457888877665 346778888765432100 0 00000 01236777777777
Q ss_pred --CC--CCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccCC-ccccCHHHHHHHHhh
Q 007454 184 --NI--SENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVS 236 (603)
Q Consensus 184 --na--~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~ 236 (603)
|+ ++++++++... +++. .....++..|+++..++.++. +..++.++|++.|..
T Consensus 94 ~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 173 (389)
T 1o4s_A 94 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG 173 (389)
T ss_dssp HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred HhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence 65 56788764321 1111 123345567899998888632 346899999998853
Q ss_pred cCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCCCC--CCCCCC----CCCcEEEEcccc
Q 007454 237 KGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKDMD--SFGLSL----VRPDFLICSFYQ 306 (603)
Q Consensus 237 ~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~m~--~ldls~----~~~Dflv~S~hK 306 (603)
++++|+++..+|.||.++| ++.+ ++|+++|+++++|.++..... . ..++.. .+.|+++.|++|
T Consensus 174 ------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-~g~~~~~~~~~~~~~~~i~~~s~sK 246 (389)
T 1o4s_A 174 ------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY-TDEFTSILDVSEGFDRIVYINGFSK 246 (389)
T ss_dssp ------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBC-SSCCCCHHHHCSSSTTEEEEEESTT
T ss_pred ------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc-CCCCCCHhhcCCCCCcEEEEeechh
Confidence 5889999999999999999 5544 578999999999999876531 1 122221 468999999999
Q ss_pred cCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhh
Q 007454 307 IFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 384 (603)
Q Consensus 307 ~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~ 384 (603)
+|| +.| +|++++++++++.+.+...+ ...++ +..+..
T Consensus 247 ~~~--~~G~r~G~l~~~~~~~~~l~~~~~~----------------------------------~~~~~-~~~~~~---- 285 (389)
T 1o4s_A 247 SHS--MTGWRVGYLISSEKVATAVSKIQSH----------------------------------TTSCI-NTVAQY---- 285 (389)
T ss_dssp TTT--CGGGCCEEEECCHHHHHHHHHHHHH----------------------------------HTCSC-CHHHHH----
T ss_pred hcC--CcccceEEEEeCHHHHHHHHHHhhh----------------------------------cccCC-CHHHHH----
Confidence 999 568 89999877654333311000 00111 211111
Q ss_pred hhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454 385 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA 464 (603)
Q Consensus 385 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p 464 (603)
.++..++. +++.+.++.+.+.++|.+.|.++ |
T Consensus 286 ---------------------------------------a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~------g-- 317 (389)
T 1o4s_A 286 ---------------------------------------AALKALEV-DNSYMVQTFKERKNFVVERLKKM------G-- 317 (389)
T ss_dssp ---------------------------------------HHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT------T--
T ss_pred ---------------------------------------HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc------C--
Confidence 12222222 47888889999999999999875 2
Q ss_pred eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454 465 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 544 (603)
Q Consensus 465 lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 544 (603)
++++.|. .+..+.+.++ .+ ..++.++|++++||.++.|..|..
T Consensus 318 -~~~~~~~----~~~~~~~~~~-~~----~~~l~~~l~~~~gi~v~~g~~f~~--------------------------- 360 (389)
T 1o4s_A 318 -VKFVEPE----GAFYLFFKVR-GD----DVKFCERLLEEKKVALVPGSAFLK--------------------------- 360 (389)
T ss_dssp -CCCCCCS----BSSEEEEECS-SC----HHHHHHHHHHHHCEECEEGGGGTC---------------------------
T ss_pred -CeeecCC----cceEEEEeCC-CC----HHHHHHHHHHHCCEEEeCchhcCC---------------------------
Confidence 3333432 2445555664 22 123455666688999987754410
Q ss_pred ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+.+|+|++ ++.+||+++++.|+++++
T Consensus 361 ---------~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 361 ---------PGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp ---------TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred ---------CCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 148999999 499999999999998874
No 104
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.72 E-value=8.7e-17 Score=171.99 Aligned_cols=147 Identities=9% Similarity=0.046 Sum_probs=107.1
Q ss_pred ccCccccccchHHHHHHHHHHHHHHHcCCCCCcEEEe-ccCchHHHHH-------------------------HHHHHcC
Q 007454 157 NLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYD-YESEAVEAMI-------------------------RTSEKRG 210 (603)
Q Consensus 157 N~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~-~es~sV~~~~-------------------------~~a~~~G 210 (603)
++...+.|+.......++.|++|++++|++ +.++. .-++++..++ ..+++.|
T Consensus 53 ~~~~~~~y~r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g 130 (392)
T 3qhx_A 53 GLRGGYEYARTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWN 130 (392)
T ss_dssp CCBTTBCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred cccCCccccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcC
Confidence 333455666666677889999999999986 44332 1112222222 2224557
Q ss_pred CEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC
Q 007454 211 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS 289 (603)
Q Consensus 211 a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ 289 (603)
.++..++++ +.++|++.|.. ++++|.+...+|.||.++|++.| ++|+++|+++++|.++..+. .
T Consensus 131 ~~~~~v~~~------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~---~ 195 (392)
T 3qhx_A 131 VEYTPVALA------DLDAVRAAIRP------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPA---L 195 (392)
T ss_dssp CEEEEECTT------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTT---T
T ss_pred cEEEEeCCC------CHHHHHHhhCC------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccc---c
Confidence 777776653 68889888863 69999999999999999999966 58999999999999987764 2
Q ss_pred CCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeC
Q 007454 290 FGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKK 322 (603)
Q Consensus 290 ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk 322 (603)
.+.-.+++|+++.|+||++| |.| .|+++.++
T Consensus 196 ~~~~~~~~di~~~S~sK~lg--~~g~~~~G~v~~~~ 229 (392)
T 3qhx_A 196 QQPLSLGADVVLHSTTKYIG--GHSDVVGGALVTND 229 (392)
T ss_dssp CCGGGGTCSEEEEETTTTTT--CSSCCCCEEEEESC
T ss_pred CChHHhCCcEEEEcCccccC--CCCCceEEEEEECc
Confidence 23335689999999999999 545 78777764
No 105
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.72 E-value=6.2e-17 Score=171.66 Aligned_cols=308 Identities=14% Similarity=0.090 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEec-cCchHH----------------------------HHHHHHHHcCCEEEEEeccC
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDY-ESEAVE----------------------------AMIRTSEKRGARVMSAEFSW 220 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~-es~sV~----------------------------~~~~~a~~~Ga~V~~~~~~~ 220 (603)
...++.|++|++++|++ +.+|.. -++++. .....++..|++++.+++++
T Consensus 34 ~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~ 111 (390)
T 3b8x_A 34 EYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI 111 (390)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT
T ss_pred hHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCc
Confidence 45668888888888875 333321 111111 12233445688899998875
Q ss_pred CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC--
Q 007454 221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP-- 297 (603)
Q Consensus 221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~-- 297 (603)
.++.++.++|++.|.. ++++|+++ |.+|...|++.| ++|+++|+++++|++|..+. .. +...++.
T Consensus 112 ~~~~~d~~~l~~~i~~------~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~-~~~~~g~~~ 179 (390)
T 3b8x_A 112 NTLNIDIESLKEAVTD------STKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGA--TF-NNKCAGTFG 179 (390)
T ss_dssp TTCSBCHHHHHHHCCT------TEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTC--EE-TTEETTSSS
T ss_pred cccCcCHHHHHHHhCc------CCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccC--EE-CCccccccc
Confidence 4588999999999863 58888886 479999999966 58999999999999999876 22 4444444
Q ss_pred cEEEEc---ccccCCCCCCceEEEEEeC-CCCcCcCCCCCCCceecccc------ccccccccccCCCCCCcccCccccc
Q 007454 298 DFLICS---FYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPA------KKQLWLTDEFSSCETEPEQTSKSKQ 367 (603)
Q Consensus 298 Dflv~S---~hK~fG~~P~G~G~L~vkk-~~~~~L~p~~~gG~v~~~~~------~~~~~~~~~~~~~~~e~~~~~~~~~ 367 (603)
|+.++| +||+.+ |.| |+++.++ .+.+.+++...+|....... ....+...... .++ ...
T Consensus 180 ~~~~~s~~~~k~~~~--g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~g- 248 (390)
T 3b8x_A 180 LMGTFSSFYSNHIAT--MEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESF--KFV-----LPG- 248 (390)
T ss_dssp SEEEEECCTTSSSCS--SSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSS--CBC-----SCC-
T ss_pred ceEEEEccCCCCCcc--CCc-eEEEeCCHHHHHHHHHHHhcCCCcccccccccccccccccccccc--cee-----ccc-
Confidence 777765 467655 567 8888876 44333433222231000000 00000000000 000 000
Q ss_pred ccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007454 368 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 447 (603)
Q Consensus 368 ~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~ 447 (603)
+..+|.++.++++++ +++. ++.+.++.+.+.++
T Consensus 249 -~~~~~~~~~aa~~l~-----------------------------------------~l~~-----l~~~~~~~~~~~~~ 281 (390)
T 3b8x_A 249 -YNVRPLEMSGAIGIE-----------------------------------------QLKK-----LPRFISVRRKNAEY 281 (390)
T ss_dssp -CBCCCCHHHHHHHHH-----------------------------------------HHHH-----HHHHHHHHHHHHHH
T ss_pred -cccCcCHHHHHHHHH-----------------------------------------HHHH-----HHHHHHHHHHHHHH
Confidence 123466666665543 3433 45778888999999
Q ss_pred HHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCE--EEEEEccCCCCccCHHHHHHHHhcCCcEEee---CcccCc-cCCc
Q 007454 448 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA--LAFNVFDWKREKIEPVLVQKLADRENISLSY---GSLHHI-WFSD 521 (603)
Q Consensus 448 L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~i--vsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~---G~~C~~-~~~~ 521 (603)
|.+.|.+++ .++++++. .+.+. +.+.+.+..| +..+.+.+.+.++||.++. |++|.. +...
T Consensus 282 l~~~L~~~~--------~~~~~~~~---~~~~~~~~~i~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~ 348 (390)
T 3b8x_A 282 FLDKFKDHP--------YLDVQQET---GESSWFGFSFIIKKDSG--VIRKQLVENLNSAGIECRPIVTGNFLKNTDVLK 348 (390)
T ss_dssp HHHHHTTCS--------SEEECCCC---SBCCCCEEEEEECTTSC--CCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHT
T ss_pred HHHHhcCCC--------CcccCCCC---CCcccEEEEEEecCcCc--ccHHHHHHHHHHCCCCeeeecCCchhhcchhhh
Confidence 999998752 37787653 23344 4445553112 3445566666678999998 778866 4321
Q ss_pred hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 007454 522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 577 (603)
Q Consensus 522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l 577 (603)
.. . ...+.+ |... .....+.||+|++.++|.|||+++++.|
T Consensus 349 ~~-~--~~~~~~---~~~~---------~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 349 YF-D--YTVHNN---VDNA---------EYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TC-E--EEESSC---CHHH---------HHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred cC-C--CCCcCC---ChHH---------HHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 10 0 000000 0000 0112258999999999999999999876
No 106
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.72 E-value=1.1e-16 Score=168.10 Aligned_cols=270 Identities=10% Similarity=0.027 Sum_probs=180.4
Q ss_pred HHHHHHHHHcC------CCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCCcccc
Q 007454 174 AMKKRIMDFLN------ISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWPRLRI 225 (603)
Q Consensus 174 ~aR~~Ia~~ln------a~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i 225 (603)
+.|+.|+++++ +++++++++... +++ ......++..|+++..+++++ + +
T Consensus 62 ~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~ 138 (377)
T 3fdb_A 62 LLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATG-G--I 138 (377)
T ss_dssp CHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT-S--C
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC-C--C
Confidence 57788888887 788888775321 111 122344566788899988874 3 8
Q ss_pred CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC----C-CCCCCCCCCC--
Q 007454 226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG----P-KDMDSFGLSL-- 294 (603)
Q Consensus 226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~----~-~~m~~ldls~-- 294 (603)
+.++|++.|.. ++++++++..+|.||.++|.+.+ ++|+++|+++++|.++.. + + ...++..
T Consensus 139 d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~ 210 (377)
T 3fdb_A 139 NLHDVEKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH--TVAAGVSDT 210 (377)
T ss_dssp CHHHHHHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCC--CCGGGSCHH
T ss_pred CHHHHHHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCC--CcccHHHcc
Confidence 99999999974 47899999999999999987643 358899999999998765 3 2 1223322
Q ss_pred -CCCcEEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454 295 -VRPDFLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 370 (603)
Q Consensus 295 -~~~Dflv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e 370 (603)
.+.++++.|++|.|| +.| +|++++. +.+++.+.... . ..
T Consensus 211 ~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~~--------------------------------~---~~ 253 (377)
T 3fdb_A 211 AASVCITITAPSKAWN--IAGLKCAQIIFSNPSDAEHWQQLS--------------------------------P---VI 253 (377)
T ss_dssp HHHHEEEEECSTTTTT--CGGGCCEEEECCSHHHHHHHHHSC--------------------------------H---HH
T ss_pred CCCcEEEEEeChHhcc--CcchhheEEEeCCHHHHHHHHHHH--------------------------------H---hh
Confidence 344589999999998 446 6777763 33332222100 0 11
Q ss_pred cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454 371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~ 450 (603)
.++.|..+..++. ++++... -.++.+.++.+.+.++|.+
T Consensus 254 ~~~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~ 292 (377)
T 3fdb_A 254 KDGASTLGLIAAE----------------------------------------AAYRYGT-DFLNQEVAYLKNNHDFLLH 292 (377)
T ss_dssp HCCCCHHHHHHHH----------------------------------------HHHHHCH-HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH----------------------------------------HHHhccH-HHHHHHHHHHHHHHHHHHH
Confidence 2344444443322 3443211 1256778888999999999
Q ss_pred HHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454 451 ALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 529 (603)
Q Consensus 451 ~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~ 529 (603)
.|.+ ++ .++++.|. .+.++.+++++.. ++.++++++++++||.++.|..|...
T Consensus 293 ~L~~~~~--------~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~----------- 346 (377)
T 3fdb_A 293 EIPKRIP--------GAKITPMQ----ATYLMWIDFRDTT---IEGSPSEFFIEKAKVAMNDGAWFGED----------- 346 (377)
T ss_dssp HHHHHST--------TCEECCCS----BCSEEEEECTTSC---CCSCHHHHHHHHHCEECEEGGGGCGG-----------
T ss_pred HHHhhCC--------CceEecCC----eeEEEEEECcccC---CCHHHHHHHHHhCCEEecCChhccCC-----------
Confidence 9987 42 26676653 3445567776521 12345778888889999999777431
Q ss_pred HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|++ ++.|||+++++.|++++++
T Consensus 347 -----------------------~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 347 -----------------------GTGFCRLNFA--TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp -----------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred -----------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 1268999999 4899999999999988753
No 107
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.72 E-value=1.1e-16 Score=170.76 Aligned_cols=275 Identities=12% Similarity=0.071 Sum_probs=176.3
Q ss_pred HHHHHHHHHHc------CCCCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccC-Ccc
Q 007454 173 SAMKKRIMDFL------NISENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSW-PRL 223 (603)
Q Consensus 173 ~~aR~~Ia~~l------na~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~-~~g 223 (603)
.+.|+.|++++ ++++++++++... ++ ...+...++..|+++..++.+. .+.
T Consensus 81 ~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 160 (406)
T 1xi9_A 81 PELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDW 160 (406)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTS
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCC
Confidence 36777777777 4667788765321 11 1223344566799999888863 234
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCC-CCCCCCCC--CC
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKD-MDSFGLSL--VR 296 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~-m~~ldls~--~~ 296 (603)
.++.++|++.|.. ++++|.++..+|.||.++| ++.+ ++|+++|+++++|.++....- -....+.. .+
T Consensus 161 ~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 234 (406)
T 1xi9_A 161 QPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD 234 (406)
T ss_dssp EECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS
T ss_pred cCCHHHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCC
Confidence 6899999998863 5889999999999999998 5534 578999999999998765320 01122222 24
Q ss_pred C-cEEEEcccccCCCCCCc--eEEEE--EeC----CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccc
Q 007454 297 P-DFLICSFYQIFGENPSG--FGCLF--VKK----STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ 367 (603)
Q Consensus 297 ~-Dflv~S~hK~fG~~P~G--~G~L~--vkk----~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 367 (603)
. |+++.|++|+|| +.| +|+++ .++ ++++.+... ..
T Consensus 235 ~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~l~~~l~~~---------------------------------~~- 278 (406)
T 1xi9_A 235 VPVIVMNGLSKVYF--ATGWRLGYMYFVDPENKLSEVREAIDRL---------------------------------AR- 278 (406)
T ss_dssp SCEEEEEESTTTTC--CGGGCCEEEEEECTTCTTHHHHHHHHHH---------------------------------HH-
T ss_pred ceEEEEeccccccC--CCccEEEEEEEecCchhHHHHHHHHHHH---------------------------------HH-
Confidence 5 899999999999 558 89998 555 332222100 00
Q ss_pred ccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007454 368 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW 447 (603)
Q Consensus 368 ~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~ 447 (603)
.. ++.|..+..++. ++++...+ +++.+.++.+.+.++
T Consensus 279 -~~-~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~ 315 (406)
T 1xi9_A 279 -IR-LCPNTPAQFAAI----------------------------------------AGLTGPMD-YLKEYMKKLKERRDY 315 (406)
T ss_dssp -HT-CCSCSHHHHHHH----------------------------------------HHHHSCCH-HHHHHHHHHHHHHHH
T ss_pred -hh-cCCCHHHHHHHH----------------------------------------HHHhCCcH-HHHHHHHHHHHHHHH
Confidence 11 333433332222 34431111 256777888899999
Q ss_pred HHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE-EEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhh
Q 007454 448 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA-FNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQK 525 (603)
Q Consensus 448 L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs-Fnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~ 525 (603)
+.+.|.+++ .++++.|. ++.+. +.++...+ .+. +++++|++++||.++.|..|..
T Consensus 316 l~~~L~~~~--------~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~-------- 372 (406)
T 1xi9_A 316 IYKRLNEIP--------GISTTKPQ-----GAFYIFPKIEVGPW--KNDKEFVLDVLHNAHVLFVHGSGFGE-------- 372 (406)
T ss_dssp HHHHHHTST--------TEECCCCC-----BSSEECCEECSCSC--SSHHHHHHHHHHHHCEECEEGGGGCG--------
T ss_pred HHHHHHhCC--------CCeeecCC-----eeEEEEEecCccCC--CCHHHHHHHHHHhCCEEEeCchhcCC--------
Confidence 999998752 26665542 34333 35542101 122 3455666688999998866531
Q ss_pred hhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 526 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 526 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+.||+|++ ++.+||+++++.|+++++.
T Consensus 373 --------------------------~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 373 --------------------------YGAGHFRAVFL--PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp --------------------------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 01258999998 9999999999999998864
No 108
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.72 E-value=1.4e-16 Score=171.01 Aligned_cols=277 Identities=12% Similarity=0.133 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHcC--CCCCcEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEeccCCcc-
Q 007454 169 SGLESAMKKRIMDFLN--ISENDYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEFSWPRL- 223 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~ln--a~~~e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g- 223 (603)
.++.+++++.+++.+| +++++++|+.... ++. .....++..|.++..+++++.++
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~ 178 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGR 178 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCC
Confidence 4677788888888888 6778888764321 222 22334556788888888763333
Q ss_pred -ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCC
Q 007454 224 -RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALG----PKDMDSFGLSL 294 (603)
Q Consensus 224 -~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~ 294 (603)
.++.++|++.|.. +++++|.++..+|.||.++|. +.+ ++|+++|+++++|.++.. ++ ....+..
T Consensus 179 ~~~d~~~le~~i~~-----~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~ 251 (421)
T 3l8a_A 179 FEIDFEQLEKDIID-----NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN--THHSLNT 251 (421)
T ss_dssp EECCHHHHHHHHHH-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGG
T ss_pred eeeCHHHHHHHhhc-----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCccHHH
Confidence 5899999999973 268999999999999999655 433 468999999999999765 32 1122222
Q ss_pred -----CCCcEEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccc
Q 007454 295 -----VRPDFLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 366 (603)
Q Consensus 295 -----~~~Dflv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 366 (603)
.+.++++.|++|.|| +.| +|+++++ +++.+.+.+.. ..
T Consensus 252 ~~~~~~~~~i~~~s~sK~~g--~~G~~~G~~~~~~~~l~~~~~~~~--------------------------------~~ 297 (421)
T 3l8a_A 252 LDASYKDFTIILSSATKTFN--IAGTKNSFAIIQNESLRRKFQYRQ--------------------------------LA 297 (421)
T ss_dssp SCTTGGGTEEEEECSHHHHT--CGGGCCEEEECCSHHHHHHHHHHH--------------------------------HH
T ss_pred cCchhcCcEEEEEeChhhcc--CchhheEeEEcCCHHHHHHHHHHH--------------------------------Hh
Confidence 345599999999998 446 4888887 44433232100 00
Q ss_pred cccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007454 367 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 446 (603)
Q Consensus 367 ~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~ 446 (603)
...+++|..+++++. ++++..+. .++.+.++.+.+.+
T Consensus 298 --~~~~~~n~~~~~a~~----------------------------------------aal~~~~~-~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 298 --NNQHEVPTVGMIATQ----------------------------------------AAFQYGKP-WLEELKTVIEGNIK 334 (421)
T ss_dssp --TTCSCCCHHHHHHHH----------------------------------------HHHHHCHH-HHHHHHHHHHHHHH
T ss_pred --cccCCCCHHHHHHHH----------------------------------------HHHhccHH-HHHHHHHHHHHHHH
Confidence 123355666554443 34443222 25777888899999
Q ss_pred HHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE-EEEcc--CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchh
Q 007454 447 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA-FNVFD--WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY 523 (603)
Q Consensus 447 ~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs-Fnv~~--~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~ 523 (603)
+|.+.|.+++ .++++.|. +..+. +.+.. .++ .+++++|++++||.++.|..|..
T Consensus 335 ~l~~~L~~~~--------~i~~~~~~-----~~~~~~v~~~~~~~~~----~~l~~~l~~~~gi~v~~g~~f~~------ 391 (421)
T 3l8a_A 335 LVIKELEAKT--------KIKVMEPE-----GTYLVWLDFSAYAIAQ----PQLSEKLQNEAKVVLNDGAHFGK------ 391 (421)
T ss_dssp HHHHHHHHHC--------SCEEECCS-----BSSEEEEECGGGTCCT----THHHHHHHHTTCEECEEGGGGCG------
T ss_pred HHHHHHHhCC--------CceEeCCC-----eeEEEEEeccccCCCH----HHHHHHHHHhCCEEEECchhhCC------
Confidence 9999998752 26666653 33333 66654 232 24566677788999999877632
Q ss_pred hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+.+.||+|++ ++.+||+++++.|++.++
T Consensus 392 ----------------------------~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 392 ----------------------------EGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ----------------------------GGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred ----------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 11369999999 699999999999998764
No 109
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.72 E-value=6.1e-16 Score=165.04 Aligned_cols=321 Identities=13% Similarity=0.071 Sum_probs=201.7
Q ss_pred CCceeeecCC-----CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFG-----IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMD 181 (603)
Q Consensus 107 ~~~vYLDyaa-----~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~ 181 (603)
.+.++|+.+. ..+.++.+++++.+.+.... ...|+. .....+.|++|++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~------------------------~~~y~~--~~~~~~lr~~la~ 86 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE------------------------CNGYFP--TVGSPEAREAVAT 86 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC------------------------SSSCCC--TTCCHHHHHHHHH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc------------------------cCCcCC--CCCCHHHHHHHHH
Confidence 3568888775 35678888888765432100 000110 0112478888888
Q ss_pred HcC------------CCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCC-ccccC
Q 007454 182 FLN------------ISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWP-RLRIN 226 (603)
Q Consensus 182 ~ln------------a~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~-~g~i~ 226 (603)
+++ +++++++++... +++ ......++..|+++..++++.. +..++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 166 (416)
T 1bw0_A 87 WWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEAD 166 (416)
T ss_dssp HHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEEC
T ss_pred HHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCC
Confidence 888 777888765321 111 1123445667899888887632 24689
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CC----CCCCC-CCC
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PK----DMDSF-GLS 293 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~----~m~~l-dls 293 (603)
.++|++.|.. +++++++...+|.||.++| ++.+ ++|+++|+++++|.++.. ++ .+.++ .+.
T Consensus 167 ~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 240 (416)
T 1bw0_A 167 LDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE 240 (416)
T ss_dssp HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred HHHHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc
Confidence 9999998863 5789999999999999999 6644 578999999999998765 32 11111 122
Q ss_pred CCCCcEEEEcccccCCCCCCc--eEEEEEeCC--CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454 294 LVRPDFLICSFYQIFGENPSG--FGCLFVKKS--TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 369 (603)
Q Consensus 294 ~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~--~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 369 (603)
....++++.|++|+||. .| +|++++++. .++.+... . . ... .
T Consensus 241 ~~~~~i~~~s~sK~~~~--~Glr~G~~~~~~~~~~~~~~~~~----~--------~-------------------~~~-~ 286 (416)
T 1bw0_A 241 TTVPRVILGGTAKNLVV--PGWRLGWLLYVDPHGNGPSFLEG----L--------K-------------------RVG-M 286 (416)
T ss_dssp CSCCEEEEEESTTTTSC--GGGCCEEEEEECTTCSCHHHHHH----H--------H-------------------HHH-H
T ss_pred CCCcEEEEecchhhCCC--CCceEEEEEeeCchhhHHHHHHH----H--------H-------------------HHh-c
Confidence 22335788899999984 36 899999874 43222210 0 0 000 0
Q ss_pred ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007454 370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 449 (603)
Q Consensus 370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~ 449 (603)
..+++|..+..++. ++++....-+++.+.++.+.+.++|.
T Consensus 287 ~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~ 326 (416)
T 1bw0_A 287 LVCGPCTVVQAALG----------------------------------------EALLNTPQEHLDQIVAKIEESAMYLY 326 (416)
T ss_dssp HHTCSCHHHHHHHH----------------------------------------HHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHH----------------------------------------HHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 12344544443332 34442112246777888899999999
Q ss_pred HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC-CCccC-HHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454 450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK-REKIE-PVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 527 (603)
Q Consensus 450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~-g~~v~-~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~ 527 (603)
+.|.+++ .++++.|. .+..+.+.++... ....+ ..++++|++++||.++.|..|..
T Consensus 327 ~~L~~~~--------g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---------- 384 (416)
T 1bw0_A 327 NHIGECI--------GLAPTMPR----GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA---------- 384 (416)
T ss_dssp HHHTTST--------TEEECCCC----BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC----------
T ss_pred HHHHhCC--------CCcccCCC----eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC----------
Confidence 9998752 26776652 3666777775310 00012 23456676788999998755420
Q ss_pred HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.+|+|++ ++.+++++.++.|.+++.+
T Consensus 385 --------------------------~~~iRis~~--~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 385 --------------------------PGFTRLTTT--RPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp --------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 258999996 6899999999999988764
No 110
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.71 E-value=1.6e-16 Score=183.91 Aligned_cols=298 Identities=11% Similarity=0.026 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEec-------------------------cCchHHHHHHHHHHcCCEEEEEeccCC---
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDY-------------------------ESEAVEAMIRTSEKRGARVMSAEFSWP--- 221 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~-------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~--- 221 (603)
..+.+.++.+++++|++ ..+++.. +|.++ ...++..|+++++++.++.
T Consensus 205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~---~~~~~~~G~~~v~v~~~~~~~g 280 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSI---EQGLMLTGAKPVYMVPSRNRYG 280 (755)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHH---HHHHHHHCCEEEEECCCBCTTS
T ss_pred cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHH---HHHHHHcCCEEEEEeCCCCccc
Confidence 45678999999999986 3454321 22232 2334556999999887532
Q ss_pred -cccc-----CHHHHHHHHhhcCC----CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCC
Q 007454 222 -RLRI-----NSEKLRKMVVSKGK----KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSF 290 (603)
Q Consensus 222 -~g~i-----~~~~L~~~l~~~~~----~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~l 290 (603)
.+.+ +.++|+++|....+ ...+++++++.+ .|.+|.++|++.| ++|+++|++|++|+++.+.....+.
T Consensus 281 ~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~-pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~ 359 (755)
T 2vyc_A 281 IIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTN-CTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPI 359 (755)
T ss_dssp CBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEES-SCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGG
T ss_pred cccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEEC-CCCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcc
Confidence 1346 99999999975211 122345888887 4789999999966 5899999999999998642100111
Q ss_pred --CCCC-CC--CcE------EEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCc
Q 007454 291 --GLSL-VR--PDF------LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 359 (603)
Q Consensus 291 --dls~-~~--~Df------lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 359 (603)
+.+. .+ +|+ ++.|+||++++ |.|.|+++++++.. .+... . + ..
T Consensus 360 ~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~-~i~~~-------------~-~--~~-------- 413 (755)
T 2vyc_A 360 YADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRG-AINFS-------------R-F--NQ-------- 413 (755)
T ss_dssp GTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBT-CCCHH-------------H-H--HH--------
T ss_pred cCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCccc-ccCHH-------------H-H--HH--------
Confidence 1222 34 687 99999999886 88999999988710 01100 0 0 00
Q ss_pred ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454 360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 439 (603)
Q Consensus 360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~ 439 (603)
.... ++.+|+++.+++++. .|++++...|.....+
T Consensus 414 ---~~~~--~~s~sp~~~~iaal~----------------------------------------aA~~~l~~~gg~~~~~ 448 (755)
T 2vyc_A 414 ---AYMM--HATTSPLYAICASND----------------------------------------VAVSMMDGNSGLSLTQ 448 (755)
T ss_dssp ---HHHH--TSCSSCCHHHHHHHH----------------------------------------HHHHHHSTHHHHHHHH
T ss_pred ---HHHH--hCCCCHHHHHHHHHH----------------------------------------HHHHHHHhhhHHHHHH
Confidence 0012 468999999988876 5777766554566778
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCCCCceEEEeCCCCCC----------------------------------------C--
Q 007454 440 RGRCLINWLVNALMKLQHP-NTEGNALVKIYGPKIRF----------------------------------------D-- 476 (603)
Q Consensus 440 r~~~L~~~L~~~L~~L~h~-~~~g~plv~Iygp~~~~----------------------------------------~-- 476 (603)
+...++++++++|.++... ...+.-.+++|+|.... .
T Consensus 449 ~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 528 (755)
T 2vyc_A 449 EVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNW 528 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTS
T ss_pred HHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCc
Confidence 8889999999999876310 00001126777764210 0
Q ss_pred ---CCCEEEEEEcc--CCCC----ccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccc
Q 007454 477 ---RGPALAFNVFD--WKRE----KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRK 547 (603)
Q Consensus 477 ---rg~ivsFnv~~--~~g~----~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 547 (603)
-+..|+|++++ .+|+ -++...+.+.++++||.+.-
T Consensus 529 ~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~------------------------------------ 572 (755)
T 2vyc_A 529 SMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTR------------------------------------ 572 (755)
T ss_dssp EEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSE------------------------------------
T ss_pred cccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEee------------------------------------
Confidence 13588999985 4452 25666777777778887531
Q ss_pred cCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 548 DKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 548 ~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+.||+++++.+|.+||++|+++|.+|...
T Consensus 573 ----~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 573 ----TTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp ----ECSSEEEEECCTTCCTTTTHHHHHHHHHHHHH
T ss_pred ----cCCCeEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 11368999999999999999999999998643
No 111
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.71 E-value=4.1e-16 Score=167.29 Aligned_cols=324 Identities=10% Similarity=0.016 Sum_probs=202.8
Q ss_pred CceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc---
Q 007454 108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--- 183 (603)
Q Consensus 108 ~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l--- 183 (603)
+.|+|+++... ..++.+++++.+.+... + + ....|+.. .-..+.|++|++++
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---------~------------~-~~~~y~~~--~g~~~l~~~la~~l~~~ 93 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSP---------D------------P-LANQYTRG--FGHPRLVQALSKLYSQL 93 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCS---------C------------G-GGGSCCCS--SCCHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcc---------c------------c-CccCCCCC--CCcHHHHHHHHHHHHHH
Confidence 46888887665 35678888876643210 0 0 00011110 00135666666665
Q ss_pred -C--CCCC-cEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCC---------ccccCHH
Q 007454 184 -N--ISEN-DYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWP---------RLRINSE 228 (603)
Q Consensus 184 -n--a~~~-e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~---------~g~i~~~ 228 (603)
| ++++ +++|+... +++.. ....++..|+++..++.++. ++.++.+
T Consensus 94 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (429)
T 1yiz_A 94 VDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNN 173 (429)
T ss_dssp HTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHH
T ss_pred hCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHH
Confidence 7 5677 88775421 12221 12334567888888888743 3468999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCC-CCC-CCCCc
Q 007454 229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSF-GLS-LVRPD 298 (603)
Q Consensus 229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~l-dls-~~~~D 298 (603)
+|++.|.. ++++|.+...+|.||.++| ++.+ ++|+++|+++++|.++.. +....++ .+. ..+.|
T Consensus 174 ~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 247 (429)
T 1yiz_A 174 ELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERT 247 (429)
T ss_dssp HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGE
T ss_pred HHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCce
Confidence 99998852 6899999999999999997 5534 578999999999999764 2211122 232 35789
Q ss_pred EEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454 299 FLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 376 (603)
Q Consensus 299 flv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~ 376 (603)
+++.|++|+|| +.| +|++++++++++.+.... . ....+.|.
T Consensus 248 ~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~--------------------------------~---~~~~~~~~ 290 (429)
T 1yiz_A 248 ITIGSAGKTFS--LTGWKIGWAYGPEALLKNLQMVH--------------------------------Q---NCVYTCAT 290 (429)
T ss_dssp EEEEEHHHHHT--CGGGCCEEEESCHHHHHHHHHHH--------------------------------H---TTTCCCCH
T ss_pred EEEecchhccC--CCCcceEEEEeCHHHHHHHHHHH--------------------------------h---hcccCCCh
Confidence 99999999999 668 999998876544332100 0 01223333
Q ss_pred hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHH-----HH-hcCHHHHHHHHHHHHHHHHH
Q 007454 377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ-----VD-SLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~-----~~-~iGl~~i~~r~~~L~~~L~~ 450 (603)
....++. ++|+. .. .-.++++.++.+.+.++|.+
T Consensus 291 ~~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (429)
T 1yiz_A 291 PIQEAIA----------------------------------------VGFETELKRLKSPECYFNSISGELMAKRDYMAS 330 (429)
T ss_dssp HHHHHHH----------------------------------------HHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------------------HHHhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3332222 34443 10 11267788888999999999
Q ss_pred HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCC--------CccCH-HHHHHHHhcCCcEEeeCcccCccCCc
Q 007454 451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR--------EKIEP-VLVQKLADRENISLSYGSLHHIWFSD 521 (603)
Q Consensus 451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g--------~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~ 521 (603)
.|.++ | ++++.|. .+..+.+.+++... ...+. .++++|++++||.++.|..|.....
T Consensus 331 ~L~~~------g---~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~- 396 (429)
T 1yiz_A 331 FLAEV------G---MNPTVPQ----GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN- 396 (429)
T ss_dssp HHHHH------T---CEEEECS----BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGG-
T ss_pred HHHhC------C---CcccCCC----cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcc-
Confidence 99875 2 4455442 36688888875310 00222 3455677789999998865532100
Q ss_pred hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.....+.||+|++ ++.+||+++++.|+++++
T Consensus 397 ----------------------------~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 397 ----------------------------KHLGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp ----------------------------GGGTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred ----------------------------cCCCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 0011368999999 489999999999998865
No 112
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.71 E-value=2.3e-15 Score=158.42 Aligned_cols=262 Identities=9% Similarity=0.048 Sum_probs=176.7
Q ss_pred HHHHHHHHHH------cCCCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCCccc
Q 007454 173 SAMKKRIMDF------LNISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWPRLR 224 (603)
Q Consensus 173 ~~aR~~Ia~~------lna~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~ 224 (603)
.+.|++|+++ +++++++++++... +++ ......++..|+++..++.+ .+..
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~-~~~~ 150 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG-ADFR 150 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC-TTSS
T ss_pred HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC-cCCC
Confidence 3688888888 67778888775321 111 12233456678999988876 3557
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC-CCCCCC-CCCC-CcEE
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD-MDSFGL-SLVR-PDFL 300 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~-m~~ldl-s~~~-~Dfl 300 (603)
++.++|++.+... ++++|.++..+|.||.++|++.+ ++++..++++++|.++..... ...+++ ...+ .+++
T Consensus 151 ~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~ 225 (369)
T 3cq5_A 151 IDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVV 225 (369)
T ss_dssp CCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEE
T ss_pred CCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEE
Confidence 8999999998741 47888899999999999999966 478888999999999876541 011332 2345 6799
Q ss_pred EEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454 301 ICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 378 (603)
Q Consensus 301 v~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g 378 (603)
+.|++|+|| +.| +|++++++++++.+.... ...++|..+
T Consensus 226 ~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~-------------------------------------~~~~~~~~~ 266 (369)
T 3cq5_A 226 SRTMSKAFD--FAGGRLGYFVANPAFIDAVMLVR-------------------------------------LPYHLSALS 266 (369)
T ss_dssp EEESSSTTS--CGGGCCEEEEECTHHHHHHHTTS-------------------------------------CTTCSCHHH
T ss_pred EEechHhcC--CcccceEEEEeCHHHHHHHHHcC-------------------------------------CCCCCCHHH
Confidence 999999998 447 699999876544333210 011233333
Q ss_pred hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454 379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP 458 (603)
Q Consensus 379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~ 458 (603)
..++. ++++..+ .++.+.++.+.++++|.+.|.++
T Consensus 267 ~~a~~----------------------------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~--- 301 (369)
T 3cq5_A 267 QAAAI----------------------------------------VALRHSA--DTLGTVEKLSVERVRVAARLEEL--- 301 (369)
T ss_dssp HHHHH----------------------------------------HHHHTHH--HHHTHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHH----------------------------------------HHhcCHH--HHHHHHHHHHHHHHHHHHHHHhC---
Confidence 22221 3443211 25667778888999999999874
Q ss_pred CCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454 459 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA 538 (603)
Q Consensus 459 ~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~ 538 (603)
| ++++.+ .++.+.|.++ . +...+.+.+.++||.++.| +
T Consensus 302 ---g---~~~~~~-----~~~~~~~~~~-~-----~~~~l~~~l~~~gi~v~~~-----~-------------------- 339 (369)
T 3cq5_A 302 ---G---YAVVPS-----ESNFVFFGDF-S-----DQHAAWQAFLDRGVLIRDV-----G-------------------- 339 (369)
T ss_dssp ---T---CEEECC-----SSSEEEEECC-S-----SHHHHHHHHHHTTEECBCC-----S--------------------
T ss_pred ---C---CEECCC-----CCeEEEEECC-C-----CHHHHHHHHHHCCEEEEEC-----C--------------------
Confidence 2 455532 4678888775 1 2334444456789998765 0
Q ss_pred ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
. .+.+|+|++ |.+|++++++.|+++++.
T Consensus 340 -------------~-~~~iRis~~---~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 340 -------------I-AGHLRTTIG---VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp -------------C-TTEEEEECC---CHHHHHHHHHHHHHHHTT
T ss_pred -------------C-CCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 0 158999998 899999999999988753
No 113
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.71 E-value=1.5e-16 Score=169.47 Aligned_cols=307 Identities=11% Similarity=0.026 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeccC-chHHHH----------------------HHHHHHcCCEEEEEeccCCccccC
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYES-EAVEAM----------------------IRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~----------------------~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
....+.|++|++++|+ +++++.... +++..+ ...++..|+++..++++ .++.++
T Consensus 32 ~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d 108 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD-ETYNID 108 (394)
T ss_dssp HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBC-TTSSBC
T ss_pred hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEEeC-CCCCcC
Confidence 4567899999999987 456554221 111111 12334568899999887 578899
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCC---CCCCCcEEEE
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGL---SLVRPDFLIC 302 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl---s~~~~Dflv~ 302 (603)
.++|++.|...+ .++++|.+.+ +||...|++.+ ++|+++|+++++|+++..+. ...+. +..++|++++
T Consensus 109 ~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~~~~~~~s~ 180 (394)
T 1o69_A 109 VDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGS--FYKNKALGTFGEFGVYSY 180 (394)
T ss_dssp HHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC--EETTEETTSSSSEEEEEC
T ss_pred HHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccc--eeCCcccccccCcEEEEE
Confidence 999999997421 1478888764 89999999865 58999999999999998654 12222 1236899999
Q ss_pred cccccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454 303 SFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS 381 (603)
Q Consensus 303 S~hK~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g 381 (603)
|.||.+| |.++|+++++ +++++.+.+...+|... .+. + . ..+ .+ ++.||+++.++++
T Consensus 181 s~~K~l~--~~~~G~~~~~~~~l~~~l~~~~~~~~~~-~~~----~--~-----~~~------~g--~~~~~~~~~aa~~ 238 (394)
T 1o69_A 181 NGNKIIT--TSGGGMLIGKNKEKIEKARFYSTQAREN-CLH----Y--E-----HLD------YG--YNYRLSNVLGAIG 238 (394)
T ss_dssp CTTSSSC--CSSCEEEEESCHHHHHHHHHHTBTCCCS-SSS----C--C-----CSS------CC--CBCBCCHHHHHHH
T ss_pred eCCccCC--CCCceEEEECCHHHHHHHHHHHHhcccc-Ccc----c--c-----ccc------cC--cccCcCHHHHHHH
Confidence 9999999 7799999996 56555454321112110 000 0 0 000 11 4567877777665
Q ss_pred hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454 382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE 461 (603)
Q Consensus 382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~ 461 (603)
+. .+++ ++.+.++.+.+.+++.+.|.++
T Consensus 239 l~-----------------------------------------~l~~-----l~~~~~~~~~~~~~l~~~L~~~------ 266 (394)
T 1o69_A 239 VA-----------------------------------------QMEV-----LEQRVLKKREIYEWYKEFLGEY------ 266 (394)
T ss_dssp HH-----------------------------------------HHTT-----HHHHHHHHHHHHHHHHHHHTTT------
T ss_pred HH-----------------------------------------HHHH-----HHHHHHHHHHHHHHHHHHhccc------
Confidence 43 2333 4456678889999999999753
Q ss_pred CCceEEEeCCCCCCCCC--CEEEEEEccCC---------------CC--ccCHHHHHHHHhcCCcEEeeCcccCccCCch
Q 007454 462 GNALVKIYGPKIRFDRG--PALAFNVFDWK---------------RE--KIEPVLVQKLADRENISLSYGSLHHIWFSDK 522 (603)
Q Consensus 462 g~plv~Iygp~~~~~rg--~ivsFnv~~~~---------------g~--~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~ 522 (603)
++++++.. ..++ .++.|.+++.. |. .++...+.+.+.++||.+|.|..|.... +
T Consensus 267 ----~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~--p 339 (394)
T 1o69_A 267 ----FSFLDELE-NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQ--E 339 (394)
T ss_dssp ----EECCCCCT-TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGC--G
T ss_pred ----ccccCCCC-CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccc--h
Confidence 45555421 1122 36888886321 00 1234455555567899999996553210 1
Q ss_pred hhhhhHHHHHhhh--cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 523 YQKEKDNVLEKTD--REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 523 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
. +..+. .+.- . .......+|+++++++|.|||++++++|++++...
T Consensus 340 ~-------~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 340 V-------FKGAKAYLNGN---S------ELFFQKGICLPSGTAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp G-------GTTCEEEECSH---H------HHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred h-------hhccCCCCChH---H------HHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 0 00000 0000 0 00001356666799999999999999999886553
No 114
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.71 E-value=1.7e-15 Score=161.65 Aligned_cols=144 Identities=9% Similarity=0.056 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchH-HHHHHHHHHcCCEEEEEeccCCcc
Q 007454 169 SGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAV-EAMIRTSEKRGARVMSAEFSWPRL 223 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV-~~~~~~a~~~Ga~V~~~~~~~~~g 223 (603)
....++.|++|++++|++ +.+++.. .+.++ ..+...++..|+++..++.
T Consensus 58 ~~~~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~----- 131 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA-GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT----- 131 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT-----
T ss_pred ChHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC-----
Confidence 456778999999999986 4444321 12222 2223335677888888875
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEE
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC 302 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~ 302 (603)
.+.++|++.|.. ++++|.+...+|.||.++|++.+ ++|+++|+++++|.++..+....+++ +++|+++.
T Consensus 132 -~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~~di~~~ 201 (389)
T 3acz_A 132 -SDVEKVKAAWKP------NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LGADIALH 201 (389)
T ss_dssp -TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TTCSEEEE
T ss_pred -CCHHHHHHhcCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cCCeEEEE
Confidence 267888888753 68999999999999999999966 58999999999999988765212454 57999999
Q ss_pred cccccCCCCCCc--eEEEEEeC-CCCcCcC
Q 007454 303 SFYQIFGENPSG--FGCLFVKK-STVPILV 329 (603)
Q Consensus 303 S~hK~fG~~P~G--~G~L~vkk-~~~~~L~ 329 (603)
|+||+||+ |.+ .|++++++ ++++.+.
T Consensus 202 S~sK~~~~-~~~~~~G~v~~~~~~~~~~l~ 230 (389)
T 3acz_A 202 SVSKYING-HGDVIGGVSSAKTAEDIATIK 230 (389)
T ss_dssp ETTTTTTC-SSCCCCEEEEESSHHHHHHHH
T ss_pred CChhhccC-CCCceeEEEEECcHHHHHHHH
Confidence 99999886 666 59999987 6654443
No 115
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.71 E-value=2e-16 Score=167.66 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHcCCC--C-CcEEEecc----------------------CchHHHHHHHHHHcCCEEEEEeccC---
Q 007454 169 SGLESAMKKRIMDFLNIS--E-NDYVYDYE----------------------SEAVEAMIRTSEKRGARVMSAEFSW--- 220 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~lna~--~-~e~vf~~e----------------------s~sV~~~~~~a~~~Ga~V~~~~~~~--- 220 (603)
.++.+++++.+++++|++ + ++++++.. ..+.......++..|+++..++.++
T Consensus 81 ~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 160 (407)
T 3nra_A 81 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSA 160 (407)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccc
Confidence 467778888899988984 3 67866421 1112223455677899999999832
Q ss_pred --CccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCC
Q 007454 221 --PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSF 290 (603)
Q Consensus 221 --~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~l 290 (603)
.++.++.++|++.|.. +++++++...+|.||.++| ++.+ ++|+++|+++++|.++.. ++. ..
T Consensus 161 ~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~--~~ 232 (407)
T 3nra_A 161 DETRAGLDLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGAS--YT 232 (407)
T ss_dssp CCSSCCBCHHHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCC--CC
T ss_pred cCcCCCcCHHHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CC
Confidence 3677899999999974 5788999999999999999 6544 478999999999999875 331 22
Q ss_pred CCC-----CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCc
Q 007454 291 GLS-----LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 363 (603)
Q Consensus 291 dls-----~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 363 (603)
.+. ..+.++++.|++|+|| +.| +|+++.++++++.+.... .
T Consensus 233 ~~~~~~~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~------------~------------------ 280 (407)
T 3nra_A 233 HLRAEAAVDAENVVTIMGPSKTES--LSGYRLGVAFGSRAIIARMEKLQ------------A------------------ 280 (407)
T ss_dssp CGGGCTTSCGGGEEEEECSSSTTC--CGGGCCEEEEECHHHHHHHHHHH------------H------------------
T ss_pred ChhhcCcccCCcEEEEeCcccccC--CCeeeEEEEEcCHHHHHHHHHHH------------h------------------
Confidence 222 2446799999999999 335 788887765543333100 0
Q ss_pred ccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHH
Q 007454 364 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC 443 (603)
Q Consensus 364 ~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~ 443 (603)
....+.+..+..++. .+++.. .-.++...++.+.
T Consensus 281 -----~~~~~~~~~~~~a~~----------------------------------------~~l~~~-~~~~~~~~~~~~~ 314 (407)
T 3nra_A 281 -----IVSLRAAGYSQAVLR----------------------------------------GWFDEA-PGWMEDRIARHQA 314 (407)
T ss_dssp -----HHTSSSCHHHHGGGG----------------------------------------GTTCCC-TTHHHHHHHHHHH
T ss_pred -----hhccCCChHHHHHHH----------------------------------------HHHhcc-chHHHHHHHHHHH
Confidence 001122222222221 111100 0014556677788
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCch
Q 007454 444 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDK 522 (603)
Q Consensus 444 L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~ 522 (603)
++++|.+.|.+++ | ++++.|. .+..+.+.+.+. .++. .++++|++++||.++.|..|.+.
T Consensus 315 ~~~~l~~~L~~~~-----~---~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~~~~~---- 375 (407)
T 3nra_A 315 IRDELLHVLRGCE-----G---VFARTPQ----AGSYLFPRLPKL---AVAPAEFVKILRLQAGVVVTPGTEFSPH---- 375 (407)
T ss_dssp HHHHHHHHHHTST-----T---CBCCCCS----BSSEECCBCCCB---SSCHHHHHHHHHHHHCEECEEGGGTCTT----
T ss_pred HHHHHHHHHhcCC-----C---ceeccCC----eeEEEEEeCCCC---CCCHHHHHHHHHHhCCEEEeCchhhCCC----
Confidence 8999999998763 1 4454442 234554444431 1233 34555667789999999777521
Q ss_pred hhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 523 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 523 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|++. |.+||+++++.|++++..
T Consensus 376 ------------------------------~~~~iRis~~~--~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 376 ------------------------------TADSVRLNFSQ--DHEAAVAAARRIVTLVER 404 (407)
T ss_dssp ------------------------------CTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 12589999994 999999999999998764
No 116
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.70 E-value=6e-16 Score=163.94 Aligned_cols=300 Identities=12% Similarity=0.078 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEecc-CchHH----------------------HHHHHHHHcCCEEEEEeccCCccccC
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYE-SEAVE----------------------AMIRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~----------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
....+.|++|++++|.+ +.+|... ++++. .....++..|+++..++++..++.++
T Consensus 56 ~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 133 (391)
T 3dr4_A 56 RFIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLD 133 (391)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred hHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcC
Confidence 34678999999999876 4444311 11111 12334456789999998875567889
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCC--CCCCCCcEEEEc
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFG--LSLVRPDFLICS 303 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ld--ls~~~~Dflv~S 303 (603)
.++|++.|.. ++++|+ .+|.||...|++.+ ++|+++|+++++|++|..|. ...+ +..+ .|++++|
T Consensus 134 ~~~l~~~~~~------~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~-~di~~~S 201 (391)
T 3dr4_A 134 AAKLEALITP------RTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGA--TYRGKKSGSL-GDCATFS 201 (391)
T ss_dssp GGGSGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC--EETTEETTSS-SSEEEEE
T ss_pred HHHHHHhcCC------CceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccc--eECCeeeccc-CCEEEEE
Confidence 9998887753 577777 36899999999966 58999999999999988765 2222 2222 3666666
Q ss_pred --ccccCCCCCCceEEEEEeCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454 304 --FYQIFGENPSGFGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM 380 (603)
Q Consensus 304 --~hK~fG~~P~G~G~L~vkk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~ 380 (603)
.||+++ +...|+++.++. +.+.+++...+|... . ..++. .+.|.. + .+.
T Consensus 202 ~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g~~~---~-~~~~~--------------------~~~g~~-~-~~~ 253 (391)
T 3dr4_A 202 FFGNAIIT--TGEGGMITTNDDDLAAKMRLLRGQGMDP---N-RRYWF--------------------PIVGFN-Y-RMT 253 (391)
T ss_dssp CBTTSSSC--CBSCEEEEESCHHHHHHHHHHHBTTCCT---T-STTCC--------------------SSCCCB-C-BCC
T ss_pred CCCCCcCC--cCCeEEEEECCHHHHHHHHHHHhcCCCC---C-Ccccc--------------------cccccc-c-CCC
Confidence 669998 422445555543 333333222223210 0 01110 011211 1 111
Q ss_pred hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454 381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT 460 (603)
Q Consensus 381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~ 460 (603)
.+. +++.+....+++.+.++.+.+.+++.+.|.++ .
T Consensus 254 ~l~----------------------------------------aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g--- 289 (391)
T 3dr4_A 254 NIQ----------------------------------------AAIGLAQLERVDEHLAARERVVGWYEQKLARL-G--- 289 (391)
T ss_dssp HHH----------------------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-T---
T ss_pred HHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C---
Confidence 221 34444444478889999999999999999886 1
Q ss_pred CCCceEEEeCC--CCC-CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc---ccCccCCchhhhhhHHHHHhh
Q 007454 461 EGNALVKIYGP--KIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS---LHHIWFSDKYQKEKDNVLEKT 534 (603)
Q Consensus 461 ~g~plv~Iygp--~~~-~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~---~C~~~~~~~~~~~~~~~l~~~ 534 (603)
++++++ ... .....++.+.+++..+ +....+.+.+.++||.++.|. +|.+.+...........
T Consensus 290 -----~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~---- 358 (391)
T 3dr4_A 290 -----NRVTKPHVALTGRHVFWMYTVRLGEGLS--TTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIA---- 358 (391)
T ss_dssp -----TSEECCCCCTTSCCCCSSEEEEECSSCS--SCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHH----
T ss_pred -----ccccCcCCCCCCcceeEEEEEEECCccc--hhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHH----
Confidence 345554 211 1223466777765322 344556666667899999986 66654322000000000
Q ss_pred hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
.......||++++.++|.|||+++++.|++++
T Consensus 359 ---------------~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 359 ---------------EACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp ---------------HHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred ---------------HHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 00112589999999999999999999998765
No 117
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.70 E-value=4.7e-16 Score=164.31 Aligned_cols=315 Identities=10% Similarity=-0.009 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEecc-----------------------CchHHHHHHHHHHcCCEEEEEeccCCccccC
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYE-----------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-----------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
....+.|++|++++|++ ++++... ..........++..|++++.+++++.++.++
T Consensus 39 ~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d 116 (393)
T 1mdo_A 39 PKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVT 116 (393)
T ss_dssp HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred hHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCC
Confidence 34568889999999874 4544311 1111223345567899999999875446799
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC-CcEEEEcc
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR-PDFLICSF 304 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~-~Dflv~S~ 304 (603)
.++|++.|.. ++++|.+. |.||...|++.+ ++|+++|+++++|+++..|. .. +...++ +|++++|+
T Consensus 117 ~~~l~~~l~~------~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~-~~~~~~~~d~~~~S~ 184 (393)
T 1mdo_A 117 PEHIEAAITP------QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGT--SY-KGRHIGARGTAIFSF 184 (393)
T ss_dssp HHHHHHHCCT------TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTC--EE-TTEETTSSSEEEEEC
T ss_pred HHHHHHhcCC------CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCC--eE-CCeecCCCCeEEEeC
Confidence 9999999863 57887764 589999999865 58999999999999998763 11 122234 89999999
Q ss_pred c--ccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC-CChhhhh
Q 007454 305 Y--QIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT-NTFSGPM 380 (603)
Q Consensus 305 h--K~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT-~n~~gi~ 380 (603)
| |+++ |...|+++.+ +++.+.+.+...+|... +...+++ ..+ +..+...+.|+ .++..+.
T Consensus 185 ~k~K~l~--~~~~g~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~--~~~----------~~~~~~~~~g~~~~~~~~~ 248 (393)
T 1mdo_A 185 HAIKNIT--CAEGGIVVTDNPQFADKLRSLKFHGLGV--DAWDRQS--GGR----------APQAEVLAPGYKYNLPDLN 248 (393)
T ss_dssp CTTSSSC--SSSCEEEEESCHHHHHHHHHHTBTTEEC--C-----------------------CCEESSCCCBCCCCHHH
T ss_pred CCCCccc--cccceEEEeCCHHHHHHHHHHHhcCCcc--cchhhhc--ccc----------cccccccccCccCCCCHHH
Confidence 9 9888 4345666665 45555454322222210 0001100 000 00000012343 1122111
Q ss_pred hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454 381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT 460 (603)
Q Consensus 381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~ 460 (603)
+ + .++..++ +++.+.++.+.+.++|.+.|.++
T Consensus 249 ~-a----------------------------------------~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~----- 280 (393)
T 1mdo_A 249 A-A----------------------------------------IALAQLQ--KLDALNARRAAIAAQYHQAMADL----- 280 (393)
T ss_dssp H-H----------------------------------------HHHHHHH--THHHHHHHHHHHHHHHHHHHHTS-----
T ss_pred H-H----------------------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 1 0 1222332 46778888889999999999875
Q ss_pred CCCceEEEeCCCC--CCCCCCEEEEEEccCC-CCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454 461 EGNALVKIYGPKI--RFDRGPALAFNVFDWK-REKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE 537 (603)
Q Consensus 461 ~g~plv~Iygp~~--~~~rg~ivsFnv~~~~-g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~ 537 (603)
+ ++++++.. ....+.++.|.+++.. + ++...+.+.+.++||.++.|..|.... ++ ...+.
T Consensus 281 ---~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~l~~~gi~v~~~~~~~~~~--~~-------~~~~~-- 343 (393)
T 1mdo_A 281 ---P-FQPLSLPSWEHIHAWHLFIIRVDEARCG--ITRDALMASLKTKGIGTGLHFRAAHTQ--KY-------YRERF-- 343 (393)
T ss_dssp ---S-CEECCCCSSCEECCCSCEEEECCHHHHS--SCHHHHHHHHHHTTBCCBCCCCCGGGS--HH-------HHHHS--
T ss_pred ---C-cccccCCCCCCCceeEEEEEEecccccc--cCHHHHHHHHHhCCCCcccccCccccC--hh-------hhccC--
Confidence 2 56665321 1123457888876200 1 234445555566899999998874321 11 00000
Q ss_pred cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.. ....+. .......||+|++.++|.+||+++++.|++++..
T Consensus 344 ~~-~~~~~~---~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 344 PT-LTLPDT---EWNSERICSLPLFPDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp TT-CCCHHH---HHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred Cc-cCChhH---HHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 00 000000 0011258999999999999999999999988754
No 118
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.70 E-value=1.3e-15 Score=161.19 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=177.5
Q ss_pred HHHHHHHHc----C--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCc--cc
Q 007454 175 MKKRIMDFL----N--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPR--LR 224 (603)
Q Consensus 175 aR~~Ia~~l----n--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~--g~ 224 (603)
.|++|++++ | +++++++++... .+.......++..|+++..+++++.+ ..
