Query 007456
Match_columns 603
No_of_seqs 189 out of 1360
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 23:50:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 2E-213 5E-218 1686.6 43.0 544 25-600 24-569 (582)
2 PRK13529 malate dehydrogenase; 100.0 4E-211 8E-216 1705.4 51.0 553 22-601 7-562 (563)
3 PTZ00317 NADP-dependent malic 100.0 4E-208 8E-213 1680.5 49.8 551 21-595 8-559 (559)
4 PLN03129 NADP-dependent malic 100.0 4E-207 8E-212 1678.7 50.6 541 29-600 39-581 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 6E-118 1E-122 940.7 36.1 427 65-599 1-431 (432)
6 PRK12862 malic enzyme; Reviewe 100.0 4E-109 9E-114 938.4 34.6 363 114-565 31-412 (763)
7 PRK12861 malic enzyme; Reviewe 100.0 4E-109 8E-114 934.0 32.7 365 113-565 26-408 (764)
8 PRK07232 bifunctional malic en 100.0 2E-108 5E-113 928.2 33.6 363 114-565 23-404 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 1.1E-97 2E-102 760.2 29.3 279 296-594 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 2.6E-95 6E-100 734.7 19.7 255 296-559 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 6.7E-92 1.5E-96 709.1 25.3 251 296-558 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 1.7E-83 3.6E-88 619.2 5.6 181 106-286 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 1.2E-56 2.6E-61 446.8 22.1 225 296-558 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.7 1.1E-07 2.3E-12 81.5 10.3 86 298-444 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.5 0.0019 4.1E-08 71.3 15.1 160 243-448 106-303 (425)
16 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0046 1E-07 68.0 13.7 130 288-459 163-302 (413)
17 PTZ00075 Adenosylhomocysteinas 96.8 0.043 9.3E-07 61.6 16.4 122 289-447 216-344 (476)
18 TIGR00936 ahcY adenosylhomocys 96.8 0.016 3.4E-07 63.8 12.7 128 288-457 156-293 (406)
19 PLN02494 adenosylhomocysteinas 96.7 0.017 3.7E-07 64.6 12.7 125 294-460 231-355 (477)
20 cd05211 NAD_bind_Glu_Leu_Phe_V 96.5 0.024 5.3E-07 57.2 11.5 135 299-459 2-140 (217)
21 TIGR01035 hemA glutamyl-tRNA r 96.4 0.012 2.6E-07 64.5 9.3 122 297-448 158-281 (417)
22 PRK14982 acyl-ACP reductase; P 96.4 0.011 2.5E-07 63.5 8.9 114 299-448 134-250 (340)
23 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.021 4.6E-07 60.1 10.3 138 276-448 139-277 (311)
24 PRK00045 hemA glutamyl-tRNA re 96.0 0.036 7.8E-07 60.8 10.2 121 298-448 161-284 (423)
25 PLN02477 glutamate dehydrogena 96.0 0.21 4.5E-06 55.3 16.0 191 243-459 112-324 (410)
26 PRK14192 bifunctional 5,10-met 95.9 0.044 9.5E-07 57.6 9.9 109 298-459 137-250 (283)
27 PF01488 Shikimate_DH: Shikima 95.7 0.011 2.5E-07 54.7 4.2 106 318-448 7-113 (135)
28 cd01080 NAD_bind_m-THF_DH_Cycl 95.7 0.055 1.2E-06 52.7 9.1 85 311-448 35-120 (168)
29 TIGR02853 spore_dpaA dipicolin 95.7 0.09 1.9E-06 55.1 11.1 138 296-472 127-265 (287)
30 PF00670 AdoHcyase_NAD: S-aden 95.4 0.29 6.4E-06 47.8 12.8 121 297-459 3-123 (162)
31 PRK08306 dipicolinate synthase 95.4 0.11 2.4E-06 54.6 10.4 128 305-472 137-266 (296)
32 PRK14175 bifunctional 5,10-met 94.7 0.09 2E-06 55.5 7.4 140 253-446 76-232 (286)
33 PTZ00079 NADP-specific glutama 94.6 1.3 2.9E-05 49.7 16.5 189 243-459 143-366 (454)
34 PRK09414 glutamate dehydrogena 94.6 0.75 1.6E-05 51.5 14.6 194 243-459 138-357 (445)
35 PLN00203 glutamyl-tRNA reducta 94.5 0.16 3.6E-06 57.6 9.5 124 300-448 245-373 (519)
36 PRK00676 hemA glutamyl-tRNA re 94.3 0.1 2.2E-06 56.3 7.0 125 276-448 136-265 (338)
37 PRK14031 glutamate dehydrogena 94.3 1.7 3.8E-05 48.7 16.6 187 243-448 134-348 (444)
38 PRK13940 glutamyl-tRNA reducta 94.1 0.054 1.2E-06 59.7 4.6 98 320-448 178-277 (414)
39 cd01076 NAD_bind_1_Glu_DH NAD( 94.1 0.28 6.1E-06 49.9 9.4 129 298-448 9-141 (227)
40 cd05313 NAD_bind_2_Glu_DH NAD( 94.1 0.43 9.3E-06 49.7 10.8 138 299-459 17-167 (254)
41 PRK08293 3-hydroxybutyryl-CoA 94.0 0.69 1.5E-05 47.9 12.3 195 324-565 4-213 (287)
42 COG0373 HemA Glutamyl-tRNA red 93.9 0.16 3.4E-06 56.3 7.6 216 276-562 139-361 (414)
43 cd05197 GH4_glycoside_hydrolas 93.8 0.09 1.9E-06 58.2 5.5 129 324-470 1-166 (425)
44 PLN00106 malate dehydrogenase 93.7 0.42 9E-06 51.2 10.0 120 305-448 4-139 (323)
45 cd01075 NAD_bind_Leu_Phe_Val_D 93.6 0.31 6.8E-06 48.3 8.6 122 299-459 5-129 (200)
46 TIGR00518 alaDH alanine dehydr 93.5 0.24 5.2E-06 53.7 8.1 98 321-444 165-267 (370)
47 PRK14030 glutamate dehydrogena 93.5 2.6 5.7E-05 47.3 16.2 194 243-459 134-357 (445)
48 TIGR02354 thiF_fam2 thiamine b 93.4 0.095 2.1E-06 52.2 4.4 109 317-452 18-127 (200)
49 PRK06129 3-hydroxyacyl-CoA deh 93.2 0.52 1.1E-05 49.3 9.8 38 484-521 184-221 (308)
50 PRK08328 hypothetical protein; 92.9 0.049 1.1E-06 55.2 1.6 125 281-449 6-132 (231)
51 PRK14191 bifunctional 5,10-met 92.6 0.34 7.4E-06 51.2 7.3 130 253-428 75-220 (285)
52 cd05296 GH4_P_beta_glucosidase 92.5 0.17 3.7E-06 55.9 5.2 129 324-470 1-166 (419)
53 PRK12549 shikimate 5-dehydroge 92.2 0.22 4.7E-06 52.1 5.3 49 305-367 112-160 (284)
54 cd01078 NAD_bind_H4MPT_DH NADP 92.1 0.35 7.6E-06 47.0 6.4 123 299-448 7-133 (194)
55 cd05212 NAD_bind_m-THF_DH_Cycl 92.1 1.2 2.5E-05 42.4 9.6 83 301-429 9-92 (140)
56 PRK06035 3-hydroxyacyl-CoA deh 91.8 6.2 0.00013 40.9 15.5 32 324-367 4-35 (291)
57 PRK09424 pntA NAD(P) transhydr 91.7 1.1 2.3E-05 51.1 10.4 43 408-454 248-296 (509)
58 PTZ00082 L-lactate dehydrogena 91.5 0.51 1.1E-05 50.3 7.3 129 323-473 6-156 (321)
59 PRK06223 malate dehydrogenase; 91.5 0.52 1.1E-05 49.1 7.2 126 324-474 3-148 (307)
60 PTZ00117 malate dehydrogenase; 91.0 0.71 1.5E-05 49.1 7.7 129 323-473 5-150 (319)
61 PF00208 ELFV_dehydrog: Glutam 90.8 0.35 7.7E-06 49.7 5.1 136 295-448 6-152 (244)
62 PRK14176 bifunctional 5,10-met 90.7 0.76 1.7E-05 48.7 7.5 84 299-428 143-227 (287)
63 cd00650 LDH_MDH_like NAD-depen 90.7 0.35 7.6E-06 49.5 4.9 130 326-475 1-148 (263)
64 PRK12749 quinate/shikimate deh 90.7 0.41 8.9E-06 50.3 5.5 49 305-367 109-157 (288)
65 PF00056 Ldh_1_N: lactate/mala 90.5 0.13 2.8E-06 48.4 1.5 114 324-459 1-130 (141)
66 PRK10792 bifunctional 5,10-met 90.1 0.85 1.8E-05 48.3 7.2 84 299-428 138-222 (285)
67 PRK14194 bifunctional 5,10-met 90.0 0.88 1.9E-05 48.5 7.3 93 299-444 138-231 (301)
68 PRK07531 bifunctional 3-hydrox 90.0 2.1 4.6E-05 48.1 10.8 130 324-478 5-145 (495)
69 PF03807 F420_oxidored: NADP o 89.9 0.77 1.7E-05 39.2 5.6 95 325-446 1-96 (96)
70 cd01065 NAD_bind_Shikimate_DH 89.8 0.63 1.4E-05 42.9 5.4 113 305-448 4-121 (155)
71 PRK12548 shikimate 5-dehydroge 89.8 0.63 1.4E-05 48.7 6.0 58 288-367 102-159 (289)
72 PTZ00325 malate dehydrogenase; 89.7 1.7 3.8E-05 46.5 9.3 108 322-448 7-129 (321)
73 PRK14189 bifunctional 5,10-met 89.6 0.95 2.1E-05 47.9 7.2 84 299-428 137-221 (285)
74 PRK14027 quinate/shikimate deh 89.6 0.52 1.1E-05 49.5 5.2 57 289-367 104-160 (283)
75 TIGR01763 MalateDH_bact malate 89.5 0.49 1.1E-05 50.0 5.0 126 324-474 2-147 (305)
76 PRK00257 erythronate-4-phospha 89.3 2.7 5.9E-05 46.2 10.6 159 299-506 95-263 (381)
77 PF00899 ThiF: ThiF family; I 89.2 0.46 9.9E-06 43.6 4.0 36 323-369 2-37 (135)
78 PRK00066 ldh L-lactate dehydro 89.1 1.9 4E-05 46.0 9.0 127 324-473 7-150 (315)
79 cd01079 NAD_bind_m-THF_DH NAD 89.0 1.5 3.3E-05 44.2 7.8 104 301-429 34-148 (197)
80 PF01262 AlaDh_PNT_C: Alanine 89.0 0.33 7E-06 46.6 2.9 93 322-430 19-129 (168)
81 TIGR01809 Shik-DH-AROM shikima 88.9 0.66 1.4E-05 48.4 5.4 57 289-367 100-158 (282)
82 PLN02928 oxidoreductase family 88.9 3.3 7.2E-05 44.7 10.8 147 297-468 120-284 (347)
83 PRK05086 malate dehydrogenase; 88.7 2.5 5.4E-05 45.0 9.5 106 324-448 1-122 (312)
84 PF01210 NAD_Gly3P_dh_N: NAD-d 88.6 0.23 5.1E-06 47.0 1.7 88 325-432 1-91 (157)
85 PRK09260 3-hydroxybutyryl-CoA 88.4 1.1 2.5E-05 46.3 6.7 32 324-367 2-33 (288)
86 PRK14619 NAD(P)H-dependent gly 88.2 2.8 6E-05 44.0 9.5 32 324-367 5-36 (308)
87 PRK14178 bifunctional 5,10-met 88.1 1.1 2.5E-05 47.2 6.5 85 298-428 130-215 (279)
88 PRK02842 light-independent pro 88.0 3.3 7.2E-05 45.7 10.3 189 149-416 173-368 (427)
89 PRK14183 bifunctional 5,10-met 87.9 1.5 3.3E-05 46.4 7.3 86 298-429 135-221 (281)
90 TIGR00561 pntA NAD(P) transhyd 87.7 1.8 4E-05 49.3 8.3 122 295-431 134-275 (511)
91 PRK14190 bifunctional 5,10-met 87.7 1.6 3.5E-05 46.2 7.3 84 299-428 137-221 (284)
92 PRK15076 alpha-galactosidase; 87.6 0.82 1.8E-05 50.8 5.4 134 324-474 2-174 (431)
93 PRK00258 aroE shikimate 5-dehy 87.6 0.98 2.1E-05 46.8 5.6 49 305-367 107-156 (278)
94 PRK11880 pyrroline-5-carboxyla 87.6 9.6 0.00021 38.7 12.7 120 324-478 3-123 (267)
95 PF02882 THF_DHG_CYH_C: Tetrah 87.4 2.4 5.2E-05 41.3 7.8 84 300-429 16-100 (160)
96 TIGR00872 gnd_rel 6-phosphoglu 87.4 3.5 7.5E-05 43.2 9.6 95 325-448 2-97 (298)
97 COG0169 AroE Shikimate 5-dehyd 87.2 1 2.2E-05 47.7 5.4 48 306-367 110-159 (283)
98 PRK06130 3-hydroxybutyryl-CoA 87.0 20 0.00043 37.4 14.9 129 324-478 5-144 (311)
99 PRK08605 D-lactate dehydrogena 86.9 4.7 0.0001 43.2 10.4 117 297-448 104-240 (332)
100 cd05297 GH4_alpha_glucosidase_ 86.9 0.94 2E-05 50.0 5.3 131 325-472 2-170 (423)
101 PRK09599 6-phosphogluconate de 86.8 2.3 5E-05 44.4 7.9 96 325-448 2-98 (301)
102 PRK15438 erythronate-4-phospha 86.8 4.3 9.2E-05 44.7 10.2 108 297-445 93-208 (378)
103 PRK07679 pyrroline-5-carboxyla 86.7 16 0.00035 37.7 13.9 100 323-448 3-103 (279)
104 cd00704 MDH Malate dehydrogena 86.7 3.1 6.8E-05 44.5 9.0 120 325-461 2-140 (323)
105 PRK08374 homoserine dehydrogen 86.7 4.3 9.4E-05 43.6 10.0 109 324-441 3-120 (336)
106 PRK14179 bifunctional 5,10-met 86.6 1.9 4.2E-05 45.7 7.2 93 299-444 137-230 (284)
107 PRK07066 3-hydroxybutyryl-CoA 86.6 0.72 1.6E-05 49.4 4.1 111 401-520 103-221 (321)
108 PRK14174 bifunctional 5,10-met 86.5 2.3 5E-05 45.3 7.7 134 253-428 75-226 (295)
109 PRK12921 2-dehydropantoate 2-r 86.5 1.8 4E-05 44.4 6.9 103 325-448 2-106 (305)
110 PRK12490 6-phosphogluconate de 86.1 2.5 5.5E-05 44.2 7.8 96 325-448 2-98 (299)
111 PF02826 2-Hacid_dh_C: D-isome 85.9 2.3 5.1E-05 41.1 6.9 117 313-468 29-149 (178)
112 cd05291 HicDH_like L-2-hydroxy 85.7 3.1 6.8E-05 43.7 8.3 128 324-473 1-145 (306)
113 COG0578 GlpA Glycerol-3-phosph 85.6 4.6 9.9E-05 46.4 10.0 157 324-562 13-178 (532)
114 PLN03139 formate dehydrogenase 85.6 17 0.00037 40.1 14.1 224 261-527 117-365 (386)
115 PRK05808 3-hydroxybutyryl-CoA 85.5 21 0.00044 36.9 14.0 32 324-367 4-35 (282)
116 COG1486 CelF Alpha-galactosida 85.4 0.88 1.9E-05 50.9 4.1 128 322-466 2-166 (442)
117 PRK07634 pyrroline-5-carboxyla 85.3 11 0.00024 37.6 11.6 117 323-470 4-121 (245)
118 PRK14172 bifunctional 5,10-met 85.2 6.3 0.00014 41.7 10.1 129 253-428 76-221 (278)
119 TIGR02992 ectoine_eutC ectoine 85.0 6.6 0.00014 41.8 10.4 106 324-457 130-238 (326)
120 PF01113 DapB_N: Dihydrodipico 85.0 4.9 0.00011 36.9 8.2 97 324-443 1-98 (124)
121 PRK14177 bifunctional 5,10-met 84.7 3.1 6.6E-05 44.2 7.5 84 300-429 139-223 (284)
122 PRK12550 shikimate 5-dehydroge 84.2 1.7 3.6E-05 45.5 5.3 56 289-367 100-155 (272)
123 PRK14184 bifunctional 5,10-met 84.2 6.3 0.00014 41.9 9.6 134 253-428 75-224 (286)
124 cd05298 GH4_GlvA_pagL_like Gly 84.1 1.5 3.3E-05 48.9 5.3 133 324-474 1-171 (437)
125 PRK14170 bifunctional 5,10-met 84.1 3.2 6.9E-05 44.1 7.4 131 253-429 75-221 (284)
126 TIGR02356 adenyl_thiF thiazole 83.9 0.95 2.1E-05 44.9 3.2 38 316-367 17-54 (202)
127 PRK08644 thiamine biosynthesis 83.9 0.92 2E-05 45.6 3.2 38 316-367 24-61 (212)
128 KOG0685 Flavin-containing amin 83.8 0.44 9.6E-06 53.5 1.0 22 323-344 21-42 (498)
129 PRK00094 gpsA NAD(P)H-dependen 83.6 2.5 5.4E-05 43.8 6.3 105 324-448 2-109 (325)
130 cd00757 ThiF_MoeB_HesA_family 83.6 0.97 2.1E-05 45.5 3.2 106 317-448 18-124 (228)
131 PRK07574 formate dehydrogenase 83.5 20 0.00043 39.6 13.5 200 261-499 110-335 (385)
132 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.5 3.8 8.2E-05 46.5 8.2 105 405-520 108-221 (503)
133 PRK08223 hypothetical protein; 83.4 0.59 1.3E-05 49.5 1.6 58 279-368 4-61 (287)
134 PRK08410 2-hydroxyacid dehydro 83.3 24 0.00051 37.6 13.6 147 261-446 59-234 (311)
135 PRK12475 thiamine/molybdopteri 83.0 1.1 2.3E-05 48.3 3.4 39 316-368 20-58 (338)
136 PRK14166 bifunctional 5,10-met 82.9 3.9 8.4E-05 43.4 7.4 131 253-429 74-221 (282)
137 TIGR02355 moeB molybdopterin s 82.9 1.1 2.3E-05 45.9 3.3 107 316-448 20-127 (240)
138 PRK05600 thiamine biosynthesis 82.8 0.92 2E-05 49.4 2.8 124 282-442 19-162 (370)
139 PLN02602 lactate dehydrogenase 82.6 4 8.6E-05 44.3 7.6 127 324-473 38-182 (350)
140 PRK14188 bifunctional 5,10-met 82.6 3.1 6.7E-05 44.4 6.6 82 299-426 137-219 (296)
141 KOG0029 Amine oxidase [Seconda 82.5 0.59 1.3E-05 52.9 1.3 34 324-360 16-49 (501)
142 PRK14187 bifunctional 5,10-met 82.3 4.3 9.3E-05 43.3 7.5 86 298-429 138-224 (294)
143 PF07992 Pyr_redox_2: Pyridine 81.8 1.4 3.1E-05 41.7 3.5 31 325-367 1-31 (201)
144 KOG2337 Ubiquitin activating E 81.8 1.1 2.4E-05 50.9 3.1 42 319-371 336-377 (669)
145 PRK06436 glycerate dehydrogena 81.8 10 0.00022 40.3 10.2 109 320-468 119-231 (303)
146 cd01979 Pchlide_reductase_N Pc 81.7 10 0.00023 41.3 10.5 130 149-345 162-298 (396)
147 PRK13243 glyoxylate reductase; 81.7 35 0.00076 36.6 14.2 198 262-500 64-291 (333)
148 PRK12480 D-lactate dehydrogena 81.5 12 0.00027 40.1 10.8 113 298-447 105-237 (330)
149 PRK05597 molybdopterin biosynt 81.3 1 2.2E-05 48.6 2.6 38 316-367 24-61 (355)
150 TIGR03140 AhpF alkyl hydropero 81.3 2.5 5.5E-05 47.5 5.7 96 254-366 137-243 (515)
151 cd01485 E1-1_like Ubiquitin ac 81.3 1.3 2.9E-05 43.9 3.1 79 316-414 15-94 (198)
152 cd01483 E1_enzyme_family Super 80.9 1.5 3.2E-05 40.6 3.1 121 325-470 1-121 (143)
153 PRK14171 bifunctional 5,10-met 80.8 5 0.00011 42.7 7.3 131 253-429 76-223 (288)
154 PLN02516 methylenetetrahydrofo 80.7 5 0.00011 42.9 7.3 86 298-429 145-231 (299)
155 PRK14169 bifunctional 5,10-met 80.7 5.2 0.00011 42.5 7.4 86 298-429 134-220 (282)
156 PRK14193 bifunctional 5,10-met 80.6 5.1 0.00011 42.6 7.3 87 299-429 137-224 (284)
157 cd01487 E1_ThiF_like E1_ThiF_l 80.3 1.6 3.4E-05 42.5 3.2 32 325-367 1-32 (174)
158 PRK05690 molybdopterin biosynt 80.3 1.6 3.5E-05 44.7 3.5 38 316-367 28-65 (245)
159 cd01337 MDH_glyoxysomal_mitoch 80.2 11 0.00023 40.4 9.7 104 325-448 2-121 (310)
160 PTZ00345 glycerol-3-phosphate 80.1 2.8 6.1E-05 45.7 5.4 22 324-345 12-33 (365)
161 TIGR01381 E1_like_apg7 E1-like 80.1 1.4 3E-05 51.5 3.2 38 321-369 336-373 (664)
162 PRK05442 malate dehydrogenase; 80.1 6.6 0.00014 42.2 8.1 121 324-461 5-144 (326)
163 PRK14168 bifunctional 5,10-met 80.1 5.4 0.00012 42.6 7.3 90 298-429 139-229 (297)
164 cd01339 LDH-like_MDH L-lactate 79.9 2.5 5.4E-05 44.2 4.8 125 326-473 1-143 (300)
165 COG0111 SerA Phosphoglycerate 79.8 13 0.00029 40.0 10.3 98 300-430 104-223 (324)
166 PRK07878 molybdopterin biosynt 79.6 1 2.3E-05 49.2 1.9 38 316-367 38-75 (392)
167 cd01336 MDH_cytoplasmic_cytoso 79.6 12 0.00026 40.1 9.9 135 324-475 3-158 (325)
168 cd00755 YgdL_like Family of ac 79.4 1.6 3.6E-05 44.6 3.2 35 322-367 10-44 (231)
169 PRK07530 3-hydroxybutyryl-CoA 79.0 8.1 0.00018 40.0 8.2 32 324-367 5-36 (292)
170 COG0240 GpsA Glycerol-3-phosph 78.9 2.7 5.8E-05 45.5 4.7 101 324-444 2-105 (329)
171 PRK14182 bifunctional 5,10-met 78.9 6.5 0.00014 41.7 7.5 84 300-429 137-221 (282)
172 PRK14180 bifunctional 5,10-met 78.8 6.6 0.00014 41.7 7.4 130 253-428 75-221 (282)
173 PRK14173 bifunctional 5,10-met 78.7 6.4 0.00014 41.9 7.4 85 299-429 134-219 (287)
174 PRK06522 2-dehydropantoate 2-r 78.7 8.6 0.00019 39.3 8.2 102 325-448 2-104 (304)
175 PRK14181 bifunctional 5,10-met 78.6 17 0.00036 38.8 10.4 135 253-429 70-221 (287)
176 cd05294 LDH-like_MDH_nadp A la 78.6 11 0.00023 40.1 9.0 127 324-471 1-147 (309)
177 cd01492 Aos1_SUMO Ubiquitin ac 78.3 1.7 3.6E-05 43.2 2.8 80 316-416 17-96 (197)
178 PRK13581 D-3-phosphoglycerate 78.3 29 0.00063 39.6 12.9 222 262-529 61-305 (526)
179 PRK07680 late competence prote 77.9 6.6 0.00014 40.3 7.1 98 325-448 2-100 (273)
180 TIGR00507 aroE shikimate 5-deh 77.9 3.8 8.3E-05 42.2 5.4 48 305-367 102-149 (270)
181 PRK08229 2-dehydropantoate 2-r 77.8 8.5 0.00018 40.5 8.0 105 324-449 3-112 (341)
182 PRK06476 pyrroline-5-carboxyla 77.7 49 0.0011 33.6 13.3 97 325-449 2-98 (258)
183 cd05293 LDH_1 A subgroup of L- 77.7 8.2 0.00018 41.1 7.9 127 324-473 4-148 (312)
184 PRK14851 hypothetical protein; 77.6 6.1 0.00013 46.6 7.5 128 316-463 39-194 (679)
185 PRK08762 molybdopterin biosynt 77.6 1.9 4.1E-05 46.8 3.1 37 317-367 132-168 (376)
186 PRK14167 bifunctional 5,10-met 76.9 7.2 0.00016 41.7 7.1 88 300-429 137-225 (297)
187 PRK09310 aroDE bifunctional 3- 76.9 3.7 8.1E-05 46.2 5.3 48 305-367 317-364 (477)
188 PRK07688 thiamine/molybdopteri 76.7 2.3 5E-05 45.8 3.5 39 316-368 20-58 (339)
189 PRK15317 alkyl hydroperoxide r 76.6 3.6 7.7E-05 46.3 5.1 94 257-367 139-243 (517)
190 PLN02616 tetrahydrofolate dehy 76.6 7.3 0.00016 42.8 7.2 86 298-429 209-295 (364)
191 PRK06487 glycerate dehydrogena 76.0 37 0.0008 36.2 12.2 217 262-527 63-309 (317)
192 cd05290 LDH_3 A subgroup of L- 75.9 8.3 0.00018 41.1 7.3 126 325-472 1-146 (307)
193 PRK11790 D-3-phosphoglycerate 75.4 66 0.0014 35.7 14.3 223 261-529 71-319 (409)
194 PRK14186 bifunctional 5,10-met 75.4 9 0.0002 41.0 7.4 85 299-429 137-222 (297)
195 PRK15116 sulfur acceptor prote 75.1 2.7 5.9E-05 44.1 3.4 40 317-370 27-66 (268)
196 COG0686 Ald Alanine dehydrogen 75.1 2.7 5.8E-05 45.5 3.4 107 324-456 169-290 (371)
197 COG0334 GdhA Glutamate dehydro 74.8 1.1E+02 0.0023 34.5 15.6 193 241-459 110-325 (411)
198 TIGR01772 MDH_euk_gproteo mala 74.7 16 0.00035 39.1 9.1 128 325-474 1-148 (312)
199 TIGR02622 CDP_4_6_dhtase CDP-g 74.4 3.3 7.2E-05 43.5 3.9 102 322-444 3-127 (349)
200 COG0039 Mdh Malate/lactate deh 74.2 9 0.00019 41.3 7.1 115 324-459 1-130 (313)
201 PRK09754 phenylpropionate diox 74.2 6.5 0.00014 42.4 6.2 36 322-367 2-37 (396)
202 PRK14185 bifunctional 5,10-met 74.2 9.8 0.00021 40.6 7.3 89 299-429 136-225 (293)
203 PRK06270 homoserine dehydrogen 74.0 30 0.00064 37.3 11.0 111 324-441 3-123 (341)
204 PF00070 Pyr_redox: Pyridine n 73.9 4.5 9.7E-05 33.7 3.8 35 325-371 1-35 (80)
205 TIGR01327 PGDH D-3-phosphoglyc 73.8 39 0.00086 38.6 12.5 223 262-529 59-304 (525)
206 PRK12439 NAD(P)H-dependent gly 73.7 4.4 9.5E-05 43.3 4.7 21 324-344 8-28 (341)
207 PLN02897 tetrahydrofolate dehy 73.5 10 0.00022 41.5 7.2 86 298-429 192-278 (345)
208 TIGR01408 Ube1 ubiquitin-activ 73.3 1.8 3.9E-05 53.1 1.8 43 316-367 415-457 (1008)
209 PF13738 Pyr_redox_3: Pyridine 72.2 3.6 7.8E-05 39.2 3.3 30 327-367 1-30 (203)
210 PF03446 NAD_binding_2: NAD bi 72.0 4.7 0.0001 38.3 4.0 95 324-448 2-98 (163)
211 PLN02306 hydroxypyruvate reduc 72.0 29 0.00063 38.3 10.5 135 288-445 109-273 (386)
212 PF02737 3HCDH_N: 3-hydroxyacy 71.8 3.7 8.1E-05 40.1 3.3 31 325-367 1-31 (180)
213 PRK07411 hypothetical protein; 71.8 3.2 6.9E-05 45.5 3.1 38 316-367 34-71 (390)
214 PRK14618 NAD(P)H-dependent gly 71.7 10 0.00022 39.9 6.8 32 324-367 5-36 (328)
215 PF01494 FAD_binding_3: FAD bi 71.5 3.4 7.3E-05 42.0 3.0 35 324-370 2-36 (356)
216 PRK07502 cyclohexadienyl dehyd 71.3 25 0.00053 36.8 9.4 34 324-367 7-40 (307)
217 cd01486 Apg7 Apg7 is an E1-lik 71.1 3.7 8.1E-05 44.0 3.3 32 325-367 1-32 (307)
218 COG0190 FolD 5,10-methylene-te 70.8 9.7 0.00021 40.5 6.3 131 253-429 74-220 (283)
219 TIGR01915 npdG NADPH-dependent 70.8 7.9 0.00017 38.6 5.4 101 325-448 2-105 (219)
220 TIGR01758 MDH_euk_cyt malate d 70.7 22 0.00047 38.2 9.0 136 325-477 1-157 (324)
221 PRK08291 ectoine utilization p 70.6 27 0.0006 37.2 9.7 106 324-456 133-240 (330)
222 PTZ00142 6-phosphogluconate de 70.6 11 0.00023 42.7 6.9 102 324-447 2-104 (470)
223 PRK15469 ghrA bifunctional gly 70.3 43 0.00093 35.8 11.1 159 320-526 133-297 (312)
224 PF05834 Lycopene_cycl: Lycope 69.0 5.6 0.00012 42.8 4.2 35 326-370 2-36 (374)
225 PRK10886 DnaA initiator-associ 69.0 14 0.0003 37.0 6.7 23 324-347 42-64 (196)
226 TIGR01292 TRX_reduct thioredox 68.7 4.2 9.1E-05 40.9 3.0 31 325-367 2-32 (300)
227 PRK06153 hypothetical protein; 68.5 3.5 7.6E-05 45.6 2.5 106 316-448 172-279 (393)
228 PLN02688 pyrroline-5-carboxyla 68.2 20 0.00043 36.4 7.8 96 325-448 2-99 (266)
229 PRK06141 ornithine cyclodeamin 68.1 41 0.00088 35.7 10.3 105 324-456 126-232 (314)
230 cd01484 E1-2_like Ubiquitin ac 68.0 4.8 0.0001 41.3 3.3 32 325-367 1-32 (234)
231 PRK07340 ornithine cyclodeamin 67.5 44 0.00095 35.4 10.4 103 324-456 126-230 (304)
232 TIGR03376 glycerol3P_DH glycer 67.3 10 0.00022 41.1 5.8 20 325-344 1-20 (342)
233 cd01338 MDH_choloroplast_like 67.0 29 0.00063 37.2 9.1 120 324-461 3-142 (322)
234 COG5322 Predicted dehydrogenas 67.0 9.9 0.00022 40.6 5.3 46 297-345 144-190 (351)
235 TIGR00762 DegV EDD domain prot 66.9 19 0.00042 37.3 7.5 117 208-357 19-141 (275)
236 cd01491 Ube1_repeat1 Ubiquitin 66.8 4.9 0.00011 42.6 3.1 37 317-367 16-52 (286)
237 TIGR00873 gnd 6-phosphoglucona 65.5 18 0.00039 40.8 7.4 97 326-445 2-99 (467)
238 PLN02520 bifunctional 3-dehydr 64.9 10 0.00022 43.4 5.4 36 317-367 376-411 (529)
239 cd01488 Uba3_RUB Ubiquitin act 64.8 5.5 0.00012 42.3 3.1 32 325-367 1-32 (291)
240 PRK06249 2-dehydropantoate 2-r 64.3 15 0.00032 38.6 6.1 104 324-448 6-110 (313)
241 KOG0069 Glyoxylate/hydroxypyru 64.0 36 0.00079 37.1 9.0 114 298-447 120-256 (336)
242 PRK06932 glycerate dehydrogena 63.6 51 0.0011 35.2 10.0 141 319-500 143-289 (314)
243 TIGR01759 MalateDH-SF1 malate 63.6 46 0.001 35.8 9.7 121 324-461 4-143 (323)
244 PRK00536 speE spermidine synth 63.4 10 0.00022 39.8 4.7 84 324-431 74-158 (262)
245 TIGR01285 nifN nitrogenase mol 63.3 25 0.00054 39.1 8.0 83 309-417 300-382 (432)
246 PRK12409 D-amino acid dehydrog 62.6 6.9 0.00015 42.0 3.4 33 324-368 2-34 (410)
247 PRK06475 salicylate hydroxylas 62.3 6.5 0.00014 42.3 3.1 22 323-344 2-23 (400)
248 cd01489 Uba2_SUMO Ubiquitin ac 62.0 8 0.00017 41.5 3.7 32 325-367 1-32 (312)
249 PRK04965 NADH:flavorubredoxin 61.8 12 0.00026 40.0 5.0 36 324-369 3-38 (377)
250 TIGR01283 nifE nitrogenase mol 61.6 13 0.00029 41.3 5.5 192 149-416 204-403 (456)
251 TIGR01470 cysG_Nterm siroheme 61.3 8.4 0.00018 38.6 3.5 35 321-367 7-41 (205)
252 PRK14620 NAD(P)H-dependent gly 61.3 27 0.00057 36.8 7.4 31 325-367 2-32 (326)
253 PRK15409 bifunctional glyoxyla 61.1 34 0.00075 36.7 8.3 148 263-445 64-237 (323)
254 TIGR02028 ChlP geranylgeranyl 60.8 7 0.00015 42.4 3.1 31 325-367 2-32 (398)
255 PTZ00245 ubiquitin activating 60.6 4.2 9.1E-05 43.0 1.3 38 316-367 22-59 (287)
256 PRK04176 ribulose-1,5-biphosph 60.5 4.9 0.00011 41.4 1.7 37 321-369 23-59 (257)
257 PRK06719 precorrin-2 dehydroge 60.4 9.2 0.0002 36.7 3.5 35 321-367 11-45 (157)
258 PF13454 NAD_binding_9: FAD-NA 60.1 8.7 0.00019 36.2 3.2 36 327-369 1-36 (156)
259 cd00300 LDH_like L-lactate deh 60.1 29 0.00063 36.6 7.4 124 326-471 1-141 (300)
260 PRK06184 hypothetical protein; 59.9 8.2 0.00018 43.0 3.4 34 323-368 3-36 (502)
261 PRK13512 coenzyme A disulfide 59.7 12 0.00026 41.2 4.6 34 324-367 2-35 (438)
262 PLN02172 flavin-containing mon 59.5 8.7 0.00019 43.0 3.6 22 323-344 10-31 (461)
263 PRK07236 hypothetical protein; 59.5 8.8 0.00019 41.0 3.5 23 323-345 6-28 (386)
264 PLN02819 lysine-ketoglutarate 59.4 25 0.00055 43.6 7.6 23 323-345 203-225 (1042)
265 TIGR02023 BchP-ChlP geranylger 59.3 7.9 0.00017 41.5 3.1 31 325-367 2-32 (388)
266 TIGR02371 ala_DH_arch alanine 59.0 71 0.0015 34.2 10.2 106 324-457 129-236 (325)
267 COG0565 LasT rRNA methylase [T 58.7 34 0.00073 35.8 7.4 78 323-419 4-83 (242)
268 PRK09564 coenzyme A disulfide 58.2 13 0.00029 40.3 4.7 36 324-369 1-36 (444)
269 KOG2304 3-hydroxyacyl-CoA dehy 57.8 9.3 0.0002 40.0 3.1 32 324-367 12-43 (298)
270 PLN02852 ferredoxin-NADP+ redu 57.8 11 0.00024 42.8 4.1 34 324-367 27-60 (491)
271 PRK06823 ornithine cyclodeamin 57.6 85 0.0018 33.6 10.5 107 324-458 129-237 (315)
272 PRK06718 precorrin-2 dehydroge 57.5 11 0.00024 37.7 3.5 34 321-366 8-41 (202)
273 PRK05732 2-octaprenyl-6-methox 57.4 9.6 0.00021 40.3 3.3 35 324-367 4-38 (395)
274 PF01266 DAO: FAD dependent ox 57.3 11 0.00023 38.5 3.5 33 325-369 1-33 (358)
275 PRK07819 3-hydroxybutyryl-CoA 57.3 9.8 0.00021 39.8 3.3 32 324-367 6-37 (286)
276 PTZ00318 NADH dehydrogenase-li 57.2 8.1 0.00017 42.3 2.8 34 323-368 10-43 (424)
277 PRK12769 putative oxidoreducta 57.1 9.7 0.00021 44.3 3.6 33 323-367 327-359 (654)
278 PRK12810 gltD glutamate syntha 56.8 10 0.00022 42.3 3.5 34 323-368 143-176 (471)
279 PRK07233 hypothetical protein; 56.8 8.5 0.00018 41.0 2.8 32 325-368 1-32 (434)
280 PRK11883 protoporphyrinogen ox 56.8 5.3 0.00011 43.0 1.3 22 324-345 1-22 (451)
281 PF01408 GFO_IDH_MocA: Oxidore 55.9 16 0.00034 32.1 3.9 83 325-432 2-84 (120)
282 PRK08163 salicylate hydroxylas 55.8 10 0.00022 40.3 3.2 21 324-344 5-25 (396)
283 PRK14106 murD UDP-N-acetylmura 55.6 12 0.00025 41.0 3.7 24 322-345 4-27 (450)
284 PRK06847 hypothetical protein; 55.6 11 0.00024 39.7 3.4 32 324-367 5-36 (375)
285 TIGR01316 gltA glutamate synth 55.6 11 0.00024 41.8 3.5 32 324-367 134-165 (449)
286 COG2072 TrkA Predicted flavopr 55.6 11 0.00024 41.9 3.6 36 324-370 9-44 (443)
287 cd01968 Nitrogenase_NifE_I Nit 55.5 65 0.0014 35.3 9.4 193 149-417 165-365 (410)
288 COG0644 FixC Dehydrogenases (f 55.0 12 0.00025 40.6 3.5 36 324-371 4-39 (396)
289 PF13407 Peripla_BP_4: Peripla 54.8 42 0.0009 32.9 7.1 146 144-316 53-206 (257)
290 COG1252 Ndh NADH dehydrogenase 54.5 12 0.00026 41.7 3.5 35 323-367 3-37 (405)
291 PF13450 NAD_binding_8: NAD(P) 54.3 12 0.00026 30.9 2.8 31 328-370 1-31 (68)
292 PRK07364 2-octaprenyl-6-methox 54.2 9.6 0.00021 40.8 2.7 22 324-345 19-40 (415)
293 TIGR01505 tartro_sem_red 2-hyd 54.2 32 0.0007 35.5 6.5 31 325-367 1-31 (291)
294 PRK11559 garR tartronate semia 54.1 37 0.00079 35.1 6.9 32 324-367 3-34 (296)
295 PRK09126 hypothetical protein; 54.0 11 0.00024 39.9 3.1 22 324-345 4-25 (392)
296 TIGR01790 carotene-cycl lycope 53.9 11 0.00023 40.1 3.0 31 326-368 2-32 (388)
297 PRK12771 putative glutamate sy 53.8 12 0.00026 42.6 3.5 33 323-367 137-169 (564)
298 cd01833 XynB_like SGNH_hydrola 53.8 56 0.0012 29.9 7.4 66 189-269 18-83 (157)
299 PRK11445 putative oxidoreducta 53.3 12 0.00027 39.6 3.3 31 325-368 3-33 (351)
300 TIGR03169 Nterm_to_SelD pyridi 53.2 9.2 0.0002 40.4 2.4 36 325-369 1-36 (364)
301 cd08237 ribitol-5-phosphate_DH 53.2 2.3E+02 0.005 29.8 12.8 33 324-366 165-197 (341)
302 TIGR02032 GG-red-SF geranylger 53.1 12 0.00026 37.3 3.0 33 325-369 2-34 (295)
303 cd05292 LDH_2 A subgroup of L- 53.0 74 0.0016 33.7 9.0 126 325-473 2-144 (308)
304 PLN02268 probable polyamine ox 52.7 5.3 0.00012 43.3 0.5 21 325-345 2-22 (435)
305 TIGR03366 HpnZ_proposed putati 52.5 30 0.00064 35.3 5.8 47 305-366 107-153 (280)
306 PRK12831 putative oxidoreducta 52.3 13 0.00029 41.4 3.5 33 323-367 140-172 (464)
307 cd01965 Nitrogenase_MoFe_beta_ 52.2 58 0.0013 35.9 8.4 98 324-448 300-400 (428)
308 PRK06046 alanine dehydrogenase 52.1 1.4E+02 0.003 31.9 11.0 106 324-457 130-237 (326)
309 PRK11749 dihydropyrimidine deh 52.0 13 0.00027 41.2 3.2 32 324-367 141-172 (457)
310 COG0499 SAM1 S-adenosylhomocys 52.0 95 0.0021 34.7 9.7 121 293-456 185-306 (420)
311 PRK06753 hypothetical protein; 51.8 13 0.00028 39.2 3.1 21 325-345 2-22 (373)
312 PRK12770 putative glutamate sy 51.5 14 0.00031 39.1 3.5 33 323-367 18-50 (352)
313 PRK09880 L-idonate 5-dehydroge 51.3 27 0.00058 36.6 5.4 44 308-366 159-202 (343)
314 PRK09853 putative selenate red 51.2 13 0.00028 45.9 3.4 33 323-367 539-571 (1019)
315 KOG2711 Glycerol-3-phosphate d 51.1 77 0.0017 35.0 8.8 110 323-444 21-139 (372)
316 PRK06928 pyrroline-5-carboxyla 51.1 39 0.00085 35.0 6.6 100 324-448 2-102 (277)
317 PRK11728 hydroxyglutarate oxid 51.0 15 0.00032 39.4 3.6 35 324-368 3-37 (393)
318 PRK07045 putative monooxygenas 51.0 14 0.0003 39.4 3.3 22 324-345 6-27 (388)
319 PRK12814 putative NADPH-depend 50.8 14 0.0003 43.1 3.5 33 323-367 193-225 (652)
320 TIGR00292 thiazole biosynthesi 50.7 8.7 0.00019 39.6 1.7 35 324-370 22-56 (254)
321 PRK11259 solA N-methyltryptoph 50.5 15 0.00032 38.7 3.3 34 324-369 4-37 (376)
322 PRK07608 ubiquinone biosynthes 50.4 13 0.00028 39.3 2.9 32 324-367 6-37 (388)
323 PRK06834 hypothetical protein; 50.3 15 0.00032 41.3 3.5 35 322-368 2-36 (488)
324 TIGR01214 rmlD dTDP-4-dehydror 50.0 45 0.00097 33.5 6.6 59 325-418 1-60 (287)
325 PLN00093 geranylgeranyl diphos 49.5 14 0.0003 41.2 3.2 21 324-344 40-60 (450)
326 PRK12779 putative bifunctional 49.5 14 0.0003 45.3 3.3 37 324-372 307-347 (944)
327 PRK08849 2-octaprenyl-3-methyl 49.4 15 0.00033 39.3 3.3 32 324-367 4-35 (384)
328 TIGR03693 ocin_ThiF_like putat 49.1 52 0.0011 38.8 7.6 137 252-420 71-216 (637)
329 PRK08773 2-octaprenyl-3-methyl 49.0 13 0.00029 39.5 2.8 33 324-368 7-39 (392)
330 TIGR01377 soxA_mon sarcosine o 48.7 16 0.00035 38.4 3.3 33 325-369 2-34 (380)
331 cd01974 Nitrogenase_MoFe_beta 48.6 65 0.0014 35.7 8.1 82 316-417 299-386 (435)
332 PRK01438 murD UDP-N-acetylmura 48.5 19 0.00042 39.9 4.0 22 323-344 16-37 (480)
333 TIGR03315 Se_ygfK putative sel 48.4 15 0.00033 45.4 3.4 33 323-367 537-569 (1012)
334 PF00743 FMO-like: Flavin-bind 48.2 18 0.00039 41.4 3.8 32 324-367 2-33 (531)
335 TIGR01984 UbiH 2-polyprenyl-6- 48.1 14 0.00031 38.9 2.8 20 326-345 2-21 (382)
336 PRK07588 hypothetical protein; 48.0 16 0.00034 39.0 3.1 21 324-344 1-21 (391)
337 TIGR01789 lycopene_cycl lycope 47.9 27 0.00058 37.8 4.9 36 326-371 2-37 (370)
338 PLN02545 3-hydroxybutyryl-CoA 47.9 18 0.00038 37.6 3.4 32 324-367 5-36 (295)
339 PRK12266 glpD glycerol-3-phosp 47.8 15 0.00034 41.3 3.2 34 324-369 7-40 (508)
340 PRK14478 nitrogenase molybdenu 47.8 1E+02 0.0022 34.8 9.6 38 308-353 312-349 (475)
341 PRK12778 putative bifunctional 47.8 18 0.0004 42.8 3.9 33 323-367 431-463 (752)
342 TIGR00031 UDP-GALP_mutase UDP- 47.7 17 0.00036 40.0 3.3 31 325-367 3-33 (377)
343 PRK00141 murD UDP-N-acetylmura 47.6 17 0.00037 40.6 3.5 25 321-345 13-37 (473)
344 PRK06416 dihydrolipoamide dehy 47.5 16 0.00034 40.2 3.1 33 324-368 5-37 (462)
345 KOG0743 AAA+-type ATPase [Post 47.5 28 0.00061 39.4 5.0 153 116-331 192-345 (457)
346 PRK14989 nitrite reductase sub 47.5 26 0.00057 42.4 5.2 48 323-378 3-50 (847)
347 PRK07877 hypothetical protein; 47.4 28 0.0006 41.6 5.3 107 316-444 103-229 (722)
348 PRK05714 2-octaprenyl-3-methyl 47.2 13 0.00028 39.8 2.4 32 324-367 3-34 (405)
349 PRK08013 oxidoreductase; Provi 47.2 17 0.00036 39.2 3.2 32 324-367 4-35 (400)
350 cd01493 APPBP1_RUB Ubiquitin a 47.2 15 0.00033 41.1 2.9 37 317-367 17-53 (425)
351 COG1052 LdhA Lactate dehydroge 47.2 1.1E+02 0.0024 33.1 9.3 105 320-459 143-251 (324)
352 PRK07251 pyridine nucleotide-d 46.8 18 0.00039 39.6 3.4 33 324-368 4-36 (438)
353 PRK12491 pyrroline-5-carboxyla 46.6 3E+02 0.0064 28.7 12.2 35 324-366 3-37 (272)
354 TIGR01988 Ubi-OHases Ubiquinon 46.5 16 0.00034 38.3 2.8 31 326-368 2-32 (385)
355 PRK01747 mnmC bifunctional tRN 46.3 18 0.0004 42.0 3.6 33 324-368 261-293 (662)
356 TIGR03143 AhpF_homolog putativ 46.2 16 0.00036 41.6 3.1 32 325-368 6-37 (555)
357 TIGR01692 HIBADH 3-hydroxyisob 46.2 42 0.00092 34.8 5.9 32 489-520 168-202 (288)
358 PF02056 Glyco_hydro_4: Family 46.1 16 0.00036 36.4 2.7 110 325-448 1-148 (183)
359 PRK09897 hypothetical protein; 46.1 26 0.00056 40.3 4.7 35 324-368 2-36 (534)
360 PRK10157 putative oxidoreducta 46.0 17 0.00036 40.0 3.0 32 324-367 6-37 (428)
361 TIGR01317 GOGAT_sm_gam glutama 46.0 19 0.00042 40.4 3.6 32 324-367 144-175 (485)
362 PF01946 Thi4: Thi4 family; PD 46.0 21 0.00045 37.0 3.5 36 324-371 18-53 (230)
363 PRK08219 short chain dehydroge 45.9 55 0.0012 31.4 6.3 22 398-419 60-82 (227)
364 PRK11730 fadB multifunctional 45.9 17 0.00036 43.1 3.2 108 402-520 413-528 (715)
365 PRK08244 hypothetical protein; 45.9 17 0.00037 40.3 3.1 22 324-345 3-24 (493)
366 PLN02463 lycopene beta cyclase 45.8 17 0.00036 40.7 3.0 32 324-367 29-60 (447)
367 PRK08243 4-hydroxybenzoate 3-m 45.8 19 0.00041 38.6 3.3 33 324-368 3-35 (392)
368 COG2423 Predicted ornithine cy 45.7 1E+02 0.0022 33.6 8.8 124 303-459 115-241 (330)
369 COG0476 ThiF Dinucleotide-util 45.2 13 0.00029 37.8 2.0 92 316-430 26-117 (254)
370 PRK06185 hypothetical protein; 45.2 18 0.00038 38.7 3.0 33 324-368 7-39 (407)
371 PLN02676 polyamine oxidase 45.0 40 0.00087 38.0 5.9 22 324-345 27-48 (487)
372 TIGR01350 lipoamide_DH dihydro 45.0 19 0.00041 39.4 3.3 30 325-366 3-32 (461)
373 PF13241 NAD_binding_7: Putati 44.9 12 0.00025 33.2 1.3 36 321-368 5-40 (103)
374 PRK11101 glpA sn-glycerol-3-ph 44.4 20 0.00043 40.9 3.4 32 324-367 7-38 (546)
375 PF12831 FAD_oxidored: FAD dep 44.4 19 0.00041 39.7 3.1 33 326-370 2-34 (428)
376 TIGR03364 HpnW_proposed FAD de 44.4 19 0.0004 37.9 3.0 32 325-368 2-33 (365)
377 PF02558 ApbA: Ketopantoate re 44.4 22 0.00047 32.7 3.1 31 326-368 1-31 (151)
378 COG1232 HemY Protoporphyrinoge 44.4 37 0.0008 38.3 5.4 105 324-501 1-111 (444)
379 PRK08850 2-octaprenyl-6-methox 44.3 19 0.00042 38.7 3.1 32 324-367 5-36 (405)
380 KOG2250 Glutamate/leucine/phen 44.2 2E+02 0.0044 33.2 10.9 191 246-459 158-379 (514)
381 PRK07538 hypothetical protein; 44.2 19 0.00041 38.9 3.1 20 325-344 2-21 (413)
382 TIGR01318 gltD_gamma_fam gluta 44.0 22 0.00048 39.7 3.6 33 323-367 141-173 (467)
383 PRK00711 D-amino acid dehydrog 44.0 21 0.00045 38.3 3.3 31 325-367 2-32 (416)
384 PRK12809 putative oxidoreducta 43.7 23 0.0005 41.2 3.8 34 323-368 310-343 (639)
385 PRK12570 N-acetylmuramic acid- 43.6 67 0.0014 34.2 6.9 38 408-448 127-166 (296)
386 KOG2018 Predicted dinucleotide 43.4 22 0.00049 38.7 3.3 38 321-369 72-109 (430)
387 PRK07494 2-octaprenyl-6-methox 43.4 19 0.00042 38.2 2.9 33 324-368 8-40 (388)
388 PRK13369 glycerol-3-phosphate 43.4 19 0.00041 40.4 3.0 33 324-368 7-39 (502)
389 COG1179 Dinucleotide-utilizing 43.3 19 0.0004 38.0 2.7 44 318-372 25-68 (263)
390 PRK08010 pyridine nucleotide-d 43.3 20 0.00044 39.2 3.2 32 324-367 4-35 (441)
391 PRK07333 2-octaprenyl-6-methox 43.3 18 0.00038 38.5 2.6 21 325-345 3-23 (403)
392 cd01490 Ube1_repeat2 Ubiquitin 43.2 23 0.00049 39.9 3.5 37 325-367 1-37 (435)
393 TIGR02053 MerA mercuric reduct 43.2 21 0.00045 39.4 3.2 31 326-368 3-33 (463)
394 PRK06912 acoL dihydrolipoamide 43.0 21 0.00046 39.4 3.3 31 325-367 2-32 (458)
395 COG3349 Uncharacterized conser 42.9 17 0.00038 41.3 2.6 46 324-372 1-51 (485)
396 PRK07535 methyltetrahydrofolat 42.9 71 0.0015 33.4 6.9 76 254-366 80-161 (261)
397 TIGR03219 salicylate_mono sali 42.8 21 0.00046 38.5 3.2 21 325-345 2-22 (414)
398 COG1063 Tdh Threonine dehydrog 42.5 34 0.00074 36.7 4.6 58 295-366 144-201 (350)
399 PTZ00188 adrenodoxin reductase 42.4 30 0.00064 39.8 4.3 33 324-367 40-72 (506)
400 PRK12416 protoporphyrinogen ox 42.1 17 0.00036 39.9 2.3 47 324-370 2-55 (463)
401 PRK05868 hypothetical protein; 42.1 22 0.00047 38.2 3.1 21 324-344 2-22 (372)
402 PRK08020 ubiF 2-octaprenyl-3-m 41.9 20 0.00043 38.1 2.8 32 324-367 6-37 (391)
403 PRK05976 dihydrolipoamide dehy 41.8 22 0.00049 39.3 3.2 32 324-367 5-36 (472)
404 PRK08268 3-hydroxy-acyl-CoA de 41.8 23 0.0005 40.3 3.4 103 407-520 112-223 (507)
405 PF02423 OCD_Mu_crystall: Orni 41.7 66 0.0014 34.2 6.6 106 324-457 129-238 (313)
406 PF03447 NAD_binding_3: Homose 41.7 38 0.00082 30.2 4.1 88 330-441 1-88 (117)
407 PRK04690 murD UDP-N-acetylmura 41.6 24 0.00051 39.5 3.4 23 323-345 8-30 (468)
408 PRK08132 FAD-dependent oxidore 41.4 22 0.00047 40.2 3.1 21 324-344 24-44 (547)
409 COG0665 DadA Glycine/D-amino a 41.4 27 0.00059 36.6 3.7 36 323-370 4-39 (387)
410 TIGR02360 pbenz_hydroxyl 4-hyd 41.3 24 0.00053 38.0 3.3 33 324-368 3-35 (390)
411 PRK14852 hypothetical protein; 41.1 21 0.00046 43.9 3.1 39 316-368 328-366 (989)
412 TIGR03736 PRTRC_ThiF PRTRC sys 40.8 31 0.00068 35.8 3.9 43 324-369 12-56 (244)
413 PRK00048 dihydrodipicolinate r 40.7 1.5E+02 0.0032 30.6 8.8 88 324-442 2-90 (257)
414 TIGR01373 soxB sarcosine oxida 40.4 30 0.00065 37.1 3.9 36 324-369 31-66 (407)
415 PF03486 HI0933_like: HI0933-l 40.4 24 0.00052 39.2 3.1 31 325-367 2-32 (409)
416 PRK08655 prephenate dehydrogen 40.3 84 0.0018 35.1 7.4 91 325-445 2-93 (437)
417 COG3380 Predicted NAD/FAD-depe 40.2 27 0.00059 37.5 3.4 33 325-369 3-35 (331)
418 PF04820 Trp_halogenase: Trypt 40.2 26 0.00057 39.1 3.5 34 325-367 1-34 (454)
419 PRK06292 dihydrolipoamide dehy 40.0 27 0.00058 38.3 3.5 32 324-367 4-35 (460)
420 PF14606 Lipase_GDSL_3: GDSL-l 40.0 26 0.00056 34.9 3.0 56 203-278 51-107 (178)
421 PF02719 Polysacc_synt_2: Poly 39.9 21 0.00046 38.2 2.5 82 326-430 1-93 (293)
422 PRK14477 bifunctional nitrogen 39.8 74 0.0016 39.0 7.4 191 155-416 197-397 (917)
423 TIGR01771 L-LDH-NAD L-lactate 39.7 70 0.0015 33.9 6.4 124 328-473 1-141 (299)
424 PRK10015 oxidoreductase; Provi 39.7 24 0.00051 39.0 3.0 33 324-368 6-38 (429)
425 PRK02472 murD UDP-N-acetylmura 39.6 26 0.00057 38.2 3.3 24 322-345 4-27 (447)
426 PRK06392 homoserine dehydrogen 39.6 1.4E+02 0.003 32.3 8.7 178 325-521 2-196 (326)
427 cd05188 MDR Medium chain reduc 39.5 58 0.0013 31.6 5.4 46 307-367 122-167 (271)
428 PRK10262 thioredoxin reductase 39.3 26 0.00057 36.4 3.1 21 324-344 7-27 (321)
429 PRK13984 putative oxidoreducta 39.3 28 0.0006 40.0 3.6 33 323-367 283-315 (604)
430 PRK08618 ornithine cyclodeamin 39.0 1.2E+02 0.0025 32.5 7.9 113 324-467 128-242 (325)
431 PRK07589 ornithine cyclodeamin 39.0 1.2E+02 0.0027 33.0 8.2 106 324-457 130-239 (346)
432 PRK04308 murD UDP-N-acetylmura 38.8 30 0.00066 38.0 3.7 23 323-345 5-27 (445)
433 PRK06126 hypothetical protein; 38.8 29 0.00062 39.1 3.5 32 324-367 8-39 (545)
434 PRK14694 putative mercuric red 38.7 30 0.00064 38.4 3.6 32 324-367 7-38 (468)
435 COG0654 UbiH 2-polyprenyl-6-me 38.6 26 0.00056 37.7 3.0 32 324-367 3-34 (387)
436 TIGR03169 Nterm_to_SelD pyridi 38.6 62 0.0013 34.2 5.8 41 324-370 146-186 (364)
437 PRK06567 putative bifunctional 38.6 27 0.00058 43.3 3.4 34 322-367 382-415 (1028)
438 PRK07208 hypothetical protein; 38.6 28 0.00061 38.3 3.4 22 324-345 5-26 (479)
439 PRK05249 soluble pyridine nucl 38.5 27 0.00059 38.3 3.2 33 324-368 6-38 (461)
440 PLN02568 polyamine oxidase 38.5 32 0.0007 39.4 3.9 22 324-345 6-27 (539)
441 PRK07190 hypothetical protein; 38.1 28 0.0006 39.2 3.3 33 324-368 6-38 (487)
442 TIGR02733 desat_CrtD C-3',4' d 38.1 31 0.00067 38.3 3.6 36 323-370 1-36 (492)
443 PRK13748 putative mercuric red 37.9 26 0.00057 39.5 3.0 32 324-367 99-130 (561)
444 KOG2012 Ubiquitin activating e 37.8 18 0.00039 43.7 1.7 121 316-468 426-553 (1013)
445 TIGR02437 FadB fatty oxidation 37.7 27 0.00058 41.5 3.2 107 402-519 413-527 (714)
446 PLN02927 antheraxanthin epoxid 37.7 24 0.00051 41.8 2.7 22 324-345 82-103 (668)
447 PRK12775 putative trifunctiona 37.7 29 0.00063 42.9 3.6 33 323-367 430-462 (1006)
448 PF03435 Saccharop_dh: Sacchar 37.7 13 0.00029 39.9 0.7 95 326-441 1-96 (386)
449 TIGR03846 sulfopy_beta sulfopy 37.6 2.8E+02 0.006 27.2 9.8 80 253-344 2-81 (181)
450 TIGR03603 cyclo_dehy_ocin bact 37.5 25 0.00053 37.8 2.6 87 249-367 15-105 (318)
451 PRK15408 autoinducer 2-binding 37.4 1.5E+02 0.0033 31.6 8.5 152 145-333 79-243 (336)
452 PRK11199 tyrA bifunctional cho 37.3 1E+02 0.0022 33.7 7.3 32 324-367 99-131 (374)
453 PLN00112 malate dehydrogenase 37.3 98 0.0021 35.1 7.3 136 324-475 101-256 (444)
454 TIGR01408 Ube1 ubiquitin-activ 37.1 26 0.00057 43.3 3.1 39 316-368 20-58 (1008)
455 PRK01710 murD UDP-N-acetylmura 36.9 30 0.00066 38.4 3.3 23 323-345 14-36 (458)
456 KOG1495 Lactate dehydrogenase 36.9 44 0.00096 35.9 4.2 134 323-478 20-170 (332)
457 PRK13938 phosphoheptose isomer 36.8 95 0.002 31.1 6.5 38 408-447 113-151 (196)
458 PF00732 GMC_oxred_N: GMC oxid 36.7 22 0.00048 36.2 2.1 36 326-372 3-38 (296)
459 PRK06183 mhpA 3-(3-hydroxyphen 36.7 29 0.00063 39.2 3.2 21 324-344 11-31 (538)
460 PRK09466 metL bifunctional asp 36.7 94 0.002 37.7 7.5 107 323-441 458-570 (810)
461 PF12227 DUF3603: Protein of u 36.7 16 0.00035 37.2 1.0 26 174-202 51-76 (214)
462 PRK06617 2-octaprenyl-6-methox 36.3 26 0.00057 37.4 2.6 32 324-367 2-33 (374)
463 PRK06849 hypothetical protein; 36.3 22 0.00048 38.3 2.1 80 323-417 4-85 (389)
464 PLN02985 squalene monooxygenas 36.1 31 0.00068 39.2 3.3 32 324-367 44-75 (514)
465 TIGR01421 gluta_reduc_1 glutat 36.1 29 0.00062 38.5 2.9 32 324-367 3-34 (450)
466 PRK01390 murD UDP-N-acetylmura 36.1 35 0.00076 37.7 3.6 25 321-345 7-31 (460)
467 COG1086 Predicted nucleoside-d 36.0 38 0.00082 39.5 3.9 149 242-417 157-334 (588)
468 PRK08294 phenol 2-monooxygenas 36.0 27 0.00059 40.7 2.9 33 324-367 33-65 (634)
469 PF02254 TrkA_N: TrkA-N domain 35.8 50 0.0011 28.9 3.9 30 326-367 1-30 (116)
470 COG0569 TrkA K+ transport syst 35.8 33 0.00071 34.8 3.1 99 324-448 1-105 (225)
471 PRK02705 murD UDP-N-acetylmura 35.8 30 0.00066 38.0 3.1 22 324-345 1-22 (459)
472 PRK04128 1-(5-phosphoribosyl)- 35.7 1E+02 0.0022 31.5 6.6 94 359-460 44-151 (228)
473 KOG3851 Sulfide:quinone oxidor 35.7 28 0.0006 38.3 2.6 23 324-346 40-62 (446)
474 PF09036 Bcr-Abl_Oligo: Bcr-Ab 35.6 28 0.00061 30.3 2.1 36 64-109 27-66 (79)
475 PLN02366 spermidine synthase 35.5 75 0.0016 34.0 5.9 103 324-442 93-204 (308)
476 PRK06115 dihydrolipoamide dehy 35.4 36 0.00078 37.8 3.6 33 324-368 4-36 (466)
477 TIGR00393 kpsF KpsF/GutQ famil 35.2 1.3E+02 0.0028 30.4 7.4 34 409-445 48-82 (268)
478 PRK06199 ornithine cyclodeamin 35.2 1.4E+02 0.0029 33.0 7.9 88 324-428 156-250 (379)
479 PRK05749 3-deoxy-D-manno-octul 35.0 1.1E+02 0.0025 32.9 7.3 37 399-441 312-349 (425)
480 COG1893 ApbA Ketopantoate redu 35.0 1.2E+02 0.0027 32.3 7.3 22 324-345 1-22 (307)
481 PLN02735 carbamoyl-phosphate s 35.0 48 0.001 41.5 4.9 73 324-413 24-103 (1102)
482 TIGR00441 gmhA phosphoheptose 34.7 1.5E+02 0.0032 28.1 7.1 22 324-346 12-33 (154)
483 cd05006 SIS_GmhA Phosphoheptos 34.6 1.3E+02 0.0029 28.7 6.9 22 408-431 101-122 (177)
484 KOG1399 Flavin-containing mono 34.5 33 0.00071 38.7 3.1 23 323-345 6-28 (448)
485 TIGR01181 dTDP_gluc_dehyt dTDP 34.4 1.3E+02 0.0029 30.2 7.2 78 325-418 1-83 (317)
486 COG1748 LYS9 Saccharopine dehy 34.4 40 0.00086 37.5 3.6 86 324-432 2-90 (389)
487 PRK02006 murD UDP-N-acetylmura 33.7 39 0.00084 37.9 3.5 25 321-345 5-29 (498)
488 TIGR00274 N-acetylmuramic acid 33.6 70 0.0015 34.0 5.2 39 408-448 126-165 (291)
489 COG0421 SpeE Spermidine syntha 33.6 87 0.0019 33.3 5.9 100 324-440 78-186 (282)
490 TIGR02441 fa_ox_alpha_mit fatt 33.5 33 0.00071 41.0 3.0 107 402-519 435-549 (737)
491 PRK06116 glutathione reductase 33.0 36 0.00079 37.3 3.1 31 325-367 6-36 (450)
492 PRK07121 hypothetical protein; 32.9 39 0.00085 37.7 3.4 34 324-369 21-54 (492)
493 PRK12815 carB carbamoyl phosph 32.8 64 0.0014 40.2 5.4 74 324-414 8-88 (1068)
494 TIGR00562 proto_IX_ox protopor 32.8 42 0.00092 36.5 3.6 22 324-345 3-24 (462)
495 PTZ00367 squalene epoxidase; P 32.5 52 0.0011 38.1 4.3 32 313-344 23-54 (567)
496 TIGR01279 DPOR_bchN light-inde 32.5 59 0.0013 35.8 4.7 90 308-416 262-351 (407)
497 PF02645 DegV: Uncharacterised 32.5 3.1E+02 0.0067 28.5 9.7 130 173-357 1-143 (280)
498 TIGR01813 flavo_cyto_c flavocy 32.4 42 0.00092 36.6 3.5 33 326-370 2-35 (439)
499 KOG2013 SMT3/SUMO-activating c 32.3 40 0.00087 38.7 3.3 73 323-413 12-84 (603)
500 TIGR00137 gid_trmFO tRNA:m(5)U 32.0 36 0.00079 38.3 2.9 33 325-369 2-34 (433)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.4e-213 Score=1686.58 Aligned_cols=544 Identities=53% Similarity=0.891 Sum_probs=532.4
Q ss_pred ceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHH
Q 007456 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (603)
Q Consensus 25 ~~~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~ 104 (603)
.+.++++|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|++++ ++|+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhhccceeeeeeeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCcccc
Q 007456 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (603)
Q Consensus 105 L~~rNe~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rIL 184 (603)
||+|||+|||+++++|++|+||||||||||+|||+||++||+|+|||||++|+|||.++|+|||.++|++||||||||||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-
Q 007456 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (603)
Q Consensus 185 GLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~- 263 (603)
||||||++|||||+|||+||||||||+|++||||||||||||++||+||+|+|+||+|++|++||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHH
Q 007456 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (603)
Q Consensus 264 P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~ 343 (603)
|+++||||||+++|||++|+|||+++|||||||||||+|+|||||+|+|+||++|+| ++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd---~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSD---HVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCcccc---ceEEEecCchHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHhcCCChhhhcCeEEEEecCCcccCCCC-CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCC
Q 007456 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (603)
Q Consensus 344 ~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~-~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F 422 (603)
.+|+ ++|+|++||+++|||+|++|||+++|+ +++++|++|||+++++ ++|+|||+.+|||||||+|++||+|
T Consensus 331 ~~m~-~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~------~~L~e~V~~vKPtvLiG~S~~~g~F 403 (582)
T KOG1257|consen 331 MAMV-KEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEI------KDLEEAVKEVKPTVLIGASGVGGAF 403 (582)
T ss_pred HHHH-HcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHH------HHHHHHHHhcCCcEEEecccCCccC
Confidence 9999 679999999999999999999999996 9999999999998764 5899999999999999999999999
Q ss_pred CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHH
Q 007456 423 NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGT 502 (603)
Q Consensus 423 t~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~ 502 (603)
||||||+|++ +|||||||||||||++|||||||||+||+||||||||||||||+|+ ||+|+||||||+|+|||||||+
T Consensus 404 teevl~~Ma~-~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~-gK~~~pgQ~NN~yiFPGi~Lg~ 481 (582)
T KOG1257|consen 404 TEEVLRAMAK-SNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYN-GKVYVPGQGNNAYIFPGIGLGV 481 (582)
T ss_pred CHHHHHHHHh-cCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeC-CcEecccCCceeEecchHHHHH
Confidence 9999999975 9999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCCHHH
Q 007456 503 LLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKEE 582 (603)
Q Consensus 503 ~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ir~Vs~~VA~AVa~~A~~~G~A~~~~~~~~~~~~~~~~~d 582 (603)
+++++++|||+||++||++||+.++++++++|.|||++++||+||.+||++|+++|+++|+|+++ +. |+|
T Consensus 482 vlsg~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~---------p~-P~d 551 (582)
T KOG1257|consen 482 VLSGARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRY---------PE-PKD 551 (582)
T ss_pred HHcCCccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccC---------CC-ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999843 33 789
Q ss_pred HHHHHHhCCccCCCCCCc
Q 007456 583 TVEYVTRSMWFPIYSPLV 600 (603)
Q Consensus 583 l~~~i~~~mw~P~Y~~~v 600 (603)
+++|++++||+|+|++++
T Consensus 552 ~~~~~~~~~y~~~Y~~~~ 569 (582)
T KOG1257|consen 552 KEKFIEESMYNPEYRNSL 569 (582)
T ss_pred HHHHHHhccCCccccccc
Confidence 999999999999999876
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-211 Score=1705.35 Aligned_cols=553 Identities=46% Similarity=0.796 Sum_probs=534.7
Q ss_pred CCCceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHH
