BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007456
(603 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/541 (38%), Positives = 299/541 (55%), Gaps = 22/541 (4%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
+RG + +P NKD F L E S E Q R +++F L + +
Sbjct: 24 QRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFD-- 81
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
++ +L L DRNE L+YRVL +I+ F PI+YTPTVGL CQ YS +FR+PRG
Sbjct: 82 --------RYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRG 133
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ + D+G + S++ WP + IV+TDG RILGLGDLG G+GIP+GKL +Y A G
Sbjct: 134 LFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGG 193
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP-KAIV 268
+NPQ LPV+LDVGT N++LL+D LY+GLRQ R+ G EY +DEFMEAV +++ ++
Sbjct: 194 MNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLI 253
Query: 269 QFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIXX 328
QFEDF AF L +YR ++C FNDDIQ R ++ +DQ I
Sbjct: 254 QFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALR---ITKNKLSDQTILF 310
Query: 329 XXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388
+ V A + G A K +L+D GLI K R +L FA +
Sbjct: 311 QGAGEAALGIAHLIVMALEK-EGLPKEKAIKKIWLVDSKGLIVKGRASLTQEKEKFAHEH 369
Query: 389 GDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPTM 448
E +L +V+++KP F+E++LK M + +P IFA+SNPT
Sbjct: 370 ------EEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNE-RPIIFALSNPTS 422
Query: 449 NAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508
AEC+A +K +FASGSPF+ V L NG+ + Q NN Y+FPG+ LG + G R
Sbjct: 423 KAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLR 482
Query: 509 FITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHG 568
ITD + AE +A ++D+ + +G LYP +++IRD++ ++ +++ A +E A +
Sbjct: 483 QITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYP 542
Query: 569 E 569
E
Sbjct: 543 E 543
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/550 (37%), Positives = 308/550 (56%), Gaps = 27/550 (4%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
KR ++L +P NK GF L E ++ EQQ R + R Q
Sbjct: 37 KRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLRE-------Q 89
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
PN LA++ L+ L DRNE L+YRV+ D++K+ PI+YTPTVGL CQN+ ++R+P+G
Sbjct: 90 PN---DLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKG 146
Query: 150 MYFSAKDKG--EMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+Y + D ++ ++ NW + V IV+TDG RILGLGDLG GIGIP+GKL +YVA
Sbjct: 147 LYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVAL 206
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKA 266
G+ P+ LPV+LDVGTNN LL D Y+GLR R+ G++Y +++D FM+A ++ K
Sbjct: 207 GGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKT 266
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 326
++QFEDF AF L++Y+ ++ MFNDDIQ R ++ + +K
Sbjct: 267 LIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTR---VTKKLVSQEKY 323
Query: 327 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK 386
+M V + G + A N+ +L+D DGL+TK RK ++P FAK
Sbjct: 324 LFFGAGAASTGIAEMIVH-QMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAK 382
Query: 387 DPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNP 446
D + E S+LEV+R +P FNEEV++AM E + +P IFA+SNP
Sbjct: 383 D------MPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINE-RPIIFALSNP 435
Query: 447 TMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506
T AECTA +A+ ++ASGSPF N +L NG Q NN Y+FPG+ LGT+L
Sbjct: 436 TSKAECTAEEAYTFTNGAALYASGSPFPNFEL-NGHTYKPGQGNNAYIFPGVALGTILFQ 494
Query: 507 ARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEG 566
R + + + AA+ +AS +T++ + G +YP + IR+I+ ++ + + + A
Sbjct: 495 IRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANL 554
Query: 567 HGEVGPRDLK 576
+ + P DL+
Sbjct: 555 YPQ--PEDLE 562
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 350 bits (898), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 190/555 (34%), Positives = 294/555 (52%), Gaps = 24/555 (4%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
K+G ++L DP NK F L E + + Q +++F L +