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 148 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWF 148 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccc
Confidence 677777765 6 677888775321 12222344556779999998886432 24
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCC
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSLVR 296 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~ 296 (603)
++.++|++.|.. .++++|.++..+|.||.++| ++.+ ++|+++|+++++|.++.. ++ ...++..+.
T Consensus 149 ~d~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~ 221 (390)
T 1d2f_A 149 CDMGKLEAVLAK-----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNVA 221 (390)
T ss_dssp CCHHHHHHHHTS-----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGTC
T ss_pred cCHHHHHHHhcc-----CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHcc
Confidence 899999999863 25889998999999999999 5533 578999999999999875 32 133444343
Q ss_pred C---cEEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454 297 P---DFLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 370 (603)
Q Consensus 297 ~---Dflv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e 370 (603)
+ |. +.|++|+|| +.| +|+++++ +++.+.+..... | . ..
T Consensus 222 ~~~~d~-~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~~-~------------------------------~--~~ 265 (390)
T 1d2f_A 222 RGDWAL-LTSGSKSFN--IPALTGAYGIIENSSSRDAYLSALK-G------------------------------R--DG 265 (390)
T ss_dssp CSSEEE-EECSHHHHT--CGGGCCEEEEECSHHHHHHHHHHHH-T------------------------------T--SC
T ss_pred hhhHhh-ccCccHhhc--ccChhheEEEECCHHHHHHHHHHHh-h------------------------------h--cc
Confidence 3 77 999999998 557 6999986 344332321100 0 0 01
Q ss_pred cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454 371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~ 450 (603)
.+++|..+.+++. ++++.... .++.+.++.+.+.++|.+
T Consensus 266 ~~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~l~~ 304 (390)
T 1d2f_A 266 LSSPSVLALTAHI----------------------------------------AAYQQGAP-WLDALRIYLKDNLTYIAD 304 (390)
T ss_dssp CCSCCHHHHHHHH----------------------------------------HHHHHCHH-HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH----------------------------------------HHHhcCHH-HHHHHHHHHHHHHHHHHH
Confidence 2345555543332 34443221 256777888889999999
Q ss_pred HHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhH
Q 007454 451 ALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKD 528 (603)
Q Consensus 451 ~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~ 528 (603)
.|.+ ++ | ++++.|. -+.++.+.+++. + ++.. +.++|++++||.++.|..|..
T Consensus 305 ~L~~~~~-----~---~~~~~~~----~~~~~~~~~~~~-~--~~~~~l~~~l~~~~gi~v~~g~~f~~----------- 358 (390)
T 1d2f_A 305 KMNAAFP-----E---LNWQIPQ----STYLAWLDLRPL-N--IDDNALQKALIEQEKVAIMPGYTYGE----------- 358 (390)
T ss_dssp HHHHHCS-----S---CCCCCCS----BCSEEEEECGGG-C--CCHHHHHHHHHHTTCEECEEGGGGCG-----------
T ss_pred HHHhhCC-----C---CEEecCC----ccEEEEEEcccc-C--CCHHHHHHHHHHHcCEEeeCccccCC-----------
Confidence 9987 43 1 4444432 233445677642 1 2233 445565578999999877632
Q ss_pred HHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 529 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+.+|+|++. +.++++++++.|++.+.+
T Consensus 359 -----------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 359 -----------------------EGRGFVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp -----------------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 012589999997 589999999999888753
No 119
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.69 E-value=6.1e-16 Score=162.28 Aligned_cols=267 Identities=10% Similarity=0.054 Sum_probs=172.1
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccC-chHHH-------------------HHHHHHHcCCEEEEEeccCCccccC-HHHHH
Q 007454 173 SAMKKRIMDFLNISENDYVYDYES-EAVEA-------------------MIRTSEKRGARVMSAEFSWPRLRIN-SEKLR 231 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es-~sV~~-------------------~~~~a~~~Ga~V~~~~~~~~~g~i~-~~~L~ 231 (603)
.+.|++|++++|+++++++|+... +++.. ....++..|+++..++.++.+ .++ .+++.
T Consensus 62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~l~~~~ 140 (364)
T 1lc5_A 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREAD-GWQLTDAIL 140 (364)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG-TTCCCTTHH
T ss_pred HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHcCCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCccc-ccchhHHHH
Confidence 579999999999988899876432 22222 223345567777777765311 122 23333
Q ss_pred HHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCC--CCCCCC-CCCCCcEEEEcc
Q 007454 232 KMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKD--MDSFGL-SLVRPDFLICSF 304 (603)
Q Consensus 232 ~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldl-s~~~~Dflv~S~ 304 (603)
+.+. +++++++++..+|.||.++| ++.+ ++|+++|+++++|.++..... ...+++ ...+.|+++.|+
T Consensus 141 ~~~~------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 214 (364)
T 1lc5_A 141 EALT------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSL 214 (364)
T ss_dssp HHCC------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEES
T ss_pred Hhcc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEEC
Confidence 3332 35788999999999999999 5544 578999999999998864320 012332 346789999999
Q ss_pred cccCCCCCCc--eEEEE-EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454 305 YQIFGENPSG--FGCLF-VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS 381 (603)
Q Consensus 305 hK~fG~~P~G--~G~L~-vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g 381 (603)
+|+|| +.| +|+++ .++++++.+.+.. ...+.|..+..+
T Consensus 215 sK~~~--~~G~r~G~~~~~~~~~~~~l~~~~-------------------------------------~~~~~~~~~~~~ 255 (364)
T 1lc5_A 215 TKFYA--IPGLRLGYLVNSDDAAMARMRRQQ-------------------------------------MPWSVNALAALA 255 (364)
T ss_dssp TTTTT--CTTTCCEEEECCCHHHHHHHHHHS-------------------------------------CTTCSCHHHHHH
T ss_pred chhhc--CCccceEEEEECCHHHHHHHHHhC-------------------------------------CCCCCCHHHHHH
Confidence 99998 446 69998 7766544333110 112233333332
Q ss_pred hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454 382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE 461 (603)
Q Consensus 382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~ 461 (603)
+. ++++.. -.++.+.++.+.++++|.+.|.+++
T Consensus 256 ~~----------------------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~----- 288 (364)
T 1lc5_A 256 GE----------------------------------------VALQDS--AWQQATWHWLREEGARFYQALCQLP----- 288 (364)
T ss_dssp HH----------------------------------------HGGGCH--HHHHHHHHHHHHHHHHHHHHHHTST-----
T ss_pred HH----------------------------------------HHHhCc--HHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 22 233221 1356777788888999999998752
Q ss_pred CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccc
Q 007454 462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK 541 (603)
Q Consensus 462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~ 541 (603)
.++++.+ .++.+.+.+++ +.. .++++|. ++||.++.|..|..
T Consensus 289 ---~~~~~~~-----~g~~~~~~~~~-~~~----~l~~~l~-~~gi~v~~g~~~~~------------------------ 330 (364)
T 1lc5_A 289 ---LLTVYPG-----RANYLLLRCER-EDI----DLQRRLL-TQRILIRSCANYPG------------------------ 330 (364)
T ss_dssp ---TEEECCC-----SSSEEEEEESC-TTC----CHHHHHH-TTTEECEECTTSTT------------------------
T ss_pred ---CCEECCC-----CCeEEEEECCC-cHH----HHHHHHH-HCCcEEeeCcccCC------------------------
Confidence 2676532 46788888864 221 2355555 56999998866531
Q ss_pred cccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 542 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 542 ~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+.+|+|++ +.+|+++|+++|++++..
T Consensus 331 ----------~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 331 ----------LDSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp ----------CCTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred ----------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 11258999965 799999999999988653
No 120
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.69 E-value=1.5e-16 Score=168.89 Aligned_cols=281 Identities=14% Similarity=0.120 Sum_probs=180.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHH
Q 007454 173 SAMKKRIMDFLNISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKL 230 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L 230 (603)
.+.|++|++++|+++++++++... .+.......++..|+++..++.++ ++ ++.++|
T Consensus 77 ~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~-~d~~~l 154 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-EG-PDLDAL 154 (397)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-TE-ECHHHH
T ss_pred HHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-CC-CCHHHH
Confidence 478999999999888888775321 112223344566788888888874 44 899999
Q ss_pred HHHHhhcCCCCCCeeEE-EEeCccccccccccHH---H-HHHHHhCCcEEEEeccccCCCC--CCCCCCCCCCCc-----
Q 007454 231 RKMVVSKGKKKKQRGLF-VFPLHSRMTGARYPYL---W-MRIAQENDWHILIDACALGPKD--MDSFGLSLVRPD----- 298 (603)
Q Consensus 231 ~~~l~~~~~~~~~t~Lv-~~~~~Sn~TG~~~pl~---~-i~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~D----- 298 (603)
++.|.. .++++| +++..+|.||.++|.+ . +++|+++|+++++|.++....- -...++..+++|
T Consensus 155 ~~~l~~-----~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (397)
T 2zyj_A 155 EEVLKR-----ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG 229 (397)
T ss_dssp HHHHHH-----CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred HHHHhh-----cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence 999974 146676 6899999999999986 2 3468999999999999876320 013444444333
Q ss_pred -EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 299 -FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 299 -flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
+++.|++|+|| +..++|++++++++++.+.... . . ...|+ |..
T Consensus 230 ~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~------------~--------------------~--~~~~~-~~~ 273 (397)
T 2zyj_A 230 VIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAK------------Q--------------------G--ADLHT-PML 273 (397)
T ss_dssp EEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHH------------H--------------------H--HHSSC-CHH
T ss_pred EEEEeccccccc-ccceeEEEecCHHHHHHHHHHH------------H--------------------h--hcCCC-CHH
Confidence 89999999999 3234799998866543332100 0 0 11233 322
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH 457 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h 457 (603)
+..++. ++++....-.++.+.++.+..+++|.+.|.+.-
T Consensus 274 ~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 312 (397)
T 2zyj_A 274 NQMLVH----------------------------------------ELLKEGFSERLERVRRVYREKAQAMLHALDREV- 312 (397)
T ss_dssp HHHHHH----------------------------------------HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHH----------------------------------------HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 222211 223211000245667777888888999887631
Q ss_pred CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454 458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE 537 (603)
Q Consensus 458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~ 537 (603)
+. .++++.|. .+..+.+.+++ + ++...+.+.+.++||.++.|..|...
T Consensus 313 ~~-----g~~~~~~~----~g~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~g~~f~~~------------------- 360 (397)
T 2zyj_A 313 PK-----EVRYTRPK----GGMFVWMELPK--G--LSAEGLFRRALEENVAFVPGGPFFAN------------------- 360 (397)
T ss_dssp CT-----TSEECCCS----BSSEEEEECST--T--CCHHHHHHHHHHTTEEEEESGGGCTT-------------------
T ss_pred CC-----CeEEccCC----ccEEEEEEcCC--C--CCHHHHHHHHHHCCCEEechHHhcCC-------------------
Confidence 10 14555542 46678888763 1 23333444444559999988765421
Q ss_pred cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
....+.+|+|++.. |.+||+++++.|++++++
T Consensus 361 -------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 361 -------------GGGENTLRLSYATL-DREGIAEGVRRLGRALKG 392 (397)
T ss_dssp -------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 01236899999996 999999999999998865
No 121
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.69 E-value=2.1e-16 Score=168.78 Aligned_cols=311 Identities=11% Similarity=0.069 Sum_probs=190.8
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN- 184 (603)
Q Consensus 107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln- 184 (603)
.+.++|+.+..+ +.++.+++++ +.+... + + .+..+ ....+.|++|+++++
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~--------~----~----~y~~~-----------~g~~~l~~~la~~~~~ 94 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKPE--------V----V----YYSHS-----------AGIWELREAFASYYKR 94 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCS--------S----C----CCCCT-----------TCCHHHHHHHHHHHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhcC--------C----C----CCCCC-----------CCcHHHHHHHHHHHHH
Confidence 346888887776 3567788887 654210 0 0 00100 012367777777764
Q ss_pred -----CCCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccC-CccccCHHHHHHHHhh
Q 007454 185 -----ISENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSW-PRLRINSEKLRKMVVS 236 (603)
Q Consensus 185 -----a~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~ 236 (603)
+++++++++... +++. .+...++..|+++..++.++ .+..+ .++|++.|.
T Consensus 95 ~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~- 172 (409)
T 2gb3_A 95 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN- 172 (409)
T ss_dssp TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC-
T ss_pred HhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC-
Confidence 556777664321 1111 12334455688888888763 12233 667777664
Q ss_pred cCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccCCCC---CCCCCCCC-CCCcEEEEcccccC
Q 007454 237 KGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALGPKD---MDSFGLSL-VRPDFLICSFYQIF 308 (603)
Q Consensus 237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~~~~---m~~ldls~-~~~Dflv~S~hK~f 308 (603)
+++++++++..+|.||.++|. +.+ ++|+++|+++++|.++....- +.++ +.. .+.|+++.|+||+|
T Consensus 173 -----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~ 246 (409)
T 2gb3_A 173 -----ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKF 246 (409)
T ss_dssp -----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTT
T ss_pred -----cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhcc
Confidence 268999999999999999874 433 478999999999999876430 1122 333 36799999999999
Q ss_pred CCCCCc--eEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC-CCChhhhhhhhh
Q 007454 309 GENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA-TNTFSGPMSIEM 384 (603)
Q Consensus 309 G~~P~G--~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G-T~n~~gi~gl~~ 384 (603)
| +.| +|++++++ ++++.+.+.. ..+ ++|.....++.
T Consensus 247 g--~~G~r~G~~~~~~~~l~~~l~~~~-------------------------------------~~~~~~~~~~~~a~~- 286 (409)
T 2gb3_A 247 S--ACGARVGCLITRNEELISHAMKLA-------------------------------------QGRLAPPLLEQIGSV- 286 (409)
T ss_dssp T--CGGGCCEEEECSCHHHHHHHHHHH-------------------------------------HHSCCCCHHHHHHHH-
T ss_pred C--CccceEEEEEECcHHHHHHHHHHH-------------------------------------hccCCCCHHHHHHHH-
Confidence 9 558 89999887 6543332100 011 33333332222
Q ss_pred hhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454 385 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA 464 (603)
Q Consensus 385 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p 464 (603)
++++.. .-+++.+.++.+.+.+++.+.|.++ |
T Consensus 287 ---------------------------------------~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~------g-- 318 (409)
T 2gb3_A 287 ---------------------------------------GLLNLD-DSFFDFVRETYRERVETVLKKLEEH------G-- 318 (409)
T ss_dssp ---------------------------------------HHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHT------T--
T ss_pred ---------------------------------------HHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHc------C--
Confidence 233221 1135677788888999999999875 2
Q ss_pred eEEE-eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhc-----CCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454 465 LVKI-YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADR-----ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA 538 (603)
Q Consensus 465 lv~I-ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~-----~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~ 538 (603)
+++ +.| ..+..+.+.+++.+ ..++.++|+++ +||.++.|..|...
T Consensus 319 -~~~~~~~----~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~-------------------- 369 (409)
T 2gb3_A 319 -LKRFTKP----SGAFYITAELPVED----AEEFARWMLTDFNMDGETTMVAPLRGFYLT-------------------- 369 (409)
T ss_dssp -CCCBCCC----SBSSEEEEECSSSC----HHHHHHHHHHSCCBTTEEEECEEGGGGCSS--------------------
T ss_pred -ceeeeCC----CeeEEEEEEeCCCC----HHHHHHHHHhccccccCcEEEeCchHhCCC--------------------
Confidence 233 333 22444444665322 12345556655 59999988665321
Q ss_pred ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.....+.+|+|++ ++.+||+++++.|++++..
T Consensus 370 -----------~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 370 -----------PGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp -----------TTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 0112368999999 8999999999999998865
No 122
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.69 E-value=7.4e-16 Score=163.31 Aligned_cols=275 Identities=11% Similarity=0.062 Sum_probs=178.6
Q ss_pred HHHHHHHHHHc----C--CCCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccCCcc-
Q 007454 173 SAMKKRIMDFL----N--ISENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSWPRL- 223 (603)
Q Consensus 173 ~~aR~~Ia~~l----n--a~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g- 223 (603)
.+.|++|++++ | +++++++++... +++. .....++..|+++..++.++.++
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~ 148 (399)
T 1c7n_A 69 EEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGY 148 (399)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTE
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCC
Confidence 46677777764 6 667788775431 1222 22334456688888877753333
Q ss_pred -ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCC
Q 007454 224 -RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSL 294 (603)
Q Consensus 224 -~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~ 294 (603)
.++.++|++.|.. .++++|+++..+|.||.++| ++.+ ++|+++|+++++|.++.. ++ ...++..
T Consensus 149 ~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~ 221 (399)
T 1c7n_A 149 YTIDFQKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQS 221 (399)
T ss_dssp EECCHHHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGG
T ss_pred EEEcHHHHHHHhcc-----CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHH
Confidence 4899999999963 26889999999999999999 6644 578999999999999875 32 1234433
Q ss_pred C-----CCcEEEEcccccCCCCCCc--eEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccc
Q 007454 295 V-----RPDFLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK 366 (603)
Q Consensus 295 ~-----~~Dflv~S~hK~fG~~P~G--~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 366 (603)
+ +.++++.|++|+|| +.| +|++++++ ++++.+.+.. . .
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~l~~~~------------~--------------------~ 267 (399)
T 1c7n_A 222 IDEQLADKTITFTAPSKTFN--IAGMGMSNIIIKNPDIRERFTKSR------------D--------------------A 267 (399)
T ss_dssp SCHHHHTTEEEEECSHHHHT--CGGGCCEEEECCCHHHHHHHHHHH------------H--------------------H
T ss_pred cCccccCcEEEEEeChhhcc--ccchheEEEEECCHHHHHHHHHHH------------h--------------------h
Confidence 2 45789999999999 457 69999864 3443332100 0 0
Q ss_pred cccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007454 367 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 446 (603)
Q Consensus 367 ~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~ 446 (603)
+..+++|..+.+++. ++++... -.++.+.++.+.+++
T Consensus 268 --~~~~~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~ 304 (399)
T 1c7n_A 268 --TSGMPFTTLGYKACE----------------------------------------ICYKECG-KWLDGCIKVIDKNQR 304 (399)
T ss_dssp --TTCCCCCHHHHHHHH----------------------------------------HHHHHCH-HHHHHHHHHHHHHHH
T ss_pred --cccCCCCHHHHHHHH----------------------------------------HHHhCCh-HHHHHHHHHHHHHHH
Confidence 112344554443332 3444211 136677788889999
Q ss_pred HHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCE-EEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchh
Q 007454 447 WLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPA-LAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKY 523 (603)
Q Consensus 447 ~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~i-vsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~ 523 (603)
+|.+.|.+ ++ | ++++.| .++. +.+.+++. + ++.. +.++|++++||.++.|..|...
T Consensus 305 ~l~~~L~~~~~-----~---~~~~~~-----~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~----- 363 (399)
T 1c7n_A 305 IVKDFFEVNHP-----E---IKAPLI-----EGTYLQWIDFRAL-K--MDHKAMEEFMIHKAQIFFDEGYIFGDG----- 363 (399)
T ss_dssp HHHHHHHHHCT-----T---SBCCCC-----SBSSEEEEECGGG-C--CCHHHHHHHHHHTTCCCCEEGGGGCGG-----
T ss_pred HHHHHHHhhCC-----C---CeEecC-----CceEEEEEEcccC-C--CCHHHHHHHHHHhCCEEEeCccccCCC-----
Confidence 99999987 53 2 344433 2344 44677642 1 2233 4555656889999988766320
Q ss_pred hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|++.. .++++++++.|++++++
T Consensus 364 -----------------------------~~~~iRis~~~~--~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 364 -----------------------------GIGFERINLAAP--SSVIQESLERLNKALKD 392 (399)
T ss_dssp -----------------------------GTTEEEEECCSC--HHHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCeEEEEeccC--HHHHHHHHHHHHHHHHH
Confidence 125899999975 79999999999988865
No 123
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.69 E-value=7.4e-16 Score=161.41 Aligned_cols=302 Identities=12% Similarity=0.065 Sum_probs=189.4
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (603)
Q Consensus 107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna 185 (603)
++.++|+.+... +.++.+++++.+.+... ... ....+... ..+.|++|++++|+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---------~~~------~~~y~~~~----------~~~lr~~la~~~g~ 80 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPD---------GAA------LRIYPSAS----------SQKLREVAGELYGF 80 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTT---------CGG------GGSCCCSS----------CHHHHHHHHHHHTC
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcc---------cch------hhcCCCCc----------hHHHHHHHHHHhCc
Confidence 456888877665 35678888877643210 000 00111111 24789999999999
Q ss_pred CCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454 186 SENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ 243 (603)
Q Consensus 186 ~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~ 243 (603)
++++++++... +++. .....++..|+++..++.+. ++.+ ++|.+. .+
T Consensus 81 ~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~--~~l~~~--------~~ 149 (360)
T 3hdo_A 81 DPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG-DFRI--AGFPER--------YE 149 (360)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT-TSSB--TTCCSS--------BC
T ss_pred CcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC-CCCH--HHHHhh--------cC
Confidence 99999876432 1222 22334455677777777752 3333 222111 13
Q ss_pred eeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC--CCCCCCCCC-CCCCCcEEEEcccccCCCCCCceEEEE
Q 007454 244 RGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG--PKDMDSFGL-SLVRPDFLICSFYQIFGENPSGFGCLF 319 (603)
Q Consensus 244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~--~~~m~~ldl-s~~~~Dflv~S~hK~fG~~P~G~G~L~ 319 (603)
+++++++..+|.||.++|++.+ ++|+++|+++++|.++.. ++ ..+.+ ...+.++++.|++|.||.+..++|+++
T Consensus 150 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 227 (360)
T 3hdo_A 150 GKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAES--NALELVRRHENVVVTRTLSKSYSLAGMRIGLAI 227 (360)
T ss_dssp SSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSC--CCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEE
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCc--chhHHhccCCCEEEEecchHhhcCCccceeeEe
Confidence 5699999999999999999966 589999999999998763 32 12222 234566889999999983222368887
Q ss_pred EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454 320 VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR 399 (603)
Q Consensus 320 vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~ 399 (603)
.++++.+.+... ....+.|..+..++.
T Consensus 228 ~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~---------------- 254 (360)
T 3hdo_A 228 ARPEVIAALDKI-------------------------------------RDHYNLDRLAQAACV---------------- 254 (360)
T ss_dssp CCHHHHHHHHHH-------------------------------------SCSCCSCHHHHHHHH----------------
T ss_pred eCHHHHHHHHHh-------------------------------------CCCCCCCHHHHHHHH----------------
Confidence 755443322210 011233444433322
Q ss_pred hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454 400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP 479 (603)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ 479 (603)
++++..+ .++.+.++.+.++++|.+.|.++ | +.++.+ .+.
T Consensus 255 ------------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------~---~~~~~~-----~~~ 294 (360)
T 3hdo_A 255 ------------------------AALRDQA--YLSECCRRIRETREWFTTELRSI------G---YDVIPS-----QGN 294 (360)
T ss_dssp ------------------------HHHHCHH--HHHHHHHHHHHHHHHHHHHHHHT------T---CEECCC-----SSS
T ss_pred ------------------------HHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC------C---CEEcCC-----Ccc
Confidence 3444311 36777888899999999999875 2 445432 467
Q ss_pred EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454 480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA 559 (603)
Q Consensus 480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~ 559 (603)
.+.+.+++. +...+.+.+.++||.++.|.. . ...+.||+
T Consensus 295 ~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~--~----------------------------------~~~~~iRi 333 (360)
T 3hdo_A 295 YLFATPPDR-----DGKRVYDGLYARKVLVRHFSD--P----------------------------------LLAHGMRI 333 (360)
T ss_dssp EEEEECTTC-----CHHHHHHHHHHTTEECBCCCS--T----------------------------------TTTTSEEE
T ss_pred EEEEECCCC-----CHHHHHHHHHHCCEEEEECCC--C----------------------------------CCCCEEEE
Confidence 788877653 344555566678999986532 0 01258999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 560 SLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 560 Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
|++ |.+|+++|+++|+++-+.
T Consensus 334 s~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 334 SIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp ECC---CHHHHHHHHHHHHHHHC-
T ss_pred EcC---CHHHHHHHHHHHHHHhcc
Confidence 987 999999999999987543
No 124
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.69 E-value=5.8e-16 Score=163.84 Aligned_cols=275 Identities=13% Similarity=0.089 Sum_probs=174.8
Q ss_pred HHHHHHHHHHcC------CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCc-c
Q 007454 173 SAMKKRIMDFLN------ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPR-L 223 (603)
Q Consensus 173 ~~aR~~Ia~~ln------a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~-g 223 (603)
.+.|++|+++++ +++++++++... .+.......++..|+++..+++++.+ .
T Consensus 71 ~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~ 150 (391)
T 3h14_A 71 PALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRL 150 (391)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCC
Confidence 467888888875 678888775321 12223345566789999999886321 2
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccCCCC-CCCCCCCC-CCC
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALGPKD-MDSFGLSL-VRP 297 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~~~~-m~~ldls~-~~~ 297 (603)
.++.++|++. ++++|+++..+|.||.++|. +.+ ++|+++|+++++|.++..... -.+..+.. .+.
T Consensus 151 ~~d~~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 221 (391)
T 3h14_A 151 QPVPADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE 221 (391)
T ss_dssp SCCHHHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSS
T ss_pred CCCHHHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCC
Confidence 5688877654 47899999999999999994 433 468999999999998764210 00222222 345
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
++++.|++|+||.+..++|++++++++.+.+... .. ...+++|..
T Consensus 222 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~---------------------------------~~--~~~~~~~~~ 266 (391)
T 3h14_A 222 CYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERI---------------------------------AQ--NMFICAPHA 266 (391)
T ss_dssp SEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHH---------------------------------HH--HTTCCCCHH
T ss_pred EEEEEechhccCCccceeEEEEeCHHHHHHHHHH---------------------------------Hh--hhccCCCHH
Confidence 6888899999983223378888766554332210 00 113344444
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH 457 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h 457 (603)
+..++. ++++ ..-.++.+.++.+.++++|.+.|.++.
T Consensus 267 ~~~a~~----------------------------------------~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~- 303 (391)
T 3h14_A 267 SQVAAL----------------------------------------AALD--CDAELQANLDVYKANRKLMLERLPKAG- 303 (391)
T ss_dssp HHHHHH----------------------------------------HHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHH----------------------------------------HHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 433322 2333 111356777888889999999998752
Q ss_pred CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454 458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR 536 (603)
Q Consensus 458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~ 536 (603)
. +.++.| .-+..+.+.++... ++. +++++|++++||.++.|..|...
T Consensus 304 -----~--~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~------------------ 351 (391)
T 3h14_A 304 -----F--TRIAPP----DGAFYVYADVSDLT---DDSRAFAAEILEKAGVAVTPGLDFDPE------------------ 351 (391)
T ss_dssp -----C--CCBCCC----CBTTEEEEECTTTC---SCHHHHHHHHHHHHCEECEEGGGTCTT------------------
T ss_pred -----C--CcccCC----CeeEEEEEecCccC---CCHHHHHHHHHHHCCEEEcCchhhCCC------------------
Confidence 1 222222 12345555665321 122 34566777779999999887531
Q ss_pred ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+.||+|++. +.+||+++++.|++++.+
T Consensus 352 ---------------~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 352 ---------------RGAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp ---------------TGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 112689999998 789999999999988764
No 125
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.69 E-value=8.2e-16 Score=163.69 Aligned_cols=325 Identities=10% Similarity=0.080 Sum_probs=191.1
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchH-HHHHHHHHHHHHHHcCCCCCcEEE
Q 007454 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESAMKKRIMDFLNISENDYVY 192 (603)
Q Consensus 114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~-~~~~~~aR~~Ia~~lna~~~e~vf 192 (603)
.++..++++.+++++.+.+... |..+++.+.+..+... ....+.+|+.+++++|+++..+++
T Consensus 38 ~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~ 100 (425)
T 3ecd_A 38 IASENIVSRAVLDAQGSVLTNK-----------------YAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQP 100 (425)
T ss_dssp CTTCCCCCHHHHHHHTSGGGSS-----------------CTTC------------CCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred ecccCCCCHHHHHHHhhhhhcc-----------------cccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeec
Confidence 4556677999999987654211 1123443333222221 245566788999999987644422
Q ss_pred eccCchHHHHHHHHHHc------------------------CC--EEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeE
Q 007454 193 DYESEAVEAMIRTSEKR------------------------GA--RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGL 246 (603)
Q Consensus 193 ~~es~sV~~~~~~a~~~------------------------Ga--~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~L 246 (603)
...++++..++..+.+. |. ++..++++..++.++.++|++.|... ++++
T Consensus 101 ~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~ 175 (425)
T 3ecd_A 101 HSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH-----KPSL 175 (425)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHH-----CCSE
T ss_pred CchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhc-----CCcE
Confidence 22222222222222112 22 33334443224678999999999732 4778
Q ss_pred EEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCC--CCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454 247 FVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDM--DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 323 (603)
Q Consensus 247 v~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m--~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~ 323 (603)
|.+...+| |...+++.+ ++|+++|+++++|.+|..+.-. ..... .-.+|++++|+||+|++ |. .|+++.++.
T Consensus 176 v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~-~~~~di~~~s~sK~l~g-~~-~g~~~~~~~ 250 (425)
T 3ecd_A 176 IIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP-VEHAHVVTSTTHKTLRG-PR-GGFVLTNDE 250 (425)
T ss_dssp EEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG-GGTCSEEEEESSGGGCC-CS-CEEEEESCH
T ss_pred EEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCc-hhcCcEEEecCCcccCC-CC-cEEEEeCCH
Confidence 88775444 889999865 5899999999999997543200 01111 11389999999999875 65 488887753
Q ss_pred -CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454 324 -TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE 402 (603)
Q Consensus 324 -~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~ 402 (603)
+...+.+..+.| ..|+++...++++.
T Consensus 251 ~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~------------------- 277 (425)
T 3ecd_A 251 EIAKKINSAVFPG----------------------------------LQGGPLMHVIAGKA------------------- 277 (425)
T ss_dssp HHHHHHHHHHC---------------------------------------CCCHHHHHHHH-------------------
T ss_pred HHHHHHHhhhCcc----------------------------------ccCCccHHHHHHHH-------------------
Confidence 222222110000 12344555544433
Q ss_pred hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454 403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA 482 (603)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs 482 (603)
.++.....-+++.+.++.+.+.++|.+.|.++ | ++++.|. ..+.++.
T Consensus 278 ---------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~~~~~~ 324 (425)
T 3ecd_A 278 ---------------------VAFGEALTDDFKTYIDRVLANAQALGDVLKAG------G---VDLVTGG---TDNHLLL 324 (425)
T ss_dssp ---------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---CSSSEEE
T ss_pred ---------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC------C---CeeccCC---CCceEEE
Confidence 34433222256788888999999999999874 2 4555432 3467888
Q ss_pred EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454 483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG 562 (603)
Q Consensus 483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg 562 (603)
+.+.+.. ++...+.+++.++||.++.+.. ++... .....+.+|++++
T Consensus 325 ~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~--p~~~~----------------------------~~~~~~~iRi~~~ 371 (425)
T 3ecd_A 325 VDLRPKG---LKGAQVEQALERAGITCNKNGI--PFDPE----------------------------KPTITSGIRLGTP 371 (425)
T ss_dssp EECGGGT---CCHHHHHHHHHHTTEECEECCC--TTCSS----------------------------CTTTCSEEEEESH
T ss_pred EEeCCCC---CCHHHHHHHHHHcCCEeccccc--CCCCC----------------------------CCCCccceeccch
Confidence 8876421 3456677777889999997642 11110 0112258999988
Q ss_pred CCCC----HHHHHHHHHHHHHHHhhh
Q 007454 563 YLAN----FEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 563 ~~tt----~eDVd~l~~~l~~~l~~~ 584 (603)
.+++ .+||+++++.|++.++..
T Consensus 372 ~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 372 AGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hheeccCCHHHHHHHHHHHHHHHhcc
Confidence 7776 999999999999998764
No 126
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.68 E-value=6e-16 Score=163.38 Aligned_cols=243 Identities=12% Similarity=0.130 Sum_probs=155.6
Q ss_pred HHHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEe
Q 007454 204 RTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILID 278 (603)
Q Consensus 204 ~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvD 278 (603)
..++..|+++..++.+.. +..++.++|++.|.. ++++|+++..+|.||.++| ++.+ ++|+++|+++++|
T Consensus 129 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 202 (388)
T 1j32_A 129 EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD 202 (388)
T ss_dssp HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 445667889988887632 356899999998863 5899999999999999988 5534 4789999999999
Q ss_pred ccccCCCC--CCCCCCCC-----CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccc
Q 007454 279 ACALGPKD--MDSFGLSL-----VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLT 349 (603)
Q Consensus 279 Aaq~~~~~--m~~ldls~-----~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~ 349 (603)
.++....- -....+.. .+.|+++.|+||+|| +.| +|++++++++++.+.+..
T Consensus 203 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~----------------- 263 (388)
T 1j32_A 203 EIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA--MTGWRVGFLAGPVPLVKAATKIQ----------------- 263 (388)
T ss_dssp CTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT--CTTTCCEEEECCHHHHHHHHHHH-----------------
T ss_pred ccchhcccCCCCCCCHHHccccccCCEEEEeechhccC--CcccceEEEEeCHHHHHHHHHHH-----------------
Confidence 98764210 00111221 457999999999998 668 999998876544333110
Q ss_pred cccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH
Q 007454 350 DEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV 429 (603)
Q Consensus 350 ~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~ 429 (603)
..+|.+.+.+...+ +. ++++..
T Consensus 264 --------------------~~~~~~~~~~~~~a-------------~~-------------------------~~l~~~ 285 (388)
T 1j32_A 264 --------------------GHSTSNVCTFAQYG-------------AI-------------------------AAYENS 285 (388)
T ss_dssp --------------------HTTTCSCCHHHHHH-------------HH-------------------------HHHHSC
T ss_pred --------------------hhcccCCCHHHHHH-------------HH-------------------------HHHhCC
Confidence 01111111111110 00 233211
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcE
Q 007454 430 DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENIS 508 (603)
Q Consensus 430 ~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~ 508 (603)
.-.++.+.++.+.+.++|.+.|.+++ | +++++|. .+..+.+.+... + ++. ++.++|++++||.
T Consensus 286 -~~~~~~~~~~~~~~~~~l~~~L~~~~-----g---~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~ 349 (388)
T 1j32_A 286 -QDCVQEMLAAFAERRRYMLDALNAMP-----G---LECPKPD----GAFYMFPSIAKT-G--RSSLDFCSELLDQHQVA 349 (388)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHTCT-----T---CBCCCCC----BTTEECCBCGGG-T--CCHHHHHHHHHHHHCEE
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhhCC-----C---CcccCCC----eeEEEEEecCCC-C--CCHHHHHHHHHHhCCEE
Confidence 01256677788889999999998763 2 4455442 122333344321 1 223 3455566668999
Q ss_pred EeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 509 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 509 lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
++.|..|.. .+.||+|++ ++.|||+++++.|+++++.
T Consensus 350 v~~g~~~~~------------------------------------~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 350 TVPGAAFGA------------------------------------DDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CEEGGGGTC------------------------------------TTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred EeChhhhCC------------------------------------CCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 988754421 157999998 7999999999999988764
No 127
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.68 E-value=7.2e-16 Score=167.18 Aligned_cols=330 Identities=12% Similarity=0.055 Sum_probs=191.7
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
.+..|||+++..+. +.+++++.+.+... . ..+++. ....+.|++|++++|.
T Consensus 39 ~~~~ylD~~~~~~~-~~v~~a~~~~l~~~---------~-------~~y~~~-----------~~~~~l~~~la~~~~~- 89 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-GAVTQSMQAAMMRG---------D-------EAYSGS-----------RSYYALAESVKNIFGY- 89 (467)
T ss_dssp GGGCSEECSCCSSC-SCCCHHHHHHTTSC---------C-------CCSSSC-----------HHHHHHHHHHHHHHCC-
T ss_pred CCCeeEecccCCCc-HHHHHHHHHHhccC---------c-------ceeccC-----------chhHHHHHHHHHHhCc-
Confidence 45789999888776 66666665543210 0 001111 2245789999999986
Q ss_pred CCcEEEecc-CchHHHHHHHHHHc-----C----CEEEEEecc-------------------------C-----CccccC
Q 007454 187 ENDYVYDYE-SEAVEAMIRTSEKR-----G----ARVMSAEFS-------------------------W-----PRLRIN 226 (603)
Q Consensus 187 ~~e~vf~~e-s~sV~~~~~~a~~~-----G----a~V~~~~~~-------------------------~-----~~g~i~ 226 (603)
++++|+.. ++++...+..+.+. | .+|.....- - .++.++
T Consensus 90 -~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 168 (467)
T 2oqx_A 90 -QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFD 168 (467)
T ss_dssp -SEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBC
T ss_pred -CcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcC
Confidence 56777653 34555555554444 6 554432100 0 134578
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccHH---HH-HHHHhCCcEEEEeccccC-----------CCCCCCC
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL---WM-RIAQENDWHILIDACALG-----------PKDMDSF 290 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl~---~i-~~a~e~g~~vlvDAaq~~-----------~~~m~~l 290 (603)
.++|+++|.... .+++++|++...+|.+ |.++|.+ .+ ++|+++|+++++|++|.. +. ..+
T Consensus 169 ~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~--~g~ 244 (467)
T 2oqx_A 169 LEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY--KDW 244 (467)
T ss_dssp HHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGG--TTS
T ss_pred HHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccc--cCc
Confidence 999999997421 1258999999999998 8887754 33 478999999999998766 33 223
Q ss_pred CCCC------CCCcEEEEcccccCCCCCCceEEEEEeCC-CCcC---cCCCC-CCCceeccccccccccccccCCCCCCc
Q 007454 291 GLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPI---LVDNT-SSGMVSLLPAKKQLWLTDEFSSCETEP 359 (603)
Q Consensus 291 dls~------~~~Dflv~S~hK~fG~~P~G~G~L~vkk~-~~~~---L~p~~-~gG~v~~~~~~~~~~~~~~~~~~~~e~ 359 (603)
++.. ..+|++++|+||+||. |.| |+++.++. +++. +++.. ++|..
T Consensus 245 ~~~~~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 300 (467)
T 2oqx_A 245 TIEQITRETYKYADMLAMSAKKDAMV-PMG-GLLCMKDDSFFDVYTECRTLCVVQEGF---------------------- 300 (467)
T ss_dssp CHHHHHHHHGGGCSEEEEESSSTTCC-SSC-EEEEECSGGGHHHHHHHHHHHHHTTSS----------------------
T ss_pred cHHHHhhhhhccCCeEEEecccccCC-CCc-eEEEecChhHHHHHHHHHHhhhccCCc----------------------
Confidence 3322 2489999999999995 655 66666666 3322 22110 11100
Q ss_pred ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454 360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 439 (603)
Q Consensus 360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~ 439 (603)
...|+.+..++.++. .+++. .+.-+.+ +
T Consensus 301 ---------~~~~~~~~~~~~al~----------------------------------------~~l~~--~~~~~~~-~ 328 (467)
T 2oqx_A 301 ---------PTYGGLEGGAMERLA----------------------------------------VGLYD--GMNLDWL-A 328 (467)
T ss_dssp ---------CCCCCCCHHHHHHHH----------------------------------------HHHHH--TTCHHHH-H
T ss_pred ---------ccccchhhhHHHHHH----------------------------------------HhhHh--hhhHHHH-H
Confidence 012333333332222 22221 1111122 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEcc----CCCCcc-CHHHHHHHHhcCCcEEeeCcc
Q 007454 440 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFD----WKREKI-EPVLVQKLADRENISLSYGSL 514 (603)
Q Consensus 440 r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~----~~g~~v-~~~~V~~Lad~~gI~lr~G~~ 514 (603)
+.+.+.++|.+.|.++ |. .+. | .++.++.|.+.+ .+...+ ...+..+|+.++||.++.|..
T Consensus 329 ~~~~~~~~l~~~L~~~------~~---~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~ 394 (467)
T 2oqx_A 329 YRIAQVQYLVDGLEEI------GV---VCQ-Q----AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGS 394 (467)
T ss_dssp HHHHHHHHHHHHHHHT------TC---CEE-E----ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESH
T ss_pred HHHHHHHHHHHHHHHC------CC---eee-c----CCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccccc
Confidence 3456778888888775 22 233 4 246678888742 333222 222345554788999987544
Q ss_pred cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCC-CCHHHHHHHHHHHHHHHhh
Q 007454 515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~-tt~eDVd~l~~~l~~~l~~ 583 (603)
|..+..... + .. .....+.||+|++.. +|.+||+++++.|+++++.
T Consensus 395 ~~~~~~~~~----------g--------~~-----~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 395 FLLGRDPKT----------G--------KQ-----LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp HHHCBCTTT----------C--------SB-----CCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccccccccc----------c--------cc-----ccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 432210000 0 00 112236999999999 9999999999999999865
No 128
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.68 E-value=9.4e-16 Score=163.41 Aligned_cols=299 Identities=13% Similarity=0.069 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEec-cCchH----------------------HHHHHHHHHcCCEEEEEeccCCccccC
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDY-ESEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~-es~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
....+.|++|++++|++ +.++.. .++++ ......++..|+++..+++++.++.++
T Consensus 63 ~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 140 (399)
T 2oga_A 63 PELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLD 140 (399)
T ss_dssp HHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBC
T ss_pred hhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcC
Confidence 34568889999999875 343321 11111 112344566799999998874457899
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC--CcEEEEc
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR--PDFLICS 303 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~--~Dflv~S 303 (603)
.++|++.|.. ++++|.+ +|.||.+.|++.+ ++|+++|+++++|+++..+. . .+...++ +|++++|
T Consensus 141 ~~~l~~~i~~------~~~~v~~---~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~-~~~~~~~~~~di~~~S 208 (399)
T 2oga_A 141 PLLVEKAITP------RTRALLP---VHLYGHPADMDALRELADRHGLHIVEDAAQAHGA--R-YRGRRIGAGSSVAAFS 208 (399)
T ss_dssp HHHHHHHCCT------TEEEECC---BCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTC--E-ETTEETTCTTCEEEEE
T ss_pred HHHHHHhcCC------CCeEEEE---eCCcCCccCHHHHHHHHHHcCCEEEEECcccccC--c-cCCeecccccCEEEEe
Confidence 9999998863 5777763 6899999999865 58999999999999998774 1 2333333 7999999
Q ss_pred cc--ccCCCCCCc-eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC---CCCh
Q 007454 304 FY--QIFGENPSG-FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA---TNTF 376 (603)
Q Consensus 304 ~h--K~fG~~P~G-~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G---T~n~ 376 (603)
+| |+|| |.| .|+++.+ +++.+.+++...+|... . + . .. ..| +.+.
T Consensus 209 ~~~sK~~~--~~G~~g~~~~~~~~~~~~l~~~~~~g~~~------~-~----------~-----~~----~~g~~~~~~~ 260 (399)
T 2oga_A 209 FYPGKNLG--CFGDGGAVVTGDPELAERLRMLRNYGSRQ------K-Y----------S-----HE----TKGTNSRLDE 260 (399)
T ss_dssp CCTTSSSC--CSSCCEEEEESCHHHHHHHHHHHBTTCSS------T-T----------C-----CC----SCCCBCCCCH
T ss_pred CCCCccCC--cCCceEEEEeCCHHHHHHHHHHHhcCccc------c-c----------c-----cc----ccccCCCcCH
Confidence 96 9999 545 4555554 45544444322112100 0 0 0 00 011 1222
Q ss_pred hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454 377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ 456 (603)
Q Consensus 377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~ 456 (603)
...+++. ++++. ++.+.++.+.+.+++.+.|.+++
T Consensus 261 ~~~a~~~----------------------------------------~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~ 295 (399)
T 2oga_A 261 MQAAVLR----------------------------------------IRLAH-----LDSWNGRRSALAAEYLSGLAGLP 295 (399)
T ss_dssp HHHHHHH----------------------------------------HHHHT-----HHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHH----------------------------------------HHHHH-----HHHHHHHHHHHHHHHHHHhccCC
Confidence 2211111 34443 44567788889999999998753
Q ss_pred CCCCCCCceEEEeCCCCCCCCCCE-EEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454 457 HPNTEGNALVKIYGPKIRFDRGPA-LAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 535 (603)
Q Consensus 457 h~~~~g~plv~Iygp~~~~~rg~i-vsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~ 535 (603)
| ++++++. ....++ +.|.+... +...+.+.+.++||.++.++.. .... ...+..++
T Consensus 296 -----g---~~~~~~~--~~~~~~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~~--~~~~------~~~~~~~~ 352 (399)
T 2oga_A 296 -----G---IGLPVTA--PDTDPVWHLFTVRTE-----RRDELRSHLDARGIDTLTHYPV--PVHL------SPAYAGEA 352 (399)
T ss_dssp -----T---CBCCCCC--TTEECCCSSEEEECS-----SHHHHHHHHHHTTBCCBCSCSS--CGGG------SHHHHTTS
T ss_pred -----C---ccccCCC--CCCcceeEEEEEECC-----CHHHHHHHHHHCCCceecCCCC--cccc------chhhcccC
Confidence 1 3443322 122233 34665542 2344555556689999876421 1000 01111110
Q ss_pred cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
. .. ..... ......++||+|++.++|.|||+++++.|+++++.
T Consensus 353 ~-~~-~~~p~---~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 353 P-PE-GSLPR---AESFARQVLSLPIGPHLERPQALRVIDAVREWAER 395 (399)
T ss_dssp C-CT-TSCHH---HHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred C-CC-CCChh---HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 00 00000 00001258999999999999999999999998753
No 129
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.68 E-value=3.1e-16 Score=168.93 Aligned_cols=291 Identities=13% Similarity=0.074 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHc------CCCCCcEEEeccC-chHHHHHHHHHHcCC--------------EEE----------------
Q 007454 172 ESAMKKRIMDFL------NISENDYVYDYES-EAVEAMIRTSEKRGA--------------RVM---------------- 214 (603)
Q Consensus 172 ~~~aR~~Ia~~l------na~~~e~vf~~es-~sV~~~~~~a~~~Ga--------------~V~---------------- 214 (603)
+.+.|++|++++ ++++++++|+... +++..++..+.+.|. +|.
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~ 164 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVE 164 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSS
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccc
Confidence 457899999998 6788999887653 244444443333333 333
Q ss_pred ------------EEeccCCcc----ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcE
Q 007454 215 ------------SAEFSWPRL----RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWH 274 (603)
Q Consensus 215 ------------~~~~~~~~g----~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~ 274 (603)
.++++..++ .++.++|++.|... +++++++.++..+|.||.++| ++.+ ++|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~ 241 (444)
T 3if2_A 165 GQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIP 241 (444)
T ss_dssp SCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred cchhhccCceEEecccccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCE
Confidence 223221022 57899998874310 136899999999999999999 5433 468999999
Q ss_pred EEEeccccCCCC---CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccc
Q 007454 275 ILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDE 351 (603)
Q Consensus 275 vlvDAaq~~~~~---m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~ 351 (603)
+++|.++..+.. ...+.....+.++++.|++|+ +.+..++|+++.++++.+.+.... .
T Consensus 242 li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~------------~------ 302 (444)
T 3if2_A 242 LIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMN------------A------ 302 (444)
T ss_dssp EEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHH------------H------
T ss_pred EEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHH------------H------
Confidence 999999864320 012222234678999999997 532234676666554433222100 0
Q ss_pred cCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHh
Q 007454 352 FSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS 431 (603)
Q Consensus 352 ~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~ 431 (603)
....+.+..+..++ ...+..
T Consensus 303 -----------------~~~~~~~~~~~~a~-------------------------------------------~~~l~~ 322 (444)
T 3if2_A 303 -----------------VVNLAPTRFGAAIA-------------------------------------------TPLVAN 322 (444)
T ss_dssp -----------------HHHSSCCCHHHHHH-------------------------------------------HHHHHT
T ss_pred -----------------hccCCCChHHHHHH-------------------------------------------HHHHHc
Confidence 00011122221111 111111
Q ss_pred cCH----H-HHHHHHHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcC
Q 007454 432 LGL----T-MISRRGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRE 505 (603)
Q Consensus 432 iGl----~-~i~~r~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~ 505 (603)
..+ . .+.++.+...+.+.+.|.+ ++. . .+.++.|. .+..+.+.++... ++...+.+.+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~-~~~~~~~~----~g~~~~~~~~~~~---~~~~~l~~~l~~~ 389 (444)
T 3if2_A 323 DRIKQLSDNEIKPFYQKQATLAVKLLKQALGD-----Y-PLMIHKPE----GAIFLWLWFKDLP---ISTLDLYERLKAK 389 (444)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS-----S-SEEEECCC----BSSEEEEEETTCS---SCHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-----C-CceEecCC----ccEEEEEEcCCCC---CCHHHHHHHHHHC
Confidence 111 1 1333444555555555544 321 1 16677653 4667777776421 3344555556788
Q ss_pred CcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Q 007454 506 NISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADF 585 (603)
Q Consensus 506 gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f 585 (603)
||.++.|..|..+....+ .....+.||+|++. +.+||+++++.|++++.+-+
T Consensus 390 gi~v~~g~~~~~~~~~~~--------------------------~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 390 GTLIVPSEYFFPGVDVSD--------------------------YQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp TEECEEGGGSCTTCCCTT--------------------------CSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecchhhcCCCCCcc--------------------------cccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHH
Confidence 999999999976532210 01123699999998 99999999999999886543
No 130
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.68 E-value=1.4e-15 Score=161.56 Aligned_cols=286 Identities=13% Similarity=0.101 Sum_probs=180.7
Q ss_pred HHHHHHHHHHc----C--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCccc
Q 007454 173 SAMKKRIMDFL----N--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLR 224 (603)
Q Consensus 173 ~~aR~~Ia~~l----n--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~ 224 (603)
.+.|++|++++ | +++++++++... .+.......++..|+++..++.++ ++
T Consensus 78 ~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~- 155 (407)
T 2zc0_A 78 PELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-DG- 155 (407)
T ss_dssp HHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-TE-
T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-CC-
Confidence 47888888888 8 567788775321 122223444566788888888874 44
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEE-EEeCccccccccccHH---HH-HHHHhCCcEEEEeccccCCCC--CCCCCCCCC--
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLF-VFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALGPKD--MDSFGLSLV-- 295 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv-~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~-- 295 (603)
++.++|++.|...+...+++++| +++..+|.||.++|++ .+ ++|+++|+++++|.++....- -...++..+
T Consensus 156 ~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 235 (407)
T 2zc0_A 156 MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDN 235 (407)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCS
T ss_pred CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCC
Confidence 89999999987100001257776 6889999999999996 33 478999999999999765320 011223222
Q ss_pred -CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC
Q 007454 296 -RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 374 (603)
Q Consensus 296 -~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~ 374 (603)
+.++++.|++|+|| +...+|++++++++++.+.+.... ...++
T Consensus 236 ~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~----------------------------------~~~~~- 279 (407)
T 2zc0_A 236 EGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQP----------------------------------IDFCA- 279 (407)
T ss_dssp SCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTT----------------------------------TTSSS-
T ss_pred CCCEEEEcccccccC-CCcceEEEecCHHHHHHHHHHHHh----------------------------------hcCCC-
Confidence 45688999999999 311389999876654433311000 00111
Q ss_pred ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHH
Q 007454 375 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV--DSLGLTMISRRGRCLINWLVNAL 452 (603)
Q Consensus 375 n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~--~~iGl~~i~~r~~~L~~~L~~~L 452 (603)
+.....++. .+++.. +.-.++.+.++.+.++++|.+.|
T Consensus 280 ~~~~~~~~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 319 (407)
T 2zc0_A 280 PAISQYIAL----------------------------------------EYLKRGYFEKYHLEGALLGYKEKRDIMLKAL 319 (407)
T ss_dssp CHHHHHHHH----------------------------------------HHHHTTHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH----------------------------------------HHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111 233321 10246677788888999999999
Q ss_pred hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454 453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 531 (603)
Q Consensus 453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l 531 (603)
.++. + | +++++| ..+..+.|.+++ + ++. ++.++|.+++||.++.|..|....
T Consensus 320 ~~~~-~---~---~~~~~~----~~~~~~~~~~~~--~--~~~~~l~~~l~~~~gi~v~~g~~~~~~~------------ 372 (407)
T 2zc0_A 320 ENHL-P---N---AEFTKP----IAGMFVMFFLPE--G--ADGISFANELMEREGVVVVPGKPFYTDE------------ 372 (407)
T ss_dssp HHHC-T---T---SCBCCC----SBSSEEEEECST--T--CCHHHHHHHHHHHTCEECBCSGGGCSSS------------
T ss_pred HHhC-C---C---CEEecC----CCcEEEEEEcCC--C--CCHHHHHHHHHHhCCeEEECchhccCCC------------
Confidence 7631 1 1 344444 245678888753 1 233 345566666699999887664320
Q ss_pred HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
...+.+|+|++.. |.+||+++++.|++++++-
T Consensus 373 --------------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 373 --------------------SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp --------------------CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 1136899999988 8999999999999988653
No 131
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.67 E-value=6.8e-16 Score=164.85 Aligned_cols=279 Identities=14% Similarity=0.065 Sum_probs=178.2
Q ss_pred HHHHHHHHHHc----CC--CC-CcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccCC-c
Q 007454 173 SAMKKRIMDFL----NI--SE-NDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSWP-R 222 (603)
Q Consensus 173 ~~aR~~Ia~~l----na--~~-~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~-~ 222 (603)
.+.|+.|++++ |+ ++ ++++++... ++ .......++..|+++..++.+.. +
T Consensus 78 ~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 157 (412)
T 2x5d_A 78 PRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGID 157 (412)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccC
Confidence 47888888888 85 56 688765321 11 12223345566888888888643 2
Q ss_pred cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEeccccCCCC--CCCCCCCC--
Q 007454 223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALGPKD--MDSFGLSL-- 294 (603)
Q Consensus 223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~-- 294 (603)
..++.++|++.|.. ++++|.++..+|.||.++|.+ .+ ++|+++|+++++|.++....- -...++..
T Consensus 158 ~~~d~~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 231 (412)
T 2x5d_A 158 FFNELERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVP 231 (412)
T ss_dssp HHHHHHHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred CCCCHHHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhcc
Confidence 23678888887752 578888999999999999964 23 468999999999999876320 01223322
Q ss_pred --CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454 295 --VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 370 (603)
Q Consensus 295 --~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e 370 (603)
.+.|+++.|++|+|| +.| +|++++++++++.+.... . ..
T Consensus 232 ~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~--------------------------------~---~~ 274 (412)
T 2x5d_A 232 GAKDIAVEFFTLSKSYN--MAGWRIGFMVGNPELVSALARIK--------------------------------S---YH 274 (412)
T ss_dssp TGGGTEEEEEECC-CCS--CTTSCCEEEEECHHHHHHHHHHH--------------------------------H---HH
T ss_pred CccCcEEEEecCccccC--CcccceEEEEcCHHHHHHHHHHH--------------------------------h---hh
Confidence 367899999999998 457 799999776554333100 0 01
Q ss_pred cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454 371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~ 450 (603)
.++.|.....++. ++++... -.++.+.++.+.+.++|.+
T Consensus 275 ~~~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~ 313 (412)
T 2x5d_A 275 DYGTFTPLQVAAI----------------------------------------AALEGDQ-QCVRDIARQYQQRRDVLVK 313 (412)
T ss_dssp CCCCCHHHHHHHH----------------------------------------HHHHSCS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHH----------------------------------------HHHhCCH-HHHHHHHHHHHHHHHHHHH
Confidence 2333444333222 2333211 1256777888889999999
Q ss_pred HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454 451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 530 (603)
Q Consensus 451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~ 530 (603)
.|.++ | ++++.| ..+..+.+.++..-+..-...++++|++++||.++.|..|..
T Consensus 314 ~L~~~------g---~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------------- 367 (412)
T 2x5d_A 314 GLREA------G---WMVENP----KASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD------------- 367 (412)
T ss_dssp HHHHH------T---CCCCCC----SBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG-------------
T ss_pred HHHHC------C---CEecCC----CeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC-------------
Confidence 99875 2 233333 224467777753100000123456666778999998877632
Q ss_pred HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
...+.||+|++. +.+|++++++.|+++++..
T Consensus 368 ---------------------~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 368 ---------------------YGDDHVRFALIE--NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp ---------------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 012589999997 8999999999999998763
No 132
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.67 E-value=9e-16 Score=176.73 Aligned_cols=297 Identities=12% Similarity=0.050 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeccC----------------------chHHHHHHH-HHHcCCEEEEEeccCC----c
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYES----------------------EAVEAMIRT-SEKRGARVMSAEFSWP----R 222 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~es----------------------~sV~~~~~~-a~~~Ga~V~~~~~~~~----~ 222 (603)
..+.++++.+|+++|++. .+++...+ +....+... ++..|+++++++..+. .
T Consensus 173 ~~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~ 251 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFI 251 (730)
T ss_dssp THHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCE
T ss_pred HHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCccccCcc
Confidence 467899999999999864 34332110 111122233 4567999888876432 2
Q ss_pred cccCHHHH-----HHHHhhcCCC---CCCe-eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC--CC----
Q 007454 223 LRINSEKL-----RKMVVSKGKK---KKQR-GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP--KD---- 286 (603)
Q Consensus 223 g~i~~~~L-----~~~l~~~~~~---~~~t-~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~--~~---- 286 (603)
+.++.++| +++|..+... ..++ +++++..- |.+|.++|++.| ++|+++|++|++|+++..+ ..
T Consensus 252 g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~ 330 (730)
T 1c4k_A 252 GGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMR 330 (730)
T ss_dssp EEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGG
T ss_pred CCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccC
Confidence 45777777 8888642000 1112 78888874 689999999966 5899999999999997531 10
Q ss_pred -CCCCCCCCCCCc----EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCccc
Q 007454 287 -MDSFGLSLVRPD----FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 361 (603)
Q Consensus 287 -m~~ldls~~~~D----flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 361 (603)
..++++..+++| +++.|+||++|+ |.|.|+++++++.+ .... ..+.. .. + ..