Q 007456 22 IPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRI 101 (603)
Q Consensus 22 ~~~~~~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~ 101 (603)
..+...+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+|
T Consensus 7 ~~~~~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~ 76 (563)
T PRK13529 7 KKRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKP----------TDLEKHIY 76 (563)
T ss_pred CCcceeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCC----------ChHHHHHH
Confidence 34455667899999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHhhhccceeeeeeeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCc
Q 007456 102 LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGS 181 (603)
Q Consensus 102 L~~L~~rNe~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~ 181 (603)
|++||+|||+|||+++++|++||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++|||||||
T Consensus 77 L~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~ 156 (563)
T PRK13529 77 LRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGE 156 (563)
T ss_pred HHHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHH
Q 007456 182 RILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA 261 (603)
Q Consensus 182 rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~ 261 (603)
|||||||||++||||||||++|||+||||||++|||||||||||||+||+||+|+||||||++|++||+|+||||++|++
T Consensus 157 rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~ 236 (563)
T PRK13529 157 RILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKR 236 (563)
T ss_pred eeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHH
Q 007456 262 RWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKM 341 (603)
Q Consensus 262 ~~P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~l 341 (603)
+||+++||||||+++|||+||+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+|
T Consensus 237 ~~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d---~riv~~GAGsAgiGia~l 313 (563)
T PRK13529 237 RFPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSD---QRIVFLGAGSAGCGIADQ 313 (563)
T ss_pred hCCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCC---cCCcccCCCHHHHhcccCCcEEEeecCC
Q 007456 342 AVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD---FMGLREGASLLEVVRKVKPHVLLGLSGV 418 (603)
Q Consensus 342 i~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~---~~~~~~~~~L~e~V~~vkptvLIG~S~~ 418 (603)
|+++|+ ++|+|+|||++||||||++|||+++|++|+++|++|||+.++ |.......+|+|||+++|||||||+|++
T Consensus 314 l~~~~~-~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~ 392 (563)
T PRK13529 314 IVAAMV-REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQ 392 (563)
T ss_pred HHHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCC
Confidence 999999 689999999999999999999999999999999999998654 2211234799999999999999999999
Q ss_pred CCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhh
Q 007456 419 GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGI 498 (603)
Q Consensus 419 ~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (603)
+|+|||||||+|++ +|||||||||||||++|||||||||+||+|||||||||||+||+|+ ||+++||||||+||||||
T Consensus 393 ~g~Ft~evv~~Ma~-~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~-G~~~~p~Q~NN~~iFPGi 470 (563)
T PRK13529 393 PGAFTEEIVKEMAA-HCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN-GKTYPIGQCNNAYIFPGL 470 (563)
T ss_pred CCCCCHHHHHHHHh-cCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeC-CeEeccCcCcceeecccc
Confidence 99999999999975 9999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCC
Q 007456 499 GLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHM 578 (603)
Q Consensus 499 glG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ir~Vs~~VA~AVa~~A~~~G~A~~~~~~~~~~~~~~ 578 (603)
|||+++++|++|||+||++||++||+++++++++.+.|||+++++|+||.+||.||+++|+++|+|+ ..
T Consensus 471 glGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~-----------~~ 539 (563)
T PRK13529 471 GLGVIASGARRVTDGMLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLAR-----------ET 539 (563)
T ss_pred hhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCC-----------CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 12
Q ss_pred CHHHHHHHHHhCCccCCCCCCcc
Q 007456 579 SKEETVEYVTRSMWFPIYSPLVH 601 (603)
Q Consensus 579 ~~~dl~~~i~~~mw~P~Y~~~v~ 601 (603)
.++|+++||+++||+|+|+|++.
T Consensus 540 ~~~~~~~~i~~~~w~P~Y~~~~~ 562 (563)
T PRK13529 540 SDEDLEQAIEDNMWQPEYRPYRR 562 (563)
T ss_pred CHHHHHHHHHhcCcCCCCccccC
Confidence 47899999999999999999864
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.9e-208 Score=1680.53 Aligned_cols=551 Identities=47% Similarity=0.827 Sum_probs=527.9
Q ss_pred CCCCceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHH
Q 007456 21 AIPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWR 100 (603)
Q Consensus 21 ~~~~~~~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~ 100 (603)
.++....+..+|.++|+||++|||||||.+||++|||||||||+|+|+|+|++|||.||++++ ++|+||+
T Consensus 8 ~~~~~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~----------~~l~Ky~ 77 (559)
T PTZ00317 8 HSKEKVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIE----------TPINKYQ 77 (559)
T ss_pred ccccccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCC----------ChHHHHH
Confidence 344445567899999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHhhhccceeeeeeeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecC
Q 007456 101 ILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG 180 (603)
Q Consensus 101 ~L~~L~~rNe~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG 180 (603)
||++||+|||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|.++|+|||.++|++||||||
T Consensus 78 ~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG 157 (559)
T PTZ00317 78 FLRNIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDG 157 (559)
T ss_pred HHHHHhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHH
Q 007456 181 SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVH 260 (603)
Q Consensus 181 ~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~ 260 (603)
||||||||||+|||||||||++|||+||||||++|||||||||||||+||+||+||||||+|++|++||+|+||||+||+
T Consensus 158 ~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~ 237 (559)
T PTZ00317 158 SRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVS 237 (559)
T ss_pred ccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHH
Q 007456 261 ARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLK 340 (603)
Q Consensus 261 ~~~P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~ 340 (603)
++||+++||||||+++|||++|+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+
T Consensus 238 ~~~P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d---~riv~~GAGsAgiGia~ 314 (559)
T PTZ00317 238 SRWPNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEE---QRIVFFGAGSAAIGVAN 314 (559)
T ss_pred HhCCCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC-CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCC
Q 007456 341 MAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG 419 (603)
Q Consensus 341 li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~ 419 (603)
||+++|+ ++|+|+|||++||||+|++|||+++|++ |+++|++|||+..+... ....+|+|||+.+|||||||+|+++
T Consensus 315 ll~~~m~-~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~-~~~~~L~e~v~~~KPtvLIG~S~~~ 392 (559)
T PTZ00317 315 NIADLAA-EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAED-SSLKTLEDVVRFVKPTALLGLSGVG 392 (559)
T ss_pred HHHHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccc-ccCCCHHHHHhccCCCEEEEecCCC
Confidence 9999999 6899999999999999999999999965 99999999997532110 1257999999999999999999999
Q ss_pred CCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhH
Q 007456 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499 (603)
Q Consensus 420 g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGig 499 (603)
|+|||||||+|++ +|+|||||||||||++|||||||||+||+|||||||||||+||+|+ ||+++||||||+|||||||
T Consensus 393 g~Ft~evv~~Ma~-~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~-G~~~~p~Q~NN~~iFPGig 470 (559)
T PTZ00317 393 GVFTEEVVKTMAS-NVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLN-GKTIQPSQGNNLYVFPGVG 470 (559)
T ss_pred CCCCHHHHHHHHh-cCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccC-CeeeccCcCcceeeccchh
Confidence 9999999999975 9999999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred HHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCC
Q 007456 500 LGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMS 579 (603)
Q Consensus 500 lG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ir~Vs~~VA~AVa~~A~~~G~A~~~~~~~~~~~~~~~ 579 (603)
||+++++|++|||+||++||++||+++++++++.+.|||+++++|+||.+||+||+++|+++|+|+. ...+.+
T Consensus 471 lG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~-------~~~~~~ 543 (559)
T PTZ00317 471 LGCAIAQPSYIPDEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKN-------KDLPDN 543 (559)
T ss_pred hhhHhhcccCCCHHHHHHHHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCcc-------CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999972 111334
Q ss_pred HHHHHHHHHhCCccCC
Q 007456 580 KEETVEYVTRSMWFPI 595 (603)
Q Consensus 580 ~~dl~~~i~~~mw~P~ 595 (603)
++|+++||+++||+|.
T Consensus 544 ~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 544 RDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHHHHHhcCcCCC
Confidence 5799999999999995
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.6e-207 Score=1678.66 Aligned_cols=541 Identities=58% Similarity=0.954 Sum_probs=527.2
Q ss_pred ccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHHhhhc
Q 007456 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (603)
Q Consensus 29 ~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~r 108 (603)
..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||+|
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L~~L~~~ 108 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALE----------SPLAKYRALMDLQER 108 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cceeeeeeeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCccccccCC
Q 007456 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (603)
Q Consensus 109 Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGD 188 (603)
||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+++++++|||.++|++||||||||||||||
T Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (581)
T PLN03129 109 NERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGD 188 (581)
T ss_pred CcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CCeE
Q 007456 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (603)
Q Consensus 189 lG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P~~~ 267 (603)
||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++||+|+||||++|+++| |+++
T Consensus 189 lG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~ 268 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVL 268 (581)
T ss_pred cCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEeecCCCchHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHH
Q 007456 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 347 (603)
Q Consensus 268 Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~ 347 (603)
||||||+++|||+||+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+||+++|+
T Consensus 269 I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d---~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 269 VQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLAD---QRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred EehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhh---ceEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HhcCCChhhhcCeEEEEecCCcccCCCCC-CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHH
Q 007456 348 RMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426 (603)
Q Consensus 348 ~~~Gls~~eA~~~i~lvD~~GLv~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~ev 426 (603)
+++|+|+|||++||||+|++|||+++|++ |+++|++||++.+ +..+|+|||+++|||||||+|+++|+|||||
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~ev 419 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc------cCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 54699999999999999999999999976 9999999999853 3579999999999999999999999999999
Q ss_pred HHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhC
Q 007456 427 LKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506 (603)
Q Consensus 427 v~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~ 506 (603)
||+|++ ||+|||||||||||+++||||||||+||+|||||||||||+||+|+ ||+++||||||+|||||||||+++++
T Consensus 420 i~~Ma~-~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~ 497 (581)
T PLN03129 420 LEAMAS-LNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYN-GKTFHPGQANNAYIFPGIGLGALLSG 497 (581)
T ss_pred HHHHHh-cCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeC-CeeecCccccceeeccchhhHHHhcC
Confidence 999975 9999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCCHHHHHHH
Q 007456 507 ARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKEETVEY 586 (603)
Q Consensus 507 a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ir~Vs~~VA~AVa~~A~~~G~A~~~~~~~~~~~~~~~~~dl~~~ 586 (603)
|++|||+||++||++||+++++++++.+.|||++++||+||.+||+||+++|+++|+|+. ...++++++|
T Consensus 498 a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~----------~~~~~~~~~~ 567 (581)
T PLN03129 498 AIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATR----------LPRPEDLVEY 567 (581)
T ss_pred CcCCCHHHHHHHHHHHHHhCCcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCC----------CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999972 1236899999
Q ss_pred HHhCCccCCCCCCc
Q 007456 587 VTRSMWFPIYSPLV 600 (603)
Q Consensus 587 i~~~mw~P~Y~~~v 600 (603)
|+++||+|+|+|++
T Consensus 568 i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 568 AESCMYSPVYRPYR 581 (581)
T ss_pred HHHcCcCCCCCCCC
Confidence 99999999999874
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=5.7e-118 Score=940.69 Aligned_cols=427 Identities=35% Similarity=0.502 Sum_probs=380.8
Q ss_pred cccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHHhhhccceeeeeeeccCccccCccccccchHHHHHHHhhcc
Q 007456 65 VISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 144 (603)
Q Consensus 65 v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~rNe~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~ 144 (603)
++|+| |.+|+|.++..+.. .+|+||.|| ++|+++||.++-.|..|+|||+||||||++|++|++.|
T Consensus 1 v~t~~-q~~~~~~~~~~~~~---------~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~ 66 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKT---------EALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDP 66 (432)
T ss_pred CccHH-HHHHHHHHHhhhhh---------hhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCc
Confidence 57899 99999999998873 499999999 89999999999999999999999999999999999888
Q ss_pred cCCCccccccCChhhHHHHHhcCCCCCceEEEEecCccccccCCCCC-CcccccchhHHHHHHhcCCCCCceeeEEeecc
Q 007456 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV-QGIGIPIGKLDVYVAAAGINPQRILPVMLDVG 223 (603)
Q Consensus 145 r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvG 223 (603)
++++ ++.+ ++++|+|||||||||||||||+ +||||||||++|||+||||| +||||||+|
T Consensus 67 ~~~~----~yt~-------------~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~ 126 (432)
T COG0281 67 RKAY----SYTA-------------RGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVG 126 (432)
T ss_pred chhh----hcCC-------------CCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCC
Confidence 8875 3333 3458999999999999999995 99999999999999999999 999999999
Q ss_pred CCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhHHHH
Q 007456 224 TNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA 303 (603)
Q Consensus 224 TnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTaaV~ 303 (603)
|||+ +++||+++...||+..+|||||..-|+.+.+.|||..+|||||||||||+|+
T Consensus 127 ~~~e------------------------i~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~ 182 (432)
T COG0281 127 TNNE------------------------IIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVT 182 (432)
T ss_pred ChHH------------------------HHHHHHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccccHHHHHH
Confidence 9876 7899999999999888877777666666666677777999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC--CChhh
Q 007456 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN--LDPAA 381 (603)
Q Consensus 304 lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~--l~~~k 381 (603)
|||||||||++|++|+| +||||+|||+||+||++||+++|+ ++ ++||++||+|+|+++|++ ++++|
T Consensus 183 lA~llnalk~~gk~l~d---~kiv~~GAGAAgiaia~~l~~~g~-----~~----~~i~~~D~~G~l~~~r~~~~~~~~k 250 (432)
T COG0281 183 LAALLNALKLTGKKLKD---QKIVINGAGAAGIAIADLLVAAGV-----KE----ENIFVVDRKGLLYDGREDLTMNQKK 250 (432)
T ss_pred HHHHHHHHHHhCCCccc---eEEEEeCCcHHHHHHHHHHHHhCC-----Cc----ccEEEEecCCcccCCCcccccchHH
Confidence 99999999999999999 999999999999999999999866 32 799999999999999976 56666
Q ss_pred hcccc-ccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcc
Q 007456 382 APFAK-DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH 460 (603)
Q Consensus 382 ~~fa~-~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~w 460 (603)
..+|+ +..+| .+ .+++ .+||||||+|++ |+||+|+||+|+ ++||||||||||+ |++||||.+|
T Consensus 251 ~~~a~~~~~~~------~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma----~~PiIfalaNP~p--Ei~Pe~a~~~ 314 (432)
T COG0281 251 YAKAIEDTGER------TL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA----KHPIIFALANPTP--EITPEDAKEW 314 (432)
T ss_pred HHHHHhhhccc------cc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc----cCCEEeecCCCCc--cCCHHHHhhc
Confidence 66664 43333 21 3344 569999999997 999999999996 4699999999996 9999999999
Q ss_pred cCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCC
Q 007456 461 AGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSI 540 (603)
Q Consensus 461 t~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l 540 (603)
++|++|+||| |+++|+|+||+|+|||||+|++++||++|||+|++|||+|||+++.++.. .+.|+|++
T Consensus 315 ~~~aaivaTG-----------rsd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~ 382 (432)
T COG0281 315 GDGAAIVATG-----------RSDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPP 382 (432)
T ss_pred CCCCEEEEeC-----------CCCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCC
Confidence 9999999996 56667799999999999999999999999999999999999999887665 78999999
Q ss_pred CCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCCHHHHHHHHHhCCccCCCCCC
Q 007456 541 DSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKEETVEYVTRSMWFPIYSPL 599 (603)
Q Consensus 541 ~~ir~Vs~~VA~AVa~~A~~~G~A~~~~~~~~~~~~~~~~~dl~~~i~~~mw~P~Y~~~ 599 (603)
+++|.+|. ||.||+++|+++|+|+. ...+.++++++++..+|.|.|.++
T Consensus 383 ~d~r~~~~-vA~AVa~aA~~~GvA~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 383 FDPRVISR-VAVAVAKAAMEEGVARR---------PIDDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred CchhHHHH-HHHHHHHHHHHcCCccC---------CCCCHHHHHHHHHHHhcCcccccC
Confidence 99998888 99999999999999982 133467899999999999999875
No 6
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=4.4e-109 Score=938.40 Aligned_cols=363 Identities=29% Similarity=0.447 Sum_probs=332.8
Q ss_pred eeeeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCccccccCCCCCCc
Q 007456 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQG 193 (603)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G 193 (603)
-++.+++.++ |.++|||||+++|+++. +|++.++++.. +.+.|+|||||||||||||+|++|
T Consensus 31 ~~~~~~~~~d-l~~~ytpgv~~~~~~i~-------------~~~~~~~~~t~----~~n~v~vvtdg~~vLGlGd~G~~~ 92 (763)
T PRK12862 31 PTKPLANQRD-LALAYSPGVAAPCLEIA-------------ADPANAARYTS----RGNLVAVVSNGTAVLGLGNIGPLA 92 (763)
T ss_pred ecCCCCCHHH-ceeeeCCchHHHHHHHH-------------hChHhhhhccc----CCcEEEEEechhhhccccccCccc
Confidence 5667777877 79999999999999976 45655554432 567899999999999999999975
Q ss_pred -ccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCe-EEEee
Q 007456 194 -IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFE 271 (603)
Q Consensus 194 -mgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~Iq~E 271 (603)
|||||||++|||+||||| +||+||||+ || ||||++|+++||++ +||||
T Consensus 93 ~~pv~egK~~l~~~~~gi~-------~~~i~~~~~----d~-------------------d~~v~~v~~~~p~f~~i~~E 142 (763)
T PRK12862 93 SKPVMEGKAVLFKKFAGID-------VFDIELDES----DP-------------------DKLVEIVAALEPTFGGINLE 142 (763)
T ss_pred ccchHHHHHHHHHhhcCCC-------ccccccCCC----CH-------------------HHHHHHHHHhCCCcceeeee
Confidence 999999999999999999 555566665 75 99999999999996 99999
Q ss_pred cCCCchHHHHHHHHhhc--CCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHh
Q 007456 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (603)
Q Consensus 272 Df~~~naf~iL~ryr~~--~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~ 349 (603)
||+++|||+||+|||++ +|||||||||||+|+|||||||+|++|++|+| +||||+|||+||+|||+||+.
T Consensus 143 D~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~----- 214 (763)
T PRK12862 143 DIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIED---VKLVASGAGAAALACLDLLVS----- 214 (763)
T ss_pred cccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhh---cEEEEEChhHHHHHHHHHHHH-----
Confidence 99999999999999998 89999999999999999999999999999999 999999999999999999987
Q ss_pred cCCChhhhcCeEEEEecCCcccCCCCC-CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 350 AGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLv~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
.|+++ +||||+|++|||+++|++ |+++|++||++.+ ..+|+|+|++ ||||||+|+ +|+||+|||+
T Consensus 215 ~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~-------~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~ 280 (763)
T PRK12862 215 LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKTD-------ARTLAEVIEG--ADVFLGLSA-AGVLKPEMVK 280 (763)
T ss_pred cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhcc-------cCCHHHHHcC--CCEEEEcCC-CCCCCHHHHH
Confidence 48874 799999999999999975 9999999999852 2689999999 999999999 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCc
Q 007456 429 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (603)
Q Consensus 429 ~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~ 508 (603)
+|+ +|||||||||||+ ||+||||++||+| ||||| ||+++||||||+|+|||||+|+++++|+
T Consensus 281 ~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~at-----------Grs~~p~Q~NN~~~FPgi~~g~l~~~a~ 342 (763)
T PRK12862 281 KMA----PRPLIFALANPTP--EILPEEARAVRPD-AIIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGAT 342 (763)
T ss_pred Hhc----cCCEEEeCCCCcc--cCCHHHHHHhcCC-EEEEE-----------CCcCCCCcccceeeccchhhhHHhcCCe
Confidence 995 8999999999997 9999999999999 99999 5999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCC--------------CCCCccccCCCCcchhhHHHHHHHHHHHHHcCccC
Q 007456 509 FITDGMLQQAAECLASYMTDEE--------------IPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 565 (603)
Q Consensus 509 ~Itd~m~~aAA~aLA~~v~~~~--------------l~~g~l~P~l~~ir~Vs~~VA~AVa~~A~~~G~A~ 565 (603)
+|||+|+++||++||+++++++ +..++|||+..+ ++||..||.||+++|+++|+|+
T Consensus 343 ~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~ 412 (763)
T PRK12862 343 TINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVAT 412 (763)
T ss_pred eCCHHHHHHHHHHHHhcccccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999873 445569997777 6799999999999999999997
No 7
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=3.8e-109 Score=933.99 Aligned_cols=365 Identities=30% Similarity=0.466 Sum_probs=331.1
Q ss_pred eeeeeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCccccccCCCCCC
Q 007456 113 YYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ 192 (603)
Q Consensus 113 fy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~ 192 (603)
--++.+.+.++ |.++|||||+++|+++ +++|+++| ++.+| .+.|+|||||||||||||+|++
T Consensus 26 ~~~~~~~~~~d-l~l~YtPgVa~~c~~i---~~~p~~~~-~~t~r-------------~n~v~VvtdG~~vLGLGdiG~~ 87 (764)
T PRK12861 26 VASKPLVTQRD-LALAYTPGVASACEEI---AADPLNAF-RFTSR-------------GNLVGVITNGTAVLGLGNIGAL 87 (764)
T ss_pred EeccccCChHH-ceeecCCchHHHHHHH---HhChHhhh-hhhcc-------------CcEEEEEecchhhccCCCcCcc
Confidence 35677778877 7999999999999995 56666653 44443 3569999999999999999997
Q ss_pred c-ccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEEEee
Q 007456 193 G-IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFE 271 (603)
Q Consensus 193 G-mgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~Iq~E 271 (603)
| |||||||++|||+||||| +||+|||| +|| |+|| |||+++..+||. ||||
T Consensus 88 a~~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~--i~lE 138 (764)
T PRK12861 88 ASKPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG--INLE 138 (764)
T ss_pred cccchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC--ceee
Confidence 5 999999999999999999 67777777 788 7889 999999999987 9999
Q ss_pred cCCCchHHHHHHHHhhc--CCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHh
Q 007456 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (603)
Q Consensus 272 Df~~~naf~iL~ryr~~--~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~ 349 (603)
||++||||+||+|||++ +|||||||||||+|+|||+|||+|++|++|+| +||||+|||+||+|||++|+.
T Consensus 139 D~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d---~~iv~~GAGaAg~~ia~~l~~----- 210 (764)
T PRK12861 139 DIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKE---VKVVTSGAGAAALACLDLLVD----- 210 (764)
T ss_pred eccCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhH---cEEEEECHhHHHHHHHHHHHH-----
Confidence 99999999999999995 99999999999999999999999999999999 999999999999999999865
Q ss_pred cCCChhhhcCeEEEEecCCcccCCCCC-CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 350 AGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLv~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
.|++++ ||||+||+|||+++|++ |+++|++||++.+ ..||+|+|++ +|||||+|+ +|+||+|+|+
T Consensus 211 ~G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~-------~~~L~eai~~--advliG~S~-~g~ft~e~v~ 276 (764)
T PRK12861 211 LGLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFAQETD-------ARTLAEVIGG--ADVFLGLSA-GGVLKAEMLK 276 (764)
T ss_pred cCCChh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhcC-------CCCHHHHHhc--CCEEEEcCC-CCCCCHHHHH
Confidence 588864 99999999999999976 9999999999852 2689999999 799999998 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCc
Q 007456 429 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (603)
Q Consensus 429 ~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~ 508 (603)
+|+ +|||||||||||+ ||+||||++ |+|+||||| ||+++|||+||+|+|||||+|+++++|+
T Consensus 277 ~Ma----~~PIIFaLsNPtp--E~~pe~a~~-~~g~aivaT-----------Grs~~pnQ~NN~l~FPgi~~Gal~~~a~ 338 (764)
T PRK12861 277 AMA----ARPLILALANPTP--EIFPELAHA-TRDDVVIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGAT 338 (764)
T ss_pred Hhc----cCCEEEECCCCCc--cCCHHHHHh-cCCCEEEEe-----------CCcCCCCccceeeecchhhHHHHHcCCc
Confidence 995 5999999999997 999999987 999999999 6999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCCCC------------CC--ccccCCCCcchhhHHHHHHHHHHHHHcCccC
Q 007456 509 FITDGMLQQAAECLASYMTDEEIP------------KG--ILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 565 (603)
Q Consensus 509 ~Itd~m~~aAA~aLA~~v~~~~l~------------~g--~l~P~l~~ir~Vs~~VA~AVa~~A~~~G~A~ 565 (603)
+|||+|+++||++||+++++++++ .+ .|+|+..+ ++||.+||.||+++|+++|+|+
T Consensus 339 ~I~~~M~~aAa~alA~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~ 408 (764)
T PRK12861 339 TITREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVAT 408 (764)
T ss_pred cCCHHHHHHHHHHHHhhCCcccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999987533 44 45597777 5799999999999999999997
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=2.3e-108 Score=928.25 Aligned_cols=363 Identities=31% Similarity=0.483 Sum_probs=337.7
Q ss_pred eeeeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCccccccCCCCCC-
Q 007456 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ- 192 (603)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~- 192 (603)
-++.+.+.++ |+++|||||+++|+. |+++|+++| ++.+|+ +.|+|||||||||||||+|++
T Consensus 23 ~~~~~~~~~d-l~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a 84 (752)
T PRK07232 23 PTKPLATQRD-LSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALA 84 (752)
T ss_pred eccccCChhh-cceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhcccccccccc
Confidence 5667777777 799999999999994 568888888 777765 459999999999999999997
Q ss_pred cccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCe-EEEee
Q 007456 193 GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFE 271 (603)
Q Consensus 193 GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~Iq~E 271 (603)
|||||+||++|||+||||| ++|+||||+ | +||||++|+.+||++ +||||
T Consensus 85 ~~pv~egK~~l~~~~~gid-------~~~i~~~~~----d-------------------~de~v~~v~~~~p~~g~i~~E 134 (752)
T PRK07232 85 SKPVMEGKGVLFKKFAGID-------VFDIEVDEE----D-------------------PDKFIEAVAALEPTFGGINLE 134 (752)
T ss_pred CccHHHHHHHHHHhhcCCC-------ccccccCCC----C-------------------HHHHHHHHHHhCCCccEEeee
Confidence 9999999999999999999 556666665 5 799999999999998 99999
Q ss_pred cCCCchHHHHHHHHhhc--CCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHh
Q 007456 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (603)
Q Consensus 272 Df~~~naf~iL~ryr~~--~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~ 349 (603)
||++||||+||+|||++ +|||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||+||+.
T Consensus 135 D~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~----- 206 (752)
T PRK07232 135 DIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIED---VKIVVSGAGAAAIACLNLLVA----- 206 (752)
T ss_pred ecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECccHHHHHHHHHHHH-----
Confidence 99999999999999998 69999999999999999999999999999999 999999999999999999986
Q ss_pred cCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 350 AGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
.|++ ++|||++|++|||+++| ++|+++|++||++.+ ..+|+|+|++ ||||||+|+ +|+||+|+|+
T Consensus 207 ~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~-------~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~ 272 (752)
T PRK07232 207 LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD-------ARTLAEAIEG--ADVFLGLSA-AGVLTPEMVK 272 (752)
T ss_pred cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhccCC-------CCCHHHHHcC--CCEEEEcCC-CCCCCHHHHH
Confidence 4887 57999999999999999 579999999999842 3589999999 999999999 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCc
Q 007456 429 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (603)
Q Consensus 429 ~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~ 508 (603)
+|+ +|||||||||||+ ||+||||++||+| +|||| ||+++||||||+|+|||||+|+++++|+
T Consensus 273 ~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~at-----------Grs~~pnQ~NN~~~FPgi~~g~l~~~a~ 334 (752)
T PRK07232 273 SMA----DNPIIFALANPDP--EITPEEAKAVRPD-AIIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGAT 334 (752)
T ss_pred Hhc----cCCEEEecCCCCc--cCCHHHHHHhcCC-EEEEE-----------CCcCCCCcccceeecchhhHHHHHcCCc
Confidence 995 6999999999997 9999999999999 99999 5999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCC--------------CCCCCccccCCCCcchhhHHHHHHHHHHHHHcCccC
Q 007456 509 FITDGMLQQAAECLASYMTDE--------------EIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAE 565 (603)
Q Consensus 509 ~Itd~m~~aAA~aLA~~v~~~--------------~l~~g~l~P~l~~ir~Vs~~VA~AVa~~A~~~G~A~ 565 (603)
+|||+|+++||++||++++++ ++...+|+|++++-| |+..||.||+++|+++|+|+
T Consensus 335 ~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~~~-~~~~va~av~~~a~~~g~a~ 404 (752)
T PRK07232 335 TINEEMKLAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFDPR-LIVKIAPAVAKAAMDSGVAT 404 (752)
T ss_pred cCCHHHHHHHHHHHHhhcccccchhhhhhhccccccCCCCccCCCCCChh-HHHHHHHHHHHHHHhhCccc
Confidence 999999999999999999886 688899999999975 99999999999999999998
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.1e-97 Score=760.19 Aligned_cols=279 Identities=53% Similarity=0.849 Sum_probs=267.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCC
Q 007456 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (603)
Q Consensus 296 iQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~ 375 (603)
|||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||+++|||+|++|||+++|+
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d---~~iv~~GAGsAg~gia~ll~~~~~-~~G~~~eeA~~~i~~vD~~Gll~~~r~ 76 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSD---QRILFLGAGSAGIGIADLIVSAMV-REGLSEEEARKKIWLVDSKGLLTKDRK 76 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-HcCCChhhccCeEEEEcCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHH
Q 007456 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (603)
Q Consensus 376 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpe 455 (603)
+|+++|++||++.++ .+..+|+|+|+++|||||||+|+++|+||+|+||+|++ ||+|||||||||||++||||||
T Consensus 77 ~l~~~~~~~a~~~~~----~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~~E~~pe 151 (279)
T cd05312 77 DLTPFKKPFARKDEE----KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAK-SNERPIIFALSNPTSKAECTAE 151 (279)
T ss_pred cchHHHHHHHhhcCc----ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHh-cCCCCEEEECCCcCCccccCHH
Confidence 899999999998642 13579999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCc
Q 007456 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI 535 (603)
Q Consensus 456 da~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~ 535 (603)
|||+||+|||||||||||+||+|+ ||+++||||||+|+|||||||+++++|++|||+||++||++||+++++++++.+.
T Consensus 152 ~a~~~t~G~ai~ATGsPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~ 230 (279)
T cd05312 152 DAYKWTDGRALFASGSPFPPVEYN-GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGR 230 (279)
T ss_pred HHHHhhcCCEEEEeCCCCCCeeeC-CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCe
Confidence 999999999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHHcCccCCCCCCCCCcCCCCCHHHHHHHHHhCCccC
Q 007456 536 LYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKEETVEYVTRSMWFP 594 (603)
Q Consensus 536 l~P~l~~ir~Vs~~VA~AVa~~A~~~G~A~~~~~~~~~~~~~~~~~dl~~~i~~~mw~P 594 (603)
|||+++++|+||.+||.||+++|+++|+|+. ...++|+++||+++||+|
T Consensus 231 l~P~~~~~r~vs~~VA~aVa~~A~~~gla~~----------~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 231 LYPPLSNIREISAQIAVAVAKYAYEEGLATR----------YPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred eeCCCccHhHHHHHHHHHHHHHHHHcCCCCC----------CCCHHHHHHHHHhCccCC
Confidence 9999999999999999999999999999972 123579999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=2.6e-95 Score=734.67 Aligned_cols=255 Identities=48% Similarity=0.792 Sum_probs=229.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCC
Q 007456 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (603)
Q Consensus 296 iQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~ 375 (603)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|++||++||||+|++|||+++|+
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~G~~~~eA~~~i~lvD~~Gll~~~r~ 76 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSD---QRIVFFGAGSAGIGIARLLVAAMV-REGLSEEEARKRIWLVDSKGLLTDDRE 76 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG----EEEEEB-SHHHHHHHHHHHHHHH-CTTS-HHHHHTTEEEEETTEEEBTTTS
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHH---cEEEEeCCChhHHHHHHHHHHHHH-HhcCCHHHHhccEEEEeccceEeccCc
Confidence 8999999999999999999999999 999999999999999999999999 789999999999999999999999999
Q ss_pred CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHH
Q 007456 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (603)
Q Consensus 376 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpe 455 (603)
+|+++|++|||+.+++. ...||+|+|+++|||||||+|+++|+|||||||+|++ +|||||||||||||++||||||
T Consensus 77 ~l~~~~~~~a~~~~~~~---~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~-~~erPIIF~LSNPt~~aE~~pe 152 (255)
T PF03949_consen 77 DLNPHKKPFARKTNPEK---DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAK-HNERPIIFPLSNPTPKAECTPE 152 (255)
T ss_dssp SHSHHHHHHHBSSSTTT-----SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHH-HSSSEEEEE-SSSCGGSSS-HH
T ss_pred cCChhhhhhhccCcccc---cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhc-cCCCCEEEECCCCCCcccCCHH
Confidence 99999999999876532 2369999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCc
Q 007456 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI 535 (603)
Q Consensus 456 da~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~ 535 (603)
|||+||+|+|||||||||+||+| +||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..++
T Consensus 153 da~~~t~g~ai~AtGSpf~pv~~-~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~ 231 (255)
T PF03949_consen 153 DAYEWTDGRAIFATGSPFPPVEY-NGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGR 231 (255)
T ss_dssp HHHHTTTSEEEEEESS----EEE-TSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTB
T ss_pred HHHhhCCceEEEecCCccCCeee-CCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCc
Confidence 99999999999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhhHHHHHHHHHHHH
Q 007456 536 LYPSIDSIRDITAEVGAAVLRAAV 559 (603)
Q Consensus 536 l~P~l~~ir~Vs~~VA~AVa~~A~ 559 (603)
|||+++++|+||.+||.||+++|+
T Consensus 232 l~P~~~~ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 232 LYPPLFDIREVSARVAAAVAKQAI 255 (255)
T ss_dssp SS-SGGGHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHhHHHHHHHHHHHHHhC
Confidence 999999999999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=6.7e-92 Score=709.08 Aligned_cols=251 Identities=39% Similarity=0.663 Sum_probs=243.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCC
Q 007456 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (603)
Q Consensus 296 iQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~ 375 (603)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||++|++|||+++|+
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~Gls~e~A~~~i~~vD~~Gll~~~r~ 76 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISE---HKVLFNGAGAAALGIANLIVXLXV-KEGISKEEACKRIWXVDRKGLLVKNRK 76 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-hcCCCHHHHhccEEEECCCCeEeCCCC
Confidence 7999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhc---cccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCC
Q 007456 376 NLDPAAAP---FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 452 (603)
Q Consensus 376 ~l~~~k~~---fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~ 452 (603)
+|.++|++ |+++.. +..+|+|+|+.+|||||||+|+++|+||+|+||+|++ ||+|||||||||||++|||
T Consensus 77 ~l~~~~~~~~~~~~~~~------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~aE~ 149 (254)
T cd00762 77 ETCPNEYHLARFANPER------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAE-INERPVIFALSNPTSKAEC 149 (254)
T ss_pred ccCHHHHHHHHHcCccc------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhh-cCCCCEEEECCCcCCcccc
Confidence 89999999 777643 3579999999999999999999999999999999975 9999999999999999999
Q ss_pred CHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCC
Q 007456 453 TAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIP 532 (603)
Q Consensus 453 tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~ 532 (603)
||||||+||+|||||||||||+||+|+ ||+|+|+||||+|||||||||+++++|++|||+||++||++||+++++++++
T Consensus 150 tpe~a~~~t~G~ai~AtGspf~pv~~~-g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~ 228 (254)
T cd00762 150 TAEEAYTATEGRAIFASGSPFHPVELN-GGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLK 228 (254)
T ss_pred CHHHHHhhcCCCEEEEECCCCCCcccC-CceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCC
Confidence 999999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcchhhHHHHHHHHHHH
Q 007456 533 KGILYPSIDSIRDITAEVGAAVLRAA 558 (603)
Q Consensus 533 ~g~l~P~l~~ir~Vs~~VA~AVa~~A 558 (603)
.+.|||++++||+||.+||.||+++|
T Consensus 229 ~~~i~P~~~~ir~vs~~VA~aVa~~a 254 (254)
T cd00762 229 PGRLYPPLFDIQEVSLNIAVAVAKYA 254 (254)
T ss_pred CCceeCCcchhhhHHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1.7e-83 Score=619.24 Aligned_cols=181 Identities=61% Similarity=1.125 Sum_probs=163.1
Q ss_pred hhccceeeeeeeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCccccc
Q 007456 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (603)
Q Consensus 106 ~~rNe~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 185 (603)
|++||+|||+++.+|++|+||||||||||+||++||++||+|+|||+|++|+|+|.++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-C
Q 007456 186 LGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-P 264 (603)
Q Consensus 186 LGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P 264 (603)
|||+|++|||||+||++|||+||||||++||||||||||||++||+||+|+|+||+|++|++||+|+||||+||+++| |
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CeEEEeecCCCchHHHHHHHHh
Q 007456 265 KAIVQFEDFQMKWAFETLERYR 286 (603)
Q Consensus 265 ~~~Iq~EDf~~~naf~iL~ryr 286 (603)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=1.2e-56 Score=446.76 Aligned_cols=225 Identities=32% Similarity=0.503 Sum_probs=205.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCC
Q 007456 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (603)
Q Consensus 296 iQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~ 375 (603)
+||||+|++||+++|+|.+|.++++ +||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~---~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEE---VKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGRE 68 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccC---CEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccc
Confidence 7999999999999999999999999 999999999999999999965 4776 579999999999999884
Q ss_pred -CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCH
Q 007456 376 -NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTA 454 (603)
Q Consensus 376 -~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tp 454 (603)
+|.++|++|+++... . ....+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||++ ||++
T Consensus 69 ~~L~~~~~~la~~~~~-~--~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~----~~~ivf~lsnP~~--e~~~ 136 (226)
T cd05311 69 DDLNPDKNEIAKETNP-E--KTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA----KDPIVFALANPVP--EIWP 136 (226)
T ss_pred hhhhHHHHHHHHHhcc-C--cccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC----CCCEEEEeCCCCC--cCCH
Confidence 599999999986421 0 111479899987 999999999 9999999999994 7999999999996 9999
Q ss_pred HHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCC
Q 007456 455 ADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKG 534 (603)
Q Consensus 455 eda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g 534 (603)
++|++| |..||+| |+++.|+||||+|||||||||+++++|++|||+||++||++||+++++++++.+
T Consensus 137 ~~A~~~--ga~i~a~-----------G~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~ 203 (226)
T cd05311 137 EEAKEA--GADIVAT-----------GRSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEE 203 (226)
T ss_pred HHHHHc--CCcEEEe-----------CCCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCC
Confidence 999999 5558998 588999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcchhhHHHHHHHHHHH
Q 007456 535 ILYPSIDSIRDITAEVGAAVLRAA 558 (603)
Q Consensus 535 ~l~P~l~~ir~Vs~~VA~AVa~~A 558 (603)
.|||++++ |+||..||.+|+++|
T Consensus 204 ~~~P~~~~-~~~~~~va~~v~~~a 226 (226)
T cd05311 204 YIIPTPFD-PRVVPRVATAVAKAA 226 (226)
T ss_pred cccCCCCc-hhHHHHHHHHHHHhC
Confidence 99999999 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.72 E-value=1.1e-07 Score=81.50 Aligned_cols=86 Identities=27% Similarity=0.385 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
+||.++++++..+.+..+.+++. .+++|+|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~---~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r----------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKG---KTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR----------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCC---CEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC-----------
Confidence 68999999999999999988888 9999999999999999988774 2 147998888
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LS 444 (603)
|+||++++.++.|+++.++.| ++.|+||.++
T Consensus 56 --------------------------------di~i~~~~~~~~~~~~~~~~~----~~~~~v~~~a 86 (86)
T cd05191 56 --------------------------------DILVTATPAGVPVLEEATAKI----NEGAVVIDLA 86 (86)
T ss_pred --------------------------------CEEEEcCCCCCCchHHHHHhc----CCCCEEEecC
Confidence 899999999999998856655 5799999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.51 E-value=0.0019 Score=71.28 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=103.1
Q ss_pred CChhhhhHhHHHHHHHHHHhCCCeEEEeecCCCchHHHH---------------------HHHHhh-------cCCccc-
Q 007456 243 LEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFET---------------------LERYRK-------RFCMFN- 293 (603)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~P~~~Iq~EDf~~~naf~i---------------------L~ryr~-------~~~~Fn- 293 (603)
.+-++|+..+++.+ ...-|+.+| |.+..-...+ ..|||. .+|+||
T Consensus 106 ~~~~ey~~~~~~~l---~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~v 179 (425)
T PRK05476 106 ETLEEYWECIERAL---DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINV 179 (425)
T ss_pred CCHHHHHHHHHHHh---cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEec
Confidence 35678887777765 122365555 5555444433 245543 389998
Q ss_pred ---------cCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 007456 294 ---------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL 364 (603)
Q Consensus 294 ---------DDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lv 364 (603)
|...||+--++-|+.. .++..+.. .+++|+|+|..|.++|..+... |. +++++
T Consensus 180 n~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~G---k~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~ 241 (425)
T PRK05476 180 NDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAG---KVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVT 241 (425)
T ss_pred CCcccCccccccHHHHhhhHHHHHH---hccCCCCC---CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEE
Confidence 6678898777666654 34666667 9999999999999998887653 32 58888
Q ss_pred ecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007456 365 DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (603)
Q Consensus 365 D~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LS 444 (603)
|.+- .+...+.... . ...++.|+++. .|++|-+++..++|+.+.++.|. +.-|++-.+
T Consensus 242 d~dp-----------~ra~~A~~~G-~----~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK----~GailiNvG 299 (425)
T PRK05476 242 EVDP-----------ICALQAAMDG-F----RVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK----DGAILANIG 299 (425)
T ss_pred cCCc-----------hhhHHHHhcC-C----EecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC----CCCEEEEcC
Confidence 8641 1111111100 0 12358888876 79999988877889999999993 344665555
Q ss_pred CCCC
Q 007456 445 NPTM 448 (603)
Q Consensus 445 NPt~ 448 (603)
.+..