Sbjct: 1 KKGYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSD---- 56
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
L ++ +L L DRNE L+Y+VL +I+ F PI+YTPTVGL CQ+Y FRRPRG
Sbjct: 57 ------LDRYILLXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRG 110
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ + D+G + + + +WP + IV+TDG RILGLGDLG G GIP+GKL +Y A G
Sbjct: 111 LFITIHDRGHIATXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGG 170
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAIV 268
+ P + LPV LDVGT+N+ LL+D LY+GLR R+ G+ Y ++DEF EAV +R+ ++
Sbjct: 171 VKPHQCLPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLI 230
Query: 269 QFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIXX 328
QFEDF AF L +YR ++C FNDDIQ R ++ +D +
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALR---ITKNRLSDHTVLF 287
Query: 329 XXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388
+ V A + G + A + + +D GLI K R +L P FA +
Sbjct: 288 QGAGEAALGIANLIVXAXQK-EGVSKEEAIKRIWXVDSKGLIVKGRASLTPEKEHFAHEH 346
Query: 389 GDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPTM 448
E +L ++V+ +KP F +++L+ + +P IFA+SNPT
Sbjct: 347 C------EXKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDXAAFNK-RPIIFALSNPTS 399
Query: 449 NAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508
AECTA +K+ +FASGSPF+ V L +G+ + Q NN Y+FPG+ LG + G +
Sbjct: 400 KAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLK 459
Query: 509 FITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHG 568
I D + AE +A +++E + +G LYP + +I+ ++ ++ + + A + A +
Sbjct: 460 HIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYP 519
Query: 569 EVGPRDLKHMSKEET 583
+ P DL+ + +
Sbjct: 520 Q--PEDLEAFIRSQV 532
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 342 bits (876), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 199/558 (35%), Positives = 301/558 (53%), Gaps = 23/558 (4%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTE 87
+ ++G ++ +P NK F L E + + + Q RF R+L+K T
Sbjct: 2 IKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRF---HRNLKKMTS 58
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 59 -------PLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRP 111
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G+GIP+GKL +Y A
Sbjct: 112 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTAC 171
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK-A 266
AGI P + LPV +DVGT+N LL+D Y+GL Q R ++Y ++DEFM+A+ R+ +
Sbjct: 172 AGIRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNT 231
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 326
++QFEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 232 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQ---GTAAVALAGLLAAQKVISKPISEHKI 288
Query: 327 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 385
+ V + G ++ A+ K ++ DK GL+ K RK +D PF
Sbjct: 289 LFLGAGEAALGIANLIVMSMVE-NGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFT 347
Query: 386 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 445
+ + + + V +KP F +V++AM S + +P IFA+SN
Sbjct: 348 HSAPESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAM-ASINERPVIFALSN 402
Query: 446 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 505
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 403 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 462
Query: 506 GARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 565
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V +A
Sbjct: 463 NTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAF 522
Query: 566 GHGEVGPRDLKHMSKEET 583
+ E P D KE+T
Sbjct: 523 VYPE--PEDKAKYVKEQT 538
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 199/575 (34%), Positives = 298/575 (51%), Gaps = 31/575 (5%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTE 87
+ ++G + +P NK F L E + + + Q RF R+L+K T
Sbjct: 21 IKEKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRF---HRNLKKXTS 77
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 78 -------PLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 130
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G GIP+GKL +Y A
Sbjct: 131 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 190