T Consensus 331 g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l---~g~~--~~i~~----~~-~--~~---------- 387 (730)
T 1c4k_A 331 NSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHI---KGQL--RYCDH----KH-F--NN---------- 387 (730)
T ss_dssp GGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGG---TTST--TCCCH----HH-H--HH----------
T ss_pred CcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhh---cCcc--cccCH----HH-H--HH----------
Confidence 024666566888 999999999886 88899999998753 1000 01100 00 0 00
Q ss_pred CcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHh-cCHHHHHHH
Q 007454 362 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMISRR 440 (603)
Q Consensus 362 ~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~-iGl~~i~~r 440 (603)
.... +..+|+++..++++. .|++++.. .|.+ ..++
T Consensus 388 -~~~~--~~stsp~~~~iaal~----------------------------------------aA~~~l~~~~g~~-~~~~ 423 (730)
T 1c4k_A 388 -SFNL--FMSTSPFYPMYAALD----------------------------------------VNAAMQEGEAGRK-LWHD 423 (730)
T ss_dssp -HHHH--HSCSSCCHHHHHHHH----------------------------------------HHHHHHSHHHHHH-HHHH
T ss_pred -HHHH--hCCCCCcHHHHHHHH----------------------------------------HHHHHHHhhhhHH-HHHH
Confidence 0011 467899998887775 46665544 3433 3467
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCC------------------------C------C---CC-----C-E
Q 007454 441 GRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIR------------------------F------D---RG-----P-A 480 (603)
Q Consensus 441 ~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~------------------------~------~---rg-----~-i 480 (603)
...++++++++|.+ +. .+++++|... . . .+ | .
T Consensus 424 ~~~~a~~lr~~L~~~i~--------g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~k 495 (730)
T 1c4k_A 424 LLITTIEARKKLIKAGS--------MFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNK 495 (730)
T ss_dssp HHHHHHHHHHHHHHTTC--------SSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTE
T ss_pred HHHHHHHHHHHHhhhCC--------CeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeE
Confidence 88889999999987 43 2677776420 0 0 11 1 1
Q ss_pred EEEEEccC---CC----CccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454 481 LAFNVFDW---KR----EKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 553 (603)
Q Consensus 481 vsFnv~~~---~g----~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 553 (603)
|.|++++. +| .-++...+.+.+.++||.++. .+
T Consensus 496 v~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~----------------------------------------~~ 535 (730)
T 1c4k_A 496 FMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK----------------------------------------SD 535 (730)
T ss_dssp EEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE----------------------------------------EC
T ss_pred EEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEE----------------------------------------CC
Confidence 77888642 11 114556666666666886531 11
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 554 ITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 554 ~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.||++++..+|.+|+++|+++|.++...
T Consensus 536 ~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 536 LNSILFLMTPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp SSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 258999999999999999999999998754
No 133
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.67 E-value=1.9e-15 Score=160.48 Aligned_cols=318 Identities=9% Similarity=-0.031 Sum_probs=199.0
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN- 184 (603)
Q Consensus 107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln- 184 (603)
.+.|+|+.+... +.++.+++++.+.+.... +. .+..+. -..+.|+.|+++++
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----------~~----~y~~~~-----------g~~~l~~~la~~~~~ 76 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDN-----------MN----QYTRGF-----------GHPALVKALSCLYGK 76 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGG-----------GG----SCCCTT-----------CCHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCcc-----------cc----CCCCCC-----------ChHHHHHHHHHHHHH
Confidence 567999998876 457788888765432100 00 001110 12367778888877
Q ss_pred -----CCC-CcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccC----------CccccC
Q 007454 185 -----ISE-NDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSW----------PRLRIN 226 (603)
Q Consensus 185 -----a~~-~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~----------~~g~i~ 226 (603)
+++ ++++++... +++.. ....++..|+++..+++++ .+..++
T Consensus 77 ~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d 156 (410)
T 3e2y_A 77 IYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFD 156 (410)
T ss_dssp HHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECC
T ss_pred HhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCC
Confidence 677 688775321 12211 2334556788888888752 244579
Q ss_pred HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCC---
Q 007454 227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALG----PKDMDSFGLSLV--- 295 (603)
Q Consensus 227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~--- 295 (603)
.++|++.+. +++++|.+...+|.||.++|. +.+ ++|+++|+++++|.++.. ++ ...++..+
T Consensus 157 ~~~l~~~~~------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~ 228 (410)
T 3e2y_A 157 PRELESKFS------SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGM 228 (410)
T ss_dssp HHHHHTTCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTC
T ss_pred HHHHHhhcC------CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCc
Confidence 999988875 268999999999999999754 433 468999999999998764 32 12233222
Q ss_pred -CCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC
Q 007454 296 -RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 372 (603)
Q Consensus 296 -~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G 372 (603)
+.++++.|++|.|| +.| +|+++.++++++.+..... ....
T Consensus 229 ~~~~i~~~S~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~~-----------------------------------~~~~ 271 (410)
T 3e2y_A 229 WERTITIGSAGKTFS--VTGWKLGWSIGPAHLIKHLQTVQQ-----------------------------------NSFY 271 (410)
T ss_dssp GGGEEEEEEHHHHSS--CGGGCCEEEECCHHHHHHHHHHHH-----------------------------------TTTC
T ss_pred cCeEEEEecchhhcC--CCCceEEEEEECHHHHHHHHHHHH-----------------------------------hhcc
Confidence 34589999999998 446 7888877665433321000 0112
Q ss_pred CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH------HhcCHHHHHHHHHHHHH
Q 007454 373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV------DSLGLTMISRRGRCLIN 446 (603)
Q Consensus 373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~------~~iGl~~i~~r~~~L~~ 446 (603)
+.+..+..++. .+++.. ..-.++.+.++.+.+++
T Consensus 272 ~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (410)
T 3e2y_A 272 TCATPLQAALA----------------------------------------EAFWIDIKRMDDPECYFNSLPKELEVKRD 311 (410)
T ss_dssp CCCHHHHHHHH----------------------------------------HHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHH----------------------------------------HHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence 23333332222 233310 01135677888889999
Q ss_pred HHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccC---------HHHHHHHHhcCCcEEeeCcccCc
Q 007454 447 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE---------PVLVQKLADRENISLSYGSLHHI 517 (603)
Q Consensus 447 ~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~---------~~~V~~Lad~~gI~lr~G~~C~~ 517 (603)
+|.+.|.++ | ++++.|. .+..+.+.+.+.... +. .+.+.++++++||.++.|..|..
T Consensus 312 ~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~ 377 (410)
T 3e2y_A 312 RMVRLLNSV------G---LKPIVPD----GGYFIIADVSSLGAD-LSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCD 377 (410)
T ss_dssp HHHHHHHTT------T---CEEEBCS----BSSEEEEECGGGCCC-CTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSC
T ss_pred HHHHHHHHC------C---CeecCCC----ccEEEEEEchhhhcc-cccccccccCHHHHHHHHHHHcCEEEeCchhhCC
Confidence 999999875 2 4555553 455666666553211 11 25667788889999999988854
Q ss_pred cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
.... ..+.+.||+|++. +.|||+++++.|++|
T Consensus 378 ~~~~-----------------------------~~~~~~iRis~~~--~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 378 SKSK-----------------------------PHFEKLVRFCFIK--KDSTLDAAEEIFRAW 409 (410)
T ss_dssp TTTH-----------------------------HHHTTEEEEECCC--CHHHHHHHHHHHHTC
T ss_pred CCCC-----------------------------CCCCCEEEEEEcC--CHHHHHHHHHHHHhc
Confidence 2110 0123699999987 999999999988764
No 134
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.67 E-value=3.5e-15 Score=156.72 Aligned_cols=262 Identities=10% Similarity=0.054 Sum_probs=170.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccC-chHHHH----------------------HHHHHHcCCEEEEEeccCCccccCHHH
Q 007454 173 SAMKKRIMDFLNISENDYVYDYES-EAVEAM----------------------IRTSEKRGARVMSAEFSWPRLRINSEK 229 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~----------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~~ 229 (603)
.+.|++|++++|+++++++++..+ +++..+ ...++..|+++..++.+ .+..++.++
T Consensus 61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~ 139 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL-DNWQLDLQG 139 (356)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC-TTSCCCHHH
T ss_pred HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC-CCCCCCHHH
Confidence 479999999999998899876432 122222 23334457777777765 345688888
Q ss_pred HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH----HHHhCCcEEEEeccccCCC-CCCCCCC-CCCCCcEEEEc
Q 007454 230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR----IAQENDWHILIDACALGPK-DMDSFGL-SLVRPDFLICS 303 (603)
Q Consensus 230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~----~a~e~g~~vlvDAaq~~~~-~m~~ldl-s~~~~Dflv~S 303 (603)
|++.+. +++++.++..+|.||.++|.+.+. .|+ +|+++++|.++.... ....+++ ...+.++++.|
T Consensus 140 l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s 211 (356)
T 1fg7_A 140 ISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT 211 (356)
T ss_dssp HHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred HHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEec
Confidence 877663 488999999999999999987553 345 899999999876422 0011232 34567899999
Q ss_pred ccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454 304 FYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS 381 (603)
Q Consensus 304 ~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g 381 (603)
++|+|| +.| +|++++++++++.+.... . . + +.|..+..+
T Consensus 212 ~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~------------~--------------------~--~---~~~~~~~~a 252 (356)
T 1fg7_A 212 LSKAFA--LAGLRCGFTLANEEVINLLMKVI------------A--------------------P--Y---PLSTPVADI 252 (356)
T ss_dssp SSSTTC--CGGGCCEEEEECHHHHHHHHHHS------------C--------------------S--S---CSCHHHHHH
T ss_pred chHhhc--CchhhhEEEEeCHHHHHHHHHhc------------C--------------------C--C---CCCHHHHHH
Confidence 999999 558 699999776544332100 0 0 1 223332222
Q ss_pred hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454 382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE 461 (603)
Q Consensus 382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~ 461 (603)
.. ++++....-.++...++.+.++++|.+.|.++.
T Consensus 253 ~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----- 287 (356)
T 1fg7_A 253 AA----------------------------------------QALSPQGIVAMRERVAQIIAEREYLIAALKEIP----- 287 (356)
T ss_dssp HH----------------------------------------HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHST-----
T ss_pred HH----------------------------------------HHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence 11 222211000156677788889999999998762
Q ss_pred CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEee-CcccCccCCchhhhhhHHHHHhhhccccc
Q 007454 462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSY-GSLHHIWFSDKYQKEKDNVLEKTDREAKS 540 (603)
Q Consensus 462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~-G~~C~~~~~~~~~~~~~~~l~~~~~~~~~ 540 (603)
+ +..+.|. .+..+.+.++ + ...+.+.+.++||.++. |..|.
T Consensus 288 ~---~~~~~~~----~~~~~~~~~~--~-----~~~l~~~L~~~gI~v~~~g~~~~------------------------ 329 (356)
T 1fg7_A 288 C---VEQVFDS----ETNYILARFK--A-----SSAVFKSLWDQGIILRDQNKQPS------------------------ 329 (356)
T ss_dssp T---EEEECCC----SSSEEEEEET--T-----HHHHHHHHHHTTEECEECTTSTT------------------------
T ss_pred C---ceEECCC----CCeEEEEECC--C-----HHHHHHHHHHCCEEEEECCCCCC------------------------
Confidence 1 3334442 4678888875 2 23344444788999997 75541
Q ss_pred ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
. .+.+|+|++ +.+|++++++.|+++
T Consensus 330 -----------~-~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 330 -----------L-SGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp -----------C-TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred -----------C-CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 1 148999998 689999999998765
No 135
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.66 E-value=2.7e-15 Score=158.90 Aligned_cols=273 Identities=10% Similarity=0.060 Sum_probs=172.0
Q ss_pred HHHHHHHHHc----C--CCCCcEEEeccC-ch----------------------HHHHHHHHHHcCCEEEEEeccCCccc
Q 007454 174 AMKKRIMDFL----N--ISENDYVYDYES-EA----------------------VEAMIRTSEKRGARVMSAEFSWPRLR 224 (603)
Q Consensus 174 ~aR~~Ia~~l----n--a~~~e~vf~~es-~s----------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~ 224 (603)
+.|+.|++++ | +++++++++... ++ .......++..|+++..+++++.+..
T Consensus 80 ~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~ 159 (398)
T 3ele_A 80 ETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQ 159 (398)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSS
T ss_pred HHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCc
Confidence 5666666665 4 677888775431 11 12233445667888888888755568
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHh------CCcEEEEeccccC----CCCCCCC
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQE------NDWHILIDACALG----PKDMDSF 290 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e------~g~~vlvDAaq~~----~~~m~~l 290 (603)
++.++|++.+.. +++++.++..+|.||.++|.+.+ ++|++ +|+++++|.++.. ++. .+.
T Consensus 160 ~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~-~~~ 232 (398)
T 3ele_A 160 IDFDALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIK-VPF 232 (398)
T ss_dssp CCHHHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCC-CCC
T ss_pred CCHHHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCC-cCC
Confidence 899999998853 68999999999999999996533 46777 8999999998764 321 234
Q ss_pred CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454 291 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 370 (603)
Q Consensus 291 dls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e 370 (603)
.....+.++++.|++|+||.+..++|+++++++...... ..... .. + . ..
T Consensus 233 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~--~~~~~-------~~-~-----------------~---~~ 282 (398)
T 3ele_A 233 VTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAE--LYAAV-------CG-A-----------------G---RA 282 (398)
T ss_dssp GGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHH--HHHHH-------HH-H-----------------H---HH
T ss_pred hHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHH--HHHHH-------HH-H-----------------h---hh
Confidence 345566789999999999832334899998887643110 00000 00 0 0 01
Q ss_pred cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454 371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~ 450 (603)
.++.+.+.+...+ +...++... ..++.+..+++|.+
T Consensus 283 ~~~~~~~~~~~~a-----------------------------------------~~~~l~~~~---~~~~~~~~~~~l~~ 318 (398)
T 3ele_A 283 LGYVCAPSLFQKM-----------------------------------------IVKCQGATG---DINAYKENRDLLYE 318 (398)
T ss_dssp TTCCCSCHHHHHH-----------------------------------------HTTCTTCCC---CHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHH-----------------------------------------HHHHhcCHH---HHHHHHHHHHHHHH
Confidence 1222221111111 111111111 23456677788888
Q ss_pred HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454 451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 530 (603)
Q Consensus 451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~ 530 (603)
.|.++ | ++++.|. .+..+.+.+++. +...+.+.+.++||.++.|..|..
T Consensus 319 ~L~~~------g---~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~------------- 367 (398)
T 3ele_A 319 GLTRI------G---YHCFKPD----GAFYMFVKALED-----DSNAFCEKAKEEDVLIVAADGFGC------------- 367 (398)
T ss_dssp HHHHH------T---CCEECCS----BSSEEEEECSSS-----CHHHHHHHHHTTTEECEESGGGTC-------------
T ss_pred HHHHc------C---CeecCCC----eeEEEEEEcCCC-----CHHHHHHHHHHCCEEEeCccccCC-------------
Confidence 88775 2 3455542 234477776643 234455566788999998866521
Q ss_pred HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.||+|++ ++.|||+++++.|++++++
T Consensus 368 -----------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 368 -----------------------PGWVRISYC--VDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp -----------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 158999998 7999999999999998764
No 136
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.66 E-value=3.4e-15 Score=160.45 Aligned_cols=286 Identities=14% Similarity=0.076 Sum_probs=183.0
Q ss_pred HHHHHHHHHHc----C---CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCcc
Q 007454 173 SAMKKRIMDFL----N---ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRL 223 (603)
Q Consensus 173 ~~aR~~Ia~~l----n---a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g 223 (603)
.+.|+.|++++ | +++++++++... .+.......++..|+++..+++++ ++
T Consensus 88 ~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~ 166 (425)
T 1vp4_A 88 PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-DG 166 (425)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-TE
T ss_pred HHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-CC
Confidence 46888888888 8 667888775321 112223344566788888888874 44
Q ss_pred ccCHHHHHHHHhhcCC--CCCCeeEE-EEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCCC--CCCCCCC-
Q 007454 224 RINSEKLRKMVVSKGK--KKKQRGLF-VFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPKD--MDSFGLS- 293 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~--~~~~t~Lv-~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~~--m~~ldls- 293 (603)
++.++|++.|...+. ...++++| +++..+|.||.++|.+. +++|+++|+++++|.++....- -...++.
T Consensus 167 -~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 245 (425)
T 1vp4_A 167 -MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK 245 (425)
T ss_dssp -ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHH
T ss_pred -CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHH
Confidence 899999999874100 00157887 68999999999999752 3468999999999999865210 0122332
Q ss_pred --CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454 294 --LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 369 (603)
Q Consensus 294 --~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 369 (603)
..+.++++.|++|+|| + | +|++++++++++.+.... . .
T Consensus 246 ~~~~~~~i~~~s~sK~~~-~--G~r~G~~~~~~~~~~~l~~~~------------~-----------------------~ 287 (425)
T 1vp4_A 246 IGGPERVVLLNTFSKVLA-P--GLRIGMVAGSKEFIRKIVQAK------------Q-----------------------S 287 (425)
T ss_dssp HHCTTTEEEEEESTTTTC-G--GGCEEEEECCHHHHHHHHHHH------------H-----------------------H
T ss_pred hCCCCCEEEEeccccccc-c--ccceEEEeeCHHHHHHHHHHh------------h-----------------------h
Confidence 2356799999999999 4 6 699998866544332100 0 0
Q ss_pred ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 007454 370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV-DSLGLTMISRRGRCLINWL 448 (603)
Q Consensus 370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~-~~iGl~~i~~r~~~L~~~L 448 (603)
...+.|..+..++. ++++.. ..-.++.+.++.+..+++|
T Consensus 288 ~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l 327 (425)
T 1vp4_A 288 ADLCSPAITHRLAA----------------------------------------RYLERYDLLEQLKPTIELYRRKRTVM 327 (425)
T ss_dssp HHSSCCHHHHHHHH----------------------------------------HHHHHSCHHHHTHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHH----------------------------------------HHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 01122333332221 244321 0012566777788888999
Q ss_pred HHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEcc-CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454 449 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFD-WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 527 (603)
Q Consensus 449 ~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~-~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~ 527 (603)
.+.|.++. + +.|.++++.|. .+..+.+.+++ .++. .+.++|.++ ||.++.|..|...
T Consensus 328 ~~~L~~~~-~---~~~g~~~~~~~----~g~~~~~~~~~~~~~~----~l~~~l~~~-gi~v~~g~~f~~~--------- 385 (425)
T 1vp4_A 328 LNALEEYF-S---DIPGVKWVKSE----GGLFIWLTLPEGFDTW----EMFEYAKRK-KVFYVPGRVFKVY--------- 385 (425)
T ss_dssp HHHHHHHS-T---TSTTCEECCCS----BSSEEEEECCTTCCTT----TTHHHHHHH-TEECEEGGGGCTT---------
T ss_pred HHHHHHhC-C---CCCceEEecCC----ccEEEEEEcCCCCCHH----HHHHHHHHC-CCEEECchhhcCC---------
Confidence 99998641 1 11125666552 46688888863 3332 235566655 9999988665421
Q ss_pred HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
....+.+|+|++.. |.+||+++++.|++++.+-
T Consensus 386 -----------------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 386 -----------------------DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp -----------------------CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 01236899999986 9999999999999988654
No 137
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.65 E-value=1.4e-15 Score=162.00 Aligned_cols=320 Identities=15% Similarity=0.063 Sum_probs=190.4
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH--c
Q 007454 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF--L 183 (603)
Q Consensus 107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~--l 183 (603)
.+.++|+.+..+ +.++.+++++.+.+... .++.....|+. .....+.|++|+++ .
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--------------------~~~~~~~~y~~--~~g~~~lr~~la~~l~~ 90 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARL--------------------SSPTTCRGYGP--DFGLPALRQKLSEDFYR 90 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHH--------------------TSSSCCCCCCC--TTCCHHHHHHHHHTTST
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhcc--------------------cccccccCCCC--CCCCHHHHHHHHHHHHc
Confidence 457899888775 46777888776533210 00000111111 01134789999999 4
Q ss_pred C-CCCCcEEEeccC-chHHHH--------------------HHHHHHcCCE-EEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454 184 N-ISENDYVYDYES-EAVEAM--------------------IRTSEKRGAR-VMSAEFSWPRLRINSEKLRKMVVSKGKK 240 (603)
Q Consensus 184 n-a~~~e~vf~~es-~sV~~~--------------------~~~a~~~Ga~-V~~~~~~~~~g~i~~~~L~~~l~~~~~~ 240 (603)
| +++++++++... +++..+ ...++..|++ +..++++. .+.+.. ++++
T Consensus 91 g~~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~-~l~~-------- 160 (400)
T 3asa_A 91 GFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQ-ENAFFP-EFPE-------- 160 (400)
T ss_dssp TSSCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCG-GGTTCC-CCCT--------
T ss_pred CCCCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccch-hcCccc-Chhh--------
Confidence 7 778888876432 122222 2233445666 66666542 111111 1111
Q ss_pred CCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc-CCCC-CCCCCCCCCC----CcEEEEcccccCCC
Q 007454 241 KKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL-GPKD-MDSFGLSLVR----PDFLICSFYQIFGE 310 (603)
Q Consensus 241 ~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~-~~~~-m~~ldls~~~----~Dflv~S~hK~fG~ 310 (603)
.+++++|.+...+|.||.++|.+. +++|+++|+++++|.++. ...+ ..+.++..+. .++++.|++|+||
T Consensus 161 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g- 239 (400)
T 3asa_A 161 DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG- 239 (400)
T ss_dssp TCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT-
T ss_pred ccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC-
Confidence 135788988899999999999753 246899999999999876 3210 0233443332 3589999999999
Q ss_pred CCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcC
Q 007454 311 NPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG 388 (603)
Q Consensus 311 ~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~ 388 (603)
+.| +|+++++++....+. ..+. ..+ ........++.|..+..++.
T Consensus 240 -~~GlriG~~~~~~~~~~~~~-----~~~~------~~~----------------~~~~~~~~~~~~~~~~~a~~----- 286 (400)
T 3asa_A 240 -FAGIRLGWTVIPQELTYADG-----HFVI------QDW----------------ERFLSTTFNGASIPAQEAGV----- 286 (400)
T ss_dssp -TTTCCCEEEECCTTCBCTTS-----CBHH------HHH----------------HHHHHHHCCCCCHHHHHHHH-----
T ss_pred -CcchheeEEeeChhhccchh-----hhHH------HHH----------------HHHhccCccCCChHHHHHHH-----
Confidence 457 799999887643221 0000 000 00000112345555443322
Q ss_pred ccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 007454 389 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI 468 (603)
Q Consensus 389 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~I 468 (603)
.+++ ...++.+.++.+.+.++|.+.|.++ | +++
T Consensus 287 -----------------------------------~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~ 319 (400)
T 3asa_A 287 -----------------------------------AGLS---ILPQLEAIHYYRENSDLLRKALLAT------G---FEV 319 (400)
T ss_dssp -----------------------------------HHHH---HTTTCHHHHHHHHHHHHHHHHHHHT------T---CEE
T ss_pred -----------------------------------HHhC---cHHHHHHHHHHHHHHHHHHHHHHHC------C---Cee
Confidence 2343 2247788888999999999999875 2 456
Q ss_pred eCCCCCCCCCCEEEEE-Ecc-CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccc
Q 007454 469 YGPKIRFDRGPALAFN-VFD-WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 546 (603)
Q Consensus 469 ygp~~~~~rg~ivsFn-v~~-~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 546 (603)
++|. .+..+.+. +++ .+.. +++.+|++++||.++.|..|...
T Consensus 320 ~~~~----~~~~~~~~~~~~~~~~~----~~~~~l~~~~gv~v~~g~~f~~~---------------------------- 363 (400)
T 3asa_A 320 FGGE----HAPYLWVKPTQANISDR----DLFDFFLREYHIAITPGIGFGRS---------------------------- 363 (400)
T ss_dssp EECS----SSSEEEEECCCTTCCTT----THHHHHHHHHSEECEEGGGGCGG----------------------------
T ss_pred eCCC----CceEEEEeccCCCCCHH----HHHHHHHHhCCEEEeChhHhCCC----------------------------
Confidence 6542 46778888 653 2222 34667777789999988776321
Q ss_pred ccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 547 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 547 ~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+.+.||+| ++++.+|++++++.|+++++.
T Consensus 364 ------~~~~iRis--~~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 364 ------GSGFVRFS--SLGKREDILAACERLQMAPAL 392 (400)
T ss_dssp ------GTTCEEEE--CCSCHHHHHHHHHHHHC----
T ss_pred ------CCCEEEEE--eeCCHHHHHHHHHHHHHHHHh
Confidence 12589999 478999999999999888753
No 138
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.65 E-value=4.2e-15 Score=161.39 Aligned_cols=328 Identities=11% Similarity=0.044 Sum_probs=196.4
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHH-HHHHHHHHHcCCCCCcEEE
Q 007454 114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES-AMKKRIMDFLNISENDYVY 192 (603)
Q Consensus 114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~-~aR~~Ia~~lna~~~e~vf 192 (603)
.++..++++.+++++.+.+... |..+++.+.+..|....+.++ .+|+++++++|++...+++
T Consensus 51 ~~~~~~~~~~v~~a~~~~~~~~-----------------~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~ 113 (447)
T 3h7f_A 51 IASENFVPRAVLQAQGSVLTNK-----------------YAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQP 113 (447)
T ss_dssp CTTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC
T ss_pred ecCCCCCCHHHHHHHHHHhcCC-----------------ccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEe
Confidence 3455677999999987654210 123566665554554444444 4559999999997643323
Q ss_pred eccCchHHHHHHHHHHcCCEEE--------------------------EEeccCCccccCHHHHHHHHhhcCCCCCCeeE
Q 007454 193 DYESEAVEAMIRTSEKRGARVM--------------------------SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGL 246 (603)
Q Consensus 193 ~~es~sV~~~~~~a~~~Ga~V~--------------------------~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~L 246 (603)
..-++++..++..+.+.|.+|. ..+++..++.++.++|++.+... ++++
T Consensus 114 ~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~ 188 (447)
T 3h7f_A 114 HSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEF-----RPKV 188 (447)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHH-----CCSE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhc-----CCeE
Confidence 3323344433443333444443 33333234568999999998642 4678
Q ss_pred EEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 247 FVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 247 v~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
+.+...+|.++. |++.+ ++|+++|+++++|.+|..+. . ...+.- .++|++++|+||+||+ |.| |+++.++
T Consensus 189 i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~~-~~~di~~~s~sK~l~G-~~g-G~i~~~~ 262 (447)
T 3h7f_A 189 IIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSPV-PHADVVSTTVHKTLGG-GRS-GLIVGKQ 262 (447)
T ss_dssp EEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCST-TTCSEEEEESSGGGCC-CSC-EEEEECG
T ss_pred EEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCCC-CCCcEEEecCCcCCCC-CCe-EEEEECH
Confidence 887666665554 99866 58999999999999975531 0 011111 2579999999999887 877 9998887
Q ss_pred CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454 323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE 402 (603)
Q Consensus 323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~ 402 (603)
++.+.+.+...+ ...|+++...+++++
T Consensus 263 ~~~~~l~~~~~~----------------------------------~~~~~~~~~~~~a~~------------------- 289 (447)
T 3h7f_A 263 QYAKAINSAVFP----------------------------------GQQGGPLMHVIAGKA------------------- 289 (447)
T ss_dssp GGHHHHHHHHTT----------------------------------TTCSSCCHHHHHHHH-------------------
T ss_pred HHHHHHhhhcCC----------------------------------cccCCccHHHHHHHH-------------------
Confidence 654433321100 123455555555543
Q ss_pred hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454 403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA 482 (603)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs 482 (603)
.++..+...+++...++++...++|.+.|.++.. ..+.+.++.+. .....+.
T Consensus 290 ---------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~g~~~~~~~---~~~~~~~ 341 (447)
T 3h7f_A 290 ---------------------VALKIAATPEFADRQRRTLSGARIIADRLMAPDV----AKAGVSVVSGG---TDVHLVL 341 (447)
T ss_dssp ---------------------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHH----HHTTCEEGGGS---CSSSEEE
T ss_pred ---------------------HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccc----cCCCeEEecCC---CCCCEEE
Confidence 3444332224567777888888888888876400 00013444321 2345666
Q ss_pred EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454 483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG 562 (603)
Q Consensus 483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg 562 (603)
+.+.+. -+....+.+++++.||.++.... ... .. .....+.+|+++.
T Consensus 342 ~~~~~~---~~~~~~~~~~l~~~GI~v~~~~i---~~~-~~--------------------------~p~~~~~lRig~~ 388 (447)
T 3h7f_A 342 VDLRDS---PLDGQAAEDLLHEVGITVNRNAV---PND-PR--------------------------PPMVTSGLRIGTP 388 (447)
T ss_dssp EECTTS---SCCHHHHHHHHHHTTEECBC-------------------------------------------CEEEEECH
T ss_pred EEcCCC---CCCHHHHHHHHHHCCeEEecccC---CCC-CC--------------------------CCCCCCceeccCH
Confidence 666432 24556788888889999873210 000 00 0111257999988
Q ss_pred CC----CCHHHHHHHHHHHHHHHhh
Q 007454 563 YL----ANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 563 ~~----tt~eDVd~l~~~l~~~l~~ 583 (603)
.. .+.+||+++++.|.+.|+.
T Consensus 389 ~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 389 ALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred HHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 77 4689999999999998865
No 139
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.65 E-value=6.5e-16 Score=164.94 Aligned_cols=250 Identities=10% Similarity=0.074 Sum_probs=165.7
Q ss_pred HHHHHcCCEEEEEeccC-----------CccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHH
Q 007454 204 RTSEKRGARVMSAEFSW-----------PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIA 268 (603)
Q Consensus 204 ~~a~~~Ga~V~~~~~~~-----------~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a 268 (603)
..++..|+++..+++++ .+..++.++|++.+.. ++++++++..+|.||.++| ++.+ ++|
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~ 203 (422)
T 3fvs_A 130 PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSREELELVASLC 203 (422)
T ss_dssp HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC------CceEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence 44566789999998874 1335899999888753 6899999999999999996 5534 478
Q ss_pred HhCCcEEEEeccccC----CCCCCCCCCCCC----CCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCcee
Q 007454 269 QENDWHILIDACALG----PKDMDSFGLSLV----RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVS 338 (603)
Q Consensus 269 ~e~g~~vlvDAaq~~----~~~m~~ldls~~----~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~ 338 (603)
+++|+++++|.++.. ++ ...++..+ +.++++.|++|.|| +.| +|++++++++++.+....
T Consensus 204 ~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~------ 273 (422)
T 3fvs_A 204 QQHDVVCITDEVYQWMVYDGH--QHISIASLPGMWERTLTIGSAGKTFS--ATGWKVGWVLGPDHIMKHLRTVH------ 273 (422)
T ss_dssp HHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHHT--CGGGCCEEEECCHHHHHHHHHHH------
T ss_pred HHcCcEEEEEccchhhccCCC--CCCChhhcccccCcEEEEecchhccC--CccceEEEEEeCHHHHHHHHHHH------
Confidence 999999999998764 33 22333322 45599999999998 446 788887765543332100
Q ss_pred ccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCC
Q 007454 339 LLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGG 418 (603)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 418 (603)
. ....+.|..+..++.
T Consensus 274 --------------------------~---~~~~~~~~~~~~a~~----------------------------------- 289 (422)
T 3fvs_A 274 --------------------------Q---NSVFHCPTQSQAAVA----------------------------------- 289 (422)
T ss_dssp --------------------------H---TTTCCCCHHHHHHHH-----------------------------------
T ss_pred --------------------------h---hccCCCCcHHHHHHH-----------------------------------
Confidence 0 012233333333322
Q ss_pred chhHHHHHHHH------HhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC---
Q 007454 419 SEIECRGLDQV------DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--- 489 (603)
Q Consensus 419 ~~~~~~ald~~------~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--- 489 (603)
++++.. ..-.++.+.++.+.++++|.+.|.++ | ++++.|. .+..+.+.+....
T Consensus 290 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~~~~~~ 351 (422)
T 3fvs_A 290 -----ESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV------G---LKPIIPQ----GSYFLITDISDFKRKM 351 (422)
T ss_dssp -----HHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT------T---CEEEBCS----BSSEEEEECHHHHHHC
T ss_pred -----HHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc------C---CeecCCC----eeeEEEEechhhcccc
Confidence 234321 01136778888999999999999875 2 4555553 3556666664311
Q ss_pred -------CCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454 490 -------REKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG 562 (603)
Q Consensus 490 -------g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg 562 (603)
.+....+.+.++++++||.++.|..|..... ...+.+.||+|++
T Consensus 352 ~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~-----------------------------~~~~~~~iRis~~ 402 (422)
T 3fvs_A 352 PDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPH-----------------------------QKHFDHYIRFCFV 402 (422)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHH-----------------------------HTTSCSEEEEECC
T ss_pred cccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcC-----------------------------CCCCCCeEEEEec
Confidence 0000225567778888999999988864210 0123479999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 007454 563 YLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 563 ~~tt~eDVd~l~~~l~~~l~ 582 (603)
. |.+||+++++.|++++.
T Consensus 403 ~--~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 403 K--DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp C--CHHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHh
Confidence 8 99999999999998874
No 140
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.65 E-value=3e-14 Score=148.33 Aligned_cols=262 Identities=9% Similarity=-0.011 Sum_probs=165.2
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCc-hHH-------------------HHHHHHHHcCCEEEEEec-cCCccccCHHHHH
Q 007454 173 SAMKKRIMDFLNISENDYVYDYESE-AVE-------------------AMIRTSEKRGARVMSAEF-SWPRLRINSEKLR 231 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV~-------------------~~~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~ 231 (603)
.+.|++|++++|+++++++++.... ++. .....++..|+++..+++ +. ...++.
T Consensus 53 ~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~---- 127 (350)
T 3fkd_A 53 GTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFRGSRSLIAIPSFAEYEDACRMYEHEVCFYPSNED-IGEADF---- 127 (350)
T ss_dssp HHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHTTCEEEEEETTSC-GGGSCC----
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHCCCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCc-cccCcc----
Confidence 3789999999999999998864321 222 223445556777777776 42 222221
Q ss_pred HHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCC-cEEEEeccccCCCC---CCCCCCCCCCCcEEEEcccc
Q 007454 232 KMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEND-WHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQ 306 (603)
Q Consensus 232 ~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g-~~vlvDAaq~~~~~---m~~ldls~~~~Dflv~S~hK 306 (603)
++++++.++..+|.||.++|++.+ ++++..+ .++++|.++..... .....+...+.++++.|++|
T Consensus 128 ----------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 197 (350)
T 3fkd_A 128 ----------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSH 197 (350)
T ss_dssp ----------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHH
T ss_pred ----------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCch
Confidence 268899999999999999999865 4666654 69999998653210 01122334566799999999
Q ss_pred cCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhh
Q 007454 307 IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 386 (603)
Q Consensus 307 ~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~ 386 (603)
+||.+..++|++++++++.+.+.... ...++|..+..+
T Consensus 198 ~~~~~G~r~G~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~----- 235 (350)
T 3fkd_A 198 AYGIPGLRIGYIVANKDFMKRVAAFS-------------------------------------TPWAVNALAIEA----- 235 (350)
T ss_dssp HHSCGGGCCEEEECCHHHHHHHHTTC-------------------------------------CTTCSCHHHHHH-----
T ss_pred hccCcchheEeEEeCHHHHHHHHHhC-------------------------------------CCCCCCHHHHHH-----
Confidence 99832223788887655543332110 112233333222
Q ss_pred cCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454 387 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG--LTMISRRGRCLINWLVNALMKLQHPNTEGNA 464 (603)
Q Consensus 387 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG--l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p 464 (603)
+...++..+ ++.+.++. .++++|.+.|.+++
T Consensus 236 --------------------------------------~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~~~-------- 268 (350)
T 3fkd_A 236 --------------------------------------AKFILIHPAQFTLPIRKWQ-RNTVDFITALNRLD-------- 268 (350)
T ss_dssp --------------------------------------HHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHHST--------
T ss_pred --------------------------------------HHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhcCC--------
Confidence 222222222 23344443 77888888898752
Q ss_pred eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454 465 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN 544 (603)
Q Consensus 465 lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 544 (603)
.++++.+ .+..+.+.+++.+ ..+++++|.+++||.++.|..|..
T Consensus 269 ~~~~~~~-----~~~~~~~~~~~~~----~~~l~~~L~~~~gi~v~~g~~f~~--------------------------- 312 (350)
T 3fkd_A 269 GVEVHPS-----GTTFFLLRLKKGT----AAELKKYMLEEYNMLIRDASNFRG--------------------------- 312 (350)
T ss_dssp TEEECCC-----SSSEEEEEESSSC----HHHHHHHHHHTTCEECEECTTSTT---------------------------
T ss_pred CcEECCC-----CCcEEEEECCCCC----HHHHHHHHHHHCCEEEEeCccCCC---------------------------
Confidence 2666533 4677778887542 123455566559999999977731
Q ss_pred ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
...+.||+|++ +.+|+++|+++|++++.+.
T Consensus 313 -------~~~~~iRis~~---~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 313 -------LDESYVRITTQ---RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp -------CCTTEEEEECC---CHHHHHHHHHHHHHHHTC-
T ss_pred -------CCCCEEEEEcC---CHHHHHHHHHHHHHHHHHh
Confidence 12369999987 8999999999999987653
No 141
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.65 E-value=1.1e-15 Score=163.39 Aligned_cols=274 Identities=15% Similarity=0.071 Sum_probs=178.1
Q ss_pred HHHHHHHHHHc----CCC--C-CcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCCcc
Q 007454 173 SAMKKRIMDFL----NIS--E-NDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWPRL 223 (603)
Q Consensus 173 ~~aR~~Ia~~l----na~--~-~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~~g 223 (603)
.+.|++|++++ |++ + ++++++... +++.. ....++..|+++..++.++.+.
T Consensus 88 ~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 167 (404)
T 2o1b_A 88 EAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHY 167 (404)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccC
Confidence 46888888888 864 3 678775432 12222 2233456788888888764233
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccccCCCC-CCCCCCCCC---
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKD-MDSFGLSLV--- 295 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~~~~-m~~ldls~~--- 295 (603)
.++.++|++.|.. ++++|.++..+|.||.++|.+ ++++|+++|+++++|.++....- -.+.++..+
T Consensus 168 ~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 241 (404)
T 2o1b_A 168 LPDWSKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENG 241 (404)
T ss_dssp CCCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTH
T ss_pred cCCHHHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCC
Confidence 4788899888863 588999988899999999854 23478999999999998865320 012232222
Q ss_pred -CCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC
Q 007454 296 -RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA 372 (603)
Q Consensus 296 -~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G 372 (603)
+.|+++.|++|+|| +.| +|+++.++++++.+.... . ...+
T Consensus 242 ~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~--------------------------------~---~~~~ 284 (404)
T 2o1b_A 242 KDVAIEIYSLSKGYN--MSGFRVGFAVGNKDMIQALKKYQ--------------------------------T---HTNA 284 (404)
T ss_dssp HHHEEEEEESTTTTT--CGGGCCEEEEECHHHHHHHHHHH--------------------------------H---HHCC
T ss_pred CCCEEEEEecchhcc--CchhheEeEecCHHHHHHHHHHH--------------------------------h---hccC
Confidence 46799999999998 447 699988776544333100 0 0122
Q ss_pred CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 007454 373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL 452 (603)
Q Consensus 373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L 452 (603)
+.|.....++. ++++... -.++++.++.+.+.++|.+.|
T Consensus 285 ~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~~L 323 (404)
T 2o1b_A 285 GMFGALQDAAI----------------------------------------YALNHYD-DFLEEQSNVFKTRRDRFEAML 323 (404)
T ss_dssp CCCHHHHHHHH----------------------------------------HHHHHCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH----------------------------------------HHHhcCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33444333322 3443311 136677788888999999999
Q ss_pred hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454 453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 531 (603)
Q Consensus 453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l 531 (603)
.++ | ++++.|. .+-.+.+.+++ + ++. +++++|++++||.++.|..|...
T Consensus 324 ~~~------g---~~~~~~~----~g~~~~~~~~~--~--~~~~~l~~~l~~~~gi~v~~g~~f~~~------------- 373 (404)
T 2o1b_A 324 AKA------D---LPFVHAK----GGIYVWLETPP--G--YDSEQFEQFLVQEKSILVAPGKPFGEN------------- 373 (404)
T ss_dssp HHT------T---CCEECCC----BSSEEEEECCT--T--CCHHHHHHHHHHHHCEECEESGGGCGG-------------
T ss_pred Hhc------C---CeecCCC----cceEEEEeCCC--C--CCHHHHHHHHHHHCCEEEeCchhhCcC-------------
Confidence 875 2 3445442 23346677753 1 222 34566677789999998766320
Q ss_pred HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|++. +.+|++++++.|++++++
T Consensus 374 ---------------------~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 374 ---------------------GNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp ---------------------GTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred ---------------------CCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 12589999996 788999999999888753
No 142
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.64 E-value=2.3e-15 Score=162.68 Aligned_cols=104 Identities=14% Similarity=0.190 Sum_probs=78.6
Q ss_pred HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454 206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP 284 (603)
Q Consensus 206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~ 284 (603)
++..|+++..+++++.++.++.++|++.|.. +|++|++++ .+|...|++.+ ++|+++|+++++|++|..+
T Consensus 127 ~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g 197 (437)
T 3bb8_A 127 TIQNGLIPVFVDVDIPTYNVNASLIEAAVSD------KTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALG 197 (437)
T ss_dssp HHHTTCEEEECCEETTTTEECGGGHHHHCCT------TEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTT
T ss_pred HHHcCCEEEEEeccCccCCcCHHHHHHhcCC------CCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccC
Confidence 4456888888888754678899999998853 688988875 58999999865 5899999999999999987
Q ss_pred CCCCCCCCCCCC--CcEEEEcccccCCCCCCceEEEEEeC
Q 007454 285 KDMDSFGLSLVR--PDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 285 ~~m~~ldls~~~--~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
. .. +...++ +|++++||+|.++. |.|.|++++.+
T Consensus 198 ~--~~-~~~~~~~~~d~~~~s~~~~k~l-~~g~gg~~~~~ 233 (437)
T 3bb8_A 198 S--TY-DGKMAGTFGDIGTVSFYPAKHI-TMGEGGAVFTQ 233 (437)
T ss_dssp C--EE-TTEETTSSSSEEEEECSTTSSS-CCSSCEEEEES
T ss_pred c--eE-CCeecccccCEEEEECcCCcCC-CCCCeEEEEeC
Confidence 6 23 555555 89999997665544 44555555544
No 143
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.64 E-value=1.6e-15 Score=157.42 Aligned_cols=184 Identities=9% Similarity=0.026 Sum_probs=116.0
Q ss_pred CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE 187 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~ 187 (603)
..||||++..+++++.+++++.+.... ...|+. .....+.|++|++++|++
T Consensus 4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~--------------------------~~~y~~--~~~~~~l~~~la~~~g~~- 54 (347)
T 1jg8_A 4 MMIDLRSDTVTKPTEEMRKAMAQAEVG--------------------------DDVYGE--DPTINELERLAAETFGKE- 54 (347)
T ss_dssp -CEECSCGGGCCCCHHHHHHHHTCCCC--------------------------CGGGTC--CHHHHHHHHHHHHHHTCS-
T ss_pred eEEEeccccCCCCCHHHHHHHhcCCCC--------------------------CcccCC--ChHHHHHHHHHHHHhCCc-
Confidence 468999999999888888887643110 001111 123457889999999974
Q ss_pred CcEEEecc-C---------------------chHHHH---HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454 188 NDYVYDYE-S---------------------EAVEAM---IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK 242 (603)
Q Consensus 188 ~e~vf~~e-s---------------------~sV~~~---~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~ 242 (603)
+.++... + ...... ...++..|+++..+ .+ +++.++.++|++.|.......+
T Consensus 55 -~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~ 131 (347)
T 1jg8_A 55 -AALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNGAMDPDDVRKAIRPRNIHFP 131 (347)
T ss_dssp -EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETTEECHHHHHHHSCCSCTTSC
T ss_pred -eEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCCccCHHHHHHHhcccccccc
Confidence 3333211 1 111111 11345578888887 44 3567899999999863100012
Q ss_pred CeeEEEEeCccccc-cccccHHH----HHHHHhCCcEEEEeccccCCC-CCCCCCCCC--CCCcEEEEcccccCCCCCCc
Q 007454 243 QRGLFVFPLHSRMT-GARYPYLW----MRIAQENDWHILIDACALGPK-DMDSFGLSL--VRPDFLICSFYQIFGENPSG 314 (603)
Q Consensus 243 ~t~Lv~~~~~Sn~T-G~~~pl~~----i~~a~e~g~~vlvDAaq~~~~-~m~~ldls~--~~~Dflv~S~hK~fG~~P~G 314 (603)
+|++|.++..+|.| |.++|.+. +++|+++|++|++|+++..+. .....++.. .++|.+++|+||++|. |.|
T Consensus 132 ~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~-~~G 210 (347)
T 1jg8_A 132 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCA-PVG 210 (347)
T ss_dssp CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCC-SSC
T ss_pred CceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCC-Cce
Confidence 68999999999999 99999753 346899999999999874310 000122221 3689999999999995 544
Q ss_pred eEEEEEeCCCC
Q 007454 315 FGCLFVKKSTV 325 (603)
Q Consensus 315 ~G~L~vkk~~~ 325 (603)
|+++.+++.+
T Consensus 211 -~~~~~~~~~~ 220 (347)
T 1jg8_A 211 -SVVVGDRDFI 220 (347)
T ss_dssp -EEEEECHHHH
T ss_pred -EEEEcCHHHH
Confidence 2444455443
No 144
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.64 E-value=6.3e-14 Score=149.74 Aligned_cols=320 Identities=12% Similarity=0.100 Sum_probs=190.0
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|.++. ++.++.+++++.+.+... .+.... ++ ......+.|++|+
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~--------------------~~~~~~--~~--~~~~~~~l~~~la 94 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL--------------------SHTCFQ--VL--AYEPYLELCEIMN 94 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC--------------------SCCCTT--TE--ECHHHHHHHHHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC--------------------CCcccc--cc--CCHHHHHHHHHHH
Confidence 45678998643 346788999887654311 111000 11 1245678999999
Q ss_pred HHcCCC-CCcEEEeccC-chHHHHHH---HHHHcCCE-----------------------------------EEEEeccC
Q 007454 181 DFLNIS-ENDYVYDYES-EAVEAMIR---TSEKRGAR-----------------------------------VMSAEFSW 220 (603)
Q Consensus 181 ~~lna~-~~e~vf~~es-~sV~~~~~---~a~~~Ga~-----------------------------------V~~~~~~~ 220 (603)
++++.+ +++++|+... +++..++. ....+| + |..+++++
T Consensus 95 ~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~ 173 (426)
T 1sff_A 95 QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173 (426)
T ss_dssp HHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCB
T ss_pred HhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCc
Confidence 999433 3677776543 34444333 222223 3 33344321
Q ss_pred ----CccccCHHHHHHHHhhcCCCCCCeeEEEE-eCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--C
Q 007454 221 ----PRLRINSEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--M 287 (603)
Q Consensus 221 ----~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m 287 (603)
..+.++.++|++.|.... ..+++++|.+ |..+| ||.+.| ++.+ ++|+++|+++++|.++. .+.. +
T Consensus 174 ~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~ 251 (426)
T 1sff_A 174 PLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL 251 (426)
T ss_dssp GGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred cccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccch
Confidence 012356788888886310 0125778877 56677 997777 7755 58999999999999877 2221 1
Q ss_pred CCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccc
Q 007454 288 DSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 365 (603)
Q Consensus 288 ~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 365 (603)
..++.....+|++ |+.|+|| | | +|++++++++++.+.+...++
T Consensus 252 ~~~~~~~~~~di~--s~sK~~~--~-GlriG~~~~~~~~~~~l~~~~~~~------------------------------ 296 (426)
T 1sff_A 252 FAMEQMGVAPDLT--TFAKSIA--G-GFPLAGVTGRAEVMDAVAPGGLGG------------------------------ 296 (426)
T ss_dssp SGGGGTTSCCSEE--EECGGGG--T-SSCCEEEEEEHHHHTTSCTTSBCC------------------------------
T ss_pred hhhhhcCCCCCEE--EEccccc--C-CCceEEEEEcHHHHhhhccCCcCc------------------------------
Confidence 1233333458977 5569999 7 8 599999987765554210000
Q ss_pred ccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH
Q 007454 366 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI 445 (603)
Q Consensus 366 ~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~ 445 (603)
.-+.|..+.+++. ++++++.+ +.+.++++.+.
T Consensus 297 -----~~~~~~~~~~a~~----------------------------------------aal~~~~~---~~~~~~~~~~~ 328 (426)
T 1sff_A 297 -----TYAGNPIACVAAL----------------------------------------EVLKVFEQ---ENLLQKANDLG 328 (426)
T ss_dssp -----SSSSCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHH
T ss_pred -----CCCCCHHHHHHHH----------------------------------------HHHHHHHh---cCHHHHHHHHH
Confidence 0012333332222 56776654 24567888889
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC----CCccCHHHHHHHHhcCCcEEeeCcccCccCCc
Q 007454 446 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK----REKIEPVLVQKLADRENISLSYGSLHHIWFSD 521 (603)
Q Consensus 446 ~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~----g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~ 521 (603)
+++.++|.++.. ..+.+..+- ..+.++.+.+.+.. ...+....+.+.+.++||.++.|..
T Consensus 329 ~~l~~~l~~~~~----~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~------- 392 (426)
T 1sff_A 329 QKLKDGLLAIAE----KHPEIGDVR-----GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP------- 392 (426)
T ss_dssp HHHHHHHHHHHH----TCTTEEEEE-----EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-------
T ss_pred HHHHHHHHHHHH----hCCCeEEEE-----EEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-------
Confidence 999999877520 023233221 13788999885411 0011223343334457999876521
Q ss_pred hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|+++.+|.+|++++++.|+++++.
T Consensus 393 -------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 393 -------------------------------YYNVLRILVPLTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp -------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 0258999999999999999999999998753
No 145
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.63 E-value=1.6e-15 Score=166.37 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEecc-----------------------CchHHH-HHHHHHHcCCEEEEEeccCCcccc
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYE-----------------------SEAVEA-MIRTSEKRGARVMSAEFSWPRLRI 225 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-----------------------s~sV~~-~~~~a~~~Ga~V~~~~~~~~~g~i 225 (603)
...+++++++++++|++ +.+++... +.+... +...++..|++++.++.+
T Consensus 133 ~~~~~l~~~la~~~g~~-~~i~~~sGt~al~~~l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~------ 205 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD-RAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT------ 205 (464)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT------
T ss_pred HHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC------
Confidence 35678999999999975 33333211 111111 112234567777777653
Q ss_pred CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454 226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF 304 (603)
Q Consensus 226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~ 304 (603)
+.++|++.|. +++++|.+...+|.||.++|++.+ ++|+++|++|++|.++..|....+++ +++|+++.|+
T Consensus 206 d~~~l~~~i~------~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~---~~~div~~S~ 276 (464)
T 1ibj_A 206 KLDEVAAAIG------PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE---LGADIVMHSA 276 (464)
T ss_dssp SHHHHHHHCC------SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG---TTCSEEEEET
T ss_pred CHHHHHHHhc------cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---cCCEEEEECC
Confidence 6788988885 369999999999999999999966 58999999999999998776212443 5799999999
Q ss_pred cccCCCCCCce--EEEEEeC-CCCc
Q 007454 305 YQIFGENPSGF--GCLFVKK-STVP 326 (603)
Q Consensus 305 hK~fG~~P~G~--G~L~vkk-~~~~ 326 (603)
||+||+ |.|+ |++++++ .+.+
T Consensus 277 sK~~~g-~~Gl~~G~l~~~~~~l~~ 300 (464)
T 1ibj_A 277 TKFIAG-HSDVMAGVLAVKGEKLAK 300 (464)
T ss_dssp TTTTTC-SSCCCCEEEEECSHHHHH
T ss_pred cccccC-CCCCcEEEEEEChHHHHH
Confidence 998875 7887 9999986 4433
No 146
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.63 E-value=1.3e-14 Score=152.72 Aligned_cols=272 Identities=11% Similarity=0.065 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHc----CCC--CC-cEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccCC
Q 007454 171 LESAMKKRIMDFL----NIS--EN-DYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSWP 221 (603)
Q Consensus 171 ~~~~aR~~Ia~~l----na~--~~-e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~ 221 (603)
...+.|++|++++ |++ ++ +++++... ++ .......++..|+++..++++ .
T Consensus 64 ~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~ 142 (376)
T 2dou_A 64 CTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLR-E 142 (376)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBC-T
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCC-C
Confidence 3567888999988 875 45 78775431 12 222334456678888888873 2
Q ss_pred ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCC----CCCCCCC-
Q 007454 222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPK----DMDSFGL- 292 (603)
Q Consensus 222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~----~m~~ldl- 292 (603)
+..++.++|++.|.. +++++.++..+|.||.++|.+. +++|+++|+++++|.++.... ....+++
T Consensus 143 ~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 216 (376)
T 2dou_A 143 DGLADLKAVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALP 216 (376)
T ss_dssp TSSBCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGST
T ss_pred CCCCCHHHHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcC
Confidence 345788899888863 5889999888999999999642 246899999999999876531 0011222
Q ss_pred CCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454 293 SLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 370 (603)
Q Consensus 293 s~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e 370 (603)
...+.++++.|++|+|| +.| +|+++.++++++.+.... . ..
T Consensus 217 ~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~------------~-----------------------~~ 259 (376)
T 2dou_A 217 GAKERVVELFSLSKSYN--LAGFRLGFALGSEEALARLERVK------------G-----------------------VI 259 (376)
T ss_dssp TGGGTEEEEEEHHHHHT--CGGGCCEEEEECHHHHHHHHHHH------------H-----------------------HH
T ss_pred CCCCcEEEEecchhhcC--ChhheeEEEecCHHHHHHHHHHH------------H-----------------------hc
Confidence 22356899999999998 447 699988776544332100 0 01
Q ss_pred cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454 371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~ 450 (603)
..+.|..+..++. ++++... -.++.+.++.+.++++|.+
T Consensus 260 ~~~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~ 298 (376)
T 2dou_A 260 DFNQYAGVLRMGV----------------------------------------EALKTPK-EVVRGYARVYRERALGMAE 298 (376)
T ss_dssp CCCSCHHHHHHHH----------------------------------------HHHTSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHH----------------------------------------HHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 1223433333222 2333211 1356677788888999999
Q ss_pred HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454 451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 529 (603)
Q Consensus 451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~ 529 (603)
.|.++ ++++.|. .+..+.+.+++. ++.. ++++|.+ +||.++.|..|...
T Consensus 299 ~L~~~----------~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~l~~-~gi~v~~g~~f~~~----------- 348 (376)
T 2dou_A 299 ALKGV----------LSLLPPR----ATMYLWGRLPEG----VDDLEFGLRLVE-RGVALAPGRGFGPG----------- 348 (376)
T ss_dssp HHTTT----------SEECCCC----BSSEEEEECCTT----CCHHHHHHHHHH-TTEECEEGGGGCGG-----------
T ss_pred HHHHh----------cCccCCC----eeEEEEEECCCC----CCHHHHHHHHHH-CCEEEcCchhhCCC-----------
Confidence 98753 3444432 344566777531 2233 4555555 49999988766310
Q ss_pred HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
..+.||+|++. +.+||+++++.|+++++
T Consensus 349 -----------------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l~ 376 (376)
T 2dou_A 349 -----------------------GKGFVRIALVR--PLEELLEAAKRIREALD 376 (376)
T ss_dssp -----------------------GTTEEEEECCS--CHHHHHHHHHHHHHTC-
T ss_pred -----------------------CCCeEEEEecC--CHHHHHHHHHHHHHHhC
Confidence 12589999986 89999999999988753
No 147
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.63 E-value=5.6e-15 Score=158.51 Aligned_cols=283 Identities=15% Similarity=0.147 Sum_probs=176.6
Q ss_pred HHHHHHHHHHcC--------CCCCcEEEeccC-chHHHHH---------------------H-HHHHcCCEEEEEeccCC
Q 007454 173 SAMKKRIMDFLN--------ISENDYVYDYES-EAVEAMI---------------------R-TSEKRGARVMSAEFSWP 221 (603)
Q Consensus 173 ~~aR~~Ia~~ln--------a~~~e~vf~~es-~sV~~~~---------------------~-~a~~~Ga~V~~~~~~~~ 221 (603)
.+.|+.|+++++ +++++++++..+ +++..++ . .++..|+++..++.+..
T Consensus 86 ~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~ 165 (428)
T 1iay_A 86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESS 165 (428)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCc
Confidence 478888898887 778888775432 1221111 1 12246888888887532
Q ss_pred -ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCC-C-CCCCCCCC
Q 007454 222 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPK-D-MDSFGLSL 294 (603)
Q Consensus 222 -~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~-~-m~~ldls~ 294 (603)
+..++.++|++.|........++++|.++..+|.||.++| ++.+ +.|+++|+++++|.++.... + -...++..
T Consensus 166 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~ 245 (428)
T 1iay_A 166 NNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAE 245 (428)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHH
T ss_pred cCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHH
Confidence 2367999999988642111236899999999999999999 6544 57899999999999876521 0 00112211
Q ss_pred ---------CCCc--EEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcc
Q 007454 295 ---------VRPD--FLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 360 (603)
Q Consensus 295 ---------~~~D--flv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 360 (603)
+++| +++.|++|+|| ..| +|++++. +++++.+...
T Consensus 246 ~~~~~~~~~~~~d~viv~~s~sK~~g--~~Glr~G~~~~~~~~~~~~~~~~----------------------------- 294 (428)
T 1iay_A 246 ILDEQEMTYCNKDLVHIVYSLSKDMG--LPGFRVGIIYSFNDDVVNCARKM----------------------------- 294 (428)
T ss_dssp HHTSGGGTTSCTTSEEEEEESTTTSS--CGGGCEEEEEESCHHHHHHHHHH-----------------------------
T ss_pred hccccccccCCCCcEEEEecchhhcC--CCCceEEEEEeCCHHHHHHHHHH-----------------------------
Confidence 2378 89999999999 447 5999984 4443322210
Q ss_pred cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHH---HHhcCHHHH
Q 007454 361 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ---VDSLGLTMI 437 (603)
Q Consensus 361 ~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~---~~~iGl~~i 437 (603)
....+.|..+..++. .+++. +++ .++.+
T Consensus 295 --------~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~-~~~~~ 325 (428)
T 1iay_A 295 --------SSFGLVSTQTQYFLA----------------------------------------AMLSDEKFVDN-FLRES 325 (428)
T ss_dssp --------HTTSCCCHHHHHHHH----------------------------------------HHTTCHHHHHH-HHHHH
T ss_pred --------HhcccCCHHHHHHHH----------------------------------------HHhcChHHHHH-HHHHH
Confidence 000122222222211 12221 111 24567
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCC---ccCHHHHHHHHhcCCcEEeeCcc
Q 007454 438 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE---KIEPVLVQKLADRENISLSYGSL 514 (603)
Q Consensus 438 ~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~---~v~~~~V~~Lad~~gI~lr~G~~ 514 (603)
.++.+...++|.+.|.++ | ++++.+ ..+..+.+.+++.... .-...+.++|++++||.++.|..