T Consensus 300 ~~d~ 303 (425)
T PRK05476 300 HFDN 303 (425)
T ss_pred CCCC
Confidence 5443
No 16
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.22 E-value=0.0046 Score=68.04 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=92.2
Q ss_pred cCCccc----------cCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhh
Q 007456 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (603)
Q Consensus 288 ~~~~Fn----------DDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA 357 (603)
.+|+|+ |.-.||+--++-+++. .++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~G---ktVvViG~G~IG~~va~~ak~~-----Ga----- 226 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAG---KVAVVAGYGDVGKGCAQSLRGQ-----GA----- 226 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 368874 6678999988877765 56666777 9999999999999998877553 43
Q ss_pred cCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCC
Q 007456 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (603)
Q Consensus 358 ~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~er 437 (603)
+++++|.+ +.+..+|+... ....++.|+++. .|++|-+++.+++|+++.++.|. ..
T Consensus 227 --~ViV~d~d-----------~~R~~~A~~~G-----~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk----~G 282 (413)
T cd00401 227 --RVIVTEVD-----------PICALQAAMEG-----YEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK----DG 282 (413)
T ss_pred --EEEEEECC-----------hhhHHHHHhcC-----CEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 47777753 22233343211 012346788876 69999999888899999999883 45
Q ss_pred CeEEecCCCCCccCCCHHHHhc
Q 007456 438 PAIFAMSNPTMNAECTAADAFK 459 (603)
Q Consensus 438 PIIF~LSNPt~~aE~tpeda~~ 459 (603)
-+|.-.+.+. .|+...+...
T Consensus 283 gilvnvG~~~--~eId~~~L~~ 302 (413)
T cd00401 283 AIVCNIGHFD--VEIDVKGLKE 302 (413)
T ss_pred cEEEEeCCCC--CccCHHHHHh
Confidence 5776677663 4888887664
No 17
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.78 E-value=0.043 Score=61.57 Aligned_cols=122 Identities=19% Similarity=0.246 Sum_probs=81.7
Q ss_pred CCccccCCchhHHHH-------HHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007456 289 FCMFNDDIQGTAGVA-------LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (603)
Q Consensus 289 ~~~FnDDiQGTaaV~-------lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i 361 (603)
+|++|=+--.|-++. ++.+=+.+|.++..+.. .+++|+|.|..|.++|..+... |. ++
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaG---KtVgVIG~G~IGr~vA~rL~a~-----Ga-------~V 280 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAG---KTVVVCGYGDVGKGCAQALRGF-----GA-------RV 280 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EE
Confidence 788875554443332 44445556777777777 9999999999999999988653 43 57
Q ss_pred EEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007456 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (603)
Q Consensus 362 ~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF 441 (603)
+++|++-. + .+. ... ..- ...++.|+++. .|++|-+.+..+.|+++.++.|. +.-|+.
T Consensus 281 iV~e~dp~----~-a~~-A~~----~G~------~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK----pGAiLI 338 (476)
T PTZ00075 281 VVTEIDPI----C-ALQ-AAM----EGY------QVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK----NNAIVG 338 (476)
T ss_pred EEEeCCch----h-HHH-HHh----cCc------eeccHHHHHhc--CCEEEECCCcccccCHHHHhccC----CCcEEE
Confidence 77766411 0 000 000 110 12468888876 79999888878999999999993 456777
Q ss_pred ecCCCC
Q 007456 442 AMSNPT 447 (603)
Q Consensus 442 ~LSNPt 447 (603)
-.+...
T Consensus 339 NvGr~d 344 (476)
T PTZ00075 339 NIGHFD 344 (476)
T ss_pred EcCCCc
Confidence 666664
No 18
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.76 E-value=0.016 Score=63.83 Aligned_cols=128 Identities=22% Similarity=0.303 Sum_probs=85.9
Q ss_pred cCCccc----------cCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhh
Q 007456 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (603)
Q Consensus 288 ~~~~Fn----------DDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA 357 (603)
.+|+|+ |.-.||+--++-+++ |.++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~G---k~VvViG~G~IG~~vA~~ak~~-----Ga----- 219 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAG---KTVVVAGYGWCGKGIAMRARGM-----GA----- 219 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCc---CEEEEECCCHHHHHHHHHHhhC-----cC-----
Confidence 378886 667899877766655 456666667 9999999999999999877653 32
Q ss_pred cCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCC
Q 007456 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (603)
Q Consensus 358 ~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~er 437 (603)
+++++|.+- .+...|+... ....++.|+++. .|++|-+++..++++++.++.|. +.
T Consensus 220 --~ViV~d~dp-----------~r~~~A~~~G-----~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK----~G 275 (406)
T TIGR00936 220 --RVIVTEVDP-----------IRALEAAMDG-----FRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK----DG 275 (406)
T ss_pred --EEEEEeCCh-----------hhHHHHHhcC-----CEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 588887641 1111121110 012357888876 69999888777888888888883 45
Q ss_pred CeEEecCCCCCccCCCHHHH
Q 007456 438 PAIFAMSNPTMNAECTAADA 457 (603)
Q Consensus 438 PIIF~LSNPt~~aE~tpeda 457 (603)
-||.-.+.... |+.-++.
T Consensus 276 ailiN~G~~~~--eId~~aL 293 (406)
T TIGR00936 276 AIVANIGHFDV--EIDVKAL 293 (406)
T ss_pred cEEEEECCCCc--eeCHHHH
Confidence 57776666643 5555444
No 19
>PLN02494 adenosylhomocysteinase
Probab=96.70 E-value=0.017 Score=64.59 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=87.0
Q ss_pred cCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCC
Q 007456 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (603)
Q Consensus 294 DDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~ 373 (603)
|...||+--++-|++ |.|+..+.. .+++|+|.|..|.++|..+... |. +|+++|.+..
T Consensus 231 Dn~yGtgqS~~d~i~---r~t~i~LaG---KtVvViGyG~IGr~vA~~aka~-----Ga-------~VIV~e~dp~---- 288 (477)
T PLN02494 231 DNLYGCRHSLPDGLM---RATDVMIAG---KVAVICGYGDVGKGCAAAMKAA-----GA-------RVIVTEIDPI---- 288 (477)
T ss_pred hccccccccHHHHHH---HhcCCccCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCch----
Confidence 446788887877777 467776667 9999999999999999988543 43 5887776421
Q ss_pred CCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCC
Q 007456 374 RKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECT 453 (603)
Q Consensus 374 r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~t 453 (603)
+...|.... + ...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.+.. |+.
T Consensus 289 -------r~~eA~~~G-~----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK----~GAiLiNvGr~~~--eID 348 (477)
T PLN02494 289 -------CALQALMEG-Y----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK----NNAIVCNIGHFDN--EID 348 (477)
T ss_pred -------hhHHHHhcC-C----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC----CCCEEEEcCCCCC--ccC
Confidence 111111100 0 11358888876 79999877777888999999993 5678888888755 777
Q ss_pred HHHHhcc
Q 007456 454 AADAFKH 460 (603)
Q Consensus 454 peda~~w 460 (603)
-++..++
T Consensus 349 ~~aL~~~ 355 (477)
T PLN02494 349 MLGLETY 355 (477)
T ss_pred HHHHhhc
Confidence 7666554
No 20
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.54 E-value=0.024 Score=57.19 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
||-=+..++-.+++..+.+|+. .||+|.|-|..|.++|++|.+. |. +-+.+.|++|-+++. .|+
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~--Gld 65 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEG---LTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP--GIT 65 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC--CCC
Confidence 3444556677778888877777 9999999999999999999774 33 468899999988887 555
Q ss_pred hhh-hccccccCCcCCcc--cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007456 379 PAA-APFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (603)
Q Consensus 379 ~~k-~~fa~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~tp 454 (603)
..+ ..+.+........+ +..+- +.+..++.||||=++. .+..|++..+.+ .-++|..-+| |++. .+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~DVlipaA~-~~~i~~~~a~~l-----~a~~V~e~AN~p~t~---~a 135 (217)
T cd05211 66 TEELINYAVALGGSARVKVQDYFPG-EAILGLDVDIFAPCAL-GNVIDLENAKKL-----KAKVVAEGANNPTTD---EA 135 (217)
T ss_pred HHHHHHHHHhhCCccccCcccccCc-ccceeccccEEeeccc-cCccChhhHhhc-----CccEEEeCCCCCCCH---HH
Confidence 432 22222111100000 11111 2344557899997775 789999999998 3678998888 8873 45
Q ss_pred HHHhc
Q 007456 455 ADAFK 459 (603)
Q Consensus 455 eda~~ 459 (603)
++.++
T Consensus 136 ~~~L~ 140 (217)
T cd05211 136 LRILH 140 (217)
T ss_pred HHHHH
Confidence 66655
No 21
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.45 E-value=0.012 Score=64.55 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=80.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 297 QGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
.|.-+|..+++--|.+..+. +.+ .+++|+|+|..|..++..+... |. .+|+++|+..
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~---~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~-------- 214 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKG---KKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY-------- 214 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH--------
Confidence 55666677776666666553 555 9999999999999988887653 43 4788888741
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCC-eEEecCCCCC
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKP-AIFAMSNPTM 448 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~erP-IIF~LSNPt~ 448 (603)
+....+++.-.. .. -...++.+++.. .|++|-+++.+ ..+++++++.+.. ...+| +|+=+++|-.
T Consensus 215 --~ra~~la~~~g~-~~-i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~-~~~~~~~viDla~Prd 281 (417)
T TIGR01035 215 --ERAEDLAKELGG-EA-VKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALR-ERTRPLFIIDIAVPRD 281 (417)
T ss_pred --HHHHHHHHHcCC-eE-eeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHh-cCCCCeEEEEeCCCCC
Confidence 111223322100 00 011357788876 79999887644 6799999998742 11256 8999999985
No 22
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.45 E-value=0.011 Score=63.52 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
|+++...++--+.+..|..|++ .+++|.|| |+.|--+|++|... .|. ++++++++. . ..+
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~---k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~--~rl 194 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSK---ATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----Q--ERL 194 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCC---CEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----H--HHH
Confidence 6788888888888888888888 99999999 89999999988652 232 478888764 1 123
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCC--CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
...+.++.+. ...+|.+++.. +|++|-+++.+.. .+++.++ +.=+|+=++.|-.
T Consensus 195 ~~La~el~~~--------~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~-------~~~~viDiAvPRD 250 (340)
T PRK14982 195 QELQAELGGG--------KILSLEEALPE--ADIVVWVASMPKGVEIDPETLK-------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHHHhccc--------cHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC-------CCeEEEEecCCCC
Confidence 3323333211 12368888876 8999987776433 6665441 2335666899976
No 23
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.37 E-value=0.021 Score=60.07 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=84.6
Q ss_pred chHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChh
Q 007456 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (603)
Q Consensus 276 ~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~ 355 (603)
.+|+++=++.|.+.-+. .|-.+|+.+++-.|....|. +.. .+|+|+|+|..|..++..+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~---~~V~ViGaG~iG~~~a~~L~~~-----g~--- 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKG---KKVLVIGAGEMGELAAKHLAAK-----GV--- 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECcHHHHHHHHHHHHHc-----CC---
Confidence 46777777777664444 33455665665555555554 556 9999999999999888877652 32
Q ss_pred hhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCC
Q 007456 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS 435 (603)
Q Consensus 356 eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~ 435 (603)
++|+++|+.. +....+|+.-.... ....++.++++. .|++|-+++.+.. +++++.+.+...
T Consensus 203 ---~~V~v~~r~~----------~ra~~la~~~g~~~--~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~ 263 (311)
T cd05213 203 ---AEITIANRTY----------ERAEELAKELGGNA--VPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRS 263 (311)
T ss_pred ---CEEEEEeCCH----------HHHHHHHHHcCCeE--EeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCC
Confidence 4799888741 11122333211000 011357788876 7999998876555 677776543121
Q ss_pred -CCCeEEecCCCCC
Q 007456 436 -VKPAIFAMSNPTM 448 (603)
Q Consensus 436 -erPIIF~LSNPt~ 448 (603)
..-+|+=||||-.
T Consensus 264 ~~~~~viDlavPrd 277 (311)
T cd05213 264 GKPRLIVDLAVPRD 277 (311)
T ss_pred CCCeEEEEeCCCCC
Confidence 2337778999876
No 24
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.01 E-value=0.036 Score=60.84 Aligned_cols=121 Identities=19% Similarity=0.266 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
+..+|+.+++--|.+..+ ++.. .+++|+|+|..|..++..+.. .|. ++|+++|+..
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~---~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~--------- 216 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSG---KKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL--------- 216 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccC---CEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH---------
Confidence 355666666544444443 4556 999999999999999887754 344 4799888741
Q ss_pred ChhhhccccccC-CcCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcC-CCCCeEEecCCCCC
Q 007456 378 DPAAAPFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD-SVKPAIFAMSNPTM 448 (603)
Q Consensus 378 ~~~k~~fa~~~~-~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~-~erPIIF~LSNPt~ 448 (603)
+....+++... .. ....++.+++.. .|++|.+++.+ ..+++++++.+...- ....+|+=||+|-.
T Consensus 217 -~ra~~la~~~g~~~---~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prd 284 (423)
T PRK00045 217 -ERAEELAEEFGGEA---IPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRD 284 (423)
T ss_pred -HHHHHHHHHcCCcE---eeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCC
Confidence 11112332210 00 011356677765 79999988755 578999999874211 12358889999985
No 25
>PLN02477 glutamate dehydrogenase
Probab=96.00 E-value=0.21 Score=55.25 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=125.7
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCeEEEeecCCCchH--HHHHHHHhhc----------CCcc----ccCCchhHHHHHH
Q 007456 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----------FCMF----NDDIQGTAGVALA 305 (603)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~Iq~EDf~~~na--f~iL~ryr~~----------~~~F----nDDiQGTaaV~lA 305 (603)
++..|-..+...|+.++.... |..-|-=+|++..-. --+.++|+.. -|+. .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456778889999999998876 655566688876422 1245777651 1211 2223447777778
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEecCCcccCCCCCCChhhh-c
Q 007456 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-P 383 (603)
Q Consensus 306 gll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~-lvD~~GLv~~~r~~l~~~k~-~ 383 (603)
++-.+++..|.+|+. .||+|.|.|..|.++|++|.+. |. +|+ +.|++|-|++.. .|+.... .
T Consensus 192 ~~~~~~~~~g~~l~g---~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~-GLD~~~L~~ 255 (410)
T PLN02477 192 ATEALLAEHGKSIAG---QTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN-GLDIPALRK 255 (410)
T ss_pred HHHHHHHHcCCCccC---CEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC-CCCHHHHHH
Confidence 888888888888877 9999999999999999988653 43 566 899999998865 3442221 1
Q ss_pred cccccCCcCCc--ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHHhc
Q 007456 384 FAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFK 459 (603)
Q Consensus 384 fa~~~~~~~~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~tpeda~~ 459 (603)
+.+....+.+. ....+-.|++. .+.||||=+. .++..|++.+..+ .-.||.--+| |+. .| +++.++
T Consensus 256 ~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i-----~ak~I~egAN~p~t-~e--a~~~L~ 324 (410)
T PLN02477 256 HVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV-----KAKFIVEAANHPTD-PE--ADEILR 324 (410)
T ss_pred HHHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc-----CCcEEEeCCCCCCC-HH--HHHHHH
Confidence 11111000000 01123334443 3789999666 5899999999987 4679999998 763 23 556654
No 26
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.91 E-value=0.044 Score=57.56 Aligned_cols=109 Identities=17% Similarity=0.289 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-hHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+.+-+|-.|++..++-.+.+++. +++|++|+|- +|..+|.+|... | | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~G---k~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~--------- 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAG---KHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR--------- 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC---------
Confidence 45777889999999999998888 9999999997 999999988652 3 2 58888752
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEec-CCCCC--cc-CC
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM-SNPTM--NA-EC 452 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~L-SNPt~--~a-E~ 452 (603)
..+|.+.+++ .|++|-+.+.++.|+.++++ +.-+|+=. .||.. .+ ++
T Consensus 193 --------------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk-------~gavViDvg~n~~~~~~~GDv 243 (283)
T PRK14192 193 --------------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK-------QGAVVVDAGFHPRDGGGVGDI 243 (283)
T ss_pred --------------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC-------CCCEEEEEEEeecCCCCcccc
Confidence 0247777765 89999999989999987764 34456544 36631 11 45
Q ss_pred CHHHHhc
Q 007456 453 TAADAFK 459 (603)
Q Consensus 453 tpeda~~ 459 (603)
.++++.+
T Consensus 244 d~~~~~~ 250 (283)
T PRK14192 244 ELQGIEE 250 (283)
T ss_pred cHHHhhc
Confidence 5555544
No 27
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.75 E-value=0.011 Score=54.74 Aligned_cols=106 Identities=19% Similarity=0.337 Sum_probs=65.0
Q ss_pred CCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccC
Q 007456 318 LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREG 397 (603)
Q Consensus 318 l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~ 397 (603)
+.+|.+.|++|+|||.+|-+++..|.+. |. ++|++++|. .+| .......|- ...+. ....
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r--a~~l~~~~~--~~~~~-~~~~ 66 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER--AEALAEEFG--GVNIE-AIPL 66 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH--HHHHHHHHT--GCSEE-EEEG
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH--HHHHHHHcC--ccccc-eeeH
Confidence 3345559999999999988888777663 54 579999874 111 222222231 00000 0122
Q ss_pred CCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 398 ASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 398 ~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
.++.+.+.. .|++|-+++.+ -.++++.++.... ...+||=||+|-.
T Consensus 67 ~~~~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~---~~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 67 EDLEEALQE--ADIVINATPSGMPIITEEMLKKASK---KLRLVIDLAVPRD 113 (135)
T ss_dssp GGHCHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCH---HCSEEEES-SS-S
T ss_pred HHHHHHHhh--CCeEEEecCCCCcccCHHHHHHHHh---hhhceeccccCCC
Confidence 456677776 79999988755 3789988876521 1249999999976
No 28
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.74 E-value=0.055 Score=52.66 Aligned_cols=85 Identities=15% Similarity=0.316 Sum_probs=62.7
Q ss_pred HHHhCCCCCCCCCceEEEeCcch-hHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccC
Q 007456 311 VRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG 389 (603)
Q Consensus 311 ~r~tg~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~ 389 (603)
++-...+|.+ .+++|+|+|. .|..+|..|... |. ++++++++-
T Consensus 35 ~~~~~~~l~g---k~vlViG~G~~~G~~~a~~L~~~-----g~-------~V~v~~r~~--------------------- 78 (168)
T cd01080 35 LKRYGIDLAG---KKVVVVGRSNIVGKPLAALLLNR-----NA-------TVTVCHSKT--------------------- 78 (168)
T ss_pred HHHcCCCCCC---CEEEEECCcHHHHHHHHHHHhhC-----CC-------EEEEEECCc---------------------
Confidence 3333445555 9999999997 598888887653 32 588888640
Q ss_pred CcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 390 DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 390 ~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
..|.+.++. .|++|.+++.+..|+++.++ +.-+|+=++.|-.
T Consensus 79 --------~~l~~~l~~--aDiVIsat~~~~ii~~~~~~-------~~~viIDla~prd 120 (168)
T cd01080 79 --------KNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK-------PGAVVIDVGINRV 120 (168)
T ss_pred --------hhHHHHHhh--CCEEEEcCCCCceecHHHcc-------CCeEEEEccCCCc
Confidence 136777877 79999999988899998654 2468888888874
No 29
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.69 E-value=0.09 Score=55.13 Aligned_cols=138 Identities=17% Similarity=0.281 Sum_probs=88.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCC
Q 007456 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (603)
Q Consensus 296 iQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~ 375 (603)
+..+-+++=.++.-+++.++..+.. .+++|+|+|..|..+|+.+... |. +++++|++. +
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~g---k~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~------~ 185 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHG---SNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS------A 185 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCC---CEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH------H
Confidence 3455566655666777777777777 9999999999999999988653 42 588888741 0
Q ss_pred CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007456 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (603)
Q Consensus 376 ~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~tp 454 (603)
.+...+ .+ ....+ ...+|.+.++. .|++|=+. ..+.++++.++.|. +.-+|+=+|. |- ++..
T Consensus 186 ~~~~~~-~~--g~~~~----~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k----~~aliIDlas~Pg---~tdf 248 (287)
T TIGR02853 186 DLARIT-EM--GLIPF----PLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP----KHAVIIDLASKPG---GTDF 248 (287)
T ss_pred HHHHHH-HC--CCeee----cHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC----CCeEEEEeCcCCC---CCCH
Confidence 111111 00 00000 12357788876 79999654 35788999999883 4567776654 53 4667
Q ss_pred HHHhcccCCcEEEEcCCC
Q 007456 455 ADAFKHAGENIVFASGSP 472 (603)
Q Consensus 455 eda~~wt~Grai~AtGSP 472 (603)
+.|.+ -.-+++.+-|-|
T Consensus 249 ~~Ak~-~G~~a~~~~glP 265 (287)
T TIGR02853 249 EYAKK-RGIKALLAPGLP 265 (287)
T ss_pred HHHHH-CCCEEEEeCCCC
Confidence 55544 345777777644
No 30
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.44 E-value=0.29 Score=47.78 Aligned_cols=121 Identities=22% Similarity=0.336 Sum_probs=75.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 297 QGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
.||+--++-|++. .|+..|.- .++|++|-|--|-|+|+.+..... ++.++|.+
T Consensus 3 yG~g~S~~d~i~r---~t~~~l~G---k~vvV~GYG~vG~g~A~~lr~~Ga------------~V~V~e~D--------- 55 (162)
T PF00670_consen 3 YGTGQSLVDGIMR---ATNLMLAG---KRVVVIGYGKVGKGIARALRGLGA------------RVTVTEID--------- 55 (162)
T ss_dssp HHHHHHHHHHHHH---HH-S--TT---SEEEEE--SHHHHHHHHHHHHTT-------------EEEEE-SS---------
T ss_pred cccchhHHHHHHh---cCceeeCC---CEEEEeCCCcccHHHHHHHhhCCC------------EEEEEECC---------
Confidence 4777777777764 57776666 999999999999999999877533 67766653
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAAD 456 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tped 456 (603)
|.+.-=|.-+ -+ +..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ...|+.-+.
T Consensus 56 --Pi~alqA~~d-Gf----~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk----dgail~n~Gh--~d~Eid~~~ 120 (162)
T PF00670_consen 56 --PIRALQAAMD-GF----EVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK----DGAILANAGH--FDVEIDVDA 120 (162)
T ss_dssp --HHHHHHHHHT-T-----EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-----TTEEEEESSS--STTSBTHHH
T ss_pred --hHHHHHhhhc-Cc----EecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc----CCeEEeccCc--CceeEeecc
Confidence 2221111110 01 12479999987 89999999988999999999993 4556654442 234777766
Q ss_pred Hhc
Q 007456 457 AFK 459 (603)
Q Consensus 457 a~~ 459 (603)
.-+
T Consensus 121 L~~ 123 (162)
T PF00670_consen 121 LEA 123 (162)
T ss_dssp HHT
T ss_pred ccc
Confidence 544
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.36 E-value=0.11 Score=54.62 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=78.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhcc
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~f 384 (603)
+++..+++..+..+.. .|++|+|+|.+|..++..+... |. +++++|++- .+...
T Consensus 137 gav~~a~~~~~~~l~g---~kvlViG~G~iG~~~a~~L~~~-----Ga-------~V~v~~r~~-----------~~~~~ 190 (296)
T PRK08306 137 GAIMMAIEHTPITIHG---SNVLVLGFGRTGMTLARTLKAL-----GA-------NVTVGARKS-----------AHLAR 190 (296)
T ss_pred HHHHHHHHhCCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEECCH-----------HHHHH
Confidence 3455677777777777 9999999999998888877653 42 689888861 11111
Q ss_pred cccc-CCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCC
Q 007456 385 AKDP-GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE 463 (603)
Q Consensus 385 a~~~-~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~G 463 (603)
++.. ..+ ....+|.+.++. .|++|-++ ....+++++++.|. +..+|+=++...- .|..+.|.+ .|
T Consensus 191 ~~~~G~~~---~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~----~g~vIIDla~~pg--gtd~~~a~~--~G 256 (296)
T PRK08306 191 ITEMGLSP---FHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP----PEALIIDLASKPG--GTDFEYAEK--RG 256 (296)
T ss_pred HHHcCCee---ecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC----CCcEEEEEccCCC--CcCeeehhh--CC
Confidence 1110 000 012357788876 79999865 45778999999994 4667775554322 244443332 33
Q ss_pred -cEEEEcCCC
Q 007456 464 -NIVFASGSP 472 (603)
Q Consensus 464 -rai~AtGSP 472 (603)
+++.++|-|
T Consensus 257 v~~~~~~~lp 266 (296)
T PRK08306 257 IKALLAPGLP 266 (296)
T ss_pred eEEEEECCCC
Confidence 344456533
No 32
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.65 E-value=0.09 Score=55.49 Aligned_cols=140 Identities=18% Similarity=0.284 Sum_probs=94.8
Q ss_pred HHHHHHHHHhC--CCe---EEEeecCCCchHHHHHHHHh--hcC---------CccccCCchhHHHHHHHHHHHHHHhCC
Q 007456 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYR--KRF---------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (603)
Q Consensus 253 defv~av~~~~--P~~---~Iq~EDf~~~naf~iL~ryr--~~~---------~~FnDDiQGTaaV~lAgll~A~r~tg~ 316 (603)
+||.+.++++- |++ ++|+==...-+..++++... +.+ ..|.++ .+-.-+|-+|++.-++-.+.
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~ai~~ll~~~~i 154 (286)
T PRK14175 76 EEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDE-QTFVPCTPLGIMEILKHADI 154 (286)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCC-CCCCCCcHHHHHHHHHHcCC
Confidence 46777777663 543 66654222333333443332 111 122222 34567788999999999999
Q ss_pred CCCCCCCceEEEeCcch-hHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 ~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
+|+. .+++++|+|. .|..+|.+|... | ..+++++++.
T Consensus 155 ~l~G---k~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t--------------------------- 192 (286)
T PRK14175 155 DLEG---KNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS--------------------------- 192 (286)
T ss_pred CCCC---CEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc---------------------------
Confidence 8888 9999999988 999999998652 3 2588887641
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNP 446 (603)
.+|.+.+++ .|++|.+.+.++.|++++++ +.-+|+=++.|
T Consensus 193 --~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk-------~gavVIDvGi~ 232 (286)
T PRK14175 193 --KDMASYLKD--ADVIVSAVGKPGLVTKDVVK-------EGAVIIDVGNT 232 (286)
T ss_pred --hhHHHHHhh--CCEEEECCCCCcccCHHHcC-------CCcEEEEcCCC
Confidence 137778888 79999999999999998764 33566666553
No 33
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.59 E-value=1.3 Score=49.71 Aligned_cols=189 Identities=19% Similarity=0.199 Sum_probs=126.2
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCeEEEeecCCCchHH---HHHHHHhhc---C-Ccccc---C-------CchhHHHHH
Q 007456 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWAF---ETLERYRKR---F-CMFND---D-------IQGTAGVAL 304 (603)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~Iq~EDf~~~naf---~iL~ryr~~---~-~~FnD---D-------iQGTaaV~l 304 (603)
.+..|-..|...||..+.+.. |+.-|-=.|++. ++. -+.+.|+.- . .|+-. + -.-||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 556677889999999998766 888888889884 332 245666542 1 11111 1 123777777
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEecCCcccCCCCCCChhhh-
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA- 382 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~-lvD~~GLv~~~r~~l~~~k~- 382 (603)
.++-.+++..+.+|+. .|++|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~G---k~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~-Gld~~~l~ 285 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEG---KTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN-GFTKEKLA 285 (454)
T ss_pred HHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC-CCCHHHHH
Confidence 8888889988998888 9999999999999999998764 43 455 999999999865 4544332
Q ss_pred --------------ccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 007456 383 --------------PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 447 (603)
Q Consensus 383 --------------~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt 447 (603)
.|+.... + ....+-.+ +-.++.||||=+.+ .+..|++-++.+.+ +.-.+|.=-+| |+
T Consensus 286 ~l~~~k~~~~g~i~~~~~~~~---~-a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~--~~ak~V~EgAN~p~ 357 (454)
T PTZ00079 286 YLMDLKNVKRGRLKEYAKHSS---T-AKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK--NGCKLVAEGANMPT 357 (454)
T ss_pred HHHHHHhhcCCcHHhhhhccC---C-cEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH--cCCeEEEecCCCCC
Confidence 1211000 0 00001111 22367899997775 79999999998842 45668888888 77
Q ss_pred CccCCCHHHHhc
Q 007456 448 MNAECTAADAFK 459 (603)
Q Consensus 448 ~~aE~tpeda~~ 459 (603)
.. .+.+.++
T Consensus 358 t~---eA~~~L~ 366 (454)
T PTZ00079 358 TI---EATHLFK 366 (454)
T ss_pred CH---HHHHHHH
Confidence 53 3445554
No 34
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.56 E-value=0.75 Score=51.50 Aligned_cols=194 Identities=18% Similarity=0.146 Sum_probs=127.1
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCeEEEeecCCCchH--HHHHHHHhhcC----------Ccc----ccCCchhHHHHHH
Q 007456 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKRF----------CMF----NDDIQGTAGVALA 305 (603)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~Iq~EDf~~~na--f~iL~ryr~~~----------~~F----nDDiQGTaaV~lA 305 (603)
.+..|-..|...|+.++.+.+ |..-|-=+|++..-. --+.++|+.-. ++. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 556688889999999999988 777888889885322 22567776432 211 1223457766777
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ecCCcccCCCCCCChh----
Q 007456 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPA---- 380 (603)
Q Consensus 306 gll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lv-D~~GLv~~~r~~l~~~---- 380 (603)
++..+++..+.+|+. .||+|.|-|..|...|++|.. .|. +|+-+ |++|-|+... .|+..
T Consensus 218 ~~~~~~~~~~~~l~g---~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~-GLD~~~L~~ 281 (445)
T PRK09414 218 FAEEMLKARGDSFEG---KRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE-GIDLEKLKE 281 (445)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 888888888888888 999999999999999999954 343 45555 9999998865 34322
Q ss_pred -hhccccccCCcCCc--ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHH
Q 007456 381 -AAPFAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAAD 456 (603)
Q Consensus 381 -k~~fa~~~~~~~~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~tped 456 (603)
+...-..-..+... ....+..+ +..++.||||=+. ..+..|++-...+. .+.-.||.=-+| |+. -.+++
T Consensus 282 ~k~~~~~~l~~~~~~~~~~~i~~~~-i~~~d~DVliPaA-l~n~It~~~a~~i~--~~~akiIvEgAN~p~t---~~A~~ 354 (445)
T PRK09414 282 IKEVRRGRISEYAEEFGAEYLEGGS-PWSVPCDIALPCA-TQNELDEEDAKTLI--ANGVKAVAEGANMPST---PEAIE 354 (445)
T ss_pred HHHhcCCchhhhhhhcCCeecCCcc-ccccCCcEEEecC-CcCcCCHHHHHHHH--HcCCeEEEcCCCCCCC---HHHHH
Confidence 21100000000000 00112222 3356789999766 48999999999983 245679998998 773 22455
Q ss_pred Hhc
Q 007456 457 AFK 459 (603)
Q Consensus 457 a~~ 459 (603)
++.
T Consensus 355 ~L~ 357 (445)
T PRK09414 355 VFL 357 (445)
T ss_pred HHH
Confidence 554
No 35
>PLN00203 glutamyl-tRNA reductase
Probab=94.50 E-value=0.16 Score=57.59 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhCC-CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 300 AGVALAGLLGTVRAQGL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 300 aaV~lAgll~A~r~tg~-~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
-+|+-+++=-|.++.|. +|.+ .+|+|+|||..|..++..+.. .|. ++|+++++.. . ...
T Consensus 245 vSv~s~Av~la~~~~~~~~l~~---kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs~----e--ra~ 304 (519)
T PLN00203 245 VSVSSAAVELALMKLPESSHAS---ARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRSE----E--RVA 304 (519)
T ss_pred cCHHHHHHHHHHHhcCCCCCCC---CEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCCH----H--HHH
Confidence 34444445445555553 4666 999999999999888876653 353 4799888751 1 112
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCC-CCCCCHHHHHHhhhc--CCCCC-eEEecCCCCC
Q 007456 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRES--DSVKP-AIFAMSNPTM 448 (603)
Q Consensus 379 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-~g~Ft~evv~~M~~~--~~erP-IIF~LSNPt~ 448 (603)
.....|-.....+ ....++.+++.. .|++|.+++. ...|++++++.|.+. ...+| +|+=||.|-.
T Consensus 305 ~La~~~~g~~i~~---~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 305 ALREEFPDVEIIY---KPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred HHHHHhCCCceEe---ecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 2222221000000 012457788876 7999987654 368999999998320 11244 5667999975
No 36
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.28 E-value=0.1 Score=56.25 Aligned_cols=125 Identities=13% Similarity=0.106 Sum_probs=70.7
Q ss_pred chHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChh
Q 007456 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (603)
Q Consensus 276 ~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~ 355 (603)
..|+..=.|-|.+.- =|.++|.++.+ |.++..+ +.+|.+.+++++|||..|--+|+.|.+ .|.
T Consensus 136 ~~A~~~aKrVRteT~------I~~~~vSv~s~--av~~~~~-~~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~--- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG------APYAEVTIESV--VQQELRR-RQKSKKASLLFIGYSEINRKVAYYLQR-----QGY--- 198 (338)
T ss_pred HHHHHHHHHHhhhcC------CCCCCcCHHHH--HHHHHHH-hCCccCCEEEEEcccHHHHHHHHHHHH-----cCC---
Confidence 455555556665421 14455555543 2222211 233455999999999988777666655 354
Q ss_pred hhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhc-ccCCcEEEeec----CCCCCCCHHHHHHh
Q 007456 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVR-KVKPHVLLGLS----GVGGVFNEEVLKAM 430 (603)
Q Consensus 356 eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~-~vkptvLIG~S----~~~g~Ft~evv~~M 430 (603)
++|+++.+.-- ..+|.... .+++. ..+.||+|-+| ++....+.+.++..
T Consensus 199 ---~~i~v~nRt~~-----------~~~~~~~~------------~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~ 252 (338)
T PRK00676 199 ---SRITFCSRQQL-----------TLPYRTVV------------REELSFQDPYDVIFFGSSESAYAFPHLSWESLADI 252 (338)
T ss_pred ---CEEEEEcCCcc-----------ccchhhhh------------hhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc
Confidence 47998888641 12232110 01111 13579999753 33355677766543
Q ss_pred hhcCCCCCeEEecCCCCC
Q 007456 431 RESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 431 ~~~~~erPIIF~LSNPt~ 448 (603)
.+| ++|=||+|-.
T Consensus 253 ----~~r-~~iDLAvPRd 265 (338)
T PRK00676 253 ----PDR-IVFDFNVPRT 265 (338)
T ss_pred ----cCc-EEEEecCCCC
Confidence 224 9999999987
No 37
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.27 E-value=1.7 Score=48.65 Aligned_cols=187 Identities=16% Similarity=0.145 Sum_probs=123.0
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCeEEEeecCCCch--HHHHHHHHhhcC----Ccc----------ccCCchhHHHHHH
Q 007456 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKRF----CMF----------NDDIQGTAGVALA 305 (603)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~Iq~EDf~~~n--af~iL~ryr~~~----~~F----------nDDiQGTaaV~lA 305 (603)
.+-.|...|.-.||..+.... |+.-|-=+|++..- ---+.+.|+..- -+| .+--.-||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 566778899999999999876 88888888987632 233677776532 222 2333457777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccc
Q 007456 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (603)
Q Consensus 306 gll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa 385 (603)
++-.+++..|.+|+. +||+|-|.|..|...|+.|.++ |. +=+.+-|++|-|++.. .|+..+..|.
T Consensus 214 ~~~~~~~~~g~~l~g---~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~-Gld~~~l~~~ 278 (444)
T PRK14031 214 FLMEMLKTKGTDLKG---KVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD-GIDREKLDYI 278 (444)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-CCCHHHHHHH
Confidence 888888888988888 9999999999999999998775 43 2355699999888653 4655443321
Q ss_pred ccc-----CCcCCc-----ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 007456 386 KDP-----GDFMGL-----REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (603)
Q Consensus 386 ~~~-----~~~~~~-----~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~ 448 (603)
+.. ..+... ....+-.+. -.++.||||=+.. .+..|++-++.+.+..+ -+|.--+| |+.
T Consensus 279 ~~~k~~~~~~v~~~~~~~ga~~i~~d~~-~~~~cDIliPaAl-~n~I~~~na~~l~a~g~--~~V~EgAN~P~t 348 (444)
T PRK14031 279 MELKNLYRGRIREYAEKYGCKYVEGARP-WGEKGDIALPSAT-QNELNGDDARQLVANGV--IAVSEGANMPST 348 (444)
T ss_pred HHHHhhcCCchhhhHhhcCCEEcCCccc-ccCCCcEEeeccc-ccccCHHHHHHHHhcCC--eEEECCCCCCCC
Confidence 100 000000 000111222 1256899996654 79999999999953122 37777787 543
No 38
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.12 E-value=0.054 Score=59.69 Aligned_cols=98 Identities=14% Similarity=0.278 Sum_probs=60.9
Q ss_pred CCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCC
Q 007456 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
+|.+.|++|+|||.+|-.+|..|.. .|. ++|+++.+. ..+ -+.++..-.... .....+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~r------a~~La~~~~~~~-~~~~~~ 235 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEK------AQKITSAFRNAS-AHYLSE 235 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHH------HHHHHHHhcCCe-EecHHH
Confidence 3445999999999999888777754 354 479988874 111 122222110000 001245
Q ss_pred HHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCe-EEecCCCCC
Q 007456 400 LLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPA-IFAMSNPTM 448 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~erPI-IF~LSNPt~ 448 (603)
|.+++.. .|++|-+++.| -++|.+.++ .+|. |+=|+.|-.
T Consensus 236 l~~~l~~--aDiVI~aT~a~~~vi~~~~~~-------~~~~~~iDLavPRd 277 (414)
T PRK13940 236 LPQLIKK--ADIIIAAVNVLEYIVTCKYVG-------DKPRVFIDISIPQA 277 (414)
T ss_pred HHHHhcc--CCEEEECcCCCCeeECHHHhC-------CCCeEEEEeCCCCC
Confidence 6777776 79999888765 567865532 3565 467999976
No 39
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.11 E-value=0.28 Score=49.88 Aligned_cols=129 Identities=19% Similarity=0.310 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-||-=+..++-.+++..+.+|+. .||+|.|-|..|.++|++|.+. |. +=+.+.|++|-+++.. .|
T Consensus 9 ~Tg~Gv~~~~~~~~~~~~~~l~~---~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~-Gl 73 (227)
T cd01076 9 ATGRGVAYATREALKKLGIGLAG---ARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD-GL 73 (227)
T ss_pred cchHHHHHHHHHHHHhcCCCccC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-CC
Confidence 45666667777788887776777 9999999999999999988663 43 2355999999998765 23
Q ss_pred Chhhh-ccccccCCcCCcc--cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 007456 378 DPAAA-PFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (603)
Q Consensus 378 ~~~k~-~fa~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~ 448 (603)
+.... .+.+........+ ...+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |++
T Consensus 74 d~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l-----~a~~I~egAN~~~t 141 (227)
T cd01076 74 DVPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI-----KAKIIVEAANGPTT 141 (227)
T ss_pred CHHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc-----eeeEEEeCCCCCCC
Confidence 32221 1111100000000 0112233 3345889999777 5899999999998 3679999998 553
No 40
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.09 E-value=0.43 Score=49.69 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~-lvD~~GLv~~~r~~l 377 (603)
||-=+.-++-.+++..+.+|+. .||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|++.. .|
T Consensus 17 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~-Gl 80 (254)
T cd05313 17 TGYGLVYFVEEMLKDRNETLKG---KRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD-GF 80 (254)
T ss_pred hHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC-CC
Confidence 5555666777788888888888 9999999999999999998763 43 455 999999998865 34
Q ss_pred Chhhhc--c---cccc---CCcCC-c--ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-
Q 007456 378 DPAAAP--F---AKDP---GDFMG-L--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN- 445 (603)
Q Consensus 378 ~~~k~~--f---a~~~---~~~~~-~--~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN- 445 (603)
+..+.. + .+.. ..... . ....+-.|.. ..+.||||=+. ..+..|++-+..+. .+.-.||.--+|
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcA-l~~~I~~~na~~i~--~~~ak~I~EgAN~ 156 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCA-TQNEVDAEDAKLLV--KNGCKYVAEGANM 156 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEecc-ccccCCHHHHHHHH--HcCCEEEEeCCCC
Confidence 322110 0 0000 00000 0 0111222322 45789999765 57999999999994 356789999999
Q ss_pred CCCccCCCHHHHhc
Q 007456 446 PTMNAECTAADAFK 459 (603)
Q Consensus 446 Pt~~aE~tpeda~~ 459 (603)
|+.. .+++.+.
T Consensus 157 p~t~---~a~~~L~ 167 (254)
T cd05313 157 PCTA---EAIEVFR 167 (254)
T ss_pred CCCH---HHHHHHH
Confidence 8763 3445544
No 41
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.04 E-value=0.69 Score=47.88 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=97.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCccc-CCCCCCChhhhccccccC----C-----cCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT-KERKNLDPAAAPFAKDPG----D-----FMG 393 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~-~~r~~l~~~k~~fa~~~~----~-----~~~ 393 (603)
.+|.|+|+|..|.+||..+... |. +++++|.+---. +....+......+..... + ...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999999999999887553 43 688998641100 000001111111110000 0 000
Q ss_pred cccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCC
Q 007456 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPF 473 (603)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf 473 (603)
.....++.++++. .|++|=+-...-.+.+++++...+ ......|+ .||.+++ .+.++.+...-..=|....||
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~vg~Hf~ 144 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAK-VAPEKTIF-ATNSSTL---LPSQFAEATGRPEKFLALHFA 144 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHh-hCCCCCEE-EECcccC---CHHHHHhhcCCcccEEEEcCC
Confidence 1123578899887 688875432222366777777743 44444455 3565553 555554433211113335788
Q ss_pred CceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCc-cc-cCCCCcchhhHHHH
Q 007456 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI-LY-PSIDSIRDITAEVG 551 (603)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~-l~-P~l~~ir~Vs~~VA 551 (603)
.|+.. .+. +-| +....-+++.+ +.+..+...+- +.. ++ |..-. -|..++-
T Consensus 145 ~p~~~--~~l--------vev----------v~~~~t~~~~~-~~~~~~~~~~G-----k~pv~v~~d~pg--fi~nRi~ 196 (287)
T PRK08293 145 NEIWK--NNT--------AEI----------MGHPGTDPEVF-DTVVAFAKAIG-----MVPIVLKKEQPG--YILNSLL 196 (287)
T ss_pred CCCCc--CCe--------EEE----------eCCCCCCHHHH-HHHHHHHHHcC-----CeEEEecCCCCC--HhHHHHH
Confidence 88754 221 111 22233355544 44555554432 222 22 23322 4666666
Q ss_pred HHHHHHH---HHcCccC
Q 007456 552 AAVLRAA---VEEDLAE 565 (603)
Q Consensus 552 ~AVa~~A---~~~G~A~ 565 (603)
.++...| +++|+|+
T Consensus 197 ~~~~~ea~~l~~~g~a~ 213 (287)
T PRK08293 197 VPFLSAALALWAKGVAD 213 (287)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 6666655 4589875
No 42
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.90 E-value=0.16 Score=56.26 Aligned_cols=216 Identities=22% Similarity=0.268 Sum_probs=118.8
Q ss_pred chHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChh
Q 007456 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (603)
Q Consensus 276 ~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~ 355 (603)
..|+..=.|.|.+--. -.|--+|.-|++=-|-++.|. |++ .+++|+|||..|..+|..|... |.
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~---~~vlvIGAGem~~lva~~L~~~-----g~--- 202 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKD---KKVLVIGAGEMGELVAKHLAEK-----GV--- 202 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-ccc---CeEEEEcccHHHHHHHHHHHhC-----CC---
Confidence 5667777777765200 122333344444444444443 445 9999999999998888887764 44
Q ss_pred hhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecC-CCCCCCHHHHHHhhhcC
Q 007456 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG-VGGVFNEEVLKAMRESD 434 (603)
Q Consensus 356 eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~-~~g~Ft~evv~~M~~~~ 434 (603)
++|+++.+. . .. -+.+|+.-.- . .-....|.+.+.. .||+|-.++ +.-.++.+.++.-.+
T Consensus 203 ---~~i~IaNRT----~-----er-A~~La~~~~~-~-~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~-- 263 (414)
T COG0373 203 ---KKITIANRT----L-----ER-AEELAKKLGA-E-AVALEELLEALAE--ADVVISSTSAPHPIITREMVERALK-- 263 (414)
T ss_pred ---CEEEEEcCC----H-----HH-HHHHHHHhCC-e-eecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHh--
Confidence 579888773 1 11 1223332110 0 0012346667766 699886655 447899988887532
Q ss_pred CCCC-eEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceecCCCeeeccccccccccchhhHHHHHHhCCcccCHH
Q 007456 435 SVKP-AIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDG 513 (603)
Q Consensus 435 ~erP-IIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~ 513 (603)
..+. +||=|+||-. +++. .+.-+|+++|-==-|-.+.-.-..-..+
T Consensus 264 ~r~~~livDiavPRd---------ie~~------------------------v~~l~~v~l~~iDDL~~iv~~n~~~R~~ 310 (414)
T COG0373 264 IRKRLLIVDIAVPRD---------VEPE------------------------VGELPNVFLYTIDDLEEIVEENLEARKE 310 (414)
T ss_pred cccCeEEEEecCCCC---------CCcc------------------------ccCcCCeEEEehhhHHHHHHHhHHHHHH
Confidence 3333 9999999987 2221 1123344444322222222221111122
Q ss_pred HHHHHHHH-----HhccCCCCCCCCCccccCCCCcchhhHHHHHHHHHHHHHcC
Q 007456 514 MLQQAAEC-----LASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEED 562 (603)
Q Consensus 514 m~~aAA~a-----LA~~v~~~~l~~g~l~P~l~~ir~Vs~~VA~AVa~~A~~~G 562 (603)
.. .+|++ ++.+.. .+..-.+-|.+.++|+-+..|...-.+.|.+.-
T Consensus 311 ~~-~~ae~iIeee~~~~~~--~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l 361 (414)
T COG0373 311 EA-AKAEAIIEEELAEFME--WLKKLEVVPTIRALREQAEDVREEELEKALKKL 361 (414)
T ss_pred HH-HHHHHHHHHHHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 12222 222221 244557889999999888888888888887543
No 43
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.80 E-value=0.09 Score=58.19 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=75.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhc-CCChhhhcCeEEEEecCCcccCCCC-CCChhhhccccc-cCCcCCcccCCCH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMA-GNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASL 400 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~-Gls~~eA~~~i~lvD~~GLv~~~r~-~l~~~k~~fa~~-~~~~~~~~~~~~L 400 (603)
.||+|+||||+ -.-.|+..+.+.. .++ -+.|||+|-+ .+|- .+...-+.+++. ..++. .....++
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~-v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIK-FEKTMDL 68 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCH
Confidence 38999999995 4444444444222 343 3789999965 2231 112211222222 11211 1234689
Q ss_pred HHHhcccCCcEEE---------------------ee-----cCCCCCCC--------HHHHHHhhhcCCCCCeEEecCCC
Q 007456 401 LEVVRKVKPHVLL---------------------GL-----SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSNP 446 (603)
Q Consensus 401 ~e~V~~vkptvLI---------------------G~-----S~~~g~Ft--------~evv~~M~~~~~erPIIF~LSNP 446 (603)
.||++. +|..| |+ .|.+|.|. .++++.|. ++++..+|+-.|||
T Consensus 69 ~~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~-~~~P~a~lin~TNP 145 (425)
T cd05197 69 EDAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXE-KLSPDAWYLNFTNP 145 (425)
T ss_pred HHHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHH-HhCCCcEEEecCCh
Confidence 999988 67776 11 22234433 38888885 59999999999999
Q ss_pred CCccCCCHHHHhcccCCcEEEEcC
Q 007456 447 TMNAECTAADAFKHAGENIVFASG 470 (603)
Q Consensus 447 t~~aE~tpeda~~wt~Grai~AtG 470 (603)
.. +.-+-+++++...-+|.+|
T Consensus 146 ~d---i~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 146 AG---EVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred HH---HHHHHHHHhCCCCcEEEEC
Confidence 96 4455556666333445544
No 44
>PLN00106 malate dehydrogenase
Probab=93.65 E-value=0.42 Score=51.24 Aligned_cols=120 Identities=20% Similarity=0.254 Sum_probs=77.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhh
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAA 382 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~ 382 (603)
|.-|.|||..|..- . .||+|+|| |..|..+|..|.. .|+- ..+.|+|.+- .++. -+|.+...