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK-A 266
AGI P R LPV +DVGT+N LL+D Y GL Q R ++Y ++DEF +A+ R+ +
Sbjct: 191 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 250
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 326
++QFEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 251 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLA---AQKVISKPISEHKI 307
Query: 327 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 385
+ V + G ++ A+ K + DK GL+ K RK +D PF
Sbjct: 308 LFLGAGEAALGIANLIVXSXVE-NGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFT 366
Query: 386 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 445
+ + + + V +KP F +V++A S + +P IFA+SN
Sbjct: 367 HSAPESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSN 421
Query: 446 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 505
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 422 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 481
Query: 506 GARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 565
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V A
Sbjct: 482 NTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXA- 540
Query: 566 GHGEVGPRDLKHMSKEETVEYVTRSMWFPIYSPLV 600
++ E+ +YV W Y L+
Sbjct: 541 ---------FRYPEPEDKAKYVKERTWRSEYDSLL 566
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 199/575 (34%), Positives = 298/575 (51%), Gaps = 31/575 (5%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTE 87
+ ++G + +P NK F L E + + + Q RF R+L+K T
Sbjct: 21 IKEKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRF---HRNLKKXTS 77
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 78 -------PLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 130
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G GIP+GKL +Y A
Sbjct: 131 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 190
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK-A 266
AGI P R LPV +DVGT+N LL+D Y GL Q R ++Y ++DEF +A+ R+ +
Sbjct: 191 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 250
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 326
++QFEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 251 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLA---AQKVISKPISEHKI 307
Query: 327 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 385
+ V + G ++ A+ K + DK GL+ K RK +D PF
Sbjct: 308 LFLGAGEAALGIANLIVXSXVE-NGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFT 366
Query: 386 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 445
+ + + + V +KP F +V++A S + +P IFA+SN
Sbjct: 367 HSAPESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSN 421
Query: 446 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 505
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 422 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 481
Query: 506 GARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 565
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V A
Sbjct: 482 NTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXA- 540
Query: 566 GHGEVGPRDLKHMSKEETVEYVTRSMWFPIYSPLV 600
++ E+ +YV W Y L+
Sbjct: 541 ---------FRYPEPEDKAKYVKERTWRSEYDSLL 566
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 335 bits (858), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 199/575 (34%), Positives = 298/575 (51%), Gaps = 31/575 (5%)
Query: 28 VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTE 87
+ ++G + +P NK F L E + + + Q RF R+L+K T
Sbjct: 1 IKEKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFH---RNLKKXTS 57
Query: 88 GQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRP 147
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP
Sbjct: 58 -------PLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRP 110
Query: 148 RGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAA 207
+G++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G GIP+GKL +Y A
Sbjct: 111 KGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTAC 170
Query: 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK-A 266
AGI P R LPV +DVGT+N LL+D Y GL Q R ++Y ++DEF +A+ R+ +
Sbjct: 171 AGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNT 230