T Consensus 326 ~~~~~~~~~~l~~~L~~~------g---~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~ 392 (428)
T 1iay_A 326 AMRLGKRHKHFTNGLEVV------G---IKCLKN----NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSS 392 (428)
T ss_dssp HHHHHHHHHHHHHHHHHT------T---CCBCCC----SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHhc------C---CcccCC----CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchh
Confidence 778888899999999875 2 333433 2456777887652110 01123456666667999998755
Q ss_pred cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
|.. ...+.+|+|++ ..|.+|++++++.|++++++
T Consensus 393 ~~~----------------------------------~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 393 FEC----------------------------------QEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp GTC----------------------------------SSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred hCC----------------------------------CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 421 11258999999 68999999999999998753
No 148
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.63 E-value=4e-15 Score=161.30 Aligned_cols=147 Identities=13% Similarity=0.102 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHcCCCCCcEEEecc-CchHHHHHHHHHH----cCCE---EEEE---------------------eccC--
Q 007454 172 ESAMKKRIMDFLNISENDYVYDYE-SEAVEAMIRTSEK----RGAR---VMSA---------------------EFSW-- 220 (603)
Q Consensus 172 ~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~~~~~~a~~----~Ga~---V~~~---------------------~~~~-- 220 (603)
..+.|++|++++|. ++++|+.. ++++...+..+.+ .|.+ |... +...
T Consensus 78 ~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 155 (467)
T 1ax4_A 78 YYDLKDKAKELFNY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAF 155 (467)
T ss_dssp HHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGG
T ss_pred HHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccc
Confidence 45778999999986 46777653 2444444444444 5554 3322 1110
Q ss_pred -------CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccHH---HH-HHHHhCCcEEEEeccccC-----
Q 007454 221 -------PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL---WM-RIAQENDWHILIDACALG----- 283 (603)
Q Consensus 221 -------~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl~---~i-~~a~e~g~~vlvDAaq~~----- 283 (603)
.++.++.++|+++|...+ .+++++|++...+|.| |.++|.+ .+ ++|+++|+++++|+++..
T Consensus 156 ~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~ 233 (467)
T 1ax4_A 156 DSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYF 233 (467)
T ss_dssp CTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred cccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchh
Confidence 034678999999997421 1258999999999999 8888864 33 478999999999998765
Q ss_pred ------CCCCCCCCCCC------CCCcEEEEcccccCCCCCCceEEEEEe-C-CCCc
Q 007454 284 ------PKDMDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVK-K-STVP 326 (603)
Q Consensus 284 ------~~~m~~ldls~------~~~Dflv~S~hK~fG~~P~G~G~L~vk-k-~~~~ 326 (603)
++ ..+++.. ..+|++++|+||+||. |.| |+++.+ + ++++
T Consensus 234 ~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~d~~~l~~ 286 (467)
T 1ax4_A 234 IKARDPKY--KNATIKEVIFDMYKYADALTMSAKKDPLL-NIG-GLVAIRDNEEIFT 286 (467)
T ss_dssp HHHHCGGG--TTCCHHHHHHHHGGGCSEEEEETTSTTCC-SSC-EEEEESSCHHHHH
T ss_pred cccccccc--CCCchhhhhhhhccccceEEEeccccCCC-Ccc-eEEEeCCHHHHHH
Confidence 34 2343322 2489999999999995 545 666666 4 4443
No 149
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.63 E-value=5.5e-15 Score=159.08 Aligned_cols=281 Identities=15% Similarity=0.146 Sum_probs=177.4
Q ss_pred HHHHHHHHHHcC--------CCCCcEEEeccC-chHHH---------------------HHHHHH-HcCCEEEEEeccCC
Q 007454 173 SAMKKRIMDFLN--------ISENDYVYDYES-EAVEA---------------------MIRTSE-KRGARVMSAEFSWP 221 (603)
Q Consensus 173 ~~aR~~Ia~~ln--------a~~~e~vf~~es-~sV~~---------------------~~~~a~-~~Ga~V~~~~~~~~ 221 (603)
.+.|++|+++++ +++++++++... +++.. ....++ ..|+++..+++++.
T Consensus 89 ~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~ 168 (435)
T 3piu_A 89 PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSS 168 (435)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCc
Confidence 478888999888 678888775321 11111 122233 46888888887632
Q ss_pred -ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC----CCCCCCCCC
Q 007454 222 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG----PKDMDSFGL 292 (603)
Q Consensus 222 -~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~----~~~m~~ldl 292 (603)
...++.++|++.|...+....++++|.+...+|.||.++|.+.+ ++|+++|+++++|.++.. ++ ....+
T Consensus 169 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~ 246 (435)
T 3piu_A 169 NGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISV 246 (435)
T ss_dssp GTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCH
T ss_pred cCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCH
Confidence 13479999999997422222368999999999999999998532 458999999999998765 32 11222
Q ss_pred CC----CCC---------cEEEEcccccCCCCCCc--eEEEEEeCC-CCcCcCCCCCCCceeccccccccccccccCCCC
Q 007454 293 SL----VRP---------DFLICSFYQIFGENPSG--FGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCE 356 (603)
Q Consensus 293 s~----~~~---------Dflv~S~hK~fG~~P~G--~G~L~vkk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~ 356 (603)
.. .++ ++++.|++|.|| ..| +|++++++. +...++..
T Consensus 247 ~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~------------------------- 299 (435)
T 3piu_A 247 MEVLKDRNCDENSEVWQRVHVVYSLSKDLG--LPGFRVGAIYSNDDMVVAAATKM------------------------- 299 (435)
T ss_dssp HHHHHC-------CGGGGEEEEEESSSSSC--CGGGCEEEEEESCHHHHHHHHHH-------------------------
T ss_pred HHhccccccccccCCCCCEEEEEeeecccC--CCceeEEEEEeCCHHHHHHHHHH-------------------------
Confidence 11 112 288999999998 336 799988543 22212100
Q ss_pred CCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHH---HHHhcC
Q 007454 357 TEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD---QVDSLG 433 (603)
Q Consensus 357 ~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald---~~~~iG 433 (603)
. ..++.+.....++. ..++ ++++ .
T Consensus 300 --------~----~~~~~~~~~~~~~~----------------------------------------~~l~~~~~~~~-~ 326 (435)
T 3piu_A 300 --------S----SFGLVSSQTQHLLS----------------------------------------AMLSDKKLTKN-Y 326 (435)
T ss_dssp --------G----GGSCCCHHHHHHHH----------------------------------------HHHHCHHHHHH-H
T ss_pred --------h----hcCCCCHHHHHHHH----------------------------------------HHhcChHHHHH-H
Confidence 0 01122222222211 1222 1111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCc---cCHHHHHHHHhcCCcEEe
Q 007454 434 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK---IEPVLVQKLADRENISLS 510 (603)
Q Consensus 434 l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~---v~~~~V~~Lad~~gI~lr 510 (603)
+....++.+...++|.+.|.++ | ++++.+ ..+.++.+.+.+..... -..+++++|++++||.++
T Consensus 327 ~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~----~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 393 (435)
T 3piu_A 327 IAENHKRLKQRQKKLVSGLQKS------G---ISCLNG----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS 393 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT------T---CEECCC----CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------C---CcccCC----CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEe
Confidence 4566778888889999999875 2 455543 23568888886532110 012456677777799999
Q ss_pred eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.|..|.. .+.+.+|+|++.. |.+||+++++.|++++++
T Consensus 394 ~g~~~~~----------------------------------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 394 PGSSCHC----------------------------------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp EGGGGTC----------------------------------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCcccCC----------------------------------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 8876642 1136899999888 999999999999998865
No 150
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.62 E-value=1e-14 Score=157.46 Aligned_cols=322 Identities=13% Similarity=0.057 Sum_probs=189.0
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-- 183 (603)
Q Consensus 107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-- 183 (603)
.+.|.|+.+-.+ +.++.+++++.+.+... ++.+....|+.. ....+.|++|++++
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~--------------------~~~~~~~~y~~~--~g~~~lr~~ia~~~~~ 126 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAAAGL--------------------ATREGYSGYGAE--QGQGALREAVASTFYG 126 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHHHGG--------------------GGSCCCCCSTTT--TCCHHHHHHHHHHHHT
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHHHhh--------------------ccccCCCCCCCC--CCcHHHHHHHHHHHHc
Confidence 457888876554 36778888876543211 000111112111 12357899999998
Q ss_pred --CCCCCcEEEeccCc-hHHHH--------------------HHHHHHcCCE----------EEEEeccCC-ccccCHHH
Q 007454 184 --NISENDYVYDYESE-AVEAM--------------------IRTSEKRGAR----------VMSAEFSWP-RLRINSEK 229 (603)
Q Consensus 184 --na~~~e~vf~~es~-sV~~~--------------------~~~a~~~Ga~----------V~~~~~~~~-~g~i~~~~ 229 (603)
++++++++|+.... ++..+ ...++..|++ +..++++.. ....+.
T Consensus 127 g~~~~~~~i~~t~G~~~al~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 204 (449)
T 3qgu_A 127 HAGRAADEIFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL-- 204 (449)
T ss_dssp TTTCCGGGEEEESCHHHHHHHHHHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG--
T ss_pred CCCCCHHHEEEccCHHHHHHHHHHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh--
Confidence 78889998875432 22222 1222333444 555554321 111111
Q ss_pred HHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEeccccC----CCCCCCCCCCC----CCC
Q 007454 230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDACALG----PKDMDSFGLSL----VRP 297 (603)
Q Consensus 230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~----~~~ 297 (603)
.. .+++++|.+...+|.||.++|.+. + ++|+++|+++++|.++.. ++ .+..+.. .+.
T Consensus 205 -----~~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~ 273 (449)
T 3qgu_A 205 -----SK----AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEV 273 (449)
T ss_dssp -----GG----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGT
T ss_pred -----hH----cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCc
Confidence 10 136789998899999999999653 2 358899999999998765 32 2333332 256
Q ss_pred cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
++++.|++|.||.+..++|+++++++.++..... .. ..+. ........+.+..
T Consensus 274 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~----~~-------~~~~----------------~~~~~~~~~~~~~ 326 (449)
T 3qgu_A 274 AIETCSFSKYAGFTGVRLGWTVVPKALKYANGEP----VH-------ADWN----------------RVMTTCFNGASNI 326 (449)
T ss_dssp EEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCB----HH-------HHHH----------------HHHHHSCCCCCHH
T ss_pred EEEEecchhhcCCccceeEEEecCHHHHhhhhhh----HH-------HHHH----------------HHhhcccCCCCHH
Confidence 7999999999983223389999988775420000 00 0000 0000111233333
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH 457 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h 457 (603)
+..+.. ++++......++.+.++.+.++++|.+.|.++
T Consensus 327 ~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 364 (449)
T 3qgu_A 327 VQAGGL----------------------------------------ACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-- 364 (449)
T ss_dssp HHHHHH----------------------------------------HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHH----------------------------------------HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence 332221 12221101125677788889999999999876
Q ss_pred CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454 458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE 537 (603)
Q Consensus 458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~ 537 (603)
| +++++| ..+..+.+.+++.+ ..+++++|++++||.++.|..|...
T Consensus 365 ----g---~~~~~~----~~~~~~~~~~~~~~----~~~~~~~l~~~~gI~v~pg~~f~~~------------------- 410 (449)
T 3qgu_A 365 ----G---FSVYGG----DDAPYIWVGFPGKP----SWDVFAEILERCNIVTTPGSGYGPA------------------- 410 (449)
T ss_dssp ----T---CCEEES----SSSSEEEEECTTSC----HHHHHHHHHHHHCEECEEGGGGCGG-------------------
T ss_pred ----C---CeeeCC----CCeeEEEEECCCCC----HHHHHHHHHHHCCEEEecchHhCCC-------------------
Confidence 2 345554 24678888876322 2345667888889999988776421
Q ss_pred cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+.+.||+|+ .++.|||+++++.|+++++.
T Consensus 411 ---------------~~~~iRis~--~~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 411 ---------------GEGFVRASA--FGSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp ---------------GTTEEEEEC--CSCHHHHHHHHHHHHHHHC-
T ss_pred ---------------CCCeEEEEe--cCCHHHHHHHHHHHHHHHHh
Confidence 126899995 45999999999999988755
No 151
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.62 E-value=6.3e-14 Score=151.57 Aligned_cols=323 Identities=13% Similarity=0.108 Sum_probs=196.8
Q ss_pred CCceeeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa------~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|.++ .++.++.+++++.+.+... . .+... + -......+.+++|+
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--------------------~-~~~~~--~-~~~~~~~~l~~~la 103 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTL--------------------D-YSPGF--Q-YGHPLSFQLAEKIT 103 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTC--------------------S-CCCSS--S-CCCHHHHHHHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhC--------------------C-Ccccc--c-cCCHHHHHHHHHHH
Confidence 4578999862 3445889999987654321 0 00000 0 11245568889999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccCC------------------------------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSWP------------------------------ 221 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~~------------------------------ 221 (603)
+++++++++++|+.. ++++...+..+.. .|.+|......+.
T Consensus 104 ~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 183 (449)
T 3a8u_X 104 DLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLP 183 (449)
T ss_dssp TTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEEC
T ss_pred HhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEec
Confidence 999888888888754 3455554444432 3455554332111
Q ss_pred --c-c-----ccC--------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecc
Q 007454 222 --R-L-----RIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDAC 280 (603)
Q Consensus 222 --~-g-----~i~--------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAa 280 (603)
. . .++ .++|++.|.... .+++++|.+...+|.||.+.| ++.+ ++|+++|+++++|.+
T Consensus 184 ~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev 261 (449)
T 3a8u_X 184 HTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEV 261 (449)
T ss_dssp CCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred CCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEecc
Confidence 0 0 024 888998886310 025788888777788999999 9866 589999999999999
Q ss_pred cc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCC
Q 007454 281 AL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS 354 (603)
Q Consensus 281 q~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~ 354 (603)
+. .+.. +..++.....+|++++| |.|| + | +|++++++++++.+.+... + .+ . .
T Consensus 262 ~~~~g~~g~~~~~~~~~~~~di~s~s--K~l~--~-G~~~~G~~~~~~~~~~~l~~~~~-~--------~~-~--~---- 320 (449)
T 3a8u_X 262 ITGFGRTGSMFGADSFGVTPDLMCIA--KQVT--N-GAIPMGAVIASTEIYQTFMNQPT-P--------EY-A--V---- 320 (449)
T ss_dssp TTTTTTTSSSSHHHHHTCCCSEEEEC--GGGG--T-TSSCCEEEEEEHHHHHHHHTCSS-C--------TT-S--C----
T ss_pred ccCccccCcchhhhhcCCCCCEEEEc--cccc--C-CCCceEEEEECHHHHHHhhccCc-c--------cc-c--c----
Confidence 84 4431 11122223458988555 9998 4 6 9999999877655543100 0 00 0 0
Q ss_pred CCCCcccCcccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc
Q 007454 355 CETEPEQTSKSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL 432 (603)
Q Consensus 355 ~~~e~~~~~~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i 432 (603)
.. ...+| .|..+.++.. ++++.+++
T Consensus 321 ----------~~--~~~~t~~~~~~~~aa~~----------------------------------------aal~~~~~- 347 (449)
T 3a8u_X 321 ----------EF--PHGYTYSAHPVACAAGL----------------------------------------AALCLLQK- 347 (449)
T ss_dssp ----------SS--CCCCTTTTCHHHHHHHH----------------------------------------HHHHHHHH-
T ss_pred ----------cc--cccCCCcccHHHHHHHH----------------------------------------HHHHHHHh-
Confidence 00 01222 2333332221 56776654
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCc-cCH-HHHHHHHhcCCcEEe
Q 007454 433 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEP-VLVQKLADRENISLS 510 (603)
Q Consensus 433 Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~-v~~-~~V~~Lad~~gI~lr 510 (603)
+.+.++++.+.+++.++|.++. +.|.+..+ ...|.++.+.+.+..... ..+ .+..+|. ++||.++
T Consensus 348 --~~~~~~~~~~~~~l~~~L~~l~-----~~~~~~~~-----~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~ 414 (449)
T 3a8u_X 348 --ENLVQSVAEVAPHFEKALHGIK-----GAKNVIDI-----RNFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGFYVR 414 (449)
T ss_dssp --TTHHHHHHHHHHHHHHHHHTTT-----TSTTEEEE-----EEETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTEECE
T ss_pred --cCHHHHHHHHHHHHHHHHHHHh-----cCCCeEEE-----eeeEEEEEEEEecCcccccccHHHHHHHHH-HCCcEEe
Confidence 2466788899999999998863 13333221 125788999887532110 012 2344454 4588876
Q ss_pred eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.| + +.||+|+++.+|.+||+++++.|++++..
T Consensus 415 ~~----------------------------------------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 415 FG----------------------------------------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp EE----------------------------------------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cC----------------------------------------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 42 1 48999999999999999999999998754
No 152
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.62 E-value=3.4e-14 Score=150.09 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=162.4
Q ss_pred HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEe
Q 007454 203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILID 278 (603)
Q Consensus 203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvD 278 (603)
...++..|+++..++++..+..++.++|++.+.. +++++.+...+|.||.++|.+. + ++|+++|+++++|
T Consensus 134 ~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 207 (396)
T 3jtx_A 134 EGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASD 207 (396)
T ss_dssp HHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3445667888888887533446788899998874 5899999899999999999875 3 3678999999999
Q ss_pred ccccCCCCC--CCCCCC--------CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceecccccccc
Q 007454 279 ACALGPKDM--DSFGLS--------LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQL 346 (603)
Q Consensus 279 Aaq~~~~~m--~~ldls--------~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~ 346 (603)
.++.....- .++.+- ..+.++++.|++|.||. .| +|+++.++++++.+...
T Consensus 208 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~G~r~G~~~~~~~~~~~~~~~--------------- 270 (396)
T 3jtx_A 208 ECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV--PGLRSGFVAGDAELLKNFLLY--------------- 270 (396)
T ss_dssp CTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSC--GGGCCEEEEECHHHHHHHHHH---------------
T ss_pred ccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCC--cccceEEEEeCHHHHHHHHHH---------------
Confidence 987652100 122211 25778999999998883 35 68777665544333210
Q ss_pred ccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHH
Q 007454 347 WLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGL 426 (603)
Q Consensus 347 ~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 426 (603)
.. ...++.|..+..++. +++
T Consensus 271 ------------------~~--~~~~~~~~~~~~a~~----------------------------------------~~l 290 (396)
T 3jtx_A 271 ------------------RT--YHGSAMSIPVQRASI----------------------------------------AAW 290 (396)
T ss_dssp ------------------HH--HHTCCCCHHHHHHHH----------------------------------------HHH
T ss_pred ------------------Hh--hcccCCCHHHHHHHH----------------------------------------HHh
Confidence 00 113344555444332 234
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCC
Q 007454 427 DQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADREN 506 (603)
Q Consensus 427 d~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~g 506 (603)
+. .-.+....++.+...+++.+.|.++. .++.| ..+..+.+.+++.+ ..+++++|++++|
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~l~~~l~~~~----------~~~~~----~~~~~~~~~~~~~~----~~~~~~~l~~~~g 350 (396)
T 3jtx_A 291 DD--EQHVIDNRRLYQEKFERVIPILQQVF----------DVKLP----DASFYIWLKVPDGD----DLAFARNLWQKAA 350 (396)
T ss_dssp HC--CHHHHHHHHHHHHHHHHHHHHHTTTS----------CCCCC----SSSSEEEEECTTSC----HHHHHHHHHHHHC
T ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHHhcC----------CccCC----CeeEEEEEECCCCC----HHHHHHHHHHHCC
Confidence 32 11356677788888889999887641 12222 23567777776522 2345666778889
Q ss_pred cEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454 507 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL 581 (603)
Q Consensus 507 I~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l 581 (603)
|.++.|..|...... .....+.||+|++. +.+||+++++.|++++
T Consensus 351 i~v~~g~~~~~~~~~----------------------------~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 351 IQVLPGRFLARDTEQ----------------------------GNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp EECEEGGGGCCCCTT----------------------------CCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred EEEeCChHhCCcccc----------------------------cCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 999999888654110 11234799999987 9999999999998875
No 153
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.62 E-value=7.2e-15 Score=155.63 Aligned_cols=269 Identities=15% Similarity=0.166 Sum_probs=168.5
Q ss_pred HHHHHHHHHHc----C--CCCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccC-Ccc
Q 007454 173 SAMKKRIMDFL----N--ISENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSW-PRL 223 (603)
Q Consensus 173 ~~aR~~Ia~~l----n--a~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~-~~g 223 (603)
.+.|+.|++++ | +++++++++... ++ .......++..|+++..++.+. .+.
T Consensus 71 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 150 (385)
T 1b5p_A 71 PELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGF 150 (385)
T ss_dssp HHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTT
T ss_pred HHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCC
Confidence 36777777776 4 456788765321 11 1123345567799999999863 134
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCC-CCCCCCCCC--C
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKD-MDSFGLSLV--R 296 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~-m~~ldls~~--~ 296 (603)
.++.++|++.|.. +++++.++..+|.||.++| ++.+ ++|+++|++|++|.++..... -...++..+ +
T Consensus 151 ~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 224 (385)
T 1b5p_A 151 VPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE 224 (385)
T ss_dssp CCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred CCCHHHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCC
Confidence 6899999888753 5899999999999999999 4433 578999999999998654210 001122222 5
Q ss_pred CcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC-
Q 007454 297 PDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT- 373 (603)
Q Consensus 297 ~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT- 373 (603)
.++++.|++|+|| +.| +|++++++++++.+.+.. ..++
T Consensus 225 ~~i~~~s~SK~~~--~~G~RiG~~~~~~~~~~~l~~~~-------------------------------------~~~~~ 265 (385)
T 1b5p_A 225 HTLTVNGAAKAFA--MTGWRIGYACGPKEVIKAMASVS-------------------------------------RQSTT 265 (385)
T ss_dssp TEEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHH-------------------------------------HTTTC
T ss_pred CEEEEEechhhcC--CcccceEEEEeCHHHHHHHHHHH-------------------------------------hhccC
Confidence 6899999999999 558 899998765543332100 0111
Q ss_pred -CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHH---HHhcCHHHHHHHHHHHHHHHH
Q 007454 374 -NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ---VDSLGLTMISRRGRCLINWLV 449 (603)
Q Consensus 374 -~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~---~~~iGl~~i~~r~~~L~~~L~ 449 (603)
.+.....++. ++++. ... .++++.++.+..++++.
T Consensus 266 ~~~~~~~~a~~----------------------------------------~~l~~~~~~~~-~~~~~~~~~~~~~~~l~ 304 (385)
T 1b5p_A 266 SPDTIAQWATL----------------------------------------EALTNQEASRA-FVEMAREAYRRRRDLLL 304 (385)
T ss_dssp SCCHHHHHHHH----------------------------------------HHHHCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH----------------------------------------HHHhCCCcchH-HHHHHHHHHHHHHHHHH
Confidence 1211111111 23321 111 25667778888888999
Q ss_pred HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhH
Q 007454 450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKD 528 (603)
Q Consensus 450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~ 528 (603)
+.|.++ | +++++|. -+..+-..+... | ++.. ++++|+ ++||.++.|..|..
T Consensus 305 ~~L~~~------g---~~~~~~~----~~~~~~~~~~~~-~--~~~~~l~~~l~-~~gv~v~~g~~f~~----------- 356 (385)
T 1b5p_A 305 EGLTAL------G---LKAVRPS----GAFYVLMDTSPI-A--PDEVRAAERLL-EAGVAVVPGTDFAA----------- 356 (385)
T ss_dssp HHHHHH------T---CCBCCCS----BTTEEEEECTTT-C--SSHHHHHHHHH-HTTEECEESGGGTC-----------
T ss_pred HHHHHC------C---CeecCCC----eeEEEEEecCCC-C--CCHHHHHHHHH-HCCeEEecccccCC-----------
Confidence 999875 1 3344442 233344455321 1 2333 445555 88999998866521
Q ss_pred HHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 529 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+.||+|++ ++.+++++.++.|+++++
T Consensus 357 -------------------------~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 357 -------------------------FGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp -------------------------TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred -------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 258999998 899999999988877653
No 154
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.62 E-value=4.2e-14 Score=149.98 Aligned_cols=307 Identities=12% Similarity=0.088 Sum_probs=189.2
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|.++. ++.++.+++++.+.+... .+.++. + .....++.+++|+
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la 92 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL--------------------IHCSNL--F---WNRPQMELAELLS 92 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------SCCCTT--S---EEHHHHHHHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhc--------------------ccCccc--c---CCHHHHHHHHHHH
Confidence 45789999765 335788888876543210 111111 1 2355678999999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH------c-CCEEEEEeccCCc---------c-c------------------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK------R-GARVMSAEFSWPR---------L-R------------------ 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~------~-Ga~V~~~~~~~~~---------g-~------------------ 224 (603)
+++| +++++|... ++++..++..+.. . +.+|...+..+.. + .
T Consensus 93 ~~~g--~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~ 170 (397)
T 2ord_A 93 KNTF--GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF 170 (397)
T ss_dssp HTTT--SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT
T ss_pred HhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC
Confidence 9998 467777653 3455555555442 3 3466655432210 1 0
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccc-ccc---HHHH-HHHHhCCcEEEEeccccC-CCCCCCCCCCCC--C
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYP---YLWM-RIAQENDWHILIDACALG-PKDMDSFGLSLV--R 296 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~-~~p---l~~i-~~a~e~g~~vlvDAaq~~-~~~m~~ldls~~--~ 296 (603)
.+.++|++.|. +++++|.+...+|.||. .+| ++.+ ++|+++|+++++|.++.. +..=..+.+..+ .
T Consensus 171 ~d~~~l~~~l~------~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 244 (397)
T 2ord_A 171 NNVEDLRRKMS------EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVV 244 (397)
T ss_dssp TCHHHHHHHCC------TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred CCHHHHHHHhh------cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCC
Confidence 26778887775 26899999999999999 554 4434 478999999999999862 211002222222 3
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454 297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF 376 (603)
Q Consensus 297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~ 376 (603)
+|++ |++|+||. +.++|+++++++.+ .+.+...++ .-+.|.
T Consensus 245 ~d~~--s~sK~~~~-G~r~G~~~~~~~~~-~l~~~~~~~-----------------------------------~~~~~~ 285 (397)
T 2ord_A 245 PDVL--TTAKGLGG-GVPIGAVIVNERAN-VLEPGDHGT-----------------------------------TFGGNP 285 (397)
T ss_dssp CSEE--EECGGGGT-TSCCEEEEECSTTC-CCCTTSSCC-----------------------------------SSTTCH
T ss_pred CCee--eeccccCC-CcCeEEEEEchHhc-ccCCCCcCC-----------------------------------CCCCCH
Confidence 8977 55799983 45699999998865 454211000 001233
Q ss_pred hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454 377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ 456 (603)
Q Consensus 377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~ 456 (603)
.+.+++. ++++.++. +.+.++.+.+.++|.+.|.++.
T Consensus 286 ~~~~a~~----------------------------------------~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~ 322 (397)
T 2ord_A 286 LACRAGV----------------------------------------TVIKELTK---EGFLEEVEEKGNYLMKKLQEMK 322 (397)
T ss_dssp HHHHHHH----------------------------------------HHHHHHTS---TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------------------HHHHHHHh---CCHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 46665443 4567788888999999987752
Q ss_pred CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454 457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 535 (603)
Q Consensus 457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~ 535 (603)
. +.+.+.... ..+.++.|.+.+. .... ++++|. ++||.++.|
T Consensus 323 ~----~~~~~~~~~-----~~g~~~~~~~~~~----~~~~~l~~~l~-~~gi~v~~~----------------------- 365 (397)
T 2ord_A 323 E----EYDVVADVR-----GMGLMIGIQFREE----VSNREVATKCF-ENKLLVVPA----------------------- 365 (397)
T ss_dssp H----HCTTEEEEE-----EETTEEEEEECTT----SCHHHHHHHHH-HTTEECEEE-----------------------
T ss_pred H----hCCceEEEE-----EEeEEEEEEECCh----HHHHHHHHHHH-HCCCEEccC-----------------------
Confidence 0 122232111 2477889988652 1233 344454 489987753
Q ss_pred cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
+ .+.||+|+++.++.+|++++++.|++++.
T Consensus 366 --------------~---~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 366 --------------G---NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp --------------T---TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred --------------C---CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 0 14899999999999999999999998874
No 155
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.61 E-value=8.1e-15 Score=152.14 Aligned_cols=287 Identities=14% Similarity=0.145 Sum_probs=183.3
Q ss_pred CceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC--
Q 007454 108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN-- 184 (603)
Q Consensus 108 ~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln-- 184 (603)
+.+|||++... +.++.+++++.+.+... ..+.|+.. ...+.|+.|+++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------------------~~~~y~~~---~~~~lr~~la~~~~~~ 72 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSD------------------------ALRIYYDS---PDEELIEKILSYLDTD 72 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGG------------------------GGGSCCCS---SCHHHHHHHHHHHTCS
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhh------------------------hhhcCCCC---chHHHHHHHHHHcCCC
Confidence 57999999885 46889999987754210 00011110 14589999999999
Q ss_pred -CCCCcEEEeccC-chH-----------------HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454 185 -ISENDYVYDYES-EAV-----------------EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG 245 (603)
Q Consensus 185 -a~~~e~vf~~es-~sV-----------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~ 245 (603)
+++++++++... +++ ......++..|+++..++.+ +++.++.++| ++++
T Consensus 73 ~~~~~~v~~~~G~~~al~~~~~~~gd~Vl~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l-----------~~~~ 140 (335)
T 1uu1_A 73 FLSKNNVSVGNGADEIIYVMMLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT-KDLRIPEVNV-----------GEGD 140 (335)
T ss_dssp SCCGGGEEEESSHHHHHHHHHHHSSEEEECSSSCHHHHHHHHHHTCEEEECCCC-TTSCCCCCCC-----------CTTE
T ss_pred CCCHHHEEEcCChHHHHHHHHHHhCCcEEECCCcHHHHHHHHHcCCeEEEeccC-CCCCCCHHHc-----------CCCC
Confidence 888899876432 122 22333445567777777665 2334554444 1578
Q ss_pred EEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCC-CCCCCCC-CCCCCCcEEEEcccccCCCCCCc--eEEEEE
Q 007454 246 LFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGP-KDMDSFG-LSLVRPDFLICSFYQIFGENPSG--FGCLFV 320 (603)
Q Consensus 246 Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~-~~m~~ld-ls~~~~Dflv~S~hK~fG~~P~G--~G~L~v 320 (603)
+|.++..+|.||.++|.+.+. +++..| ++++|.++... .. ..++ +...+.++++.|++|+|| +.| +|++++
T Consensus 141 ~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~ 216 (335)
T 1uu1_A 141 VVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFS--LAAQRVGYVVA 216 (335)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTT--CGGGCCEEEEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcC--CcccCeEEEEe
Confidence 999888899999999999664 677778 89999987631 10 1133 234567899999999999 557 799999
Q ss_pred eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhh
Q 007454 321 KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRR 400 (603)
Q Consensus 321 kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~ 400 (603)
++++++.+.+.. ...+.|..+..++.
T Consensus 217 ~~~~~~~l~~~~-------------------------------------~~~~~~~~~~~~~~----------------- 242 (335)
T 1uu1_A 217 SEKFIDAYNRVR-------------------------------------LPFNVSYVSQMFAK----------------- 242 (335)
T ss_dssp CHHHHHHHHHHS-------------------------------------CTTCSCHHHHHHHH-----------------
T ss_pred CHHHHHHHHHhc-------------------------------------CCCCcCHHHHHHHH-----------------
Confidence 776544333100 01233444433322
Q ss_pred hhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCE
Q 007454 401 AEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA 480 (603)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~i 480 (603)
++++..+ .++.+.++.+.++++|.+.|.++ | ++++ | ..++.
T Consensus 243 -----------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~-~----~~~~~ 283 (335)
T 1uu1_A 243 -----------------------VALDHRE--IFEERTKFIVEERERMKSALREM------G---YRIT-D----SRGNF 283 (335)
T ss_dssp -----------------------HHHHTHH--HHHHHHHHHHHHHHHHHHHHHHH------T---CCBC-C----CCSSE
T ss_pred -----------------------HHhCCHH--HHHHHHHHHHHHHHHHHHHHHHC------C---cEEc-C----CCCeE
Confidence 3444311 35677788888999999999875 2 2333 2 23667
Q ss_pred EEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454 481 LAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA 559 (603)
Q Consensus 481 vsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~ 559 (603)
+.+.+++ .+.. +.++|. ++||.++.+ .+.+|+
T Consensus 284 ~~~~~~~-----~~~~~~~~~l~-~~gi~v~~~-----------------------------------------~~~iRi 316 (335)
T 1uu1_A 284 VFVFMEK-----EEKERLLEHLR-TKNVAVRSF-----------------------------------------REGVRI 316 (335)
T ss_dssp EEEECCT-----HHHHHHHHHHH-HHTEEEEEE-----------------------------------------TTEEEE
T ss_pred EEEECCC-----CCHHHHHHHHH-HCCEEEEEC-----------------------------------------CCeEEE
Confidence 7777754 1223 344444 579988741 148999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 007454 560 SLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 560 Slg~~tt~eDVd~l~~~l~~~ 580 (603)
|++ +.+|++++++.|+++
T Consensus 317 s~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 317 TIG---KREENDMILRELEVF 334 (335)
T ss_dssp ECC---CHHHHHHHHHHHHCC
T ss_pred EeC---CHHHHHHHHHHHHhh
Confidence 985 478999999998764
No 156
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.60 E-value=2.9e-15 Score=157.65 Aligned_cols=294 Identities=10% Similarity=0.026 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEecc-CchH----------------------HHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454 171 LESAMKKRIMDFLNISENDYVYDYE-SEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRINS 227 (603)
Q Consensus 171 ~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~ 227 (603)
...+.|++|++++|++ +.+|... ++++ ......++..|++++.+++++.++.++.
T Consensus 36 ~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~ 113 (367)
T 3nyt_A 36 EVTELEDRLADFVGAK--YCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDP 113 (367)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCG
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCH
Confidence 4668899999999985 4544311 1111 1123345667999999998865588899
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC--cEEEEcc
Q 007454 228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP--DFLICSF 304 (603)
Q Consensus 228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~--Dflv~S~ 304 (603)
++|+++|.. ++++|. .+|.||...|++.+ ++|+++|+++++|++|..|. ..+....+. |++++||
T Consensus 114 ~~l~~~i~~------~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~---~~~~~~~~~~~di~~~Sf 181 (367)
T 3nyt_A 114 QLLEAAITP------RTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGA---SYKGKRSCNLSTVACTSF 181 (367)
T ss_dssp GGTGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTC---EETTEETTSSSSEEEEEC
T ss_pred HHHHHhcCc------CCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCC---eECCeeccCCCCEEEEEC
Confidence 999888853 677777 56899999999965 58999999999999998765 233222333 9999996
Q ss_pred --cccCCCCCCceEEEEEeC--CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454 305 --YQIFGENPSGFGCLFVKK--STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM 380 (603)
Q Consensus 305 --hK~fG~~P~G~G~L~vkk--~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~ 380 (603)
||++| +.|.|.+++.+ .+.+.+++...+|... .+.. ...|...-...+
T Consensus 182 ~~~K~l~--~~g~gg~~~~~~~~l~~~~~~~~~~g~~~------~~~~--------------------~~~g~~~~~~~~ 233 (367)
T 3nyt_A 182 FPSAPLG--CYGDGGAIFTNDDELATAIRQIARHGQDR------RYHH--------------------IRVGVNSRLDTL 233 (367)
T ss_dssp CTTSSSC--CSSCCEEEEESCHHHHHHHHHHTBTTEEE------TTEE--------------------CSCCCBCCCCHH
T ss_pred CCCCcCC--CcCceeEEEeCCHHHHHHHHHHHhcCCCc------Ccee--------------------eccCcCCCccHH
Confidence 89999 65655555543 2333333222223210 0000 011211111111
Q ss_pred hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454 381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT 460 (603)
Q Consensus 381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~ 460 (603)
..+ .++..++ .++.+.++.+.+.+++.+.|.++.
T Consensus 234 ~aa----------------------------------------~~~~~l~--~~~~~~~~~~~~~~~~~~~L~~~~---- 267 (367)
T 3nyt_A 234 QAA----------------------------------------ILLPKLE--IFEEEIALRQKVAAEYDLSLKQVG---- 267 (367)
T ss_dssp HHH----------------------------------------HHHHHHH--THHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHH----------------------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHhccCC----
Confidence 110 1222222 356777888899999999998762
Q ss_pred CCCceEEEeCCCCC-CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454 461 EGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK 539 (603)
Q Consensus 461 ~g~plv~Iygp~~~-~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~ 539 (603)
+++...... .....++.+.+. +.+.+.+.+.++||.++.++.+.......+.. ....|..
T Consensus 268 -----~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~-------~~~~~~~ 328 (367)
T 3nyt_A 268 -----IGTPFIEVNNISVYAQYTVRMD-------NRESVQASLKAAGVPTAVHYPIPLNKQPAVAD-------EKAKLPV 328 (367)
T ss_dssp -----CCCCCCCTTEECCCSSEEEECS-------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCC-------TTCCCHH
T ss_pred -----eeccCCCCCCceeeEEEEEEeC-------CHHHHHHHHHHCCCceeccCCCccccChhhhc-------cCCCChH
Confidence 111111100 011223444443 23445566667899999875422111111100 0000000
Q ss_pred cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
. .......||++++..+|.+||+++++.|+++
T Consensus 329 ---~------~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 329 ---G------DKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ---H------HHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ---H------HHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 0 0112358999999999999999999998764
No 157
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.60 E-value=1.4e-14 Score=155.49 Aligned_cols=279 Identities=11% Similarity=0.081 Sum_probs=180.7
Q ss_pred HHHHHHHHHHc-----CCCCCc---EEEeccC-ch---------------------HHHHHHHHHH-cCCEEEEEeccCC
Q 007454 173 SAMKKRIMDFL-----NISEND---YVYDYES-EA---------------------VEAMIRTSEK-RGARVMSAEFSWP 221 (603)
Q Consensus 173 ~~aR~~Ia~~l-----na~~~e---~vf~~es-~s---------------------V~~~~~~a~~-~Ga~V~~~~~~~~ 221 (603)
.+.|+.|++++ ++++++ ++++... ++ .......++. .|+++..+++++.
T Consensus 91 ~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~ 170 (430)
T 2x5f_A 91 EELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK 170 (430)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT
T ss_pred HHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc
Confidence 47899999999 898888 7765321 11 1222344556 7999999988753
Q ss_pred ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHh-----CCcEEEEeccccCC----CCCC
Q 007454 222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQE-----NDWHILIDACALGP----KDMD 288 (603)
Q Consensus 222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e-----~g~~vlvDAaq~~~----~~m~ 288 (603)
++.++.++|++.|... +.++++++++..+|.||.++| ++.+ ++|++ +|+++++|.++... +...
T Consensus 171 ~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~ 247 (430)
T 2x5f_A 171 DGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQ 247 (430)
T ss_dssp TSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCS
T ss_pred cCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccch
Confidence 4578999999999742 126899999999999999999 5433 57889 99999999987642 1001
Q ss_pred CC--CCCC-CCC---cEEEEcccccCCCCCCc--eEEEEE---eCCCCcCcCCCCCCCceeccccccccccccccCCCCC
Q 007454 289 SF--GLSL-VRP---DFLICSFYQIFGENPSG--FGCLFV---KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 357 (603)
Q Consensus 289 ~l--dls~-~~~---Dflv~S~hK~fG~~P~G--~G~L~v---kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~ 357 (603)
++ ++.. .+. ++++.|++|+|| +.| +|++++ ++++++.+.... ...
T Consensus 248 ~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~riG~~~~~~~~~~~~~~l~~~~------------~~~---------- 303 (430)
T 2x5f_A 248 SLFTALTNLHSNAILPIRLDGATKEFF--AWGFRVGFMTFGTSDQTTKEVLEAKV------------KGL---------- 303 (430)
T ss_dssp CHHHHHHTTCCTTEEEEEEEEHHHHTT--CGGGCCEEEEEBCCCHHHHHHHHHHH------------HHH----------
T ss_pred HHHHHHhhccCCcceEEEEEecccCCC--CCCCCeEEEEEecCCHHHHHHHHHHH------------hhh----------
Confidence 22 3322 334 688999999998 447 699999 665543332100 000
Q ss_pred CcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHH----HHHhcC
Q 007454 358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD----QVDSLG 433 (603)
Q Consensus 358 e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald----~~~~iG 433 (603)
.+ ....++|..+..++. ++++ +.+.
T Consensus 304 -------~~--~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~-- 332 (430)
T 2x5f_A 304 -------IR--SNISSGPLPTQSAVK----------------------------------------HVLKNNKQFDKE-- 332 (430)
T ss_dssp -------HH--TTTSSCCHHHHHHHH----------------------------------------HHHHSCHHHHHH--
T ss_pred -------hh--cccCCCChHHHHHHH----------------------------------------HHHccChHHHHH--
Confidence 00 012334444443332 3444 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc
Q 007454 434 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS 513 (603)
Q Consensus 434 l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~ 513 (603)
++++.++.+...++|.+.|.+..... | ++++.|. .+-.+.+.+++.+ ...+.++|.+++||.++.|
T Consensus 333 ~~~~~~~~~~~~~~l~~~L~~~~~~~--g---~~~~~~~----~g~~~~~~~~~~~----~~~~~~~l~~~~gi~v~~g- 398 (430)
T 2x5f_A 333 IEQNIQTLKERYEVTKEVVYADQYHS--H---WQAYDFN----SGYFMAIKVHDVD----PEALRKHLIDKYSIGVIAL- 398 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGTT--T---EEECCCC----BSSEEEEEESSSC----HHHHHHHHHHHHCEECEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCC--C---ceeeCCC----ceEEEEeCCCCCC----HHHHHHHHHHhCCEEEecC-
Confidence 45578888889999999997321000 2 6666542 2345777886322 1234555665589998765
Q ss_pred ccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 514 LHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 514 ~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.+|+|+++ ++.+||+++++.|+++++.
T Consensus 399 ---------------------------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 399 ---------------------------------------NATDIRIAFSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp ---------------------------------------SSSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred ---------------------------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 01589999996 5999999999999998754
No 158
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.60 E-value=8.7e-14 Score=147.48 Aligned_cols=309 Identities=12% Similarity=0.108 Sum_probs=188.8
Q ss_pred CCceeeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~t------l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||+++.. ..++.+++++.+.+... + +.. +. ......++.+++++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--------~---------~~~---~~-----~~~~~~~~l~~~la 88 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKL--------L---------HTS---NL-----YYNENIAAAAKNLA 88 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTC--------S---------CCC---TT-----SBCHHHHHHHHHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhc--------c---------ccc---cc-----cCCHHHHHHHHHHH
Confidence 457899998762 24788888877643211 0 000 00 01345678889999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH-------cCCEEEEEeccCC------------------------ccc----
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK-------RGARVMSAEFSWP------------------------RLR---- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~Ga~V~~~~~~~~------------------------~g~---- 224 (603)
+++| +++++|... ++++...+..+.. .|.+|...+..+. +..
T Consensus 89 ~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (395)
T 3nx3_A 89 KASA--LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY 166 (395)
T ss_dssp HHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT
T ss_pred HhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC
Confidence 9998 567777654 3455554444432 2456665432221 000
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCC
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVR 296 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~ 296 (603)
.+.++|+++|. +++++|.+...+|.+|.+.| ++.+ ++|+++|+++++|.++. .+.. +..++.....
T Consensus 167 ~d~~~l~~~l~------~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~ 240 (395)
T 3nx3_A 167 NDISSVEKLVN------EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQIL 240 (395)
T ss_dssp TCHHHHHTTCC------TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred CCHHHHHHhcc------CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCC
Confidence 16778887775 36888888889999999988 8765 48999999999999876 3321 1122333456
Q ss_pred CcEEEEcccccCCCCCCceEEEEEeCCC-CcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454 297 PDFLICSFYQIFGENPSGFGCLFVKKST-VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 375 (603)
Q Consensus 297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~-~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n 375 (603)
+|++++| |.||. +.++|++++++++ .+.+.+...+++ | +.|
T Consensus 241 ~d~~t~s--K~~~~-G~~~G~~~~~~~~~~~~~~~~~~~~~----------~-------------------------~~~ 282 (395)
T 3nx3_A 241 PDIMTSA--KALGC-GLSVGAFVINQKVASNSLEAGDHGST----------Y-------------------------GGN 282 (395)
T ss_dssp CSEEEEC--GGGTT-TSCCEEEEECHHHHHHHSCTTCCSSC----------B-------------------------SCC
T ss_pred CCEEEec--ccccC-CCceEEEEEchhhhhhhcCCcccCCC----------C-------------------------CCC
Confidence 8998877 87774 5579999999887 555654322211 0 012
Q ss_pred hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454 376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL 455 (603)
Q Consensus 376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L 455 (603)
..+.++.. ++++.+.. +...++.+.+.+++.+.|.++
T Consensus 283 ~~~~~aa~----------------------------------------aal~~~~~---~~~~~~~~~~~~~~~~~l~~~ 319 (395)
T 3nx3_A 283 PLVCAGVN----------------------------------------AVFEIFKE---EKILENVNKLTPYLEQSLDEL 319 (395)
T ss_dssp HHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------------------HHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 45655433 234455566666666666543
Q ss_pred CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454 456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 535 (603)
Q Consensus 456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~ 535 (603)
.. ..|.+... ...+.++.|.+.+.. ....+.+.+.++||.++.|.
T Consensus 320 ~~----~~~~~~~~-----~~~g~~~~~~~~~~~----~~~~~~~~l~~~Gi~v~~~~---------------------- 364 (395)
T 3nx3_A 320 IN----EFDFCKKR-----KGLGFMQGLSLDKSV----KVAKVIQKCQENALLLISCG---------------------- 364 (395)
T ss_dssp HH----HCTTEEEE-----EEETTEEEEEECTTS----CHHHHHHHHHHTTEECEEET----------------------
T ss_pred HH----hCCCeEEE-----EeEEEEEEEEeCCcc----hHHHHHHHHHHCCCEEecCC----------------------
Confidence 10 01223221 124678888887631 23344444556798877430
Q ss_pred cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+.||+|+++..|.||++++++.|++++.
T Consensus 365 ------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 365 ------------------ENDLRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp ------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 25899999999999999999999999875
No 159
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.60 E-value=7.5e-14 Score=149.85 Aligned_cols=308 Identities=13% Similarity=0.084 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeccC-chH--------------------HHHHHHHHHcCCEEEEEeccCCccccCHH
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYES-EAV--------------------EAMIRTSEKRGARVMSAEFSWPRLRINSE 228 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV--------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~ 228 (603)
..+.+.|++|++++|++ +++++... +++ ......++..|++++.+++++.++.++.+
T Consensus 52 ~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~ 129 (424)
T 2po3_A 52 PLVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPD 129 (424)
T ss_dssp HHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHH
T ss_pred HHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHH
Confidence 45678999999999873 66554221 111 11223455679999999987546788999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc--
Q 007454 229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY-- 305 (603)
Q Consensus 229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h-- 305 (603)
+|++.|.. ++++|.+. |.||...+++.+ ++|+++|+++++|+++..+.....-.+..+ +|++++|++
T Consensus 130 ~l~~~i~~------~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~di~~~S~sk~ 199 (424)
T 2po3_A 130 QVAAAVTP------RTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GDAEVFSFHAT 199 (424)
T ss_dssp HHGGGCCT------TEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTT
T ss_pred HHHHhhCc------CCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccc-cCEEEEeCCCC
Confidence 99888753 57888874 589999999855 589999999999999886541000112222 699999998
Q ss_pred ccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC-Chhhhhhhh
Q 007454 306 QIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN-TFSGPMSIE 383 (603)
Q Consensus 306 K~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~-n~~gi~gl~ 383 (603)
|+++ |...|+++.+ +++++.+.+....|... . +. . . ..|+. .+..+.+ +
T Consensus 200 K~l~--~~~~G~~v~~~~~l~~~l~~~~~~~~~~------~-~~--------~-------~----~~g~~~~~~~~~a-a 250 (424)
T 2po3_A 200 KAVN--AFEGGAVVTDDADLAARIRALHNFGFDL------P-GG--------S-------P----AGGTNAKMSEAAA-A 250 (424)
T ss_dssp SSSC--CSSCEEEEESCHHHHHHHHHHHBTTTTC------T-TC--------C-------T----TCCCBCCCCHHHH-H
T ss_pred CCcc--CCCCeEEEeCCHHHHHHHHHHHhcCccc------c-cc--------c-------c----ccCcCCCcCHHHH-H
Confidence 7887 5356777776 45544444321111100 0 00 0 0 01111 1111111 0
Q ss_pred hhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 007454 384 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN 463 (603)
Q Consensus 384 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~ 463 (603)
.++..++ +++.+.++.+.+.++|.+.|.+++
T Consensus 251 ----------------------------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~------- 281 (424)
T 2po3_A 251 ----------------------------------------MGLTSLD--AFPEVIDRNRRNHAAYREHLADLP------- 281 (424)
T ss_dssp ----------------------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHTCSCT-------
T ss_pred ----------------------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHhccCC-------
Confidence 2222222 366778888899999999987652
Q ss_pred ceEEEeC-CCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccc
Q 007454 464 ALVKIYG-PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS 542 (603)
Q Consensus 464 plv~Iyg-p~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~ 542 (603)
.+++++ |........++.|.+++... -++...+.+.+.++||.++. .|.+...... .+...+ .. .
T Consensus 282 -g~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~L~~~gI~v~~--~~~~~~~~~~------~~~~~g---~~-~ 347 (424)
T 2po3_A 282 -GVLVADHDRHGLNNHQYVIVEIDEATT-GIHRDLVMEVLKAEGVHTRA--YFSPGCHELE------PYRGQP---HA-P 347 (424)
T ss_dssp -TEEECCGGGGSCCCCCCEEEEECHHHH-SSCHHHHHHHHHHTTEECBC--TTCSCGGGST------TTTTSC---CC-C
T ss_pred -CccccCCCCCCccccEEEEEEECCccc-hhhHHHHHHHHHHCCCceec--ccCCccccch------hhhhcC---CC-C
Confidence 277776 32111113677788863100 02344566666778999987 3432111000 000000 00 0
Q ss_pred ccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 543 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 543 ~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
..+. .......||++++.++|.+||+++++.|+++++..
T Consensus 348 ~~~~---~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 348 LPHT---ERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp CHHH---HHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ChhH---HHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 0000 00011368999999999999999999999988653
No 160
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.59 E-value=8.6e-14 Score=151.32 Aligned_cols=284 Identities=14% Similarity=0.153 Sum_probs=179.8
Q ss_pred HHHHHHHHHHc----CC-CCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccCCcccc
Q 007454 173 SAMKKRIMDFL----NI-SENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSWPRLRI 225 (603)
Q Consensus 173 ~~aR~~Ia~~l----na-~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i 225 (603)
.+.|+.|++++ |+ ++++++++..+ ++ .......++..|+++..++.+. ++ +
T Consensus 121 ~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~g-~ 198 (448)
T 3aow_A 121 TPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-EG-M 198 (448)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-TE-E
T ss_pred HHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-CC-C
Confidence 47888888888 98 67888776432 12 2223344566788998888874 44 8
Q ss_pred CHHHHHHHHhhcCCCCCCeeEE-EEeCccccccccccHH----HHHHHHhCCcEEEEeccccCC----CCCCCC-CCCCC
Q 007454 226 NSEKLRKMVVSKGKKKKQRGLF-VFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGP----KDMDSF-GLSLV 295 (603)
Q Consensus 226 ~~~~L~~~l~~~~~~~~~t~Lv-~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~~----~~m~~l-dls~~ 295 (603)
+.++|++.|.......++++++ ++|..+|.||.++|.+ ++++|+++|+++++|.++... ....++ ++...
T Consensus 199 d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~ 278 (448)
T 3aow_A 199 KVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNE 278 (448)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTT
T ss_pred CHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCC
Confidence 9999999986100001257876 7899999999999975 335789999999999987653 200011 22233
Q ss_pred CCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454 296 RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 373 (603)
Q Consensus 296 ~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT 373 (603)
+.++++.|+.|+|| | | +|++++++++++.+.... + . . ..+
T Consensus 279 ~~vi~~~S~SK~~~--~-GlriG~v~~~~~l~~~l~~~~------------~-------------------~---~-~~~ 320 (448)
T 3aow_A 279 GRVIYLGTFSKILA--P-GFRIGWMVGDPGIIRKMEIAK------------Q-------------------S---T-DLC 320 (448)
T ss_dssp SCEEEEEESTTTTC--G-GGCCEEEEECHHHHHHHHHHH------------H-------------------H---H-HSS
T ss_pred CCEEEEccchhhcc--c-cccEEEEEeCHHHHHHHHHHH------------H-------------------H---h-cCC
Confidence 56899999999999 4 7 799999876654333100 0 0 0 111
Q ss_pred CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHH
Q 007454 374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD-SLGLTMISRRGRCLINWLVNAL 452 (603)
Q Consensus 374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~-~iGl~~i~~r~~~L~~~L~~~L 452 (603)
.|.....++. ++|+... .-.+..+.++.+..+++|.+.|
T Consensus 321 ~~~~~q~a~~----------------------------------------~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L 360 (448)
T 3aow_A 321 TNVFGQVVAW----------------------------------------RYVDGGYLEKHIPEIRKFYKPRRDAMLEAL 360 (448)
T ss_dssp CCHHHHHHHH----------------------------------------HHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH----------------------------------------HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2322222211 2232100 0024566777778888999999
Q ss_pred hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454 453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 531 (603)
Q Consensus 453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l 531 (603)
.+.- |. .++++.|. .+..+.+.+++. ++.. ++++|.+ +||.++.|..|...
T Consensus 361 ~~~~-~~-----g~~~~~p~----~g~~~~v~~~~~----~~~~~l~~~l~~-~gV~v~pg~~f~~~------------- 412 (448)
T 3aow_A 361 EEFM-PE-----GVKWTKPE----GGMFIWVTLPDG----IDSKKMLERAIK-KGVAYVPGEAFYAH------------- 412 (448)
T ss_dssp HHHC-CT-----TCEECCCS----BSSEEEEECSTT----CCHHHHHHHHHH-TTEECEEGGGGSTT-------------
T ss_pred HHhC-CC-----CeEEeCCC----ccEEEEEEcCCC----CCHHHHHHHHHH-CCcEEEcchhhcCC-------------
Confidence 7631 10 25555542 366777777641 2333 4555554 59999988766431
Q ss_pred HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
....+.+|+|++.. +.|||+++++.|++++.+.
T Consensus 413 -------------------~~~~~~iRls~~~~-~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 413 -------------------RDVKNTMRLNFTYV-DEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp -------------------CCCCSEEEEECSSS-CTHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCCEEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 01236899999984 8999999999999988654
No 161
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.59 E-value=2.3e-14 Score=152.50 Aligned_cols=284 Identities=13% Similarity=0.121 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHc------CCCCCcEEEeccC-chHHHHHHHHHHcCC-----EEEEE-eccCC-----------------
Q 007454 172 ESAMKKRIMDFL------NISENDYVYDYES-EAVEAMIRTSEKRGA-----RVMSA-EFSWP----------------- 221 (603)
Q Consensus 172 ~~~aR~~Ia~~l------na~~~e~vf~~es-~sV~~~~~~a~~~Ga-----~V~~~-~~~~~----------------- 221 (603)
+.+.|+.|++++ ++++++++++... +++..++..+.+.|. +|... ...|+
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~ 156 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARP 156 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccC
Confidence 457899999998 6888999988654 355555555555553 55432 11110
Q ss_pred ----------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCC-
Q 007454 222 ----------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKD- 286 (603)
Q Consensus 222 ----------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~- 286 (603)
+..++.++|+ + ++++++++++..+|.||.++| ++.+ ++|+++|+++++|.++..+..
T Consensus 157 ~~~~~~~~~~~~~~d~~~l~--~------~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~ 228 (417)
T 3g7q_A 157 NIELLPEGQFKYHVDFEHLH--I------GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPG 228 (417)
T ss_dssp EEEEEGGGEEEEECCGGGCC--C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTC
T ss_pred cccccCCcccccccCHHHhc--c------ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccc
Confidence 1124555554 2 246899999999999999999 4433 468999999999998764220
Q ss_pred --CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcc
Q 007454 287 --MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK 364 (603)
Q Consensus 287 --m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 364 (603)
...+.....+.++++.|++|+ +.+..++|+++.++++++.+.... .
T Consensus 229 ~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~------------~------------------- 276 (417)
T 3g7q_A 229 IIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTITAIANMN------------G------------------- 276 (417)
T ss_dssp CBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHHHHHHHH------------H-------------------
T ss_pred ccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHHHHHHhh------------c-------------------
Confidence 011222234678999999994 632233888777655543332100 0
Q ss_pred cccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH-----HHHH
Q 007454 365 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT-----MISR 439 (603)
Q Consensus 365 ~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~-----~i~~ 439 (603)
.-..+.+..+..+ +...++...+. .+.+
T Consensus 277 ----~~~~~~~~~~~~~-------------------------------------------~~~~l~~~~~~~~~~~~~~~ 309 (417)
T 3g7q_A 277 ----IISLAPGGMGPAM-------------------------------------------MCEMIKRNDLLRLSETVIKP 309 (417)
T ss_dssp ----HHCCCCCSHHHHH-------------------------------------------HHHHHHTTCHHHHHHHTHHH
T ss_pred ----ceeeCCCcHHHHH-------------------------------------------HHHHHcCcchHHHHHHHHHH
Confidence 0011112222111 12222222221 1444
Q ss_pred HHHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454 440 RGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW 518 (603)
Q Consensus 440 r~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~ 518 (603)
+.+...+.+.+.|.+ ++. . .++++.|. .+..+.+.+++.. ++...+.+.+.++||.++.|..|..+
T Consensus 310 ~~~~~~~~~~~~l~~~l~~-----~-~~~~~~~~----~g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~f~~~ 376 (417)
T 3g7q_A 310 FYYQRVQQTIAIIRRYLSE-----E-RCLIHKPE----GAIFLWLWFKDLP---ITTELLYQRLKARGVLMVPGHYFFPG 376 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCT-----T-TCEEECCC----BSSEEEEECTTCS---SCHHHHHHHHHHTTEECEEGGGGCTT
T ss_pred HHHHHHHHHHHHHHHhccc-----C-CceeeCCC----cceEEEEEcCCCC---CCHHHHHHHHHHCCEEEECchhhCCC
Confidence 556666677777765 321 1 15666653 4667777776421 34455555567889999999988654
Q ss_pred CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
..... ....+.||+|++. +.+||+++++.|++++.+.