T Consensus 4 ~~~~~~~~~~~~~~-~---~KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~el~L~Di~~--~~g~a~Dl~~~~~ 67 (323)
T PLN00106 4 ASSLRACRAKGGAP-G---FKVAVLGAAGGIGQPLSLLMKM-----NPLV-----SELHLYDIAN--TPGVAADVSHINT 67 (323)
T ss_pred hhhhhccccccCCC-C---CEEEEECCCCHHHHHHHHHHHh-----CCCC-----CEEEEEecCC--CCeeEchhhhCCc
Confidence 45577888888743 3 69999999 9999999887754 2432 4799999865 1111 13433221
Q ss_pred ccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 383 ~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
+ .+-. . .....++.+++++ .|+.|=+.+.+ |. ..+++++.+. +++.+.||+.-|||..
T Consensus 68 ~-~~i~-~---~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~-~~~p~aivivvSNPvD 139 (323)
T PLN00106 68 P-AQVR-G---FLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVA-KHCPNALVNIISNPVN 139 (323)
T ss_pred C-ceEE-E---EeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEeCCCcc
Confidence 1 1100 0 0023468889988 68887565543 31 3456777775 4889999999999995
No 45
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.65 E-value=0.31 Score=48.35 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHh--CCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 299 TAGVALAGLLGTVRAQ--GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 299 TaaV~lAgll~A~r~t--g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
||-=+..++-.+++.. +.+++. .+|+|.|.|..|..+|+.|.+. |. ++++.|++. +.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~g---k~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~------~~ 63 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEG---KTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE------EA 63 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH------HH
Confidence 4444555666666764 777777 9999999999999999988764 43 688888651 12
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAA 455 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~tpe 455 (603)
+..++..|. .. ..+..+... .+.|+++=++. .+..|++.++.| .-++|..-+| |+. +..++
T Consensus 64 ~~~~~~~~g---~~------~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l-----~~~~v~~~AN~~~~--~~~~~ 125 (200)
T cd01075 64 VARAAELFG---AT------VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL-----KAKAIAGAANNQLA--DPRHG 125 (200)
T ss_pred HHHHHHHcC---CE------EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc-----CCCEEEECCcCccC--CHhHH
Confidence 233332221 00 112233333 36899995554 789999999999 2568888888 665 23445
Q ss_pred HHhc
Q 007456 456 DAFK 459 (603)
Q Consensus 456 da~~ 459 (603)
+.++
T Consensus 126 ~~L~ 129 (200)
T cd01075 126 QMLH 129 (200)
T ss_pred HHHH
Confidence 5554
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.53 E-value=0.24 Score=53.71 Aligned_cols=98 Identities=17% Similarity=0.304 Sum_probs=62.0
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCH
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L 400 (603)
+...+++|+|+|.+|.++++.+... |. ++.++|++- . .+......|...... ...+...|
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~~----~--~~~~l~~~~g~~v~~--~~~~~~~l 224 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDINI----D--RLRQLDAEFGGRIHT--RYSNAYEI 224 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECCH----H--HHHHHHHhcCceeEe--ccCCHHHH
Confidence 3348999999999999999888653 42 588888741 1 111111222111000 00012358
Q ss_pred HHHhcccCCcEEEeecCC-----CCCCCHHHHHHhhhcCCCCCeEEecC
Q 007456 401 LEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFAMS 444 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~-----~g~Ft~evv~~M~~~~~erPIIF~LS 444 (603)
.++++. .|++|.+... +..+|++.++.|. ++.+|+-+|
T Consensus 225 ~~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk----~g~vIvDva 267 (370)
T TIGR00518 225 EDAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK----PGAVIVDVA 267 (370)
T ss_pred HHHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC----CCCEEEEEe
Confidence 888876 7999987532 4568999999993 567888777
No 47
>PRK14030 glutamate dehydrogenase; Provisional
Probab=93.49 E-value=2.6 Score=47.27 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=126.4
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCeEEEeecCCCchH--HHHHHHHhhcC----Ccccc---CC-------chhHHHHHH
Q 007456 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKRF----CMFND---DI-------QGTAGVALA 305 (603)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~Iq~EDf~~~na--f~iL~ryr~~~----~~FnD---Di-------QGTaaV~lA 305 (603)
.+..|...|.-.||+.+.+.. |+.-|-=.|++..-. --+++.|+.-. .++.- +. .-||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 456688889999999999644 877777788884321 12567776521 22111 11 237777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhc--
Q 007456 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP-- 383 (603)
Q Consensus 306 gll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~-- 383 (603)
++-.+++..|.+|+. .||+|-|.|..|...|+.|.++ |. +=+-+-|++|-|++.. .|+..+..
T Consensus 214 ~~~~~~~~~g~~l~g---~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~-Gld~~~l~~l 278 (445)
T PRK14030 214 FVHQMLETKGIDIKG---KTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD-GISGEKIDYM 278 (445)
T ss_pred HHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC-CCCHHHHHHH
Confidence 888888988988888 9999999999999999998664 44 3477789999998754 34443311
Q ss_pred --cccccC--------CcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCC
Q 007456 384 --FAKDPG--------DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAEC 452 (603)
Q Consensus 384 --fa~~~~--------~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~ 452 (603)
+..... .+++ ....+-.+ +-.++.||||=+.. .+..|++-++.+. .+.-.||.=-+| |+. -
T Consensus 279 ~~~k~~~~~~~~~~~~~~~g-a~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~--~~~ak~V~EgAN~p~t---~ 350 (445)
T PRK14030 279 LELRASGNDIVAPYAEKFPG-STFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLI--KNGVLCVAEVSNMGCT---A 350 (445)
T ss_pred HHHHHhcCccHHHHHhcCCC-CEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHH--HcCCeEEEeCCCCCCC---H
Confidence 100000 0000 00011122 22467899997664 7999999999994 255779999999 544 2
Q ss_pred CHHHHhc
Q 007456 453 TAADAFK 459 (603)
Q Consensus 453 tpeda~~ 459 (603)
.+++++.
T Consensus 351 eA~~iL~ 357 (445)
T PRK14030 351 EAIDKFI 357 (445)
T ss_pred HHHHHHH
Confidence 2445554
No 48
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.38 E-value=0.095 Score=52.19 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=64.8
Q ss_pred CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCccc
Q 007456 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (603)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~ 396 (603)
+|++ .||+|+|+|..|.+||..|+.+ |. +++.++|.+=+ .. .+|..+ . |... +. +...
T Consensus 18 ~L~~---~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~--sNL~Rq-~-~~~~--~i-G~~K 75 (200)
T TIGR02354 18 KLEQ---ATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP--SNLNRQ-Q-YKAS--QV-GEPK 75 (200)
T ss_pred HHhC---CcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc--cccccc-c-CChh--hC-CCHH
Confidence 3555 9999999999999999999775 54 57999999832 22 245442 1 2111 11 1011
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCCccCC
Q 007456 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTMNAEC 452 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF-~LSNPt~~aE~ 452 (603)
...+.+.++...|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+.
T Consensus 76 a~~~~~~l~~inp~~~i~~--~~~~i~~~~~~~~~~---~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 76 TEALKENISEINPYTEIEA--YDEKITEENIDKFFK---DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHHHHHHCCCCEEEE--eeeeCCHhHHHHHhc---CCCEEEECCCCHHHHHHH
Confidence 2346677777778764432 334567666665422 334555 55666665443
No 49
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.19 E-value=0.52 Score=49.34 Aligned_cols=38 Identities=5% Similarity=-0.238 Sum_probs=30.7
Q ss_pred eccccccccccchhhHHHHHHhCCcccCHHHHHHHHHH
Q 007456 484 GHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEC 521 (603)
Q Consensus 484 ~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~a 521 (603)
..||+..|-+.++.+.=++.++..--++.+-+..+...
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35788888889999999988888888888877776654
No 50
>PRK08328 hypothetical protein; Provisional
Probab=92.92 E-value=0.049 Score=55.23 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=74.9
Q ss_pred HHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007456 281 TLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (603)
Q Consensus 281 iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~ 360 (603)
-++||..++..|..+.| .+|++ .||+++|+|..|..+|..|+.+ |+ ++
T Consensus 6 ~~~ry~Rq~~~~g~~~q------------------~~L~~---~~VlIiG~GGlGs~ia~~La~~-----Gv------g~ 53 (231)
T PRK08328 6 ELERYDRQIMIFGVEGQ------------------EKLKK---AKVAVVGVGGLGSPVAYYLAAA-----GV------GR 53 (231)
T ss_pred HHHHHhhHHHhcCHHHH------------------HHHhC---CcEEEECCCHHHHHHHHHHHHc-----CC------CE
Confidence 35788887766765332 34556 9999999999999999999776 44 68
Q ss_pred EEEEecCCcccCCCCCCChhhhccccccCCcCCc-ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCe
Q 007456 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL-REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPA 439 (603)
Q Consensus 361 i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~-~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPI 439 (603)
|.++|.+= +. -.+|..+ .+... .+. +. .......+.++...|++.|=.. .+-++++-+...- .+.-+
T Consensus 54 i~lvD~D~-ve--~sNL~Rq--~l~~~-~dv-G~~~k~~~a~~~l~~~np~v~v~~~--~~~~~~~~~~~~l---~~~D~ 121 (231)
T PRK08328 54 ILLIDEQT-PE--LSNLNRQ--ILHWE-EDL-GKNPKPLSAKWKLERFNSDIKIETF--VGRLSEENIDEVL---KGVDV 121 (231)
T ss_pred EEEEcCCc-cC--hhhhccc--cccCh-hhc-CchHHHHHHHHHHHHhCCCCEEEEE--eccCCHHHHHHHH---hcCCE
Confidence 99999872 11 1234431 12111 111 00 0011234556777899887654 3556776655542 24567
Q ss_pred EE-ecCCCCCc
Q 007456 440 IF-AMSNPTMN 449 (603)
Q Consensus 440 IF-~LSNPt~~ 449 (603)
|| +.-|+..+
T Consensus 122 Vid~~d~~~~r 132 (231)
T PRK08328 122 IVDCLDNFETR 132 (231)
T ss_pred EEECCCCHHHH
Confidence 77 45576553
No 51
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.58 E-value=0.34 Score=51.22 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=86.7
Q ss_pred HHHHHHHHHhC--CC---eEEEeecCCCchHHHHHHHHh--hcCCccccCCc--------hhHHHHHHHHHHHHHHhCCC
Q 007456 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDIQ--------GTAGVALAGLLGTVRAQGLS 317 (603)
Q Consensus 253 defv~av~~~~--P~---~~Iq~EDf~~~naf~iL~ryr--~~~~~FnDDiQ--------GTaaV~lAgll~A~r~tg~~ 317 (603)
+||.+.++++- |+ .++|+==-+.-+..++++... +.+=.||..-. +-.-+|-+|++.=++-.+.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~ 154 (285)
T PRK14191 75 AELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYHIE 154 (285)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhCCC
Confidence 56777777764 43 366654222333334433322 12222222212 23457788888888999998
Q ss_pred CCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCccc
Q 007456 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (603)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~ 396 (603)
++. .++|++|.| ..|.-+|.++... |. .+.+++++
T Consensus 155 l~G---k~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~----------------------------- 190 (285)
T PRK14191 155 IKG---KDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL----------------------------- 190 (285)
T ss_pred CCC---CEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC-----------------------------
Confidence 888 999999999 9999999998653 32 46666432
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.+.+++ .|++|.+.+.++.+++++|+
T Consensus 191 t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1247788888 79999999999999999885
No 52
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=92.46 E-value=0.17 Score=55.91 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=74.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHH-hcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccc-cCCcCCcccCCCH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAAR-MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASL 400 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~-~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~-~~~~~~~~~~~~L 400 (603)
.||+|+||||+ -.-. ++..+.+ ...++ .+.|||+|-+- ..| .-+...-+.+.+. ..++. .....++
T Consensus 1 ~KI~iIGaGS~--~tp~-li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~-v~~t~d~ 69 (419)
T cd05296 1 MKLTIIGGGSS--YTPE-LIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIK-VHLTTDR 69 (419)
T ss_pred CEEEEECCchH--hHHH-HHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCH
Confidence 48999999996 3334 4444442 23333 26899999862 112 0111111112111 11211 1134679
Q ss_pred HHHhcccCCcEEEeecCCCCC----------------------------------CCHHHHHHhhhcCCCCCeEEecCCC
Q 007456 401 LEVVRKVKPHVLLGLSGVGGV----------------------------------FNEEVLKAMRESDSVKPAIFAMSNP 446 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~M~~~~~erPIIF~LSNP 446 (603)
.||++. +|..|-.-.++|. .=.++++.|. ++|+.-+|+=.|||
T Consensus 70 ~~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~-~~~Pda~lin~TNP 146 (419)
T cd05296 70 REALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVE-ELAPDAWLINFTNP 146 (419)
T ss_pred HHHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHH-HHCCCeEEEEecCH
Confidence 999988 5777633333321 1237788885 49999999999999
Q ss_pred CCccCCCHHHHhcccCCcEEEEcC
Q 007456 447 TMNAECTAADAFKHAGENIVFASG 470 (603)
Q Consensus 447 t~~aE~tpeda~~wt~Grai~AtG 470 (603)
.. +..+-+.+++.-| +|.+|
T Consensus 147 ~~---ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 147 AG---IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred HH---HHHHHHHHhccCC-EEeeC
Confidence 97 5666667777544 44544
No 53
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.20 E-value=0.22 Score=52.12 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.|++.+++..+..++. ++++|+|||.||..++..|... |. ++|+++|+.
T Consensus 112 ~G~~~~l~~~~~~~~~---k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~ 160 (284)
T PRK12549 112 SGFAESFRRGLPDASL---ERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD 160 (284)
T ss_pred HHHHHHHHhhccCccC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 3477788755455566 9999999999999998888653 54 579999985
No 54
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.15 E-value=0.35 Score=46.97 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
|++.+++.+..+++..|..+++ .+++++|+ |..|..++..+... | .++++++++. . .+
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~---~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~~----~--~~ 65 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKG---KTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRDL----E--RA 65 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCC---CEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH----H--HH
Confidence 6777778888888777888888 99999997 98888888777542 3 3688887651 1 11
Q ss_pred Chhhhccccc-cCCc--CCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 378 DPAAAPFAKD-PGDF--MGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 378 ~~~k~~fa~~-~~~~--~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
......+... .... ....+..++.++++. .|++|-++. .|.++......- .....+++=++.|-+
T Consensus 66 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~-~g~~~~~~~~~~---~~~~~vv~D~~~~~~ 133 (194)
T cd01078 66 QKAADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGA-AGVELLEKLAWA---PKPLAVAADVNAVPP 133 (194)
T ss_pred HHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCC-CCceechhhhcc---cCceeEEEEccCCCC
Confidence 1111111100 0000 000112345677765 689997665 455433222211 111236776676665
No 55
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.06 E-value=1.2 Score=42.41 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-hHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCCh
Q 007456 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (603)
Q Consensus 301 aV~lAgll~A~r~tg~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~ 379 (603)
-++..|++.-++..|.+++. ++|+++|.+. .|.-+|.+| . ++|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~g---k~v~VvGrs~~vG~pla~lL----~-~~ga-------tV~~~~~~t----------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDG---KKVLVVGRSGIVGAPLQCLL----Q-RDGA-------TVYSCDWKT----------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCC---CEEEEECCCchHHHHHHHHH----H-HCCC-------EEEEeCCCC-----------
Confidence 35778889999999998888 9999999864 444444444 3 3443 467777631
Q ss_pred hhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 380 ~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
.+|.|.+++ .|++|-..+.++.|+.|+||.
T Consensus 63 ------------------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 63 ------------------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred ------------------cCHHHHHhh--CCEEEEecCCCCccCHHHcCC
Confidence 247888888 799999999999999999884
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.83 E-value=6.2 Score=40.92 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=26.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988654 43 58889874
No 57
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.67 E-value=1.1 Score=51.07 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCcEEEeecCCCC-----CCCHHHHHHhhhcCCCCCeEEecCCCC-CccCCCH
Q 007456 408 KPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTA 454 (603)
Q Consensus 408 kptvLIG~S~~~g-----~Ft~evv~~M~~~~~erPIIF~LSNPt-~~aE~tp 454 (603)
+.|++|.+++.+| +++++.++.|. +.-+|.=++-+. ..+|++.
T Consensus 248 gaDVVIetag~pg~~aP~lit~~~v~~mk----pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 248 EVDIIITTALIPGKPAPKLITAEMVASMK----PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred CCCEEEECCCCCcccCcchHHHHHHHhcC----CCCEEEEEccCCCCCccccc
Confidence 3899999999876 67999999993 455666677653 3345553
No 58
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.49 E-value=0.51 Score=50.29 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=75.4
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~ 401 (603)
..||.|+|||+.|.++|.+++. .|+. .++|+|.+-=..... -++.+.. .+......+ ....++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~~-~~~~~~~~I---~~~~d~- 69 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHSN-VIAGSNSKV---IGTNNY- 69 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhhh-hccCCCeEE---EECCCH-
Confidence 3799999999999999887643 4652 399999753222211 1222211 111111011 112456
Q ss_pred HHhcccCCcEEEeecCCCC---C----------------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC
Q 007456 402 EVVRKVKPHVLLGLSGVGG---V----------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG 462 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~g---~----------------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~ 462 (603)
|++++ .|++|=+.+.++ - .-.++++.|.+ ++..-+++--|||.. .....+.+.+.
T Consensus 70 ~~l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~-~~p~a~~iv~sNP~d---i~t~~~~~~sg 143 (321)
T PTZ00082 70 EDIAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKK-YCPNAFVIVITNPLD---VMVKLLQEHSG 143 (321)
T ss_pred HHhCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHhcC
Confidence 56777 799885444432 1 12467777754 777779999999996 44455555552
Q ss_pred --CcEEEEcCCCC
Q 007456 463 --ENIVFASGSPF 473 (603)
Q Consensus 463 --Grai~AtGSPf 473 (603)
-+-+|.+|+-.
T Consensus 144 ~p~~rviGlgt~l 156 (321)
T PTZ00082 144 LPKNKVCGMAGVL 156 (321)
T ss_pred CChhhEEEecCcc
Confidence 24567777433
No 59
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.48 E-value=0.52 Score=49.12 Aligned_cols=126 Identities=18% Similarity=0.247 Sum_probs=73.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCC--cCC-cccCCCH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMG-LREGASL 400 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~--~~~-~~~~~~L 400 (603)
.||.|+|||..|.++|..+... |+ . .++++|.+ .++ +......+.+.... ... .....+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~-----~-ev~L~D~~----~~~--~~~~~~dl~~~~~~~~~~~~i~~~~d~ 65 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL-----G-DVVLFDIV----EGV--PQGKALDIAEAAPVEGFDTKITGTNDY 65 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----e-EEEEEECC----Cch--hHHHHHHHHhhhhhcCCCcEEEeCCCH
Confidence 5899999999999999877542 33 1 69999983 111 11111111111000 000 0112455
Q ss_pred HHHhcccCCcEEEeecCCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCC---
Q 007456 401 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--- 463 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~G--- 463 (603)
++++. .|++|=+-+.| | ..-+++++.|.+ ++...+++-.|||.. ....-+++.+ |
T Consensus 66 -~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~-~~~~~~viv~tNP~d---~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 66 -EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKK-YAPDAIVIVVTNPVD---AMTYVALKES-GFPK 137 (307)
T ss_pred -HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCc
Confidence 45666 68887332222 2 123566677754 788888888899996 5555566665 4
Q ss_pred cEEEEcCCCCC
Q 007456 464 NIVFASGSPFE 474 (603)
Q Consensus 464 rai~AtGSPf~ 474 (603)
+-+|++|+-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 56889885544
No 60
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.01 E-value=0.71 Score=49.06 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=76.8
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~ 401 (603)
..||.|+|||+.|.++|.+++. .|+. .+.|+|.+--..++. -++.+.. .+....... ....+++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~-----~~~~------~l~L~Di~~~~~~g~~lDl~~~~-~~~~~~~~i---~~~~d~~ 69 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ-----KNLG------DVVLYDVIKGVPQGKALDLKHFS-TLVGSNINI---LGTNNYE 69 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-----CCCC------eEEEEECCCccchhHHHHHhhhc-cccCCCeEE---EeCCCHH
Confidence 3799999999999998887654 3542 499999752111111 1222221 111110000 1124566
Q ss_pred HHhcccCCcEEEeecCCCC--------------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcE
Q 007456 402 EVVRKVKPHVLLGLSGVGG--------------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~g--------------~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~--Gra 465 (603)
++++ .|++|=+.+.+. -+-+++.+.|.+ +++.-+++=.|||.. .....+.++++ =.-
T Consensus 70 -~l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~-~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~r 142 (319)
T PTZ00117 70 -DIKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKK-YCPNAFVICVTNPLD---CMVKVFQEKSGIPSNK 142 (319)
T ss_pred -HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecChHH---HHHHHHHHhhCCCccc
Confidence 6677 688875554332 234588888864 899998888899996 44566666652 134
Q ss_pred EEEcCCCC
Q 007456 466 VFASGSPF 473 (603)
Q Consensus 466 i~AtGSPf 473 (603)
+|++|+-.
T Consensus 143 viG~gt~l 150 (319)
T PTZ00117 143 ICGMAGVL 150 (319)
T ss_pred EEEecchH
Confidence 67777443
No 61
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=90.84 E-value=0.35 Score=49.75 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=87.3
Q ss_pred CCchhHHHHHHHHHHHHHHhCCC-CCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCC
Q 007456 295 DIQGTAGVALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (603)
Q Consensus 295 DiQGTaaV~lAgll~A~r~tg~~-l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~ 373 (603)
--+-||-=+..++-.+++..+.. ++. .|++|-|.|..|...|+.|.+. |. +=+-+-|++|.|++.
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g---~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~ 71 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEG---KRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDP 71 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTT---CEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEET
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcC
Confidence 34567777788888889986665 666 9999999999999999998875 32 335667888888864
Q ss_pred CC----CCChhhhccccccCCcCCc-c---cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH-HhhhcCCCCCeEEecC
Q 007456 374 RK----NLDPAAAPFAKDPGDFMGL-R---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK-AMRESDSVKPAIFAMS 444 (603)
Q Consensus 374 r~----~l~~~k~~fa~~~~~~~~~-~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~-~M~~~~~erPIIF~LS 444 (603)
.. .|..++...--.-...... + ...+=.+.+-.++.||||=+ +.++.+|++.+. .+. +.-+||.--+
T Consensus 72 ~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~---~~akiIvegA 147 (244)
T PF00208_consen 72 DGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK---SGAKIIVEGA 147 (244)
T ss_dssp TEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH---TT-SEEEESS
T ss_pred CCchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh---ccCcEEEeCc
Confidence 31 2222222111000000000 0 00111113445689999988 568999999999 773 3568999999
Q ss_pred C-CCC
Q 007456 445 N-PTM 448 (603)
Q Consensus 445 N-Pt~ 448 (603)
| |++
T Consensus 148 N~p~t 152 (244)
T PF00208_consen 148 NGPLT 152 (244)
T ss_dssp SSSBS
T ss_pred chhcc
Confidence 9 554
No 62
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.71 E-value=0.76 Score=48.71 Aligned_cols=84 Identities=14% Similarity=0.250 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-hHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-.|++..++-.+.+++. .++|++|.|- -|..+|.+|... | ..+.+++++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~---------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEG---KNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF---------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc----------
Confidence 4567889999999999998888 9999999988 899999988652 3 247777742
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.+.+++ .|++|-+.+.|+.++.++|+
T Consensus 198 -------------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -------------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247777877 79999999999999999776
No 63
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.69 E-value=0.35 Score=49.51 Aligned_cols=130 Identities=21% Similarity=0.253 Sum_probs=79.8
Q ss_pred EEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCC-CCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 326 IVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 326 iv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+. ..+|.+...++ ... .+ ....++.|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~-~i---~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADI-KV---SITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCc-EE---EECCchHHH
Confidence 579999 98899998877653 31 112579999986421111 11333333222 111 11 124578899
Q ss_pred hcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEEE
Q 007456 404 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVF 467 (603)
Q Consensus 404 V~~vkptvLIG~S~~~g~--------------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt--~Grai~ 467 (603)
+++ .|++|=+.+.++. .-+++++.|. +++...+++-.|||.. ....-+++++ ...-+|
T Consensus 68 ~~~--aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~~~p~a~~i~~tNP~d---~~t~~~~~~sg~~~~kvi 141 (263)
T cd00650 68 FKD--ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIE-KYSPDAWIIVVSNPVD---IITYLVWRYSGLPKEKVI 141 (263)
T ss_pred hCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEecCcHH---HHHHHHHHHhCCCchhEE
Confidence 988 7888754433221 3568888885 4899999999999996 5666667663 234466
Q ss_pred EcCCCCCc
Q 007456 468 ASGSPFEN 475 (603)
Q Consensus 468 AtGSPf~p 475 (603)
++|. .++
T Consensus 142 G~~~-ld~ 148 (263)
T cd00650 142 GLGT-LDP 148 (263)
T ss_pred Eeec-chH
Confidence 7664 443
No 64
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=90.68 E-value=0.41 Score=50.33 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.|++.+++-.+..++. .+++++|||-|+.+|+-.+.. .|. ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~---k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKG---KTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 3578888877777777 999999999998776655543 455 579999984
No 65
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.51 E-value=0.13 Score=48.37 Aligned_cols=114 Identities=22% Similarity=0.345 Sum_probs=67.3
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC-CcccCCCCCCChhhhccccccCCcCCcccCCCHH
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~-GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~ 401 (603)
.||.|+|| |..|..+|-+|+.. |+- +.|.|+|.+ ......--+|.+...+.-++. .-..+..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~------~i~~~~~ 64 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDINEDKAEGEALDLSHASAPLPSPV------RITSGDY 64 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESSHHHHHHHHHHHHHHHHGSTEEE------EEEESSG
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccCcccceeeehhhhhhhhhccccc------ccccccc
Confidence 38999999 99999999888763 553 469999987 211110013333322221111 0112456
Q ss_pred HHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007456 402 EVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~ 459 (603)
+.+++ .|++|=+.+. +|- +-+++.+.+.+ ++...+++-.|||.. ...+-+++
T Consensus 65 ~~~~~--aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~-~~p~~~vivvtNPvd---~~t~~~~~ 130 (141)
T PF00056_consen 65 EALKD--ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAK-YAPDAIVIVVTNPVD---VMTYVAQK 130 (141)
T ss_dssp GGGTT--ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHH-HSTTSEEEE-SSSHH---HHHHHHHH
T ss_pred ccccc--ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHH-hCCccEEEEeCCcHH---HHHHHHHH
Confidence 66776 6888844433 232 22456666654 789999999999975 44444444
No 66
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.09 E-value=0.85 Score=48.31 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-hHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-+|++..++-.+.+++. .+++++|-|- .|..+|.+|... | ..+.+++|+
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVG~Pla~lL~~~-----~-------atVtv~hs~---------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYG---LNAVVVGASNIVGRPMSLELLLA-----G-------CTVTVCHRF---------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CeEEEEECC----------
Confidence 3567889999999999998888 9999999998 999999988642 3 257777764
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.+.+++ .|++|-+.+.|+.|+.++|+
T Consensus 193 -------------------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk 222 (285)
T PRK10792 193 -------------------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK 222 (285)
T ss_pred -------------------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC
Confidence 0248888888 79999999999999997776
No 67
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.02 E-value=0.88 Score=48.53 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-+|++.=++-.|.+++. ++|+|+|.| ..|..+|.+|... |. .+++++++
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~G---k~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~---------- 192 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTG---KHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR---------- 192 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC----------
Confidence 3456788888889999998888 999999996 9999999999764 43 57776653
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LS 444 (603)
..++.|++++ .|++|-+-+.++.+++++++ +.-||.=.|
T Consensus 193 -------------------t~~l~e~~~~--ADIVIsavg~~~~v~~~~ik-------~GaiVIDvg 231 (301)
T PRK14194 193 -------------------STDAKALCRQ--ADIVVAAVGRPRLIDADWLK-------PGAVVIDVG 231 (301)
T ss_pred -------------------CCCHHHHHhc--CCEEEEecCChhcccHhhcc-------CCcEEEEec
Confidence 0258888888 79999998889999988744 455777666
No 68
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.01 E-value=2.1 Score=48.14 Aligned_cols=130 Identities=21% Similarity=0.193 Sum_probs=68.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhh----h--ccccccCC-cCC-cc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA----A--PFAKDPGD-FMG-LR 395 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k----~--~fa~~~~~-~~~-~~ 395 (603)
.||.|+|+|..|.+||..++.+ |. +++++|..-=-. +.+.... . .+...... ..+ ..
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~g~i~ 69 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHPEAE---RIIGEVLANAERAYAMLTDAPLPPEGRLT 69 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCHHHH---HHHHHHHHHHHHHHhhhccchhhhhhceE
Confidence 5799999999999999998764 54 588888731100 0111100 0 00000000 000 01
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcc--cCCcEEEEcCCC
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH--AGENIVFASGSP 472 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~w--t~Grai~AtGSP 472 (603)
...++.|++++ .|++| .+..... +.+++.+.+.+ +.+.-.|+..|--.. .+.+.-+. ..|+++++ .|
T Consensus 70 ~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~-~~~~~~iI~SsTsgi----~~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 70 FCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDA-AARPDALIGSSTSGF----LPSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred eeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCCCC----CHHHHHhhcCCcceEEEE--ec
Confidence 23579999988 68887 4433332 45566555533 444445665553332 23222222 24555555 68
Q ss_pred CCceec
Q 007456 473 FENVDL 478 (603)
Q Consensus 473 f~pv~~ 478 (603)
|.|+.+
T Consensus 140 ~nP~~~ 145 (495)
T PRK07531 140 YNPVYL 145 (495)
T ss_pred CCCccc
Confidence 888865
No 69
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.86 E-value=0.77 Score=39.19 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=59.5
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lv-D~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
||.|+|+|..|..+++.+... |. ...+|+++ +++. +.+.+.++.|... ....+..|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~~------~~~~~~~~~~~~~-------~~~~~~~~~ 58 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRSP------EKAAELAKEYGVQ-------ATADDNEEA 58 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESSH------HHHHHHHHHCTTE-------EESEEHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCcH------HHHHHHHHhhccc-------cccCChHHh
Confidence 789999999999999888664 43 23578855 5530 1122222222210 012379999
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007456 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (603)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNP 446 (603)
++. +|++| ++- +...-+++++.+ +...+..+|.-++||
T Consensus 59 ~~~--advvi-lav-~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 59 AQE--ADVVI-LAV-KPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH--TSEEE-E-S--GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hcc--CCEEE-EEE-CHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 996 78877 554 444456788887 336788899888876
No 70
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.84 E-value=0.63 Score=42.90 Aligned_cols=113 Identities=17% Similarity=0.301 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhcc
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~f 384 (603)
.|+.+|++..+.+++. .+++|+|+|..|..+++.+.+. |. .+++++|++- +......+.+
T Consensus 4 ~g~~~a~~~~~~~~~~---~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~~------~~~~~~~~~~ 63 (155)
T cd01065 4 LGFVRALEEAGIELKG---KKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRTL------EKAKALAERF 63 (155)
T ss_pred HHHHHHHHhhCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCCH------HHHHHHHHHH
Confidence 5899999988877777 9999999998888887777542 31 4688888741 1122211222
Q ss_pred ccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCC-CHHH---HHHhhhcCCCCCeEEecC-CCCC
Q 007456 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF-NEEV---LKAMRESDSVKPAIFAMS-NPTM 448 (603)
Q Consensus 385 a~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F-t~ev---v~~M~~~~~erPIIF~LS-NPt~ 448 (603)
...... ....++.++++. +|++|-+.. ++.. .+++ ...+ .+..+|+=+| +|..
T Consensus 64 ~~~~~~----~~~~~~~~~~~~--~Dvvi~~~~-~~~~~~~~~~~~~~~~----~~~~~v~D~~~~~~~ 121 (155)
T cd01065 64 GELGIA----IAYLDLEELLAE--ADLIINTTP-VGMKPGDELPLPPSLL----KPGGVVYDVVYNPLE 121 (155)
T ss_pred hhcccc----eeecchhhcccc--CCEEEeCcC-CCCCCCCCCCCCHHHc----CCCCEEEEcCcCCCC
Confidence 110000 012456666665 799997764 3332 1111 1122 3566777775 4544
No 71
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.80 E-value=0.63 Score=48.68 Aligned_cols=58 Identities=19% Similarity=0.414 Sum_probs=40.1
Q ss_pred cCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 288 RFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 288 ~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
++.-||-| ..|++.+++-.+..++. ++++|+|||-+|.+|+..+. +.|. ++|+++++.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~---k~vlI~GAGGagrAia~~La-----~~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKG---KKLTVIGAGGAATAIQVQCA-----LDGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHH-----HCCC------CEEEEEeCC
Confidence 35566777 34577888766666666 99999999866666555443 3465 469999874
No 72
>PTZ00325 malate dehydrogenase; Provisional
Probab=89.68 E-value=1.7 Score=46.53 Aligned_cols=108 Identities=23% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCH
Q 007456 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (603)
Q Consensus 322 ~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L 400 (603)
+-.||+|+|| |..|..+|..|+. .|+. ..+.|+|.+ .....-.+|.+.... .. .....+..+.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~-----~~~~-----~elvL~Di~-~~~g~a~Dl~~~~~~-~~----v~~~td~~~~ 70 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQ-----NPHV-----SELSLYDIV-GAPGVAADLSHIDTP-AK----VTGYADGELW 70 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhc-----CCCC-----CEEEEEecC-CCcccccchhhcCcC-ce----EEEecCCCch
Confidence 3379999999 9999999877652 2332 579999993 211111134332110 00 0000011334
Q ss_pred HHHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 401 LEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
.++++. .|++|=+.+. +|. ..+++++.|.+ ++.+.||+.-|||..
T Consensus 71 ~~~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~-~~~~~iviv~SNPvd 129 (321)
T PTZ00325 71 EKALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVAS-SAPKAIVGIVSNPVN 129 (321)
T ss_pred HHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH
Confidence 788888 6987755444 331 45688889964 888999999999996
No 73
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.64 E-value=0.95 Score=47.93 Aligned_cols=84 Identities=18% Similarity=0.320 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchh-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsA-g~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-.|++.=++-.+.+++. .+++++|.|.- |.-+|.+|... |. .+.+++++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~a-------tVt~~hs~---------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRG---AHAVVIGRSNIVGKPMAMLLLQA-----GA-------TVTICHSK---------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEecCC----------
Confidence 4567788899999999999888 99999999988 99999988652 32 46655432
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.+.+++ .|++|-+.+.++.|+.++++
T Consensus 192 -------------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -------------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -------------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1247788887 79999999999999997766
No 74
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=89.64 E-value=0.52 Score=49.49 Aligned_cols=57 Identities=26% Similarity=0.257 Sum_probs=40.9
Q ss_pred CCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 289 ~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
++=||-|-. |++.+++-.+..+++ .+++++|||-|+-+|+-.|.+ .|. ++|+++|+.
T Consensus 104 l~G~NTD~~--------Gf~~~L~~~~~~~~~---k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDVS--------GFGRGMEEGLPNAKL---DSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCHH--------HHHHHHHhcCcCcCC---CeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 445566654 477777754445666 999999999999888777655 354 579999874
No 75
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.48 E-value=0.49 Score=50.01 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=73.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhh-hccccccCC--cC-CcccCCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGD--FM-GLREGAS 399 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k-~~fa~~~~~--~~-~~~~~~~ 399 (603)
.||.|+|+|..|.++|-.++.. |+. +++++|..-- +...+ ..+.+.... .. ......+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~~------~VvlvDi~~~-------l~~g~a~d~~~~~~~~~~~~~i~~t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----ELA------DLVLLDVVEG-------IPQGKALDMYEASPVGGFDTKVTGTNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CCC------eEEEEeCCCC-------hhHHHHHhhhhhhhccCCCcEEEecCC
Confidence 4899999999999999977653 431 4999998322 22211 111111100 00 0112356
Q ss_pred HHHHhcccCCcEEEeecCCC---C-C------CCH----HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CC
Q 007456 400 LLEVVRKVKPHVLLGLSGVG---G-V------FNE----EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GE 463 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g-~------Ft~----evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt--~G 463 (603)
+.+ +++ .|++|=+.+.| | . ++- ++++.|.+ ++...+|+-.|||.. +...-+++++ .-
T Consensus 64 ~~~-~~~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~-~~p~~~iIv~tNP~d---i~t~~~~~~sg~~~ 136 (305)
T TIGR01763 64 YAD-TAN--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIME-HSPNPIIVVVSNPLD---AMTYVAWQKSGFPK 136 (305)
T ss_pred HHH-hCC--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHHCcCH
Confidence 766 565 68876333322 2 1 333 45555643 788999999999996 6777777774 22
Q ss_pred cEEEEcCCCCC
Q 007456 464 NIVFASGSPFE 474 (603)
Q Consensus 464 rai~AtGSPf~ 474 (603)
+-+|.+|.=.+
T Consensus 137 ~rviG~g~~ld 147 (305)
T TIGR01763 137 ERVIGQAGVLD 147 (305)
T ss_pred HHEEEeccchH
Confidence 34778774333
No 76
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.30 E-value=2.7 Score=46.15 Aligned_cols=159 Identities=17% Similarity=0.169 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
.|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+... |+ +++.+|... ....
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~g---ktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~~~ 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAE---RTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QEAE 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCc---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cccc
Confidence 3445788899988888888888 9999999999999999988764 44 588888631 0000
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEe-e--c-----CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcc
Q 007456 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG-L--S-----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNA 450 (603)
Q Consensus 379 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG-~--S-----~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~a 450 (603)
.. ....+|.|+++. .|+++= + + ..-+.|+++.+..|. +..++.=.|.-..--
T Consensus 154 --------~~------~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk----~gailIN~aRG~vVd 213 (381)
T PRK00257 154 --------GD------GDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR----PGAWLINASRGAVVD 213 (381)
T ss_pred --------cC------ccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC----CCeEEEECCCCcccC
Confidence 00 012479999887 687661 1 1 124889999999994 577888777643322
Q ss_pred CCCHHHHhcccCCcEEEEcCCCC--CceecCCCeeeccccccccccchhhHHHHHHhC
Q 007456 451 ECTAADAFKHAGENIVFASGSPF--ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506 (603)
Q Consensus 451 E~tpeda~~wt~Grai~AtGSPf--~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~ 506 (603)
|.--.+|++ .|+...|.=-=| +|. . +.... ..|+.+-|=|+-....++
T Consensus 214 e~AL~~aL~--~g~i~~a~LDV~e~EP~-~-~~~L~----~~nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 214 NQALREALL--SGEDLDAVLDVWEGEPQ-I-DLELA----DLCTIATPHIAGYSLDGK 263 (381)
T ss_pred HHHHHHHHH--hCCCcEEEEeCCCCCCC-C-Chhhh----hCCEEEcCccccCCHHHH
Confidence 222223332 454433321111 111 1 11111 137888887775555544
No 77
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.20 E-value=0.46 Score=43.65 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=30.4
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
++||+++|+|+-|.-+|+.|+...+ ++|.++|.+=+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----------~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----------GKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----------SEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----------CceeecCCcce
Confidence 4899999999999999999988744 68999999833
No 78
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.15 E-value=1.9 Score=45.95 Aligned_cols=127 Identities=17% Similarity=0.298 Sum_probs=77.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||.|+|||..|..+|-+|+. .|+. ..|.|+|.+--..++. .+|.+.. +|-+.. .. ...+. +
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~-~i----~~~~~-~ 69 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDINKEKAEGDAMDLSHAV-PFTSPT-KI----YAGDY-S 69 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCchhHHHHHHHHhhc-cccCCe-EE----EeCCH-H
Confidence 699999999999999987764 3553 5799999742211111 1343333 222211 11 11334 4
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEE
Q 007456 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 466 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt--~Grai 466 (603)
.+++ .|++|=+.+.+ |- +=+++++.|.+ ++...+|+-.|||.. +...-+++++ .-+-+
T Consensus 70 ~~~~--adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~-~~~~~~vivvsNP~d---~~~~~~~k~sg~p~~~v 143 (315)
T PRK00066 70 DCKD--ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMA-SGFDGIFLVASNPVD---ILTYATWKLSGFPKERV 143 (315)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCcHH---HHHHHHHHHhCCCHHHE
Confidence 5677 79888555543 31 11456777754 888999999999995 5566777766 33446
Q ss_pred EEcCCCC
Q 007456 467 FASGSPF 473 (603)
Q Consensus 467 ~AtGSPf 473 (603)
|.+|.--
T Consensus 144 iG~gt~L 150 (315)
T PRK00066 144 IGSGTSL 150 (315)
T ss_pred eecCchH
Confidence 6776443
No 79
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=89.02 E-value=1.5 Score=44.17 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhCC---------CCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 301 GVALAGLLGTVRAQGL---------SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 301 aV~lAgll~A~r~tg~---------~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
-+|-.|++-=|+-.+. +++. ++++|+|-+ ..|.-+|.||.. .| ..++.+|++|..
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~G---K~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~ 98 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYG---KTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQ 98 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccc
Confidence 3455666666665543 5666 999999986 567778777754 23 258999999988
Q ss_pred cCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHH
Q 007456 371 TKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKA 429 (603)
Q Consensus 371 ~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~ 429 (603)
...+.....|.+ .+. . ....+|.|.++. +|++|-.-+.++. ++.|+||.
T Consensus 99 ~~~~~~~~~hs~--t~~-~-----~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik~ 148 (197)
T cd01079 99 VFTRGESIRHEK--HHV-T-----DEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLKD 148 (197)
T ss_pred cccccccccccc--ccc-c-----chhhHHHHHhhh--CCEEEEccCCCCCccCHHHcCC
Confidence 765432111110 000 0 001248899988 7999999999998 89999883
No 80
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.98 E-value=0.33 Score=46.58 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=49.7
Q ss_pred CCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC-------------CcccCCCCCCChhhhcccccc
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-------------GLITKERKNLDPAAAPFAKDP 388 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~-------------GLv~~~r~~l~~~k~~fa~~~ 388 (603)
...+|||.|+|.+|.|.++++..... ++..+|.. ++.+...+.+.. +.|.+..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa------------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~ 84 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA------------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKAD 84 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC------------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchhh
Confidence 34899999999999999999877543 45555542 010100000000 0022211
Q ss_pred CCcCCcccCCCHHHHhcccCCcEEEeecC-----CCCCCCHHHHHHh
Q 007456 389 GDFMGLREGASLLEVVRKVKPHVLLGLSG-----VGGVFNEEVLKAM 430 (603)
Q Consensus 389 ~~~~~~~~~~~L~e~V~~vkptvLIG~S~-----~~g~Ft~evv~~M 430 (603)
..-........|.+.++. .|++|+..- .|-+||++.++.|
T Consensus 85 ~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m 129 (168)
T PF01262_consen 85 YYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSM 129 (168)
T ss_dssp CHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTS
T ss_pred hhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhcc
Confidence 000000122458888887 699997432 3568999999999
No 81
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=88.94 E-value=0.66 Score=48.43 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=41.5
Q ss_pred CCccccCCchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 289 FCMFNDDIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 289 ~~~FnDDiQGTaaV~lAgll~A~r~tg~--~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
+.=+|-|..| ++.+++-.+. .+++ ++++++|||.||-+|+-.|.+ .|. ++|+++++
T Consensus 100 l~G~NTD~~G--------~~~~l~~~~~~~~~~~---k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nR 157 (282)
T TIGR01809 100 WKGDNTDWDG--------IAGALANIGKFEPLAG---FRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINR 157 (282)
T ss_pred EEEecCCHHH--------HHHHHHhhCCccccCC---ceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeC
Confidence 4557777655 7777776553 4666 999999999998877776654 354 57999987
Q ss_pred C
Q 007456 367 D 367 (603)
Q Consensus 367 ~ 367 (603)
.
T Consensus 158 t 158 (282)
T TIGR01809 158 N 158 (282)
T ss_pred C
Confidence 4
No 82
>PLN02928 oxidoreductase family protein
Probab=88.89 E-value=3.3 Score=44.67 Aligned_cols=147 Identities=17% Similarity=0.198 Sum_probs=84.2
Q ss_pred chhHHHHHHHHHHHHHHh------------CCC-CCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 007456 297 QGTAGVALAGLLGTVRAQ------------GLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (603)
Q Consensus 297 QGTaaV~lAgll~A~r~t------------g~~-l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~l 363 (603)
+.+|--+++.+|+.+|-. +.+ -.+|.++++.|+|.|..|..+|+.+... |+ +|+.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 445666677777666632 001 1234459999999999999999998754 44 6888
Q ss_pred EecCCcccCCCC-CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCC
Q 007456 364 LDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKP 438 (603)
Q Consensus 364 vD~~GLv~~~r~-~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~~~~~erP 438 (603)
+|+.. ..... .+. .+......... . .....+|.|+++. .|+++-.- ...+.|+++.+..|. +..
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk----~ga 256 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVD-E-KGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK----KGA 256 (347)
T ss_pred ECCCC--Chhhhhhhc-ccccccccccc-c-cCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC----CCe
Confidence 88752 11000 000 00011000000 0 0023589999988 79988542 224899999999993 567
Q ss_pred eEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007456 439 AIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (603)
Q Consensus 439 IIF~LSNPt~~aE~tpeda~~wt~Grai~A 468 (603)
++.=.|.-.---|----+|++ .|+.-.|
T Consensus 257 ~lINvaRG~lVde~AL~~AL~--~g~i~gA 284 (347)
T PLN02928 257 LLVNIARGGLLDYDAVLAALE--SGHLGGL 284 (347)
T ss_pred EEEECCCccccCHHHHHHHHH--cCCeeEE
Confidence 888777544322222223333 5665544
No 83
>PRK05086 malate dehydrogenase; Provisional
Probab=88.66 E-value=2.5 Score=44.96 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=66.3
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHH
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~ 401 (603)
.||+|+|| |..|..+|.+|... .+.- ..+.++|++-. .++. -++.+. +....+.+ ....++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~~-----~el~L~d~~~~-~~g~alDl~~~-----~~~~~i~~-~~~~d~~ 64 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPAG-----SELSLYDIAPV-TPGVAVDLSHI-----PTAVKIKG-FSGEDPT 64 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCCc-----cEEEEEecCCC-CcceehhhhcC-----CCCceEEE-eCCCCHH
Confidence 48999999 99999998877442 1221 46899997522 1111 122211 00000000 0124677
Q ss_pred HHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 402 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
+.+++ .|++|=+.+.+ |. ..+++++.|.+ ++.+.+|+-.|||..
T Consensus 65 ~~l~~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~-~~~~~ivivvsNP~D 122 (312)
T PRK05086 65 PALEG--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAK-TCPKACIGIITNPVN 122 (312)
T ss_pred HHcCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchH
Confidence 88887 79888665543 31 55789999964 899999999999984
No 84
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.63 E-value=0.23 Score=47.05 Aligned_cols=88 Identities=18% Similarity=0.349 Sum_probs=49.9
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhh--ccccccCCcC-CcccCCCHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDFM-GLREGASLL 401 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~--~fa~~~~~~~-~~~~~~~L~ 401 (603)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .+...+. .|... .... ...-..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~---~i~~~~~n~~~~~~-~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE---EINETRQNPKYLPG-IKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH---HHHHHTSETTTSTT-SBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH---HHHHhCCCCCCCCC-cccCcccccccCHH
Confidence 689999999999999988764 3 36777766531111 1221111 11110 0000 011236799
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007456 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~ 432 (603)
+++++ .|++| +. .|-.+-+++++.++.
T Consensus 65 ~a~~~--ad~Ii-ia-vPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 65 EALED--ADIII-IA-VPSQAHREVLEQLAP 91 (157)
T ss_dssp HHHTT---SEEE-E--S-GGGHHHHHHHHTT
T ss_pred HHhCc--ccEEE-ec-ccHHHHHHHHHHHhh
Confidence 99987 57765 33 344567899999964
No 85
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.42 E-value=1.1 Score=46.27 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=26.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 5799999999999999988664 43 58888875
No 86
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.17 E-value=2.8 Score=43.96 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=26.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.||.|+|+|..|.++|..+..+ |. +++++|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-----G~-------~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-----GH-------RVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 6899999999999999999764 42 57777775
No 87
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.09 E-value=1.1 Score=47.22 Aligned_cols=85 Identities=19% Similarity=0.359 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+-.-+|-.|++.=++-.+.+++. .+++++|-+ .-|.-+|.++... | ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~G---k~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~--------- 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAG---KRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK--------- 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC---------
Confidence 34567888889989999998888 999999998 8888888877543 2 246666653
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.|.++. .|++|++-+.++.+|+++|+
T Consensus 186 --------------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 --------------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred --------------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0248888888 79999999999999999974
No 88
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=87.97 E-value=3.3 Score=45.71 Aligned_cols=189 Identities=11% Similarity=0.114 Sum_probs=98.2
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEE-EEecCccccccCCCCCCcccccchhHHHH-----HHhcCCCCCce-eeEEee
Q 007456 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQRI-LPVMLD 221 (603)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~GmgI~iGKl~LY-----~a~gGI~P~~~-lPV~LD 221 (603)
|.| +..|-..+..+|+.. .+++. +++| +.+.-+--.+.+-.-+..+....| ..+ |+..-.. +|+
T Consensus 173 G~~-~~~d~~el~~lL~~~---Gi~v~~~lp~-~~~~d~~~~~~~~~~~~~~~~~~~~A~~L~~~-GiP~~~~~~P~--- 243 (427)
T PRK02842 173 GSL-ADVVEDQLTLEFKKL---GIGVVGFLPA-RRFTELPAIGPGTVVALAQPFLSDTARALRER-GAKVLTAPFPL--- 243 (427)
T ss_pred EeC-CcchHHHHHHHHHHc---CCeeEEEeCC-ccHHHHhhcCcCcEEEEeCHHHHHHHHHHHHc-CCccccCCCCc---
Confidence 443 345556788888864 56664 7787 656655555443222222222111 344 5553221 332
Q ss_pred ccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhHH
Q 007456 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (603)
Q Consensus 222 vGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTaa 301 (603)
|- +-.|+|++++.+.+.. ..+.+-+.+++.|.+
T Consensus 244 -G~-------------------------~~T~~~L~~la~~~g~--------~~~~~~~~~~~er~~------------- 276 (427)
T PRK02842 244 -GP-------------------------EGTRAWLEAAAAAFGI--------DPDGLEEREAPAWER------------- 276 (427)
T ss_pred -Ch-------------------------HHHHHHHHHHHHHhCc--------CHhHHHHHHHHHHHH-------------
Confidence 21 1267888888777631 111122334444422
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhh
Q 007456 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381 (603)
Q Consensus 302 V~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k 381 (603)
+..++.-....+.. .|++|+|.+.-.+++++.|.+ +.|+. +..+-+. +.+++.+....
T Consensus 277 -----~~~~l~~~~~~l~G---krvai~g~~~~~~~la~~L~e----elGm~-------~v~v~t~---~~~~~~~~~~~ 334 (427)
T PRK02842 277 -----ARKALEPYRELLRG---KRVFFLPDSQLEIPLARFLSR----ECGME-------LVEVGTP---YLNRRFLAAEL 334 (427)
T ss_pred -----HHHHHHHhhhhcCC---cEEEEECCchhHHHHHHHHHH----hCCCE-------EEEeCCC---CCCHHHHHHHH
Confidence 44555555566667 999999998889999999876 24653 2222211 11111111111
Q ss_pred hccccccCCcCCcccCCCHHHHhcccCCcEEEeec
Q 007456 382 APFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (603)
Q Consensus 382 ~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (603)
+.+.... ......+...+.+.|+..|||.|||-|
T Consensus 335 ~~l~~~~-~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 335 ALLPDGV-RIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred HhccCCC-EEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 1121110 110001223468899999999999977
No 89
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.91 E-value=1.5 Score=46.35 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+-.-+|-+|++.=++-.+.+++. +++|++|-+ ..|.-+|.+|... |. .+.+++++
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~--------- 190 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKG---KDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF--------- 190 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC---------
Confidence 34567888889989999998888 999999998 8899999888642 32 35555442
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ .|++|-+.+.++.|+.++|+.
T Consensus 191 --------------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 191 --------------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCcccccCHHHcCC
Confidence 1247777877 799999999999999999883
No 90
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.72 E-value=1.8 Score=49.28 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=62.8
Q ss_pred CCchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC
Q 007456 295 DIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (603)
Q Consensus 295 DiQGTaaV~lAgll~A~r~tg~--~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~ 372 (603)
-|.|-.+|..|+-.-.-..+|. .+..+...|++|+|+|.+|+..+..+... |- +++.+|.+.-...
T Consensus 134 ~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rle 201 (511)
T TIGR00561 134 NIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVKE 201 (511)
T ss_pred HHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHH
Confidence 4555666555543332222221 11122238999999999999887766553 31 4777777643110
Q ss_pred CCCCCCh------------hhhccccccCC-cCCcccCCCHHHHhcccCCcEEEeecCCCC-----CCCHHHHHHhh
Q 007456 373 ERKNLDP------------AAAPFAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMR 431 (603)
Q Consensus 373 ~r~~l~~------------~k~~fa~~~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Ft~evv~~M~ 431 (603)
--..+.. ...-|++...+ .. ..+..-+.|.++. .|++|++.-++| +.|+++++.|.