Query: 267 IVQFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKI 326
++QFEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 231 LIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLA---AQKVISKPISEHKI 287
Query: 327 XXXXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFA 385
+ V + G ++ A+ K + DK GL+ K RK +D PF
Sbjct: 288 LFLGAGEAALGIANLIVXSXVE-NGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFT 346
Query: 386 KDPGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSN 445
+ + + + V +KP F +V++A S + +P IFA+SN
Sbjct: 347 HSAPESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSN 401
Query: 446 PTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 505
PT AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 402 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILC 461
Query: 506 GARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 565
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V A
Sbjct: 462 NTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXA- 520
Query: 566 GHGEVGPRDLKHMSKEETVEYVTRSMWFPIYSPLV 600
++ E+ +YV W Y L+
Sbjct: 521 ---------FRYPEPEDKAKYVKERTWRSEYDSLL 546
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 199/573 (34%), Positives = 297/573 (51%), Gaps = 31/573 (5%)
Query: 30 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQ 89
++G + +P NK F L E + + + Q RF R+L+K T
Sbjct: 1 EKGKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFH---RNLKKXTS-- 55
Query: 90 PNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRG 149
L K+ + + +RNE L+YR+L D+I+ PI+YTPTVGL C Y +FRRP+G
Sbjct: 56 -----PLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKG 110
Query: 150 MYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAG 209
++ S D+G + S++ NWP V +V+TDG RILGLGDLGV G GIP+GKL +Y A AG
Sbjct: 111 LFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAG 170
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK-AIV 268
I P R LPV +DVGT+N LL+D Y GL Q R ++Y ++DEF +A+ R+ + ++
Sbjct: 171 IRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLI 230
Query: 269 QFEDFQMKWAFETLERYRKRFCMFNDDIQXXXXXXXXXXXXXXRAQGLSLTDFADQKIXX 328
QFEDF AF L +YR+++C FNDDIQ AQ + ++ KI
Sbjct: 231 QFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLA---AQKVISKPISEHKILF 287
Query: 329 XXXXXXXXXXXKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD 387
+ V + G ++ A+ K + DK GL+ K RK +D PF
Sbjct: 288 LGAGEAALGIANLIVXSXVE-NGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHS 346
Query: 388 PGDFMGLREGASLLEVVRKVKPHXXXXXXXXXXXFNEEVLKAMRESDSVKPAIFAMSNPT 447
+ + + + V +KP F +V++A S + +P IFA+SNPT
Sbjct: 347 APESI----PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAX-ASINERPVIFALSNPT 401
Query: 448 MNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGA 507
AECTA +A+ +FASGSPF V L +G++ Q NN+Y+FPG+ L +L
Sbjct: 402 AQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNT 461
Query: 508 RFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGH 567
R I+D + +AA+ L S +TDEE+ +G LYP + +I++++ + V A
Sbjct: 462 RHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXA--- 518
Query: 568 GEVGPRDLKHMSKEETVEYVTRSMWFPIYSPLV 600
++ E+ +YV W Y L+
Sbjct: 519 -------FRYPEPEDKAKYVKERTWRSEYDSLL 544
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 435 SVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYL 494
+ +P IFAM+NP E +A + AG IV G G+ NQ NN+
Sbjct: 280 AARPVIFAMANPI--PEIYPDEALE-AGAYIV------------GTGRSDFPNQINNVLA 324
Query: 495 FPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAV 554
FPGI G L + A+ IT M AA+ +AS + D+ + + P D+ ++ AE+ A
Sbjct: 325 FPGIFRGALDARAKTITVEMQIAAAKGIASLVPDDALSTTNIIP--DAFKEGVAEIVAKS 382
Query: 555 LRAAV 559
+R+ V
Sbjct: 383 VRSVV 387
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 51/173 (29%)
Query: 127 IIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGL 186
I YTP V V AKDK ++ Y+ ++ + V++DG+ +LGL
Sbjct: 38 IAYTPGVASVSSAI-------------AKDK----TLAYDLTTKKNTVAVISDGTAVLGL 80
Query: 187 GDLGVQGIGIPI--GKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLE 244
GD+G + +P+ GK ++ A AG++ +P++LD +
Sbjct: 81 GDIGPEA-AMPVMEGKAALFKAFAGVDA---IPIVLDTK--------------------D 116