T Consensus 377 ~~~~~---------------------------~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 377 LDKPW---------------------------PHTHQCMRMNYVP--EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp BSSCC---------------------------GGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHH
T ss_pred Ccccc---------------------------ccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 22110 0113699999996 9999999999999988754
No 162
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.59 E-value=3.3e-14 Score=149.16 Aligned_cols=268 Identities=11% Similarity=0.045 Sum_probs=167.0
Q ss_pred HHHHHHHHHc----CC--CCCcEEEeccC-chHHHH-----------------------HHHHHHcCCEEEEEeccCCcc
Q 007454 174 AMKKRIMDFL----NI--SENDYVYDYES-EAVEAM-----------------------IRTSEKRGARVMSAEFSWPRL 223 (603)
Q Consensus 174 ~aR~~Ia~~l----na--~~~e~vf~~es-~sV~~~-----------------------~~~a~~~Ga~V~~~~~~~~~g 223 (603)
+.|+.|++++ |+ ++++++++... +++..+ ...++..|+++..+++++ ..
T Consensus 63 ~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~ 141 (376)
T 3ezs_A 63 SLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTK-EN 141 (376)
T ss_dssp HHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCG-GG
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCC-CC
Confidence 5666666665 77 77888876433 222222 233445566677777653 22
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCCC-CCCCCCC-----
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPKD-MDSFGLS----- 293 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~~-m~~ldls----- 293 (603)
.++. +|++.+.. +++++.++..+|.||.++|.+.+ ++|+++|+++++|.++..... -.+..+.
T Consensus 142 ~~~~-~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 214 (376)
T 3ezs_A 142 DFTP-SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACML 214 (376)
T ss_dssp TSCC-CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHH
T ss_pred Ccch-hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHcccc
Confidence 2333 56666653 47888888899999999997633 358899999999998765210 0012211
Q ss_pred ----CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454 294 ----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK 369 (603)
Q Consensus 294 ----~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 369 (603)
..+.++++.|++|.||.+..++|+++.++++++.+.... . .
T Consensus 215 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--------------------------------~---~ 259 (376)
T 3ezs_A 215 AGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFR--------------------------------A---Y 259 (376)
T ss_dssp TTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHH--------------------------------T---T
T ss_pred ccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHH--------------------------------h---h
Confidence 457789999999999832223788887665543332100 0 0
Q ss_pred ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007454 370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV 449 (603)
Q Consensus 370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~ 449 (603)
...+.|..+..++. ++++..+ .++...++.+.+.+++.
T Consensus 260 ~~~~~~~~~~~a~~----------------------------------------~~l~~~~--~~~~~~~~~~~~~~~l~ 297 (376)
T 3ezs_A 260 LGYTSANAIQKASE----------------------------------------AAWLDDR--HAEFFRNIYANNLKLAR 297 (376)
T ss_dssp TCCCCCHHHHHHHH----------------------------------------HHHHCSH--HHHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHH----------------------------------------HHHhCcH--HHHHHHHHHHHHHHHHH
Confidence 12334444443332 2443211 25677777888888888
Q ss_pred HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454 450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 529 (603)
Q Consensus 450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~ 529 (603)
+.|.. +. .| ..+..+.+.++ + ..+++++|.+++||.++.|..|...
T Consensus 298 ~~l~~-----------~~--~~----~~~~~~~~~~~--~----~~~~~~~l~~~~gi~v~~g~~~~~~----------- 343 (376)
T 3ezs_A 298 KIFKN-----------TL--IY----PYSFYVYLPVQ--N----GENFAKTLYQNEGIITLPALYLGRN----------- 343 (376)
T ss_dssp HHSTT-----------CC--CC----SBSSEEEEECS--C----HHHHHHHHHHHHCCBCEEGGGGCST-----------
T ss_pred HHhcC-----------CC--CC----CcceEEEEECC--C----HHHHHHHHHHhCCEEEeCcHHhCCC-----------
Confidence 87751 11 11 34667777765 1 1234566666589999999877531
Q ss_pred HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
....+.||+|++. |.+||+++++.|++++++
T Consensus 344 ---------------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 344 ---------------------RIGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp ---------------------TTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred ---------------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 1123699999984 999999999999988753
No 163
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.59 E-value=1.5e-13 Score=148.65 Aligned_cols=328 Identities=11% Similarity=0.079 Sum_probs=191.6
Q ss_pred CCceeeecCC---CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc
Q 007454 107 SNHTCLDYFG---IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183 (603)
Q Consensus 107 ~~~vYLDyaa---~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l 183 (603)
.+..|||+.+ ..++++.+++++..... .| .+ .....+.|++|++++
T Consensus 40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~~~~--------~y------------~~-----------~~~~~~l~~~la~~~ 88 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAMSDKQWAGMMMGDE--------AY------------AG-----------SENFYHLERTVQELF 88 (456)
T ss_dssp GGGCSEECSCSSSCCCCCHHHHHHHTTCCC--------CS------------SS-----------CHHHHHHHHHHHHHH
T ss_pred cccceeeeccccCCccCCHHHHHHhhcchh--------hc------------cc-----------ChhHHHHHHHHHHHh
Confidence 4578999854 34678889988752100 00 10 123456788888888
Q ss_pred CCCCCcEEEecc-CchH--------------------HHHHHHHHHcCCEEEEEeccC----C-----ccccCHHHHHHH
Q 007454 184 NISENDYVYDYE-SEAV--------------------EAMIRTSEKRGARVMSAEFSW----P-----RLRINSEKLRKM 233 (603)
Q Consensus 184 na~~~e~vf~~e-s~sV--------------------~~~~~~a~~~Ga~V~~~~~~~----~-----~g~i~~~~L~~~ 233 (603)
|.+ +++++.. ++++ ......++..|+++..++++. . ++.++.++|+++
T Consensus 89 ~~~--~~~~~~~gt~a~~~al~~l~~~gdi~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~ 166 (456)
T 2ez2_A 89 GFK--HIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKL 166 (456)
T ss_dssp CCS--EEEEESSHHHHHHHHHHHHCCTTCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHH
T ss_pred CCC--cEEEeCCcHHHHHHHHHHhCCCCCEeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHH
Confidence 764 4544321 0111 112344566799999888761 1 257899999999
Q ss_pred HhhcCCCCCCeeEEEEeCccc-ccccccc---HHHH-HHHHhCCcEEEEeccccCC---------CCCCCCCCC------
Q 007454 234 VVSKGKKKKQRGLFVFPLHSR-MTGARYP---YLWM-RIAQENDWHILIDACALGP---------KDMDSFGLS------ 293 (603)
Q Consensus 234 l~~~~~~~~~t~Lv~~~~~Sn-~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~---------~~m~~ldls------ 293 (603)
|..+. +..+++|.+...+| .||..+| ++.| ++|+++|+++++|.++..| .......+.
T Consensus 167 i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 244 (456)
T 2ez2_A 167 IDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEM 244 (456)
T ss_dssp HHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHH
T ss_pred HHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhh
Confidence 97521 02358888887777 9999998 6644 5789999999999998763 100112110
Q ss_pred CCCCcEEEEcccccCCCCCCceEEEEEe-CCCCcCcCCCC--CCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454 294 LVRPDFLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 370 (603)
Q Consensus 294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vk-k~~~~~L~p~~--~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e 370 (603)
...+|++++|+||++|. | ..|+++.+ +++++.+.... ..|. ..
T Consensus 245 ~~~~d~~~~S~kk~~~~-~-~gG~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~ 290 (456)
T 2ez2_A 245 FSYADGCTMSGKKDCLV-N-IGGFLCMNDDEMFSSAKELVVVYEGM--------------------------------PS 290 (456)
T ss_dssp HTTCSEEEEETTTTTCC-S-SCEEEEESCHHHHHHHHHHHHHHTCC--------------------------------TT
T ss_pred cccCCEEEEeCcccCCC-C-ceeEEEECCHHHHHHHHHHHhhccCc--------------------------------cc
Confidence 12479999999999883 4 36777774 44443332110 0010 00
Q ss_pred cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454 371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~ 450 (603)
.+..+...+.++ ++...+.++ +...++.+.+.++|.+
T Consensus 291 ~~~~~~~~~~a~------------------------------------------a~~~~~~~~-~~~~~~~~~~~~~l~~ 327 (456)
T 2ez2_A 291 YGGLAGRDMEAM------------------------------------------AIGLREAMQ-YEYIEHRVKQVRYLGD 327 (456)
T ss_dssp TTTCCHHHHHHH------------------------------------------HHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred ccCcchhHHHHH------------------------------------------HHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 111122222111 222223333 4555666788889999
Q ss_pred HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEc----cCCCCcc-CHHHHHHHHhcCCcEE-eeCcccCccCCchhh
Q 007454 451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVF----DWKREKI-EPVLVQKLADRENISL-SYGSLHHIWFSDKYQ 524 (603)
Q Consensus 451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~----~~~g~~v-~~~~V~~Lad~~gI~l-r~G~~C~~~~~~~~~ 524 (603)
.|.++ | +.++.| ..+..+.+.+. +.+.+.+ ...+..+|+.++||.+ ..|.+|... .+.
T Consensus 328 ~L~~~------g---~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~- 391 (456)
T 2ez2_A 328 KLKAA------G---VPIVEP----VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR--NNV- 391 (456)
T ss_dssp HHHHT------T---CCBCSS----CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB--CTT-
T ss_pred HHhcC------C---CccccC----CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccccccccc--Ccc-
Confidence 99874 2 233344 24667777763 3333333 2222444546789985 457666331 111
Q ss_pred hhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCC-CCHHHHHHHHHHHHHHHhh
Q 007454 525 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 525 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~-tt~eDVd~l~~~l~~~l~~ 583 (603)
. +. . .....+.||+|++.. +|.+||+++++.|+++++.
T Consensus 392 ----~--------g~----~-----~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 392 ----T--------GE----H-----HRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp ----T--------CS----B-----CCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ----c--------cc----c-----ccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0 00 0 011236899999998 8999999999999999876
No 164
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.58 E-value=5.8e-14 Score=147.42 Aligned_cols=272 Identities=15% Similarity=0.088 Sum_probs=174.5
Q ss_pred HHHHHHHHHHc-CCCCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccCC-ccccCHH
Q 007454 173 SAMKKRIMDFL-NISENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSWP-RLRINSE 228 (603)
Q Consensus 173 ~~aR~~Ia~~l-na~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~-~g~i~~~ 228 (603)
.+.|++|++++ ++++++++++... ++ .......++..|+++..+++++. +..++.+
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 145 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLE 145 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHH
T ss_pred HHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHH
Confidence 36888888888 5677787664321 11 11223445677999999888643 2347999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCCCCCC--CCCCCCCcEEEE
Q 007454 229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKDMDSF--GLSLVRPDFLIC 302 (603)
Q Consensus 229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~m~~l--dls~~~~Dflv~ 302 (603)
+|+++|.. +++++.++..+|.||..+| ++.+ ++|+++|+++++|.++..... .++ -.+..+.++++.
T Consensus 146 ~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~i~~~ 218 (375)
T 3op7_A 146 KLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE-LDVPSIIEVYDKGIAVN 218 (375)
T ss_dssp HHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS-SCCCCHHHHCTTEEEEE
T ss_pred HHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc-cCCCchhhhcCCEEEEe
Confidence 99999863 6889999999999999999 7644 579999999999998665321 111 112345678999
Q ss_pred cccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454 303 SFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM 380 (603)
Q Consensus 303 S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~ 380 (603)
|++|.|| +.| +|++++++++++.+..... .-..+.+....+
T Consensus 219 s~sK~~~--~~G~r~G~v~~~~~l~~~~~~~~~-----------------------------------~~~~~~~~~~~~ 261 (375)
T 3op7_A 219 SLSKTYS--LPGIRIGWVAANHQVTDILRDYRD-----------------------------------YTMICAGVFDDL 261 (375)
T ss_dssp ESSSSSS--CGGGCCEEEECCHHHHHHHTTTGG-----------------------------------GTTSCCCHHHHH
T ss_pred EChhhcC--CcccceEEEEeCHHHHHHHHHHHh-----------------------------------hhccCCCcHHHH
Confidence 9999998 346 5888886665544432100 001111222221
Q ss_pred hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454 381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT 460 (603)
Q Consensus 381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~ 460 (603)
... .+++..+. .+++..++.+...++|.+.|.+++
T Consensus 262 ~~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~---- 296 (375)
T 3op7_A 262 VAQ----------------------------------------LALAHYQE-ILERNRHILEENLAILDQWIEEEP---- 296 (375)
T ss_dssp HHH----------------------------------------HHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHH----------------------------------------HHHhccHH-HHHHHHHHHHHHHHHHHHHHhhCC----
Confidence 111 34443322 255666677788888888888742
Q ss_pred CCCceEEEeCCCCCCCCCCEEEEEEccCCCCccC-HHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454 461 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE-PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK 539 (603)
Q Consensus 461 ~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~-~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~ 539 (603)
.+.++.|. .+..+-+.++.. ++ .+++++++.++||.++.|..|..
T Consensus 297 ----~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~~g~~~~~---------------------- 342 (375)
T 3op7_A 297 ----LVSYIRPA----VVSTSFVKIAVD----MPMEDFCLQLLQEHGVLLVPGNRFER---------------------- 342 (375)
T ss_dssp ----TEEECCCS----SSSCEEEEECCS----SCHHHHHHHHHHHHCEECEEGGGGTC----------------------
T ss_pred ----CceEecCC----CeEEEeEEcCCC----CCHHHHHHHHHHhCCEEEeChhhhCC----------------------
Confidence 26665543 233444444421 22 34456677788999987754321
Q ss_pred cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.+|+|++... +||+++++.|++++++
T Consensus 343 --------------~~~iRi~~~~~~--~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 343 --------------DGYVRLGFACEQ--ETLIKGLEKLSQFLRR 370 (375)
T ss_dssp --------------TTEEEECCCSCH--HHHHHHHHHHHHHHGG
T ss_pred --------------CCeEEEEecCCH--HHHHHHHHHHHHHHHH
Confidence 258999988644 9999999999998865
No 165
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.58 E-value=4.9e-13 Score=143.55 Aligned_cols=307 Identities=10% Similarity=0.077 Sum_probs=189.9
Q ss_pred CCceeeecCCCC---CC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIG---LF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179 (603)
Q Consensus 107 ~~~vYLDyaa~t---l~----~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~I 179 (603)
.+..|+|+++.. ++ ++.+++++.+.+... . ++++.... .....+.+++|
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~---------~--------~~~~~~~~-------~~~~~~l~~~l 95 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKL---------A--------HAAANDFY-------NIPQLELAKKL 95 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTS---------C--------CCSCSCSC-------CHHHHHHHHHH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhC---------c--------cccccccC-------CHHHHHHHHHH
Confidence 457899997654 33 789999887654311 0 01111111 13345677899
Q ss_pred HHHcCCC-CCcEEEecc-CchHHHHHHHHHH-cCCEEEEE-----------------------------------eccCC
Q 007454 180 MDFLNIS-ENDYVYDYE-SEAVEAMIRTSEK-RGARVMSA-----------------------------------EFSWP 221 (603)
Q Consensus 180 a~~lna~-~~e~vf~~e-s~sV~~~~~~a~~-~Ga~V~~~-----------------------------------~~~~~ 221 (603)
++++|++ +++++|+.. ++++...+..+.. .|.+|... +++ .
T Consensus 96 a~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~ 174 (419)
T 2eo5_A 96 VTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP-N 174 (419)
T ss_dssp HHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC-C
T ss_pred HHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC-c
Confidence 9999998 788888764 3455554444432 14444433 221 0
Q ss_pred c-----cc-----------cCHHHHH-HHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEec
Q 007454 222 R-----LR-----------INSEKLR-KMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDA 279 (603)
Q Consensus 222 ~-----g~-----------i~~~~L~-~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDA 279 (603)
. +. ++.++|+ +.|... ...+++++|.+...+|.||.+.| ++.+ ++|+++|+++++|.
T Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE 253 (419)
T 2eo5_A 175 PYRNPWHINGYENPSELVNRVIEFIEDYIFVNL-VPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDE 253 (419)
T ss_dssp SSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHT-CCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHhhc-cCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 0 10 3467888 888631 00125788888888889999887 8755 57899999999999
Q ss_pred ccc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCC
Q 007454 280 CAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC 355 (603)
Q Consensus 280 aq~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~ 355 (603)
++. .+.. +..++.....+|++++| |.||. + .++|+++++++++ .+ ....++
T Consensus 254 ~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~-G~~riG~~~~~~~~~-~~-~~~~~~-------------------- 308 (419)
T 2eo5_A 254 VQMGLGRTGKLFAIENFNTVPDVITLA--KALGG-GIMPIGATIFRKDLD-FK-PGMHSN-------------------- 308 (419)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT-TTSCCEEEEEEGGGC-CC---------------------------
T ss_pred cccCCccCcchhhHHhcCCCCCEEEec--ccccC-CccceEEEEEchHhh-cC-CcccCC--------------------
Confidence 986 3331 11233334578988666 98884 4 6789999998865 44 211000
Q ss_pred CCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH
Q 007454 356 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 435 (603)
Q Consensus 356 ~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~ 435 (603)
.-+.|..++++.. ++++.+++
T Consensus 309 ---------------t~~~n~~~~~aa~----------------------------------------aal~~~~~---- 329 (419)
T 2eo5_A 309 ---------------TFGGNALACAIGS----------------------------------------KVIDIVKD---- 329 (419)
T ss_dssp ---------------CCCCCHHHHHHHH----------------------------------------HHHHHHHH----
T ss_pred ---------------CCCCCHHHHHHHH----------------------------------------HHHHHHHH----
Confidence 0012333333322 46665443
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCccc
Q 007454 436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLH 515 (603)
Q Consensus 436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C 515 (603)
+.++++.++++|.+.|.++ - ..++ ..+.++.|.+.. ++. . ..+..+|. ++||.++.+
T Consensus 330 -~~~~~~~~~~~l~~~L~~~-~------~~~~--------~~g~~~~i~~~~-~~~-~-~~~~~~l~-~~Gv~v~~~--- 386 (419)
T 2eo5_A 330 -LLPHVNEIGKIFAEELQGL-A------DDVR--------GIGLAWGLEYNE-KKV-R-DRIIGESF-KRGLLLLPA--- 386 (419)
T ss_dssp -HHHHHHHHHHHHHHHHTTS-S------SEEE--------EETTEEEEECSC-HHH-H-HHHHHHHH-HTTEECEEE---
T ss_pred -HHHHHHHHHHHHHHHHHHh-h------hheE--------eeeEEEEEEEec-Ccc-H-HHHHHHHH-HCCCEEecC---
Confidence 6788899999999999765 1 1121 246677777631 001 1 22344444 689988743
Q ss_pred CccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 516 HIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+ .+.||+|+++.+|.+|++++++.|++++..
T Consensus 387 ----------------------------------~---~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 387 ----------------------------------G---RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp ----------------------------------T---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------C---CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 258999999999999999999999988753
No 166
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.57 E-value=3.1e-13 Score=145.19 Aligned_cols=255 Identities=15% Similarity=0.094 Sum_probs=162.3
Q ss_pred HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC------CCCCCeeEEEE-eCccccccccccHH---HH-HHHHhC
Q 007454 203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG------KKKKQRGLFVF-PLHSRMTGARYPYL---WM-RIAQEN 271 (603)
Q Consensus 203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~------~~~~~t~Lv~~-~~~Sn~TG~~~pl~---~i-~~a~e~ 271 (603)
...++..|+++..++.+. ++ ++.++|++.|...+ ...++++++.+ |..+|.||.++|.+ .+ ++|+++
T Consensus 146 ~~~~~~~g~~~~~v~~~~-~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~ 223 (425)
T 2r2n_A 146 LQSLHPLGCNIINVASDE-SG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY 223 (425)
T ss_dssp HHHHGGGTCEEEEECEET-TE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCEEEEeCcCC-CC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc
Confidence 344556788888888763 33 89999999986311 00135677755 89999999999986 33 468999
Q ss_pred CcEEEEecccc----CCCCCCCCCC---CCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceecccc
Q 007454 272 DWHILIDACAL----GPKDMDSFGL---SLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPA 342 (603)
Q Consensus 272 g~~vlvDAaq~----~~~~m~~ldl---s~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~ 342 (603)
|+++++|.++. .++ ...++ ...+.++++.|++|+|| + | +|++++++++++.+....
T Consensus 224 ~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~i~~~s~SK~~~-~--GlRiG~~~~~~~l~~~l~~~~---------- 288 (425)
T 2r2n_A 224 DFLIIEDDPYYFLQFNKF--RVPTFLSMDVDGRVIRADSFSKIIS-S--GLRIGFLTGPKPLIERVILHI---------- 288 (425)
T ss_dssp TCEEEEECTTGGGBSSSS--CCCCTGGGCTTSCEEEEEESTTTTC-S--TTCCEEEEEEHHHHHHHHHHH----------
T ss_pred CCEEEEECCcccccCCCC--CCCCccccCCCCCEEEEccchhhcc-C--ccceEEEecCHHHHHHHHHHH----------
Confidence 99999999875 233 12222 22345699999999998 3 6 799999876544333100
Q ss_pred ccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhH
Q 007454 343 KKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIE 422 (603)
Q Consensus 343 ~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (603)
. ...++.|..+..++.
T Consensus 289 ----------------------~---~~~~~~~~~~q~a~~--------------------------------------- 304 (425)
T 2r2n_A 289 ----------------------Q---VSTLHPSTFNQLMIS--------------------------------------- 304 (425)
T ss_dssp ----------------------H---TTTCSSCHHHHHHHH---------------------------------------
T ss_pred ----------------------H---HhcCCCCHHHHHHHH---------------------------------------
Confidence 0 012233444333322
Q ss_pred HHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHH
Q 007454 423 CRGLDQVDS----LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV 498 (603)
Q Consensus 423 ~~ald~~~~----iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V 498 (603)
.+++.... -.+..+.++.+..+++|.+.|.++- + | ++.+..| ..+..+.+.+++.. -..+.+
T Consensus 305 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~---~--~~~~~~p----~~g~~~~~~~~~~~---~~~~~~ 370 (425)
T 2r2n_A 305 -QLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL-T---G--LAEWHVP----AAGMFLWIKVKGIN---DVKELI 370 (425)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-S---S--SEEECCC----SBSSEEEEEETTCS---CCHHHH
T ss_pred -HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---C--CeEEeCC----CceEEEEEEeCCCC---CHHHHH
Confidence 23332110 1245666777788888888887631 1 1 1344444 24667778886521 122334
Q ss_pred HHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454 499 QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA 578 (603)
Q Consensus 499 ~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~ 578 (603)
.+++.++||.++.|..|.... ..+.+.||+|++. .+.+|++++++.|+
T Consensus 371 ~~~l~~~gv~v~pg~~f~~~~-------------------------------~~~~~~iRis~~~-~~~~~i~~~~~~l~ 418 (425)
T 2r2n_A 371 EEKAVKMGVLMLPGNAFYVDS-------------------------------SAPSPYLRASFSS-ASPEQMDVAFQVLA 418 (425)
T ss_dssp HTHHHHTTEECEEGGGGSSST-------------------------------TSCCCEEEEECSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEechhhhcCCC-------------------------------CCCCCEEEEEeCC-CCHHHHHHHHHHHH
Confidence 566678999999887764310 1123689999995 59999999999999
Q ss_pred HHHhhh
Q 007454 579 QFLDAD 584 (603)
Q Consensus 579 ~~l~~~ 584 (603)
+++.+.
T Consensus 419 ~~l~~~ 424 (425)
T 2r2n_A 419 QLIKES 424 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988653
No 167
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.56 E-value=1.5e-12 Score=140.77 Aligned_cols=310 Identities=9% Similarity=0.058 Sum_probs=189.8
Q ss_pred CCceeeecCC---CCC---CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFG---IGL---FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa---~tl---~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|||+++ ..+ .++.+++++.+.+... .+.+.. + ......+.+++|+
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la 117 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--------------------TICSRA--F---FSVPLGICERYLT 117 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTC--------------------SCCCTT--S---EEHHHHHHHHHHH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhC--------------------CCccCC--c---CCHHHHHHHHHHH
Confidence 5678999876 222 5788888877643211 111111 1 1245567888999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH---------cC-CEEEEEeccCC---------cc-------------c---
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK---------RG-ARVMSAEFSWP---------RL-------------R--- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~---------~G-a~V~~~~~~~~---------~g-------------~--- 224 (603)
+++| .++++|... ++++...+..+++ .| .+|...+..+. .+ .
T Consensus 118 ~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~ 195 (433)
T 1z7d_A 118 NLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSK 195 (433)
T ss_dssp HHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEE
T ss_pred hhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEE
Confidence 9987 466766643 3466555555542 24 56655432110 00 1
Q ss_pred ---cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc----cHHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCC
Q 007454 225 ---INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYLWM-RIAQENDWHILIDACALG-PKD--MDSFGLS 293 (603)
Q Consensus 225 ---i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~----pl~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls 293 (603)
.+.++|+++|.. +++++|.+...++.+|.+. +++.+ ++|+++|+++++|.+|.+ +.. +..++..
T Consensus 196 ~~~~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~ 270 (433)
T 1z7d_A 196 VPYDDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHY 270 (433)
T ss_dssp ECTTCHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred eCCCCHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhc
Confidence 267888888842 3588888887788899876 67755 589999999999999862 221 0112222
Q ss_pred CCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454 294 LVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 370 (603)
Q Consensus 294 ~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e 370 (603)
...||+++ +.|.+| + | +|++++++++++.+.+...+++ +
T Consensus 271 ~~~~di~t--~sK~l~--~-G~~~~G~v~~~~~~~~~l~~~~~~~t--------------------------------~- 312 (433)
T 1z7d_A 271 NVKPDVIL--LGKALS--G-GHYPISAVLANDDIMLVIKPGEHGST--------------------------------Y- 312 (433)
T ss_dssp TCCCSEEE--ECGGGG--T-TSSCCEEEEECHHHHTTCCTTCCCCT--------------------------------T-
T ss_pred CCCCCEEE--ECcccc--C-CCCCeEEEEECHHHHhhhcccccccc--------------------------------C-
Confidence 34699885 559998 3 6 9999999877655543111110 0
Q ss_pred cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454 371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~ 450 (603)
+.|..+.++.. ++++.+++ +.+.++++.+.++|.+
T Consensus 313 --~~~~~~~aaa~----------------------------------------aal~~~~~---~~~~~~~~~~~~~l~~ 347 (433)
T 1z7d_A 313 --GGNPLAASICV----------------------------------------EALNVLIN---EKLCENAEKLGGPFLE 347 (433)
T ss_dssp --TTCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHH----------------------------------------HHHHHHHh---ccHHHHHHHHHHHHHH
Confidence 11222222211 46666554 2456788889999999
Q ss_pred HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454 451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 530 (603)
Q Consensus 451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~ 530 (603)
+|.++.. +.|.+... ...|.++.|.+.+.. .....+.+.+.++||.++.+
T Consensus 348 ~L~~l~~----~~~~~~~~-----~~~g~~~~i~~~~~~---~~~~~~~~~l~~~Gv~v~~~------------------ 397 (433)
T 1z7d_A 348 NLKRELK----DSKIVRDV-----RGKGLLCAIEFKNEL---VNVLDICLKLKENGLITRDV------------------ 397 (433)
T ss_dssp HHHHHHT----TCTTEEEE-----EEETTEEEEEECTTT---CCHHHHHHHHHHTTEECCEE------------------
T ss_pred HHHHHHH----hCCCeEEE-----EeeeeEEEEEEccCh---hHHHHHHHHHHHCCeEEecC------------------
Confidence 9987621 12333211 125778888886531 12233433334579887632
Q ss_pred HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+.+.||+++++..|.|||+++++.|+++++.
T Consensus 398 ----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 398 ----------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp ----------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 0148999999999999999999999998764
No 168
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.56 E-value=6.2e-13 Score=142.21 Aligned_cols=288 Identities=12% Similarity=0.065 Sum_probs=173.1
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCc-hHH--HHHHHHH--------------------------------HcCCEEEEEe
Q 007454 173 SAMKKRIMDFLNISENDYVYDYESE-AVE--AMIRTSE--------------------------------KRGARVMSAE 217 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV~--~~~~~a~--------------------------------~~Ga~V~~~~ 217 (603)
.+.|+.|++++++++++++++.... ++. .++.... ..|+++..++
T Consensus 73 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 152 (423)
T 3ez1_A 73 PSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVD 152 (423)
T ss_dssp HHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEecc
Confidence 4799999999999999999876553 442 2333222 2345555555
Q ss_pred ccCCccccCHHHHHHHHhhcCCCCCCeeEEE-EeCccccccccccHHHH---H-HH-HhCCcEEEEeccccCCC----C-
Q 007454 218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYLWM---R-IA-QENDWHILIDACALGPK----D- 286 (603)
Q Consensus 218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~-~~~~Sn~TG~~~pl~~i---~-~a-~e~g~~vlvDAaq~~~~----~- 286 (603)
.+. ++ ++.++|++.|.. .+++++|. .|..+|.||.++|.+.+ . +| +++|+++++|.++.... .
T Consensus 153 ~~~-~g-~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~ 226 (423)
T 3ez1_A 153 MQS-DG-PDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDR 226 (423)
T ss_dssp EET-TE-ECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSC
T ss_pred CCC-CC-CCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCC
Confidence 552 33 899999999952 13688885 57999999999999733 2 46 88999999999876311 0
Q ss_pred CCCCCC-------CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCc
Q 007454 287 MDSFGL-------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 359 (603)
Q Consensus 287 m~~ldl-------s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 359 (603)
....++ ...+.++++.|++|+++ +..++|+++.++++++.+.... .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~G~r~G~~~~~~~~~~~~~~~~------------~-------------- 279 (423)
T 3ez1_A 227 AEPVNFVVLARDAGYPDRAFVFASTSKITF-AGAGLGFVASSEDNIRWLSKYL------------G-------------- 279 (423)
T ss_dssp CCCCCHHHHHHHHTCTTSEEEEEESTTTSC-SSSSCEEEEECHHHHHHHHHHH------------H--------------
T ss_pred CCCcchhhhhhccCCCCeEEEEeCchhhcc-CCcceEEEEeCHHHHHHHHHHH------------h--------------
Confidence 011122 13356799999999754 3567899988776544332100 0
Q ss_pred ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454 360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR 439 (603)
Q Consensus 360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~ 439 (603)
....+.+.....++. ..+.. + ...-.+++.+ -.+.+.+
T Consensus 280 ---------~~~~~~~~~~~~a~~------------~~l~~-----~---------------~~~~~~~~~~-~~~~~~~ 317 (423)
T 3ez1_A 280 ---------AQSIGPNKVEQARHV------------KFLTE-----Y---------------PGGLEGLMRD-HAAIIAP 317 (423)
T ss_dssp ---------HSCSCCCHHHHHHHH------------HHHHH-----S---------------TTHHHHHHHH-HHHHHHH
T ss_pred ---------hhccCCCHHHHHHHH------------HHHHh-----c---------------cchHHHHHHH-HHHHHHH
Confidence 001111222211111 00000 0 0000111111 1223334
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCc-eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEee-CcccCc
Q 007454 440 RGRCLINWLVNALMKLQHPNTEGNA-LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSY-GSLHHI 517 (603)
Q Consensus 440 r~~~L~~~L~~~L~~L~h~~~~g~p-lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~-G~~C~~ 517 (603)
+...|.+.|.+.|..+ + .++++.|. .+..+.+.+++. ....+.+++.++||.++. |.+|..
T Consensus 318 ~~~~l~~~l~~~l~~~--------~~~~~~~~p~----~g~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~~g~~~~~ 380 (423)
T 3ez1_A 318 KFRAVDEVLRAELGEG--------GEYATWTLPK----GGYFISLDTAEP-----VADRVVKLAEAAGVSLTPAGATYPA 380 (423)
T ss_dssp HHHHHHHHHHHHHTTT--------TSSEEECCCS----BSSCEEEEESSS-----CHHHHHHHHHHTTEECCCTTTTSST
T ss_pred HHHHHHHHHHHhcCcC--------CCceEEeCCC----ccEEEEEECCCC-----cHHHHHHHHHHCCcEEecCcccccC
Confidence 4444555555555443 2 26666553 466788888753 245577777889999998 655532
Q ss_pred cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
+. ....+.||+|++.. +.+||+++++.|++++.+-
T Consensus 381 ~~-------------------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 381 GQ-------------------------------DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp TC-------------------------------CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CC-------------------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 10 12236999999987 9999999999999998764
No 169
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.55 E-value=1.2e-13 Score=146.39 Aligned_cols=311 Identities=12% Similarity=0.086 Sum_probs=190.1
Q ss_pred CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|++++.+ .++.+++++.+.+... +. .. .. + ......+.+++++
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~--------~~---------~~---~~--~---~~~~~~~l~~~la 91 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKF--------WH---------TG---NG--Y---TNEPVLRLAKKLI 91 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC--------SC---------CC---TT--S---CCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhc--------cc---------cc---CC--c---CCHHHHHHHHHHH
Confidence 5678999988732 2788888877643211 00 00 00 0 1245678999999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH-------cC-CEEEEEeccCCcc------------------------c---
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK-------RG-ARVMSAEFSWPRL------------------------R--- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~G-a~V~~~~~~~~~g------------------------~--- 224 (603)
+++|.+ +++|+.. ++++...+..+.. .| .+|......+... .
T Consensus 92 ~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (406)
T 4adb_A 92 DATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAA 169 (406)
T ss_dssp HHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEEC
T ss_pred hhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeC
Confidence 999864 7777654 3455555555543 44 6666654332111 1
Q ss_pred -cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc-----cHHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCC
Q 007454 225 -INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-----PYLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSL 294 (603)
Q Consensus 225 -i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~-----pl~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~ 294 (603)
.+.++|++.|. +++++|.+. -+|.||.++ +++.+ ++|+++|+++++|.++. .+.. +..++...
T Consensus 170 ~~d~~~l~~~l~------~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 242 (406)
T 4adb_A 170 YNDINSASALID------DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYG 242 (406)
T ss_dssp TTCHHHHHTTCS------TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHT
T ss_pred CCcHHHHHHHhc------CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcC
Confidence 36778877775 368898888 457777655 45544 47899999999999885 2210 01122223
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC
Q 007454 295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN 374 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~ 374 (603)
..+|+++ ++|.|| +...+|++++++++++.+.+...+++ .+.
T Consensus 243 ~~~d~~t--~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~ 284 (406)
T 4adb_A 243 VTPDLLT--TAKALG-GGFPVGALLATEECARVMTVGTHGTT-----------------------------------YGG 284 (406)
T ss_dssp CCCSEEE--ECGGGG-TTSCCEEEEECHHHHHTCCTTSSCCS-----------------------------------STT
T ss_pred CCCCEEE--echhhc-CCCCeEEEEEcHHHHhhhccCCcCCC-----------------------------------CCC
Confidence 4688885 599998 22349999998877655553211110 012
Q ss_pred ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Q 007454 375 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK 454 (603)
Q Consensus 375 n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~ 454 (603)
|..+..+.. ++++.++ .+.+.++.+.+.+++.+.|.+
T Consensus 285 ~~~~~~a~~----------------------------------------~~l~~~~---~~~~~~~~~~~~~~l~~~l~~ 321 (406)
T 4adb_A 285 NPLASAVAG----------------------------------------KVLELIN---TPEMLNGVKQRHDWFVERLNT 321 (406)
T ss_dssp CHHHHHHHH----------------------------------------HHHHHHS---SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH----------------------------------------HHHHHHH---hcCHHHHHHHHHHHHHHHHHH
Confidence 222222211 3555442 367788889999999999987
Q ss_pred CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454 455 LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKT 534 (603)
Q Consensus 455 L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~ 534 (603)
+.. ..+.+.-. ...+.++.|.+.+... .....+.+.+.++||.++.+.
T Consensus 322 ~~~----~~~~~~~~-----~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~--------------------- 369 (406)
T 4adb_A 322 INH----RYGLFSEV-----RGLGLLIGCVLNADYA--GQAKQISQEAAKAGVMVLIAG--------------------- 369 (406)
T ss_dssp HHH----HHCCEEEE-----EEETTEEEEEECTTTT--TCHHHHHHHHHHTTEECEESS---------------------
T ss_pred HHH----hCCCceEE-----EEEEEEEEEEEeCCcH--HHHHHHHHHHHHCCcEEeecC---------------------
Confidence 521 00111100 1247789999876321 123334444445699887430
Q ss_pred hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.+.||+++++.+|.+||+++++.|++++.+
T Consensus 370 -------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 370 -------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEH 399 (406)
T ss_dssp -------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 258999999999999999999999998865
No 170
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.55 E-value=6.1e-13 Score=142.78 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCc-hH--HHHHHHHH---------------------------------HcCCEEEEE
Q 007454 173 SAMKKRIMDFLNISENDYVYDYESE-AV--EAMIRTSE---------------------------------KRGARVMSA 216 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV--~~~~~~a~---------------------------------~~Ga~V~~~ 216 (603)
.+.|+.|++++++++++++++..+. ++ ..+..... ..|+++..+
T Consensus 79 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v 158 (422)
T 3d6k_A 79 ADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINV 158 (422)
T ss_dssp HHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEec
Confidence 4799999999999999999876543 33 22223222 235556666
Q ss_pred eccCCccccCHHHHHHHHhhcCCCCCCeeEEE-EeCccccccccccHHHH----HHHH-hCCcEEEEeccccC----CC-
Q 007454 217 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYLWM----RIAQ-ENDWHILIDACALG----PK- 285 (603)
Q Consensus 217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~-~~~~Sn~TG~~~pl~~i----~~a~-e~g~~vlvDAaq~~----~~- 285 (603)
+++. ++ ++.++|++.+.. .++++|. +|..+|.||.++|.+.+ ++|+ ++|++|++|.++.. ..
T Consensus 159 ~~~~-~g-~d~~~l~~~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~ 231 (422)
T 3d6k_A 159 PMTD-EG-PDMGVVRELVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF 231 (422)
T ss_dssp EEET-TE-ECHHHHHHHHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred CCCC-CC-CCHHHHHHHHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC
Confidence 6653 44 899999999863 2578777 79999999999999733 2456 89999999999852 11
Q ss_pred -CCCCC-C----CCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCc
Q 007454 286 -DMDSF-G----LSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPIL 328 (603)
Q Consensus 286 -~m~~l-d----ls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L 328 (603)
...++ + +...+.++++.|+.|+++ | ..+|++++++++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~--~GlriG~~~~~~~l~~~l 279 (422)
T 3d6k_A 232 PIVHNVIEFAQAAGNPNRFWFMSSTSKITH--AGSGVSFFASSKENIEWY 279 (422)
T ss_dssp CCCCCHHHHHHHTTCTTCEEEEEESTTTSC--TTSSCEEEECCHHHHHHH
T ss_pred CCCcChhhHhhccCCCCcEEEEcChhhhcC--cccceEEEEeCHHHHHHH
Confidence 00122 1 123457899999999844 5 2389999876654333
No 171
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.55 E-value=2.4e-12 Score=139.57 Aligned_cols=307 Identities=11% Similarity=0.089 Sum_probs=190.2
Q ss_pred CCceeeecCCC---CC---CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI---GL---FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~---tl---~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|+++. .. .++.+++++.+.+... .+.+.. + ......+.+++++
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la 128 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--------------------TLTSRA--F---YNNVLGEYEEYIT 128 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTC--------------------SCCCTT--S---EESSHHHHHHHHH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhc--------------------CcccCc--c---CCHHHHHHHHHHH
Confidence 56789998772 22 6788999877643211 000000 0 1123457788899
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH---------cC-CEEEEEeccCC---------cc-------------c---
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK---------RG-ARVMSAEFSWP---------RL-------------R--- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~---------~G-a~V~~~~~~~~---------~g-------------~--- 224 (603)
+++| .++++|... ++++...+..+++ .| .+|...+..+. .+ .
T Consensus 129 ~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~ 206 (439)
T 2oat_A 129 KLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDI 206 (439)
T ss_dssp HHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEE
T ss_pred HhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEE
Confidence 9887 456666643 3456555555542 24 56766543221 01 1
Q ss_pred ---cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc----cHHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCC
Q 007454 225 ---INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYLWM-RIAQENDWHILIDACALG-PKD--MDSFGLS 293 (603)
Q Consensus 225 ---i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~----pl~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls 293 (603)
.+.++|++.|.. +++++|.+...++.+|.+. +++.+ ++|+++|+++++|.+|.+ +.. +..++..
T Consensus 207 ~~~~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~ 281 (439)
T 2oat_A 207 IPYNDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYE 281 (439)
T ss_dssp ECSSCHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred eCCCCHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHh
Confidence 267888888852 3578888877788899877 67755 589999999999999852 221 1112333
Q ss_pred CCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454 294 LVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV 370 (603)
Q Consensus 294 ~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e 370 (603)
...||++ ++.|.+| + | +|++++++++++.+.+...+++ +
T Consensus 282 ~~~~Di~--t~sK~l~--~-G~~~~G~v~~~~~~~~~l~~~~~~~t--------------------------------~- 323 (439)
T 2oat_A 282 NVRPDIV--LLGKALS--G-GLYPVSAVLCDDDIMLTIKPGEHGST--------------------------------Y- 323 (439)
T ss_dssp TCCCSEE--EECGGGG--T-TSSCCEEEEECHHHHTTSCTTSSCCS--------------------------------S-
T ss_pred CCCCcEE--Eeccccc--C-CCCCeEEEEECHHHHhccCCCCcccC--------------------------------C-
Confidence 3468987 5569998 3 5 9999999877655543111100 0
Q ss_pred cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454 371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN 450 (603)
Q Consensus 371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~ 450 (603)
+.|..+.++.. ++++.+.+ +.+.++++.+.++|.+
T Consensus 324 --~~~~~~~aaa~----------------------------------------aal~~~~~---~~~~~~~~~~~~~l~~ 358 (439)
T 2oat_A 324 --GGNPLGCRVAI----------------------------------------AALEVLEE---ENLAENADKLGIILRN 358 (439)
T ss_dssp --TTCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHH
T ss_pred --CcCHHHHHHHH----------------------------------------HHHHHHhh---hhHHHHHHHHHHHHHH
Confidence 11222222111 46666654 2456788999999999
Q ss_pred HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454 451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 529 (603)
Q Consensus 451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~ 529 (603)
+|.++.+ +.+... ...|.++.+.+.+..+ .... +.++|. ++||.++.+
T Consensus 359 ~L~~l~~------~~~~~~-----~~~g~~~~v~l~~~~~--~~~~~l~~~l~-~~Gv~v~~~----------------- 407 (439)
T 2oat_A 359 ELMKLPS------DVVTAV-----RGKGLLNAIVIKETKD--WDAWKVCLRLR-DNGLLAKPT----------------- 407 (439)
T ss_dssp HHTTSCT------TTEEEE-----EEETTEEEEEECCCSS--CCHHHHHHHHH-HTTEECCBS-----------------
T ss_pred HHHHhcC------CCcEEE-----EeeeeEEEEEEecCcc--HHHHHHHHHHH-HCCeEEecC-----------------
Confidence 9988732 333211 1257888888865321 1223 344444 578887531
Q ss_pred HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
+.+.||+++++..|.+||+++++.|+++++
T Consensus 408 -----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 408 -----------------------HGDIIRFAPPLVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp -----------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 125899999999999999999999998875
No 172
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.54 E-value=6e-13 Score=143.14 Aligned_cols=312 Identities=9% Similarity=0.047 Sum_probs=190.0
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|||.++. ++.++.+++++.+.+... .+.++. + .....++.+++++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la 109 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--------------------WHTSNV--F---TNEPALRLGRKLI 109 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC--------------------CCCCTT--S---CCHHHHHHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhc--------------------ccccCc--c---CCHHHHHHHHHHH
Confidence 56789999764 345788888877643311 111111 1 1345678999999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH-------cC-CEEEEEeccCCc---------cc------------------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK-------RG-ARVMSAEFSWPR---------LR------------------ 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~G-a~V~~~~~~~~~---------g~------------------ 224 (603)
+++| .++++|... ++++...+..+.. .| .+|......+.. +.
T Consensus 110 ~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~ 187 (420)
T 2pb2_A 110 DATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVP 187 (420)
T ss_dssp HHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEEC
T ss_pred hhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEec
Confidence 9997 467777653 3466655565544 45 366665432210 10
Q ss_pred -cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccc-ccc---HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCC
Q 007454 225 -INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYP---YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLV 295 (603)
Q Consensus 225 -i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~-~~p---l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~ 295 (603)
.+.++|++.|.. ++++|.+...+|.+|. .+| ++.+ ++|+++|+++++|.+|.+ +.. +..++....
T Consensus 188 ~~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~ 261 (420)
T 2pb2_A 188 FNDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV 261 (420)
T ss_dssp TTCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC
T ss_pred CCCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC
Confidence 267888888753 6889988888888886 244 4544 478999999999999852 221 011122234
Q ss_pred CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454 296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT 375 (603)
Q Consensus 296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n 375 (603)
.+|+++ +.|.||. ...+|++++++++++.+.+...+++ + +.|
T Consensus 262 ~~diit--~sK~l~~-G~~iG~~~~~~~l~~~l~~~~~~~t--------------------------------~---~~~ 303 (420)
T 2pb2_A 262 TPDILT--SAKALGG-GFPVSAMLTTQEIASAFHVGSHGST--------------------------------Y---GGN 303 (420)
T ss_dssp CCSEEE--ECGGGGT-TSCCEEEEECHHHHTTCC----CCE--------------------------------E---CCC
T ss_pred CCCeEE--ecccccC-CCceEEEEEhHHHHHhhcCCCcCcc--------------------------------c---CcC
Confidence 689885 5699983 3459999999876554543111100 0 112
Q ss_pred hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454 376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL 455 (603)
Q Consensus 376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L 455 (603)
..+.++.. ++|+.+++ +.+.++.+.+.++|.+.|.++
T Consensus 304 ~~~~aa~~----------------------------------------a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~ 340 (420)
T 2pb2_A 304 PLACAVAG----------------------------------------AAFDIINT---PEVLQGIHTKRQQFVQHLQAI 340 (420)
T ss_dssp HHHHHHHH----------------------------------------HHHHHHSS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------------------HHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence 22222111 45665432 567788889999999999876
Q ss_pred CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454 456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD 535 (603)
Q Consensus 456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~ 535 (603)
.. +.|.+.... ..|.++.|.+.+..+ .....+.+.+.++||.++.|
T Consensus 341 ~~----~~~~~~~~~-----~~g~~~~v~~~~~~~--~~~~~l~~~l~~~Gi~v~~~----------------------- 386 (420)
T 2pb2_A 341 DE----QFDIFSDIR-----GMGLLIGAELKPKYK--GRARDFLYAGAEAGVMVLNA----------------------- 386 (420)
T ss_dssp HH----HHCCEEEEE-----EETTEEEEEECGGGT--TCHHHHHHHHHHTTEECEES-----------------------
T ss_pred Hh----cCCCeEEEE-----ecceEEEEEECCCch--HHHHHHHHHHHHCCCEEEeC-----------------------
Confidence 20 012232211 247888888865211 12233433334488887643
Q ss_pred cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+ .+.||+|+++..|.|||+++++.|+++++.
T Consensus 387 --------------~---~~~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 387 --------------G---ADVMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp --------------S---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------C---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 148999999999999999999999998754
No 173
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.2e-14 Score=151.42 Aligned_cols=280 Identities=9% Similarity=0.083 Sum_probs=176.3
Q ss_pred HHHHHHHHHc----C--CCCCcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCC----
Q 007454 174 AMKKRIMDFL----N--ISENDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWP---- 221 (603)
Q Consensus 174 ~aR~~Ia~~l----n--a~~~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~---- 221 (603)
+.|+.|++++ | +++++++++... +++.. ....++..|+++..++++..
T Consensus 99 ~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 178 (447)
T 3b46_A 99 SLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELD 178 (447)
T ss_dssp HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccc
Confidence 5677777776 4 456778665321 12211 22344567888888887532
Q ss_pred -------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccCCC---CC
Q 007454 222 -------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALGPK---DM 287 (603)
Q Consensus 222 -------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~~~---~m 287 (603)
+..++.++|++.|. ++++++.++..+|.||.++|. +.+ ++|+++|+++++|.++.... ..
T Consensus 179 ~~~~~~~~~~~d~~~l~~~l~------~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~ 252 (447)
T 3b46_A 179 QRNTRGEEWTIDFEQFEKAIT------SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSF 252 (447)
T ss_dssp TSCBCSTTSEECHHHHHTTCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC
T ss_pred cccccccCcccCHHHHHHhhc------cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCC
Confidence 34689999998885 268999999999999999874 433 47899999999999876421 00
Q ss_pred CCC-CC--CCCCCcEEEEcccccCCCCCCc--eEEEEE-eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCccc
Q 007454 288 DSF-GL--SLVRPDFLICSFYQIFGENPSG--FGCLFV-KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ 361 (603)
Q Consensus 288 ~~l-dl--s~~~~Dflv~S~hK~fG~~P~G--~G~L~v-kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~ 361 (603)
.++ .+ ...+.|+++.|++|+|| +.| +|++++ ++++++.+....
T Consensus 253 ~~~~~~~~~~~~~~i~i~S~sK~~~--~~G~riG~~~~~~~~l~~~l~~~~----------------------------- 301 (447)
T 3b46_A 253 TRIATLSPEIGQLTLTVGSAGKSFA--ATGWRIGWVLSLNAELLSYAAKAH----------------------------- 301 (447)
T ss_dssp CCGGGSCHHHHTTEEEEEEHHHHTT--CTTSCCEEEECSCHHHHHHHHHHH-----------------------------
T ss_pred cCHHHcCCCCCCcEEEEecCchhcC--CcchhhEEEEeCCHHHHHHHHHHH-----------------------------
Confidence 121 12 13478999999999999 558 999998 665543332100
Q ss_pred CcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHH
Q 007454 362 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRR 440 (603)
Q Consensus 362 ~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r 440 (603)
. ....+.+.+...++. ++|+..... .++.+.++
T Consensus 302 ---~---~~~~~~~~~~~~a~~----------------------------------------~aL~~~~~~~~~~~~~~~ 335 (447)
T 3b46_A 302 ---T---RICFASPSPLQEACA----------------------------------------NSINDALKIGYFEKMRQE 335 (447)
T ss_dssp ---H---HHTSSCCHHHHHHHH----------------------------------------HHHHHHHHHTHHHHHHHH
T ss_pred ---h---hccCCCChHHHHHHH----------------------------------------HHHhCCcchHHHHHHHHH
Confidence 0 011223333332222 355543211 26678888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC---C---------CccCHHHHHHHHhcCCcE
Q 007454 441 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK---R---------EKIEPVLVQKLADRENIS 508 (603)
Q Consensus 441 ~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~---g---------~~v~~~~V~~Lad~~gI~ 508 (603)
.+.++++|.+.|.++ | ++++.|. .+..+.+.+.+.. + ..-..+++++|++++||.
T Consensus 336 ~~~~~~~l~~~L~~~------g---~~~~~~~----~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~ 402 (447)
T 3b46_A 336 YINKFKIFTSIFDEL------G---LPYTAPE----GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVV 402 (447)
T ss_dssp HHHHHHHHHHHHHHH------T---CCEECCS----BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHC------C---CeecCCC----eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEE
Confidence 899999999999876 2 3344442 3556777776421 0 011124556677789999
Q ss_pred EeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 509 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 509 lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
++.|..|..... .....+.||+|++. +.|||++.++.|+++
T Consensus 403 v~pg~~f~~~~~-----------------------------~~~~~~~iRls~~~--~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 403 AIPPTEFYIKEH-----------------------------EKAAENLLRFAVCK--DDAYLENAVERLKLL 443 (447)
T ss_dssp CBCGGGGSCGGG-----------------------------GGGGTTEEEEECCS--CHHHHHHHHHHGGGG
T ss_pred EECchHhCCCCc-----------------------------cCCCCCEEEEEEeC--CHHHHHHHHHHHHHH
Confidence 988865532100 00113689999984 899999999988764
No 174
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.54 E-value=1.1e-13 Score=148.54 Aligned_cols=321 Identities=12% Similarity=0.087 Sum_probs=186.2
Q ss_pred CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454 107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-- 183 (603)
Q Consensus 107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-- 183 (603)
++.|+|+.+... +.++.+++++.+.+... ++.+....|+.. ....+.|++|++++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--------------------~~~~~~~~y~~~--~g~~~l~~~ia~~~~~ 113 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHEL--------------------STIEGYSGYGAE--QGAKPLRAAIAKTFYG 113 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHHT--------------------TSTTTCCCCCCT--TCCHHHHHHHHHHHHT
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcc--------------------cccCCccCCCCC--CCCHHHHHHHHHHHHc
Confidence 457888877655 46788888876543211 111111111110 11246788888886
Q ss_pred --CCCCCcEEEeccCc-hHHHHHHHHHHcCCEEEEEeccCCccccCHH----------------------------HHHH
Q 007454 184 --NISENDYVYDYESE-AVEAMIRTSEKRGARVMSAEFSWPRLRINSE----------------------------KLRK 232 (603)
Q Consensus 184 --na~~~e~vf~~es~-sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~----------------------------~L~~ 232 (603)
++++++++|+.... ++..+ ...-+.|.+|......|+.- ++.- .+..
T Consensus 114 ~~~~~~~~i~~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (432)
T 3ei9_A 114 GLGIGDDDVFVSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAY-VDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFP 191 (432)
T ss_dssp TTTCCGGGEEEESCHHHHHHHH-HHHHCTTCCEEEEESCCTHH-HHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSC
T ss_pred cCCCCcceEEECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHH-HHHHHHcCCcccccccccccCceEEeccCcccCCcC
Confidence 88899998876543 33322 22234455555544443210 0000 0000
Q ss_pred HHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC---CCCCCCCCCCC----CCCcEEE
Q 007454 233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG---PKDMDSFGLSL----VRPDFLI 301 (603)
Q Consensus 233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~---~~~m~~ldls~----~~~Dflv 301 (603)
.+.. .++++++.+...+|.||.++|.+.+ ++|+++|+++++|.++.. +. .+..+.. .+.++++
T Consensus 192 ~l~~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~--~~~~~~~~~~~~~~~i~~ 265 (432)
T 3ei9_A 192 DLST----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD--NPRSIFEIPGAEEVAMET 265 (432)
T ss_dssp CGGG----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS--CCSSGGGSTTGGGTEEEE
T ss_pred Chhh----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCC--CCCChhhcCCCCCeEEEE
Confidence 0111 2468899999999999999997633 358999999999998762 22 1222222 2467999
Q ss_pred EcccccCCCCCCc--eEEEEEeCCCCcC-cCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454 302 CSFYQIFGENPSG--FGCLFVKKSTVPI-LVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG 378 (603)
Q Consensus 302 ~S~hK~fG~~P~G--~G~L~vkk~~~~~-L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g 378 (603)
.|++|.|| +.| +|+++++++.+.. ..+. .. . + .. . .. ...++++..+
T Consensus 266 ~S~SK~~g--~~G~r~G~~~~~~~~~~~~~~~~-----~~------~-~--~~-----~-------~~--~~~~~~~~~~ 315 (432)
T 3ei9_A 266 ASFSNYAG--FTGVRLGWTVIPKKLLYSDGFPV-----AK------D-F--NR-----I-------IC--TCFNGASNIS 315 (432)
T ss_dssp EESHHHHC--TTTTCCEEEECCTTCBCTTSCBH-----HH------H-H--HH-----H-------HH--HSCCCSCHHH
T ss_pred ecchhccC--CcccceEEEEEChHHhhcchHHH-----HH------H-H--HH-----H-------hc--cccCCCCHHH
Confidence 99999999 446 7999988876311 0000 00 0 0 00 0 00 1122334443
Q ss_pred hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454 379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP 458 (603)
Q Consensus 379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~ 458 (603)
..+.. ++++....-.++.+.++++.++++|.+.|.++
T Consensus 316 ~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 352 (432)
T 3ei9_A 316 QAGAL----------------------------------------ACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL--- 352 (432)
T ss_dssp HHHHH----------------------------------------HHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHH----------------------------------------HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC---
Confidence 33221 12211000125677788888999999999875
Q ss_pred CCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454 459 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA 538 (603)
Q Consensus 459 ~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~ 538 (603)
| +++++|. .+..+.+.+++.+ ..+++.+|+++.||.++.|..|.+
T Consensus 353 ---g---~~~~~~~----~~~~~~~~~~~~~----~~~~~~~ll~~~gv~v~~g~~f~~--------------------- 397 (432)
T 3ei9_A 353 ---G---YDVYGGK----NAPYVWVHFPNQS----SWDVFAEILEKTHVVTTPGSGFGP--------------------- 397 (432)
T ss_dssp ---T---CCEEECS----SSSEEEEECTTSC----HHHHHHHHHHHHCEECEEGGGGCG---------------------
T ss_pred ---C---ceecCCC----cceEEEEECCCCC----HHHHHHHHHHHCCEEEeCchHhCC---------------------
Confidence 2 4455542 4677888887432 234567788888999999876632
Q ss_pred ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454 539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580 (603)
Q Consensus 539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~ 580 (603)
.+.+.||+|+ .++.|||++.++.|++-
T Consensus 398 -------------~~~~~iRis~--~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 398 -------------GGEGFVRVSA--FGHRENILEACRRFKQL 424 (432)
T ss_dssp -------------GGTTEEEEEC--CSCHHHHHHHHHHHHHH
T ss_pred -------------CCCCEEEEEe--cCCHHHHHHHHHHHHHH
Confidence 1126899996 67999999999887753
No 175
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.54 E-value=8.9e-14 Score=148.02 Aligned_cols=302 Identities=11% Similarity=0.004 Sum_probs=170.7
Q ss_pred HHHHHHHHH-HHHcCCCCCcEEEecc-CchH----------------------HHHHHHHHHcCCEEEEEeccCCccccC
Q 007454 171 LESAMKKRI-MDFLNISENDYVYDYE-SEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRIN 226 (603)
Q Consensus 171 ~~~~aR~~I-a~~lna~~~e~vf~~e-s~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~ 226 (603)
...+.|++| ++++|. .++.++... +.++ ......++..|++++.+++++.++.++
T Consensus 37 ~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d 115 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMD 115 (377)
T ss_dssp HHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred HHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcC
Confidence 356788889 999983 334443211 1111 112334566799999999886678899
Q ss_pred HHHHHHHH-hhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCC---CCcEEE
Q 007454 227 SEKLRKMV-VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLV---RPDFLI 301 (603)
Q Consensus 227 ~~~L~~~l-~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~---~~Dflv 301 (603)
.++|+++| ..+ ++|+++. .+|.+|...|++.+ ++|+ +|++|++|++|..+. ..+.... ..|+.+
T Consensus 116 ~~~l~~~i~~~~----~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~---~~~~~~~g~~~~d~~~ 184 (377)
T 3ju7_A 116 KTVLWDKIEELK----EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGL---MNGGMHYGQDFSGMII 184 (377)
T ss_dssp HHHHHHHHHHHG----GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTC---EETTEETTTTCSSEEE
T ss_pred HHHHHHHHhcCC----CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCC---eECCEeccCCCCcEEE
Confidence 99999998 431 1388876 35789999999865 5899 999999999998875 2222222 246666
Q ss_pred Ec--ccccCCCCCCceEEEEE-eCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 302 CS--FYQIFGENPSGFGCLFV-KKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 302 ~S--~hK~fG~~P~G~G~L~v-kk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
+| .||++| + |.|.+++ ++. ..+.++....+|... .+. . .+ .. +..++.++.