T Consensus 202 ~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~-~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MK 275 (511)
T TIGR00561 202 QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFI-AAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMK 275 (511)
T ss_pred HHHHcCCeEEeccccccccccccceeecCHHHH-HHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCC
Confidence 0000100 00112211100 00 0011125566666 799999984444 49999999994
No 91
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.67 E-value=1.6 Score=46.23 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-.|++.-++-.+.+++. .++|++|.+ ..|.-+|.||.. .| ..+.+++++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~---------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISG---KHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK---------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC----------
Confidence 4567888899999999998888 999999975 678888888854 23 246666542
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.+.+++ +|++|.+.+.++.|+.++|+
T Consensus 192 -------------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 -------------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred -------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888888 79999999999999999986
No 92
>PRK15076 alpha-galactosidase; Provisional
Probab=87.62 E-value=0.82 Score=50.78 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=73.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC-CCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~-~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||.|+|||+.|. +..++..+....++. -..++|+|.+-=..+ ...-+......+ ...+. .....++.+
T Consensus 2 ~KIaIIGaGsvg~--~~~~~~~i~~~~~l~----~~evvLvDid~er~~~~~~l~~~~~~~~---~~~~~-i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVF--TKNLLGDILSVPALR----DAEIALMDIDPERLEESEIVARKLAESL---GASAK-ITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHh--HHHHHHHHhhCccCC----CCEEEEECCCHHHHHHHHHHHHHHHHhc---CCCeE-EEEECCHHH
Confidence 5899999999853 333433332122332 247999997521100 000011111111 11110 012457888
Q ss_pred HhcccCCcEEEeecCCCCC-------------------------------------CCHHHHHHhhhcCCCCCeEEecCC
Q 007456 403 VVRKVKPHVLLGLSGVGGV-------------------------------------FNEEVLKAMRESDSVKPAIFAMSN 445 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~M~~~~~erPIIF~LSN 445 (603)
+++. .|++|=..+.+|. .=.++++.|. ++++..+|+-.||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~-~~~p~a~iin~tN 148 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDME-EVCPDALLLNYVN 148 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHH-HHCCCeEEEEcCC
Confidence 8887 5777644433321 1246777884 4999999999999
Q ss_pred CCCccCCCHHHHhcccCCcEEEEcC-CCCC
Q 007456 446 PTMNAECTAADAFKHAGENIVFASG-SPFE 474 (603)
Q Consensus 446 Pt~~aE~tpeda~~wt~Grai~AtG-SPf~ 474 (603)
|.. +-.+-++.++. .-+|.+| +|+.
T Consensus 149 P~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 149 PMA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred hHH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 996 34444456654 4466887 6644
No 93
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=87.59 E-value=0.98 Score=46.82 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=36.1
Q ss_pred HHHHHHHHH-hCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 305 AGLLGTVRA-QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 305 Agll~A~r~-tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.|++++++- .+..+.. .+++|+|||.+|-+++..+.. .|. .+|+++++.
T Consensus 107 ~G~~~~l~~~~~~~~~~---k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVDLKG---KRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCCCCC---CEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 457777764 4566666 999999999888777777664 354 479999885
No 94
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.58 E-value=9.6 Score=38.68 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=69.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.||.|+|+|..|..+|..+... |.. ..+++++|++. +.....+..| .- ....+..++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~~----~~~v~v~~r~~------~~~~~~~~~~---g~-----~~~~~~~~~ 59 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GVP----AKDIIVSDPSP------EKRAALAEEY---GV-----RAATDNQEA 59 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CCC----cceEEEEcCCH------HHHHHHHHhc---CC-----eecCChHHH
Confidence 5799999999999998887653 321 24678777641 1111111111 00 012456777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC-CcEEEEcCCCCCceec
Q 007456 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASGSPFENVDL 478 (603)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~-Grai~AtGSPf~pv~~ 478 (603)
++. +|++| ++. +....+++++.+.. +. ..+|..++|-++. ++.-+|.. |..+ ...-|..|..+
T Consensus 60 ~~~--advVi-l~v-~~~~~~~v~~~l~~-~~-~~~vvs~~~gi~~-----~~l~~~~~~~~~i-v~~~P~~p~~~ 123 (267)
T PRK11880 60 AQE--ADVVV-LAV-KPQVMEEVLSELKG-QL-DKLVVSIAAGVTL-----ARLERLLGADLPV-VRAMPNTPALV 123 (267)
T ss_pred Hhc--CCEEE-EEc-CHHHHHHHHHHHHh-hc-CCEEEEecCCCCH-----HHHHHhcCCCCcE-EEecCCchHHH
Confidence 765 67766 443 44457888888853 33 3588999997763 33334543 3222 33456666555
No 95
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=87.45 E-value=2.4 Score=41.28 Aligned_cols=84 Identities=17% Similarity=0.327 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 300 aaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
--+|-.|++.-++-.+.+++. .+++++|.+ .-|.-+|.||... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~G---k~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~----------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEG---KKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK----------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT----EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT-----------
T ss_pred cCCCHHHHHHHHHhcCCCCCC---CEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC-----------
Confidence 446778888888999998888 999999998 4888888877663 22 35555554
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 379 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.++. .|++|-..++++.++.++||.
T Consensus 70 ------------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 ------------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp ------------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred ------------------CCcccceeee--ccEEeeeeccccccccccccC
Confidence 1247777876 799999999999999998874
No 96
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.38 E-value=3.5 Score=43.18 Aligned_cols=95 Identities=17% Similarity=0.281 Sum_probs=60.4
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
+|-|+|.|..|..+|..+.+. |. ++.++|++- +... .++.... ....++.|.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g~-------~V~~~dr~~------~~~~----~l~~~g~-----~~~~s~~~~~ 54 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----GH-------DCVGYDHDQ------DAVK----AMKEDRT-----TGVANLRELS 54 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----CC-------EEEEEECCH------HHHH----HHHHcCC-----cccCCHHHHH
Confidence 689999999999999988663 42 566677631 1111 2221111 1124566655
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
+.. ++|++|=+ ...+ ..+++++.++....+..||+-+||..+
T Consensus 55 ~~~~~~dvIi~~-vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 55 QRLSAPRVVWVM-VPHG-IVDAVLEELAPTLEKGDIVIDGGNSYY 97 (298)
T ss_pred hhcCCCCEEEEE-cCch-HHHHHHHHHHhhCCCCCEEEECCCCCc
Confidence 432 47888743 3345 889999888654456789999999764
No 97
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=87.17 E-value=1 Score=47.67 Aligned_cols=48 Identities=25% Similarity=0.550 Sum_probs=36.8
Q ss_pred HHHHHHHHhCC--CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 306 GLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 306 gll~A~r~tg~--~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
|++.+++-.+. ..+. +++|++|||-|+.+|+-.|.++ |. ++|+++++.
T Consensus 110 G~~~~L~~~~~~~~~~~---~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTG---KRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 47777776553 3345 9999999999999998877765 44 589999883
No 98
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.04 E-value=20 Score=37.43 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=65.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhc----ccc--ccC---C-cCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP----FAK--DPG---D-FMG 393 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~----fa~--~~~---~-~~~ 393 (603)
+||.|+|+|..|.+||..+... |. +++++|.+-= .+...+.. +.. +.. . ...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVMEG------ALERARGVIERALGVYAPLGIASAGMGR 66 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCHH------HHHHHHHHHHHHHHHhhhcccHHHHhhc
Confidence 5799999999999999988653 43 5888886410 11111111 000 000 0 000
Q ss_pred cccCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCC
Q 007456 394 LREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP 472 (603)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSP 472 (603)
.....++.++++. .|++| ++..+.. ..+++++.+.. ..+.-.|+. ||... .+.++..++.....-|..+-|
T Consensus 67 i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~-~~~~~~ii~-s~tsg---~~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 67 IRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDG-LCDPDTIFA-TNTSG---LPITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred eEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHH-hCCCCcEEE-ECCCC---CCHHHHHhhcCCcccEEEEcc
Confidence 0012467788876 57766 3332221 35667766643 333333442 44333 234455444433333444556
Q ss_pred CCceec
Q 007456 473 FENVDL 478 (603)
Q Consensus 473 f~pv~~ 478 (603)
|.|...
T Consensus 139 ~~p~~~ 144 (311)
T PRK06130 139 FTPADV 144 (311)
T ss_pred CCCCcc
Confidence 666543
No 99
>PRK08605 D-lactate dehydrogenase; Validated
Probab=86.92 E-value=4.7 Score=43.16 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=73.8
Q ss_pred chhHHHHHHHHHHHHHHh---------C-----CC--CCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007456 297 QGTAGVALAGLLGTVRAQ---------G-----LS--LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (603)
Q Consensus 297 QGTaaV~lAgll~A~r~t---------g-----~~--l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~ 360 (603)
+.+|=-+++.+|+.+|-. | .. -.+|.+++|.|+|.|..|..+|+.+..+ .|+ +
T Consensus 104 ~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~ 172 (332)
T PRK08605 104 ESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------D 172 (332)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------E
Confidence 445556677777766521 1 00 1245559999999999999999998532 243 6
Q ss_pred EEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCC
Q 007456 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSV 436 (603)
Q Consensus 361 i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~e 436 (603)
+|.+|+..- .....++. ...+|.|+++. .|+++=+-- ..+.|+++.++.|. +
T Consensus 173 V~~~d~~~~---------~~~~~~~~---------~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk----~ 228 (332)
T PRK08605 173 VVAYDPFPN---------AKAATYVD---------YKDTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK----K 228 (332)
T ss_pred EEEECCCcc---------HhHHhhcc---------ccCCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC----C
Confidence 888887520 00011111 12479999987 798874421 23678888888883 5
Q ss_pred CCeEEecCCCCC
Q 007456 437 KPAIFAMSNPTM 448 (603)
Q Consensus 437 rPIIF~LSNPt~ 448 (603)
..++.=+|.=..
T Consensus 229 gailIN~sRG~~ 240 (332)
T PRK08605 229 GAVFVNCARGSL 240 (332)
T ss_pred CcEEEECCCCcc
Confidence 678887776443
No 100
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=86.91 E-value=0.94 Score=50.02 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=71.7
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhcccccc-CCcCCcccCCCHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP-GDFMGLREGASLLEV 403 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~-~~~~~~~~~~~L~e~ 403 (603)
||.|+|||+.|.+.+- +..+.....+ +-.+++|+|.+-=..+ .+...-+.++... ..+. .....++.|+
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~e~l~---~~~~~~~~~~~~~~~~~~-I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDEERLE---TVEILAKKIVEELGAPLK-IEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCHHHHH---HHHHHHHHHHHhcCCCeE-EEEeCCHHHH
Confidence 7999999998887652 2112201111 2247999997521111 0111001111110 0000 1124678999
Q ss_pred hcccCCcEEEeecCCC---------------CCCC---------------------HHHHHHhhhcCCCCCeEEecCCCC
Q 007456 404 VRKVKPHVLLGLSGVG---------------GVFN---------------------EEVLKAMRESDSVKPAIFAMSNPT 447 (603)
Q Consensus 404 V~~vkptvLIG~S~~~---------------g~Ft---------------------~evv~~M~~~~~erPIIF~LSNPt 447 (603)
++. .|++|=.-..+ |.|. .++.+.|. +++++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~-~~~p~a~~i~~tNPv 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIE-ELCPDAWLLNYANPM 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHH-HHCCCCEEEEcCChH
Confidence 987 68776433211 1221 26667774 378899999999999
Q ss_pred CccCCCHHHHhcccCCcEEEEcC-CC
Q 007456 448 MNAECTAADAFKHAGENIVFASG-SP 472 (603)
Q Consensus 448 ~~aE~tpeda~~wt~Grai~AtG-SP 472 (603)
. +..+-+++.++ .-++.+| +|
T Consensus 149 ~---i~t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 A---ELTWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred H---HHHHHHHHhCC-CCEEEECCcH
Confidence 7 55555667776 5566776 44
No 101
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.85 E-value=2.3 Score=44.40 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=56.1
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
||.|+|.|..|..+|..|... |. +++++|+.. +....+..... ....++.|++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~~----------~~~~~~~~~g~-----~~~~~~~e~~ 54 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRNP----------EAVEALAEEGA-----TGADSLEELV 54 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECCH----------HHHHHHHHCCC-----eecCCHHHHH
Confidence 799999999999999998763 42 577777751 11112221111 1124677777
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
+.. +||++|=+- ..+...++++..+.....+..||+-+|+-.+
T Consensus 55 ~~~~~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~~ 98 (301)
T PRK09599 55 AKLPAPRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSYY 98 (301)
T ss_pred hhcCCCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 665 366655332 2344556666555433445677887776443
No 102
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.76 E-value=4.3 Score=44.67 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 297 QGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+..|=-+++.+++..|-.|..|.+ .++.|+|.|..|..+|+.+... |+ ++..+|+. +..
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~g---ktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~ 151 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHD---RTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD 151 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc
Confidence 345556788888888877877777 9999999999999999998764 44 68888853 110
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEe---ecC-----CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG---LSG-----VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG---~S~-----~~g~Ft~evv~~M~~~~~erPIIF~LSN 445 (603)
. ... ....+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|.
T Consensus 152 -~-------~~~------~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk----~gailIN~aR 208 (378)
T PRK15438 152 -R-------GDE------GDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK----PGAILINACR 208 (378)
T ss_pred -c-------ccc------cccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC----CCcEEEECCC
Confidence 0 000 012479999877 688771 121 24789999999993 5778887665
No 103
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.72 E-value=16 Score=37.73 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=55.0
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~G-ls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~ 401 (603)
..||.|+|+|..|..+|+.+... | +.. .+|+++|+. . .+....++.... . ....+..
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~~~----~~v~v~~r~-------~--~~~~~~l~~~~g-~---~~~~~~~ 60 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVVKG----EQITVSNRS-------N--ETRLQELHQKYG-V---KGTHNKK 60 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCCCc----ceEEEECCC-------C--HHHHHHHHHhcC-c---eEeCCHH
Confidence 47999999999999999988653 3 211 356766642 0 111122221100 0 0124577
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
|+++. .|++| ++-.+. ..+++++.+.....+..+|..+++-++
T Consensus 61 e~~~~--aDvVi-lav~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 61 ELLTD--ANILF-LAMKPK-DVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred HHHhc--CCEEE-EEeCHH-HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 77765 57655 332233 345666766432345667877765543
No 104
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.70 E-value=3.1 Score=44.52 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=74.7
Q ss_pred eEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc--ccCC-CCCCChhhhccccccCCcCCcccCCCH
Q 007456 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (603)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL--v~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~L 400 (603)
||.|.|| |..|..+|..|+. .|+-.++-...+.|+|.+.- ..++ .-+|.+...++.+.. . -..+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~-----i~~~~ 70 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-V-----ITTDP 70 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-E-----EecCh
Confidence 7999999 9999999987664 34432223347999998742 1111 124554443443321 1 12457
Q ss_pred HHHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcC-CCCCeEEecCCCCCccCCCHHHHhccc
Q 007456 401 LEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHA 461 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~-~erPIIF~LSNPt~~aE~tpeda~~wt 461 (603)
.|++++ .|++|=+.+. +|- .-+++++.|.+ + ++.-||+-.|||.. +...-+++++
T Consensus 71 ~~~~~~--aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~s 140 (323)
T cd00704 71 EEAFKD--VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK-VAKPTVKVLVVGNPAN---TNALIALKNA 140 (323)
T ss_pred HHHhCC--CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHH-hCCCCeEEEEeCCcHH---HHHHHHHHHc
Confidence 788888 6887744443 342 12567777754 7 48999999999985 5555566654
No 105
>PRK08374 homoserine dehydrogenase; Provisional
Probab=86.69 E-value=4.3 Score=43.63 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=65.3
Q ss_pred ceEEEeCcchhHHHHHHHHHH---HHHHhcCCChhhhcCeEEEEecCCcccCCCC-CC---ChhhhccccccCCcCC--c
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ---AAARMAGNNDAFARNKFFLLDKDGLITKERK-NL---DPAAAPFAKDPGDFMG--L 394 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~---~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~-~l---~~~k~~fa~~~~~~~~--~ 394 (603)
.+|.++|.|..|.+++++|.+ .+.++.|... +=+-+.|++|-+...+. ++ ..+++.+... ..+.. .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~-~~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKL-SNWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCch-hhcccccc
Confidence 689999999999999999977 3333345432 22456799998876542 22 2222222211 01110 0
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007456 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (603)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF 441 (603)
....++.|.++...+||+|-+++ +... .++++...+ ...++|.
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~-~~~a-~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTN-DKNA-HEWHLEALK--EGKSVVT 120 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCC-cHHH-HHHHHHHHh--hCCcEEE
Confidence 01137889998778999999985 3333 444444322 5678875
No 106
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.61 E-value=1.9 Score=45.67 Aligned_cols=93 Identities=20% Similarity=0.315 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-+|++.=++-.+.+++. .+++|+|. |..|.-+|.+|... |. .+.++.++
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~G---k~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~---------- 191 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEG---KHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR---------- 191 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC----------
Confidence 3567778888888999998888 99999999 99999999999763 43 34444221
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LS 444 (603)
..+|.+.+++ .|++|-.-+.++.+++++++ +..+|.=.|
T Consensus 192 -------------------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik-------~GavVIDvg 230 (284)
T PRK14179 192 -------------------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK-------EGAVVIDVG 230 (284)
T ss_pred -------------------CCCHHHHHhh--CCEEEEecCccccCCHHHcc-------CCcEEEEec
Confidence 1258888888 79999999999999998744 345665554
No 107
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.60 E-value=0.72 Score=49.42 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=71.2
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccCC-----CHHHHhcccCCcEEEEcCCC
Q 007456 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAEC-----TAADAFKHAGENIVFASGSP 472 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~---~aE~-----tpeda~~wt~Grai~AtGSP 472 (603)
.++-+.++|+++|..||. +.-..++-+.+ . +-+|=|+.=.-||.. +.|+ |.++++++.. . |+..-=
T Consensus 103 ~~l~~~~~~~aIlaSnTS-~l~~s~la~~~-~-~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lG 176 (321)
T PRK07066 103 ERISRAAKPDAIIASSTS-GLLPTDFYARA-T-HPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALG 176 (321)
T ss_pred HHHHHhCCCCeEEEECCC-ccCHHHHHHhc-C-CcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcC
Confidence 455567889999998885 66555555555 2 556668888899964 4343 4455544321 1 122222
Q ss_pred CCceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 007456 473 FENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (603)
Q Consensus 473 f~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 520 (603)
..||.. +...||-.=|-..+|-+-=+.-+..--..|.+-+-.|-+
T Consensus 177 k~pV~v---~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~ 221 (321)
T PRK07066 177 MRPLHV---RKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR 221 (321)
T ss_pred CEeEec---CCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 346655 236899999999998888777777766677776666644
No 108
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.52 E-value=2.3 Score=45.31 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHHHHhC--CC---eEEEeecCCCchHHHHHHHHh--hcCCccccCC----------chhHHHHHHHHHHHHHHhC
Q 007456 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI----------QGTAGVALAGLLGTVRAQG 315 (603)
Q Consensus 253 defv~av~~~~--P~---~~Iq~EDf~~~naf~iL~ryr--~~~~~FnDDi----------QGTaaV~lAgll~A~r~tg 315 (603)
+||++.+++.- |+ .++|+==.+.-|..++++... +.+=.||..- .+-.-+|-.|++.=++..+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~ 154 (295)
T PRK14174 75 EHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYN 154 (295)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhC
Confidence 46666666663 53 366654333444444444322 1122222211 2234466778888888889
Q ss_pred CCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCc
Q 007456 316 LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~ 394 (603)
.+++. +++||+|.+ ..|.-+|.||.+.+. +.| ..+.++.++
T Consensus 155 i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------atVt~~hs~--------------------------- 196 (295)
T PRK14174 155 IETKG---KHCVVVGRSNIVGKPMANLMLQKLK-ESN-------CTVTICHSA--------------------------- 196 (295)
T ss_pred CCCCC---CEEEEECCCCcchHHHHHHHHhccc-cCC-------CEEEEEeCC---------------------------
Confidence 88888 999999986 578888888875332 122 245555542
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.+.+++ .|++|+..+.++.|++++||
T Consensus 197 --t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 --TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred --chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1348888888 79999999999999999995
No 109
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.51 E-value=1.8 Score=44.45 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=57.2
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCC--cCCcccCCCHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMGLREGASLLE 402 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~--~~~~~~~~~L~e 402 (603)
||.|+|+|+.|..+|..|.+. | .+++++++ +--.+ .+............+ .. .....++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~---~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 64 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAK---ALRERGLVIRSDHGDAVVP-GPVITDPEE 64 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHH---HHHhCCeEEEeCCCeEEec-ceeecCHHH
Confidence 799999999999999888663 3 25788887 21100 010000000000000 00 001234566
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
+++. +|++|=+. +....+++++.++....+..+|+.+.|.-.
T Consensus 65 ~~~~--~d~vilav--k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 65 LTGP--FDLVILAV--KAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred ccCC--CCEEEEEe--cccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 5544 67665333 223568999988654456678888999864
No 110
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.14 E-value=2.5 Score=44.16 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=56.1
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
||.|+|.|..|..+|..+... |. +++++|++. +....+++... ....++.|++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----------~~~~~~~~~g~-----~~~~s~~~~~ 54 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----------EAVDVAGKLGI-----TARHSLEELV 54 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----------HHHHHHHHCCC-----eecCCHHHHH
Confidence 689999999999999988653 43 477777641 11111211110 1234677777
Q ss_pred cccC-CcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 405 RKVK-PHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 405 ~~vk-ptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
+..+ ++++|=+- ......++++..+.....+..+|.=+|+-.+
T Consensus 55 ~~~~~advVi~~v-p~~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 55 SKLEAPRTIWVMV-PAGEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred HhCCCCCEEEEEe-cCchHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 6643 56655322 2333556666665433345678888877444
No 111
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=85.89 E-value=2.3 Score=41.11 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=72.4
Q ss_pred HhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcC
Q 007456 313 AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM 392 (603)
Q Consensus 313 ~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~ 392 (603)
..+..+.. +++.|+|.|..|..+|+++....+ +|+.+|+..- +.. .+....
T Consensus 29 ~~~~~l~g---~tvgIiG~G~IG~~vA~~l~~fG~------------~V~~~d~~~~---------~~~-~~~~~~---- 79 (178)
T PF02826_consen 29 FPGRELRG---KTVGIIGYGRIGRAVARRLKAFGM------------RVIGYDRSPK---------PEE-GADEFG---- 79 (178)
T ss_dssp TTBS-STT---SEEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSCH---------HHH-HHHHTT----
T ss_pred CCccccCC---CEEEEEEEcCCcCeEeeeeecCCc------------eeEEecccCC---------hhh-hccccc----
Confidence 34455555 999999999999999999986533 6998998632 111 111110
Q ss_pred CcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007456 393 GLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (603)
Q Consensus 393 ~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~A 468 (603)
....+|.|+++. .|+++=.- ..-+.|+++.++.|. +.-++.-.|.-.---|..--+|++ +|+.--|
T Consensus 80 --~~~~~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk----~ga~lvN~aRG~~vde~aL~~aL~--~g~i~ga 149 (178)
T PF02826_consen 80 --VEYVSLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK----PGAVLVNVARGELVDEDALLDALE--SGKIAGA 149 (178)
T ss_dssp --EEESSHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST----TTEEEEESSSGGGB-HHHHHHHHH--TTSEEEE
T ss_pred --ceeeehhhhcch--hhhhhhhhccccccceeeeeeeeeccc----cceEEEeccchhhhhhhHHHHHHh--hccCceE
Confidence 013579999988 68887432 124899999999993 566777777654422333333333 5665533
No 112
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.72 E-value=3.1 Score=43.71 Aligned_cols=128 Identities=18% Similarity=0.302 Sum_probs=76.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||.|+|+|.+|..+|..++. .|+. .+|+++|++-=..++- .+|.+......... .. ...+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~-----~g~~-----~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~i----~~~~~~- 64 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVN-----QGIA-----DELVLIDINEEKAEGEALDLEDALAFLPSPV-KI----KAGDYS- 64 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHhHhhHHHHhhccCCCe-EE----EcCCHH-
Confidence 389999999999999988754 3542 4799999852221111 12322211111110 00 112333
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcEE
Q 007456 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIV 466 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~--Grai 466 (603)
.+++ .|++|=+.+.+ |- .=+++.+.|.+ ++..-+|+-.|||.. +...-++++++ -+-+
T Consensus 65 ~l~~--aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v 138 (306)
T cd05291 65 DCKD--ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVASNPVD---VITYVVQKLSGLPKNRV 138 (306)
T ss_pred HhCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecChHH---HHHHHHHHHhCcCHHHE
Confidence 4555 79999776654 21 12566777754 889999999999996 56666666531 1346
Q ss_pred EEcCCCC
Q 007456 467 FASGSPF 473 (603)
Q Consensus 467 ~AtGSPf 473 (603)
|.+|.-.
T Consensus 139 ~g~gt~L 145 (306)
T cd05291 139 IGTGTSL 145 (306)
T ss_pred eeccchH
Confidence 7777553
No 113
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.64 E-value=4.6 Score=46.39 Aligned_cols=157 Identities=21% Similarity=0.243 Sum_probs=98.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC--CC-CCCChhhhccccccCCcCCcccCCC-
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK--ER-KNLDPAAAPFAKDPGDFMGLREGAS- 399 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~--~r-~~l~~~k~~fa~~~~~~~~~~~~~~- 399 (603)
--++|+|+|..|+|||.-+.. .|+ ++.|++++-+=.- +| .+|=+.=..|+...+ -+
T Consensus 13 ~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e--------~~l 72 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQYE--------FSL 72 (532)
T ss_pred CCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhcc--------hHH
Confidence 669999999999999988765 477 5889998877532 33 244444445543321 12
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCC--CCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCcee
Q 007456 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS--VKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVD 477 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~--erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~ 477 (603)
..|++.. .+++..+|- |+ +.|.+||..+=
T Consensus 73 vrEal~E-----------------r~vL~~~AP-H~v~p~~~~lp~~~~------------------------------- 103 (532)
T COG0578 73 VREALAE-----------------REVLLRIAP-HLVEPLPFLLPHLPG------------------------------- 103 (532)
T ss_pred HHHHHHH-----------------HHHHHHhCc-cccccCcCeEeccCC-------------------------------
Confidence 4455544 467777753 43 34445544321
Q ss_pred cCCCeeeccccccccccchhhHHHHHHhC-Cccc--CHHHHHHHHHHHhccCCCCCCCCCccccCCCCcchhhHHHHHHH
Q 007456 478 LGNGKIGHVNQANNMYLFPGIGLGTLLSG-ARFI--TDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAV 554 (603)
Q Consensus 478 ~~~G~~~~p~Q~NN~~iFPGiglG~~~~~-a~~I--td~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ir~Vs~~VA~AV 554 (603)
.---.+++.|+.+...+++ .+.. +..+...++..+.-.+.++.+..+..||.-.-- - .+...+|
T Consensus 104 ----------~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vd--d-aRLv~~~ 170 (532)
T COG0578 104 ----------LRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVD--D-ARLVAAN 170 (532)
T ss_pred ----------cccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceec--h-HHHHHHH
Confidence 0012577889999999999 3333 222233356666666766666668888885442 1 2667788
Q ss_pred HHHHHHcC
Q 007456 555 LRAAVEED 562 (603)
Q Consensus 555 a~~A~~~G 562 (603)
++.|.+.|
T Consensus 171 a~~A~~~G 178 (532)
T COG0578 171 ARDAAEHG 178 (532)
T ss_pred HHHHHhcc
Confidence 99999888
No 114
>PLN03139 formate dehydrogenase; Provisional
Probab=85.61 E-value=17 Score=40.10 Aligned_cols=224 Identities=16% Similarity=0.093 Sum_probs=125.5
Q ss_pred HhCCCe-EEEeecCCCchHHHHHHHHhhcCCccccCC---chhHHHHHHHHHHHHHHh---------C--------CCCC
Q 007456 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G--------LSLT 319 (603)
Q Consensus 261 ~~~P~~-~Iq~EDf~~~naf~iL~ryr~~~~~FnDDi---QGTaaV~lAgll~A~r~t---------g--------~~l~ 319 (603)
...|+. +|+.--.+..| ..+-.--+..+.+.|--- +-+|=-+++-+|+.+|-. | ..-.
T Consensus 117 ~~ap~LK~I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 195 (386)
T PLN03139 117 KKAKNLELLLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAY 195 (386)
T ss_pred hhCCCccEEEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCc
Confidence 446777 78877777666 333322334577777532 234555688888877721 1 0113
Q ss_pred CCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCC
Q 007456 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+...-. .. .+..-+ ....+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~~~----~~--~~~~g~---------~~~~~ 248 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKMDP----EL--EKETGA---------KFEED 248 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCcch----hh--HhhcCc---------eecCC
Confidence 56669999999999999999999764 43 577788754210 00 000000 01247
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCc
Q 007456 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~p 475 (603)
|.|+++. .|+++=..- .-+.|+++.+..|. +.-+++=.|.=.---|---.+|++ .|+.-.|..-=|.+
T Consensus 249 l~ell~~--sDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~l~GAaLDV~~~ 320 (386)
T PLN03139 249 LDAMLPK--CDVVVINTPLTEKTRGMFNKERIAKMK----KGVLIVNNARGAIMDTQAVADACS--SGHIGGYGGDVWYP 320 (386)
T ss_pred HHHHHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC----CCeEEEECCCCchhhHHHHHHHHH--cCCceEEEEcCCCC
Confidence 9999977 788773321 12789999999993 566777666533311222223333 56666665543432
Q ss_pred eecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCC
Q 007456 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMT 527 (603)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 527 (603)
-..+ ....--+..|+.+-|=++-....+ -..|...+++-|-....
T Consensus 321 EPlp--~d~pL~~~pNvilTPHiag~t~~~-----~~r~~~~~~~nl~~~~~ 365 (386)
T PLN03139 321 QPAP--KDHPWRYMPNHAMTPHISGTTIDA-----QLRYAAGVKDMLDRYFK 365 (386)
T ss_pred CCCC--CCChhhcCCCeEEcccccccCHHH-----HHHHHHHHHHHHHHHHc
Confidence 2211 001112345888888876322222 22344445555555543
No 115
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.48 E-value=21 Score=36.86 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=25.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+||.|+|+|..|.++|..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988553 53 58888854
No 116
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=85.38 E-value=0.88 Score=50.87 Aligned_cols=128 Identities=23% Similarity=0.316 Sum_probs=79.7
Q ss_pred CCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC-CChhhhccccc-cCCcCCcccCCC
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKD-PGDFMGLREGAS 399 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~-l~~~k~~fa~~-~~~~~~~~~~~~ 399 (603)
...||+|+||||. ...+++...+.+.+.++. +.|||+|-+ .+|.+ ....-+.+.+. ..++. .....+
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~k-v~~ttd 70 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVK-VEATTD 70 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEecC
Confidence 3489999999998 467788877776677775 789999963 33321 11111222222 11111 123468
Q ss_pred HHHHhcccCCcEEE---------------------ee-----cCCCCCCC--------HHHHHHhhhcCCCCCeEEecCC
Q 007456 400 LLEVVRKVKPHVLL---------------------GL-----SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSN 445 (603)
Q Consensus 400 L~e~V~~vkptvLI---------------------G~-----S~~~g~Ft--------~evv~~M~~~~~erPIIF~LSN 445 (603)
+.||++. +|..| |+ .+.||.|. -|+++.| ++.|+.--++=.+|
T Consensus 71 ~~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m-~~~~P~Aw~lNytN 147 (442)
T COG1486 71 RREALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDM-EKVCPNAWMLNYTN 147 (442)
T ss_pred HHHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHH-HHhCCCceEEeccC
Confidence 9999988 56665 11 12223222 4889999 45999999999999
Q ss_pred CCCccCCCHHHHhcccCC-cEE
Q 007456 446 PTMNAECTAADAFKHAGE-NIV 466 (603)
Q Consensus 446 Pt~~aE~tpeda~~wt~G-rai 466 (603)
|-. ++ .|-+++|+.+ |.|
T Consensus 148 P~~--~v-TeAv~r~~~~~K~V 166 (442)
T COG1486 148 PAA--IV-TEAVRRLYPKIKIV 166 (442)
T ss_pred hHH--HH-HHHHHHhCCCCcEE
Confidence 987 34 4555666654 444
No 117
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.29 E-value=11 Score=37.62 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=65.1
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
..||.|+|+|..|..++..+... |.. -.++++.+++.- .+.+...+..|- . ....++.|
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~~-----~~~~~~~~~~~~---~-----~~~~~~~~ 62 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRSN-----VEKLDQLQARYN---V-----STTTDWKQ 62 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCCC-----HHHHHHHHHHcC---c-----EEeCChHH
Confidence 38999999999999998887653 210 012466555420 011222222221 0 11246788
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC-CcEEEEcC
Q 007456 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASG 470 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~-Grai~AtG 470 (603)
++++ .|++| ++..+. .-+++++.++. +-...+|+.++.-.+. +..-+|.+ ++.++-++
T Consensus 63 ~~~~--~DiVi-iavp~~-~~~~v~~~l~~-~~~~~~vis~~~gi~~-----~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 63 HVTS--VDTIV-LAMPPS-AHEELLAELSP-LLSNQLVVTVAAGIGP-----SYLEERLPKGTPVAWIM 121 (245)
T ss_pred HHhc--CCEEE-EecCHH-HHHHHHHHHHh-hccCCEEEEECCCCCH-----HHHHHHcCCCCeEEEEC
Confidence 8875 68776 444344 44889998853 3234577777766553 34444443 34455454
No 118
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.17 E-value=6.3 Score=41.73 Aligned_cols=129 Identities=12% Similarity=0.216 Sum_probs=87.8
Q ss_pred HHHHHHHHHhC--CCe---EEEe---ecCCCchHHHHHHHHhhcCCccccCCc--------hhHHHHHHHHHHHHHHhCC
Q 007456 253 DEFMEAVHARW--PKA---IVQF---EDFQMKWAFETLERYRKRFCMFNDDIQ--------GTAGVALAGLLGTVRAQGL 316 (603)
Q Consensus 253 defv~av~~~~--P~~---~Iq~---EDf~~~naf~iL~ryr~~~~~FnDDiQ--------GTaaV~lAgll~A~r~tg~ 316 (603)
+||.+.++++- +++ ++|+ +.+.....++.++-.+| +=.||..-+ +-.-+|-+|++.=++-.+.
T Consensus 76 ~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KD-VDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~~i 154 (278)
T PRK14172 76 EDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKD-IDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSLNI 154 (278)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccc-cCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC
Confidence 57777777774 543 7776 44443333333322222 222332222 2356788889999999999
Q ss_pred CCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
+++. ++++++|-+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 155 ~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~---------------------------- 191 (278)
T PRK14172 155 DIEG---KEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK---------------------------- 191 (278)
T ss_pred CCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 8888 999999975 578888888854 232 46767653
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.+.+++ +|++|-..+.++.|++|+|+
T Consensus 192 -T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 -TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred -CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1247788888 79999999999999999887
No 119
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=85.05 E-value=6.6 Score=41.83 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=62.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccc-cCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~-~~~~~~~~~~~~L~e 402 (603)
.+++|+|+|..|..++..+... .++ ++|+++++. .. ........+.+. .-++ ....++.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~--~a~~~a~~~~~~~g~~v---~~~~~~~~ 190 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SA--KAEALALQLSSLLGIDV---TAATDPRA 190 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HH--HHHHHHHHHHhhcCceE---EEeCCHHH
Confidence 6899999999998888877542 244 478888773 11 111111112111 0011 12367999
Q ss_pred HhcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHH
Q 007456 403 VVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 457 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~-~g~Ft~evv~~M~~~~~erPIIF~LSNPt~-~aE~tpeda 457 (603)
+++. .|++|-+++. ...|+.++++.- -.|.++.--++ +.|+.++-.
T Consensus 191 av~~--aDiVvtaT~s~~p~i~~~~l~~g-------~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 191 AMSG--ADIIVTTTPSETPILHAEWLEPG-------QHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred Hhcc--CCEEEEecCCCCcEecHHHcCCC-------cEEEeeCCCCCCceecCHHHH
Confidence 9986 7999977643 356777776642 24445543232 358887653
No 120
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=84.96 E-value=4.9 Score=36.86 Aligned_cols=97 Identities=14% Similarity=0.233 Sum_probs=48.6
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. ++.+ ++... + .+.+-..+|.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~-d~g~----~~~~~-~-~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK-DVGE----LAGIG-P-LGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS-BCHH----HCTSS-T--SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc-hhhh----hhCcC-C-cccccchhHHH
Confidence 38999999 99999999988772 444 2367788876111111 1111 11100 0 00112356777
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEec
Q 007456 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM 443 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~L 443 (603)
+++. +||+|=+|. |.+ ..+.++...+ +..|+|..=
T Consensus 64 ~~~~--~DVvIDfT~-p~~-~~~~~~~~~~--~g~~~ViGT 98 (124)
T PF01113_consen 64 LLEE--ADVVIDFTN-PDA-VYDNLEYALK--HGVPLVIGT 98 (124)
T ss_dssp HTTH---SEEEEES--HHH-HHHHHHHHHH--HT-EEEEE-
T ss_pred hccc--CCEEEEcCC-hHH-hHHHHHHHHh--CCCCEEEEC
Confidence 7766 777777663 221 1334444332 245555543
No 121
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.66 E-value=3.1 Score=44.20 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 300 aaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
.-+|-.|++.=++-.+.+++. +++|++|.+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~----------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTG---KNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK----------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 345667788888888898888 999999975 678888888864 232 46777653
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 379 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|.+.+.++.++.|+|+.
T Consensus 193 ------------------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 193 ------------------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred ------------------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcCC
Confidence 1347788888 799999999999999998883
No 122
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=84.21 E-value=1.7 Score=45.53 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 289 ~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+.=||-|.. |++.+++..+.+ .. .+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~~--------Gf~~~L~~~~~~-~~---~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDYI--------AIAKLLASYQVP-PD---LVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCHH--------HHHHHHHhcCCC-CC---CeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 445555654 477788766653 24 689999999999888777654 354 479999885
No 123
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.18 E-value=6.3 Score=41.92 Aligned_cols=134 Identities=20% Similarity=0.195 Sum_probs=87.6
Q ss_pred HHHHHHHHHhC--CC---eEEEeecCCCchHHHHHHHHh--hcCCccccCC--------chhHHHHHHHHHHHHHHhCCC
Q 007456 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (603)
Q Consensus 253 defv~av~~~~--P~---~~Iq~EDf~~~naf~iL~ryr--~~~~~FnDDi--------QGTaaV~lAgll~A~r~tg~~ 317 (603)
+||.+.+++.- |+ .++|+==...-+..++++.-. +.+=.||.-- .+-.-+|-+|++.=++-.+.+
T Consensus 75 ~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~i~ 154 (286)
T PRK14184 75 EELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERYGLS 154 (286)
T ss_pred HHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 57777787774 54 377764233333344444322 2222222221 233567888999999999998
Q ss_pred CCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCccc
Q 007456 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (603)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~ 396 (603)
++. +++|++|.+ ..|.-+|.||..... ..| ..+..++++.
T Consensus 155 l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~t---------------------------- 195 (286)
T PRK14184 155 PAG---KKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSRT---------------------------- 195 (286)
T ss_pred CCC---CEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCCc----------------------------
Confidence 888 999999985 578888887764110 012 2466666531
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
.+|.+.++. +|++|++.+.|+.+++++|+
T Consensus 196 -~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 -PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 248888888 79999999999999999984
No 124
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=84.12 E-value=1.5 Score=48.88 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=76.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHh-cCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccc-cCCcCCcccCCCH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASL 400 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~-~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~-~~~~~~~~~~~~L 400 (603)
.||+|+||||+ -+-.|+..+.+. ..++ -+.|+|+|-+. +| +-+...-+.+++. ..++. .....++
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~-v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIK-FVYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeE-EEEECCH
Confidence 48999999996 454555555523 2444 26899999763 22 1112211222221 11211 1234679
Q ss_pred HHHhcccCCcEEE---------------------eec-----CCCCC--------CCHHHHHHhhhcCCCCCeEEecCCC
Q 007456 401 LEVVRKVKPHVLL---------------------GLS-----GVGGV--------FNEEVLKAMRESDSVKPAIFAMSNP 446 (603)
Q Consensus 401 ~e~V~~vkptvLI---------------------G~S-----~~~g~--------Ft~evv~~M~~~~~erPIIF~LSNP 446 (603)
.||++. +|.+| |+- +.+|. .-.++++.|. ++|+..+++-.|||
T Consensus 69 ~eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~-~~~pda~lin~tNP 145 (437)
T cd05298 69 EEAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIE-KYSPDAWILNYSNP 145 (437)
T ss_pred HHHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHH-HHCCCeEEEEecCc
Confidence 999988 67766 221 22232 2357888885 49999999999999
Q ss_pred CCccCCCHHHHhc-ccCCcEEEEcCCCCC
Q 007456 447 TMNAECTAADAFK-HAGENIVFASGSPFE 474 (603)
Q Consensus 447 t~~aE~tpeda~~-wt~Grai~AtGSPf~ 474 (603)
.. .+|- -+++ ++.-|+|=-+-+|+.
T Consensus 146 ~~--~vt~-~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 146 AA--IVAE-ALRRLFPNARILNICDMPIA 171 (437)
T ss_pred HH--HHHH-HHHHHCCCCCEEEECCcHHH
Confidence 96 3332 2332 345566655655554
No 125
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.08 E-value=3.2 Score=44.08 Aligned_cols=131 Identities=14% Similarity=0.232 Sum_probs=85.9
Q ss_pred HHHHHHHHHhC--CC---eEEEeecCCCchHHHHHHHHh--hcCCccccC--------CchhHHHHHHHHHHHHHHhCCC
Q 007456 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDD--------IQGTAGVALAGLLGTVRAQGLS 317 (603)
Q Consensus 253 defv~av~~~~--P~---~~Iq~EDf~~~naf~iL~ryr--~~~~~FnDD--------iQGTaaV~lAgll~A~r~tg~~ 317 (603)
+||++.+.++- |+ .++|+==.+.-+..++++... +.+=+||.. -.+-.-+|-+|++.=++-.|.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 154 (284)
T PRK14170 75 EKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQ 154 (284)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56777777664 54 377764333333334444332 112122211 1234567788888888999998
Q ss_pred CCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCccc
Q 007456 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (603)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~ 396 (603)
++. +++|++|.+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 155 l~G---k~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~----------------------------- 190 (284)
T PRK14170 155 IEG---KRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR----------------------------- 190 (284)
T ss_pred CCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------------------------
Confidence 888 999999986 578888887754 232 46666542
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.++.|+.++||.
T Consensus 191 T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 191 TKDLPQVAKE--ADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1347788888 799999999999999998883
No 126
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.89 E-value=0.95 Score=44.93 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=31.7
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
++|++ .||+++|+|..|.-+|+.|+.+ |. ++|+++|.+
T Consensus 17 ~kl~~---~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLN---SHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcC---CCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 34556 9999999999999999988775 44 689999997
No 127
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.87 E-value=0.92 Score=45.57 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|+. .||+++|+|..|..||..|+.+ |+ .+|+++|.+
T Consensus 24 ~~L~~---~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKK---AKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhC---CCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 34556 9999999999999999999765 55 589999997
No 128
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=83.82 E-value=0.44 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.2
Q ss_pred CceEEEeCcchhHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~ 344 (603)
+.||||+|||.||++.|.-|++
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred CceEEEECCchHHHHHHHHHHH
Confidence 3899999999999999999984
No 129
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.61 E-value=2.5 Score=43.80 Aligned_cols=105 Identities=20% Similarity=0.241 Sum_probs=57.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChh--hhccccccCCcC-CcccCCCH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA--AAPFAKDPGDFM-GLREGASL 400 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~--k~~fa~~~~~~~-~~~~~~~L 400 (603)
.||.|+|+|..|..+|..|... |. .++++|+..-..+ .+... ...+... ..+. +.....++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~-----g~-------~V~~~~r~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 65 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN-----GH-------DVTLWARDPEQAA---EINADRENPRYLPG-IKLPDNLRATTDL 65 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECCHHHHH---HHHHcCcccccCCC-CcCCCCeEEeCCH
Confidence 3799999999999999998763 32 5777887531110 00000 0000000 0000 00112467
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
.|+++. +|++| ++. +....+++++.+.....+.-+|..++|-..
T Consensus 66 ~~~~~~--~D~vi-~~v-~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 66 AEALAD--ADLIL-VAV-PSQALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHHhC--CCEEE-EeC-CHHHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 778766 67766 332 223668888877542345668888887443
No 130
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.60 E-value=0.97 Score=45.49 Aligned_cols=106 Identities=22% Similarity=0.307 Sum_probs=59.5
Q ss_pred CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCccc
Q 007456 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (603)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~ 396 (603)
+|++ .||+|+|+|+.|.-+|+.|+.+ |. ++|.++|.+= +.. .+|..+ .|... .++ +...
T Consensus 18 ~L~~---~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~--sNL~Rq--~l~~~-~di-G~~K 76 (228)
T cd00757 18 KLKN---ARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VEL--SNLQRQ--ILHTE-ADV-GQPK 76 (228)
T ss_pred HHhC---CcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcC--cccccc--cccCh-hhC-CChH
Confidence 4555 9999999999999999999776 44 6899999983 222 234432 12111 011 1111
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCC
Q 007456 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTM 448 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF-~LSNPt~ 448 (603)
...+.+.++...|++=|=.. ..-++++-+...-+ +--+|+ ++-||..
T Consensus 77 a~~~~~~l~~~np~~~i~~~--~~~i~~~~~~~~~~---~~DvVi~~~d~~~~ 124 (228)
T cd00757 77 AEAAAERLRAINPDVEIEAY--NERLDAENAEELIA---GYDLVLDCTDNFAT 124 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEe--cceeCHHHHHHHHh---CCCEEEEcCCCHHH
Confidence 23466777777776544222 23345544443322 223444 5556644
No 131
>PRK07574 formate dehydrogenase; Provisional
Probab=83.51 E-value=20 Score=39.59 Aligned_cols=200 Identities=15% Similarity=0.127 Sum_probs=113.8
Q ss_pred HhCCCe-EEEeecCCCchHHHHHHHHh-hcCCccccCC---chhHHHHHHHHHHHHHHh---------C--------CCC
Q 007456 261 ARWPKA-IVQFEDFQMKWAFETLERYR-KRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G--------LSL 318 (603)
Q Consensus 261 ~~~P~~-~Iq~EDf~~~naf~iL~ryr-~~~~~FnDDi---QGTaaV~lAgll~A~r~t---------g--------~~l 318 (603)
...|+. +|+.-=.+..| ..+ +..+ ..+.+.|-.- +.+|=-+++-+|+.+|-. | ...
T Consensus 110 ~~~p~LK~I~~~g~G~D~-id~-~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~ 187 (385)
T PRK07574 110 AKAPNLKLAITAGIGSDH-VDL-QAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRS 187 (385)
T ss_pred hhCCCCcEEEECCccccc-ccH-HHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccc
Confidence 346776 77765555554 222 2223 3477777533 234444788888877621 1 012
Q ss_pred CCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCC
Q 007456 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (603)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~ 398 (603)
.+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+...-. +..+.+ . . ....
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~~-------~~~~~~--g---~---~~~~ 240 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLPE-------EVEQEL--G---L---TYHV 240 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCch-------hhHhhc--C---c---eecC
Confidence 345669999999999999999988764 43 588888754210 000011 0 0 1135
Q ss_pred CHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCC
Q 007456 399 SLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474 (603)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~ 474 (603)
+|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=..--|.--.+|++ .|+.-.|..-=|.
T Consensus 241 ~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaLDV~~ 312 (385)
T PRK07574 241 SFDSLVSV--CDVVTIHCPLHPETEHLFDADVLSRMK----RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAGDVWF 312 (385)
T ss_pred CHHHHhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC----CCcEEEECCCCchhhHHHHHHHHH--hCCccEEEEecCC
Confidence 79999988 798763321 13789999999994 567888777644322333334444 5666555443232
Q ss_pred ceecCCCeeeccccccccccchhhH
Q 007456 475 NVDLGNGKIGHVNQANNMYLFPGIG 499 (603)
Q Consensus 475 pv~~~~G~~~~p~Q~NN~~iFPGig 499 (603)
+-..+.... --+-.|+.+-|=++
T Consensus 313 ~EPlp~d~p--L~~~pNvilTPHia 335 (385)
T PRK07574 313 PQPAPADHP--WRTMPRNGMTPHIS 335 (385)
T ss_pred CCCCCCCCh--HHhCCCeEECCccc
Confidence 211110110 11334788888666
No 132
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.50 E-value=3.8 Score=46.51 Aligned_cols=105 Identities=12% Similarity=0.003 Sum_probs=58.1
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc--------cCCCHHHHhcccCCcEEE-EcCCCCCc
Q 007456 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN--------AECTAADAFKHAGENIVF-ASGSPFEN 475 (603)
Q Consensus 405 ~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~--------aE~tpeda~~wt~Grai~-AtGSPf~p 475 (603)
+..+|+++|..++..=.. .++-+.+. .-+|=+-+=+-||-+. .+.|.+++++... .++ .-| -.|
T Consensus 108 ~~~~~~~IlasnTStl~i-~~iA~~~~--~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~~--~l~~~lg--k~p 180 (503)
T TIGR02279 108 ELCPADTIIASNTSSLSI-TAIAAGLA--RPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLY--ETALAWG--KQP 180 (503)
T ss_pred hhCCCCeEEEECCCCCCH-HHHHHhcC--cccceEEEeccCccccCceEEEeCCCCCCHHHHHHHH--HHHHHcC--Cee
Confidence 346788888655422122 23444442 3345566667776541 2223333332110 000 001 122
Q ss_pred eecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 007456 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (603)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 520 (603)
|.. | ..||..+|-+.+|.+.-+..+...--++.+.+.++.+
T Consensus 181 v~v--~--d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 181 VHC--H--STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred eEe--C--CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 2 3578899999999999998888877788888877765
No 133
>PRK08223 hypothetical protein; Validated
Probab=83.42 E-value=0.59 Score=49.54 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=44.0
Q ss_pred HHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhc
Q 007456 279 FETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (603)
Q Consensus 279 f~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~ 358 (603)
|..-++|..++..|..+-| .+|++ .||+|+|+|..|.-+|..|+.+.+
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~---s~VlIvG~GGLGs~va~~LA~aGV----------- 51 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRN---SRVAIAGLGGVGGIHLLTLARLGI----------- 51 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhc---CCEEEECCCHHHHHHHHHHHHhCC-----------
Confidence 5566777766655544433 44556 999999999999999999888754
Q ss_pred CeEEEEecCC
Q 007456 359 NKFFLLDKDG 368 (603)
Q Consensus 359 ~~i~lvD~~G 368 (603)
.+|.++|.+=
T Consensus 52 G~i~lvD~D~ 61 (287)
T PRK08223 52 GKFTIADFDV 61 (287)
T ss_pred CeEEEEeCCC
Confidence 6899999883
No 134
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=83.30 E-value=24 Score=37.56 Aligned_cols=147 Identities=17% Similarity=0.227 Sum_probs=95.1
Q ss_pred HhCCCe-EEEeecCCCchHHHHHHHHhhcCCccccC---CchhHHHHHHHHHHHHHHh---------C----C-------
Q 007456 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------G----L------- 316 (603)
Q Consensus 261 ~~~P~~-~Iq~EDf~~~naf~iL~ryr~~~~~FnDD---iQGTaaV~lAgll~A~r~t---------g----~------- 316 (603)
...|+. .|+.-=.+..| ..+-.--+..+.+.|-- -..+|=-+++-+|+..|-. | .
T Consensus 59 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 137 (311)
T PRK08410 59 SQLPNLKLICITATGTNN-VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHIS 137 (311)
T ss_pred hhCCCCeEEEEccccccc-ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccC
Confidence 345776 77776666655 33322223447777742 2446777788888888732 1 0
Q ss_pred -CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 -~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
+..+|.++++.|+|-|..|-.+|+++... |+ +|+.+|+.+- .. ...|
T Consensus 138 ~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-----gm-------~V~~~d~~~~---~~------~~~~----------- 185 (311)
T PRK08410 138 RPLGEIKGKKWGIIGLGTIGKRVAKIAQAF-----GA-------KVVYYSTSGK---NK------NEEY----------- 185 (311)
T ss_pred ccccccCCCEEEEECCCHHHHHHHHHHhhc-----CC-------EEEEECCCcc---cc------ccCc-----------
Confidence 12356679999999999999999988654 44 6888888531 00 0001
Q ss_pred cCCCHHHHhcccCCcEEEee----cCCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007456 396 EGASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~----S~~~g~Ft~evv~~M~~~~~erPIIF~LSNP 446 (603)
...+|.|+++. .|+++=. ...-+.|+++.++.|. +..++.=.|.=
T Consensus 186 ~~~~l~ell~~--sDvv~lh~Plt~~T~~li~~~~~~~Mk----~~a~lIN~aRG 234 (311)
T PRK08410 186 ERVSLEELLKT--SDIISIHAPLNEKTKNLIAYKELKLLK----DGAILINVGRG 234 (311)
T ss_pred eeecHHHHhhc--CCEEEEeCCCCchhhcccCHHHHHhCC----CCeEEEECCCc
Confidence 12479999988 6887632 2224899999999993 57777766653
No 135
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.01 E-value=1.1 Score=48.35 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=32.9
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.+|++ .||+|+|+|..|..+|+.|+.+.+ ++|.++|.+=
T Consensus 20 ~~L~~---~~VlIiG~GglGs~va~~La~aGv-----------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIRE---KHVLIVGAGALGAANAEALVRAGI-----------GKLTIADRDY 58 (338)
T ss_pred HhhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCc
Confidence 45566 999999999999999999987644 5899999983
No 136
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.92 E-value=3.9 Score=43.39 Aligned_cols=131 Identities=16% Similarity=0.253 Sum_probs=87.5
Q ss_pred HHHHHHHHHhC--CCe---EEEee---cCCCchHHHHHHHHhhc--C------CccccCCchhHHHHHHHHHHHHHHhCC
Q 007456 253 DEFMEAVHARW--PKA---IVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (603)
Q Consensus 253 defv~av~~~~--P~~---~Iq~E---Df~~~naf~iL~ryr~~--~------~~FnDDiQGTaaV~lAgll~A~r~tg~ 316 (603)
+||++.++++- |++ ++|+= .+.....++.++-.+|- + ..|.++..+-.-+|-+|++.=++-.+.