Query: 245 GEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRK--RFCMFNDD 295
EE +SIV + ED FE +R K +F+DD
Sbjct: 117 TEEIISIVKALAPTFGG------INLEDISAPRCFEIEQRLIKECHIPVFHDD 163
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 435 SVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYL 494
S KP IFA++NP + A + AG IV G+ H NQ NN+
Sbjct: 275 SRKPVIFALANPVPEIDPELA---REAGAFIV------------ATGRSDHPNQVNNLLA 319
Query: 495 FPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSID 541
FPGI G + ++ IT ML A E +A E P+ I+ + D
Sbjct: 320 FPGIMKGAVEKRSK-ITKNMLLSAVEAIARSCEPE--PERIIPEAFD 363
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 425 EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIG 484
E +K+M E KP +F +NP E +A K AG IV G+
Sbjct: 312 EWIKSMGE----KPIVFCCANPV--PEIYPYEA-KEAGAYIV------------ATGRGD 352
Query: 485 HVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASY 525
NQ NN FPGI G L+ AR ITD M A+ LA +
Sbjct: 353 FPNQVNNSVGFPGILKGALIVRARKITDNMAIAASRALAEF 393
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 435 SVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYL 494
S KP IFA++NP + A + AG IV G+ H NQ NN+
Sbjct: 285 SRKPVIFALANPVPEIDPELA---REAGAFIV------------ATGRSDHPNQVNNLLA 329
Query: 495 FPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSID 541
FPGI G + ++ IT L A E +A E P+ I+ + D
Sbjct: 330 FPGIXKGAVEKRSK-ITKNXLLSAVEAIARSCEPE--PERIIPEAFD 373
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 51/173 (29%)
Query: 129 YTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188
YTP V C+ A+D G+ +Y + ++ + V++DGSRILGLG+
Sbjct: 38 YTPGVAEPCKEI-------------ARDPGK----VYEYTSKGNLVAVVSDGSRILGLGN 80
Query: 189 LG-VQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEE 247
+G + G+ + GK ++ G++ P+M+ N+
Sbjct: 81 IGPLAGLPVMEGKALLFKRFGGVD---AFPIMIKEQEPNK-------------------- 117
Query: 248 YLSIVDEFMEAVHARWPK-AIVQFEDFQMKWAFETLERYRKRF--CMFNDDIQ 297
F++ V A P + ED F LER R+ +F+DD Q
Sbjct: 118 -------FIDIVKAIAPTFGGINLEDIASPKCFYILERLREELDIPVFHDDQQ 163
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 440 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499
+F ++NP E +A K AG IV G+ + NQ NN+ FPGI
Sbjct: 292 VFPLANPV--PEILPEEA-KKAGARIV------------ATGRSDYPNQINNLLGFPGIF 336
Query: 500 LGTLLSGARFITDGM 514
G L AR ITD M
Sbjct: 337 RGALDVRARTITDSM 351
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 51/173 (29%)
Query: 129 YTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188
YTP V C+ A+D G+ +Y + ++ + V++DGSRILGLG+
Sbjct: 38 YTPGVAEPCKEI-------------ARDPGK----VYEYTSKGNLVAVVSDGSRILGLGN 80
Query: 189 LG-VQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEE 247
+G + G+ + GK ++ G++ P+ + N+
Sbjct: 81 IGPLAGLPVXEGKALLFKRFGGVD---AFPIXIKEQEPNK-------------------- 117
Query: 248 YLSIVDEFMEAVHARWPK-AIVQFEDFQMKWAFETLERYRKRF--CMFNDDIQ 297
F++ V A P + ED F LER R+ +F+DD Q
Sbjct: 118 -------FIDIVKAIAPTFGGINLEDIASPKCFYILERLREELDIPVFHDDQQ 163
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Query: 440 IFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499
+F ++NP E +A K AG IV G+ + NQ NN+ FPGI
Sbjct: 292 VFPLANPV--PEILPEEA-KKAGARIV------------ATGRSDYPNQINNLLGFPGIF 336
Query: 500 LGTLLSGARFITD 512
G L AR ITD
Sbjct: 337 RGALDVRARTITD 349
>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga
Maritima At 1.60 A Resolution
Length = 234
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 210 INPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDE--------FMEAVHA 261
I + +L++ + L+ L L + +G +Y ++DE F+E V
Sbjct: 110 IKEREAADAVLEISKKRKNLIFSSFDLDLLDEKFKGTKYGYLIDEENYGSIENFVERVEK 169
Query: 262 RWPKAI-VQFEDFQMKWAFETLERYRKR 288
P ++ V ++ F++++A E L +RK+
Sbjct: 170 ERPYSLHVPYQAFELEYAVEVLRSFRKK 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,183,246
Number of Sequences: 62578
Number of extensions: 648561
Number of successful extensions: 1473
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 23
length of query: 603
length of database: 14,973,337
effective HSP length: 104
effective length of query: 499
effective length of database: 8,465,225
effective search space: 4224147275
effective search space used: 4224147275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)