T Consensus 185 ~S~~~~K~l~--~-g~gG~~~~~~~~l~~~~~~~~~~g~~~------~~~--~------~~------~g--~~~~~~~~~ 239 (377)
T 3ju7_A 185 YSFHATKPFG--I-GEGGLIYSKNEEDIQRIKRMGNFGFDT------NRE--C------TM------MG--FNCKMSEYA 239 (377)
T ss_dssp EECBTTSSSC--C-BSCEEEEESCHHHHHHHHHHTBTTBCT------TSC--B------CS------SC--CBCCCCHHH
T ss_pred EECCCCCcCC--C-CCcEEEEECCHHHHHHHHHHHhcCCCC------CCc--e------ee------cc--ccCCCCHHH
Confidence 66 569999 5 5555444 432 222333222223210 000 0 00 00 122333333
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH 457 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h 457 (603)
..+++ .+++ .++...++.+.+.+++.+.|.++..
T Consensus 240 aa~~~-----------------------------------------~~l~-----~l~~~~~~~~~~~~~~~~~L~~~~~ 273 (377)
T 3ju7_A 240 AAIGI-----------------------------------------ATMK-----KWDDKLKERTRISEWYKQLLQSNGL 273 (377)
T ss_dssp HHHHH-----------------------------------------HHHH-----THHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHH-----------------------------------------HHHH-----HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 32222 1222 4667777888899999999987631
Q ss_pred CCCCCCceEEEeCCCCCCCCCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc--ccCccCCchhhhhhHHHHHhh
Q 007454 458 PNTEGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGS--LHHIWFSDKYQKEKDNVLEKT 534 (603)
Q Consensus 458 ~~~~g~plv~Iygp~~~~~rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~--~C~~~~~~~~~~~~~~~l~~~ 534 (603)
.. .+ + .+.......+ .+.+.+++. ...+.+.+.+.++||.++.++ .|+....-.. ...
T Consensus 274 ~~---~~-~---~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~-----~~~--- 334 (377)
T 3ju7_A 274 MK---KG-W---QLQKTEAVIQQFMPILCPEE----VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRN-----YKS--- 334 (377)
T ss_dssp TT---TT-C---BCCCCSCBCCSSEEEECCTT----SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTT-----SCB---
T ss_pred cc---cc-c---cCCCCCcceEEEEEEEeCCh----hhHHHHHHHHHHCCCceecccCCccccchhhhc-----CCC---
Confidence 00 11 1 1111111112 234554431 234556666778899999987 5664321110 000
Q ss_pred hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..|... .....+.||++++...|.+||+++++.|++++..
T Consensus 335 ~~~p~~---------~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 335 TDLTRT---------NKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp SCCHHH---------HHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred CCCHHH---------HHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 000000 0112359999999999999999999999887643
No 176
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.53 E-value=5e-13 Score=143.43 Aligned_cols=286 Identities=11% Similarity=0.064 Sum_probs=170.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEeccCc-hH--HHHHHHH---------------------------------HHcCCEEEEE
Q 007454 173 SAMKKRIMDFLNISENDYVYDYESE-AV--EAMIRTS---------------------------------EKRGARVMSA 216 (603)
Q Consensus 173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV--~~~~~~a---------------------------------~~~Ga~V~~~ 216 (603)
.+.|+.|++++++++++++++..+. ++ ..+.... +..|++++.+
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v 160 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISV 160 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEe
Confidence 4799999999999999999886553 33 1222222 2345566666
Q ss_pred eccCCccccCHHHHHHHHhhcCCCCCCeeEEE-EeCccccccccccHH---HH-HHH-HhCCcEEEEeccccC----CCC
Q 007454 217 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYL---WM-RIA-QENDWHILIDACALG----PKD 286 (603)
Q Consensus 217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~-~~~~Sn~TG~~~pl~---~i-~~a-~e~g~~vlvDAaq~~----~~~ 286 (603)
+++ +++ ++.++|++.|.. +++++|. .|..+|.||.++|.+ .+ ++| +++|+++++|.++.. +..
T Consensus 161 ~~~-~~g-~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~ 233 (427)
T 3ppl_A 161 PMN-EDG-PDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEF 233 (427)
T ss_dssp EEE-TTE-ECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred CCC-CCC-CCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCC
Confidence 665 344 899999999842 3577776 569999999999997 33 346 899999999998754 110
Q ss_pred CCCCCCC-------CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCc
Q 007454 287 MDSFGLS-------LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP 359 (603)
Q Consensus 287 m~~ldls-------~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~ 359 (603)
..++++. ..+.++++.|++|+++ +..++|+++.++++++.+.... +
T Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~r~G~~~~~~~l~~~~~~~~------------~-------------- 286 (427)
T 3ppl_A 234 PEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHA------------G-------------- 286 (427)
T ss_dssp CCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TTSSCEEEECCHHHHHHHHHHH------------H--------------
T ss_pred CCccchhhhhhccCCCCcEEEEechhhccC-cCccEEEEEcCHHHHHHHHHHh------------h--------------
Confidence 0122222 3457899999999955 3456787776655443332100 0
Q ss_pred ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHH-HHHHhcCHHHHH
Q 007454 360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGL-DQVDSLGLTMIS 438 (603)
Q Consensus 360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-d~~~~iGl~~i~ 438 (603)
......+.....++. ..+. ....+ +++.+ -.+.+.
T Consensus 287 ---------~~~~~~~~~~q~~~~------------~~l~----------------------~~~~~~~~~~~-~~~~~~ 322 (427)
T 3ppl_A 287 ---------IRGIGPNKVNQLAHA------------RYFG----------------------DAEGVRAVMRK-HAASLA 322 (427)
T ss_dssp ---------HHCSCCCHHHHHHHH------------HHHC----------------------SHHHHHHHHHH-HHHHHH
T ss_pred ---------cccCCCCHHHHHHHH------------HHHh----------------------ChhhHHHHHHH-HHHHHH
Confidence 000011111111111 0000 00011 11111 123334
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454 439 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW 518 (603)
Q Consensus 439 ~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~ 518 (603)
++...|.+.|.+.|..+. .+++..|. .+..+.+.+++. ....+.+++.++||.++.|+.|...
T Consensus 323 ~~~~~l~~~L~~~l~~~~--------~~~~~~p~----~g~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~~g~~~~~ 385 (427)
T 3ppl_A 323 PKFNKVLEILDSRLAEYG--------VAQWTVPA----GGYFISLDVVPG-----TASRVAELAKEAGIALTGAGSSYPL 385 (427)
T ss_dssp HHHHHHHHHHHHHHGGGT--------CCEECCCS----BSSCEEEECSTT-----CHHHHHHHHHHTTEECCCTTTTSGG
T ss_pred HHHHHHHHHHHHhcCCCC--------ceEEeCCC----ccEEEEEECCcc-----hHHHHHHHHHHCCCEEecCcCcCCC
Confidence 444455555555554431 24555552 466788888763 2345666677889999986554321
Q ss_pred CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
. .....+.||+|++.. +.+||+++++.|++++..-
T Consensus 386 ~------------------------------~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 386 R------------------------------QDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp G------------------------------CCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred C------------------------------CCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 0 011236999999877 9999999999999988764
No 177
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.52 E-value=3.3e-14 Score=151.57 Aligned_cols=182 Identities=11% Similarity=0.038 Sum_probs=119.5
Q ss_pred CCceeeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN- 184 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~-~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln- 184 (603)
..-.|||+.+.++.++.+.+++.+ .+... . .+.|+. ..-..+.|+.|+++++
T Consensus 35 ~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~----------------------~~~y~~--~~g~~~lr~~ia~~~~~ 88 (412)
T 1yaa_A 35 GIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--Y----------------------NHEYLG--ITGLPSLTSNAAKIIFG 88 (412)
T ss_dssp SSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--C----------------------CCCCCC--TTCCHHHHHHHHHHHHC
T ss_pred eeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--c----------------------ccCCCC--CCCcHHHHHHHHHHHhc
Confidence 445789999999999999999876 54310 0 000100 0112478888888883
Q ss_pred -----CCCCcEEE--eccC-chHHHH-----------------------HHHHHHcCCEEEEEec-cCCccccCHHHHHH
Q 007454 185 -----ISENDYVY--DYES-EAVEAM-----------------------IRTSEKRGARVMSAEF-SWPRLRINSEKLRK 232 (603)
Q Consensus 185 -----a~~~e~vf--~~es-~sV~~~-----------------------~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~ 232 (603)
++++++++ +... +++..+ ...++..|+++..++. +..+..++.++|++
T Consensus 89 ~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 168 (412)
T 1yaa_A 89 TQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLN 168 (412)
T ss_dssp TTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHH
T ss_pred CCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHH
Confidence 25778887 5322 122221 2234456888888887 42256789999999
Q ss_pred HHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCC-C-----CCCCC-CCCCCCC----
Q 007454 233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGP-K-----DMDSF-GLSLVRP---- 297 (603)
Q Consensus 233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~-~-----~m~~l-dls~~~~---- 297 (603)
.|... ++.+.+++++..+|.||.++|.+. +++|+++|+++++|.++..- . ...++ ++...+.
T Consensus 169 ~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
T 1yaa_A 169 AIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP 245 (412)
T ss_dssp HHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred HHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence 99752 124677888999999999999763 34689999999999986421 1 00122 2222233
Q ss_pred cEEEEcccccCCCCCCc--eEEEE
Q 007454 298 DFLICSFYQIFGENPSG--FGCLF 319 (603)
Q Consensus 298 Dflv~S~hK~fG~~P~G--~G~L~ 319 (603)
++++.|++|.|| |.| +|+++
T Consensus 246 ~i~~~s~sK~~~--~~GlriG~~~ 267 (412)
T 1yaa_A 246 VFVCQSFAKNAG--MYGERVGCFH 267 (412)
T ss_dssp EEEEEECTTTSC--CGGGCEEEEE
T ss_pred eEEEeccCCCCC--CcCCcceEEE
Confidence 588999999999 778 69988
No 178
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.51 E-value=5.8e-14 Score=152.46 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=119.8
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc-CC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI 185 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-na 185 (603)
.--+|+|+.+.+++.+.+.+++....... + ..+.......| ..+.|+.|++++ |.
T Consensus 55 ~~g~~~d~~~~~~v~~av~~a~~~~~~~~----~--------------~~~~~Y~~~~G------~~~lr~~ia~~l~g~ 110 (448)
T 3meb_A 55 GVGAYRDESGKPWILPAVKEAEAIISSDL----S--------------KYNKEYPPVAG------FPLFLEAAQFLMFGK 110 (448)
T ss_dssp SSCCCCCTTSCCCCCHHHHHHHHHHHHCT----T--------------TTCCSCCCTTC------CHHHHHHHHHHHHCT
T ss_pred ecccccCCCCCEechHHHHHHHHHHhhcc----c--------------CCCCCCCCCcc------hHHHHHHHHHHhcCC
Confidence 44589999999999999999854432000 0 01111111111 247888999888 87
Q ss_pred C-----CCcEEE--eccC-chHH-----------------------HHHHHHH----HcCCEEEEEec-cCC-ccccCHH
Q 007454 186 S-----ENDYVY--DYES-EAVE-----------------------AMIRTSE----KRGARVMSAEF-SWP-RLRINSE 228 (603)
Q Consensus 186 ~-----~~e~vf--~~es-~sV~-----------------------~~~~~a~----~~Ga~V~~~~~-~~~-~g~i~~~ 228 (603)
+ ++++++ +... +++. .....++ ..|+++..++. +.. ++.++.+
T Consensus 111 ~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e 190 (448)
T 3meb_A 111 DSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFS 190 (448)
T ss_dssp TCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHH
T ss_pred CccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHH
Confidence 7 688887 4321 1111 1123345 77999999988 533 4789999
Q ss_pred HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEecc-ccCCCCCCCCC-----CC---CC
Q 007454 229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDAC-ALGPKDMDSFG-----LS---LV 295 (603)
Q Consensus 229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAa-q~~~~~m~~ld-----ls---~~ 295 (603)
+|++.|... .+++.+++++..+|.||..+|.+. | ++|+++|+++++|.+ +.++. ..++ +. ..
T Consensus 191 ~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~ 265 (448)
T 3meb_A 191 NTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFAT--GSFEADAFAVRMFVDA 265 (448)
T ss_dssp HHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSS--SCHHHHTHHHHHHHHT
T ss_pred HHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccC--CCcccCchhHHHHhhc
Confidence 999999742 135889999999999999999863 3 368999999999987 43333 1211 11 12
Q ss_pred CCc-EEEEcccccCCCCCCc--eEEE
Q 007454 296 RPD-FLICSFYQIFGENPSG--FGCL 318 (603)
Q Consensus 296 ~~D-flv~S~hK~fG~~P~G--~G~L 318 (603)
+.+ +++.|++|.|| +.| +|++
T Consensus 266 ~~~~i~~~S~SK~~g--~~G~RiG~l 289 (448)
T 3meb_A 266 GVEVLVAQSFSKNFG--LYGERIGCL 289 (448)
T ss_dssp TCCEEEEEECTTTSC--CGGGCCEEE
T ss_pred CCcEEEEecccccCC--Cccccceee
Confidence 334 67899999999 668 7887
No 179
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.50 E-value=1.5e-12 Score=141.39 Aligned_cols=275 Identities=14% Similarity=0.082 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHcC-CCCCcEEEecc-CchHHHHHHHHH----Hc----------CCEEEEEeccCC------------
Q 007454 170 GLESAMKKRIMDFLN-ISENDYVYDYE-SEAVEAMIRTSE----KR----------GARVMSAEFSWP------------ 221 (603)
Q Consensus 170 ~~~~~aR~~Ia~~ln-a~~~e~vf~~e-s~sV~~~~~~a~----~~----------Ga~V~~~~~~~~------------ 221 (603)
+...+.+++|+++++ ..+++++|... ++++...+..++ ++ |.+|......+.
T Consensus 101 ~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~ 180 (449)
T 2cjg_A 101 VAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNT 180 (449)
T ss_dssp HHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCS
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCC
Confidence 345678888999998 56678887753 345555554433 11 667666542211
Q ss_pred ---------------------c--c---------ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH
Q 007454 222 ---------------------R--L---------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM 265 (603)
Q Consensus 222 ---------------------~--g---------~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i 265 (603)
+ . .++.++|++.|... .+++++|.+...+|+||.+.| ++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l 257 (449)
T 2cjg_A 181 KPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAM 257 (449)
T ss_dssp CHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHH
T ss_pred chhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHH
Confidence 0 0 01223488888531 136899999889999998777 7755
Q ss_pred -HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCC-Cceecc
Q 007454 266 -RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLL 340 (603)
Q Consensus 266 -~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~ 340 (603)
++|+++|+++++|.+|. ++.. +..++.....+|++++| |.| | +|++++++++++.|.+.+.+ +.
T Consensus 258 ~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l---~--iG~~~~~~~~~~~l~~~~~~~~~---- 326 (449)
T 2cjg_A 258 RELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFG--KKT---Q--VCGVMAGRRVDEVADNVFAVPSR---- 326 (449)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGG---S--SEEEEECGGGGGSTTCTTTSTTS----
T ss_pred HHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEec--Ccc---c--EEEEEECHHHhhhhhhcccCCcc----
Confidence 47999999999999987 4331 01112223478999877 987 3 79999999887666542221 10
Q ss_pred ccccccccccccCCCCCCcccCcccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCC
Q 007454 341 PAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGG 418 (603)
Q Consensus 341 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 418 (603)
..+| .|..+.++..
T Consensus 327 -----------------------------~~~t~~~n~~~~~aa~----------------------------------- 342 (449)
T 2cjg_A 327 -----------------------------LNSTWGGNLTDMVRAR----------------------------------- 342 (449)
T ss_dssp -----------------------------SCCSSSSCHHHHHHHH-----------------------------------
T ss_pred -----------------------------cccCCCCCHHHHHHHH-----------------------------------
Confidence 0111 2333332221
Q ss_pred chhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce-EEEeCCCCCCCCCCEEEEEEccCCCCccCHHH
Q 007454 419 SEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL-VKIYGPKIRFDRGPALAFNVFDWKREKIEPVL 497 (603)
Q Consensus 419 ~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl-v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~ 497 (603)
++++.+.+ +.+.++++.+.++|.++|.++.. +.|. +... ...|.++.|.+.+.. ....+
T Consensus 343 -----aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~~~~-----~~~g~~~~~~~~~~~---~~~~~ 402 (449)
T 2cjg_A 343 -----RILEVIEA---EGLFERAVQHGKYLRARLDELAA----DFPAVVLDP-----RGRGLMCAFSLPTTA---DRDEL 402 (449)
T ss_dssp -----HHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHH----HSTTTSEEE-----EEETTEEEEECSSHH---HHHHH
T ss_pred -----HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh----hCCCceeeE-----eeccEEEEEEECChH---HHHHH
Confidence 46776654 34567888899999999987620 0121 2111 124778888775410 11234
Q ss_pred HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 007454 498 VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 577 (603)
Q Consensus 498 V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l 577 (603)
+.+|+ ++||.++.| + .+.||+|+++.+|.+||+++++.|
T Consensus 403 ~~~l~-~~Gv~v~~~-------------------------------------g---~~~iRi~~~~~~t~e~i~~~l~~l 441 (449)
T 2cjg_A 403 IRQLW-QRAVIVLPA-------------------------------------G---ADTVRFRPPLTVSTAEIDAAIAAV 441 (449)
T ss_dssp HHHHH-HTTEECEEE-------------------------------------T---TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHH-HCCeEEecC-------------------------------------C---CCEEEEECCCCCCHHHHHHHHHHH
Confidence 44555 578887643 0 258999999999999999999999
Q ss_pred HHHHhh
Q 007454 578 AQFLDA 583 (603)
Q Consensus 578 ~~~l~~ 583 (603)
+++++.
T Consensus 442 ~~~l~~ 447 (449)
T 2cjg_A 442 RSALPV 447 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 180
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.48 E-value=1.5e-12 Score=140.43 Aligned_cols=138 Identities=9% Similarity=0.052 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEec-------------------------cCchH-HHHHHHHHHcCCEEEEEeccCCc
Q 007454 169 SGLESAMKKRIMDFLNISENDYVYDY-------------------------ESEAV-EAMIRTSEKRGARVMSAEFSWPR 222 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~lna~~~e~vf~~-------------------------es~sV-~~~~~~a~~~Ga~V~~~~~~~~~ 222 (603)
....++.+++++++.|.+ +.++.. .+... ..+...+++.|+++..++.+
T Consensus 80 ~p~~~~l~~~la~~~g~~--~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--- 154 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAP--AAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD--- 154 (414)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred ChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC---
Confidence 345678889999999862 333321 11111 11222345578888888764
Q ss_pred cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454 223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI 301 (603)
Q Consensus 223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv 301 (603)
+.++|+++|.. +|++|.+...+|.||.+.|++.+ ++|+++|+++++|.++..|....++ .+++|+++
T Consensus 155 ---d~~~l~~ai~~------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~---~~g~div~ 222 (414)
T 3ndn_A 155 ---DLSQWERALSV------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF---PLGVDVVV 222 (414)
T ss_dssp ---CHHHHHHHTSS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG---GGTCSEEE
T ss_pred ---CHHHHHHhcCC------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch---hcCCCeEe
Confidence 67899988863 68999999999999999999966 5899999999999998876411233 46789999
Q ss_pred EcccccCCCCCCc---eEEEEEeCCCC
Q 007454 302 CSFYQIFGENPSG---FGCLFVKKSTV 325 (603)
Q Consensus 302 ~S~hK~fG~~P~G---~G~L~vkk~~~ 325 (603)
.|++|+|| +.| .|+++.+++.+
T Consensus 223 ~S~sK~l~--~~G~~~~G~vv~~~~~~ 247 (414)
T 3ndn_A 223 YSGTKHID--GQGRVLGGAILGDREYI 247 (414)
T ss_dssp EETTTTTT--CSSCCCCEEEEECHHHH
T ss_pred ccCCcccc--CCCCceEEEEEECHHHH
Confidence 99999999 557 68888876543
No 181
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.47 E-value=1.3e-12 Score=140.26 Aligned_cols=323 Identities=12% Similarity=0.062 Sum_probs=193.2
Q ss_pred CCceeeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~t------l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|||+++.. ..++.+++++.+.+... .+.+. +. ......+.+++|+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--------------------~~~~~----~~-~~~~~~~l~~~la 95 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL--------------------DHLFS----EM-LSRPVVDLATRLA 95 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------CCCCT----TC-CCHHHHHHHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC--------------------ccccc----cc-CCHHHHHHHHHHH
Confidence 457899995432 23788998877543210 00000 00 1234567788899
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEeccCC-------------------------------c----
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEFSWP-------------------------------R---- 222 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~~~~-------------------------------~---- 222 (603)
+++++++++++|+.. ++++...+..+. ..+.+|......++ .
T Consensus 96 ~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (433)
T 1zod_A 96 NITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRP 175 (433)
T ss_dssp HHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSC
T ss_pred HhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCccccc
Confidence 999988888888754 345655555443 22345554332110 0
Q ss_pred ---------cccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC-
Q 007454 223 ---------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD- 286 (603)
Q Consensus 223 ---------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~- 286 (603)
+.++.++|++.|.... .+++++|.+...+|.||.+.| ++.+ ++|+++|+++++|.++. .+..
T Consensus 176 ~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g 253 (433)
T 1zod_A 176 RFERNGAYDYLAELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 253 (433)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHC--CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ccCCchhhhHHHHHHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc
Confidence 0135888998886310 125788888777888998877 8755 58999999999999887 4431
Q ss_pred -CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccc
Q 007454 287 -MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 365 (603)
Q Consensus 287 -m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 365 (603)
+..++.....+|++++| |.||. +..+|++++++++++.+.+...
T Consensus 254 ~~~~~~~~~~~~di~s~s--K~~~~-G~~ig~~~~~~~~~~~~~~~~~-------------------------------- 298 (433)
T 1zod_A 254 TMFACQRDGVTPDILTLS--KTLGA-GLPLAAIVTSAAIEERAHELGY-------------------------------- 298 (433)
T ss_dssp SSSTHHHHTCCCSEEEEC--HHHHT-TSSCEEEEECHHHHHHHHHTTC--------------------------------
T ss_pred hHhHHhhcCCCCCEEEec--ccccC-CCCeeEEEEhHHHHHhhccCCC--------------------------------
Confidence 11122223568988766 98883 3458999998876654432100
Q ss_pred ccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHH
Q 007454 366 KQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC 443 (603)
Q Consensus 366 ~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~ 443 (603)
...+| .|..+.++.. ++++.+.+- ...++++.
T Consensus 299 ---~~~~t~~~~~~~~~a~~----------------------------------------aal~~~~~~---~~~~~~~~ 332 (433)
T 1zod_A 299 ---LFYTTHVSDPLPAAVGL----------------------------------------RVLDVVQRD---GLVARANV 332 (433)
T ss_dssp ---CCCCTTTTCHHHHHHHH----------------------------------------HHHHHHHHT---THHHHHHH
T ss_pred ---CCCCCCCcCHHHHHHHH----------------------------------------HHHHHHHhC---CHHHHHHH
Confidence 00112 1333332221 477766542 34567788
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC--C---CccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454 444 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--R---EKIEPVLVQKLADRENISLSYGSLHHIW 518 (603)
Q Consensus 444 L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--g---~~v~~~~V~~Lad~~gI~lr~G~~C~~~ 518 (603)
+.++|.++|.++.. +.|.+..+. ..|.++.+.+.+.. + ......+..+|. ++||.++.|...
T Consensus 333 ~~~~l~~~l~~l~~----~~~~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--- 399 (433)
T 1zod_A 333 MGDRLRRGLLDLME----RFDCIGDVR-----GRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLP--- 399 (433)
T ss_dssp HHHHHHHHHHHHHH----HCTTEEEEE-----EETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCT---
T ss_pred HHHHHHHHHHHHHH----hCCCeEEEE-----EEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCC---
Confidence 88888888877520 012232221 24678888876411 0 011223344444 679988755210
Q ss_pred CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+ ..+.||+|+++..|.+||+++++.|++++++
T Consensus 400 -------------------------------~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 400 -------------------------------G--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp -------------------------------T--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------C--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 0 1258999999999999999999999988753
No 182
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.47 E-value=3e-13 Score=143.42 Aligned_cols=182 Identities=9% Similarity=0.006 Sum_probs=120.3
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS 186 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~ 186 (603)
.--+|+|+.+.+++.+.+.+++....... .+.......| ..+.|+.|+++++..
T Consensus 34 ~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--------------------~~~~Y~~~~g------~~~lr~~ia~~~~~~ 87 (401)
T 7aat_A 34 GVGAYRDDNGKPYVLNCVRKAEAMIAAKK--------------------MDKEYLPIAG------LADFTRASAELALGE 87 (401)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHTT--------------------CCCCCCCTTC------CHHHHHHHHHHHHCT
T ss_pred eeeeEECCCCCEechHHHHHHHHHhcccc--------------------cccCCCCCCC------CHHHHHHHHHHhcCC
Confidence 44679999999999888888766532110 1111111111 246888888888754
Q ss_pred ------CCcEEE--eccC-chHHHH------------------------HHHHHHcCCEEEEEeccC-CccccCHHHHHH
Q 007454 187 ------ENDYVY--DYES-EAVEAM------------------------IRTSEKRGARVMSAEFSW-PRLRINSEKLRK 232 (603)
Q Consensus 187 ------~~e~vf--~~es-~sV~~~------------------------~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~ 232 (603)
++++++ +... +++..+ ...++..|+++..++++. .++.++.++|++
T Consensus 88 ~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 167 (401)
T 7aat_A 88 NSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAME 167 (401)
T ss_dssp TCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHH
T ss_pred CccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHH
Confidence 788866 4321 122211 223455688888887642 257889998888
Q ss_pred HHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEecc-ccCCCCCCCC-----CC----CCCCCc
Q 007454 233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDAC-ALGPKDMDSF-----GL----SLVRPD 298 (603)
Q Consensus 233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAa-q~~~~~m~~l-----dl----s~~~~D 298 (603)
.|.. .++++++++++..+|.||..++.+. + ++|+++|+++++|.+ +.... ... .+ ....-.
T Consensus 168 ~l~~---~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~ 242 (401)
T 7aat_A 168 DISK---IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFAS--GDINRDAWALRHFIEQGIDV 242 (401)
T ss_dssp HHTT---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCC
T ss_pred HHHh---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccC--CCccccHHHHHHHHhcCCcE
Confidence 8863 2347899999999999999999753 2 468999999999987 33332 111 01 223466
Q ss_pred EEEEcccccCCCCCCc--eEEEEEe
Q 007454 299 FLICSFYQIFGENPSG--FGCLFVK 321 (603)
Q Consensus 299 flv~S~hK~fG~~P~G--~G~L~vk 321 (603)
+++.|++|.|| +.| +|+|++.
T Consensus 243 i~~~S~sK~~~--~~G~RiG~l~~~ 265 (401)
T 7aat_A 243 VLSQSYAKNMG--LYGERAGAFTVI 265 (401)
T ss_dssp EEEEECTTTSC--CGGGCEEEEEEE
T ss_pred EEEecCCcccc--cccCceEEEEEE
Confidence 89999999999 668 8999974
No 183
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.47 E-value=9.4e-12 Score=134.73 Aligned_cols=328 Identities=11% Similarity=0.082 Sum_probs=192.9
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||..+. |.-++.+++++.+.+... .+ .+. .-..+...+.+++++
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~--------------------~~-~~~----~~~~~~~~~la~~l~ 101 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTL--------------------SY-FPM----SQSHEPAIKLAEKLN 101 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTC--------------------CC-CCT----TSEEHHHHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc--------------------CC-ccc----ccCCHHHHHHHHHHH
Confidence 46779998766 234788999877643211 00 000 012245568888999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHH-----H---cCCEEEEEeccCCc---------c----------------cc-
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSE-----K---RGARVMSAEFSWPR---------L----------------RI- 225 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~-----~---~Ga~V~~~~~~~~~---------g----------------~i- 225 (603)
++++.+.+ ++|+.. ++++...+..+. . .|.+|...+..+.. + .+
T Consensus 102 ~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (452)
T 3n5m_A 102 EWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVT 180 (452)
T ss_dssp HHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEEC
T ss_pred HhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeC
Confidence 99987766 766653 356666566655 2 45566654322110 0 00
Q ss_pred ----------C---------HHHHHHHHhhcCCCCCCeeEEEEeCc-ccccccccc----HHHH-HHHHhCCcEEEEecc
Q 007454 226 ----------N---------SEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYP----YLWM-RIAQENDWHILIDAC 280 (603)
Q Consensus 226 ----------~---------~~~L~~~l~~~~~~~~~t~Lv~~~~~-Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAa 280 (603)
+ .++|++.|.... .+++++|.+... +| ||.+.| ++.+ ++|+++|+++++|-+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv 257 (452)
T 3n5m_A 181 PPDCYRMPGIERENIYDVECVKEVDRVMTWEL--SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEV 257 (452)
T ss_dssp CCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC--GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred CCccccCccCCchhhHHHHHHHHHHHHHHhcC--CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1 789999987210 125788888877 89 999998 8755 589999999999998
Q ss_pred cc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCC
Q 007454 281 AL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET 357 (603)
Q Consensus 281 q~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~ 357 (603)
+. .+.. +..++.....+|++++| |.+|..+..+|++++++++++.+.+....+..
T Consensus 258 ~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~-------------------- 315 (452)
T 3n5m_A 258 ICGFGRTGKAFGFMNYDVKPDIITMA--KGITSAYLPLSATAVKREIYEAFKGKGEYEFF-------------------- 315 (452)
T ss_dssp TTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSC--------------------
T ss_pred hhCCCcccccchhhhcCCCCCEEeec--ccccCCCcceEEEEECHHHHHHHhhccCCCCc--------------------
Confidence 76 2221 11233334568998877 87763125689999999887666431000100
Q ss_pred CcccCcccccccccCCC--ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH
Q 007454 358 EPEQTSKSKQEKVAATN--TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT 435 (603)
Q Consensus 358 e~~~~~~~~~~~e~GT~--n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~ 435 (603)
+..+|. |..+.++. + ++++.++. +
T Consensus 316 -----------~~~~t~~~~~~~~aaa---------------~-------------------------aal~~~~~---~ 341 (452)
T 3n5m_A 316 -----------RHINTFGGNPAACALA---------------L-------------------------KNLEIIEN---E 341 (452)
T ss_dssp -----------CCCCSSTTCHHHHHHH---------------H-------------------------HHHHHHHH---T
T ss_pred -----------cccCCCCCCHHHHHHH---------------H-------------------------HHHHHHHh---c
Confidence 011222 22222111 1 46665543 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC--CCccCH---HHHHHHHhcCCcEEe
Q 007454 436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--REKIEP---VLVQKLADRENISLS 510 (603)
Q Consensus 436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--g~~v~~---~~V~~Lad~~gI~lr 510 (603)
.+.++++.+.+++.+.|.++.. +.|.+... ...|..+.|.+.+.. .+.++. ..+.+.+.++||.++
T Consensus 342 ~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~-----~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 412 (452)
T 3n5m_A 342 NLIERSAQMGSLLLEQLKEEIG----EHPLVGDI-----RGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIG 412 (452)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT----TCTTEEEE-----EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECE
T ss_pred cHHHHHHHHHHHHHHHHHHHHh----cCCCeEEE-----EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEe
Confidence 3455667777777777766411 12223222 124667777764311 111111 124444456799988
Q ss_pred eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454 511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD 582 (603)
Q Consensus 511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~ 582 (603)
.+..+.. ...+.||+++++..|.|||+++++.|++++.
T Consensus 413 ~~~~~~~----------------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 413 RNGMTTA----------------------------------GYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp ECTTSST----------------------------------TCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred ecCcccC----------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 7644321 1126899999999999999999999998875
No 184
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.47 E-value=1.9e-12 Score=138.96 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=119.5
Q ss_pred CCceeeecCCC---CC---CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI---GL---FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~---tl---~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||+.+. .+ -++.+++++.+.+... . + ..+. . -......+.+++++
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---------~--------~-~~~~-~-----~~~~~~~~l~~~la 82 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL---------P--------F-VHGS-Q-----FSSDVLEEYAGRLA 82 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC---------C--------C-CCTT-T-----CEEHHHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhc---------c--------c-cccc-c-----cCCHHHHHHHHHHH
Confidence 45679999874 22 3888888876533211 0 0 0000 0 01244567888999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccCC--------------------------c---
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSWP--------------------------R--- 222 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~~--------------------------~--- 222 (603)
+++++++++++|+.. ++++...+..+.+ .|.+|...+..++ .
T Consensus 83 ~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (430)
T 3i4j_A 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPK 162 (430)
T ss_dssp HHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCE
T ss_pred HhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceE
Confidence 999998889988764 3455555555542 2445554322110 0
Q ss_pred ---------cccCHHHHHHHHhhcCCCCCCeeEEEEeCccc-ccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC
Q 007454 223 ---------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSR-MTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD 286 (603)
Q Consensus 223 ---------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn-~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~ 286 (603)
+..+.++|++.|.... .+++.+|.+...++ .+|.+.| ++.+ ++|+++|+++++|-++. .+..
T Consensus 163 ~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~ 240 (430)
T 3i4j_A 163 LPKPDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC 240 (430)
T ss_dssp ECCCCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cCCCcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 1124478888886310 12578888877888 9999888 8755 58999999999998865 3221
Q ss_pred --CCCCCCC-CCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcC
Q 007454 287 --MDSFGLS-LVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILV 329 (603)
Q Consensus 287 --m~~ldls-~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~ 329 (603)
+..++.- ...+|.+++| |.|| + | +|++++++++++.+.
T Consensus 241 g~~~~~~~~~~~~~di~t~s--K~l~--~-G~~r~G~~~~~~~i~~~~~ 284 (430)
T 3i4j_A 241 GSPLALSRWSGVTPDIAVLG--KGLA--A-GYAPLAGLLAAPQVYETVM 284 (430)
T ss_dssp SSSSGGGGTTTCCCSEEEEC--GGGT--T-TSSCCEEEEECHHHHHHHH
T ss_pred cchhhhhhhcCCCCcEEEEc--cccc--C-CccccEEEEECHHHHHHHh
Confidence 1122222 3468998877 9988 3 6 799999887765554
No 185
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.46 E-value=3.2e-12 Score=141.02 Aligned_cols=293 Identities=11% Similarity=0.066 Sum_probs=173.6
Q ss_pred HHHHHHHHHcC------CCCCcEEEeccCc-hHH----------------------HHHHHHHHcCCEEEEEeccCC-cc
Q 007454 174 AMKKRIMDFLN------ISENDYVYDYESE-AVE----------------------AMIRTSEKRGARVMSAEFSWP-RL 223 (603)
Q Consensus 174 ~aR~~Ia~~ln------a~~~e~vf~~es~-sV~----------------------~~~~~a~~~Ga~V~~~~~~~~-~g 223 (603)
+.|+.|+++++ +++++++++.... ++. .....++..|+++..+++++. +.
T Consensus 138 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 217 (500)
T 3tcm_A 138 GLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGW 217 (500)
T ss_dssp HHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTS
T ss_pred HHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCC
Confidence 56777777764 6788887754321 221 123344566888888887743 23
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCC---CCCCCCCC---
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPK---DMDSFGLS--- 293 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~---~m~~ldls--- 293 (603)
.++.++|++.|...+....+++++++...+|.||.++|.+.+ ++|+++|+++++|.+..... .-...++.
T Consensus 218 ~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~ 297 (500)
T 3tcm_A 218 GLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIV 297 (500)
T ss_dssp BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHH
Confidence 789999999997522222368899999999999999998633 34899999999998754311 00011111
Q ss_pred ------CCCCc-EEEEcccccC-CCCCCc--eEEEEE---eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcc
Q 007454 294 ------LVRPD-FLICSFYQIF-GENPSG--FGCLFV---KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE 360 (603)
Q Consensus 294 ------~~~~D-flv~S~hK~f-G~~P~G--~G~L~v---kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~ 360 (603)
.-+++ +++.|++|.| | +.| +|++++ ++++++.+....
T Consensus 298 ~~~~~~~~~~~~i~~~S~SK~~~g--~~G~R~G~~~~~~~~~~~~~~l~~~~---------------------------- 347 (500)
T 3tcm_A 298 RSLGYGEEDLPLVSYQSVSKGYYG--ECGKRGGYFEITGFSAPVREQIYKIA---------------------------- 347 (500)
T ss_dssp HHTTCSSSCCCEEEEEESSSTTTC--CGGGCCEEEEEESCCTTHHHHHHHHH----------------------------
T ss_pred HHhccccCCeEEEEEecCCccCCC--CCccceEEEEEeCCCHHHHHHHHHHH----------------------------
Confidence 11233 4556999988 7 446 588877 444433222100
Q ss_pred cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHH
Q 007454 361 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR 440 (603)
Q Consensus 361 ~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r 440 (603)
-...+++..+.+++.. .+. ++.... ...+...+ .++.+.++
T Consensus 348 --------~~~~~~~~~~q~~~~~------------~l~-------------~~~~~~-----~~~~~~~~-~~~~~~~~ 388 (500)
T 3tcm_A 348 --------SVNLCSNITGQILASL------------VMN-------------PPKASD-----ESYASYKA-EKDGILAS 388 (500)
T ss_dssp --------HTTCCCCHHHHHHHHH------------HHS-------------CCCSSS-----THHHHHHH-HHHHHHHH
T ss_pred --------hcccCCCHHHHHHHHH------------Hhc-------------Cccccc-----hhHHHHHH-HHHHHHHH
Confidence 0122344444443321 000 000000 01111111 14667778
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE-EEccCCCC-------ccCHH--HHHHHHhcCCcEEe
Q 007454 441 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF-NVFDWKRE-------KIEPV--LVQKLADRENISLS 510 (603)
Q Consensus 441 ~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF-nv~~~~g~-------~v~~~--~V~~Lad~~gI~lr 510 (603)
++..+++|.+.|.+++ .+.++.| .++.+.| .+....+. -+.+. .+.++++++||.+.
T Consensus 389 l~~~~~~l~~~L~~~~--------g~~~~~~-----~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~ 455 (500)
T 3tcm_A 389 LARRAKALEHAFNKLE--------GITCNEA-----EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVV 455 (500)
T ss_dssp HHHHHHHHHHHHHTST--------TEECCCC-----CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHHHhcCC--------CcEEecC-----CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEE
Confidence 8888999999998762 2666654 3444444 22211000 01111 24678888999999
Q ss_pred eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.|..|..+ .+.+.+|+|++ ++.+||+++++.|++++.+
T Consensus 456 pg~~f~~~---------------------------------~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 456 PGSGFGQV---------------------------------PGTWHFRCTIL--PQEDKIPAVISRFTVFHEA 493 (500)
T ss_dssp ESTTTCCC---------------------------------TTCCBEEEESC--SCTTTHHHHHHHHHHHHHH
T ss_pred eCcccCCC---------------------------------CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 99777531 11257999999 8999999999999998754
No 186
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.46 E-value=1.4e-11 Score=132.63 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=121.7
Q ss_pred CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||+++... .++.+++++.+.+... .+.+ +..-..+..++.+++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--------------------~~~~----~~~~~~~~~~~l~~~la 96 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP--------------------AGAT----ILSASNAPAVTLAERLL 96 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC--------------------SCSC----SSSSEEHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc--------------------cCcc----ccccCCHHHHHHHHHHH
Confidence 4577999987766 6788888876543211 0000 00012356678999999
Q ss_pred HHcCCCC-CcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccC----------------------------------Cc
Q 007454 181 DFLNISE-NDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSW----------------------------------PR 222 (603)
Q Consensus 181 ~~lna~~-~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~----------------------------------~~ 222 (603)
++++... ++++|... ++++...+..++. .+.+|...+..+ +.
T Consensus 97 ~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (439)
T 3dxv_A 97 ASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP 176 (439)
T ss_dssp HTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC
T ss_pred HhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc
Confidence 9998766 57777653 3455555555422 334554332111 00
Q ss_pred c-cc-----CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CC
Q 007454 223 L-RI-----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MD 288 (603)
Q Consensus 223 g-~i-----~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~ 288 (603)
. .. +.++|+++|.. ...+++++|.+...+|.+|.+.| ++.+ ++|+++|+++++|.++. .+.. +.
T Consensus 177 ~~~~~~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~ 254 (439)
T 3dxv_A 177 YRNDPTGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH 254 (439)
T ss_dssp BTTBTTSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS
T ss_pred ccccccHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 0 00 47889998841 11246888888888999999999 8865 58999999999999875 2110 11
Q ss_pred CCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 289 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 289 ~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
.++.....+|++++ -|.||. ...+|+++.++++++.+.+
T Consensus 255 ~~~~~~~~~di~s~--sK~~~~-G~riG~~~~~~~~~~~~~~ 293 (439)
T 3dxv_A 255 CFEHEGFVPDILVL--GKGLGG-GLPLSAVIAPAEILDCASA 293 (439)
T ss_dssp GGGGTTCCCSEEEE--CGGGGT-TSCCEEEEEEHHHHTSCSS
T ss_pred HHHhcCCCCCEEEE--cchhcC-CcceEEEEECHHHHhhhcC
Confidence 23333456898855 498882 2247999999877655543
No 187
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.45 E-value=8.2e-12 Score=136.80 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=133.2
Q ss_pred CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCC-CCCCCCC--
Q 007454 226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDS-FGLSLVR-- 296 (603)
Q Consensus 226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~-ldls~~~-- 296 (603)
+.++|+++|........++++|++..++|++|.+.| ++.+ ++|+++|+++++|.+|. ++.. .. +.+..++
T Consensus 241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~-g~~~~~~~~gv~ 319 (472)
T 1ohv_A 241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST-GKFWAHEHWGLD 319 (472)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSSSGGGGGCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCC-CCchhccccCCC
Confidence 467788888641100115889999888888999888 7755 48999999999999997 3441 11 3444444
Q ss_pred --CcEEEEccccc-CCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454 297 --PDFLICSFYQI-FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT 373 (603)
Q Consensus 297 --~Dflv~S~hK~-fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT 373 (603)
||++++| |. +| | |+ ++++.+. .+.+.. ..+|
T Consensus 320 ~~~Di~t~s--K~~l~----G-G~-~~~~~~~-~~~~~~-------------------------------------~~~T 353 (472)
T 1ohv_A 320 DPADVMTFS--KKMMT----G-GF-FHKEEFR-PNAPYR-------------------------------------IFNT 353 (472)
T ss_dssp SCCSEEEEC--GGGSS----E-EE-EECGGGS-CSSSSS-------------------------------------SCCS
T ss_pred CCCCEEEEc--ccccc----C-Cc-cCchhhc-cccccc-------------------------------------ccCc
Confidence 8999888 97 56 3 44 4443321 111110 1233
Q ss_pred --CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454 374 --NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA 451 (603)
Q Consensus 374 --~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~ 451 (603)
.|..+.++.. ++|+.+.+ +.+.++++.+.++|.++
T Consensus 354 ~~~~~~~~aaa~----------------------------------------aal~~~~~---~~~~~~~~~~~~~l~~~ 390 (472)
T 1ohv_A 354 WLGDPSKNLLLA----------------------------------------EVINIIKR---EDLLSNAAHAGKVLLTG 390 (472)
T ss_dssp SSSCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHH----------------------------------------HHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 2333333322 57776655 24567888999999999
Q ss_pred HhcC--CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454 452 LMKL--QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 529 (603)
Q Consensus 452 L~~L--~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~ 529 (603)
|.++ +++. .+.-. ...+.++.|.+.+. .....+..+|+ ++||.++.+
T Consensus 391 L~~l~~~~~~-----~v~~~-----~~~g~~~~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~----------------- 439 (472)
T 1ohv_A 391 LLDLQARYPQ-----FISRV-----RGRGTFCSFDTPDE---SIRNKLISIAR-NKGVMLGGC----------------- 439 (472)
T ss_dssp HHHHHHHCTT-----TCEEE-----EEETTEEEEECSSH---HHHHHHHHHHH-HTTEECEEE-----------------
T ss_pred HHHHHhhCCC-----cEEee-----cCCceEEEEEeCCh---hHHHHHHHHHH-HCCeEEecC-----------------
Confidence 9876 2221 12111 12477888876531 11122344444 468876531
Q ss_pred HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
+.++||+|+++.+|.+||+++++.|++++..
T Consensus 440 -----------------------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 440 -----------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp -----------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1258999999999999999999999988753
No 188
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.44 E-value=6.2e-12 Score=135.14 Aligned_cols=189 Identities=14% Similarity=0.102 Sum_probs=124.2
Q ss_pred CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||++++.. .++.+++++.+.+.... ..+. ......+.+++++
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----------------~~~~----------~~~~~~~l~~~la 105 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV-----------------LYGT----------PTALEVKFAKMLK 105 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS-----------------CCSS----------CCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc-----------------CCCC----------CCHHHHHHHHHHH
Confidence 5678999987642 48888888765332100 0000 1234456788899
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccCCc----------------------cc-----------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSWPR----------------------LR----------- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~~~----------------------g~----------- 224 (603)
++++ .+++++|... ++++...+..+.. .+.+|...+..+.. +.
T Consensus 106 ~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
T 3l44_A 106 EAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITV 184 (434)
T ss_dssp HHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEE
T ss_pred HhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEec
Confidence 9998 6778888753 4566666666554 45566654322110 00
Q ss_pred --cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC---CCCCCCCCCCC
Q 007454 225 --INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG---PKDMDSFGLSL 294 (603)
Q Consensus 225 --i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~---~~~m~~ldls~ 294 (603)
-+.++|+++|... .+++.+|.+...++.+|.+.| ++.+ ++|+++|+++++|.++.. ++ +..++...
T Consensus 185 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~-~~~~~~~~ 260 (434)
T 3l44_A 185 PFNNVETLKEALDKW---GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMY-GGAQDLLG 260 (434)
T ss_dssp CTTCHHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSS-SCHHHHHT
T ss_pred CcccHHHHHHHHHhC---CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccc-cHHHHHcC
Confidence 0788999988731 125788888888899999998 8866 589999999999999863 22 01122223
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
..+|++++| |.||. +..+|+++.++++++.+.+
T Consensus 261 ~~~di~t~s--K~~~~-G~~iG~~~~~~~i~~~~~~ 293 (434)
T 3l44_A 261 VTPDLTALG--KVIGG-GLPIGAYGGKKEIMEQVAP 293 (434)
T ss_dssp CCCSEEEEE--GGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred CCCCeeehh--hhhcC-CcCeeeEEEcHHHHHhhcc
Confidence 468988776 98874 5679999998887765553
No 189
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.42 E-value=8.1e-12 Score=133.96 Aligned_cols=189 Identities=15% Similarity=0.137 Sum_probs=123.2
Q ss_pred CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||+.+... -++.+++++.+.+... . +++. ......+.+++++
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----------~------~~~~----------~~~~~~~la~~l~ 102 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG-----------T------SFGA----------PCALENVLAEMVN 102 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC-----------S------CCSS----------CCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhC-----------C------CcCC----------CCHHHHHHHHHHH
Confidence 4678999987642 3888999877643211 0 0011 1244567888899
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccCCc-----------cc----------c-----------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSWPR-----------LR----------I----------- 225 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~~~-----------g~----------i----------- 225 (603)
++++ .+++++|... ++++...+..++. .+-+|...+..+.. +. +
T Consensus 103 ~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (427)
T 3fq8_A 103 DAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTT 181 (427)
T ss_dssp HHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEE
T ss_pred HhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeec
Confidence 9998 6778887754 3455555544432 33466654432210 00 1
Q ss_pred ---CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC---CCCCCCCCCCC
Q 007454 226 ---NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG---PKDMDSFGLSL 294 (603)
Q Consensus 226 ---~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~---~~~m~~ldls~ 294 (603)
+.++|+++|... ..++++|.+...+|.+|.+.| ++.+ ++|+++|+++++|.++.+ ++ +...+...
T Consensus 182 ~~~d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~-~~~~~~~~ 257 (427)
T 3fq8_A 182 PYNDLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY-GGVQEKFG 257 (427)
T ss_dssp ETTCHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT-THHHHHTT
T ss_pred CCCCHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc-chhhHhcC
Confidence 788999998752 136888888888899999999 8865 589999999999999872 21 01122233
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
..+|++++| |.||. -..+|+++.++++++.+.+
T Consensus 258 ~~~di~t~s--K~~~~-G~~~G~~~~~~~~~~~~~~ 290 (427)
T 3fq8_A 258 VTPDLTTLG--KIIGG-GLPVGAYGGKREIMQLVAP 290 (427)
T ss_dssp CCCSEEEEC--GGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred CCCChhhhh--hhhhC-CcceEEEEEcHHHHHhhcc
Confidence 468998887 99982 1229999998887765653
No 190
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.42 E-value=1.5e-13 Score=145.25 Aligned_cols=183 Identities=15% Similarity=0.098 Sum_probs=116.4
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc-CC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI 185 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-na 185 (603)
..-.|+|..+..+.++.+.+++.+.+... ..+.|+. .....+.|++|++++ +.
T Consensus 32 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------------------------~~~~y~~--~~g~~~lr~~la~~~~~~ 85 (394)
T 2ay1_A 32 GVGVYKDATGHTPIMRAVHAAEQRMLETE------------------------TTKTYAG--LSGEPEFQKAMGELILGD 85 (394)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHHC------------------------CCCCCCC--SSCCHHHHHHHHHHHHGG
T ss_pred ccceeeCCCCCccCcHHHHHHHHHhcCCc------------------------ccCCCCC--CCCcHHHHHHHHHHHhCC
Confidence 33467777777788888988876532100 0000100 001247888888887 55
Q ss_pred --CCCcEEE--eccC-chHHH-----------------------HHHHHHHcCCEEEEEeccC-CccccCHHHHHHHHhh
Q 007454 186 --SENDYVY--DYES-EAVEA-----------------------MIRTSEKRGARVMSAEFSW-PRLRINSEKLRKMVVS 236 (603)
Q Consensus 186 --~~~e~vf--~~es-~sV~~-----------------------~~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~ 236 (603)
++++++| +... +++.. ....++..|+++..++.+. .++.++.++|++.|..
T Consensus 86 ~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 165 (394)
T 2ay1_A 86 GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAA 165 (394)
T ss_dssp GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHT
T ss_pred CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHh
Confidence 6778877 4321 12222 2223344577777777641 2467899999999974
Q ss_pred cCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCCC-----CCCCC-CCCCCCc-EEEEccc
Q 007454 237 KGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPKD-----MDSFG-LSLVRPD-FLICSFY 305 (603)
Q Consensus 237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~~-----m~~ld-ls~~~~D-flv~S~h 305 (603)
. .+++.+++++..+|.||.++|.+. +++|+++|+++++|.++..... ..++. +...+.| +++.|++
T Consensus 166 ~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 242 (394)
T 2ay1_A 166 A---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS 242 (394)
T ss_dssp C---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred C---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence 2 124788999999999999999763 3468999999999999865320 01222 2223444 6688999
Q ss_pred ccCCCCCCce--EEEEE
Q 007454 306 QIFGENPSGF--GCLFV 320 (603)
Q Consensus 306 K~fG~~P~G~--G~L~v 320 (603)
|+|| +.|+ |++++
T Consensus 243 K~~~--~~G~riG~~~~ 257 (394)
T 2ay1_A 243 KNFG--IYRERTGCLLA 257 (394)
T ss_dssp TTTT--CGGGCEEEEEE
T ss_pred CCCc--CcCCccceEEE
Confidence 9999 6684 99998
No 191
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.41 E-value=1.9e-12 Score=137.82 Aligned_cols=184 Identities=8% Similarity=-0.114 Sum_probs=115.0
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc-CC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI 185 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-na 185 (603)
..-+|+|..+..+.++.+.+++.+.+.... ..+.|+. ..-..+.|+.|++++ +.
T Consensus 36 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-----------------------~~~~y~~--~~g~~~lr~~la~~~~~~ 90 (412)
T 1ajs_A 36 GVGAYRTDDCQPWVLPVVRKVEQRIANNSS-----------------------LNHEYLP--ILGLAEFRTCASRLALGD 90 (412)
T ss_dssp CSCCCCCTTSCCCCCHHHHHHHHHHHTCTT-----------------------CCCCCCC--TTCCHHHHHHHHHHHHCT
T ss_pred ccceecCCCCCccccHHHHHHHHHhhhChh-----------------------hccCCCC--CCCCHHHHHHHHHHHhcC
Confidence 445788888888888899888765431100 0000100 011246788888887 43
Q ss_pred -----CCCcEEE--eccC-chHHHH----------------------------HHHHHHcCCE-EEEEeccC-CccccCH
Q 007454 186 -----SENDYVY--DYES-EAVEAM----------------------------IRTSEKRGAR-VMSAEFSW-PRLRINS 227 (603)
Q Consensus 186 -----~~~e~vf--~~es-~sV~~~----------------------------~~~a~~~Ga~-V~~~~~~~-~~g~i~~ 227 (603)
+++++++ +... +++..+ ...++..|++ +..++.+. .+..++.
T Consensus 91 ~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 170 (412)
T 1ajs_A 91 DSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDL 170 (412)
T ss_dssp TCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECH
T ss_pred CCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCH
Confidence 5677776 4321 122221 2223345666 66666521 2456889
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc-CCCC-----CCCCC-CCCC-
Q 007454 228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL-GPKD-----MDSFG-LSLV- 295 (603)
Q Consensus 228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~-~~~~-----m~~ld-ls~~- 295 (603)
++|++.|... ++++.+++++..+|.||.++|.+. +++|+++|+++++|.+.. .+.+ +.++. +...
T Consensus 171 ~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
T 1ajs_A 171 QGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEG 247 (412)
T ss_dssp HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred HHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccC
Confidence 9999998742 235789999999999999999763 346889999999999843 3221 00121 2111
Q ss_pred CCcEEEEcccccCCCCCCc--eEEEEE
Q 007454 296 RPDFLICSFYQIFGENPSG--FGCLFV 320 (603)
Q Consensus 296 ~~Dflv~S~hK~fG~~P~G--~G~L~v 320 (603)
.-++++.|++|.|| |.| +|++++
T Consensus 248 ~~~i~~~s~sK~~~--~~G~riG~~~~ 272 (412)
T 1ajs_A 248 FELFCAQSFSKNFG--LYNERVGNLTV 272 (412)
T ss_dssp CCEEEEEECTTTSC--CGGGCEEEEEE
T ss_pred CcEEEEEecccccC--CCCcceEEEEE
Confidence 22388999999999 778 799998
No 192
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.40 E-value=5.8e-12 Score=134.28 Aligned_cols=275 Identities=11% Similarity=0.030 Sum_probs=168.4
Q ss_pred HHHHHHHHHHcCC-----CC-CcEEEeccC-chHHHHHHHHHHcCC----EEEEEeccCCccccCHHHHHHHH-------
Q 007454 173 SAMKKRIMDFLNI-----SE-NDYVYDYES-EAVEAMIRTSEKRGA----RVMSAEFSWPRLRINSEKLRKMV------- 234 (603)
Q Consensus 173 ~~aR~~Ia~~lna-----~~-~e~vf~~es-~sV~~~~~~a~~~Ga----~V~~~~~~~~~g~i~~~~L~~~l------- 234 (603)
.+.|+.|+++++. ++ ++++++..+ +++..++....+.|. +|......|+.. ..+-+..
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~----~~~~~~~g~~~~~~ 146 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTY----VEETTYVRSGMYKW 146 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHH----HHHHHTTCBTTEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhH----HHHHHHcCCeEEEe
Confidence 5789999999883 34 688887654 355555565566787 776665554321 0000000
Q ss_pred --hhcCCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454 235 --VSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP 312 (603)
Q Consensus 235 --~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P 312 (603)
..+.-..++++++.++..+|.||.+++ ++++.++.++++|++|.++..++ ..++.. ..+.++++.|++|.|| +
T Consensus 147 ~~d~~~l~~~~~k~v~l~~p~NPtG~~~~-~l~~~~~~~~~~ii~De~y~~~~-~~~l~~-~~~~~i~~~S~SK~~g--~ 221 (391)
T 3bwn_A 147 EGDAWGFDKKGPYIELVTSPNNPDGTIRE-TVVNRPDDDEAKVIHDFAYYWPH-YTPITR-RQDHDIMLFTFSKITG--H 221 (391)
T ss_dssp EEESTTCCCCSCEEEEEESSCTTTCCCCC-CCC-----CCCEEEEECTTCSTT-TSCCCC-CBCCSEEEEEHHHHHS--C
T ss_pred cCCHHHcCCCCCEEEEECCCCCCCchhHH-HHHHHhhcCCCEEEEeCCCCCCC-CCcccc-CCCCeEEEEechhhcC--C
Confidence 000001246899999999999999997 33232233449999999887543 124543 4567899999999999 6
Q ss_pred Cce--EEEEE-eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCc
Q 007454 313 SGF--GCLFV-KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 389 (603)
Q Consensus 313 ~G~--G~L~v-kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~ 389 (603)
.|+ |.+++ ++++++.+.... . ....+.+..+..++.