T Consensus 74 ~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i 153 (282)
T PRK14166 74 NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777663 543 67754 44333333333332221 1 223332234567788889999999999
Q ss_pred CCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
+++. +++|++|-+ ..|.-+|.||.. .|. .+.+++|+ |
T Consensus 154 ~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~---T------------------------ 191 (282)
T PRK14166 154 DLEG---KDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK---T------------------------ 191 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---C------------------------
Confidence 8888 999999976 578888888754 232 46666553 1
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
.+|.+.+++ +|++|-+.+.|+.|++++|+.
T Consensus 192 --~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 192 --KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred --CCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 247788888 799999999999999998873
No 137
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.85 E-value=1.1 Score=45.95 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=60.2
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
++|++ .||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ .. .+|..+ ..|... ++ +.+
T Consensus 20 ~~L~~---~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~--sNL~RQ-~l~~~~--di-G~~ 78 (240)
T TIGR02355 20 EALKA---SRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SL--SNLQRQ-VLHSDA--NI-GQP 78 (240)
T ss_pred HHHhC---CcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-cc--cCcccc-eeeeHh--hC-CCc
Confidence 34556 9999999999999999999775 54 68999999822 22 234422 111111 11 111
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCC
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTM 448 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF-~LSNPt~ 448 (603)
....+.+.++...|++-|-.- ...++++-+...-+ +--+|+ +.-||..
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~--~~~i~~~~~~~~~~---~~DlVvd~~D~~~~ 127 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPI--NAKLDDAELAALIA---EHDIVVDCTDNVEV 127 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEE--eccCCHHHHHHHhh---cCCEEEEcCCCHHH
Confidence 123456666666777665443 23455544433312 233444 5566654
No 138
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.76 E-value=0.92 Score=49.44 Aligned_cols=124 Identities=20% Similarity=0.338 Sum_probs=71.1
Q ss_pred HHHHhhcCCc--cccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcC
Q 007456 282 LERYRKRFCM--FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARN 359 (603)
Q Consensus 282 L~ryr~~~~~--FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~ 359 (603)
++||..++.+ |.-+-| ++|++ .||+|+|+|..|.-+|..|+.+ |+ +
T Consensus 19 ~~ry~Rqi~l~~~g~~~q------------------~~l~~---~~VliiG~GglG~~v~~~La~~-----Gv------g 66 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQ------------------ERLHN---ARVLVIGAGGLGCPAMQSLASA-----GV------G 66 (370)
T ss_pred HHHhhcccchhhhCHHHH------------------HHhcC---CcEEEECCCHHHHHHHHHHHHc-----CC------C
Confidence 5789888655 543332 55667 9999999999999999998876 44 6
Q ss_pred eEEEEecCCcccCC--CC------CCChhhhcccc----c-cCC--cCCcc---cCCCHHHHhcccCCcEEEeecCCCCC
Q 007456 360 KFFLLDKDGLITKE--RK------NLDPAAAPFAK----D-PGD--FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGV 421 (603)
Q Consensus 360 ~i~lvD~~GLv~~~--r~------~l~~~k~~fa~----~-~~~--~~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~ 421 (603)
+|.++|.+=+=..+ |. ++-..|..-++ . .+. +.... ...++.+.+++ .|++|.++.. .
T Consensus 67 ~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~ 142 (370)
T PRK05600 67 TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--F 142 (370)
T ss_pred EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--H
Confidence 89999998331111 11 11122221111 0 011 10000 11245566666 6888877643 2
Q ss_pred CCHHHHHHhhhcCCCCCeEEe
Q 007456 422 FNEEVLKAMRESDSVKPAIFA 442 (603)
Q Consensus 422 Ft~evv~~M~~~~~erPIIF~ 442 (603)
=++-+|..++. ....|.|++
T Consensus 143 ~~r~~in~~~~-~~~iP~v~~ 162 (370)
T PRK05600 143 ATKFLVADAAE-ITGTPLVWG 162 (370)
T ss_pred HHHHHHHHHHH-HcCCCEEEE
Confidence 23455666654 445788876
No 139
>PLN02602 lactate dehydrogenase
Probab=82.60 E-value=4 Score=44.35 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=77.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||.|+|||..|..+|-.|+. .|+. ..|.|+|..-=..++. -+|.+.. +|... ... ....+.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i---~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDLA-----DELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKI---LASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEE---EeCCCHHH
Confidence 399999999999999987764 3553 4799999742111111 1344433 23221 111 11134544
Q ss_pred HhcccCCcEEEeecCC---CCCCCH------------HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcE
Q 007456 403 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~Ft~------------evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~--Gra 465 (603)
+++ .|++|=+.+. +| -|+ ++++.|.+ ++..-+|+-.|||.. ....-+++++. =+-
T Consensus 103 -~~d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~-~~p~~ivivvtNPvd---v~t~~~~k~sg~p~~r 174 (350)
T PLN02602 103 -TAG--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAK-YSPDTILLIVSNPVD---VLTYVAWKLSGFPANR 174 (350)
T ss_pred -hCC--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCchH---HHHHHHHHHhCCCHHH
Confidence 666 6888844443 34 233 67777754 899999999999995 66666777662 144
Q ss_pred EEEcCCCC
Q 007456 466 VFASGSPF 473 (603)
Q Consensus 466 i~AtGSPf 473 (603)
+|.+|.-.
T Consensus 175 viG~gt~L 182 (350)
T PLN02602 175 VIGSGTNL 182 (350)
T ss_pred EEeecchH
Confidence 66777444
No 140
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.59 E-value=3.1 Score=44.35 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeC-cchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~G-AGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-.|++.=++-.+.+++. ++|+|+| .|..|..+|.+|... |. .+++++++ .
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~G---k~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T-- 192 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSG---LNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------T-- 192 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCC---CEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------C--
Confidence 3466778888888888888888 9999999 999999999999753 43 46655432 0
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~ev 426 (603)
.+|.|++++ .|++|-+-+.++.+++++
T Consensus 193 --------------------~~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 193 --------------------RDLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred --------------------CCHHHHHhc--CCEEEEecCChhhcchhe
Confidence 137778877 799998888888888766
No 141
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.49 E-value=0.59 Score=52.95 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=26.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~ 360 (603)
-+|+|+|||-||+..|++|.+... .+..-|||.|
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 689999999999999999999754 1334455544
No 142
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.33 E-value=4.3 Score=43.33 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+-.-+|-.|++.=++..+.+++. +++|++|.+ ..|.-+|.||.. .| ..+.+++|+
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~--------- 193 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSG---SDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA--------- 193 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC---------
Confidence 34567888889999999998888 999999985 578888888764 23 246666653
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.|+.++.++|+.
T Consensus 194 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 194 --------------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1247777877 799999999999999999883
No 143
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=81.83 E-value=1.4 Score=41.68 Aligned_cols=31 Identities=29% Similarity=0.643 Sum_probs=25.2
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|||+|+|.||+..|..+... | .+++++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-----~-------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-----G-------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-----C-------CeEEEEecc
Confidence 699999999999999999832 3 378888654
No 144
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=81.81 E-value=1.1 Score=50.90 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.9
Q ss_pred CCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCccc
Q 007456 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (603)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~ 371 (603)
.-+.+-|.+++|||+-|++||+-|+...+ ++|.+||.--.-+
T Consensus 336 d~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----------RhITFvDn~kVsy 377 (669)
T KOG2337|consen 336 DIISQTKCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDNGKVSY 377 (669)
T ss_pred hhhhcceeEEecCcccchHHHHHHHhhcc-----------ceEEEEecCeeec
Confidence 33457999999999999999999999977 6899999754333
No 145
>PRK06436 glycerate dehydrogenase; Provisional
Probab=81.78 E-value=10 Score=40.33 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCC
Q 007456 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
+|.++++.|+|-|..|..+|+++... |+ +++.+|+... . ... .. ...+
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~af-----G~-------~V~~~~r~~~--~--~~~--------~~--------~~~~ 166 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAF-----GM-------NIYAYTRSYV--N--DGI--------SS--------IYME 166 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCCc--c--cCc--------cc--------ccCC
Confidence 45559999999999999999865432 44 6888887521 0 000 00 1246
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007456 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~A 468 (603)
|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|.=..--|-.-.+|++ +|+...|
T Consensus 167 l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk----~ga~lIN~sRG~~vd~~aL~~aL~--~g~i~~a 231 (303)
T PRK06436 167 PEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR----KGLAIINVARADVVDKNDMLNFLR--NHNDKYY 231 (303)
T ss_pred HHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCceEE
Confidence 8998877 788773321 23789999999993 578888888755433333334444 4554433
No 146
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=81.74 E-value=10 Score=41.34 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=73.0
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEE-EEecCccccccCCCCCCcccccchhHHHHH-----HhcCCCCCc-eeeEEee
Q 007456 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVYV-----AAAGINPQR-ILPVMLD 221 (603)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~GmgI~iGKl~LY~-----a~gGI~P~~-~lPV~LD 221 (603)
|. ++..|-..+.++|+.. +++++ +++|+ .+--+-..|.+.+-+..+....+. .=-||..-. -+|+
T Consensus 162 G~-~~~~d~~el~~lL~~~---Gi~v~~~~~d~-~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~--- 233 (396)
T cd01979 162 GS-LPDIVEDQLRRELEQL---GIPVVGFLPPR-RYTDLPVIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI--- 233 (396)
T ss_pred Ee-CCcchHHHHHHHHHHc---CCeEEEEeCCC-ChHHhhccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc---
Confidence 55 3556667788888864 56665 77874 466555555554444433322221 223554222 1232
Q ss_pred ccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhHH
Q 007456 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (603)
Q Consensus 222 vGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTaa 301 (603)
|- +-.++|+..+.+.+-. .-+.+++.|.+
T Consensus 234 -G~-------------------------~~t~~~l~~la~~~g~------------~~~~i~~e~~~------------- 262 (396)
T cd01979 234 -GP-------------------------DGTRAWLEAICSAFGI------------FPSVLAEREAR------------- 262 (396)
T ss_pred -Ch-------------------------HHHHHHHHHHHHHhCC------------ChhHHHHHHHH-------------
Confidence 21 1267888888777641 01123333332
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHH
Q 007456 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 302 V~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~ 345 (603)
+.-++.-....|.. .|++|+|-+.-..++++.+.+.
T Consensus 263 -----~~~~l~~~~~~l~G---krv~i~g~~~~~~~la~~L~el 298 (396)
T cd01979 263 -----AWRALEPYLDLLRG---KSIFFMGDNLLEIPLARFLTRC 298 (396)
T ss_pred -----HHHHHHHHHHhhcC---CEEEEECCchHHHHHHHHHHHC
Confidence 33344444455556 8999999988888888888763
No 147
>PRK13243 glyoxylate reductase; Reviewed
Probab=81.65 E-value=35 Score=36.64 Aligned_cols=198 Identities=23% Similarity=0.187 Sum_probs=112.7
Q ss_pred hCCCe-EEEeecCCCchHHHHHHHHhhcCCccccCC---chhHHHHHHHHHHHHHHh---------CC------------
Q 007456 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL------------ 316 (603)
Q Consensus 262 ~~P~~-~Iq~EDf~~~naf~iL~ryr~~~~~FnDDi---QGTaaV~lAgll~A~r~t---------g~------------ 316 (603)
..|+. .|+.-=.+..| ..+-.--+..+++.|--- +..|=-+++.+|+..|-. |.
T Consensus 64 ~~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~ 142 (333)
T PRK13243 64 AAPRLRIVANYAVGYDN-IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM 142 (333)
T ss_pred hCCCCeEEEecCccccc-cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc
Confidence 45776 77766666665 333222234577777422 345556788888887742 11
Q ss_pred -CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 -~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
.-.+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. + . .. ...+. .
T Consensus 143 ~~g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~---~--~-~~--~~~~~---------~ 193 (333)
T PRK13243 143 FLGYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR---K--P-EA--EKELG---------A 193 (333)
T ss_pred ccccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC---C--h-hh--HHHcC---------C
Confidence 01356669999999999999999988654 43 588888742 1 1 00 01110 0
Q ss_pred cCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCC
Q 007456 396 EGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGS 471 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGS 471 (603)
...+|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=..--|-.-.+|++ .|+.-.|.=-
T Consensus 194 ~~~~l~ell~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk----~ga~lIN~aRg~~vd~~aL~~aL~--~g~i~gAaLD 265 (333)
T PRK13243 194 EYRPLEELLRE--SDFVSLHVPLTKETYHMINEERLKLMK----PTAILVNTARGKVVDTKALVKALK--EGWIAGAGLD 265 (333)
T ss_pred EecCHHHHHhh--CCEEEEeCCCChHHhhccCHHHHhcCC----CCeEEEECcCchhcCHHHHHHHHH--cCCeEEEEec
Confidence 12479999887 688774321 13789999999993 567887777644322333333333 5665444211
Q ss_pred CCCceecCCCeeeccccccccccchhhHH
Q 007456 472 PFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (603)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (603)
=|++-..+ +. .--+..|+.+-|=+|-
T Consensus 266 V~~~EP~~-~~--pL~~~~nvilTPHia~ 291 (333)
T PRK13243 266 VFEEEPYY-NE--ELFSLKNVVLAPHIGS 291 (333)
T ss_pred cCCCCCCC-Cc--hhhcCCCEEECCcCCc
Confidence 12111111 11 1123457888887764
No 148
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=81.52 E-value=12 Score=40.06 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHHh---------C-----C--CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007456 298 GTAGVALAGLLGTVRAQ---------G-----L--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (603)
Q Consensus 298 GTaaV~lAgll~A~r~t---------g-----~--~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i 361 (603)
.+|=-+++-+|+.+|-. | . .-.+|.+++|.|+|.|..|..+|+.+... |. ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EE
Confidence 45556677777777631 1 0 01245569999999999999999988653 43 58
Q ss_pred EEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEee-cCCC---CCCCHHHHHHhhhcCCCC
Q 007456 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-SGVG---GVFNEEVLKAMRESDSVK 437 (603)
Q Consensus 362 ~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-S~~~---g~Ft~evv~~M~~~~~er 437 (603)
+.+|+.. . ....+.+ ...+|.|+++. .|+++=. ...+ +.|.++++..|. +.
T Consensus 173 ~~~d~~~----~------~~~~~~~---------~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~~mk----~g 227 (330)
T PRK12480 173 TAYDAYP----N------KDLDFLT---------YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFDHVK----KG 227 (330)
T ss_pred EEEeCCh----h------Hhhhhhh---------ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC----CC
Confidence 8888642 0 0001111 12468899887 6876632 2221 578888888883 46
Q ss_pred CeEEecCCCC
Q 007456 438 PAIFAMSNPT 447 (603)
Q Consensus 438 PIIF~LSNPt 447 (603)
.++.-.|.=.
T Consensus 228 avlIN~aRG~ 237 (330)
T PRK12480 228 AILVNAARGA 237 (330)
T ss_pred cEEEEcCCcc
Confidence 6777666533
No 149
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.34 E-value=1 Score=48.61 Aligned_cols=38 Identities=37% Similarity=0.521 Sum_probs=32.1
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
++|++ .||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~---~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFD---AKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhC---CeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 44566 9999999999999999988765 54 689999998
No 150
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.27 E-value=2.5 Score=47.49 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCeEEEeecCCCchHHHHHHHHhhc-CC--ccccCCchhHHHHHHHHHHHHHHh--------CCCCCCCC
Q 007456 254 EFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQ--------GLSLTDFA 322 (603)
Q Consensus 254 efv~av~~~~P~~~Iq~EDf~~~naf~iL~ryr~~-~~--~FnDDiQGTaaV~lAgll~A~r~t--------g~~l~dl~ 322 (603)
+.++-+....|+.-..+ +....-.++.++|.-. +| .+|++..+.|....+-+++.++.. ...-.+
T Consensus 137 ~~~~~~a~~~p~i~~~~--id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 212 (515)
T TIGR03140 137 QALNQMALLNPNISHTM--IDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP-- 212 (515)
T ss_pred HHHHHHHHhCCCceEEE--EEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC--
Confidence 33344555567654443 5556677888999765 33 348888888888888888877644 112334
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
.++||+|||+||+..|..+.. .|+ ++.++|+
T Consensus 213 -~dVvIIGgGpAGl~AA~~la~-----~G~-------~v~li~~ 243 (515)
T TIGR03140 213 -YDVLVVGGGPAGAAAAIYAAR-----KGL-------RTAMVAE 243 (515)
T ss_pred -CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEec
Confidence 789999999999999887655 354 5666764
No 151
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.26 E-value=1.3 Score=43.88 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=48.1
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccc-cCCcCCc
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGL 394 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~-~~~~~~~ 394 (603)
++|++ .||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+-+ .. .+|..+ .|.+. ..+ -+.
T Consensus 15 ~~L~~---s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~v-e~--snl~rq--~~~~~~~~~-iG~ 74 (198)
T cd01485 15 NKLRS---AKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRLV-ST--EDLGSN--FFLDAEVSN-SGM 74 (198)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCcC-Ch--hcCccc--Eecccchhh-cCc
Confidence 34555 9999999999999999999776 44 68999999832 22 234321 22221 011 011
Q ss_pred ccCCCHHHHhcccCCcEEEe
Q 007456 395 REGASLLEVVRKVKPHVLLG 414 (603)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG 414 (603)
+....+.+.++...|++=|=
T Consensus 75 ~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 75 NRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred hHHHHHHHHHHHHCCCCEEE
Confidence 11234666677777777543
No 152
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.85 E-value=1.5 Score=40.59 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=64.2
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
||+++|+|.-|..+|+.|+.. |. ++|.++|.+-+=.. +|..+ .|.... +. +.+....+.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v~~~---nl~r~--~~~~~~-~v-G~~Ka~~~~~~l 62 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTVELS---NLNRQ--FLARQA-DI-GKPKAEVAARRL 62 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCcCcc---hhhcc--ccCChh-HC-CChHHHHHHHHH
Confidence 689999999999999999775 44 68999999833222 33322 222111 10 111223467777
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcC
Q 007456 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG 470 (603)
Q Consensus 405 ~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtG 470 (603)
+...|.+=|-... ..++++..... ..+--||+..+... .+...-.++. +..|...+.+|
T Consensus 63 ~~~~p~v~i~~~~--~~~~~~~~~~~---~~~~diVi~~~d~~-~~~~~l~~~~-~~~~i~~i~~~ 121 (143)
T cd01483 63 NELNPGVNVTAVP--EGISEDNLDDF---LDGVDLVIDAIDNI-AVRRALNRAC-KELGIPVIDAG 121 (143)
T ss_pred HHHCCCcEEEEEe--eecChhhHHHH---hcCCCEEEECCCCH-HHHHHHHHHH-HHcCCCEEEEc
Confidence 7777776554332 23444332222 23455777655442 2222222332 23455566555
No 153
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.82 E-value=5 Score=42.72 Aligned_cols=131 Identities=13% Similarity=0.226 Sum_probs=87.3
Q ss_pred HHHHHHHHHhC--CCe---EEEee---cCCCchHHHHHHHHhhc--C------CccccCCchhHHHHHHHHHHHHHHhCC
Q 007456 253 DEFMEAVHARW--PKA---IVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (603)
Q Consensus 253 defv~av~~~~--P~~---~Iq~E---Df~~~naf~iL~ryr~~--~------~~FnDDiQGTaaV~lAgll~A~r~tg~ 316 (603)
+|+++.++++- |++ ++|+= .+.....++.++-.+|- + ..|..+-.+-.-+|-+|++.=++..+.
T Consensus 76 ~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i 155 (288)
T PRK14171 76 NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEP 155 (288)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777664 543 66754 33333333333322221 1 223222244567788889999999999
Q ss_pred CCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
+++. .++|++|.+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 156 ~l~G---K~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~---------------------------- 192 (288)
T PRK14171 156 NLTG---KNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK---------------------------- 192 (288)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 8888 999999975 578888888754 232 46666553
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.++.+++++||.
T Consensus 193 -T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 193 -THNLSSITSK--ADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred -CCCHHHHHhh--CCEEEEccCCCCccCHHHcCC
Confidence 1247888888 799999999999999999883
No 154
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=80.67 E-value=5 Score=42.90 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+-.-+|-+|++.=++-.|.+++. +++||+|-+ ..|.-+|.||.. .| ..+.+++|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~G---k~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~--------- 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKG---KKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR--------- 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC---------
Confidence 44567778888888989998888 999999976 568888887754 23 247777653
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.|.+++ .|++|-..+.++.|+.|+||.
T Consensus 201 --------------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 201 --------------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred --------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1247888888 799999999999999999984
No 155
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.66 E-value=5.2 Score=42.45 Aligned_cols=86 Identities=14% Similarity=0.286 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+-.-+|-.|++.=++-.+.+++. +++|++|.+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~--------- 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAG---KRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK--------- 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC---------
Confidence 34567788888888999998888 999999975 578888888764 232 35555443
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.|+.|+.|+||.
T Consensus 190 --------------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 190 --------------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1347788888 799999999999999998883
No 156
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.59 E-value=5.1 Score=42.55 Aligned_cols=87 Identities=16% Similarity=0.311 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-.|++.-++-.|.+++. +++|++|.+ ..|.-+|.||..- ..+. .+.++.|+
T Consensus 137 ~~PcTp~av~~ll~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~~---~~~a-------tVtvchs~---------- 193 (284)
T PRK14193 137 PLPCTPRGIVHLLRRYDVELAG---AHVVVIGRGVTVGRPIGLLLTRR---SENA-------TVTLCHTG---------- 193 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHhhc---cCCC-------EEEEeCCC----------
Confidence 3467888899999999998888 999999975 6788888888541 0222 35666552
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-+.+.|+.++.|+|+.
T Consensus 194 -------------------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 194 -------------------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred -------------------CCCHHHHHHh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888888 799999999999999998883
No 157
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.34 E-value=1.6 Score=42.50 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=27.9
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
||+++|+|..|..||+.|+.+ |. ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999998775 44 579999997
No 158
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.33 E-value=1.6 Score=44.70 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=32.4
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
++|++ .||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~---~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKA---ARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcC---CeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 35666 9999999999999999999776 44 589999998
No 159
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.18 E-value=11 Score=40.39 Aligned_cols=104 Identities=23% Similarity=0.258 Sum_probs=65.9
Q ss_pred eEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007456 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
||.|+|| |..|..+|-.|+. .|+. ..+.|+|.+ + .++. -+|.+.. .+.+ ..+.....++.+
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~~-----~elvLiDi~-~-a~g~alDL~~~~-~~~~----i~~~~~~~~~y~ 64 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPLV-----SELALYDIV-N-TPGVAADLSHIN-TPAK----VTGYLGPEELKK 64 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEEecC-c-cceeehHhHhCC-Ccce----EEEecCCCchHH
Confidence 8999999 9999999877643 4553 579999998 3 2222 2455443 1111 100001134677
Q ss_pred HhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 403 VVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
.++. .|++|=+.+. +|- .-+++++.+.+ +++..+|+-.|||..
T Consensus 65 ~~~d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~-~~p~a~vivvtNPvD 121 (310)
T cd01337 65 ALKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAK-ACPKALILIISNPVN 121 (310)
T ss_pred hcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchh
Confidence 8888 6887745544 342 22456666654 899999999999984
No 160
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.13 E-value=2.8 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.||.|+|||+-|+++|..+.+.
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999998764
No 161
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=80.12 E-value=1.4 Score=51.53 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
|.+.||+|+|||.-|.-+|+.|+.+++ ++|.+||.+-+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GV-----------g~ItlVD~D~V 373 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGV-----------RHITFVDNGKV 373 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEE
Confidence 345999999999999999999988755 68999998744
No 162
>PRK05442 malate dehydrogenase; Provisional
Probab=80.07 E-value=6.6 Score=42.22 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=72.5
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc---ccCCCCCCChhhhccccccCCcCCcccCCC
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL---ITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL---v~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
-||.|+|| |..|..+|-.|+.... .+. .+. ..|.|+|.+.- +....-+|.+...+|.+.. . -..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~--~~~--~~~-~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~-----i~~~ 73 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDM--LGK--DQP-VILQLLEIPPALKALEGVVMELDDCAFPLLAGV-V-----ITDD 73 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhh--cCC--CCc-cEEEEEecCCcccccceeehhhhhhhhhhcCCc-E-----EecC
Confidence 58999998 9999999887765433 110 001 37999998532 1111124555543443321 1 1235
Q ss_pred HHHHhcccCCcEEEeecC---CCCC-----------CCHHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhccc
Q 007456 400 LLEVVRKVKPHVLLGLSG---VGGV-----------FNEEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHA 461 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~---~~g~-----------Ft~evv~~M~~~~~-erPIIF~LSNPt~~aE~tpeda~~wt 461 (603)
..|.+++ .|++|=+.+ .+|- .=+++++.+.+ ++ ...||+-.|||.. +...-+++++
T Consensus 74 ~y~~~~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~k~s 144 (326)
T PRK05442 74 PNVAFKD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE-VAARDVKVLVVGNPAN---TNALIAMKNA 144 (326)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEeCCchH---HHHHHHHHHc
Confidence 6677877 688773433 3441 12455666643 55 6999999999985 6666666665
No 163
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.07 E-value=5.4 Score=42.64 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+-.-+|-+|++.=++-.|.+++. ++++++|.+ ..|.-+|.||... |+. ....+.++.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~---~~atVtv~hs~--------- 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSG---AEVVVVGRSNIVGKPIANMMTQK-----GPG---ANATVTIVHTR--------- 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcccHHHHHHHHhc-----ccC---CCCEEEEecCC---------
Confidence 44567788888888999998888 999999975 5788888877542 211 00245555443
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-+.+.|+.++.++||.
T Consensus 199 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 199 --------------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1248888888 799999999999999999883
No 164
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=79.86 E-value=2.5 Score=44.22 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=70.6
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
|.|+|||..|.++|..++. .|+. .++++|.+==..+.. .++.+.. .+...... .....+. +++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l~------eV~L~Di~e~~~~g~~~dl~~~~-~~~~~~~~---I~~t~d~-~~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KELG------DVVLLDIVEGLPQGKALDISQAA-PILGSDTK---VTGTNDY-EDI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCCc------EEEEEeCCCcHHHHHHHHHHHhh-hhcCCCeE---EEEcCCH-HHh
Confidence 5799999999999887754 2441 599999861000000 0111110 00000000 0112454 457
Q ss_pred cccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCc---EEE
Q 007456 405 RKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGEN---IVF 467 (603)
Q Consensus 405 ~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Gr---ai~ 467 (603)
+. .|++|=+.+.| |- +-+++++.|.+ ++...+|+-.|||.. .....+.+++ |. -+|
T Consensus 65 ~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~-~~p~~~iIv~sNP~d---i~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 65 AG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKK-YAPNAIVIVVTNPLD---VMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred CC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCHHHEE
Confidence 66 68887333222 21 23477888854 888889999999996 5555666665 32 477
Q ss_pred EcCCCC
Q 007456 468 ASGSPF 473 (603)
Q Consensus 468 AtGSPf 473 (603)
++|+-.
T Consensus 138 Glgt~l 143 (300)
T cd01339 138 GMAGVL 143 (300)
T ss_pred EecchH
Confidence 888443
No 165
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=79.83 E-value=13 Score=39.96 Aligned_cols=98 Identities=28% Similarity=0.283 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHH------------------HhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007456 300 AGVALAGLLGTVR------------------AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (603)
Q Consensus 300 aaV~lAgll~A~r------------------~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i 361 (603)
|=-+++.+|+..| ..|..|.. +++-|+|.|..|..+|+.+... |+ ++
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~g---kTvGIiG~G~IG~~va~~l~af-----gm-------~v 168 (324)
T COG0111 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAG---KTVGIIGLGRIGRAVAKRLKAF-----GM-------KV 168 (324)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccC---CEEEEECCCHHHHHHHHHHHhC-----CC-------eE
Confidence 4446777777777 34444555 9999999999999999998776 44 68
Q ss_pred EEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHh
Q 007456 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAM 430 (603)
Q Consensus 362 ~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~M 430 (603)
..+|+. ..++ ...+.. .....+|.|.++. .|+|.-.- ..-|.++++-+..|
T Consensus 169 ~~~d~~----~~~~-----~~~~~~-------~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 169 IGYDPY----SPRE-----RAGVDG-------VVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred EEECCC----Cchh-----hhcccc-------ceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 888873 1110 000000 0123579999988 79888542 12388999999999
No 166
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=79.58 E-value=1 Score=49.18 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=32.2
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
++|++ .||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~---~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKN---ARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhc---CCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 45666 9999999999999999999876 44 589999987
No 167
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.55 E-value=12 Score=40.05 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=78.5
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc--cCC-CCCCChhhhccccccCCcCCcccCCC
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv--~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
-||+|.|| |..|..+|..|+.. |+-..+....++++|.+.-. .++ .-++.+...++..+. ....+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~------~~~~~ 71 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSV------VATTD 71 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCc------eecCC
Confidence 47999999 99999999887652 33100111379999986421 111 112332221221110 11357
Q ss_pred HHHHhcccCCcEEEeecCCCC--CCC------------HHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhcccCC-
Q 007456 400 LLEVVRKVKPHVLLGLSGVGG--VFN------------EEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHAGE- 463 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g--~Ft------------~evv~~M~~~~~-erPIIF~LSNPt~~aE~tpeda~~wt~G- 463 (603)
+.+++++ +|++|=+.+.+. -.| +++++.|.+ ++ ..-||+-.|||.. ....-+++++.|
T Consensus 72 ~~~~l~~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~~~~~ 145 (325)
T cd01336 72 PEEAFKD--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDK-YAKKNVKVLVVGNPAN---TNALILLKYAPSI 145 (325)
T ss_pred HHHHhCC--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEecCcHH---HHHHHHHHHcCCC
Confidence 8888987 798885555432 123 566677754 64 6889999999985 666666666421
Q ss_pred -cEEEEcCCCCCc
Q 007456 464 -NIVFASGSPFEN 475 (603)
Q Consensus 464 -rai~AtGSPf~p 475 (603)
+-.|.||+=.+.
T Consensus 146 ~~~~ig~gt~LDs 158 (325)
T cd01336 146 PKENFTALTRLDH 158 (325)
T ss_pred CHHHEEeeehHHH
Confidence 112566644443
No 168
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.43 E-value=1.6 Score=44.61 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=30.2
Q ss_pred CCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 349999999999999999998765 54 689999987
No 169
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.01 E-value=8.1 Score=40.03 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=26.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 7899999999999999988653 43 58888864
No 170
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=78.94 E-value=2.7 Score=45.52 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=55.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc--ccCCCCCCChhhhccccccCCcC-CcccCCCH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKERKNLDPAAAPFAKDPGDFM-GLREGASL 400 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL--v~~~r~~l~~~k~~fa~~~~~~~-~~~~~~~L 400 (603)
++|.|+|||+=|+++|..+.+- |- .=++|..|.+=. |..+|. ...|...- .++ +..-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~-----N~~yLp~i-~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE-----NPKYLPGI-LLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc-----CccccCCc-cCCcccccccCH
Confidence 6899999999999999998774 31 136777765411 111111 11122110 000 01124678
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007456 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LS 444 (603)
.++++.. =.+|++++++ +-+++++.|.....++.+|.-+|
T Consensus 66 ~~a~~~a-d~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDGA-DIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhcC-CEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 8888863 2345555544 66778887743234555555554
No 171
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.93 E-value=6.5 Score=41.73 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 300 aaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
.-+|-.|++.=++-.+.+++. +++|++|-+ ..|.-+|.||... |. .+.++.|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~A-------tVtichs~----------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKG---KRALVVGRSNIVGKPMAMMLLER-----HA-------TVTIAHSR----------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC-----------
Confidence 466788888889999998888 999999976 5788888777542 21 45555432
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 379 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.++.+++++|+.
T Consensus 191 ------------------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 191 ------------------TADLAGEVGR--ADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1247778887 799999999999999999883
No 172
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.76 E-value=6.6 Score=41.69 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=87.4
Q ss_pred HHHHHHHHHhC--CC---eEEEee---cCCCchHHHHHHHHhhc--C------CccccCCchhHHHHHHHHHHHHHHhCC
Q 007456 253 DEFMEAVHARW--PK---AIVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (603)
Q Consensus 253 defv~av~~~~--P~---~~Iq~E---Df~~~naf~iL~ryr~~--~------~~FnDDiQGTaaV~lAgll~A~r~tg~ 316 (603)
+||.+.++++- |+ .++|+= .+.....++.++-.+|- + ..|..|..+-.-+|-.|++.=++-.+.
T Consensus 75 ~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i 154 (282)
T PRK14180 75 SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI 154 (282)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC
Confidence 56777777773 54 366653 45444444444333331 1 122222244467788899999999999
Q ss_pred CCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
+++. .++|++|.+ ..|.-+|.||.. .|. .+.+++++
T Consensus 155 ~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~---------------------------- 191 (282)
T PRK14180 155 KTEG---AYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF---------------------------- 191 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC----------------------------
Confidence 8888 999999975 578888888854 232 46666543
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (603)
..+|.+.+++ +|++|-..+.|+.|++++|+
T Consensus 192 -T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 -TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1247777777 79999999999999998887
No 173
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.70 E-value=6.4 Score=41.87 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-.|++.=++-.+.+++. .++|++|.+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~---------- 188 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAG---KEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK---------- 188 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC----------
Confidence 3466788888888889998888 999999975 678888888864 232 46655542
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-+.+.++.++.++||.
T Consensus 189 -------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 219 (287)
T PRK14173 189 -------------------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVRP 219 (287)
T ss_pred -------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1247888888 799999999999999998873
No 174
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.68 E-value=8.6 Score=39.34 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=55.7
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCC-cccCCCHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG-LREGASLLEV 403 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~-~~~~~~L~e~ 403 (603)
||.|+|+|+.|..+|..|... | .+++++|+++=-.+ .+......+ .+ .+... .....++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~g~~~-~~-~~~~~~~~~~~~~~~~ 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLD---ALNENGLRL-ED-GEITVPVLAADDPAEL 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHH---HHHHcCCcc-cC-CceeecccCCCChhHc
Confidence 799999999999999887653 3 36888887431110 010000000 00 00000 0012345554
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
+ ++|++| ++.. .--++++++.++....+.-+|+.+.|.-.
T Consensus 65 -~--~~d~vi-la~k-~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 -G--PQDLVI-LAVK-AYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred -C--CCCEEE-Eecc-cccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 3 478776 4432 23468999998653445556777999754
No 175
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.63 E-value=17 Score=38.83 Aligned_cols=135 Identities=16% Similarity=0.262 Sum_probs=87.8
Q ss_pred HHHHHHHHHhC--CCe---EEEeecCCCchHHHHHHHHhh--cC---------CccccCCchhHHHHHHHHHHHHHHhCC
Q 007456 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYRK--RF---------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (603)
Q Consensus 253 defv~av~~~~--P~~---~Iq~EDf~~~naf~iL~ryr~--~~---------~~FnDDiQGTaaV~lAgll~A~r~tg~ 316 (603)
+|+.+.+.++- |++ ++|+==.+.-+..++++...- .+ ..|..|-.+-.-+|-.|++.=++-.|.
T Consensus 70 ~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~~i 149 (287)
T PRK14181 70 SDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYYEI 149 (287)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence 56777777764 543 777643333344444444321 12 223344334567788889999999999
Q ss_pred CCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
+++. +++|++|-+ ..|.-+|.||... |-+. . ..+.++.|+
T Consensus 150 ~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~~-~--AtVtvchs~---------------------------- 190 (287)
T PRK14181 150 PLHG---RHVAIVGRSNIVGKPLAALLMQK-----HPDT-N--ATVTLLHSQ---------------------------- 190 (287)
T ss_pred CCCC---CEEEEECCCccchHHHHHHHHhC-----cCCC-C--CEEEEeCCC----------------------------
Confidence 8888 999999975 5788888887652 1110 1 135544332
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.|+.++.|+|+.
T Consensus 191 -T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 191 -SENLTEILKT--ADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred -CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888888 799999999999999999883
No 176
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=78.59 E-value=11 Score=40.09 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=72.6
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC---cccCCCCCCChhhhccccccCCcCCcccCCC
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG---LITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G---Lv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
.||.|+|| |..|..+|..++.. |+. ..++++|++- .+...+.++.+....+.... .+ ....+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-----g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i---~~~~d 66 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-----DVV-----KEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EI---KISSD 66 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CCC-----CEEEEEECcccccccccccchhhhchhccCCCc-EE---EECCC
Confidence 37999998 99999999877653 442 3799999853 11111112221110110010 11 01234
Q ss_pred HHHHhcccCCcEEEeecCCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CC
Q 007456 400 LLEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GE 463 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt--~G 463 (603)
.+.+++ .|+.|=+.+.| | .+-+++++.|.+ ++...+|+-.+||.+ +...-+++++ ..
T Consensus 67 -~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~-~~~~~~viv~~npvd---~~t~~~~~~~g~~~ 139 (309)
T cd05294 67 -LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAE-FAPDTKILVVTNPVD---VMTYKALKESGFDK 139 (309)
T ss_pred -HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCchH---HHHHHHHHhcCCCH
Confidence 345777 68877444432 2 245677788854 788999999999986 4445555443 12
Q ss_pred cEEEEcCC
Q 007456 464 NIVFASGS 471 (603)
Q Consensus 464 rai~AtGS 471 (603)
+-+|++|.
T Consensus 140 ~~viG~gt 147 (309)
T cd05294 140 NRVFGLGT 147 (309)
T ss_pred HHEeeccc
Confidence 34667764
No 177
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=78.33 E-value=1.7 Score=43.20 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=51.9
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
++|++ .||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- +.. .+|..+ .|.... + -+.+
T Consensus 17 ~~L~~---s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~--snL~rq--fl~~~~-d-iG~~ 75 (197)
T cd01492 17 KRLRS---ARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTE--EDLGAQ--FLIPAE-D-LGQN 75 (197)
T ss_pred HHHHh---CcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccH--hhCCCC--ccccHH-H-cCch
Confidence 44556 9999999999999999999776 44 6899999983 222 233321 222211 1 1111
Q ss_pred cCCCHHHHhcccCCcEEEeec
Q 007456 396 EGASLLEVVRKVKPHVLLGLS 416 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S 416 (603)
....+.+.++...|++-|=..
T Consensus 76 Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 76 RAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHHHHHCCCCEEEEE
Confidence 224578888889999877544
No 178
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=78.27 E-value=29 Score=39.65 Aligned_cols=222 Identities=18% Similarity=0.155 Sum_probs=128.0
Q ss_pred hCCCe-EEEeecCCCchHHHHHHHHhhcCCccccCC---chhHHHHHHHHHHHHHHh---------C---C-C--CCCCC
Q 007456 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L-S--LTDFA 322 (603)
Q Consensus 262 ~~P~~-~Iq~EDf~~~naf~iL~ryr~~~~~FnDDi---QGTaaV~lAgll~A~r~t---------g---~-~--l~dl~ 322 (603)
..|+. +|+.--.+..| ..+-.--+.-+++.|-.- +-+|=-+++-+|+..|-. | + . -.+|.
T Consensus 61 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 139 (526)
T PRK13581 61 AAKNLKVIGRAGVGVDN-VDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELY 139 (526)
T ss_pred hCCCCeEEEECCccccc-ccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccC
Confidence 45776 77776666665 222222234477777532 335666788888887741 1 0 0 12455
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
++++.|+|.|..|..+|+.+... |+ +++.+|+.. . . .+ ...... ...+|.|
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~--~--~-----~~--~~~~g~------~~~~l~e 190 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-----GM-------KVIAYDPYI--S--P-----ER--AAQLGV------ELVSLDE 190 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC--C--h-----hH--HHhcCC------EEEcHHH
Confidence 59999999999999999998754 44 688888742 1 1 00 000000 1137999
Q ss_pred HhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceec
Q 007456 403 VVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDL 478 (603)
Q Consensus 403 ~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~ 478 (603)
+++. .|+++=.-. .-+.|+++.+..|. +..++.-.|.-..--|.--.+|++ .|+.-.|.=-=|.+-..
T Consensus 191 ll~~--aDiV~l~lP~t~~t~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 191 LLAR--ADFITLHTPLTPETRGLIGAEELAKMK----PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPP 262 (526)
T ss_pred HHhh--CCEEEEccCCChHhhcCcCHHHHhcCC----CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCC
Confidence 9887 688763321 23789999999993 567888887755533444444544 56664332111111101
Q ss_pred CCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCC
Q 007456 479 GNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDE 529 (603)
Q Consensus 479 ~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~ 529 (603)
. .. .--+..|+.+-|=+|-....+ ...|...+++.+......+
T Consensus 263 ~-~~--pL~~~~nvilTPHia~~t~e~-----~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 263 T-DS--PLFELPNVVVTPHLGASTAEA-----QENVAIQVAEQVIDALRGG 305 (526)
T ss_pred C-Cc--hhhcCCCeeEcCccccchHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 0 11 112345899999887433322 3456666677776665543
No 179
>PRK07680 late competence protein ComER; Validated
Probab=77.93 E-value=6.6 Score=40.34 Aligned_cols=98 Identities=9% Similarity=0.195 Sum_probs=57.7
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~G-ls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
+|.|+|+|..|..+|..+... | +. ..+++++|++- . ... .++.....+ ....+..|+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~v~v~~r~~---~---~~~----~~~~~~~g~---~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAVK----PSQLTITNRTP---A---KAY----HIKERYPGI---HVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECCCH---H---HHH----HHHHHcCCe---EEECCHHHH
Confidence 689999999999999887653 3 21 13577777641 0 111 111110000 112467777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
++. +|++| ++. +....+++++.++....+..+|..++|+.+
T Consensus 60 ~~~--aDiVi-lav-~p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 60 ISQ--SDLIF-ICV-KPLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHh--CCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 765 67765 332 333467888887542345678889998765
No 180
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=77.87 E-value=3.8 Score=42.17 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.|++.+++-.+..... .+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~---k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPN---QRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccC---CEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3466666543444445 899999999777777766654 23 268888863
No 181
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=77.79 E-value=8.5 Score=40.46 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=57.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccc-cCC--cC--CcccCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGD--FM--GLREGA 398 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~-~~~--~~--~~~~~~ 398 (603)
.||.|+|+|..|..+|..+.++ |. +++++|+..-.. .+......+... ..+ +. ......
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G~-------~V~~~~r~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 66 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----GA-------DVTLIGRARIGD----ELRAHGLTLTDYRGRDVRVPPSAIAFST 66 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----CC-------cEEEEecHHHHH----HHHhcCceeecCCCcceecccceeEecc
Confidence 5899999999999999998764 42 588888742110 010000000000 000 00 000012
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 007456 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (603)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~ 449 (603)
++ ++++. +|++|=+.. .-..+++++.+.....+..+|..++|....
T Consensus 67 ~~-~~~~~--~D~vil~vk--~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 67 DP-AALAT--ADLVLVTVK--SAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred Ch-hhccC--CCEEEEEec--CcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 34 45544 788774432 223478888886534566788888997653
No 182
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.74 E-value=49 Score=33.63 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=54.0
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
||.|+|+|..|..+++-|... |.. .+.+++.|+. .+........+. .. ....+..|++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~------~~~~~~l~~~~~--~~-----~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN------AQIAARLAERFP--KV-----RIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC------HHHHHHHHHHcC--Cc-----eEeCCHHHHH
Confidence 689999999999999888653 432 1346666642 011222111121 00 1124677777
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 007456 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (603)
Q Consensus 405 ~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~ 449 (603)
+. .|++| ++..+..+ +++++... ..+..+|+.++-+++.
T Consensus 60 ~~--aDvVi-lav~p~~~-~~vl~~l~--~~~~~~vis~~ag~~~ 98 (258)
T PRK06476 60 DR--SDVVF-LAVRPQIA-EEVLRALR--FRPGQTVISVIAATDR 98 (258)
T ss_pred Hh--CCEEE-EEeCHHHH-HHHHHHhc--cCCCCEEEEECCCCCH
Confidence 66 56655 33324333 67776652 3455688877766653
No 183
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.73 E-value=8.2 Score=41.13 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=76.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||.|+|||..|..+|-.|+. .|+. ..|.|+|.+-=..++- .+|.+.. +|.... .. ....+.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~~-----~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~-~v---~~~~dy~~ 68 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGLA-----DELVLVDVVEDKLKGEAMDLQHGS-AFLKNP-KI---EADKDYSV 68 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHHHHHhh-ccCCCC-EE---EECCCHHH
Confidence 699999999999998887653 3553 5799999742111111 1344333 332211 11 11245554
Q ss_pred HhcccCCcEEEeecCC---CCCCCH------------HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcE
Q 007456 403 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENI 465 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~Ft~------------evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt--~Gra 465 (603)
++. .|++|=+.+. +| -|+ ++++.|. +++..-+|+-.|||.. ....-+++++ .-+-
T Consensus 69 -~~~--adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~-~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~ 140 (312)
T cd05293 69 -TAN--SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLV-KYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHR 140 (312)
T ss_pred -hCC--CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEccChHH---HHHHHHHHHhCCCHHH
Confidence 666 6887643333 34 233 5667775 4899999999999996 5666666653 1234
Q ss_pred EEEcCCCC
Q 007456 466 VFASGSPF 473 (603)
Q Consensus 466 i~AtGSPf 473 (603)
+|.+|+-.
T Consensus 141 viG~gt~L 148 (312)
T cd05293 141 VIGSGCNL 148 (312)
T ss_pred EEecCchH
Confidence 67776543
No 184
>PRK14851 hypothetical protein; Provisional
Probab=77.59 E-value=6.1 Score=46.60 Aligned_cols=128 Identities=18% Similarity=0.192 Sum_probs=77.7
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCC--CC------CCChhhhccccc
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAKD 387 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~--r~------~l~~~k~~fa~~ 387 (603)
++|++ .||+|+|+|..|.-+|..|+.+.+ .+|.++|-+=+-..+ |. ++-..|..-++.
T Consensus 39 ~kL~~---~~VlIvG~GGlGs~va~~Lar~GV-----------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~ 104 (679)
T PRK14851 39 ERLAE---AKVAIPGMGGVGGVHLITMVRTGI-----------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKE 104 (679)
T ss_pred HHHhc---CeEEEECcCHHHHHHHHHHHHhCC-----------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHH
Confidence 45566 999999999999999988887644 689999987433221 21 222223222221
Q ss_pred ----cCC---cCCcc---cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC----------CCC
Q 007456 388 ----PGD---FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS----------NPT 447 (603)
Q Consensus 388 ----~~~---~~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LS----------NPt 447 (603)
-++ +.... ...++.+.+++ .|++|-+..-.-.-++..|...|. .+..|+|++-. +|.
T Consensus 105 ~l~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~-~~~iP~i~~g~~G~~g~~~~~~p~ 181 (679)
T PRK14851 105 QALSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAR-EKGIPVITAGPLGYSSAMLVFTPQ 181 (679)
T ss_pred HHHHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEeecccccceEEEEcCC
Confidence 111 00000 11356777776 799995553211112345666654 56799998754 676
Q ss_pred CccCCCHHHHhcccCC
Q 007456 448 MNAECTAADAFKHAGE 463 (603)
Q Consensus 448 ~~aE~tpeda~~wt~G 463 (603)
....++.|.+.++
T Consensus 182 ---~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 ---GMGFDDYFNIGGK 194 (679)
T ss_pred ---CCCHhHhccCCCC
Confidence 4888899998777
No 185
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.57 E-value=1.9 Score=46.78 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=31.4
Q ss_pred CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|++ .||+++|+|..|..+|..|+.+ |+ ++|.++|.+
T Consensus 132 ~l~~---~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 132 RLLE---ARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHhc---CcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 4566 9999999999999999998776 44 589999987
No 186
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.90 E-value=7.2 Score=41.71 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 300 aaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
.-+|-.|++.=++-.+.+++. ++++++|.+ .-|.-+|.||..... ..+ ..+.++.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~~~-~~~-------aTVtvchs~----------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEG---ADVVVVGRSDIVGKPMANLLIQKAD-GGN-------ATVTVCHSR----------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCcccHHHHHHHHhcCcc-CCC-------CEEEEeCCC-----------
Confidence 456788888888999998888 999999975 578888888754211 001 135545442
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 379 ~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-+.+.|+.++.++|+.
T Consensus 195 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 195 ------------------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1347888888 799999999999999998883
No 187
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=76.86 E-value=3.7 Score=46.18 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.|++.+++-.+..++. .+++|+|+|.+|.+++..+.+ .|. +++++|++
T Consensus 317 ~G~~~~l~~~~~~~~~---k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNN---QHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 3588888877777777 999999999777766666654 343 57777763
No 188
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=76.67 E-value=2.3 Score=45.83 Aligned_cols=39 Identities=31% Similarity=0.567 Sum_probs=32.2
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.+|+. .||+|+|+|.-|.-+|..|+.+ |+ .+|.++|.+-
T Consensus 20 ~~L~~---~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLRE---KHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 44556 9999999999999999988775 44 5899999963
No 189
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=76.61 E-value=3.6 Score=46.31 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=64.5
Q ss_pred HHHHHhCCCeEEEeecCCCchHHHHHHHHhhc-CC--ccccCCchhHHHHHHHHHHHHHHhCC--------CCCCCCCce
Q 007456 257 EAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQGL--------SLTDFADQK 325 (603)
Q Consensus 257 ~av~~~~P~~~Iq~EDf~~~naf~iL~ryr~~-~~--~FnDDiQGTaaV~lAgll~A~r~tg~--------~l~dl~~~r 325 (603)
+.+....|+ |.+|=+....-.++.++|.-. +| .+|++....|....+-++..++.... ...+ -.
T Consensus 139 ~~~a~~~~~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d 213 (517)
T PRK15317 139 NLMAVLNPN--ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDP---YD 213 (517)
T ss_pred HHHHHhCCC--ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCC---CC
Confidence 333444574 444445556667888999755 33 35777788888888899988875321 1234 68
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+||+|||.||+..|..+.. .|+ ++.++|.+
T Consensus 214 vvIIGgGpaGl~aA~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 214 VLVVGGGPAGAAAAIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred EEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 9999999999999988854 465 46667654
No 190
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=76.59 E-value=7.3 Score=42.79 Aligned_cols=86 Identities=10% Similarity=0.199 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+-.-+|-.|++.=++..+.+++. +++||+|-+ ..|.-+|.||... |. .+.++.|+
T Consensus 209 ~f~PCTp~avielL~~y~i~l~G---K~vvVIGRS~iVGkPLa~LL~~~-----~A-------TVTicHs~--------- 264 (364)
T PLN02616 209 LFVPCTPKGCIELLHRYNVEIKG---KRAVVIGRSNIVGMPAALLLQRE-----DA-------TVSIVHSR--------- 264 (364)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHHC-----CC-------eEEEeCCC---------
Confidence 34566778888889999998888 999999975 5788888877552 32 46666442
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.++.++.++||.
T Consensus 265 --------------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 265 --------------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred --------------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcCC
Confidence 1357888888 799999999999999999883
No 191
>PRK06487 glycerate dehydrogenase; Provisional
Probab=76.01 E-value=37 Score=36.21 Aligned_cols=217 Identities=16% Similarity=0.155 Sum_probs=118.8
Q ss_pred hCCCe-EEEeecCCCchHHHHHHHHhh-cCCccccC---CchhHHHHHHHHHHHHHHh---------CC-----------
Q 007456 262 RWPKA-IVQFEDFQMKWAFETLERYRK-RFCMFNDD---IQGTAGVALAGLLGTVRAQ---------GL----------- 316 (603)
Q Consensus 262 ~~P~~-~Iq~EDf~~~naf~iL~ryr~-~~~~FnDD---iQGTaaV~lAgll~A~r~t---------g~----------- 316 (603)
..|+. .|+.-=.+..| ..+ +..++ -+.+.|-- -+.+|=-+++-+|+.+|-. |+
T Consensus 63 ~~~~Lk~I~~~~~G~d~-id~-~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~ 140 (317)
T PRK06487 63 AAPQLKLILVAATGTNN-VDL-AAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLD 140 (317)
T ss_pred hCCCCeEEEEcCccccc-cCH-HHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCccccccc
Confidence 34554 55544444333 222 22222 35555532 2355666778888776632 10
Q ss_pred -CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 317 -~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
...+|.++++.|+|.|..|..+|+.+... |+ +|+.+|+.+- +. .+
T Consensus 141 ~~~~~l~gktvgIiG~G~IG~~vA~~l~~f-----gm-------~V~~~~~~~~-----~~-------~~---------- 186 (317)
T PRK06487 141 FPIVELEGKTLGLLGHGELGGAVARLAEAF-----GM-------RVLIGQLPGR-----PA-------RP---------- 186 (317)
T ss_pred CcccccCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEEECCCCC-----cc-------cc----------
Confidence 11356669999999999999999988654 44 5777776520 00 00
Q ss_pred cCCCHHHHhcccCCcEEEee----cCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCC
Q 007456 396 EGASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGS 471 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~----S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGS 471 (603)
...+|.|+++. .|+++=. ...-|.|+++.+..|. +..++.=.|.=.---|----+|++ +|+.--|.=-
T Consensus 187 ~~~~l~ell~~--sDiv~l~lPlt~~T~~li~~~~~~~mk----~ga~lIN~aRG~vVde~AL~~AL~--~g~i~gAaLD 258 (317)
T PRK06487 187 DRLPLDELLPQ--VDALTLHCPLTEHTRHLIGARELALMK----PGALLINTARGGLVDEQALADALR--SGHLGGAATD 258 (317)
T ss_pred cccCHHHHHHh--CCEEEECCCCChHHhcCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCeeEEEee
Confidence 12369999988 6888732 2224899999999993 567777666533322222223433 6766544322
Q ss_pred CCCceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCC
Q 007456 472 PFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMT 527 (603)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 527 (603)
=|.+-..+.+..+.--+..|+++-|=+|-.. ..-.+.|...+++.|.+...