T Consensus 222 ~GlRiG~~~~~~~~l~~~l~~~~--------------------------------~---~~~~~~~~~~q~a~~------ 260 (391)
T 3bwn_A 222 AGSRIGWALVKDKEVAKKMVEYI--------------------------------I---VNSIGVSKESQVRTA------ 260 (391)
T ss_dssp GGGCEEEEEECCHHHHHHHHHHH--------------------------------H---HHHSSCCHHHHHHHH------
T ss_pred CccceEEEEecCHHHHHHHHHHh--------------------------------c---ccccCCCHHHHHHHH------
Confidence 685 99998 444433232100 0 011223333322222
Q ss_pred cccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH---------hcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454 390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD---------SLGLTMISRRGRCLINWLVNALMKLQHPNT 460 (603)
Q Consensus 390 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~---------~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~ 460 (603)
.+++... .-.++.+.++.+..++++.+.|.+++
T Consensus 261 ----------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---- 302 (391)
T 3bwn_A 261 ----------------------------------KILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESD---- 302 (391)
T ss_dssp ----------------------------------HHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCS----
T ss_pred ----------------------------------HHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 2333221 12367778888899999999998752
Q ss_pred CCCceEEEeCCCCC---------CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454 461 EGNALVKIYGPKIR---------FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL 531 (603)
Q Consensus 461 ~g~plv~Iygp~~~---------~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l 531 (603)
.+++++|... ...|..+-+.+++ ++ .+..+++++||.++.|..|..
T Consensus 303 ----~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~--~~-----~~~~~l~~~gV~v~pg~~fg~-------------- 357 (391)
T 3bwn_A 303 ----AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE--ET-----DLVSELRRHKVMSRAGERCGS-------------- 357 (391)
T ss_dssp ----SEECCCCCCEEETTTTEEECCCCSEEEEEESS--SC-----CHHHHHHHTTEECEEGGGGTC--------------
T ss_pred ----CcccccCCccccccccccCCCcceEEEecCCc--HH-----HHHHHHHHCCEEEccCCCCCC--------------
Confidence 2666655311 1223356677764 22 366777889999999877621
Q ss_pred HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|++ ++.++++++++.|++++.+
T Consensus 358 ---------------------~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 358 ---------------------DKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp ---------------------CTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred ---------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 1258999999 4899999999999887643
No 193
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.40 E-value=3.1e-12 Score=135.06 Aligned_cols=182 Identities=15% Similarity=0.083 Sum_probs=120.7
Q ss_pred CceeeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC-
Q 007454 108 NHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI- 185 (603)
Q Consensus 108 ~~vYLDyaa~tl~~~~v~~a~~~-~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna- 185 (603)
--+|+|+.+.++.++.+++++.+ .+..... + .+..+ .| ..+.|+.|+++++.
T Consensus 33 ~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~-----------~----~y~~~-----~g------~~~lr~~la~~~~~~ 86 (397)
T 3fsl_A 33 IGLYYNEDGIIPQLQAVAEAEARLNAQPHGA-----------S----LYLPM-----EG------LNCYRHAIAPLLFGA 86 (397)
T ss_dssp SCCCCCTTSCCCCCHHHHHHHHHHHHSCCCC-----------C----CCCCT-----TC------CHHHHHHHHHHHHCT
T ss_pred eeEEECCCCCccCcHHHHHHHHhhccCcccc-----------c----cCCCC-----Cc------hHHHHHHHHHHHhcC
Confidence 34689999999999999999876 4431100 0 00100 01 23678888888864
Q ss_pred -----CCC--cEEEeccC-chH-----------------------HHHHHHHHHcCCEEEEEecc-CCccccCHHHHHHH
Q 007454 186 -----SEN--DYVYDYES-EAV-----------------------EAMIRTSEKRGARVMSAEFS-WPRLRINSEKLRKM 233 (603)
Q Consensus 186 -----~~~--e~vf~~es-~sV-----------------------~~~~~~a~~~Ga~V~~~~~~-~~~g~i~~~~L~~~ 233 (603)
+++ +++++... +++ ......++..|+++..++.. ..++.++.++|++.
T Consensus 87 ~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 166 (397)
T 3fsl_A 87 DHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLAT 166 (397)
T ss_dssp TCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHH
T ss_pred CcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHH
Confidence 566 77765322 121 22233456678888888872 13578899999999
Q ss_pred HhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEeccccCCCCCC------CC-CC-CCCCCcEEE
Q 007454 234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDACALGPKDMD------SF-GL-SLVRPDFLI 301 (603)
Q Consensus 234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAaq~~~~~m~------~l-dl-s~~~~Dflv 301 (603)
|... ++++++++++..+|.||.++|.+. + ++|+++|+++++|.+...... . ++ .+ ...+.++++
T Consensus 167 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~ 242 (397)
T 3fsl_A 167 LKTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGA-GMEEDAYAIRAIASAGLPALVS 242 (397)
T ss_dssp HTTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSS-CTTGGGHHHHHHHHTTCCEEEE
T ss_pred HHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhcc-CcccccHHHHHHHhcCCCEEEE
Confidence 9742 246899999999999999998863 3 468899999999987543220 0 00 01 123456888
Q ss_pred EcccccCCCCCCc--eEEEEEe
Q 007454 302 CSFYQIFGENPSG--FGCLFVK 321 (603)
Q Consensus 302 ~S~hK~fG~~P~G--~G~L~vk 321 (603)
.|+.|.|| +.| +|++++.
T Consensus 243 ~S~SK~~~--~~G~riG~~~~~ 262 (397)
T 3fsl_A 243 NSFSKIFS--LYGERVGGLSVM 262 (397)
T ss_dssp EECTTTTT--CGGGCCEEEEEE
T ss_pred eccccccc--CcCCCeeEEEEe
Confidence 99999999 668 7888764
No 194
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.40 E-value=1.4e-11 Score=133.91 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=121.8
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|||..+. |.-++.+++++.+.+.... ..+.... -..+...+.+++++
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~------------------~~~~~~~-----~~~~~~~~la~~l~ 104 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELP------------------FYNTFFK-----TTHPAVVELSSLLA 104 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCS------------------CCCTTSS-----SCCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcc------------------ccccccc-----cCCHHHHHHHHHHH
Confidence 56789999875 2347888888765432110 0000000 01245568888999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccCCc-----------------------c--c--
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSWPR-----------------------L--R-- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~~~-----------------------g--~-- 224 (603)
++++.+.++++|... ++++...+..+.+ .+.+|......+.. + .
T Consensus 105 ~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (459)
T 4a6r_A 105 EVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIE 184 (459)
T ss_dssp HHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEEC
T ss_pred HhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeC
Confidence 999988888888764 4566666666654 34556543211110 0 0
Q ss_pred ----------cC--------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccc
Q 007454 225 ----------IN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACA 281 (603)
Q Consensus 225 ----------i~--------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq 281 (603)
++ .++|+++|.... .+++.+|.+...++.+|.+.| ++.+ ++|+++|+++++|-++
T Consensus 185 ~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 262 (459)
T 4a6r_A 185 QPWWYKHGKDMTPDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVI 262 (459)
T ss_dssp CCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCccccCCcccCHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 12 678888886311 125788888778888999888 8755 5899999999999886
Q ss_pred c-CCCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454 282 L-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 329 (603)
Q Consensus 282 ~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~ 329 (603)
. .+.. +..++.....||++++| |.+|+..-.+|++++++++++.+.
T Consensus 263 ~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 263 CGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKRVAEGLI 311 (459)
T ss_dssp TTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHH
T ss_pred cCCCcccccchHhhcCCCCCeeehh--hhhcCCCCCccceeeCHHHHHHhh
Confidence 6 2221 11122223568999887 977631135799999887765444
No 195
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.39 E-value=2e-11 Score=133.17 Aligned_cols=317 Identities=12% Similarity=0.052 Sum_probs=192.5
Q ss_pred CCc--eeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHH
Q 007454 107 SNH--TCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR 178 (603)
Q Consensus 107 ~~~--vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~ 178 (603)
++. -|||..+. |.-++.+++++.+.+.... +.. ++.-..+...+.+++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~-----------------~~~-------~~~~~~~~~~~L~e~ 126 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-----------------HVM-------FGGLTHEPAARLAKL 126 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS-----------------CCC-------SSSEECHHHHHHHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc-----------------Ccc-------ccccCCHHHHHHHHH
Confidence 456 89998874 3457888888765432110 000 000122455689999
Q ss_pred HHHHcCCCCCcEEEecc-CchHHHHHHHHHH-------cCC-EEEEEeccC-----------------------------
Q 007454 179 IMDFLNISENDYVYDYE-SEAVEAMIRTSEK-------RGA-RVMSAEFSW----------------------------- 220 (603)
Q Consensus 179 Ia~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~Ga-~V~~~~~~~----------------------------- 220 (603)
++++++...++++|... ++++...+..+.+ .|- +|...+..+
T Consensus 127 la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (457)
T 3tfu_A 127 LVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQV 206 (457)
T ss_dssp HHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCE
T ss_pred HHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCce
Confidence 99999887788877754 3466655555543 232 444321100
Q ss_pred ----Cc---cccCHHHHHHHHhhcCCCCCCeeEEEEeC-cccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC
Q 007454 221 ----PR---LRINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD 286 (603)
Q Consensus 221 ----~~---g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~-~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~ 286 (603)
+. ...+.++|++.|... .+++++|.+.. .+|.+|.+.| ++.+ ++|+++|+++++|-+|. .+..
T Consensus 207 ~~~~p~~~~~~~d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~ 283 (457)
T 3tfu_A 207 FAPQVPRDYDPAYSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRT 283 (457)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred EecCCCcccCHHHHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccc
Confidence 00 013678888888731 12578888888 9999999987 7755 48999999999999876 2221
Q ss_pred --CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCc
Q 007454 287 --MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 363 (603)
Q Consensus 287 --m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 363 (603)
+..++.....||++++| |.+|+ . -.+|+++.++++++.+..... |..
T Consensus 284 G~~~a~~~~~~~pdiit~s--K~l~g-G~~~lG~v~~~~~i~~~~~~~~~-~~~-------------------------- 333 (457)
T 3tfu_A 284 GALFAADHAGVSPDIMCVG--KALTG-GYLSLAATLCTADVAHTISAGAA-GAL-------------------------- 333 (457)
T ss_dssp SSSSTHHHHTCCCSEEEEC--GGGGT-TSSCCEEEEEEHHHHHHHHHSSS-CSC--------------------------
T ss_pred cchhHhHhcCCCceEEEEC--hhhhC-CCcceEEEEEcHHHHHHhhccCC-Cce--------------------------
Confidence 11222224569999776 87763 2 258999999887655521000 100
Q ss_pred ccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHH
Q 007454 364 KSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG 441 (603)
Q Consensus 364 ~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~ 441 (603)
.-.+| .|..+.++. + ++|+.+.+ +.+.+++
T Consensus 334 -----~~~~t~~~n~~a~aaa---------------~-------------------------aaL~~~~~---~~~~~~~ 365 (457)
T 3tfu_A 334 -----MHGPTFMANPLACAVS---------------V-------------------------ASVELLLG---QDWRTRI 365 (457)
T ss_dssp -----CCCCTTTTCHHHHHHH---------------H-------------------------HHHHHHHT---SCHHHHH
T ss_pred -----eEecCCCcCHHHHHHH---------------H-------------------------HHHHHHhh---hHHHHHH
Confidence 00111 122222111 1 46666544 3456778
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCc
Q 007454 442 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD 521 (603)
Q Consensus 442 ~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~ 521 (603)
+.+.+++.++|.++.. .|.+... ...|.++.|.+.+. .+...+.+.+.++||.++..
T Consensus 366 ~~~~~~l~~~L~~l~~-----~~~v~~v-----r~~G~~~~i~l~~~----~~~~~~~~~l~~~Gv~v~~~--------- 422 (457)
T 3tfu_A 366 TELAAGLTAGLDTARA-----LPAVTDV-----RVCGAIGVIECDRP----VDLAVATPAALDRGVWLRPF--------- 422 (457)
T ss_dssp HHHHHHHHHHHGGGGG-----STTEEEE-----EECSSCEEEEESSC----CCHHHHHHHHHHTTEECCCB---------
T ss_pred HHHHHHHHHHHHHHhc-----CCCeeee-----ecCCeEEEEEECCc----ccHHHHHHHHHHCCeEEEec---------
Confidence 8888999999988741 2324221 12467888888653 22233444334468877521
Q ss_pred hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
...+|+++.+..|.|||+++++.|++++.+
T Consensus 423 --------------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 423 --------------------------------RNLVYAMPPYICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp --------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 148999999999999999999999998864
No 196
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.39 E-value=2.8e-11 Score=129.93 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=122.2
Q ss_pred CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||+.++.. -++.+++++.+.+... + .++.+ .....+.+++++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~--------~---------~~~~~----------~~~~~~la~~l~ 103 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG--------L---------SFGAP----------TEMEVKMAQLVT 103 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC--------S---------CCSSC----------CHHHHHHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC--------c---------ccCCC----------CHHHHHHHHHHH
Confidence 5678999987653 4788999887643211 0 00111 234567888999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccC----------------------Cccc-----------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSW----------------------PRLR----------- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~----------------------~~g~----------- 224 (603)
++++ .+++++|... ++++...+..++. .+.+|...+..+ ..+.
T Consensus 104 ~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
T 4e77_A 104 DLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTC 182 (429)
T ss_dssp HHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEE
T ss_pred hhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeec
Confidence 9998 5778877753 3466555555442 344554421110 0000
Q ss_pred --cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc---CCCCCCCCCCCC
Q 007454 225 --INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL---GPKDMDSFGLSL 294 (603)
Q Consensus 225 --i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~---~~~~m~~ldls~ 294 (603)
-+.++|+++|... .+++.+|.+...++.+|.+.| ++.+ ++|+++|+++++|.++. .++ +..++.-.
T Consensus 183 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~-~~~~~~~~ 258 (429)
T 4e77_A 183 TYNDLASVRQAFEQY---PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL-AGAQDYYH 258 (429)
T ss_dssp CTTCHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT-TCHHHHTT
T ss_pred CCCCHHHHHHHHHhc---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc-chHHHhcC
Confidence 1788999998742 136888888888888999999 8865 58999999999999987 232 11122223
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
..||++++| |.||. ...+|+++.++++++.+.+
T Consensus 259 ~~pdi~t~s--K~~~~-G~~~G~~~~~~~~~~~l~~ 291 (429)
T 4e77_A 259 VIPDLTCLG--KIIGG-GMPVGAFGGRREVMNALAP 291 (429)
T ss_dssp CCCSEEEEE--GGGGT-TSCCEEEEECHHHHTTBTT
T ss_pred CCCCeeeec--ccccC-CCCeEEEEECHHHHHHhcc
Confidence 467987666 98874 4568999998887665553
No 197
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.39 E-value=4.5e-11 Score=130.96 Aligned_cols=321 Identities=13% Similarity=0.095 Sum_probs=189.5
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
++.-|||+.+. |.-++.+++++.+.+.... ....... -......+.+++++
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~------------------~~~~~~~-----~~~~~~~~lae~l~ 109 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELP------------------YYNTFFK-----TTHVPAIALAQKLA 109 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS------------------CCCSSSS-----EECHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc------------------ccccccc-----cCCHHHHHHHHHHH
Confidence 56789999764 3457889888765432110 0000000 01244567888999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccCC------------------------------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSWP------------------------------ 221 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~~------------------------------ 221 (603)
++++.+.++++|... ++++...++.+++ .+-+|....-.+.
T Consensus 110 ~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (472)
T 3hmu_A 110 ELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQ 189 (472)
T ss_dssp HHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECC
T ss_pred HhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCC
Confidence 999877777777653 4566666666654 2344543221110
Q ss_pred -c-cc----cC--------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc
Q 007454 222 -R-LR----IN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL 282 (603)
Q Consensus 222 -~-g~----i~--------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~ 282 (603)
. .+ .+ .++|++.|.... .+++.+|.+-..++.+|.+.| ++.+ ++|+++|+++++|-++.
T Consensus 190 p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 267 (472)
T 3hmu_A 190 PNWWAEGGDMDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC 267 (472)
T ss_dssp CCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CccccCCcccCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 0 00 12 678888886311 135788888778899999998 7755 58999999999998876
Q ss_pred -CCCC--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCC
Q 007454 283 -GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE 358 (603)
Q Consensus 283 -~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e 358 (603)
.+.. +...+.....||++++| |.+|+ . -.+|++++++++++.+.+..+.
T Consensus 268 gfgr~G~~~a~~~~~v~pdi~t~s--K~l~g-g~~plG~v~~~~~i~~~~~~~~~~------------------------ 320 (472)
T 3hmu_A 268 GFGRTGNWFGTQTMGIRPHIMTIA--KGLSS-GYAPIGGSIVCDEVAHVIGKDEFN------------------------ 320 (472)
T ss_dssp TTTTTSSSCHHHHHTCCCSEEEEC--GGGTT-TSSCCEEEEEEHHHHHHHTTSCBC------------------------
T ss_pred CCcccCccchhHHhCCCCceeeec--hhhhc-CCcceEEEEECHHHHHhcccCCcc------------------------
Confidence 3221 11112223469999888 97763 2 2469999998887656321000
Q ss_pred cccCcccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHH
Q 007454 359 PEQTSKSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTM 436 (603)
Q Consensus 359 ~~~~~~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~ 436 (603)
-.+| .|..+.++. + ++|+.+++ +.
T Consensus 321 -----------~~~t~~~np~a~aAa---------------~-------------------------aaL~~~~~---~~ 346 (472)
T 3hmu_A 321 -----------HGYTYSGHPVAAAVA---------------L-------------------------ENLRILEE---EN 346 (472)
T ss_dssp -----------CCCTTTTCHHHHHHH---------------H-------------------------HHHHHHHH---TT
T ss_pred -----------ccCCCCCCHHHHHHH---------------H-------------------------HHHHHHHH---hH
Confidence 0111 122221111 1 46666544 34
Q ss_pred HHHHHH-HHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCC--ccC------HHHHHHHHhcCCc
Q 007454 437 ISRRGR-CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE--KIE------PVLVQKLADRENI 507 (603)
Q Consensus 437 i~~r~~-~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~--~v~------~~~V~~Lad~~gI 507 (603)
+.++++ .+.+++.+.|.+|.. .|.+... ...|.++.|.+.+.... .+. ...+.+.+-++||
T Consensus 347 ~~~~~~~~~~~~l~~~L~~l~~-----~~~v~~v-----r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 416 (472)
T 3hmu_A 347 ILDHVRNVAAPYLKEKWEALTD-----HPLVGEA-----KIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNL 416 (472)
T ss_dssp HHHHHHHTHHHHHHHHHHGGGG-----STTEEEE-----EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCCeEEE-----EecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCc
Confidence 456667 777888888877631 2334322 12467888887542110 000 1123333334576
Q ss_pred EEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 508 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 508 ~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
.++.+ + +.||+++.+..|.|||+++++.|++++.+-
T Consensus 417 ~v~~~----------------------------------------g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 417 IMRHV----------------------------------------G-DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp CCEEE----------------------------------------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEec----------------------------------------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 65421 1 589999999999999999999999998763
No 198
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.38 E-value=3.1e-13 Score=142.69 Aligned_cols=183 Identities=12% Similarity=0.059 Sum_probs=117.7
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc---
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--- 183 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l--- 183 (603)
..-.|+|..+..+.++.+.+++.+.+... ..+.|+. ..-..+.|++|++++
T Consensus 32 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------------------------~~~~y~~--~~g~~~lr~~la~~~~~~ 85 (396)
T 2q7w_A 32 GIGVYKDETGKTPVLTSVKKAEQYLLENE------------------------TTKNYLG--IDGIPEFGRCTQELLFGK 85 (396)
T ss_dssp SCCSCCCTTSCCCCCHHHHHHHHHHHHHC------------------------CCCCCCC--TTCCHHHHHHHHHHHHCT
T ss_pred ccccccCCCCCccCcHHHHHHHHhhcCcc------------------------cccCCCC--CCCCHHHHHHHHHHHhcC
Confidence 44568888888888899999876532110 0000100 011247888888888
Q ss_pred C---CCCCcEEE--eccC-chHHHH-----------------------HHHHHHcCCEEEEEeccC-CccccCHHHHHHH
Q 007454 184 N---ISENDYVY--DYES-EAVEAM-----------------------IRTSEKRGARVMSAEFSW-PRLRINSEKLRKM 233 (603)
Q Consensus 184 n---a~~~e~vf--~~es-~sV~~~-----------------------~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~ 233 (603)
+ ++++++++ +... +++..+ ...++..|+++..++.+. .+..++.++|++.
T Consensus 86 ~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 165 (396)
T 2q7w_A 86 GSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINS 165 (396)
T ss_dssp TCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHH
T ss_pred CCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHH
Confidence 3 24778876 4321 222222 223445677887777631 2567899999999
Q ss_pred HhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCC-----CCCCCC-CCCC-CCcEEEE
Q 007454 234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPK-----DMDSFG-LSLV-RPDFLIC 302 (603)
Q Consensus 234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~-----~m~~ld-ls~~-~~Dflv~ 302 (603)
|... ++++++++++..+|.||.++|.+. +++|+++|+++++|.++.... ...++. +... ..++++.
T Consensus 166 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 242 (396)
T 2q7w_A 166 LNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVAS 242 (396)
T ss_dssp HTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEE
T ss_pred HHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEE
Confidence 8642 125789999999999999999763 346889999999999865421 001121 2111 3468899
Q ss_pred cccccCCCCCCc--eEEEEE
Q 007454 303 SFYQIFGENPSG--FGCLFV 320 (603)
Q Consensus 303 S~hK~fG~~P~G--~G~L~v 320 (603)
|++|.|| +.| +|++++
T Consensus 243 s~sK~~~--~~G~riG~~~~ 260 (396)
T 2q7w_A 243 SYSXNFG--LYNERVGACTL 260 (396)
T ss_dssp ECTTTTT--CGGGCCEEEEE
T ss_pred ecccccc--ccccccceEEE
Confidence 9999999 668 699987
No 199
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.37 E-value=1.4e-10 Score=126.16 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=119.5
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
++.-|||..+. +.-++.+++++.+.+.... ...... + -..+...+.+++++
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~------------------~~~~~~----~-~~~~~~~~la~~l~ 105 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLA------------------YYHAYV----G-HGTEASITLAKMII 105 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHS------------------CCCCCT----T-CCCHHHHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc------------------cccccc----c-cCCHHHHHHHHHHH
Confidence 46779998765 3347888888765322100 000000 0 01244567889999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccC-------------------------------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSW------------------------------- 220 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~------------------------------- 220 (603)
++++.+.++++|... ++++...+..+.+ .+.+|......+
T Consensus 106 ~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (460)
T 3gju_A 106 DRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTE 185 (460)
T ss_dssp HHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEEC
T ss_pred hhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeC
Confidence 998888888888754 3566665666553 234555322111
Q ss_pred -------CccccC--------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecc
Q 007454 221 -------PRLRIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDAC 280 (603)
Q Consensus 221 -------~~g~i~--------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAa 280 (603)
++..++ .++|+++|.... .+++++|.+...+|.+|.+.| ++.+ ++|+++|+++++|-+
T Consensus 186 ~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv 263 (460)
T 3gju_A 186 APYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEV 263 (460)
T ss_dssp CCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred CCccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 000011 578888886311 125788888888999999777 7755 589999999999988
Q ss_pred cc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCc
Q 007454 281 AL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPIL 328 (603)
Q Consensus 281 q~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L 328 (603)
+. .+.. +..++.....||++++| |.+|+ . ..+|++++++++++.+
T Consensus 264 ~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~g-G~~~lg~v~~~~~i~~~~ 312 (460)
T 3gju_A 264 VTGFGRLGTMFGSDHYGIKPDLITIA--KGLTS-AYAPLSGVIVADRVWQVL 312 (460)
T ss_dssp TTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTT-TSSCCEEEEEEHHHHHHH
T ss_pred ccCCCcccccchHhhcCCCCCeeeee--hhhcC-CCCCeEEEEECHHHHHHH
Confidence 66 3321 11122223468999887 98873 2 2479999998876555
No 200
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.37 E-value=1.3e-10 Score=125.68 Aligned_cols=194 Identities=11% Similarity=0.108 Sum_probs=119.6
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||..+. |.-++.+++++.+.+... . + .++.. + ..+...+.+++++
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~----~-------------~-~~~~~----~--~~~~~~~la~~l~ 97 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI----A-------------H-STLLG----M--TNVPATQLAETLI 97 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC----S-------------C-CCCSS----S--EEHHHHHHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc----c-------------C-ccccc----c--CCHHHHHHHHHHH
Confidence 56789998873 335788888877643321 0 0 00000 0 1234567888999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH----cC----CEEEEEeccCC------------------------------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK----RG----ARVMSAEFSWP------------------------------ 221 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~----~G----a~V~~~~~~~~------------------------------ 221 (603)
++++...++++|... ++++...+..+.+ .| .+|......+.
T Consensus 98 ~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (448)
T 3dod_A 98 DISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAP 177 (448)
T ss_dssp HHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEEC
T ss_pred HhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeC
Confidence 999877777777653 4566665665554 44 56654322110
Q ss_pred --c------------cccCHHHHHHHHhhcCCCCCCeeEEEEeCcc-cccccccc----HHHH-HHHHhCCcEEEEeccc
Q 007454 222 --R------------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHS-RMTGARYP----YLWM-RIAQENDWHILIDACA 281 (603)
Q Consensus 222 --~------------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~S-n~TG~~~p----l~~i-~~a~e~g~~vlvDAaq 281 (603)
+ ...+.++|+++|... .+++.+|.+.... |.+|.+.| ++.+ ++|+++|+++++|-++
T Consensus 178 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~ 254 (448)
T 3dod_A 178 IPYVYRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVA 254 (448)
T ss_dssp CCCCTTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCccccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccc
Confidence 0 001367888888621 1256777776666 88998887 7755 5899999999999886
Q ss_pred c-CCCC--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCC
Q 007454 282 L-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 282 ~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p 330 (603)
. .+.. +...+.....+|++++| |.+|. . ..+|+++.++++++.+.+
T Consensus 255 ~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~-G~~~ig~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 255 TGFGRTGKMFACEHENVQPDLMAAG--KGITG-GYLPIAVTFATEDIYKAFYD 304 (448)
T ss_dssp TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT-TSSCCEEEEEEHHHHHTTCS
T ss_pred cCCCcccchhhhhhcCCCCCEEEec--ccccC-CcCceEEEEECHHHHHHhhh
Confidence 6 2210 11223334568998887 98873 2 246999999887766653
No 201
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.37 E-value=2.4e-12 Score=136.56 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=112.8
Q ss_pred ceeeecCCC---CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454 109 HTCLDYFGI---GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI 185 (603)
Q Consensus 109 ~vYLDyaa~---tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna 185 (603)
.|| |+++. +++++.+++++..+ ++|. ...+..++.+++++|+
T Consensus 29 ~v~-~~~~~~~~~~~~~~v~~a~~~~------------------------~~~~----------~~~~~~~~~~a~~~g~ 73 (374)
T 2aeu_A 29 ALY-DLSGLSGGFLIDEKDKALLNTY------------------------IGSS----------YFAEKVNEYGLKHLGG 73 (374)
T ss_dssp GCE-ECSSCCCCCCCCHHHHHHHTST------------------------THHH----------HHHHHHHHHHHHHHTC
T ss_pred cee-eecccCCCCCCCHHHHHHHHHh------------------------cCch----------HHHHHHHHHHHHHhCC
Confidence 478 98864 68899999997521 2221 1224566667888998
Q ss_pred C-CCcEEEecc-CchHHHHHHHHHHcCCEEEEEeccCCc-----------c-c----cCHHHHHHHHhhcCCCCCCeeE-
Q 007454 186 S-ENDYVYDYE-SEAVEAMIRTSEKRGARVMSAEFSWPR-----------L-R----INSEKLRKMVVSKGKKKKQRGL- 246 (603)
Q Consensus 186 ~-~~e~vf~~e-s~sV~~~~~~a~~~Ga~V~~~~~~~~~-----------g-~----i~~~~L~~~l~~~~~~~~~t~L- 246 (603)
+ ++++++... ++++..++..+ .|.+|......++. | . .+.++|++. . +++++
T Consensus 74 ~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v~d~~~l~~~-~------~~~~~~ 144 (374)
T 2aeu_A 74 DENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNK-I------DKDTLV 144 (374)
T ss_dssp CTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTT-C------CTTEEE
T ss_pred CCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEeCCHHHHHhc-C------CCccEE
Confidence 4 356655432 23444444433 56666655442211 0 0 256666554 2 36889
Q ss_pred EEEeCcccccc-ccccHHHH-HHHHhCCcEEEEeccccCCCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 247 FVFPLHSRMTG-ARYPYLWM-RIAQENDWHILIDACALGPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 247 v~~~~~Sn~TG-~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
|.++..+|.|| .+.|++.+ ++|+++|+++++|.++..... ......-.+++|+++.|+||++++ | ++|+++.++
T Consensus 145 v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g-~-~~G~~~~~~ 222 (374)
T 2aeu_A 145 IITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG-P-RGGLLAGKK 222 (374)
T ss_dssp EEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS-C-SCEEEEEEH
T ss_pred EEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC-c-ceEEEEECH
Confidence 99999999999 88899855 589999999999997644320 001001125789999999999875 5 899999998
Q ss_pred CCCcCcC
Q 007454 323 STVPILV 329 (603)
Q Consensus 323 ~~~~~L~ 329 (603)
++++.+.
T Consensus 223 ~~~~~l~ 229 (374)
T 2aeu_A 223 ELVDKIY 229 (374)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7654443
No 202
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.36 E-value=1.4e-11 Score=131.97 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=119.8
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC-
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI- 185 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna- 185 (603)
..-+|+|..+.++.++.+.+++.+.+.... . .+| ..+ . | ..+.|+.|+++++.
T Consensus 55 ~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~-~--~~Y------------~~~-~----g------~~~lr~~ia~~l~~~ 108 (420)
T 4f4e_A 55 GVGVYTNEDGKIPLLRAVRDAEKARVEAGL-P--RGY------------LPI-D----G------IAAYDASVQKLLLGD 108 (420)
T ss_dssp CCCSCCCTTSCCCCCHHHHHHHHHHHHTCC-C--CCC------------CCT-T----C------CHHHHHHHHHHHHCT
T ss_pred eeeeeECCCCCccCcHHHHHHHHHHhccCC-C--CCC------------CCC-C----C------cHHHHHHHHHHhcCC
Confidence 445799999999999999998776432100 0 000 100 0 1 23677777777754
Q ss_pred -----CCC--cEEEeccC-chH-----------------------HHHHHHHHHcCCEEEEEec-cCCccccCHHHHHHH
Q 007454 186 -----SEN--DYVYDYES-EAV-----------------------EAMIRTSEKRGARVMSAEF-SWPRLRINSEKLRKM 233 (603)
Q Consensus 186 -----~~~--e~vf~~es-~sV-----------------------~~~~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~~ 233 (603)
+++ +++++... +++ ......++..|+++..++. +..++.++.++|++.
T Consensus 109 ~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 188 (420)
T 4f4e_A 109 DSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAA 188 (420)
T ss_dssp TCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred CccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHH
Confidence 455 67665322 121 1123345567888888887 223678899999999
Q ss_pred HhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCC-C----CCCC-CC-CCCCCcEEEE
Q 007454 234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPK-D----MDSF-GL-SLVRPDFLIC 302 (603)
Q Consensus 234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~-~----m~~l-dl-s~~~~Dflv~ 302 (603)
|... ++++++++++..+|.||..+|.+.+ ++|+++|+++++|.+...-. + ..++ .+ ...+.++++.
T Consensus 189 l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 265 (420)
T 4f4e_A 189 LNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSS 265 (420)
T ss_dssp HTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEE
T ss_pred HHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEE
Confidence 9631 2468999999999999999997632 35889999999999853221 0 0000 01 1245678999
Q ss_pred cccccCCCCCCc--eEEEEE
Q 007454 303 SFYQIFGENPSG--FGCLFV 320 (603)
Q Consensus 303 S~hK~fG~~P~G--~G~L~v 320 (603)
|+.|.|| +.| +|++++
T Consensus 266 S~SK~~~--~~G~RiG~~~~ 283 (420)
T 4f4e_A 266 SFSKSFS--LYGERVGALSI 283 (420)
T ss_dssp ECTTTTT--CGGGCEEEEEE
T ss_pred eCCccCc--CcCCCcEEEEE
Confidence 9999999 668 898875
No 203
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.35 E-value=5.1e-11 Score=129.27 Aligned_cols=137 Identities=9% Similarity=0.061 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEecc------------------------CchHHH-HHHHHHHcCCEEEEEeccCCcc
Q 007454 169 SGLESAMKKRIMDFLNISENDYVYDYE------------------------SEAVEA-MIRTSEKRGARVMSAEFSWPRL 223 (603)
Q Consensus 169 ~~~~~~aR~~Ia~~lna~~~e~vf~~e------------------------s~sV~~-~~~~a~~~Ga~V~~~~~~~~~g 223 (603)
....++.+++|++++|.+. .+++..- +.+... +...++..|++++.++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~~-~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~---- 155 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGALG-VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM---- 155 (430)
T ss_dssp CHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred CHHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC----
Confidence 4556788999999999754 4544321 111211 112456678888887754
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEE
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC 302 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~ 302 (603)
+.++|++.|.. +|++|.+...+|.||.+.|++.+ ++|+++|+++++|.++..|. -.+...+++|+++.
T Consensus 156 --d~~~l~~ai~~------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~---~~~~~~~g~div~~ 224 (430)
T 3ri6_A 156 --DSLAVEHACDE------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPY---LLEAKRLGVDIEVL 224 (430)
T ss_dssp --CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTT---TCCGGGGTCSEEEE
T ss_pred --CHHHHHHhhCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc---cCChHHcCCEEEEE
Confidence 68889988863 69999999999999999999966 58999999999999988876 24555678999999
Q ss_pred cccccCCCCCCceEEEEEe
Q 007454 303 SFYQIFGENPSGFGCLFVK 321 (603)
Q Consensus 303 S~hK~fG~~P~G~G~L~vk 321 (603)
|++|++|++..++|.+++.
T Consensus 225 S~sK~l~g~g~~~gG~vv~ 243 (430)
T 3ri6_A 225 SSTKFISGGGTSVGGVLID 243 (430)
T ss_dssp ECCCEEETTEEECCEEEEE
T ss_pred CCcccccCCCCceEEEEEE
Confidence 9999998421237777773
No 204
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.35 E-value=2.2e-10 Score=125.64 Aligned_cols=324 Identities=12% Similarity=0.059 Sum_probs=190.8
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||..+. |.-++.+++++.+.+.... + +... . -..+...+..++++
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~-----------------~-~~~~-~-----~~~~~~~~la~~l~ 107 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP-----------------Y-ASPW-Y-----MATSPAARLAEKIA 107 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-----------------C-CCTT-T-----CBCHHHHHHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc-----------------C-cccC-c-----cCCHHHHHHHHHHH
Confidence 56789998754 4458889988765432110 0 0000 0 01245567888899
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHHc--------CCEEEEEeccCC-----------------------cc--cc-
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEKR--------GARVMSAEFSWP-----------------------RL--RI- 225 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~~--------Ga~V~~~~~~~~-----------------------~g--~i- 225 (603)
++++...+.++|... ++++...+..+++. +.+|......+. .+ .+
T Consensus 108 ~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
T 3i5t_A 108 TLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLS 187 (476)
T ss_dssp TTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEEC
T ss_pred hcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeC
Confidence 999877777777653 45666656665431 345553221110 00 00
Q ss_pred --------C----------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc
Q 007454 226 --------N----------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL 282 (603)
Q Consensus 226 --------~----------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~ 282 (603)
+ .++|+++|.... .+++.+|.+-..++.+|.+.| ++.+ ++|+++|+++++|-++.
T Consensus 188 ~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~ 265 (476)
T 3i5t_A 188 SPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT 265 (476)
T ss_dssp CCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 1 678988886311 125788888888889998776 7755 48999999999998876
Q ss_pred -CCCC--CCCCC-CCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCC
Q 007454 283 -GPKD--MDSFG-LSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCE 356 (603)
Q Consensus 283 -~~~~--m~~ld-ls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~ 356 (603)
.+.. +..+. .....||++++| |.+|+ . -.+|++++++++++.+.+.... +.
T Consensus 266 g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~-------------------- 322 (476)
T 3i5t_A 266 GFGRCGEWFASEKVFGVVPDIITFA--KGVTS-GYVPLGGLAISEAVLARISGENAKGSW-------------------- 322 (476)
T ss_dssp TTTTTSSSCHHHHTTCCCCSEEEEC--GGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCE--------------------
T ss_pred CCccccCceeeecccCCCcchhhhh--hhhcC-CCcCeEEEEECHHHHHHHhcCCccccc--------------------
Confidence 2221 11122 233469999887 98773 2 3469999998877656532100 00
Q ss_pred CCcccCcccccccccCCC--ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH
Q 007454 357 TEPEQTSKSKQEKVAATN--TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL 434 (603)
Q Consensus 357 ~e~~~~~~~~~~~e~GT~--n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl 434 (603)
+ .-.+|. |..+.++. + ++|+.+++
T Consensus 323 ---------~--~~~~t~~~np~a~aAa---------------~-------------------------aaL~~~~~--- 348 (476)
T 3i5t_A 323 ---------F--TNGYTYSNQPVACAAA---------------L-------------------------ANIELMER--- 348 (476)
T ss_dssp ---------E--CCCCTTTTCHHHHHHH---------------H-------------------------HHHHHHHH---
T ss_pred ---------c--cccCCCCcCHHHHHHH---------------H-------------------------HHHHHHHh---
Confidence 0 001221 22221111 1 46666554
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccC-------HHHHHHHHhcCCc
Q 007454 435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE-------PVLVQKLADRENI 507 (603)
Q Consensus 435 ~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~-------~~~V~~Lad~~gI 507 (603)
+.+.++++.+.+++.+.|.+|. ..|.+..+- ..|.++.+.+.+....... ...+.+.+-++||
T Consensus 349 ~~~~~~~~~~~~~l~~~L~~l~-----~~~~v~~v~-----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 418 (476)
T 3i5t_A 349 EGIVDQAREMADYFAAALASLR-----DLPGVAETR-----SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGL 418 (476)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTT-----TSTTEEEEE-----EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cCCCeEEEE-----ecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCC
Confidence 3456778888889999988774 123343221 2467888877653211100 1122233334577
Q ss_pred EEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454 508 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD 584 (603)
Q Consensus 508 ~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~ 584 (603)
.++. .+ +.||+++.+..|.+||+++++.|++++.+-
T Consensus 419 ~v~~----------------------------------------~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 419 IVRP----------------------------------------LG-DLCVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp ECEE----------------------------------------ET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEe----------------------------------------cC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6642 11 589999999999999999999999998753
No 205
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.33 E-value=3.7e-11 Score=129.00 Aligned_cols=141 Identities=8% Similarity=0.082 Sum_probs=97.2
Q ss_pred ccchHHHHHHHHHHHHHHHcCCCCCcEEEec-----------------------cCch-HHHHHHH-HHHcCCEEEEEec
Q 007454 164 HGGQESGLESAMKKRIMDFLNISENDYVYDY-----------------------ESEA-VEAMIRT-SEKRGARVMSAEF 218 (603)
Q Consensus 164 ~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~-----------------------es~s-V~~~~~~-a~~~Ga~V~~~~~ 218 (603)
|+.......++.+++|+++.|.+ +.+++.. .+.+ ...+... +++.|+++..++.
T Consensus 61 y~r~~~p~~~~l~~~la~l~g~~-~~~~~~sG~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 139 (400)
T 3nmy_A 61 YSRTHNPTRFAYERCVAALEGGT-RAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139 (400)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECT
T ss_pred cccCCCHHHHHHHHHHHHHhCCC-CEEEecCHHHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECC
Confidence 33333455667888888888865 3333321 1111 1222223 4556888888776
Q ss_pred cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 007454 219 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP 297 (603)
Q Consensus 219 ~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~ 297 (603)
+ +.++|++.|.. ++++|.+...+|.||.+.|++.+ ++|+++|+++++|.++..|....+++ +++
T Consensus 140 ~------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~---~g~ 204 (400)
T 3nmy_A 140 T------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLS---LGA 204 (400)
T ss_dssp T------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGG---GTC
T ss_pred C------CHHHHHHHhcc------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---cCC
Confidence 4 67889888863 68999999999999999999966 58999999999999987553112443 479
Q ss_pred cEEEEcccccCCCCCCceEE-EEE
Q 007454 298 DFLICSFYQIFGENPSGFGC-LFV 320 (603)
Q Consensus 298 Dflv~S~hK~fG~~P~G~G~-L~v 320 (603)
|+++.|++|++|++...+|. +++
T Consensus 205 div~~S~sK~l~g~g~~~gG~~vv 228 (400)
T 3nmy_A 205 DLVVHSATKYLNGHSDMVGGIAVV 228 (400)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEE
T ss_pred cEEEecCccccCCCCCcceeEEEE
Confidence 99999999999862134555 444
No 206
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.32 E-value=2.4e-10 Score=122.81 Aligned_cols=188 Identities=12% Similarity=0.073 Sum_probs=122.0
Q ss_pred CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||++++.. -++.+++++.+.+... . .... ......+.+++++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~---------~--------~~~~----------~~~~~~~l~~~la 103 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERG---------T--------SFGA----------PTEIENKLAKLVI 103 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHC---------S--------CCSS----------CCHHHHHHHHHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhC---------c--------CcCC----------CCHHHHHHHHHHH
Confidence 5678999987642 5888999876543210 0 0000 1134457788899
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccCC----------------------cccc----------
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSWP----------------------RLRI---------- 225 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~~----------------------~g~i---------- 225 (603)
++++ .+++++|... ++++...+..+.. .+-+|...+..+. .+..
T Consensus 104 ~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
T 3k28_A 104 ERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITV 182 (429)
T ss_dssp HHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEE
T ss_pred HhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeec
Confidence 9987 5778887753 4566665555543 3445655432211 0000
Q ss_pred ---CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC---CCCCCCCCCCC
Q 007454 226 ---NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG---PKDMDSFGLSL 294 (603)
Q Consensus 226 ---~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~---~~~m~~ldls~ 294 (603)
+.++|++.|... .+++.+|.+...++.+|.+.| ++.+ ++|+++|+++++|-++.. ++ +...+...
T Consensus 183 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~-~~~~~~~~ 258 (429)
T 3k28_A 183 AYNDLESVKYAFEQF---GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAY-NCGQGYYG 258 (429)
T ss_dssp ETTCHHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSST-THHHHHHT
T ss_pred CCCCHHHHHHHHHhC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCc-chHHHHhC
Confidence 788999988732 125788888888888999999 8866 589999999999999853 11 01111223
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454 295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 329 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~ 329 (603)
..+|++++| |.||. ...+|++++++++++.+.
T Consensus 259 ~~~di~t~s--K~~~~-G~~iG~~~~~~~~~~~~~ 290 (429)
T 3k28_A 259 VTPDLTCLG--KVIGG-GLPVGAYGGKAEIMRQVA 290 (429)
T ss_dssp CCCSEEEEC--GGGGT-TSCCEEEEECHHHHTTBT
T ss_pred CCCceehhh--hhhcC-CCCeEEEEEcHHHHhhhc
Confidence 468988877 98874 557999999988766554
No 207
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.31 E-value=6.5e-11 Score=126.23 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=80.9
Q ss_pred HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCc-cccccccccHHHHH-H---HH------hC
Q 007454 203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYPYLWMR-I---AQ------EN 271 (603)
Q Consensus 203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~-Sn~TG~~~pl~~i~-~---a~------e~ 271 (603)
...++..|+++..+++++.++.++.++|++.|..... .+.+.++.+... +|.||.++|.+.+. + |+ ++
T Consensus 140 ~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~ 218 (418)
T 3rq1_A 140 RVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA-KQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN 218 (418)
T ss_dssp HHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHH-HCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhc-cCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC
Confidence 3456678999999998655668999999999874100 013447888777 89999999997443 3 44 89
Q ss_pred CcEEEEeccccC-CCC---CCCC--CCCCCCCc---EEEEcccccCCCCCCc--eEEEEE---eCCCCc
Q 007454 272 DWHILIDACALG-PKD---MDSF--GLSLVRPD---FLICSFYQIFGENPSG--FGCLFV---KKSTVP 326 (603)
Q Consensus 272 g~~vlvDAaq~~-~~~---m~~l--dls~~~~D---flv~S~hK~fG~~P~G--~G~L~v---kk~~~~ 326 (603)
|+++++|.+... ..+ ..++ .......| +++.|++|.||. .| +|++++ ++++++
T Consensus 219 ~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~--~G~r~G~~~~~~~~~~~~~ 285 (418)
T 3rq1_A 219 NVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTM--YGQRVGAMIGISDDEEIAD 285 (418)
T ss_dssp EEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTC--CSSCCEEEEEEESSHHHHH
T ss_pred CeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcC--cCCcceEEEEEeCCHHHHH
Confidence 999999998521 110 0011 11223445 778899999983 35 788887 555443
No 208
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.29 E-value=2.8e-11 Score=128.86 Aligned_cols=191 Identities=12% Similarity=0.050 Sum_probs=114.7
Q ss_pred CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc-CC
Q 007454 107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI 185 (603)
Q Consensus 107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-na 185 (603)
..-.|+|+.+..+.++.+.+++.+..... .+.|+.. .-..+.|+.|++++ +.
T Consensus 43 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-------------------------~~~Y~~~--~g~~~lr~~la~~~~~~ 95 (413)
T 3t18_A 43 ALGTLLDDKGKIIALPSVYDRLDEMDRSH-------------------------IASYAPI--EGEKDYRKIVIDTLFGP 95 (413)
T ss_dssp CSCCCBCTTSCBCCCHHHHHHHHHSCHHH-------------------------HHSCCCT--TCCHHHHHHHHHHHHGG
T ss_pred cccCccCCCCCcCChHHHHHHHHhcCccc-------------------------ccCcCCC--CCCHHHHHHHHHHHhcc
Confidence 34568899888899999988876532100 0000000 01135677777755 32
Q ss_pred C-CC---cEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454 186 S-EN---DYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK 239 (603)
Q Consensus 186 ~-~~---e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~ 239 (603)
. ++ +++++... .........++..|+++..+++...++.++.++|++.|....
T Consensus 96 ~~~~~~~~i~~t~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~- 174 (413)
T 3t18_A 96 YKPEGYISAIATPGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGI- 174 (413)
T ss_dssp GCCSSEEEEEEESHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHH-
T ss_pred cCccccCcEEEcCccHHHHHHHHHHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHh-
Confidence 2 33 66554211 111222344566799999998854456889999999987410
Q ss_pred CCCCee-EEEEeCc-cccccccccHHHHH-H---HH------hCCcEEEEeccccC-C---CCCCCC-C-CCCCCCc---
Q 007454 240 KKKQRG-LFVFPLH-SRMTGARYPYLWMR-I---AQ------ENDWHILIDACALG-P---KDMDSF-G-LSLVRPD--- 298 (603)
Q Consensus 240 ~~~~t~-Lv~~~~~-Sn~TG~~~pl~~i~-~---a~------e~g~~vlvDAaq~~-~---~~m~~l-d-ls~~~~D--- 298 (603)
.++++ ++.+... +|.||.++|.+.+. + |+ ++|+++++|.+... . ....++ . ......|
T Consensus 175 -~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (413)
T 3t18_A 175 -RDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFV 253 (413)
T ss_dssp -HHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEE
T ss_pred -hcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeE
Confidence 01344 7777776 99999999997543 3 44 89999999997421 1 100011 1 1123344
Q ss_pred EEEEcccccCCCCCCc--eEEEEE---eCCCCcCc
Q 007454 299 FLICSFYQIFGENPSG--FGCLFV---KKSTVPIL 328 (603)
Q Consensus 299 flv~S~hK~fG~~P~G--~G~L~v---kk~~~~~L 328 (603)
+++.|++|.|| ..| +|++++ ++++++.+
T Consensus 254 i~~~S~sK~~~--~~G~riG~~~~~~~~~~~~~~~ 286 (413)
T 3t18_A 254 VVAFSMSKSHT--AYGLRSGAAVGISSSKEIIEEF 286 (413)
T ss_dssp EEEEEHHHHTT--CGGGCCEEEEEEESCHHHHHHH
T ss_pred EEEEecCccCC--CcCcCcEEEEEecCCHHHHHHH
Confidence 67789999999 557 799987 55554433
No 209
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.27 E-value=5.1e-10 Score=120.27 Aligned_cols=189 Identities=14% Similarity=0.149 Sum_probs=118.5
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|.++. +..++.+++++.+.+.. ++ +. +. ......+.+++++
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~---------------------~~-~~----~~-~~~~~~~l~~~la 106 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR---------------------GW-LY----GA-PGEAEVLLAEKIL 106 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT---------------------CS-CC----SS-CCHHHHHHHHHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh---------------------CC-CC----CC-CCHHHHHHHHHHH
Confidence 45789998754 33578888887764321 00 00 00 2345667889999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEeccCCc----------------------c-------c----
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEFSWPR----------------------L-------R---- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~~~~~----------------------g-------~---- 224 (603)
++++ .+++++|... ++++...+..++ ..+.+|...+..+.. + .
T Consensus 107 ~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~ 185 (434)
T 2epj_A 107 GYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVT 185 (434)
T ss_dssp HHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEE
T ss_pred HhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEec
Confidence 9996 5677777653 345555555532 234466655422210 1 0
Q ss_pred --cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCCCCC---CCCCC
Q 007454 225 --INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKDMDS---FGLSL 294 (603)
Q Consensus 225 --i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~m~~---ldls~ 294 (603)
.+.++|++.|... .+++++|.+...++.||.+.| ++.+ ++|+++|+++++|.++.+-.. .+ ++...
T Consensus 186 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~-g~~~~~~~~~ 261 (434)
T 2epj_A 186 PYNDVEALERVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL-GLEGAQGYFN 261 (434)
T ss_dssp ETTCHHHHHHHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTS-STTHHHHHHT
T ss_pred CCCCHHHHHHHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeC-CcchhhHHhC
Confidence 2678899888641 125788888777778999998 8755 589999999999999872110 11 11112
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
..+|++++ .|.||. ...+|++++++++++.+.+
T Consensus 262 ~~~di~s~--sK~l~~-G~~~G~v~~~~~~~~~l~~ 294 (434)
T 2epj_A 262 IEGDIIVL--GKIIGG-GFPVGAVAGSREVMSLLTP 294 (434)
T ss_dssp CCCSEEEE--EGGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred CCCCeeee--cchhcC-CcceeeeeecHHHHHhhcc
Confidence 45898754 598873 2348999999877665543
No 210
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.27 E-value=3.7e-10 Score=122.76 Aligned_cols=192 Identities=10% Similarity=0.027 Sum_probs=114.2
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+.-|||+.+. |.-++.+++++.+.+.... ++.. . .-..+...+.+++++
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~-----------------~~~~--~-----~~~~~~~~~la~~l~ 117 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFT-----------------HTCF--M-----VTPYEQYVQVAELLN 117 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS-----------------CCTT--T-----TSCCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcc-----------------cccc--C-----cCCCHHHHHHHHHHH
Confidence 56789999874 3348888888765432100 0000 0 001244567889999
Q ss_pred HHcCCC-CCcEEEecc-CchHHHHHHHHHH--cCCEEEE-----------------------------------EeccCC
Q 007454 181 DFLNIS-ENDYVYDYE-SEAVEAMIRTSEK--RGARVMS-----------------------------------AEFSWP 221 (603)
Q Consensus 181 ~~lna~-~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~-----------------------------------~~~~~~ 221 (603)
++++.+ +++++|+.. ++++...+..++. .+.+|.. +++..+
T Consensus 118 ~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (453)
T 4ffc_A 118 ALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYP 197 (453)
T ss_dssp HHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCT
T ss_pred HhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCcc
Confidence 999865 467777643 3566655555543 2233432 222210
Q ss_pred --c--cc-------cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CC
Q 007454 222 --R--LR-------INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GP 284 (603)
Q Consensus 222 --~--g~-------i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~ 284 (603)
+ +. .+.+.|++.+.. .++.+|.+...++..|.+.| ++.+ ++|+++|+++++|-++. .+
T Consensus 198 ~~~~~g~~~~~~~~~~~~~l~~~i~~-----~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 272 (453)
T 4ffc_A 198 LRDEPGLTGEEAARRAISRIETQIGA-----QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFA 272 (453)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHTCG-----GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ccCccccchHHHHHHHHHHHHHhcCC-----CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence 0 10 012344444432 25678888778888899888 7755 58999999999999876 22
Q ss_pred CC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 285 KD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 285 ~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
.. +..++.....+|++++| |.+|. .-.+|+++.++++++.+.+
T Consensus 273 ~~g~~~a~~~~~~~pdi~t~s--K~~~~-G~~~G~~~~~~~i~~~~~~ 317 (453)
T 4ffc_A 273 RTGAWFASEHEGIVPDIVTMA--KGIAG-GMPLSAVTGRAELMDAVYA 317 (453)
T ss_dssp TTSSSSTHHHHTCCCSEEEEC--GGGGT-TSSCEEEEEEHHHHTTSCT
T ss_pred cccccchhhhcCCCcchHhhh--hhhcC-CcCeEEEEECHHHHhhhcc
Confidence 21 11122223468998887 98873 3358999999887766654
No 211
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.27 E-value=9.1e-11 Score=122.14 Aligned_cols=142 Identities=13% Similarity=0.172 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHH--------------------------HcCCEEEEEeccCCccc
Q 007454 171 LESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSE--------------------------KRGARVMSAEFSWPRLR 224 (603)
Q Consensus 171 ~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~--------------------------~~Ga~V~~~~~~~~~g~ 224 (603)
...+.|++|++++|.+ ..+++..-+.++...+..+. ..|+++..++. .++.
T Consensus 48 ~~~~l~~~la~~~~~~-~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~ 124 (357)
T 3lws_A 48 IIEPFEQKFADVLGMD-DAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA--ADRL 124 (357)
T ss_dssp THHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC--TTSC
T ss_pred HHHHHHHHHHHHhCCC-cEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccCcEEEEecC--CCCC
Confidence 3467889999999984 34444322222222222222 23444544442 3456
Q ss_pred cCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-ccccc---HHHH-HHHHhCCcEEEEecccc------CCCCCCCCCCC
Q 007454 225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYP---YLWM-RIAQENDWHILIDACAL------GPKDMDSFGLS 293 (603)
Q Consensus 225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~p---l~~i-~~a~e~g~~vlvDAaq~------~~~~m~~ldls 293 (603)
++.++|+++. +++++.+...+|.| |.++| ++.+ ++|+++|++|++|.++. .+.. ..++.
T Consensus 125 ~d~~~l~~~~--------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~ 194 (357)
T 3lws_A 125 MTLDEIKALP--------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKT--AAEIA 194 (357)
T ss_dssp CCHHHHHTCC--------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--HHHHH
T ss_pred cCHHHHhcCc--------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCC--hHHHH
Confidence 7888887651 37899999999998 99998 4433 47899999999998764 1221 11111
Q ss_pred CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCc
Q 007454 294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 328 (603)
Q Consensus 294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L 328 (603)
..+|.+++|++|+||+ |.| |+++.++++++.+
T Consensus 195 -~~~d~~~~s~sK~~~~-~~g-g~~~~~~~~~~~~ 226 (357)
T 3lws_A 195 -GLFDSIYISFYKGLGG-IAG-AILAGPAAFCQTA 226 (357)
T ss_dssp -TTSSEEEEESSSTTCC-SSC-EEEEECHHHHHHH
T ss_pred -hcCCEEEEeccccCCC-Cce-EEEEcCHHHHHHH
Confidence 3579999999999955 888 8888877655433
No 212
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.26 E-value=1.3e-11 Score=133.55 Aligned_cols=274 Identities=13% Similarity=0.087 Sum_probs=165.3
Q ss_pred HHHHHHHHHHcC------CCCCcEEEeccC-chHHHHHHHH--------HHcCCEEEEEeccCCc--------------c
Q 007454 173 SAMKKRIMDFLN------ISENDYVYDYES-EAVEAMIRTS--------EKRGARVMSAEFSWPR--------------L 223 (603)
Q Consensus 173 ~~aR~~Ia~~ln------a~~~e~vf~~es-~sV~~~~~~a--------~~~Ga~V~~~~~~~~~--------------g 223 (603)
.+.|+.|+++++ +++++++++..+ +++..++... .+.|.+|......++. .
T Consensus 103 ~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~ 182 (427)
T 2hox_A 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW 182 (427)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE
T ss_pred HHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeee
Confidence 578889999887 678899887654 3555555555 4567666655443321 1
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS 303 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S 303 (603)
.++.++|++.+. ++++++.++..+|.||.++| +++ + +..++.|.+.+.++. ..+++. .+.|+++.|
T Consensus 183 ~~d~~~l~~~~~------~~~k~v~l~~p~NPtG~~~~-~~l---~--~~~~i~d~~~~~~~~-s~~~~~-~~~~i~~~S 248 (427)
T 2hox_A 183 AGNAANYVNVSN------PEQYIEMVTSPNNPEGLLRH-AVI---K--GCKSIYDMVYYWPHY-TPIKYK-ADEDILLFT 248 (427)
T ss_dssp EEEGGGGTTCSC------GGGEEEEEESSCTTTCCCCC-CSS---T--TCEEEEECTTCSTTT-SCCCSC-BCCSEEEEE
T ss_pred cCCHHHHHHhhc------CCceEEEEcCCCCCcccccH-HHH---c--CCCEEEeecccCCCC-CccccC-CCceEEEEe
Confidence 234455554443 35789999999999999999 633 3 457788877664321 113333 578999999
Q ss_pred ccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454 304 FYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM 380 (603)
Q Consensus 304 ~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~ 380 (603)
++|.|| +.| +|.++++ +++++.+.... .. ...+++.+...+
T Consensus 249 ~SK~~g--~~G~RiG~~~~~~~~l~~~l~~~~--------------------------------~~--~~~~~~~~~q~a 292 (427)
T 2hox_A 249 MSKFTG--HSGSRFGWALIKDESVYNNLLNYM--------------------------------TK--NTEGTPRETQLR 292 (427)
T ss_dssp HHHHTS--CGGGCCEEEEECCHHHHHHHHHHH--------------------------------HH--HTSSCCHHHHHH
T ss_pred ChhcCC--CCCceEEEEEECCHHHHHHHHHHH--------------------------------Hh--cCCCCCHHHHHH
Confidence 999999 558 8999995 55543333100 00 011222222222
Q ss_pred hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH------hcCHHHHHHHHHHHHHHHHHHHhc
Q 007454 381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD------SLGLTMISRRGRCLINWLVNALMK 454 (603)
Q Consensus 381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~------~iGl~~i~~r~~~L~~~L~~~L~~ 454 (603)
+.. .+. .+.++++ .--+....++++...++|.+.|.+
T Consensus 293 ~~~-------------~L~------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (427)
T 2hox_A 293 SLK-------------VLK------------------------EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ 335 (427)
T ss_dssp HHH-------------HHH------------------------HHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHH-------------Hhh------------------------cchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 111 1111111 001334556777788889999987
Q ss_pred CCCCCCCCCceEEE--eC-CCC-------CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhh
Q 007454 455 LQHPNTEGNALVKI--YG-PKI-------RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ 524 (603)
Q Consensus 455 L~h~~~~g~plv~I--yg-p~~-------~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~ 524 (603)
++ .+.+ ++ |.. ..+-+..+-+.+++ +.. +++.++++++||.++.|..|..