T Consensus 259 Vf~~EP~~~~~pl~~~~~pnvilTPHia~~t-----~e~~~~~~~~~~~ni~~~~~ 309 (317)
T PRK06487 259 VLSVEPPVNGNPLLAPDIPRLIVTPHSAWGS-----REARQRIVGQLAENARAFFA 309 (317)
T ss_pred cCCCCCCCCCCchhhcCCCCEEECCccccCC-----HHHHHHHHHHHHHHHHHHHc
Confidence 2211111111111100356899999887322 22334555556666655543
No 192
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.91 E-value=8.3 Score=41.06 Aligned_cols=126 Identities=19% Similarity=0.282 Sum_probs=73.8
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhcccc-ccCCcCCcccCCCHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAK-DPGDFMGLREGASLLE 402 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~-~~~~~~~~~~~~~L~e 402 (603)
||.|+|||..|..+|-+|+. .|+- +.+.|+|.+-=..++. -+|.+.. .|.. ..-.. ...+ .+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i----~~~~-y~ 64 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGLF-----SEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKI----RAGD-YD 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEE----EECC-HH
Confidence 68999999999999987764 2442 4799999731111111 1344433 2221 11000 1123 45
Q ss_pred HhcccCCcEEEeecCC---CCCC-------------CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--Cc
Q 007456 403 VVRKVKPHVLLGLSGV---GGVF-------------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--EN 464 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~F-------------t~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~--Gr 464 (603)
.+++ .|++|=+.+. ||-= =+++++.+.+ ++...|++-.|||.. +...-+++++. =+
T Consensus 65 ~~~~--aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~-~~p~~i~ivvsNPvD---v~t~~~~k~sg~p~~ 138 (307)
T cd05290 65 DCAD--ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITK-VTKEAVIILITNPLD---IAVYIAATEFDYPAN 138 (307)
T ss_pred HhCC--CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecCcHH---HHHHHHHHHhCcChh
Confidence 6777 6887744443 3421 1467777754 889999999999985 55556666541 23
Q ss_pred EEEEcCCC
Q 007456 465 IVFASGSP 472 (603)
Q Consensus 465 ai~AtGSP 472 (603)
-+|.||.=
T Consensus 139 rviG~gt~ 146 (307)
T cd05290 139 KVIGTGTM 146 (307)
T ss_pred heecccch
Confidence 35566533
No 193
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.38 E-value=66 Score=35.69 Aligned_cols=223 Identities=18% Similarity=0.198 Sum_probs=126.0
Q ss_pred HhCCCe-EEEeecCCCchHHHHHHHHhhcCCccccCC---chhHHHHHHHHHHHHHHh---------C---C---CCCCC
Q 007456 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L---SLTDF 321 (603)
Q Consensus 261 ~~~P~~-~Iq~EDf~~~naf~iL~ryr~~~~~FnDDi---QGTaaV~lAgll~A~r~t---------g---~---~l~dl 321 (603)
...|+. .|+.-=.+..| ..+-.--+.-++++|--- +.+|=-+++.+|+.+|-. | + .-.+|
T Consensus 71 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L 149 (409)
T PRK11790 71 AAAEKLVAIGCFCIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEV 149 (409)
T ss_pred hhCCCCeEEEECceeccc-ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccC
Confidence 345766 67665555554 333332334588888532 335556788888887731 1 0 11345
Q ss_pred CCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHH
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~ 401 (603)
.+.++.|+|.|..|..+|+.+... |+ +++.+|+.. ..... .++ ...+|.
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-----Gm-------~V~~~d~~~-----~~~~~-----~~~---------~~~~l~ 198 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-----GM-------RVYFYDIED-----KLPLG-----NAR---------QVGSLE 198 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCCc-----ccccC-----Cce---------ecCCHH
Confidence 569999999999999999988654 44 688888631 00000 000 124799
Q ss_pred HHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCC-CCce
Q 007456 402 EVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP-FENV 476 (603)
Q Consensus 402 e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSP-f~pv 476 (603)
|+++. .|+++=.-- .-+.|+++.+..|. +.-++.-.|.-.---|---.+|++ .|+ |.+.|.- |++-
T Consensus 199 ell~~--sDiVslh~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDVf~~E 269 (409)
T PRK11790 199 ELLAQ--SDVVSLHVPETPSTKNMIGAEELALMK----PGAILINASRGTVVDIDALADALK--SGH-LAGAAIDVFPVE 269 (409)
T ss_pred HHHhh--CCEEEEcCCCChHHhhccCHHHHhcCC----CCeEEEECCCCcccCHHHHHHHHH--cCC-ceEEEEcCCCCC
Confidence 99988 688763211 13789999999993 466777766544322323334443 566 4333321 2211
Q ss_pred ecCCC-e-eeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCC
Q 007456 477 DLGNG-K-IGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDE 529 (603)
Q Consensus 477 ~~~~G-~-~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~ 529 (603)
..+.. . ...--+.-|+++-|=+|-...-+ ...|...+++.+......+
T Consensus 270 P~~~~~~~~~pL~~~~nvilTPHia~~t~ea-----~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 270 PKSNGDPFESPLRGLDNVILTPHIGGSTQEA-----QENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred CCCccccccchhhcCCCEEECCcCCCCHHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 11000 0 01112456899999887443322 3445566677666665433
No 194
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.35 E-value=9 Score=40.96 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-.|++.=++-.|.+++. +++|++|.+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~G---k~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~---------- 191 (297)
T PRK14186 137 LRSCTPAGVMRLLRSQQIDIAG---KKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR---------- 191 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC----------
Confidence 3456788888888999998888 999999975 578888888754 232 35555432
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-+.+.++.|+.++|+.
T Consensus 192 -------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 192 -------------------TQDLASITRE--ADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1357888888 799999999999999998883
No 195
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=75.07 E-value=2.7 Score=44.08 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=32.6
Q ss_pred CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
+|++ .+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=.-
T Consensus 27 kL~~---s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~ 66 (268)
T PRK15116 27 LFAD---AHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVC 66 (268)
T ss_pred HhcC---CCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEec
Confidence 3555 9999999999999999988776 44 589999988443
No 196
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.07 E-value=2.7 Score=45.50 Aligned_cols=107 Identities=24% Similarity=0.385 Sum_probs=67.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
-+++|+|.|-+|+--|++.+ |+. .++.++|.+ .+| |......|..+-.-. ......++|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r--l~~ldd~f~~rv~~~--~st~~~iee~ 228 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR--LRQLDDLFGGRVHTL--YSTPSNIEEA 228 (371)
T ss_pred ccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH--HhhhhHhhCceeEEE--EcCHHHHHHH
Confidence 78999999999999887654 333 367778764 122 333333343221000 0012458999
Q ss_pred hcccCCcEEEee-----cCCCCCCCHHHHHHhhhcCCCCCe----------EEecCCCCCccCCCHHH
Q 007456 404 VRKVKPHVLLGL-----SGVGGVFNEEVLKAMRESDSVKPA----------IFAMSNPTMNAECTAAD 456 (603)
Q Consensus 404 V~~vkptvLIG~-----S~~~g~Ft~evv~~M~~~~~erPI----------IF~LSNPt~~aE~tped 456 (603)
|++ .|.+||. +..|.+.|+|+++.|. +--+ +|-=|.||+.++-|.+.
T Consensus 229 v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk----pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 229 VKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK----PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred hhh--ccEEEEEEEecCCCCceehhHHHHHhcC----CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 987 7999887 3345679999999994 2333 35556777776666543
No 197
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=74.78 E-value=1.1e+02 Score=34.52 Aligned_cols=193 Identities=20% Similarity=0.201 Sum_probs=123.1
Q ss_pred cCCChhhhhHhHHHHHHHHHHhC-CCeEEEeecCCCch--HHHHHHHHhhcC-----Ccc------ccCCc----hhHHH
Q 007456 241 PRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKRF-----CMF------NDDIQ----GTAGV 302 (603)
Q Consensus 241 ~R~~g~~Y~~~vdefv~av~~~~-P~~~Iq~EDf~~~n--af~iL~ryr~~~-----~~F------nDDiQ----GTaaV 302 (603)
+..+..|-..|...|++++.+.- |+.-|-=+|++..- =--+.+.|+.-. ++| .-=.+ -||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 44677888899999999999987 89999999998632 222556665432 111 11112 23322
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhh
Q 007456 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (603)
Q Consensus 303 ~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~ 382 (603)
+.-++-.|++..|.+|+. .||.|-|-|.+|.-.|+.+.+. |- +=+-+=|++|-|++. +.|+..+.
T Consensus 190 v~~~~~~a~~~~g~~l~G---~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~-~Gld~~~l 254 (411)
T COG0334 190 VFYAIREALKALGDDLEG---ARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDE-DGLDVEAL 254 (411)
T ss_pred hHHHHHHHHHHcCCCcCC---CEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecC-CCCCHHHH
Confidence 222233777778877777 9999999999999999888764 43 457777899988876 34553333
Q ss_pred cccccc----CCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHH
Q 007456 383 PFAKDP----GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADA 457 (603)
Q Consensus 383 ~fa~~~----~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~tpeda 457 (603)
...++. .+..+ ....+- |.+-.+..||||=+.. .+..|++-.+...+ + +|.=-+| |+. ..+++.
T Consensus 255 ~~~~~~~~~v~~~~g-a~~i~~-~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a----k-~V~EgAN~P~t---~eA~~i 323 (411)
T COG0334 255 LELKERRGSVAEYAG-AEYITN-EELLEVDCDILIPCAL-ENVITEDNADQLKA----K-IVVEGANGPTT---PEADEI 323 (411)
T ss_pred HHHhhhhhhHHhhcC-ceEccc-cccccccCcEEccccc-ccccchhhHHHhhh----c-EEEeccCCCCC---HHHHHH
Confidence 211110 00000 001111 3344466899997664 79999999999853 2 8888888 775 455566
Q ss_pred hc
Q 007456 458 FK 459 (603)
Q Consensus 458 ~~ 459 (603)
+.
T Consensus 324 ~~ 325 (411)
T COG0334 324 LL 325 (411)
T ss_pred HH
Confidence 55
No 198
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=74.65 E-value=16 Score=39.12 Aligned_cols=128 Identities=19% Similarity=0.289 Sum_probs=75.3
Q ss_pred eEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007456 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
||.|+|| |..|..+|-+|+. .|+- ..+.|+|.+. ..+. -+|.+.. ... .........++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~--a~g~a~DL~~~~----~~~-~i~~~~~~~~~~~ 63 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPYV-----SELSLYDIAG--AAGVAADLSHIP----TAA-SVKGFSGEEGLEN 63 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEecCCC--CcEEEchhhcCC----cCc-eEEEecCCCchHH
Confidence 6899999 9999999987754 2442 4799999876 2221 2454432 110 0000001124678
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHHhccc---CCc
Q 007456 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAFKHA---GEN 464 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~-~aE~tpeda~~wt---~Gr 464 (603)
+++. .|++|=+.+.+ |- .=+++.+.+. +++...||+-.|||.. ++.+..+-+++++ ..|
T Consensus 64 ~~~d--aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~-~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~r 140 (312)
T TIGR01772 64 ALKG--ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVA-ESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNK 140 (312)
T ss_pred HcCC--CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHH-HhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHH
Confidence 8888 68877444433 31 1135556664 3889999999999985 2222555555543 223
Q ss_pred EEEEcCCCCC
Q 007456 465 IVFASGSPFE 474 (603)
Q Consensus 465 ai~AtGSPf~ 474 (603)
+|.+|. .+
T Consensus 141 -ViG~g~-LD 148 (312)
T TIGR01772 141 -LFGVTT-LD 148 (312)
T ss_pred -EEeeec-ch
Confidence 666664 44
No 199
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=74.38 E-value=3.3 Score=43.48 Aligned_cols=102 Identities=24% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChh-----hhccccccCCcCCcc
Q 007456 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-----AAPFAKDPGDFMGLR 395 (603)
Q Consensus 322 ~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~-----k~~fa~~~~~~~~~~ 395 (603)
++.+|+|.|| |-.|..+++.|++ .| .+++.+|++.- ......+. +..+.. .+ ..
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~--~D---l~ 62 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TSPNLFELLNLAKKIEDHF--GD---IR 62 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cchhHHHHHhhcCCceEEE--cc---CC
Confidence 3489999996 7677777776665 34 25787876521 11111000 001111 01 11
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCC----------------CCHHHHHHhhhcCC-CCCeEEecC
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGV----------------FNEEVLKAMRESDS-VKPAIFAMS 444 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~----------------Ft~evv~~M~~~~~-erPIIF~LS 444 (603)
+..++.++++..+||++|=+.+.+.. .+..+++.|.. .+ .+.+||.=|
T Consensus 63 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~iv~~SS 127 (349)
T TIGR02622 63 DAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRA-IGSVKAVVNVTS 127 (349)
T ss_pred CHHHHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHh-cCCCCEEEEEec
Confidence 23467888888899999977664321 13455666643 33 457888654
No 200
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=74.25 E-value=9 Score=41.29 Aligned_cols=115 Identities=21% Similarity=0.340 Sum_probs=68.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC-CcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~-GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||.++|||..|-..|-+|+. +++. +.+.|+|.. +...-..-+|.+..-+.-.+. .. ....+ .+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~-~i---~~~~~-y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALDLSHAAAPLGSDV-KI---TGDGD-YE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcchhhcchhccCce-EE---ecCCC-hh
Confidence 389999999999999888833 3453 379999987 221111224443322211111 00 01123 45
Q ss_pred HhcccCCcEEE---eecCCCC-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007456 403 VVRKVKPHVLL---GLSGVGG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (603)
Q Consensus 403 ~V~~vkptvLI---G~S~~~g-----------~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~ 459 (603)
.++. .|+.| |....|| ..-+++.+.+++ ++...||+-.|||.. ....-+++
T Consensus 66 ~~~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~-~~~d~ivlVvtNPvD---~~ty~~~k 130 (313)
T COG0039 66 DLKG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAK-YAPDAIVLVVTNPVD---ILTYIAMK 130 (313)
T ss_pred hhcC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHh-hCCCeEEEEecCcHH---HHHHHHHH
Confidence 5666 58766 3333455 134577788864 899999999999986 44444544
No 201
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=74.24 E-value=6.5 Score=42.40 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+.||||+|+|.||+..|+.|.+. |.+ .+|.++|+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~~-----~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GFT-----GELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CCC-----CCEEEeCCC
Confidence 348999999999999999998763 322 368888765
No 202
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.17 E-value=9.8 Score=40.65 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCC
Q 007456 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (603)
Q Consensus 299 TaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l 377 (603)
-.-+|-.|++.=++-.+.+++. +++|++|.+ ..|.-+|.||.. .|.+. . ..+.++.|+
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~G---K~vvViGrS~iVGkPla~lL~~-----~~~~~-~--aTVtvchs~---------- 194 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSG---KKCVVLGRSNIVGKPMAQLMMQ-----KAYPG-D--CTVTVCHSR---------- 194 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHc-----CCCCC-C--CEEEEecCC----------
Confidence 3456778888888888998888 999999985 578888877754 22110 0 124444443
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 378 ~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.|+.++.|+|+.
T Consensus 195 -------------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 195 -------------------SKNLKKECLE--ADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888887 899999999999999988873
No 203
>PRK06270 homoserine dehydrogenase; Provisional
Probab=73.99 E-value=30 Score=37.28 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=65.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhh-hccccccCC---cCCccc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGD---FMGLRE 396 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~---~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k-~~fa~~~~~---~~~~~~ 396 (603)
.||.++|.|..|.+++++|.+. +.++.|+.. +=+-++|++|.+.+.+. ++..+ ..+++.... +.+...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~----~vvai~d~~~~~~~~~G-i~~~~~~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDL----KVVAIADSSGSAIDPDG-LDLELALKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCCcccCcCC-CCHHHHHHHHhccCCcccCccccc
Confidence 6899999999999999998753 222234321 22457899998887652 33221 222222111 000001
Q ss_pred CCCHHHHhcccCCcEEEeecCC---CCCCCHHHHHHhhhcCCCCCeEE
Q 007456 397 GASLLEVVRKVKPHVLLGLSGV---GGVFNEEVLKAMRESDSVKPAIF 441 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~---~g~Ft~evv~~M~~~~~erPIIF 441 (603)
..++.|+++...+||+|=++.. ++-...++++...+ +..+||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 2489999988889999977642 12233556444323 4678887
No 204
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.88 E-value=4.5 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=29.4
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCccc
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~ 371 (603)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988553 3 5799999987776
No 205
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=73.78 E-value=39 Score=38.57 Aligned_cols=223 Identities=19% Similarity=0.167 Sum_probs=125.7
Q ss_pred hCCCe-EEEeecCCCchHHHHHHHHhhcCCccccC---CchhHHHHHHHHHHHHHHh---------C----CC--CCCCC
Q 007456 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------G----LS--LTDFA 322 (603)
Q Consensus 262 ~~P~~-~Iq~EDf~~~naf~iL~ryr~~~~~FnDD---iQGTaaV~lAgll~A~r~t---------g----~~--l~dl~ 322 (603)
..|+. .|+.--.+..| ..+-.--+.-+++.|-- -+.+|=-+++.+|+..|-. | .. -.+|.
T Consensus 59 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 137 (525)
T TIGR01327 59 AAPKLKVIGRAGVGVDN-IDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELY 137 (525)
T ss_pred hCCCceEEEECCcccch-hcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccC
Confidence 35776 77776666665 33322223447777743 2345666788888877631 1 00 02355
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
++++.|+|-|..|..+|+.+... |+ +++.+|+.. ... ... .+ .. ....+|.|
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~--~~~-----~~~-~~---g~-----~~~~~l~e 189 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAF-----GM-------KVLAYDPYI--SPE-----RAE-QL---GV-----ELVDDLDE 189 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC--Chh-----HHH-hc---CC-----EEcCCHHH
Confidence 59999999999999999988654 44 588888741 110 000 00 00 01246999
Q ss_pred HhcccCCcEEEee-c---CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCCceec
Q 007456 403 VVRKVKPHVLLGL-S---GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDL 478 (603)
Q Consensus 403 ~V~~vkptvLIG~-S---~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~pv~~ 478 (603)
+++. .|+++=. . ..-+.|+++.+..|. +..++.=.|.-.---|.--.+|++ .|+.-.|.=-=|.+-..
T Consensus 190 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 190 LLAR--ADFITVHTPLTPETRGLIGAEELAKMK----KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPP 261 (525)
T ss_pred HHhh--CCEEEEccCCChhhccCcCHHHHhcCC----CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCC
Confidence 9877 6887622 1 124789999999993 567888777755433444445544 66655442111111000
Q ss_pred CCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCC
Q 007456 479 GNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDE 529 (603)
Q Consensus 479 ~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~ 529 (603)
. .. .--+..|+.+-|=+|-....+ ...|...+++.+-+....+
T Consensus 262 ~-~~--pL~~~~nvi~TPHia~~t~e~-----~~~~~~~~~~ni~~~~~g~ 304 (525)
T TIGR01327 262 T-DN--PLFDLDNVIATPHLGASTREA-----QENVATQVAEQVLDALKGL 304 (525)
T ss_pred C-CC--hhhcCCCeEECCCccccHHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 0 11 122456888888877433332 2344555566665555433
No 206
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.73 E-value=4.4 Score=43.33 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.2
Q ss_pred ceEEEeCcchhHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (603)
.||.|+|||+-|..+|..+.+
T Consensus 8 mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHH
Confidence 789999999999999998765
No 207
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=73.54 E-value=10 Score=41.49 Aligned_cols=86 Identities=14% Similarity=0.213 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCC
Q 007456 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~ 376 (603)
+-.-+|-.|++.=++-.+.+++. +++|++|-+ ..|.-+|.||... |. .+.++.++
T Consensus 192 ~~~PCTp~avi~LL~~~~i~l~G---K~vvVIGRS~iVGkPla~LL~~~-----~A-------TVTicHs~--------- 247 (345)
T PLN02897 192 LFVSCTPKGCVELLIRSGVEIAG---KNAVVIGRSNIVGLPMSLLLQRH-----DA-------TVSTVHAF--------- 247 (345)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHHC-----CC-------EEEEEcCC---------
Confidence 34566788888888999998888 999999975 5688888777542 32 35555443
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 377 l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-..+.|+.|+.++||.
T Consensus 248 --------------------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 248 --------------------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1247778888 799999999999999999884
No 208
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=73.31 E-value=1.8 Score=53.07 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=33.1
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|++ .||+++|||..|+-+++.|+.+++ ..|- ..+|.++|-+
T Consensus 415 ~kL~~---~kVlvvGaGGlG~e~lknLal~Gv-~~~~-----~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQN---LNIFLVGCGAIGCEMLKNFALMGV-GTGK-----KGMITVTDPD 457 (1008)
T ss_pred HHHhh---CcEEEECCChHHHHHHHHHHHhCC-CcCC-----CCeEEEECCC
Confidence 34556 999999999999999999988754 1111 3689999987
No 209
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=72.20 E-value=3.6 Score=39.17 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=20.8
Q ss_pred EEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 327 v~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|+|||.||+..|-.|.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977755 365 248899987
No 210
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=72.04 E-value=4.7 Score=38.33 Aligned_cols=95 Identities=20% Similarity=0.180 Sum_probs=53.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.||-|+|.|..|.++|+.|.+. |. +++.+|+. ++.-+.+.+... ....|+.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----------~~~~~~~~~~g~-----~~~~s~~e~ 54 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----------PEKAEALAEAGA-----EVADSPAEA 54 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----------HHHHHHHHHTTE-----EEESSHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----------hhhhhhhHHhhh-----hhhhhhhhH
Confidence 5899999999999999999653 44 58888853 122223332211 124689999
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHH--hhhcCCCCCeEEecCCCCC
Q 007456 404 VRKVKPHVLLGLSGVGGVFNEEVLKA--MRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~--M~~~~~erPIIF~LSNPt~ 448 (603)
++.. |++|-+-. .+.=.++++.. +.+...+..||.=+|+-++
T Consensus 55 ~~~~--dvvi~~v~-~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 55 AEQA--DVVILCVP-DDDAVEAVLFGENILAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp HHHB--SEEEE-SS-SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H
T ss_pred hhcc--cceEeecc-cchhhhhhhhhhHHhhccccceEEEecCCcch
Confidence 9884 77664322 12223455554 3333456778887887655
No 211
>PLN02306 hydroxypyruvate reductase
Probab=71.97 E-value=29 Score=38.31 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=78.5
Q ss_pred cCCccccCC---chhHHHHHHHHHHHHHHh---------CC--C-------CCCCCCceEEEeCcchhHHHHHHHHHHHH
Q 007456 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL--S-------LTDFADQKIVVVGAGSAGLGVLKMAVQAA 346 (603)
Q Consensus 288 ~~~~FnDDi---QGTaaV~lAgll~A~r~t---------g~--~-------l~dl~~~riv~~GAGsAg~GiA~li~~~~ 346 (603)
-+.+.|--- ..+|=-+++-+|+.+|-. |. . -.+|.++++.|+|.|..|..+|+++..+|
T Consensus 109 gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~f 188 (386)
T PLN02306 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (386)
T ss_pred CCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 366666421 234445677777766532 10 0 12456699999999999999999986432
Q ss_pred HHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhcccc-----ccCCcCCcccCCCHHHHhcccCCcEEEee----cC
Q 007456 347 ARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK-----DPGDFMGLREGASLLEVVRKVKPHVLLGL----SG 417 (603)
Q Consensus 347 ~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~-----~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~ 417 (603)
|+ +|+.+|+..- +.+......|-. ...+. ......+|.|+++. .|+++-. ..
T Consensus 189 ----Gm-------~V~~~d~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~L~ell~~--sDiV~lh~Plt~~ 249 (386)
T PLN02306 189 ----KM-------NLIYYDLYQS-----TRLEKFVTAYGQFLKANGEQPV-TWKRASSMEEVLRE--ADVISLHPVLDKT 249 (386)
T ss_pred ----CC-------EEEEECCCCc-----hhhhhhhhhhcccccccccccc-cccccCCHHHHHhh--CCEEEEeCCCChh
Confidence 43 6888887521 011110011110 00000 00012479999988 7998863 12
Q ss_pred CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007456 418 VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (603)
Q Consensus 418 ~~g~Ft~evv~~M~~~~~erPIIF~LSN 445 (603)
.-|.|+++.++.|. +.-++.=.|.
T Consensus 250 T~~lin~~~l~~MK----~ga~lIN~aR 273 (386)
T PLN02306 250 TYHLINKERLALMK----KEAVLVNASR 273 (386)
T ss_pred hhhhcCHHHHHhCC----CCeEEEECCC
Confidence 24899999999993 4566666664
No 212
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=71.83 E-value=3.7 Score=40.07 Aligned_cols=31 Identities=35% Similarity=0.672 Sum_probs=24.6
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|.|+|||..|.|||-+++.+ |. ++.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 689999999999999998875 43 68888885
No 213
>PRK07411 hypothetical protein; Validated
Probab=71.78 E-value=3.2 Score=45.53 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=32.7
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|++ .||+|+|+|.-|.-+|..|+.+.+ ++|.++|.+
T Consensus 34 ~~L~~---~~VlivG~GGlG~~va~~La~~Gv-----------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKA---ASVLCIGTGGLGSPLLLYLAAAGI-----------GRIGIVDFD 71 (390)
T ss_pred HHHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCC
Confidence 45566 999999999999999999988755 689999987
No 214
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.66 E-value=10 Score=39.94 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=25.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.||.|+|+|+.|.++|..|... |. ++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 5899999999999999998764 32 47777763
No 215
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=71.52 E-value=3.4 Score=42.03 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=26.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
-+|+|+|||.||+..|..|... |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 5799999999999999888764 54 48888887544
No 216
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.32 E-value=25 Score=36.82 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|.|+|+|..|..+|..+... |.. .+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~~-----~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GLA-----GEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----cEEEEEECC
Confidence 6899999999999998887653 431 368888874
No 217
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.05 E-value=3.7 Score=44.04 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
||+++|+|.-|.-+|+.|+.+.+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 68999999999999999988755 689999987
No 218
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=70.83 E-value=9.7 Score=40.52 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=88.4
Q ss_pred HHHHHHHHHhC--CCe---EEEeecCCCchHHHHHHHHhh--cCCcccc--------CCchhHHHHHHHHHHHHHHhCCC
Q 007456 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYRK--RFCMFND--------DIQGTAGVALAGLLGTVRAQGLS 317 (603)
Q Consensus 253 defv~av~~~~--P~~---~Iq~EDf~~~naf~iL~ryr~--~~~~FnD--------DiQGTaaV~lAgll~A~r~tg~~ 317 (603)
+|+.+.+.++- |++ ++|+==...-+...+|+.--- .+==||- ...+--.+|-+|++--++-.+.+
T Consensus 74 ~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~ 153 (283)
T COG0190 74 EELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGID 153 (283)
T ss_pred HHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56666666664 544 777755555555555554321 1100110 13344567889999999999998
Q ss_pred CCCCCCceEEEeCcch-hHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCccc
Q 007456 318 LTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (603)
Q Consensus 318 l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~ 396 (603)
|+. .++|++|.+. -|--+|.+|..+ + ..+.++.|+
T Consensus 154 l~G---k~~vVVGrS~iVGkPla~lL~~~-----n-------aTVtvcHs~----------------------------- 189 (283)
T COG0190 154 LRG---KNVVVVGRSNIVGKPLALLLLNA-----N-------ATVTVCHSR----------------------------- 189 (283)
T ss_pred CCC---CEEEEECCCCcCcHHHHHHHHhC-----C-------CEEEEEcCC-----------------------------
Confidence 888 9999999874 577787777663 2 235555553
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007456 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (603)
..+|.+.+++ +|++|-+-+.|+.|+.|+|+.
T Consensus 190 T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 190 TKDLASITKN--ADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred CCCHHHHhhh--CCEEEEecCCccccccccccC
Confidence 1347777877 799999999999999888874
No 219
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.76 E-value=7.9 Score=38.58 Aligned_cols=101 Identities=25% Similarity=0.304 Sum_probs=57.5
Q ss_pred eEEEeC-cchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccc--cCCcCCcccCCCHH
Q 007456 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD--PGDFMGLREGASLL 401 (603)
Q Consensus 325 riv~~G-AGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~--~~~~~~~~~~~~L~ 401 (603)
||.|+| +|..|..+|..+.+. | .+++++|++ .+ .+......+... ...........+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~--~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 63 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LE--KAEEAAAKALEELGHGGSDIKVTGADNA 63 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HH--HHHHHHHHHHhhccccCCCceEEEeChH
Confidence 799997 899999999988653 3 367777763 11 121111111100 00000000113567
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
|+++. +|++| ++. +-...+++++.++. .-...+|+.++||.+
T Consensus 64 ea~~~--aDvVi-lav-p~~~~~~~l~~l~~-~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 64 EAAKR--ADVVI-LAV-PWDHVLKTLESLRD-ELSGKLVISPVVPLA 105 (219)
T ss_pred HHHhc--CCEEE-EEC-CHHHHHHHHHHHHH-hccCCEEEEeccCce
Confidence 88876 68766 443 33345777787753 223479999999976
No 220
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=70.74 E-value=22 Score=38.24 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=81.4
Q ss_pred eEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc--cCC-CCCCChhhhccccccCCcCCcccCCCH
Q 007456 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (603)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv--~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~L 400 (603)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .+. .-+|.+...++... . ....+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~-~-----~~~~~~ 69 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDG-V-----VPTHDP 69 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCc-e-----eccCCh
Confidence 6899999 99999999877653 33100001169999974322 111 12455444333211 0 011255
Q ss_pred HHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcC-CCCCeEEecCCCCCccCCCHHHHhcccCC--
Q 007456 401 LEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHAGE-- 463 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~-~erPIIF~LSNPt~~aE~tpeda~~wt~G-- 463 (603)
.+.+++ .|++|=+.+.+ |- .=+++++.|.+ + ++.-||+-.|||.. +...-+++++.+
T Consensus 70 ~~~~~~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~~~sg~~~ 143 (324)
T TIGR01758 70 AVAFTD--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK-LAKKDCKVLVVGNPAN---TNALVLSNYAPSIP 143 (324)
T ss_pred HHHhCC--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcHH---HHHHHHHHHcCCCC
Confidence 777877 68887555443 22 12466777754 7 48899999999985 667677777632
Q ss_pred cEEEEcCCCCCcee
Q 007456 464 NIVFASGSPFENVD 477 (603)
Q Consensus 464 rai~AtGSPf~pv~ 477 (603)
+-+|.||+=.+...
T Consensus 144 ~~vig~gt~LDs~R 157 (324)
T TIGR01758 144 PKNFSALTRLDHNR 157 (324)
T ss_pred cceEEEeeehHHHH
Confidence 22788886665543
No 221
>PRK08291 ectoine utilization protein EutC; Validated
Probab=70.61 E-value=27 Score=37.21 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=59.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
++++|+|+|..|..++..+... .++ ++|.++++. . +........+.+... .. .....++.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~--~~a~~l~~~~~~~~g-~~-v~~~~d~~~a 194 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----A--AKAEAYAADLRAELG-IP-VTVARDVHEA 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----H--HHHHHHHHHHhhccC-ce-EEEeCCHHHH
Confidence 7899999999987777766542 233 468887763 1 112222222211100 00 0123678999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHH
Q 007456 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAAD 456 (603)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Ft~evv~~M~~~~~erPIIF~L-SNPt~~aE~tped 456 (603)
++. .|++|-++.. ...|+.++++.- . -|.++ |+-..+.|+.|+-
T Consensus 195 l~~--aDiVi~aT~s~~p~i~~~~l~~g------~-~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 195 VAG--ADIIVTTTPSEEPILKAEWLHPG------L-HVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred Hcc--CCEEEEeeCCCCcEecHHHcCCC------c-eEEeeCCCCCCcccCCHHH
Confidence 986 7999876543 356777776542 1 23333 3322234888865
No 222
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=70.58 E-value=11 Score=42.74 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=64.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.+|-|+|.|..|.++|..|.+. |. +++++|++ .+ ...+....-...... .....++.|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~--~~~~l~~~~~~~g~~---i~~~~s~~e~ 60 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YE--KTEEFVKKAKEGNTR---VKGYHTLEEL 60 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HH--HHHHHHHhhhhcCCc---ceecCCHHHH
Confidence 4799999999999999998764 43 58888763 11 111111100000000 0124689999
Q ss_pred hccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 007456 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (603)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt 447 (603)
++.. +|+++| ++-.++...+++++.+.....+..||.=+||=.
T Consensus 61 v~~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 61 VNSLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HhcCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 9764 588555 333467778888887755456778999999854
No 223
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=70.28 E-value=43 Score=35.77 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=89.5
Q ss_pred CCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCC
Q 007456 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
+|.++++.|+|.|..|..+|+.+..+ |+ +++.+|+.. +..+... .+. ...+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~---~~~~~~~----~~~----------~~~~ 183 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR---KSWPGVQ----SFA----------GREE 183 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC---CCCCCce----eec----------cccc
Confidence 44559999999999999999999865 44 577788632 1001110 110 1247
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHh--cccCCcEEEEcCCCC
Q 007456 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF--KHAGENIVFASGSPF 473 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~--~wt~Grai~AtGSPf 473 (603)
|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|. .++--|+|+ .-..|+.--|.--=|
T Consensus 184 l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 184 LSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP----DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred HHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC----CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCC
Confidence 9999988 688773321 12678888999983 4567776654 344444444 233566554432223
Q ss_pred CceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccC
Q 007456 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYM 526 (603)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v 526 (603)
.+-..+ .. ..-=+..|+++-|=+|-. +. .+.|...+++-+-.+.
T Consensus 254 ~~EPl~-~~-~pl~~~~nvi~TPHiag~------t~-~~~~~~~~~~n~~~~~ 297 (312)
T PRK15469 254 SREPLP-PE-SPLWQHPRVAITPHVAAV------TR-PAEAVEYISRTIAQLE 297 (312)
T ss_pred CCCCCC-CC-ChhhcCCCeEECCcCCCC------cC-HHHHHHHHHHHHHHHH
Confidence 322111 10 111245688888877621 11 2345555555555444
No 224
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=69.02 E-value=5.6 Score=42.81 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=27.5
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
|+|+|||.||..+|..+.++ +.| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 79999999999999999554 334 378999987544
No 225
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=69.01 E-value=14 Score=37.03 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=17.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAA 347 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~ 347 (603)
+||.|+|.|..+. +|.-+...|.
T Consensus 42 ~rI~~~G~GgSa~-~A~~~a~~l~ 64 (196)
T PRK10886 42 NKILCCGNGTSAA-NAQHFAASMI 64 (196)
T ss_pred CEEEEEECcHHHH-HHHHHHHHHh
Confidence 9999999998875 6666666554
No 226
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=68.69 E-value=4.2 Score=40.85 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=25.3
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+++|+|||.||+..|..|.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 58999999999999987754 353 58999975
No 227
>PRK06153 hypothetical protein; Provisional
Probab=68.49 E-value=3.5 Score=45.63 Aligned_cols=106 Identities=12% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCC-c
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG-L 394 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~-~ 394 (603)
.+|++ .||+|+|+|..|--|+++|+.. |+ ++|.++|.+=+-. .+|...--.|-.++ +.. .
T Consensus 172 ~kL~~---~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~Ve~---SNLnRQ~gaf~~~D--vGk~~ 232 (393)
T PRK06153 172 AKLEG---QRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDFLQ---HNAFRSPGAASIEE--LREAP 232 (393)
T ss_pred HHHhh---CcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEecc---cccccccccCCHhH--cCCcc
Confidence 45667 9999999999999999999876 44 6899999983222 23433211111111 000 0
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe-cCCCCC
Q 007456 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA-MSNPTM 448 (603)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~-LSNPt~ 448 (603)
+....+.+.++...|.+ ...+..++++-+..+. +-.+||- +=|...
T Consensus 233 ~KVevaa~rl~~in~~I----~~~~~~I~~~n~~~L~----~~DiV~dcvDn~~a 279 (393)
T PRK06153 233 KKVDYFKSRYSNMRRGI----VPHPEYIDEDNVDELD----GFTFVFVCVDKGSS 279 (393)
T ss_pred hHHHHHHHHHHHhCCeE----EEEeecCCHHHHHHhc----CCCEEEEcCCCHHH
Confidence 11123666666666654 3345567888877662 3456663 334433
No 228
>PLN02688 pyrroline-5-carboxylate reductase
Probab=68.16 E-value=20 Score=36.36 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=54.1
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCC-ChhhhcCeEEEE-ecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGN-NDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gl-s~~eA~~~i~lv-D~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
||.|+|.|..|..+|+.|++. |. .. .+|+++ |+. .+....+.+..- ....+..|
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~~~----~~i~v~~~r~----------~~~~~~~~~~g~-----~~~~~~~e 57 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVVPP----SRISTADDSN----------PARRDVFQSLGV-----KTAASNTE 57 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCCCc----ceEEEEeCCC----------HHHHHHHHHcCC-----EEeCChHH
Confidence 689999999999999988653 32 11 367776 542 111112221111 11246778
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
++++ .|++| ++. +....+++++.++....+..+|..+++.++
T Consensus 58 ~~~~--aDvVi-l~v-~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 58 VVKS--SDVII-LAV-KPQVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred HHhc--CCEEE-EEE-CcHHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 8775 56655 332 334467777766432344556666655544
No 229
>PRK06141 ornithine cyclodeaminase; Validated
Probab=68.13 E-value=41 Score=35.73 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=61.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.+++|+|+|..|..++..+... .+. ++|+++|+. .. ........+.+..... ....++.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~--~a~~~a~~~~~~g~~~---~~~~~~~~a 186 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PA--KAEALAAELRAQGFDA---EVVTDLEAA 186 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHHhcCCce---EEeCCHHHH
Confidence 8999999999999988776552 232 578888763 11 1222222221111010 123678999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHH
Q 007456 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAAD 456 (603)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~erPIIF~L-SNPt~~aE~tped 456 (603)
+++ .|++|-+++.+ ..|+.++++. .-.|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~-------g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP-------GTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC-------CCEEEeeCCCCcccccCCHHH
Confidence 977 79998776543 3466665542 1144444 4455666888753
No 230
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=68.04 E-value=4.8 Score=41.33 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=27.8
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
||+++|+|..|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999988775 54 689999998
No 231
>PRK07340 ornithine cyclodeaminase; Validated
Probab=67.54 E-value=44 Score=35.40 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=61.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.+++|+|+|..|...++.++.. .+. ++|+++|+. . +....|+.............++.|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~------~~a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----A------ASAAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----H------HHHHHHHHHHHhcCCeeEECCHHHH
Confidence 8999999999998888777653 233 478888874 1 1112233221100000013578999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHH
Q 007456 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAAD 456 (603)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~erPIIF~LSNPt~-~aE~tped 456 (603)
+++ .|++|-++..+ ..|+. ++| +.--|-++.--++ +.|+.++-
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~-------~g~hi~~iGs~~p~~~El~~~~ 230 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR-------AGRLVVAVGAFTPDMAELAPRT 230 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC-------CCCEEEecCCCCCCcccCCHHH
Confidence 986 79999876543 45654 222 3446777665333 66888764
No 232
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=67.34 E-value=10 Score=41.07 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=18.3
Q ss_pred eEEEeCcchhHHHHHHHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~ 344 (603)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999866
No 233
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.02 E-value=29 Score=37.22 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=71.5
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc--cCCC-CCCChhhhccccccCCcCCcccCCC
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv--~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
.||.|+|| |..|..+|-.|+.. |+-.-.=...+.|+|.+.-. .++. -+|.+...+|.... . -..+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~-----i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEI-V-----ITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCce-E-----EecC
Confidence 58999999 99999888776642 33100001379999985422 1111 24555443443211 1 1134
Q ss_pred HHHHhcccCCcEEEeecCC---CCCCC------------HHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhccc
Q 007456 400 LLEVVRKVKPHVLLGLSGV---GGVFN------------EEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHA 461 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---~g~Ft------------~evv~~M~~~~~-erPIIF~LSNPt~~aE~tpeda~~wt 461 (603)
..+.+++ .|++|=+.+. +| .| +++.+.+. +++ +.-||+-.|||.. +...-+++++
T Consensus 72 ~~~~~~d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~-~~~~~~~iiivvsNPvD---~~t~~~~k~s 142 (322)
T cd01338 72 PNVAFKD--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALN-DVASRDVKVLVVGNPCN---TNALIAMKNA 142 (322)
T ss_pred cHHHhCC--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHH-hhCCCCeEEEEecCcHH---HHHHHHHHHc
Confidence 5677877 6988844443 34 23 45566664 377 4889999999985 5666666654
No 234
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=66.97 E-value=9.9 Score=40.63 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chhHHHHHHHHHHH
Q 007456 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQA 345 (603)
Q Consensus 297 QGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GA-GsAg~GiA~li~~~ 345 (603)
-+||-++.-+++.++..+|..|++ ..+-|+|| |..|.+||+.|...
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsq---atvaivGa~G~Ia~~Iar~la~~ 190 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQ---ATVAIVGATGDIASAIARWLAPK 190 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHH---CeEEEecCCchHHHHHHHHhccc
Confidence 468888888999999999999999 99999998 99999999998663
No 235
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=66.93 E-value=19 Score=37.32 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=70.8
Q ss_pred cCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHH--hCCCe-EEEeecCCCchHHH-HHH
Q 007456 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA--RWPKA-IVQFEDFQMKWAFE-TLE 283 (603)
Q Consensus 208 gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~--~~P~~-~Iq~EDf~~~naf~-iL~ 283 (603)
-||+ .+|+.+.+| ++..+++ . +--.|+|.+.+++ ..|+. ....+|| .++|+ +++
T Consensus 19 ~~I~---vvPl~I~~~--~~~y~D~-------------~--~i~~~~~y~~~~~~~~~p~TS~ps~~~~--~~~~~~l~~ 76 (275)
T TIGR00762 19 YGIT---VVPLTVIID--GKTYRDG-------------V--DITPEEFYEKLKESKELPKTSQPSPGEF--LELYEKLLE 76 (275)
T ss_pred cCCE---EEEEEEEEC--CEEeecC-------------C--CCCHHHHHHHHHhcCCCCCcCCCCHHHH--HHHHHHHHh
Confidence 3777 999999885 3343332 1 1125677777654 23544 4444444 22322 223
Q ss_pred HHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHH--HHHhcCCChhhh
Q 007456 284 RYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA--AARMAGNNDAFA 357 (603)
Q Consensus 284 ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~--~~~~~Gls~~eA 357 (603)
+| +.+-++ |=+-.|.|-+++++...+.+.+ .+|-++=..+++.|.+.++..+ |. ++|.+.+|.
T Consensus 77 ~~-~~vi~i------~iSs~lSgty~~a~~aa~~~~~---~~i~ViDS~~~s~~~g~~v~~a~~~~-~~G~s~~eI 141 (275)
T TIGR00762 77 EG-DEVLSI------HLSSGLSGTYQSARQAAEMVDE---AKVTVIDSKSASMGLGLLVLEAAKLA-EEGKSLEEI 141 (275)
T ss_pred CC-CeEEEE------EcCCchhHHHHHHHHHHhhCCC---CCEEEECChHHHHHHHHHHHHHHHHH-HcCCCHHHH
Confidence 33 222222 2233466666666666666666 7899999999999998888765 44 589998875
No 236
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=66.84 E-value=4.9 Score=42.61 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=31.8
Q ss_pred CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|++ .+|+++|+|..|.-||+.|+.+.+ ++|.++|.+
T Consensus 16 kL~~---s~VLIvG~gGLG~EiaKnLalaGV-----------g~itI~D~d 52 (286)
T cd01491 16 KLQK---SNVLISGLGGLGVEIAKNLILAGV-----------KSVTLHDTK 52 (286)
T ss_pred HHhc---CcEEEEcCCHHHHHHHHHHHHcCC-----------CeEEEEcCC
Confidence 3455 999999999999999999988644 689999998
No 237
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=65.50 E-value=18 Score=40.84 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=60.7
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhc
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVR 405 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~ 405 (603)
|-|+|.|..|..+|..|.+. |. +++++|+.- +.....++.+... .. .....++.|+++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt~------~~~~~l~~~~~~g-~~---~~~~~s~~e~v~ 59 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRTP------EKTDEFLAEHAKG-KK---IVGAYSIEEFVQ 59 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCCH------HHHHHHHhhccCC-CC---ceecCCHHHHHh
Confidence 78999999999999999664 43 577777631 1122222111100 00 012356888886
Q ss_pred cc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007456 406 KV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (603)
Q Consensus 406 ~v-kptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN 445 (603)
.. +|+++| ++-.+|...+++++.+.....+.-||.=+||
T Consensus 60 ~l~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 60 SLERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred hcCCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 54 588666 3444677778888887543457789999998
No 238
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=64.90 E-value=10 Score=43.39 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=24.7
Q ss_pred CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+++ .+++|+|||.+|.+|+..|.+ .|. +|+++|+.
T Consensus 376 ~~~~---k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR~ 411 (529)
T PLN02520 376 PLAG---KLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANRT 411 (529)
T ss_pred CCCC---CEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 4555 999999999666665555543 452 68888873
No 239
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.81 E-value=5.5 Score=42.33 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=28.0
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999998876 54 589999987
No 240
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=64.34 E-value=15 Score=38.62 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=54.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+ ..+.-. .. .....+.......+. +
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~-~~--~~~~~~~~~~~~~~~-~ 68 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVD-SV--HGDFHLPPVQAYRSA-E 68 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEE-eC--CCCeeecCceEEcch-h
Confidence 7999999999999999887664 3 24666665421 1100 111000 00 000000000001122 2
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
.+. .+|++| ++. +..-++++++.+.....+..+|..|-|=-.
T Consensus 69 ~~~--~~D~vi-lav-K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 69 DMP--PCDWVL-VGL-KTTANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred hcC--CCCEEE-EEe-cCCChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 233 367776 443 344468888888554456778888988665
No 241
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=63.96 E-value=36 Score=37.14 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHhCC----------------C-CCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007456 298 GTAGVALAGLLGTVRAQGL----------------S-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (603)
Q Consensus 298 GTaaV~lAgll~A~r~tg~----------------~-l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~ 360 (603)
-||-++++-+|.++|-... + -.++..+||.|+|.|+.|..||+.|..+. ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg------------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFG------------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhcc------------ce
Confidence 5677778888888874321 1 13444599999999999999999987742 13
Q ss_pred EEEEecCCcccCCCCC--CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcC
Q 007456 361 FFLLDKDGLITKERKN--LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESD 434 (603)
Q Consensus 361 i~lvD~~GLv~~~r~~--l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~ 434 (603)
|. +..|.. ....+..+++. -++.|...+ .|+|+=..- .-+.|+++.+..|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~~----------~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk--- 244 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAEF----------VDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK--- 244 (336)
T ss_pred ee--------eecccCCchhhHHHhcccc----------cCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---
Confidence 43 333321 22233344432 357777766 688874432 12789999999993
Q ss_pred CCCCeEEecCCCC
Q 007456 435 SVKPAIFAMSNPT 447 (603)
Q Consensus 435 ~erPIIF~LSNPt 447 (603)
+.-+|.-.+.=.
T Consensus 245 -~g~vlVN~aRG~ 256 (336)
T KOG0069|consen 245 -DGAVLVNTARGA 256 (336)
T ss_pred -CCeEEEeccccc
Confidence 455555555433
No 242
>PRK06932 glycerate dehydrogenase; Provisional
Probab=63.65 E-value=51 Score=35.19 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=81.4
Q ss_pred CCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCC
Q 007456 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (603)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~ 398 (603)
.+|.++++.|+|-|..|..+|+++... |+ +++.+|+..- .. . .. ...
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~--------~~----~-~~--------~~~ 189 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA--------SV----C-RE--------GYT 189 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc--------cc----c-cc--------ccC
Confidence 356669999999999999999887554 44 5666665310 00 0 00 124
Q ss_pred CHHHHhcccCCcEEEee----cCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEcCCCCC
Q 007456 399 SLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474 (603)
Q Consensus 399 ~L~e~V~~vkptvLIG~----S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~AtGSPf~ 474 (603)
+|.|+++. .|+++=. ...-|.|+++.+..|. +..++.=.|.=.---|.--.+|++ +|+.--|.--=|.
T Consensus 190 ~l~ell~~--sDiv~l~~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gAaLDV~~ 261 (314)
T PRK06932 190 PFEEVLKQ--ADIVTLHCPLTETTQNLINAETLALMK----PTAFLINTGRGPLVDEQALLDALE--NGKIAGAALDVLV 261 (314)
T ss_pred CHHHHHHh--CCEEEEcCCCChHHhcccCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHH--cCCccEEEEecCC
Confidence 69999988 7988732 1224899999999993 567777766543322333333443 5665544322221
Q ss_pred ceecCCCeeec--cccccccccchhhHH
Q 007456 475 NVDLGNGKIGH--VNQANNMYLFPGIGL 500 (603)
Q Consensus 475 pv~~~~G~~~~--p~Q~NN~~iFPGigl 500 (603)
+-..+...-+. --+..|+++-|=+|-
T Consensus 262 ~EP~~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 262 KEPPEKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCCCCCChhhHhhcCCCCEEECCcccc
Confidence 11110000000 013568888887763
No 243
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=63.56 E-value=46 Score=35.83 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=72.5
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc--cCC-CCCCChhhhccccccCCcCCcccCCC
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv--~~~-r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
-||.|+|| |..|..+|-.|+.. |+-.-+=...|.|+|.+.-. .++ .-+|.+..-++.+.. . ...+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~-----i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG-----ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGV-V-----ATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-----CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCc-E-----EecC
Confidence 58999998 99999998877652 43110011279999986311 111 124444432332211 0 1235
Q ss_pred HHHHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCC-CCeEEecCCCCCccCCCHHHHhccc
Q 007456 400 LLEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSV-KPAIFAMSNPTMNAECTAADAFKHA 461 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~~e-rPIIF~LSNPt~~aE~tpeda~~wt 461 (603)
..+.+++ .|++|=+.+. +|- .=+++++.+.+ ++. .-||+--|||.. ....-+++++
T Consensus 73 ~~~~~~d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~k~s 143 (323)
T TIGR01759 73 PEEAFKD--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNK-VAKKDVKVLVVGNPAN---TNALIASKNA 143 (323)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcHH---HHHHHHHHHc
Confidence 6677877 6988844443 341 12456667754 776 889999999985 6666777766
No 244
>PRK00536 speE spermidine synthase; Provisional
Probab=63.40 E-value=10 Score=39.76 Aligned_cols=84 Identities=8% Similarity=0.047 Sum_probs=51.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC-CCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~-~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||+|+|+|-.| +++-+++. + +++.|||-++-|++ .++.++..+..|..+.-++ ..-+.+
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l-----~~~~~~ 134 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTH-----AKQLLD 134 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEE-----eehhhh
Confidence 789999999884 55555553 1 38999999998876 3455766655443222111 111222
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhh
Q 007456 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMR 431 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~ 431 (603)
.- .-+-||+|-=|+ |+++-.+.+.
T Consensus 135 ~~-~~~fDVIIvDs~----~~~~fy~~~~ 158 (262)
T PRK00536 135 LD-IKKYDLIICLQE----PDIHKIDGLK 158 (262)
T ss_pred cc-CCcCCEEEEcCC----CChHHHHHHH
Confidence 11 125799986654 7777666654
No 245
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=63.34 E-value=25 Score=39.15 Aligned_cols=83 Identities=8% Similarity=-0.001 Sum_probs=45.8
Q ss_pred HHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhcccccc
Q 007456 309 GTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388 (603)
Q Consensus 309 ~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~ 388 (603)
.++.-....|.. .|++|+|-+.-..++++.+.+ .|+.. ..+. .+.+ .+.+ +.. ...