T Consensus 336 ~~--------g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~----~~~~~ll~~~gI~v~pg~~f~~------- 395 (427)
T 2hox_A 336 SD--------RFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EED----KDCYQTFQNGRINTQNGVGFEA------- 395 (427)
T ss_dssp SS--------SEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGG----CSHHHHHHHTTEECEEGGGGTS-------
T ss_pred Cc--------CccccccccccccccccccCCCCceEEEEECCC-cHH----HHHHHHHHHCCEEEcCCCccCC-------
Confidence 52 1444 32 210 11224455567754 221 2467777889999999876521
Q ss_pred hhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 525 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 525 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
..+.||+|++. +.|+++++++.|++++++
T Consensus 396 ----------------------------~~~~~Ris~~~--~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 396 ----------------------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp ----------------------------CTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred ----------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 12589999994 899999999999988754
No 213
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.25 E-value=1.1e-09 Score=118.87 Aligned_cols=196 Identities=11% Similarity=0.073 Sum_probs=115.1
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
++.-|||+.+. |.-++.+++++.+.+... .+.+.. .-..+...+.+++++
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~--------------------~~~~~~----~~~~~~~~~la~~l~ 114 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF--------------------THTCFM----VTPYEGYVAVCEQLN 114 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC--------------------SCCTTT----TSCCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc--------------------ccccCC----ccCCHHHHHHHHHHH
Confidence 56789999874 234788888877643211 000000 001234557888899
Q ss_pred HHcCCC-CCcEEEecc-CchHHHHHHHHHH-cC-CEEEEE-----------------------------------eccCC
Q 007454 181 DFLNIS-ENDYVYDYE-SEAVEAMIRTSEK-RG-ARVMSA-----------------------------------EFSWP 221 (603)
Q Consensus 181 ~~lna~-~~e~vf~~e-s~sV~~~~~~a~~-~G-a~V~~~-----------------------------------~~~~~ 221 (603)
++++.. +++++|+.. ++++...+..++. .| -+|... ++..+
T Consensus 115 ~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (451)
T 3oks_A 115 RLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYP 194 (451)
T ss_dssp HHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCH
T ss_pred HhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcc
Confidence 998765 456777643 3566655555553 23 344332 22100
Q ss_pred --c----------cccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-
Q 007454 222 --R----------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG- 283 (603)
Q Consensus 222 --~----------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~- 283 (603)
. +..+.+.+++.|... ....++.+|.+...++..|.+.| ++.+ ++|+++|+++++|-++.+
T Consensus 195 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~-~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 273 (451)
T 3oks_A 195 FRDAEFGKELATDGELAAKRAITVIDKQ-IGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF 273 (451)
T ss_dssp HHHGGGCTTTTTCHHHHHHHHHHHHHHH-TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred ccccccccccchhhHHHHHHHHHHHHhh-cCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 0 001233444444321 00135788888888888999888 8755 589999999999998762
Q ss_pred CCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 284 PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 284 ~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
+.. +..++.....+|.+++| |.+|. .-.+|+++.++++++.+.+
T Consensus 274 g~~g~~~~~~~~~~~pdi~t~s--K~l~~-G~~iG~v~~~~~~~~~~~~ 319 (451)
T 3oks_A 274 ARTGAMFACEHEGIDPDLIVTA--KGIAG-GLPLSAVTGRAEIMDSPHV 319 (451)
T ss_dssp TTTSSSSGGGGGTCCCSEEEEC--GGGGT-TSSCEEEEEEHHHHTCSCT
T ss_pred CccccchhhhhcCCCCCeeeeh--hhhhC-CcceEEEEECHHHHhhhcC
Confidence 221 11223233468988776 98873 3347999999887766654
No 214
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=98.90 E-value=6e-13 Score=141.03 Aligned_cols=119 Identities=11% Similarity=0.090 Sum_probs=79.2
Q ss_pred HHHcCCEEEEEeccCCcc--ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEec
Q 007454 206 SEKRGARVMSAEFSWPRL--RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDA 279 (603)
Q Consensus 206 a~~~Ga~V~~~~~~~~~g--~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDA 279 (603)
++..|+++..+++++.++ .++.++|++.|.. .+++++.++..+|.||.++| ++.+ ++|+++|+++++|.
T Consensus 130 ~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De 204 (392)
T 3b1d_A 130 VRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE-----NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDE 204 (392)
Confidence 344577777777643322 4788888888862 25788888999999999998 4433 47899999999999
Q ss_pred cccC----CCCCCC-CCCCC--CCCcEEEEcccccCCCCCCceEEEEEeCC-CCcCcC
Q 007454 280 CALG----PKDMDS-FGLSL--VRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILV 329 (603)
Q Consensus 280 aq~~----~~~m~~-ldls~--~~~Dflv~S~hK~fG~~P~G~G~L~vkk~-~~~~L~ 329 (603)
++.. +....+ ..+.. .+.++++.|++|.||.+...+|++++++. +++.+.
T Consensus 205 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 262 (392)
T 3b1d_A 205 IHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFK 262 (392)
Confidence 8654 210001 11211 34568999999999832123788888654 554443
No 215
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.24 E-value=9.7e-11 Score=126.32 Aligned_cols=113 Identities=12% Similarity=-0.009 Sum_probs=89.6
Q ss_pred HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeC----ccccccccccHHHH-HHHHh--CCcEEEEe
Q 007454 206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYLWM-RIAQE--NDWHILID 278 (603)
Q Consensus 206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~----~Sn~TG~~~pl~~i-~~a~e--~g~~vlvD 278 (603)
+++.|+++..++.++ ++.++.++|+++|.. +|+||.+.. .+|.||.+.|++.| ++|++ +|+++++|
T Consensus 129 l~~~G~~~~~v~~~~-~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD 201 (409)
T 3jzl_A 129 LKDFHIGYSSVPLLE-NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVD 201 (409)
T ss_dssp TGGGTCEEEECCCCT-TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHcCCEEEEeCCCC-CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEe
Confidence 456688999888874 788999999999863 689999999 99999999999865 58999 99999999
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcC
Q 007454 279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILV 329 (603)
Q Consensus 279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~ 329 (603)
.++..+. ...+...+++|+++.|+||++|+ + | .|+++.++++++.+.
T Consensus 202 ~a~~~~~--~~~~p~~~g~Div~~S~sK~lgg-~-~~~~GG~v~~~~~li~~l~ 251 (409)
T 3jzl_A 202 NCYGEFV--EYQEPPEVGADIIAGSLIKNPGG-G-LAKTGGYIAGKEALVDLCG 251 (409)
T ss_dssp CTTCTTT--SSCCSGGGTCSEEEEETTSGGGT-T-TCSSCEEEEECHHHHHHHH
T ss_pred CCccccc--ccCCccccCCeEEEECccccCCc-c-CCceEEEEEeCHHHHHHHH
Confidence 9976664 12233346899999999999983 2 2 388888877665444
No 216
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.24 E-value=3.3e-10 Score=129.92 Aligned_cols=208 Identities=10% Similarity=0.025 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEecc----------------------CchHHHHHHHHHHcCCEEEEEeccCCcc----
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYE----------------------SEAVEAMIRTSEKRGARVMSAEFSWPRL---- 223 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~e----------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g---- 223 (603)
..+.++++++|+++|++. .+++... .+....+...++..|+++++++.++.+.
T Consensus 195 g~i~eaE~~lA~~fGa~~-a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~ 273 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADR-SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILG 273 (715)
T ss_dssp THHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCBC
T ss_pred HHHHHHHHHHHHHhCCCC-ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccccccccc
Confidence 567899999999999953 3333211 1112223344566799999988754321
Q ss_pred cc-----CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCC--CCCCC
Q 007454 224 RI-----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSF--GLSLV 295 (603)
Q Consensus 224 ~i-----~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~l--dls~~ 295 (603)
.+ +.++|+++|....+ .+.+++++++.. |.+|.++|++.|. +|+.+ .+++|.|+..+-...+. +.+.+
T Consensus 274 ~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDEAH~~~~~f~~~~~~~~al 349 (715)
T 3n75_A 274 GIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDSAWVPYTNFSPIYEGKCGM 349 (715)
T ss_dssp CCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEECTTCTTGGGSGGGTTSSTT
T ss_pred CcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEccccccccccCCcccccccc
Confidence 23 89999999985311 112347777776 8999999999664 67655 37899987644100111 12211
Q ss_pred ----CCcEE---EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccc
Q 007454 296 ----RPDFL---ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE 368 (603)
Q Consensus 296 ----~~Dfl---v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 368 (603)
++|++ +.|+||.+|+ |++.|.|.++++.. ... + ... ...
T Consensus 350 ~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~--~~~------~------~~~-----------------~~~-- 395 (715)
T 3n75_A 350 SGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVN--EET------F------NEA-----------------YMM-- 395 (715)
T ss_dssp SSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCC--HHH------H------HHH-----------------HHH--
T ss_pred ccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhh--HHH------H------HHH-----------------HHh--
Confidence 26876 9999999887 88999999987631 000 0 000 011
Q ss_pred cccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007454 369 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 448 (603)
Q Consensus 369 ~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L 448 (603)
+.++++++++++++. .|++++....-....+++..++.++
T Consensus 396 ~~STSpsy~~~Asld----------------------------------------aA~~~~~~~~g~~~~~~l~~~a~~~ 435 (715)
T 3n75_A 396 HTTTSPHYGIVASTE----------------------------------------TAAAMMKGNAGKRLINGSIERAIKF 435 (715)
T ss_dssp TSCSSCCHHHHHHHH----------------------------------------HHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCchHHHHHHHH----------------------------------------HHHHHHHhhccHHHHHHHHHHHHHH
Confidence 457889999887775 5777765322244667888899999
Q ss_pred HHHHhcCC
Q 007454 449 VNALMKLQ 456 (603)
Q Consensus 449 ~~~L~~L~ 456 (603)
+++|.+++
T Consensus 436 r~~L~~i~ 443 (715)
T 3n75_A 436 RKEIKRLR 443 (715)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998764
No 217
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.24 E-value=1e-10 Score=130.08 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=79.6
Q ss_pred HHcCCEEEEEeccC---CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHH-hCCcEEEEe
Q 007454 207 EKRGARVMSAEFSW---PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQ-ENDWHILID 278 (603)
Q Consensus 207 ~~~Ga~V~~~~~~~---~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~-e~g~~vlvD 278 (603)
+..|+++..++++. .+..++.++|++.+. +++++|.+...+|.||.++|.+.+ ++|+ ++|+++++|
T Consensus 211 ~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~D 284 (533)
T 3f6t_A 211 ELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD------PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISD 284 (533)
T ss_dssp GGGGSEEEEECCCEETTTTSEECHHHHHHHSC------TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHcCCeEEEEEecCCcccCCCCCHHHHHHHhC------CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEc
Confidence 34577777777642 346789999999885 368999998999999999999732 3566 589999999
Q ss_pred ccccCCCCCCCCCCCC--CCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 007454 279 ACALGPKDMDSFGLSL--VRPDFLICSFYQIFGENPSG--FGCLFVKKS 323 (603)
Q Consensus 279 Aaq~~~~~m~~ldls~--~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~ 323 (603)
.++..-.. ....+.. .+.++++.|++|.|| +.| +|+++++++
T Consensus 285 e~y~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g--~~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 285 EVYGAFVP-NFKSIYSVVPYNTMLVYSYSKLFG--CTGWRLGVIALNEK 330 (533)
T ss_dssp CTTGGGST-TCCCHHHHSGGGEEEEEESHHHHT--CGGGCEEEEEEESS
T ss_pred CCcccccc-CccCHhhcCCCCEEEEecCcccCC--CcccceEEEEECcH
Confidence 98653210 1111111 234599999999999 669 899999987
No 218
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.22 E-value=1.3e-10 Score=120.98 Aligned_cols=146 Identities=13% Similarity=0.140 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHH--------------------------HHHcCCEEEEEeccCCcc
Q 007454 170 GLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRT--------------------------SEKRGARVMSAEFSWPRL 223 (603)
Q Consensus 170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~--------------------------a~~~Ga~V~~~~~~~~~g 223 (603)
...++.|++|++++|.+.. +++..-++++...+.. +...|+++..++. +++
T Consensus 48 ~~~~~l~~~la~~~~~~~~-i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~ 124 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQSA-VFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT--ANQ 124 (359)
T ss_dssp HHHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC--TTS
T ss_pred HHHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC--cCC
Confidence 3467899999999998543 4332111122111111 1234667766665 356
Q ss_pred ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccHHHH----HHHHhCCcEEEEeccccCCC----CCCCCCCCC
Q 007454 224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYLWM----RIAQENDWHILIDACALGPK----DMDSFGLSL 294 (603)
Q Consensus 224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl~~i----~~a~e~g~~vlvDAaq~~~~----~m~~ldls~ 294 (603)
.++.++|+++ . +++++|.+...+|.+ |..+|.+.+ ++|+++|+++++|.++..+. .....++.
T Consensus 125 ~~d~~~l~~~-~------~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~- 196 (359)
T 3pj0_A 125 LLTIDDIKSL-R------EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC- 196 (359)
T ss_dssp CCCHHHHHTC-S------SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH-
T ss_pred CcCHHHHHhc-c------CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh-
Confidence 7889888876 2 368899887777777 799998754 46899999999998865321 00011122
Q ss_pred CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCc
Q 007454 295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 328 (603)
Q Consensus 295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L 328 (603)
.++|++++|+||+||. |.| |+++.++++++.+
T Consensus 197 ~~~d~~~~s~sK~~~~-~~g-g~~~~~~~l~~~~ 228 (359)
T 3pj0_A 197 ALFDSVYVSFYKGIGG-IAG-AILAGNDDFVQEA 228 (359)
T ss_dssp TTCSEEEEESSSTTCC-SSC-EEEEECHHHHHHH
T ss_pred ccCCEEEEeccccCCC-cce-EEEECCHHHHHHH
Confidence 3689999999998876 766 7777777665444
No 219
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.19 E-value=1.8e-09 Score=119.12 Aligned_cols=263 Identities=14% Similarity=0.079 Sum_probs=152.5
Q ss_pred HHHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEe
Q 007454 204 RTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILID 278 (603)
Q Consensus 204 ~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvD 278 (603)
..++..|+++..++.+.. +..++.++|++.|...+. ..+++++++...+|.||.++|.+. +++|+++|+++++|
T Consensus 196 ~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~D 274 (498)
T 3ihj_A 196 AVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD 274 (498)
T ss_dssp HHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEE
Confidence 344556777777777522 236899999999975321 125889999899999999999763 34689999999999
Q ss_pred ccccCCC-C--CCCCCCCC----C------CCc-EEEEcccccC-CCCCCceEEEEE---eCCCCcCcCCCCCCCceecc
Q 007454 279 ACALGPK-D--MDSFGLSL----V------RPD-FLICSFYQIF-GENPSGFGCLFV---KKSTVPILVDNTSSGMVSLL 340 (603)
Q Consensus 279 Aaq~~~~-~--m~~ldls~----~------~~D-flv~S~hK~f-G~~P~G~G~L~v---kk~~~~~L~p~~~gG~v~~~ 340 (603)
.+..... + -....+.. + .+. +++.|++|.| |.+-..+|.+.+ .+.+.+.+...
T Consensus 275 e~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~--------- 345 (498)
T 3ihj_A 275 EVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKL--------- 345 (498)
T ss_dssp CTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHH---------
T ss_pred cCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHH---------
Confidence 9754321 0 00111111 1 122 5667999998 732123566654 22222212100
Q ss_pred ccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCch
Q 007454 341 PAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSE 420 (603)
Q Consensus 341 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (603)
. -...+++.++..++.. .+. ++..+..
T Consensus 346 ------~---------------------~~~~~~~~~~q~a~~~------------~l~-------------~~~~g~~- 372 (498)
T 3ihj_A 346 ------L---------------------SVRLCPPVSGQAAMDI------------VVN-------------PPVAGEE- 372 (498)
T ss_dssp ------H---------------------HHSCCCCHHHHHHHHH------------HTC-------------CCCTTST-
T ss_pred ------H---------------------hccCCCCHHHHHHHHH------------Hhc-------------CCccCcc-
Confidence 0 0012234444433321 000 0000000
Q ss_pred hHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE-EEccCCC-------C
Q 007454 421 IECRGL-DQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF-NVFDWKR-------E 491 (603)
Q Consensus 421 ~~~~al-d~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF-nv~~~~g-------~ 491 (603)
.+ +++.. +..+.++++..++++.+.|.+++ .++++.| .++.+.| .+..... .
T Consensus 373 ----~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~~--------g~~~~~p-----~gg~~~~~~l~~p~~~~~~~~~~ 433 (498)
T 3ihj_A 373 ----SFEQFSRE--KESVLGNLAKKAKLTEDLFNQVP--------GIHCNPL-----QGAMYAFPRIFIPAKAVEAAQAH 433 (498)
T ss_dssp ----THHHHHHH--HHHHHHHHHHHHHHHHHHHHTST--------TEECCCC-----CBSSEECCEECCCHHHHHHHHHT
T ss_pred ----cHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC--------CcEecCC-----CeEEEEEEeccCchhhhHHHHhc
Confidence 11 12221 35666778888899999998752 2666654 3555555 3431100 0
Q ss_pred ccCHHH--HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHH
Q 007454 492 KIEPVL--VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFED 569 (603)
Q Consensus 492 ~v~~~~--V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eD 569 (603)
-+.+.. +.++++++||.++.|..|... .+.+.+|+|++ .+.+|
T Consensus 434 g~~~~~~~~~~ll~~~gI~v~pG~~f~~~---------------------------------~~~~~~Ris~~--~~~e~ 478 (498)
T 3ihj_A 434 QMAPDMFYCMKLLEETGICVVPGSGFGQR---------------------------------EGTYHFRMTIL--PPVEK 478 (498)
T ss_dssp TSCHHHHHHHHHHHHHCBCCEEGGGTCCC---------------------------------TTCCBEEEECC--SCHHH
T ss_pred CCCcHHHHHHHHHHHCCEEEEeCcccCCC---------------------------------CCCCEEEEEeC--CCHHH
Confidence 023333 577888899999998776431 11258999995 89999
Q ss_pred HHHHHHHHHHHHhh
Q 007454 570 VYRLWAFVAQFLDA 583 (603)
Q Consensus 570 Vd~l~~~l~~~l~~ 583 (603)
++++++.|++++..
T Consensus 479 l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 479 LKTVLQKVKDFHIN 492 (498)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 220
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.16 E-value=8.6e-10 Score=119.59 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=112.2
Q ss_pred CccccccchHHHHHHHHHHHHHHHcCCCCCcEE---Eecc-------------------------CchHHHHH-------
Q 007454 159 KTQLLHGGQESGLESAMKKRIMDFLNISENDYV---YDYE-------------------------SEAVEAMI------- 203 (603)
Q Consensus 159 ~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~v---f~~e-------------------------s~sV~~~~------- 203 (603)
++.+.|+... .++.++++++++|++.. ++ |..- +.....+.
T Consensus 65 ~~gy~y~~~~---~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~ 140 (427)
T 3i16_A 65 SSGYGYGDIG---RDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSN 140 (427)
T ss_dssp CCTTCTTCHH---HHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCS
T ss_pred CCCCCCCHHH---HHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccch
Confidence 4455555443 45677889999998654 55 3211 11111122
Q ss_pred -HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeC----ccccccccccHHHH-HHHHh--CCcEE
Q 007454 204 -RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYLWM-RIAQE--NDWHI 275 (603)
Q Consensus 204 -~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~----~Sn~TG~~~pl~~i-~~a~e--~g~~v 275 (603)
..+++.|++++.++.+ +++.+|.++|+++|.. .++|+||.+.. .+|.||.+.|++.| ++|++ +|+++
T Consensus 141 ~~~l~~~G~~~~~v~~~-~~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~l 215 (427)
T 3i16_A 141 MGSLKEFGINYKQVDLK-EDGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIIC 215 (427)
T ss_dssp SCCTGGGTCEEEECCCC-TTSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHcCCEEEEecCc-cCCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEE
Confidence 2344568888888887 4688999999999972 12689999998 89999999999865 58999 99999
Q ss_pred EEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC--CceEEEEEeCCCCcCcC
Q 007454 276 LIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP--SGFGCLFVKKSTVPILV 329 (603)
Q Consensus 276 lvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P--~G~G~L~vkk~~~~~L~ 329 (603)
++|.++..+. ...+.-.+++|+++.|+||+||+ + ...|+++.++++++.+.
T Consensus 216 ivD~a~~~~~--~~~~p~~~gaDiv~~S~sK~lgg-~g~~~gG~i~~~~~li~~l~ 268 (427)
T 3i16_A 216 FVDNCYGEFM--DTKEPTDVGADLIAGSLIKNIGG-GIAPTGGYLAGTKDCIEKTS 268 (427)
T ss_dssp EEECTTTTTS--SSSCGGGGTCSEEEEETTSGGGT-TTCCSCEEEEECHHHHHHHH
T ss_pred EEECCCcccc--ccCCccccCCeEEEecCcccCCC-CCCceEEEEEECHHHHHHHH
Confidence 9999987664 12222246899999999999983 1 23488888887765554
No 221
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.15 E-value=7.8e-10 Score=119.91 Aligned_cols=194 Identities=11% Similarity=0.132 Sum_probs=129.7
Q ss_pred HHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHH
Q 007454 94 DQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES 173 (603)
Q Consensus 94 d~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~ 173 (603)
.++|+ +|+++ ...+++++ ..|++++.+..... .+.++ .+.+.|+... .+
T Consensus 29 ~~~~~-~~~~~--~~i~~~n~-------~~Vl~a~~~~~~~~-----------------~~~~~-~~gy~Y~~~g---~~ 77 (427)
T 3hvy_A 29 NDVEK-EFKYY--DEIREYNQ-------LKVLKAFQEERISE-----------------SHFTN-SSGYGYNDIG---RD 77 (427)
T ss_dssp HHHHH-HHHHH--HHHHHHHH-------HHHHHHHHHTTCCG-----------------GGSCC-CCTTCTTCHH---HH
T ss_pred HHHHH-HHHHH--HHHHHhhH-------HHHHHHHHHHHHHH-----------------Hhccc-CcCCCCCchh---HH
Confidence 45555 58888 56778776 67888877643210 01122 2333344332 56
Q ss_pred HHHHHHHHHcCCCCCcEE---EeccCch-------------------------HHHHH--------HHHHHcCCEEEEEe
Q 007454 174 AMKKRIMDFLNISENDYV---YDYESEA-------------------------VEAMI--------RTSEKRGARVMSAE 217 (603)
Q Consensus 174 ~aR~~Ia~~lna~~~e~v---f~~es~s-------------------------V~~~~--------~~a~~~Ga~V~~~~ 217 (603)
+.++++++++|++.. ++ |..-+++ ...+. ..+++.|++++.++
T Consensus 78 ~Le~~lA~l~g~e~a-lv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~ 156 (427)
T 3hvy_A 78 SLDRVYANIFNTESA-FVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVD 156 (427)
T ss_dssp HHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECC
T ss_pred HHHHHHHHHhCCCce-EEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEec
Confidence 778899999998654 55 2211111 11111 22345688888777
Q ss_pred ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeC----ccccccccccHHHH-HHHHh--CCcEEEEeccccCCC-CCCC
Q 007454 218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYLWM-RIAQE--NDWHILIDACALGPK-DMDS 289 (603)
Q Consensus 218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~----~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~~~~-~m~~ 289 (603)
. .++.+|.++|+++|... ++|+||.+.. .+|.||.+.|++.+ ++|++ +|+++++|.+...+. ...+
T Consensus 157 ~--~~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p 230 (427)
T 3hvy_A 157 L--KDGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEP 230 (427)
T ss_dssp C--BTTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG
T ss_pred C--CCCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCC
Confidence 6 36789999999999731 2689999999 89999999999855 58999 899999999876664 1123
Q ss_pred CCCCCCCCcEEEEcccccCCCC--CCceEEEEEeCCCCcCcC
Q 007454 290 FGLSLVRPDFLICSFYQIFGEN--PSGFGCLFVKKSTVPILV 329 (603)
Q Consensus 290 ldls~~~~Dflv~S~hK~fG~~--P~G~G~L~vkk~~~~~L~ 329 (603)
+ .+++|+++.|+||++|+. |.| |+++.++++++.+.
T Consensus 231 ~---~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~~~li~~l~ 268 (427)
T 3hvy_A 231 T---DVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQAT 268 (427)
T ss_dssp G---GGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHHHH
T ss_pred c---ccCCeEEEECCcccccccccceE-EEEEECHHHHHHHH
Confidence 3 357899999999999831 233 88888877665554
No 222
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.12 E-value=4.6e-09 Score=113.58 Aligned_cols=190 Identities=16% Similarity=0.104 Sum_probs=114.4
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|+++. ++.++.+++++.+.+.. +. + ++. ..+..++..+.++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~---------------------~~-~----~~~-~~~~~~~la~~l~ 107 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH---------------------GV-Q----YAA-SHPLEVRWAERIV 107 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTT---------------------TC-S----SCS-SCHHHHHHHHHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHh---------------------CC-C----CCC-CCHHHHHHHHHHH
Confidence 45679999655 34578888887764321 00 0 011 2245567777777
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEeccCC-------------------ccc-------------c
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEFSWP-------------------RLR-------------I 225 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~~~~-------------------~g~-------------i 225 (603)
+.++ .+++++|... ++++...+..++ ..+.+|...+..++ .+. .
T Consensus 108 ~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 186 (453)
T 2cy8_A 108 AAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPD 186 (453)
T ss_dssp HHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECTT
T ss_pred hhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCC
Confidence 7776 5677777643 245554445432 12234444432111 010 2
Q ss_pred CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCC--CCCCCCCCCCCc
Q 007454 226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKD--MDSFGLSLVRPD 298 (603)
Q Consensus 226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~D 298 (603)
+.++|++.|... .+++++|.+....|.||.+.| ++.+ ++|+++|+++++|.++.+-.. +..++.-...+|
T Consensus 187 d~~~le~~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~d 263 (453)
T 2cy8_A 187 DIEGMREVFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPD 263 (453)
T ss_dssp CHHHHHHHHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCS
T ss_pred CHHHHHHHHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCc
Confidence 678898888631 125788888666677999988 8755 589999999999999862110 001111124589
Q ss_pred EEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
++++ -|.||. +..+|++++++++++.+.+
T Consensus 264 i~s~--sK~l~~-G~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 264 LTCL--AKASAG-GLPGGILGGREDVMGVLSR 292 (453)
T ss_dssp EEEE--EGGGGT-TSSCEEEEECHHHHTTSSS
T ss_pred EEEE--ChhhhC-CcceEEEechHHHHHHhcc
Confidence 8755 499873 3468999999887665553
No 223
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.11 E-value=3.5e-09 Score=113.40 Aligned_cols=189 Identities=15% Similarity=0.162 Sum_probs=116.7
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
.+..|+|.++. ++.++.+++++.+.+.. +. + ++. ..+...+.+++++
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~---------------------~~-~----~~~-~~~~~~~l~~~l~ 102 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLER---------------------GL-T----FGA-PSPLEVALAKKVK 102 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT---------------------CS-C----CSS-CCHHHHHHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHh---------------------CC-C----CCC-CCHHHHHHHHHHH
Confidence 45679998854 34578899987764321 00 0 011 2345568889999
Q ss_pred HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEeccCCc----------------------c-------c----
Q 007454 181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEFSWPR----------------------L-------R---- 224 (603)
Q Consensus 181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~~~~~----------------------g-------~---- 224 (603)
++++ .+++++|... ++++...+..++ ..+.+|...+..++. + .
T Consensus 103 ~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~ 181 (424)
T 2e7u_A 103 RAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVL 181 (424)
T ss_dssp HHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEE
T ss_pred HhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeC
Confidence 9987 6677777653 345655555432 234455554322210 1 0
Q ss_pred --cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCC-C-CCCCCCCCC
Q 007454 225 --INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPK-D-MDSFGLSLV 295 (603)
Q Consensus 225 --i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~-~-m~~ldls~~ 295 (603)
.+.++|++.|... .+++++|.+...++.||.+.| ++.+ ++ +++|+++++|-++.+=. . +..++....
T Consensus 182 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~ 257 (424)
T 2e7u_A 182 EYNDPEGLREVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGL 257 (424)
T ss_dssp CTTCHHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTC
T ss_pred CCCCHHHHHHHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCC
Confidence 2688899888631 125677777666666999988 8755 47 89999999999987211 0 001111123
Q ss_pred CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
.+|++ |+.|.||. ...+|++++++++++.+.+
T Consensus 258 ~~di~--s~sK~l~~-G~~~G~~~~~~~~~~~~~~ 289 (424)
T 2e7u_A 258 KPDLV--TLGKILGG-GLPAAAYAGRREIMEKVAP 289 (424)
T ss_dssp CCSEE--EECGGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred Ccchh--hhhhhhhC-CcceEEEEEcHHHHhhhcc
Confidence 58976 55699883 3458999999887665553
No 224
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.03 E-value=3.5e-09 Score=114.86 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=86.9
Q ss_pred HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeC----ccccccccccHHHH-HHHHh--CCcEEEEe
Q 007454 206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYLWM-RIAQE--NDWHILID 278 (603)
Q Consensus 206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~----~Sn~TG~~~pl~~i-~~a~e--~g~~vlvD 278 (603)
+++.|++++.+++++ ++.+|.++|+++|.. +|++|.+.. .++.+|.+.|++.+ ++|++ +|+++++|
T Consensus 135 ~~~~G~~~~~v~~~~-~~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livD 207 (431)
T 3ht4_A 135 FKEYNIGYNAVPLTE-GGLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVD 207 (431)
T ss_dssp SGGGTCEEEECCBCT-TSSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHcCCEEEEeCCCC-CCCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 345789999999875 688999999999863 689999986 55666666677644 57899 99999999
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEcccccCCC--CCCceEEEEEeCCCCcCcC
Q 007454 279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGE--NPSGFGCLFVKKSTVPILV 329 (603)
Q Consensus 279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~--~P~G~G~L~vkk~~~~~L~ 329 (603)
.++..+. ...+...+++|+++.|++|++|+ .|.| |+++.++++++.+.
T Consensus 208 ea~~~~~--~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~ 257 (431)
T 3ht4_A 208 NCYGEFI--EEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACA 257 (431)
T ss_dssp CTTCTTS--SSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHH
T ss_pred CCChhhc--cCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHH
Confidence 9987765 22333345799999999998542 1677 99999887665554
No 225
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.03 E-value=3.2e-09 Score=112.87 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=76.2
Q ss_pred HHHHHHcCCEEEEEecc-CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEE
Q 007454 203 IRTSEKRGARVMSAEFS-WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILI 277 (603)
Q Consensus 203 ~~~a~~~Ga~V~~~~~~-~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlv 277 (603)
...++..|+++..+++. ..+..++.++|++.|... .+++.+++++..+|.||.++|.+. + ++|+++|+++++
T Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 221 (409)
T 4eu1_A 145 ESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFV 221 (409)
T ss_dssp HHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 34556679999988873 135678999999999742 125788888999999999999763 3 468999999999
Q ss_pred ecccc-CCCC-----CCCC-CC-CCCCCcEEEEcccccCCCCCCc--eEEE
Q 007454 278 DACAL-GPKD-----MDSF-GL-SLVRPDFLICSFYQIFGENPSG--FGCL 318 (603)
Q Consensus 278 DAaq~-~~~~-----m~~l-dl-s~~~~Dflv~S~hK~fG~~P~G--~G~L 318 (603)
|.+.. +... ..++ .+ ....-.+++.|+.|.|| ..| +|++
T Consensus 222 De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g--~~G~riG~~ 270 (409)
T 4eu1_A 222 DMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG--LYGHRCGAL 270 (409)
T ss_dssp EESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS--CGGGCCEEE
T ss_pred eccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc--CccCCceEE
Confidence 98733 2210 0001 01 11223367778999999 447 6776
No 226
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=98.86 E-value=1.2e-08 Score=111.01 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=81.1
Q ss_pred HHHHHHHcCCEEEEEecc--CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEe
Q 007454 202 MIRTSEKRGARVMSAEFS--WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILID 278 (603)
Q Consensus 202 ~~~~a~~~Ga~V~~~~~~--~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvD 278 (603)
+...+.-.|++.++++.. ...+.++.++|+++|...+ ...+.+|+.+.-.+-+|..-|++.| ++||++|+++|||
T Consensus 157 v~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~--~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD 234 (450)
T 3bc8_A 157 CFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN 234 (450)
T ss_dssp HHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcC--CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEE
Confidence 334444457777777652 1367899999999997632 1245555555555556789999966 5899999999999
Q ss_pred ccccCCCCCCCCC--C--CC---CCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454 279 ACALGPKDMDSFG--L--SL---VRPDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 279 Aaq~~~~~m~~ld--l--s~---~~~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
+|.. ++ ..+- + +. -++|++++|.|||++. |+|.++|++|+
T Consensus 235 ~A~G-~~--~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a-~~~~~~l~~rd 281 (450)
T 3bc8_A 235 NAYG-LQ--SSKCMHLIQQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFN 281 (450)
T ss_dssp CTTT-TT--CHHHHHHHHHHHHHSCCCEEEEEHHHHHSC-CSSCEEEEESC
T ss_pred CCCc-hh--hhhhHhHHHHHhcccCCCEEEECCccCCCc-hhccEEEEecC
Confidence 8644 33 1111 1 11 2799999999999887 99999999973
No 227
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=98.69 E-value=2e-07 Score=103.94 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=79.1
Q ss_pred HcCCEEEEEeccCCc-cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHH--HhCCcEEEEecc
Q 007454 208 KRGARVMSAEFSWPR-LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIA--QENDWHILIDAC 280 (603)
Q Consensus 208 ~~Ga~V~~~~~~~~~-g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a--~e~g~~vlvDAa 280 (603)
..|+++..++.+..+ ..++.++|++.+. ++++++.+..-+|.||.++|.+. ++.| +++|+++++|.+
T Consensus 215 ~~g~~~~~v~~~~~~~~~~d~~~l~~~~~------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~ 288 (546)
T 2zy4_A 215 QYALEEVAINADPSLNWQYPDSELDKLKD------PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDV 288 (546)
T ss_dssp TSCCEEEEEECBGGGTTBCCHHHHGGGGS------TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECT
T ss_pred CCCcEEEEEecCcccCCCCCHHHHHHhhC------CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCc
Confidence 347888888875322 3488898887663 36889888899999999999763 3456 788999999998
Q ss_pred ccCCCCCCCCCCCC--CCCcEEEEcccccCCCCCCc--eEEEEEeCC-CCcC
Q 007454 281 ALGPKDMDSFGLSL--VRPDFLICSFYQIFGENPSG--FGCLFVKKS-TVPI 327 (603)
Q Consensus 281 q~~~~~m~~ldls~--~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~-~~~~ 327 (603)
...... ....+.. .+.++++.|+.|.|| ..| +|++++.+. +++.
T Consensus 289 y~~~~~-~~~s~~~~~~~~~i~~~S~SK~~g--~~GlRiG~~~~~~~~l~~~ 337 (546)
T 2zy4_A 289 YGTFAD-DFQSLFAICPENTLLVYSFSKYFG--ATGWRLGVVAAHQQNVFDL 337 (546)
T ss_dssp TGGGST-TCCCHHHHCGGGEEEEEESTTTTT--CGGGCEEEEEEESSCHHHH
T ss_pred chhhcc-cCcCHHHhCCCCEEEEEeCccccC--CCCcceEEEEECCHHHHHH
Confidence 653221 1122211 135799999999999 458 799999886 4433
No 228
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.64 E-value=5.6e-06 Score=89.44 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=123.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhCCCCCCchhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCC
Q 007454 60 PDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSL 139 (603)
Q Consensus 60 ~~~~~~~~~~lp~l~~~~~~F~~~~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~ 139 (603)
++..|+..++|...+....+.++ -+.-|+ --+|. .| |+-...|+.|++++-..+++-
T Consensus 25 ~~~~~~~~~~l~~~Dpei~~~i~----------~E~~RQ--~~~ie---LI----ASEN~~S~aV~~a~gS~ltnK---- 81 (490)
T 3ou5_A 25 ANRGWTGQESLSDSDPEMWELLQ----------REKDRQ--CRGLE---LI----ASENFCSRAALEALGSCLNNK---- 81 (490)
T ss_dssp ---CCSSCCCHHHHCHHHHHHHH----------HHHHHH--HHSEE---CC----TTCCCCCHHHHHHHTSGGGTC----
T ss_pred cccccccccchhhhCHHHHHHHH----------HHHHHH--HcCce---Ee----cCCCcCCHHHHHHhcCccccc----
Confidence 34567777888665433322222 122333 23331 22 555678999999987655431
Q ss_pred CCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe--ccCchHHHH--HHHHHH------
Q 007454 140 PSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD--YESEAVEAM--IRTSEK------ 208 (603)
Q Consensus 140 p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~--~es~sV~~~--~~~a~~------ 208 (603)
|.-+-|...+.-|.. ..+++.-++++..++||++..+|-.. ..|.+..-+ ..+.-+
T Consensus 82 -------------YaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~il 148 (490)
T 3ou5_A 82 -------------YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIM 148 (490)
T ss_dssp -------------CCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEE
T ss_pred -------------ccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEE
Confidence 122445444332332 46788889999999999998865211 111111000 000001
Q ss_pred -------------------------cCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH
Q 007454 209 -------------------------RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL 263 (603)
Q Consensus 209 -------------------------~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~ 263 (603)
+-+++...+++..++.||.++++++.... +++|+++-+..+ =...|++
T Consensus 149 g~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~-----kPklIi~G~SaY--~r~id~~ 221 (490)
T 3ou5_A 149 GLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF-----RPRLIIAGTSAY--ARLIDYA 221 (490)
T ss_dssp CBC----------------------------CBCEETTTTEECHHHHHHHHHHH-----CCSEEEECCSSC--CSCCCHH
T ss_pred ecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhc-----CCCeEEECCccC--ccccCHH
Confidence 11233333455567899999999988753 578888776443 2467888
Q ss_pred HHH-HHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454 264 WMR-IAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST 324 (603)
Q Consensus 264 ~i~-~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~ 324 (603)
.++ +|.+.|+++++|+++..|- -..||+ .+|+++.|-||-|.+ |. -|+++.|++.
T Consensus 222 ~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADvVTtTTHKTLrG-Pr-GG~Il~~~~~ 282 (490)
T 3ou5_A 222 RMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG-AR-SGLIFYRKGV 282 (490)
T ss_dssp HHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSSTTCS-CS-CEEEEEECSE
T ss_pred HHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceEEeccccccccC-CC-ceEEEecccc
Confidence 776 7999999999999765431 113553 389999999998776 76 3777777764
No 229
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=98.43 E-value=2.7e-06 Score=92.18 Aligned_cols=107 Identities=17% Similarity=0.069 Sum_probs=70.6
Q ss_pred cCCEEEEEec--cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccc-ccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454 209 RGARVMSAEF--SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRM-TGARYPYLWM-RIAQENDWHILIDACALGP 284 (603)
Q Consensus 209 ~Ga~V~~~~~--~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~-TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~ 284 (603)
.|++.++++. ++..+.++.++|+++|... .....+++++..++. .|..-|++.| ++||++|++++||.| .++
T Consensus 182 ~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeA-hGa 257 (501)
T 3hl2_A 182 AGFEPVVIENVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNA-YGV 257 (501)
T ss_dssp TTCEEEEECEEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECT-TCT
T ss_pred cCCeEEEEeeeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCc-chh
Confidence 3566666654 2235788999999999853 112344444444333 4566899966 589999999999975 444
Q ss_pred CCCCCCC--C--C--CCC-CcEEEEcccccCCCCCCceEEEEEeC
Q 007454 285 KDMDSFG--L--S--LVR-PDFLICSFYQIFGENPSGFGCLFVKK 322 (603)
Q Consensus 285 ~~m~~ld--l--s--~~~-~Dflv~S~hK~fG~~P~G~G~L~vkk 322 (603)
| ..+. + + ..+ +|+++.|.||++-- |.|-|+++.++
T Consensus 258 h--~~~~~~lp~sA~~~GrAD~vVqS~HK~llv-pIGG~ii~~~d 299 (501)
T 3hl2_A 258 Q--SSKCMHLIQQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFN 299 (501)
T ss_dssp T--CHHHHHHHHHHHHHSCCCEEEEEHHHHHCC-CSSCEEEEESC
T ss_pred h--hhhhhhhHHHHHhcCCCcEEEeccccccee-ecCceEEEeCC
Confidence 4 1111 0 1 134 99999999998665 88866666665
No 230
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=98.40 E-value=2.2e-05 Score=85.56 Aligned_cols=188 Identities=11% Similarity=0.097 Sum_probs=107.5
Q ss_pred CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454 107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM 180 (603)
Q Consensus 107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia 180 (603)
++.-|||+.+. |--.+.+++++.+.+... + ..+.++ ....+.-++|+
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~--------~---------~~~~~~----------~~~~~lae~l~ 137 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGG--------I---------NLTGHN----------LLEGRLARLIC 137 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTC--------S---------CCCSEE----------SSHHHHHHHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcC--------C---------CccCCc----------HHHHHHHHHHH
Confidence 67889999764 334678888876533210 0 001111 11224455677
Q ss_pred HHcCCCCCcEEEec-cCchHHHHHHHHHHc--CCEEEEEeccC------------Cc---------cccCHHHHHHHHhh
Q 007454 181 DFLNISENDYVYDY-ESEAVEAMIRTSEKR--GARVMSAEFSW------------PR---------LRINSEKLRKMVVS 236 (603)
Q Consensus 181 ~~lna~~~e~vf~~-es~sV~~~~~~a~~~--Ga~V~~~~~~~------------~~---------g~i~~~~L~~~l~~ 236 (603)
+.+. ..+.+.|.. -++++...++.++.. .-+|....=.+ +. ..-+.+.+++.|..
T Consensus 138 ~~~p-~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~ 216 (454)
T 4ao9_A 138 ERFP-QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIER 216 (454)
T ss_dssp HHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHH
T ss_pred HhCC-CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhh
Confidence 7774 234455542 345666666666531 12333321000 00 01267888888874
Q ss_pred cCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCCCCCCCC---CCCCCcEEEEcccccC
Q 007454 237 KGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKDMDSFGL---SLVRPDFLICSFYQIF 308 (603)
Q Consensus 237 ~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl---s~~~~Dflv~S~hK~f 308 (603)
. .+++..|.+--+....|.+.| ++.+ ++|+++|+++++|=+|.+ .. ..... -...||+++++ |.+
T Consensus 217 ~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~-G~~~a~e~~gv~PDi~t~g--K~l 289 (454)
T 4ao9_A 217 H---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RL-APHGLANKLGIRSDLTTLG--KYI 289 (454)
T ss_dssp T---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GG-STTCHHHHHTCCCSEEEEE--GGG
T ss_pred c---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CC-ccccchhccCCCCcEEEec--ccc
Confidence 2 124665665555566898888 6655 479999999999998874 21 22211 12469998776 644
Q ss_pred CCCCCceEEEEEeCCCCcCcCC
Q 007454 309 GENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 309 G~~P~G~G~L~vkk~~~~~L~p 330 (603)
|+ -.-+|++..++++++.+.|
T Consensus 290 gg-G~Piga~~~~~ei~~~~~~ 310 (454)
T 4ao9_A 290 GG-GMSFGAFGGRADVMALFDP 310 (454)
T ss_dssp GT-TSSCEEEEECHHHHGGGCT
T ss_pred CC-CCcceeeeeHHHHHHHHhh
Confidence 32 1238999999998876654
No 231
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=98.38 E-value=0.00029 Score=76.75 Aligned_cols=213 Identities=16% Similarity=0.203 Sum_probs=122.0
Q ss_pred Cee-EEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccC-CCCC
Q 007454 243 QRG-LFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIF-GENP 312 (603)
Q Consensus 243 ~t~-Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~f-G~~P 312 (603)
++. +++=|.+ ...|.+.| ++.+ ++|+++|+++++|=+|.+ +.. |--...-...||+++++ |.. |+-|
T Consensus 226 ~iAAvivEPiq-g~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P 302 (456)
T 4atq_A 226 QVAAIIIEPIQ-GEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLP 302 (456)
T ss_dssp GEEEEEECSSB-TTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSS
T ss_pred ceEEEEecccc-CCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhh--hcccCcCC
Confidence 444 4444554 45788776 3444 378999999999998876 321 11111122469999987 543 3223
Q ss_pred CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454 313 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 392 (603)
Q Consensus 313 ~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~ 392 (603)
+|++.+++++++.+.+...|++ | .| | +++++
T Consensus 303 --~~av~~~~~i~~~~~~~~~~~T----------f-----------------------~g--n---pla~a--------- 333 (456)
T 4atq_A 303 --LSAITGRADLLDAVHPGGLGGT----------Y-----------------------GG--N---PVACA--------- 333 (456)
T ss_dssp --CEEEEEEHHHHTTSCTTSSCCS----------S-----------------------SS--C---HHHHH---------
T ss_pred --ceeeEecHHHHhcccccCCCCC----------C-----------------------CC--C---hHHHH---------
Confidence 7999999988776665333322 1 01 1 12221
Q ss_pred chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCceEE-Ee
Q 007454 393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ--HPNTEGNALVK-IY 469 (603)
Q Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~--h~~~~g~plv~-Iy 469 (603)
+++ +.|+.+++-+ +.++++.+.++|.++|.+|. ++.. +.|.|. |-
T Consensus 334 ---aal-------------------------a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~-~~~~v~~VR 381 (456)
T 4atq_A 334 ---AAL-------------------------AAIDTMEQHD---LNGRARHIEELALGKLRELAAELSAG-GGSVVGDIR 381 (456)
T ss_dssp ---HHH-------------------------HHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC------CEEEEE
T ss_pred ---hhH-------------------------HHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccc-cCCceEEee
Confidence 011 4677666543 45567777777777776652 1110 113331 21
Q ss_pred CCCCCCCCCCEEEEEEccCCCCccCHHH---HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccc
Q 007454 470 GPKIRFDRGPALAFNVFDWKREKIEPVL---VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 546 (603)
Q Consensus 470 gp~~~~~rg~ivsFnv~~~~g~~v~~~~---V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 546 (603)
-+|-++++.+.+.....-+.+. +.+.+-++|+.++.. +
T Consensus 382 ------G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~-------------------------g-------- 422 (456)
T 4atq_A 382 ------GRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC-------------------------G-------- 422 (456)
T ss_dssp ------EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE-------------------------C--------
T ss_pred ------ecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec-------------------------C--------
Confidence 2467888887553322112222 223333567665421 0
Q ss_pred ccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454 547 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA 583 (603)
Q Consensus 547 ~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~ 583 (603)
.. ..+||+++-+-.|.||||++++.|.+.|.+
T Consensus 423 ----~~-~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 423 ----TY-GNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ----TT-SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 11 148999999999999999999999988764
No 232
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=98.36 E-value=3.2e-05 Score=84.71 Aligned_cols=230 Identities=14% Similarity=0.123 Sum_probs=129.5
Q ss_pred HHHHHHHhhcCCCCCCeeEEEEeCccccccccccH----HHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcE
Q 007454 228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY----LWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRPDF 299 (603)
Q Consensus 228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl----~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Df 299 (603)
++|++.|... ...++..|.+.-+....|.+.|- +.+. +|+++|+++++|=+|.+ |.. |--...-...||+
T Consensus 223 ~~l~~~i~~~--~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi 300 (473)
T 4e3q_A 223 RELEETIQRE--GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDA 300 (473)
T ss_dssp HHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSE
T ss_pred HHHHHHHHhh--CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCCh
Confidence 3555555432 12356667766666678987773 3443 78999999999988775 221 1111112346999
Q ss_pred EEEcccccCC-C-CCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454 300 LICSFYQIFG-E-NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS 377 (603)
Q Consensus 300 lv~S~hK~fG-~-~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~ 377 (603)
++++ |-+| + -| +|++.+++++++.+.+..-. ... + .-.+|.+ .
T Consensus 301 ~t~~--K~l~gG~~P--l~av~~~~~i~~~~~~~~~~--------~~~--------------------~--~hg~T~~-G 345 (473)
T 4e3q_A 301 IISS--KNLTAGFFP--MGAVILGPELSKRLETAIEA--------IEE--------------------F--PHGFTAS-G 345 (473)
T ss_dssp EEEC--GGGGTTSSC--CEEEEECHHHHHHHHHHHHH--------HSC--------------------C--CCCCTTT-T
T ss_pred HHhc--ccccCCCCC--cccccccHHHHHHhcccccc--------ccc--------------------c--ccCCCCC-C
Confidence 9876 6433 1 13 79999999887544321000 000 0 0012211 1
Q ss_pred hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454 378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH 457 (603)
Q Consensus 378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h 457 (603)
.+++.+ +++ +.|+.+++- .+.++++.+.++|.++|.+|..
T Consensus 346 npla~A------------aal-------------------------a~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~ 385 (473)
T 4e3q_A 346 HPVGCA------------IAL-------------------------KAIDVVMNE---GLAENVRRLAPRFEERLKHIAE 385 (473)
T ss_dssp CHHHHH------------HHH-------------------------HHHHHHHHS---SHHHHHHHHHHHHHHHHHHHTT
T ss_pred Ccchhh------------hhh-------------------------hhhhhhccc---cHHHHHHHHHHHHHHHHHHHhc
Confidence 122222 011 466666653 4556777888888888887742
Q ss_pred CCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCc--cC-----HHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454 458 PNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREK--IE-----PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN 529 (603)
Q Consensus 458 ~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~--v~-----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~ 529 (603)
.|.| .|- .+|-++++.+...+... .+ ...+.+.+-++|+.++.
T Consensus 386 -----~~~v~~vR------G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~------------------ 436 (473)
T 4e3q_A 386 -----RPNIGEYR------GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRP------------------ 436 (473)
T ss_dssp -----STTEEEEE------EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEE------------------
T ss_pred -----CCCeeEEe------ecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEe------------------
Confidence 2323 121 24667777763322111 11 11233333345554431
Q ss_pred HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Q 007454 530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFV 586 (603)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~ 586 (603)
.+ .+||+++-+..|.+|||++++.+.+.|++-+-
T Consensus 437 ----------------------~g-~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 437 ----------------------LG-QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp ----------------------ET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------cC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 37999999999999999999999999987653
No 233
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=97.60 E-value=1e-07 Score=104.42 Aligned_cols=98 Identities=8% Similarity=0.034 Sum_probs=65.4
Q ss_pred CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCC--CCCCCCCCCCCc
Q 007454 226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKD--MDSFGLSLVRPD 298 (603)
Q Consensus 226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~D 298 (603)
|.++|+++|... .+++++|.+-...+.+|.+.| ++.+ ++|+++|+++++|-++. ... +..++.....||
T Consensus 219 d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pD 294 (465)
T 2yky_A 219 DVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISAD 294 (465)
Confidence 467777777631 135666666554445998887 6655 47899999999999987 321 111222234588
Q ss_pred EEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454 299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVD 330 (603)
Q Consensus 299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p 330 (603)
+++ +-|++|. .-.+|+++.++++++.+.+
T Consensus 295 i~t--~sK~lg~-G~piG~v~~~~~i~~~l~~ 323 (465)
T 2yky_A 295 LTT--LGKYIGG-GMSFGAFGGRRDLMERFDP 323 (465)
Confidence 775 4599983 2237999999998877765
No 234
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=97.60 E-value=0.0037 Score=67.19 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=65.5
Q ss_pred ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH-HH---HHHHhCCcEEEEecc-ccCCCC---CCCCC--
Q 007454 222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WM---RIAQENDWHILIDAC-ALGPKD---MDSFG-- 291 (603)
Q Consensus 222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~-~i---~~a~e~g~~vlvDAa-q~~~~~---m~~ld-- 291 (603)
+..++.+.+.+.+... .+++.++..+..+|.||..++.+ |- ..|++++++++.|-+ |-.... .....
T Consensus 172 ~~~~d~~~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~ 248 (420)
T 4h51_A 172 TVSLNFEGMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAAR 248 (420)
T ss_dssp GTEECHHHHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred ccCCCHHHHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHH
Confidence 3456788888877642 34678888888899999999997 43 357899999999975 322210 00000
Q ss_pred --CCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454 292 --LSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTV 325 (603)
Q Consensus 292 --ls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~ 325 (603)
.+....=+++.||=|-||. .| +|+|.+.....
T Consensus 249 ~~~~~~~~~i~~~s~SK~~~~--~G~RvG~~~~~~~~~ 284 (420)
T 4h51_A 249 LFARRGIEVLLAQSFSKNMGL--YSERAGTLSLLLKDK 284 (420)
T ss_dssp HHHHTTCCCEEEEECTTTSCC--GGGCEEEEEEECSCH
T ss_pred hHHhhCceEEEEecccccccc--ccCceEEEEecccCH
Confidence 0111123566799998884 36 99998876654
No 235
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.03 E-value=0.0014 Score=76.63 Aligned_cols=96 Identities=10% Similarity=0.158 Sum_probs=57.3
Q ss_pred HHHHHHHhhcC--CCCCCeeEEEEeC-cccccccccc----HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCC
Q 007454 228 EKLRKMVVSKG--KKKKQRGLFVFPL-HSRMTGARYP----YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSLV 295 (603)
Q Consensus 228 ~~L~~~l~~~~--~~~~~t~Lv~~~~-~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~ 295 (603)
+.|++.|.... ....++..|.+=- +.+..|.+.| ++.+ ++|+++|+++++|=+|.+ |+ |-....-..
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~-~fa~e~~gv 655 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTTELLGC 655 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB-SSTHHHHSS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC-chhhHhcCC
Confidence 56777664210 0123455555554 3778888765 5544 478999999999965542 32 111111124
Q ss_pred CCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcC
Q 007454 296 RPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILV 329 (603)
Q Consensus 296 ~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~ 329 (603)
.||++++| |-+|+ | +|++++++++++.+.
T Consensus 656 ~PDiitls--K~L~g---G~~Plgav~~~~~i~~~~~ 687 (831)
T 4a0g_A 656 KPDIACFA--KLLTG---GMVPLAVTLATDAVFDSFS 687 (831)
T ss_dssp CCSEEEEC--GGGGT---TSSCCEEEEECHHHHHTTC
T ss_pred CCcEEEEe--ccccc---CccCcEEEEECHHHHHHHh
Confidence 69988655 87752 4 599999998776554
No 236
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=95.93 E-value=0.072 Score=56.66 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=73.1
Q ss_pred HHHHHHcCCEEEEEec-cCCccccCHHHHHHHHhhcCCCCCCeeEEEE-eCccccccccccHHHH----HHHHhCCcEEE
Q 007454 203 IRTSEKRGARVMSAEF-SWPRLRINSEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYPYLWM----RIAQENDWHIL 276 (603)
Q Consensus 203 ~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~pl~~i----~~a~e~g~~vl 276 (603)
...++..|++++.+++ +..+..++.++|++.+... ++++++.+ +--+|.||..++.+.+ +.|++++++|+
T Consensus 136 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi 211 (405)
T 3k7y_A 136 VNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVII 211 (405)
T ss_dssp HHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEE
Confidence 3455678999999987 3224678999999999742 24566666 4457999999998733 35789999999
Q ss_pred Eeccc--cCCCCCC----CC-CC-CCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454 277 IDACA--LGPKDMD----SF-GL-SLVRPDFLICSFYQIFGENPSGFGCLFV 320 (603)
Q Consensus 277 vDAaq--~~~~~m~----~l-dl-s~~~~Dflv~S~hK~fG~~P~G~G~L~v 320 (603)
.|-+- +...+.. ++ .+ +...-=+++.||=|.||.+---+|.+++
T Consensus 212 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~ 263 (405)
T 3k7y_A 212 FDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHI 263 (405)
T ss_dssp EEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred EecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEE
Confidence 99652 2211000 00 00 1111236678999999832223788764
No 237
>4hfl_A Putative cytoplasmic protein; amidase, hydrolase; 2.00A {Enterobacter cloacae} PDB: 4hfk_A
Probab=23.13 E-value=96 Score=28.90 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCC--CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccC
Q 007454 440 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI--RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHH 516 (603)
Q Consensus 440 r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~--~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~ 516 (603)
|+..|++||...| |.|.+.|.||.. -..+-+||.|.+.+|... .-.|.|-.|.-|.
T Consensus 94 Rv~~l~~~L~~~l---------Gkpei~itg~~~~~ikgkkGII~f~~~~w~~a------------~gHidLwng~~~~ 151 (176)
T 4hfl_A 94 RVKDMIAFLPTVL---------GKADISVSSPTPAQFAGKQGIIIFTGHGWLDA------------TGHVTLWNGNICS 151 (176)
T ss_dssp CHHHHHHHHHHHH---------CSCSEEEESCCGGGGTTCCEEEEEEEECSSSE------------EEEEEEECSSCBS
T ss_pred eHHHHHHHHHHhh---------CCCcccccCcCHHHhCCCceEEEEEecCCCCC------------CCceEEEcCCeec
Confidence 5688999997665 456678888752 135789999999887521 2246676676663
Done!