T Consensus 300 ~~l~~~~~~l~G---krvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~-~~~~------~~~~----~~~-~~~ 355 (432)
T TIGR01285 300 DAMLDTHFFLGG---KKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAV-TTTG------SPLL----QKL-PVE 355 (432)
T ss_pred HHHHHHHHhhCC---CEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEE-eCCC------CHHH----HhC-CcC
Confidence 333333344455 999999988888999988754 46642 1111 1111 1101 000 000
Q ss_pred CCcCCcccCCCHHHHhcccCCcEEEeecC
Q 007456 389 GDFMGLREGASLLEVVRKVKPHVLLGLSG 417 (603)
Q Consensus 389 ~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (603)
.-+. .+...|++.+++.+||++||-|-
T Consensus 356 ~~~~--~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 356 TVVI--GDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred cEEe--CCHHHHHHHHhhcCCCEEEECcc
Confidence 0000 12246888999999999998773
No 246
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=62.64 E-value=6.9 Score=42.01 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.+|+|+|||.+|+.+|..|.+. |. ++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g~-------~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----GY-------QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCCC
Confidence 4799999999999999988763 43 689999874
No 247
>PRK06475 salicylate hydroxylase; Provisional
Probab=62.33 E-value=6.5 Score=42.26 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.1
Q ss_pred CceEEEeCcchhHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~ 344 (603)
.+||+|+|||.||+..|-.|.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHh
Confidence 4899999999999999977754
No 248
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=62.04 E-value=8 Score=41.53 Aligned_cols=32 Identities=41% Similarity=0.639 Sum_probs=28.0
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999875 44 689999987
No 249
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=61.76 E-value=12 Score=39.97 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
.+|||+|+|.||+..|+.|... +- .-+|.+++++.-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCCC
Confidence 5899999999999999988552 11 136888887653
No 250
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=61.57 E-value=13 Score=41.34 Aligned_cols=192 Identities=10% Similarity=0.133 Sum_probs=95.7
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEE-EEecCccccccCCCCCCcccccchh-HHHH------HHhcCCCCCceeeEEe
Q 007456 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGK-LDVY------VAAAGINPQRILPVML 220 (603)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~GmgI~iGK-l~LY------~a~gGI~P~~~lPV~L 220 (603)
|-|-...|-..+.++|... ++++. ++|.++.+=-|-..+...+-|.+.- ...+ ..+ ||. .+...
T Consensus 204 G~~~~~~d~~el~~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~-GiP---~~~~~- 275 (456)
T TIGR01283 204 GEFNVAGEFWHVKPLLEKL---GIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKY-GIP---YFEGS- 275 (456)
T ss_pred cCCCCcccHHHHHHHHHHc---CCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHc-CCC---EEecC-
Confidence 4444445666788888864 56765 5677766666555665555554321 1112 122 343 22111
Q ss_pred eccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhH
Q 007456 221 DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300 (603)
Q Consensus 221 DvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTa 300 (603)
++|+ +-.++|+.++.+.+..- ++ ..++-.++++.+.+
T Consensus 276 --------------~~G~-----------~~T~~~L~~Ia~~lg~~-----~~-~~~~~~~i~~e~~~------------ 312 (456)
T TIGR01283 276 --------------FYGI-----------EDTSKALRDIADLFGDE-----EL-LKRTEELIAREEAK------------ 312 (456)
T ss_pred --------------CCcH-----------HHHHHHHHHHHHHhCCh-----HH-HHHHHHHHHHHHHH------------
Confidence 1222 23677777777776421 00 01233444444443
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChh
Q 007456 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (603)
Q Consensus 301 aV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~ 380 (603)
+..++.-....|.. .|+++++.+.-..++++++.+ .|+. +..+... ....++....
T Consensus 313 ------~~~~l~~~~~~L~G---krv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l 368 (456)
T TIGR01283 313 ------IRPALEPYRERLKG---KKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARI 368 (456)
T ss_pred ------HHHHHHHHHHHcCC---CEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHH
Confidence 23333333344556 999998888888888887654 4663 3333221 1111111111
Q ss_pred hhccccccCCcCCcccCCCHHHHhcccCCcEEEeec
Q 007456 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (603)
Q Consensus 381 k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (603)
+..+ .+........+...+.+.++..+||++||-|
T Consensus 369 ~~~~-~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 369 RELM-GEGTVMLDDANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred HHHc-CCCeEEEeCCCHHHHHHHHhhcCCCEEEEcc
Confidence 1111 1100000001224588888999999999854
No 251
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=61.34 E-value=8.4 Score=38.59 Aligned_cols=35 Identities=17% Similarity=0.463 Sum_probs=28.3
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
|.++|+||+|+|..|..-++.|+++. .+|.+++.+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g------------a~VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG------------AQLRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC------------CEEEEEcCC
Confidence 44499999999999999998888752 268888874
No 252
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=61.33 E-value=27 Score=36.77 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=24.8
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999988764 3 356777764
No 253
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=61.15 E-value=34 Score=36.66 Aligned_cols=148 Identities=15% Similarity=0.185 Sum_probs=82.9
Q ss_pred CCCe-EEEeecCCCchHHHHHHHHhhcCCccccCC---chhHHHHHHHHHHHHHHh---------CC---------CCCC
Q 007456 263 WPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTD 320 (603)
Q Consensus 263 ~P~~-~Iq~EDf~~~naf~iL~ryr~~~~~FnDDi---QGTaaV~lAgll~A~r~t---------g~---------~l~d 320 (603)
.|+. +|+.-=.+..| +.+-.--+.-+.+.|--- ..+|=-+++.+|+.+|-. |. .-.+
T Consensus 64 ~p~Lk~I~~~g~G~d~-id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~ 142 (323)
T PRK15409 64 MPKLRAASTISVGYDN-FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTD 142 (323)
T ss_pred CCCCeEEEECceeccc-ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCC
Confidence 3554 45444344333 222222223355555322 345566777777777631 10 0124
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCH
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L 400 (603)
|.++++.|+|.|..|..+|+.+..+ -|+ ++...|+.. . .+....+ . ....+|
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~----fgm-------~V~~~~~~~---~-----~~~~~~~--~-------~~~~~l 194 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFG----FNM-------PILYNARRH---H-----KEAEERF--N-------ARYCDL 194 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhc----CCC-------EEEEECCCC---c-----hhhHHhc--C-------cEecCH
Confidence 5669999999999999999987522 243 466566531 0 0000011 0 012479
Q ss_pred HHHhcccCCcEEEee-c---CCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007456 401 LEVVRKVKPHVLLGL-S---GVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (603)
Q Consensus 401 ~e~V~~vkptvLIG~-S---~~~g~Ft~evv~~M~~~~~erPIIF~LSN 445 (603)
.|+++. .|+++=. . ..-|.|+++.++.|. +.-++.=.|.
T Consensus 195 ~ell~~--sDvv~lh~plt~~T~~li~~~~l~~mk----~ga~lIN~aR 237 (323)
T PRK15409 195 DTLLQE--SDFVCIILPLTDETHHLFGAEQFAKMK----SSAIFINAGR 237 (323)
T ss_pred HHHHHh--CCEEEEeCCCChHHhhccCHHHHhcCC----CCeEEEECCC
Confidence 999887 6887632 1 113889999999993 5667776554
No 254
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=60.84 E-value=7 Score=42.45 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=23.8
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 69999999999999988765 354 36666654
No 255
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=60.58 E-value=4.2 Score=43.00 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
++|.. .+|+|+|+|.-|.-+|..|+.+.+ ++|.++|.+
T Consensus 22 ~KL~~---SrVLVVG~GGLGsEVAKnLaLAGV-----------GsItIvDdD 59 (287)
T PTZ00245 22 QQLMH---TSVALHGVAGAAAEAAKNLVLAGV-----------RAVAVADEG 59 (287)
T ss_pred HHHhh---CeEEEECCCchHHHHHHHHHHcCC-----------CeEEEecCC
Confidence 44556 999999999999999998887654 689999987
No 256
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=60.49 E-value=4.9 Score=41.43 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=28.2
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
..+..|+|+|||.||+..|-.+.+ .|+ ++.++|++--
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCCC
Confidence 334789999999999999887644 454 5888998643
No 257
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=60.40 E-value=9.2 Score=36.73 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=27.2
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
|++.|+||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 4459999999999999988888775 2 267777643
No 258
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=60.13 E-value=8.7 Score=36.23 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=28.2
Q ss_pred EEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 327 v~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
+|+|+|.+|+.+++.|++.. .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999999864 1122358999999755
No 259
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=60.06 E-value=29 Score=36.56 Aligned_cols=124 Identities=22% Similarity=0.294 Sum_probs=71.5
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC-CcccCCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~-GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
|.|+|||..|..+|-.++. .|+. ..+.++|.+ .++..-..+|.+....+. .. .. ....+ .+.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~~DL~~~~~~~~-~~-~i---~~~~~-~~~l 64 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDALDLSHASAFLA-TG-TI---VRGGD-YADA 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHhHHHhccccC-CC-eE---EECCC-HHHh
Confidence 5799999999988865554 3553 479999973 221111124555443321 11 10 01234 4567
Q ss_pred cccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEEEE
Q 007456 405 RKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVFA 468 (603)
Q Consensus 405 ~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt--~Grai~A 468 (603)
++ .|++|=+.+. +|- .=+++++.+. ++++.-+|+=.|||.. +..+-+.+++ +-+-+|+
T Consensus 65 ~~--aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~-~~~p~~~viv~sNP~d---~~~~~~~~~sg~~~~kviG 138 (300)
T cd00300 65 AD--ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLK-KYGPDAIILVVSNPVD---ILTYVAQKLSGLPKNRVIG 138 (300)
T ss_pred CC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEccChHH---HHHHHHHHHhCcCHHHEEe
Confidence 77 6887633332 331 1145666774 4889999999999985 5555565553 1234666
Q ss_pred cCC
Q 007456 469 SGS 471 (603)
Q Consensus 469 tGS 471 (603)
+|.
T Consensus 139 ~gt 141 (300)
T cd00300 139 SGT 141 (300)
T ss_pred cCC
Confidence 653
No 260
>PRK06184 hypothetical protein; Provisional
Probab=59.88 E-value=8.2 Score=43.02 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=26.7
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
+..|+|+|||.+|+..|-+|.. .|+ ++.++|+.-
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 4789999999999999988765 455 477777753
No 261
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=59.68 E-value=12 Score=41.18 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=26.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 4899999999999999998652 11 1368888875
No 262
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=59.54 E-value=8.7 Score=43.03 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.4
Q ss_pred CceEEEeCcchhHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~ 344 (603)
..+|+|+|||.||+..|..+.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHh
Confidence 4899999999999999888765
No 263
>PRK07236 hypothetical protein; Provisional
Probab=59.47 E-value=8.8 Score=41.00 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.3
Q ss_pred CceEEEeCcchhHHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (603)
..+|+|+|||.||+..|..|.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC
Confidence 38999999999999999888764
No 264
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=59.37 E-value=25 Score=43.63 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred CceEEEeCcchhHHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (603)
-.+|||.|+|..|.|.++++...
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~l 225 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLL 225 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhc
Confidence 48999999999999999988765
No 265
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=59.32 E-value=7.9 Score=41.51 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=24.1
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.|+|+|||.||...|..+.+ .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 48999999999999987765 354 46677766
No 266
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=59.00 E-value=71 Score=34.17 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=63.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.++.|+|+|.-|-.-++.+... .. -++|+++|+. .+ ........+.+...+. ....+..|+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~----~~------~~~v~V~~r~----~~--~~~~~~~~~~~~g~~v---~~~~~~~ea 189 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV----FD------LEEVSVYCRT----PS--TREKFALRASDYEVPV---RAATDPREA 189 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEECCC----HH--HHHHHHHHHHhhCCcE---EEeCCHHHH
Confidence 7899999999776655444331 11 2678888873 11 1122222221111110 124689999
Q ss_pred hcccCCcEEEeecC-CCCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHH
Q 007456 404 VRKVKPHVLLGLSG-VGGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 457 (603)
Q Consensus 404 V~~vkptvLIG~S~-~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~-~aE~tpeda 457 (603)
++. .||+|-++. ....|..+++| +..-|-++.-.++ +.|+.++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~-------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS-------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC-------CCCEEEecCCCCcccccCCHHHH
Confidence 987 799986653 34678887775 3446888876655 679998743
No 267
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=58.68 E-value=34 Score=35.80 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=51.0
Q ss_pred CceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCC-cCCcccCCCH
Q 007456 323 DQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD-FMGLREGASL 400 (603)
Q Consensus 323 ~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~-~~~~~~~~~L 400 (603)
+.+||++.. ++.++|- +..+|+ .-|++ ++++|+.+ ..+++.-..+|....+ +++..-..||
T Consensus 4 ~i~iVLVep~~~gNIG~---vARaMK-NfGl~------eL~LV~Pr-------~~~~eeA~a~A~gA~dile~A~i~~tL 66 (242)
T COG0565 4 NIRIVLVEPSHPGNIGS---VARAMK-NFGLS------ELRLVNPR-------AGLDEEARALAAGARDILENAKIVDTL 66 (242)
T ss_pred ccEEEEEcCCCCccHHH---HHHHHH-hCCcc------eEEEECCC-------CCCCHHHHHHhccchhhhccCeeecCH
Confidence 377877764 5666775 345677 68996 59988875 2345555555543222 2222235799
Q ss_pred HHHhcccCCcEEEeecCCC
Q 007456 401 LEVVRKVKPHVLLGLSGVG 419 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~ 419 (603)
.|+|.. .+.+||+|+..
T Consensus 67 ~eAl~d--~~~v~aTtar~ 83 (242)
T COG0565 67 EEALAD--CDLVVATTARS 83 (242)
T ss_pred HHHhcC--CCEEEEecccc
Confidence 999998 79999999653
No 268
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=58.23 E-value=13 Score=40.34 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=27.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
+||||+|+|.||+..|..|.+. |-. -+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~~-----~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NKE-----LEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CCC-----CcEEEEECCCc
Confidence 3899999999999999887553 211 26888888753
No 269
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=57.84 E-value=9.3 Score=39.96 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=26.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..+-|+|||-.|-|||+....+ |+ ++|++|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4578999999999999987764 66 69999985
No 270
>PLN02852 ferredoxin-NADP+ reductase
Probab=57.82 E-value=11 Score=42.80 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.||+|+|||.||+..|..|... ..|. +|.++|+.
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~---~~g~-------~Vtv~E~~ 60 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKA---HDGA-------RVDIIERL 60 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhh---CCCC-------eEEEEecC
Confidence 8999999999999999988763 1243 68889886
No 271
>PRK06823 ornithine cyclodeaminase; Validated
Probab=57.58 E-value=85 Score=33.63 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=65.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.++.++|+|.-+...++.++.. ..+ ++|+++|+. .. ....+...+.+...+ .....+.+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~--~a~~~~~~~~~~~~~---v~~~~~~~~a 189 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ET--ALEEYRQYAQALGFA---VNTTLDAAEV 189 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH--HHHHHHHHHHhcCCc---EEEECCHHHH
Confidence 7899999999888777766553 122 578887774 11 112111111111111 1124689999
Q ss_pred hcccCCcEEEeecC-CCCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHHh
Q 007456 404 VRKVKPHVLLGLSG-VGGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAF 458 (603)
Q Consensus 404 V~~vkptvLIG~S~-~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~-~aE~tpeda~ 458 (603)
++. .||++-+++ ....|..++++. .-.|-+...-++ +.|+.++-..
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~~-------G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQP-------GTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcCC-------CcEEEecCCCCcccccCCHHHHh
Confidence 988 799997654 346788888763 345777765443 6699987543
No 272
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=57.45 E-value=11 Score=37.67 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=26.8
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
|++.++||+|+|..|.-.++.|.++ | .+|++++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 4449999999999998888887764 2 26888864
No 273
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=57.37 E-value=9.6 Score=40.32 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=26.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|+|+|||.||+..|-+|...- +.|. ++.++|++
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 67999999999999998876630 1254 57777773
No 274
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=57.34 E-value=11 Score=38.46 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=27.5
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
.|+|+|||-+|+.+|..|.+ .|. ++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G~-------~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RGH-------SVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TTS-------EEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeeccc
Confidence 38999999999999998877 353 7999999943
No 275
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.31 E-value=9.8 Score=39.80 Aligned_cols=32 Identities=31% Similarity=0.645 Sum_probs=25.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.||.|+|||..|.|||.+++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 4899999999999999988764 43 57777653
No 276
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=57.18 E-value=8.1 Score=42.28 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=24.9
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..||||+|+|.||+..|+.|.. . .-+|.++|.+-
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~~ 43 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPRN 43 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCCC
Confidence 3899999999999988765521 1 13588888753
No 277
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=57.11 E-value=9.7 Score=44.26 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=27.0
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 38999999999999999888653 43 48888875
No 278
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=56.83 E-value=10 Score=42.25 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=27.3
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..+|+|+|+|.||+..|..+.. .|. ++.++|+..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~~ 176 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERAD 176 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 3799999999999999887754 353 588998763
No 279
>PRK07233 hypothetical protein; Provisional
Probab=56.78 E-value=8.5 Score=41.01 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=25.5
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
||+|+|||-||+..|..|.+. |. ++.+++++-
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G~-------~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----GH-------EVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEEeCC
Confidence 689999999999999887653 43 577887763
No 280
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=56.76 E-value=5.3 Score=42.98 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999875
No 281
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=55.87 E-value=16 Score=32.11 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=47.0
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
||.|+|+|..|......+... ..+. +=..++|++ .+.-+.+++... .+...|+.|.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~----------~~~~~~~~~~~~----~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPD----------PERAEAFAEKYG----IPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSS----------HHHHHHHHHHTT----SEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCC----------HHHHHHHHHHhc----ccchhHHHHHH
Confidence 899999999976665444432 0121 224456653 111112222211 12357899999
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007456 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (603)
Q Consensus 405 ~~vkptvLIG~S~~~g~Ft~evv~~M~~ 432 (603)
+.-++|+++ +++ +.....++++...+
T Consensus 59 ~~~~~D~V~-I~t-p~~~h~~~~~~~l~ 84 (120)
T PF01408_consen 59 ADEDVDAVI-IAT-PPSSHAEIAKKALE 84 (120)
T ss_dssp HHTTESEEE-EES-SGGGHHHHHHHHHH
T ss_pred HhhcCCEEE-Eec-CCcchHHHHHHHHH
Confidence 987899887 444 44556666666544
No 282
>PRK08163 salicylate hydroxylase; Provisional
Probab=55.75 E-value=10 Score=40.31 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.6
Q ss_pred ceEEEeCcchhHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (603)
.+|+|+|||.||+..|-.|..
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 689999999999999987755
No 283
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.63 E-value=12 Score=41.03 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=20.9
Q ss_pred CCceEEEeCcchhHHHHHHHHHHH
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~ 345 (603)
.+.+++|+|+|.+|.++|+.|...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~ 27 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL 27 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC
Confidence 448999999999999999988764
No 284
>PRK06847 hypothetical protein; Provisional
Probab=55.61 E-value=11 Score=39.67 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=24.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|+|+|||.||+..|..|.. .|+ ++.++++.
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~-----~g~-------~v~v~E~~ 36 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRR-----AGI-------AVDLVEID 36 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 679999999999999988755 355 36666654
No 285
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=55.58 E-value=11 Score=41.76 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=26.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 899999999999999988855 353 68888875
No 286
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=55.55 E-value=11 Score=41.89 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=28.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
-+++|+|||.+|+++|.-|.++ |.+ ++.++|+..=+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~~~ 44 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRDDV 44 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccCCc
Confidence 6799999999999999888775 443 38888887533
No 287
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=55.53 E-value=65 Score=35.33 Aligned_cols=193 Identities=10% Similarity=0.148 Sum_probs=95.6
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEE-EEecCccccccCCCCCCcccccchh-HHHHH------HhcCCCCCceeeEEe
Q 007456 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGK-LDVYV------AAAGINPQRILPVML 220 (603)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~GmgI~iGK-l~LY~------a~gGI~P~~~lPV~L 220 (603)
|-|....|-..+.++|+.. ++++. +.+.++.+=-+-..+...+-|..+. ...+. -+ |+. .+.+.
T Consensus 165 g~~~~~~d~~el~~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~~~f-Gip---~~~~~- 236 (410)
T cd01968 165 GEFNVAGELWGVKPLLEKL---GIRVLASITGDSRVDEIRRAHRAKLNVVQCSKSMIYLARKMEEKY-GIP---YIEVS- 236 (410)
T ss_pred CCCCCcccHHHHHHHHHHc---CCeEEEEeCCCCCHHHHHhhhhCcEEEEEchhHHHHHHHHHHHHh-CCC---eEecC-
Confidence 3344445666788888864 46665 4667756555555555555554321 22221 12 444 22111
Q ss_pred eccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhH
Q 007456 221 DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300 (603)
Q Consensus 221 DvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTa 300 (603)
++|+ +-.++|++.+.+.+..-.+ ...+-..+++.|.++
T Consensus 237 --------------p~G~-----------~~t~~~l~~ia~~~g~~~~------~~~~~~~i~~e~~~~----------- 274 (410)
T cd01968 237 --------------FYGI-----------RDTSKSLRNIAELLGDEEL------IERTEELIAREEARL----------- 274 (410)
T ss_pred --------------cCcH-----------HHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHH-----------
Confidence 1222 2257777777776631100 123334555555442
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChh
Q 007456 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (603)
Q Consensus 301 aV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~ 380 (603)
..++.-....|.. .|++|+|.+.-..++++++.+ .|+. +..+-+. ....++....
T Consensus 275 -------~~~l~~~~~~l~g---krv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~~~~~~~ 329 (410)
T cd01968 275 -------RPELAPYRARLEG---KKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTKEDYERI 329 (410)
T ss_pred -------HHHHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCHHHHHHH
Confidence 2233333334456 999999988888898886643 5773 3333221 1111111111
Q ss_pred hhccccccCCcCCcccCCCHHHHhcccCCcEEEeecC
Q 007456 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG 417 (603)
Q Consensus 381 k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (603)
+..+ .....+....+...+.+.++..+||++||-|.
T Consensus 330 ~~~~-~~~~~v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 330 KELL-GEGTVIVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred HHHh-CCCcEEEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 1111 11111100011234778889999999999764
No 288
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=54.96 E-value=12 Score=40.62 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=28.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCccc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~ 371 (603)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+-
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G 39 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPG 39 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCC
Confidence 5699999999999999988775 43 577888865553
No 289
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=54.80 E-value=42 Score=32.94 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=89.5
Q ss_pred ccCCCccccccCChhhHHHHHhcCCCCCceEEEEecC--ccccccCCCCCC--cccccchhHHHHHHhcCCCCCceeeEE
Q 007456 144 FRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG--SRILGLGDLGVQ--GIGIPIGKLDVYVAAAGINPQRILPVM 219 (603)
Q Consensus 144 ~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI~P~~~lPV~ 219 (603)
-+++.|+-++..|.....+.+..+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|+
T Consensus 53 ~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v~ 126 (257)
T PF13407_consen 53 SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKVL 126 (257)
T ss_dssp HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEEE
T ss_pred HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceEE
Confidence 4568999999999877777777766677877776544 222222233432 67777777777776655 4444
Q ss_pred eeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCe-EEE---eecCCCchHHHHHHHHhhcCCccccC
Q 007456 220 LDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQ---FEDFQMKWAFETLERYRKRFCMFNDD 295 (603)
Q Consensus 220 LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~Iq---~EDf~~~naf~iL~ryr~~~~~FnDD 295 (603)
+=.|.-+ .....+..+-|.++++. +|++ .+. +.++....+.+.++++-...+ -|=
T Consensus 127 ~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~~ 185 (257)
T PF13407_consen 127 ILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VDA 185 (257)
T ss_dssp EEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EEE
T ss_pred eccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ceE
Confidence 4343221 12223457788888887 8887 443 347888888877776655432 111
Q ss_pred CchhHHHHHHHHHHHHHHhCC
Q 007456 296 IQGTAGVALAGLLGTVRAQGL 316 (603)
Q Consensus 296 iQGTaaV~lAgll~A~r~tg~ 316 (603)
|=.+....+-|++.|++-.|+
T Consensus 186 i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEESSHHHHHHHHHHHHHTTC
T ss_pred EEeCCChHHHHHHHHHHHcCC
Confidence 222233344478888998888
No 290
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=54.47 E-value=12 Score=41.69 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.0
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+||||+|+|-+|+-.|..+.... + .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 489999999999999998887642 1 1368999986
No 291
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=54.27 E-value=12 Score=30.85 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=23.8
Q ss_pred EeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 328 ~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
|+|||.+|+..|..|.+. | .+|.++|++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 789999999999888663 3 379999987543
No 292
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=54.25 E-value=9.6 Score=40.77 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.+|+|+|||.||+..|-.|.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~ 40 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDS 40 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcC
Confidence 6799999999999999888653
No 293
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=54.21 E-value=32 Score=35.53 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.8
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
||.|+|+|..|..+|..+... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988753 43 57777765
No 294
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=54.11 E-value=37 Score=35.09 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=25.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.||.|+|.|..|..+|..+... |. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-----g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-----GY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 5799999999999999988653 42 46777764
No 295
>PRK09126 hypothetical protein; Provisional
Probab=53.97 E-value=11 Score=39.95 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=19.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
..|+|+|||.||+..|-.|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~ 25 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS 25 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC
Confidence 6799999999999999887653
No 296
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=53.87 E-value=11 Score=40.13 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=24.8
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
|+|+|||.||+.+|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 8999999999999977653 354 688999764
No 297
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=53.85 E-value=12 Score=42.64 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=26.0
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3899999999999999887754 353 48888864
No 298
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.75 E-value=56 Score=29.88 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=44.7
Q ss_pred CCCCcccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEE
Q 007456 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIV 268 (603)
Q Consensus 189 lG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~I 268 (603)
.|.+|-...--+..+-......+|+. |+|-+||| |.++ +.+-++|.+-+++|++.++..+|++.|
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~N------D~~~------~~~~~~~~~~~~~~i~~i~~~~p~~~i 82 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTN------DLVL------NRDPDTAPDRLRALIDQMRAANPDVKI 82 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCc------cccc------CCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 44455555555555444455566644 46788997 5433 256789999999999999999998744
Q ss_pred E
Q 007456 269 Q 269 (603)
Q Consensus 269 q 269 (603)
-
T Consensus 83 i 83 (157)
T cd01833 83 I 83 (157)
T ss_pred E
Confidence 4
No 299
>PRK11445 putative oxidoreductase; Provisional
Probab=53.30 E-value=12 Score=39.61 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=23.9
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.|+|+|||.||...|..|... . ++.++|++-
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~------------~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-M------------KVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-C------------CEEEEECCC
Confidence 589999999999999877553 2 477777653
No 300
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=53.19 E-value=9.2 Score=40.36 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.6
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
+|||+|+|.||+..|+.+..... ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCC
Confidence 58999999999988887754211 1247999997754
No 301
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=53.17 E-value=2.3e+02 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=21.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
++++|+|+|..|+..+.++...+ |- .+++.+|+
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 79999999987766655554321 21 36887775
No 302
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=53.15 E-value=12 Score=37.32 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=25.7
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
.|+|+|||.||+..|-.|.+ .|+ ++.++|++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 38999999999999977643 465 5888888743
No 303
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.98 E-value=74 Score=33.69 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=71.4
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
||.|+|+|..|..+|..+.. .|+. ..++++|.+-=..++. .++.+.. +|..+. .. ...+. +.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~~-----~ev~l~D~~~~~~~g~a~dl~~~~-~~~~~~-~i----~~~d~-~~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGLA-----SEIVLVDINKAKAEGEAMDLAHGT-PFVKPV-RI----YAGDY-AD 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCCC-----CEEEEEECCchhhhhHHHHHHccc-cccCCe-EE----eeCCH-HH
Confidence 79999999999999887665 3542 4799999741101100 0122221 221111 00 11344 45
Q ss_pred hcccCCcEEEeecCCC---C-CC----------CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcEEE
Q 007456 404 VRKVKPHVLLGLSGVG---G-VF----------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 467 (603)
Q Consensus 404 V~~vkptvLIG~S~~~---g-~F----------t~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~--Grai~ 467 (603)
+++ .|+.|=+.+.+ | .. =+++++.+.+ ++..-+|+-.+||. +....-+++.++ -+-+|
T Consensus 65 l~~--aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~vi 138 (308)
T cd05292 65 CKG--ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVI 138 (308)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHee
Confidence 666 57766333332 2 11 1356677643 78889999999997 466666666651 23467
Q ss_pred EcCCCC
Q 007456 468 ASGSPF 473 (603)
Q Consensus 468 AtGSPf 473 (603)
.+|.-.
T Consensus 139 G~gt~L 144 (308)
T cd05292 139 GSGTVL 144 (308)
T ss_pred cccchh
Confidence 776554
No 304
>PLN02268 probable polyamine oxidase
Probab=52.73 E-value=5.3 Score=43.27 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.0
Q ss_pred eEEEeCcchhHHHHHHHHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~ 345 (603)
+|+|+|||-||+..|..|.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~ 22 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999999764
No 305
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=52.46 E-value=30 Score=35.27 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 305 Agll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
+..+.|++..+.. .. .+++|+|+|+.|...+.+.. ..|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~~-~g---~~VlV~G~G~vG~~~~~~ak-----~~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KG---RRVLVVGAGMLGLTAAAAAA-----AAGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CC---CEEEEECCCHHHHHHHHHHH-----HcCC------CEEEEECC
Confidence 3345566555443 45 89999999876655444332 2354 35877764
No 306
>PRK12831 putative oxidoreductase; Provisional
Probab=52.28 E-value=13 Score=41.41 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=27.0
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..+|+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 38999999999999999888763 43 58888864
No 307
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=52.17 E-value=58 Score=35.93 Aligned_cols=98 Identities=12% Similarity=0.218 Sum_probs=51.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCCh-hhh--ccccccCCcCCcccCCCH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP-AAA--PFAKDPGDFMGLREGASL 400 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~-~k~--~fa~~~~~~~~~~~~~~L 400 (603)
.|++|+|...-..++++.|.+. |+.. ..+.. + +.. +...+ .+. .......+.-...+...+
T Consensus 300 k~v~i~~~~~~~~~l~~~L~e~-----G~~v----~~v~~-~-----~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~~el 363 (428)
T cd01965 300 KRVAIAGDPDLLLGLSRFLLEM-----GAEP----VAAVT-G-----TDN-PPFEKRMELLASLEGIPAEVVFVGDLWDL 363 (428)
T ss_pred CEEEEEcChHHHHHHHHHHHHc-----CCcc----eEEEE-c-----CCC-chhHHHHHHhhhhcCCCceEEECCCHHHH
Confidence 9999999998889998888764 4432 11111 1 111 11100 000 000000000001233568
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
++.++..|||++||-|- .+.+-+.+ ..|.| ..|.|..
T Consensus 364 ~~~i~~~~pdliig~~~-----~~~~a~~~-----~ip~i-~~~~P~~ 400 (428)
T cd01965 364 ESLAKEEPVDLLIGNSH-----GRYLARDL-----GIPLV-RVGFPIF 400 (428)
T ss_pred HHHhhccCCCEEEECch-----hHHHHHhc-----CCCEE-EecCCch
Confidence 88899999999999773 23333333 46764 4566653
No 308
>PRK06046 alanine dehydrogenase; Validated
Probab=52.14 E-value=1.4e+02 Score=31.89 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=62.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.++.|+|+|..|...++.+... .++ ++++++|++- . ........+.+.. .+. .....++.|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~---~---~~~~~~~~~~~~~-~~~-v~~~~~~~~~ 191 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK---S---SAEKFVERMSSVV-GCD-VTVAEDIEEA 191 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH---H---HHHHHHHHHHhhc-Cce-EEEeCCHHHH
Confidence 7899999999987777666432 233 6788888852 1 1222222221110 000 0123578888
Q ss_pred hcccCCcEEEeecC-CCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHH
Q 007456 404 VRKVKPHVLLGLSG-VGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADA 457 (603)
Q Consensus 404 V~~vkptvLIG~S~-~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~tpeda 457 (603)
++ .|+++-++. ....|..++++. .-.|-++.- -..+.|+.++-.
T Consensus 192 l~---aDiVv~aTps~~P~~~~~~l~~-------g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 192 CD---CDILVTTTPSRKPVVKAEWIKE-------GTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred hh---CCEEEEecCCCCcEecHHHcCC-------CCEEEecCCCCCccccCCHHHH
Confidence 85 698887654 346788887763 224667754 334789998743
No 309
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=52.01 E-value=13 Score=41.16 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=26.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~-----~g~-------~V~lie~~ 172 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLAR-----KGY-------DVTIFEAR 172 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccC
Confidence 799999999999998887744 343 68888875
No 310
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=51.95 E-value=95 Score=34.66 Aligned_cols=121 Identities=24% Similarity=0.324 Sum_probs=80.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC
Q 007456 293 NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (603)
Q Consensus 293 nDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~ 372 (603)
.|.-.||+--++-|++.|..+. +.- ..+|+.|=|--|-|||..+... |. ++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~RaTn~l---iaG---K~vVV~GYG~vGrG~A~~~rg~-----GA-------~ViVtEv------ 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILRATNVL---LAG---KNVVVAGYGWVGRGIAMRLRGM-----GA-------RVIVTEV------ 240 (420)
T ss_pred cccccccchhHHHHHHhhhcee---ecC---ceEEEecccccchHHHHHhhcC-----CC-------eEEEEec------
Confidence 3677899999999998765543 444 8999999999999999876543 22 4553322
Q ss_pred CCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCC-CccC
Q 007456 373 ERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT-MNAE 451 (603)
Q Consensus 373 ~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt-~~aE 451 (603)
+|.+.-=|.- ++ -.--++.||++. .|++|=+++.-++.+.|.++.|. +. .|. +|-- -.-|
T Consensus 241 -----DPI~AleA~M----dG-f~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----Dg-aIl--~N~GHFd~E 301 (420)
T COG0499 241 -----DPIRALEAAM----DG-FRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DG-AIL--ANAGHFDVE 301 (420)
T ss_pred -----CchHHHHHhh----cC-cEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CC-eEE--eccccccee
Confidence 2221111110 00 012468999988 79999999999999999999993 34 343 3322 2336
Q ss_pred CCHHH
Q 007456 452 CTAAD 456 (603)
Q Consensus 452 ~tped 456 (603)
+..+.
T Consensus 302 I~~~~ 306 (420)
T COG0499 302 IDVAG 306 (420)
T ss_pred ccHHH
Confidence 66654
No 311
>PRK06753 hypothetical protein; Provisional
Probab=51.79 E-value=13 Score=39.21 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.1
Q ss_pred eEEEeCcchhHHHHHHHHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~ 345 (603)
+|+|+|||.||+..|..|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~ 22 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ 22 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999887553
No 312
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=51.48 E-value=14 Score=39.11 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=26.8
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.++|+|+|+|.||+..|..+.+ .|. ++.++|+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 50 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLAC-----LGY-------EVHVYDKL 50 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 3799999999999998887764 343 68889986
No 313
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=51.28 E-value=27 Score=36.65 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 308 l~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
+.|++..+.. .. ++++|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 159 ~~al~~~~~~-~g---~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 159 IHAAHQAGDL-QG---KRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHhcCCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 4455544432 45 899999998777655543332 343 36777765
No 314
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=51.17 E-value=13 Score=45.92 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=27.2
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 48999999999999999998653 53 58888875
No 315
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=51.15 E-value=77 Score=35.00 Aligned_cols=110 Identities=11% Similarity=0.185 Sum_probs=70.7
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCC--C---C--CCChhhhccccc--cCCcCC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--R---K--NLDPAAAPFAKD--PGDFMG 393 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~--r---~--~l~~~k~~fa~~--~~~~~~ 393 (603)
..||.++|+|.=|..||..+-.--. +.+.-+..=++|.++.. ..+ + + +-+++..+|... -++ +
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~--N 92 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPE--N 92 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCC--C
Confidence 4899999999999999999977533 34455666789998864 222 1 0 112222233321 111 0
Q ss_pred cccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007456 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (603)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LS 444 (603)
.....+|.|+++. +|+||=+ .|--|+..+++.+.....++..-..|+
T Consensus 93 vvAv~dl~ea~~d--ADilvf~--vPhQf~~~ic~~l~g~vk~~~~aISL~ 139 (372)
T KOG2711|consen 93 VVAVPDLVEAAKD--ADILVFV--VPHQFIPRICEQLKGYVKPGATAISLI 139 (372)
T ss_pred eEecchHHHHhcc--CCEEEEe--CChhhHHHHHHHHhcccCCCCeEEEee
Confidence 1124789999998 7998843 478899999999976444555444444
No 316
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=51.12 E-value=39 Score=35.03 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=51.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~G-ls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
+||.|+|+|..|..+|..+... | ++ ..+++++|++.- +.+......+. .. ....+..|
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~~-----~~~~~l~~~~~--~~-----~~~~~~~e 60 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSKN-----EHFNQLYDKYP--TV-----ELADNEAE 60 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCcH-----HHHHHHHHHcC--Ce-----EEeCCHHH
Confidence 4799999999999999887653 3 22 136777776410 00111111110 00 01235566
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007456 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~ 448 (603)
+++. +|++| ++. +....+++++.+.....+..+|..++|-.+
T Consensus 61 ~~~~--aDvVi-lav-pp~~~~~vl~~l~~~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 61 IFTK--CDHSF-ICV-PPLAVLPLLKDCAPVLTPDRHVVSIAAGVS 102 (277)
T ss_pred HHhh--CCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 6654 56665 443 333345666655321223445555666544
No 317
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=51.02 E-value=15 Score=39.42 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=27.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..|+|+|||.+|+.+|-.|... ..| .++.++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~---~~g-------~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQER---YPG-------ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHh---CCC-------CeEEEEeCCC
Confidence 4699999999999999888764 113 3689999863
No 318
>PRK07045 putative monooxygenase; Reviewed
Probab=50.96 E-value=14 Score=39.41 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=18.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
-+|+|+|||.||+..|-.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 5799999999999999777653
No 319
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=50.77 E-value=14 Score=43.14 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=26.4
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..||+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 37999999999999999888653 43 57788865
No 320
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=50.68 E-value=8.7 Score=39.63 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=27.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
-.++|+|||.||+..|..+.+ .|+ ++.+++++.-+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~-----~G~-------~V~vlEk~~~~ 56 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK-----NGL-------KVCVLERSLAF 56 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCCCC
Confidence 789999999999999877644 354 68889987544
No 321
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=50.47 E-value=15 Score=38.67 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
..|+|+|||-+|+.+|-.|.+. |. ++.++|+...
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-----g~-------~V~lie~~~~ 37 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-----GL-------RVLGLDRFMP 37 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecccC
Confidence 5699999999999999777663 43 6899998643
No 322
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=50.37 E-value=13 Score=39.30 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=24.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977654 354 57777765
No 323
>PRK06834 hypothetical protein; Provisional
Probab=50.32 E-value=15 Score=41.32 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=27.4
Q ss_pred CCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
++..|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45889999999999999988765 355 477777654
No 324
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=49.97 E-value=45 Score=33.53 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=40.4
Q ss_pred eEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
||+|.|| |-.|-.+++.+.+. | .+++.+++. ..++. +..++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d~~-----------------~~~~~~~~ 45 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLDLT-----------------DPEALERL 45 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccCCC-----------------CHHHHHHH
Confidence 6899997 88888887777652 4 257777763 11111 12458888
Q ss_pred hcccCCcEEEeecCC
Q 007456 404 VRKVKPHVLLGLSGV 418 (603)
Q Consensus 404 V~~vkptvLIG~S~~ 418 (603)
++.++||++|=+.+.
T Consensus 46 ~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 46 LRAIRPDAVVNTAAY 60 (287)
T ss_pred HHhCCCCEEEECCcc
Confidence 888899999987764
No 325
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=49.54 E-value=14 Score=41.19 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.3
Q ss_pred ceEEEeCcchhHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (603)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 569999999999999987755
No 326
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.46 E-value=14 Score=45.27 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=29.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC----CcccC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITK 372 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~----GLv~~ 372 (603)
.||+|+|||.||+..|..|... |. ++.++|+. |++.-
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 9999999999999999988763 54 58888875 66543
No 327
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=49.36 E-value=15 Score=39.26 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=24.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999977644 465 46777754
No 328
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=49.14 E-value=52 Score=38.79 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhCCCeEEEeecCCCc----hHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEE
Q 007456 252 VDEFMEAVHARWPKAIVQFEDFQMK----WAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIV 327 (603)
Q Consensus 252 vdefv~av~~~~P~~~Iq~EDf~~~----naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv 327 (603)
-++|++.++.++-+-.| ||.+.. =--.+++||..++--|+-... .++.|.. ..++ .||+
T Consensus 71 ~~~V~Eli~~L~~nGFV--rDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~---akVl 133 (637)
T TIGR03693 71 QKRVFEIGEILYKNGFV--RDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFE--LSRN---AKIL 133 (637)
T ss_pred HHHHHHHHHHHHhCCce--eecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhc---ccEE
Confidence 56777788878755433 344321 223478999988655443211 1122222 1256 9999
Q ss_pred EeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccc-cCCc--CC--cccCCCHHH
Q 007456 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDF--MG--LREGASLLE 402 (603)
Q Consensus 328 ~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~-~~~~--~~--~~~~~~L~e 402 (603)
++|.|..|.-+.-.|+. .|+ .+|..+|.+=..+. ...+.+. .+-|++ .++. .. .....++.|
T Consensus 134 VlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v~SN-lnRIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 134 AAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAEEHA-LDRIHEL-AEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred EEecCchHHHHHHHHHh-----cCC------CcEEEEeccccchh-hhHHHHH-HHHHHHhCCCCceEeccCCcchhHHH
Confidence 99999877666555544 576 47888876644222 1112222 333443 1111 00 112356788
Q ss_pred HhcccCCcEEEeecCCCC
Q 007456 403 VVRKVKPHVLLGLSGVGG 420 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g 420 (603)
+++. -|++|=+|..+-
T Consensus 201 v~~~--~DiVi~vsDdy~ 216 (637)
T TIGR03693 201 AFEP--ADWVLYVSDNGD 216 (637)
T ss_pred hhcC--CcEEEEECCCCC
Confidence 8877 488887776543
No 329
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=49.01 E-value=13 Score=39.54 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=26.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 579999999999999977644 465 578888763
No 330
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=48.66 E-value=16 Score=38.42 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=26.3
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
.|+|+|||.+|+.+|-.|.+ .|. ++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g~-------~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HGK-------KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999988764 353 5888998654
No 331
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=48.55 E-value=65 Score=35.75 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=44.5
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhcccccc---CC-
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDP---GD- 390 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~---~~- 390 (603)
..|.. .|++|+|-..-.+++++.|.+ .|+.. +.+ ++... +...+.-+.+.+.. .+
T Consensus 299 ~~l~g---krv~i~g~~~~~~~la~~L~e-----lGm~v------~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (435)
T cd01974 299 QYLHG---KKFALYGDPDFLIGLTSFLLE-----LGMEP------VHV------LTGNGGKRFEKEMQALLDASPYGAGA 358 (435)
T ss_pred HhcCC---CEEEEEcChHHHHHHHHHHHH-----CCCEE------EEE------EeCCCCHHHHHHHHHHHhhcCCCCCc
Confidence 44555 999999988888888888875 36632 111 11111 11111111111110 00
Q ss_pred -cCCcccCCCHHHHhcccCCcEEEeecC
Q 007456 391 -FMGLREGASLLEVVRKVKPHVLLGLSG 417 (603)
Q Consensus 391 -~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (603)
.-...+...+++.++..+||++||-|.
T Consensus 359 ~v~~~~d~~e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 359 KVYPGKDLWHLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred EEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 000113345788889999999999874
No 332
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.52 E-value=19 Score=39.85 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.4
Q ss_pred CceEEEeCcchhHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~ 344 (603)
.++++|+|+|.+|+.+|+.|.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 3899999999999999888765
No 333
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=48.45 E-value=15 Score=45.38 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=26.9
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 3799999999999999988865 353 58888875
No 334
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=48.18 E-value=18 Score=41.40 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=22.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.||+|+|||.+|+..|+.|.+ +|+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e-----~g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE-----EGL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH-----TT--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHH-----CCC-------CCeEEecC
Confidence 699999999999999998866 466 35566654
No 335
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=48.14 E-value=14 Score=38.92 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEEeCcchhHHHHHHHHHHH
Q 007456 326 IVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~ 345 (603)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 89999999999999988764
No 336
>PRK07588 hypothetical protein; Provisional
Probab=47.99 E-value=16 Score=39.04 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.1
Q ss_pred ceEEEeCcchhHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (603)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999987765
No 337
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=47.89 E-value=27 Score=37.82 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=26.4
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCccc
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~ 371 (603)
|+|+|||.||+.+|..|.+. ..|+ +|.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCCCC
Confidence 79999999999999777653 1254 577888765433
No 338
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=47.87 E-value=18 Score=37.60 Aligned_cols=32 Identities=47% Similarity=0.776 Sum_probs=26.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|.|+|+|..|.+||..++.+ |. +++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G~-------~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----GM-------DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998764 42 68888864
No 339
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=47.83 E-value=15 Score=41.33 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=27.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
-.|||+|+|.+|++||..+.. .|+ ++.++|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCCC
Confidence 459999999999999987765 365 5888988643
No 340
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=47.76 E-value=1e+02 Score=34.82 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCC
Q 007456 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNN 353 (603)
Q Consensus 308 l~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls 353 (603)
..++.-....|.. .|++|+|.+.-..++++.+.+ .|+.
T Consensus 312 ~~~l~~~~~~l~G---k~vaI~~~~~~~~~la~~l~E-----lGm~ 349 (475)
T PRK14478 312 WAALEPYRPRLEG---KRVLLYTGGVKSWSVVKALQE-----LGME 349 (475)
T ss_pred HHHHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHH-----CCCE
Confidence 3444444445556 899999888888888887644 5764
No 341
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=47.76 E-value=18 Score=42.76 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.5
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 48999999999999999988653 53 68889874
No 342
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=47.67 E-value=17 Score=39.97 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=25.0
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+++|+|||.||+.+|..+.+ .|. ++.++|++
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G~-------~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LNK-------RVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 58999999999999987764 243 68888875
No 343
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.65 E-value=17 Score=40.63 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.4
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHH
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~ 345 (603)
|...||+|+|+|-+|+++|+.+...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHC
Confidence 4458999999999999999998754
No 344
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=47.53 E-value=16 Score=40.25 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=26.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999998887653 4 3699999864
No 345
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.53 E-value=28 Score=39.38 Aligned_cols=153 Identities=24% Similarity=0.301 Sum_probs=85.1
Q ss_pred eeccCccccCccccccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCccccccCCCCCCccc
Q 007456 116 VLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIG 195 (603)
Q Consensus 116 ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 195 (603)
+..+|...+=.++..|..-+-..+==..|-+....| ++.| +-|... . |= .|+-|-
T Consensus 192 v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Y---krvG------kawKRG---Y---------LL---YGPPGT- 246 (457)
T KOG0743|consen 192 VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFY---KRVG------KAWKRG---Y---------LL---YGPPGT- 246 (457)
T ss_pred cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHH---HhcC------cchhcc---c---------ee---eCCCCC-
Confidence 556777666677777776654444333333443333 3333 234211 1 21 455553
Q ss_pred ccchhHHHHHHhcCCCCCceeeEEe-eccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEEEeecCC
Q 007456 196 IPIGKLDVYVAAAGINPQRILPVML-DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQ 274 (603)
Q Consensus 196 I~iGKl~LY~a~gGI~P~~~lPV~L-DvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~Iq~EDf~ 274 (603)
||+++-.|.|+-==-...=+.| .|+.| +|.=.-....-++..|-.|||
T Consensus 247 ---GKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~dLr~LL~~t~~kSIivIEDI- 295 (457)
T KOG0743|consen 247 ---GKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SDLRHLLLATPNKSILLIEDI- 295 (457)
T ss_pred ---CHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HHHHHHHHhCCCCcEEEEeec-
Confidence 7999999999864222444444 45432 342223333345679999999
Q ss_pred CchHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc
Q 007456 275 MKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA 331 (603)
Q Consensus 275 ~~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GA 331 (603)
..++.+=++-.++-.-|++ .-+-|||.||||++-=.--.=.+ .||+||=.
T Consensus 296 -Dcs~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~---ERIivFTT 345 (457)
T KOG0743|consen 296 -DCSFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGD---ERIIVFTT 345 (457)
T ss_pred -ccccccccccccccccccC---CcceeehHHhhhhhccccccCCC---ceEEEEec
Confidence 4556654554444444443 46779999999987533333334 67777643
No 346
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=47.46 E-value=26 Score=42.42 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=33.1
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
.+||||+|+|.||+..|+.|.+... .. .-+|.+++..--+.-+|..|+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~-~~-------~~~Itvi~~e~~~~Y~r~~L~ 50 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKAD-AA-------NFDITVFCEEPRIAYDRVHLS 50 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCC-CC-------CCeEEEEECCCCCcccCCcch
Confidence 3799999999999999998875321 01 136999988755544444444
No 347
>PRK07877 hypothetical protein; Provisional
Probab=47.45 E-value=28 Score=41.62 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=59.7
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCCh----------hhhccc
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP----------AAAPFA 385 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~----------~k~~fa 385 (603)
.+|+. .||+|+|+| .|..+|..|+.+ |+ ..+|.++|.+=+=. .+|+. .|..-|
T Consensus 103 ~~L~~---~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~---sNLnRq~~~~~diG~~Kv~~a 165 (722)
T PRK07877 103 ERLGR---LRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLEL---SNLNRVPAGVFDLGVNKAVVA 165 (722)
T ss_pred HHHhc---CCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEcc---cccccccCChhhcccHHHHHH
Confidence 44556 999999998 888888888765 42 14799999883322 23333 221111
Q ss_pred cc-----cCCcC--Ccc---cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007456 386 KD-----PGDFM--GLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (603)
Q Consensus 386 ~~-----~~~~~--~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LS 444 (603)
+. .+... ... ...++.+.+++ .|++|-++- ..=++-+|...|. ....|+|++.+
T Consensus 166 ~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~-~~~iP~i~~~~ 229 (722)
T PRK07877 166 ARRIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAAR-ARRIPVLMATS 229 (722)
T ss_pred HHHHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHH-HcCCCEEEEcC
Confidence 10 00000 000 11246666655 577777664 3334455555543 55678887764
No 348
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=47.24 E-value=13 Score=39.82 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=25.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 469999999999999987754 465 57777765
No 349
>PRK08013 oxidoreductase; Provisional
Probab=47.21 E-value=17 Score=39.24 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=24.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 579999999999999876644 465 46677764
No 350
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=47.18 E-value=15 Score=41.08 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.|++ .+|+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 17 ~L~~---s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 17 ALES---AHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHhh---CeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 3455 9999999999999998888776 44 689999987
No 351
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=47.17 E-value=1.1e+02 Score=33.09 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=65.1
Q ss_pred CCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCC
Q 007456 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
++...++-|+|.|..|..+|+.+... |+ +|...|++.. ++..+.+- ....+
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~F-----gm-------~v~y~~~~~~--------~~~~~~~~---------~~y~~ 193 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGF-----GM-------KVLYYDRSPN--------PEAEKELG---------ARYVD 193 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCCC--------hHHHhhcC---------ceecc
Confidence 45559999999999999999998733 33 5666666532 11111110 02234
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007456 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~ 459 (603)
|.|.++. .|+|+-..- .-+.|+++.++.|. +.-+|.=.|.=.--=|---.+|++
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk----~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK----PGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHH
Confidence 8999988 798885431 12789999999993 456666555533322333334444
No 352
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=46.78 E-value=18 Score=39.56 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
-.|||+|||+||+..|..+.+. | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999877653 4 3699999864
No 353
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=46.63 E-value=3e+02 Score=28.73 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=25.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
.||.|+|+|..|-.+|.-|++ .|.. ...+|+.+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 589999999999999888764 3431 1246888876
No 354
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=46.50 E-value=16 Score=38.29 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=23.9
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
|+|+|||.||+..|-.|.. .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999977665 354 466777763
No 355
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=46.32 E-value=18 Score=41.98 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=27.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..|+|+|||.+|+.+|-.|.+ .|. +|.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999998865 354 699999874
No 356
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=46.23 E-value=16 Score=41.58 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=25.2
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.|+|+|||.||+..|..+... |. ++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g~-------~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----KL-------DTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEecCC
Confidence 599999999999999777552 43 688888753
No 357
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=46.17 E-value=42 Score=34.78 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=22.0
Q ss_pred ccccccch---hhHHHHHHhCCcccCHHHHHHHHH
Q 007456 489 ANNMYLFP---GIGLGTLLSGARFITDGMLQQAAE 520 (603)
Q Consensus 489 ~NN~~iFP---GiglG~~~~~a~~Itd~m~~aAA~ 520 (603)
+||.++.- ++.=+..+++..-|+.+.+..+..
T Consensus 168 ~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 168 CNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 67776654 455566677777788887776655
No 358
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=46.09 E-value=16 Score=36.39 Aligned_cols=110 Identities=20% Similarity=0.348 Sum_probs=65.6
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccc-cCCcCCcccCCCHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASLLE 402 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~-~~~~~~~~~~~~L~e 402 (603)
||+|+||||+-. ..++...+.+.+.++ .+.|+|+|.+- .| +.+...-+.+++. ..++. .....++.|
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~-v~~ttd~~e 69 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDIDE----ERLEIVERLARRMVEEAGADLK-VEATTDRRE 69 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSE-EEEESSHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeE-EEEeCCHHH
Confidence 799999999854 445555555344454 36899999862 22 1111222233322 12221 123578999
Q ss_pred HhcccCCcEEE---------------------eecC-------CCCCCC--------HHHHHHhhhcCCCCCeEEecCCC
Q 007456 403 VVRKVKPHVLL---------------------GLSG-------VGGVFN--------EEVLKAMRESDSVKPAIFAMSNP 446 (603)
Q Consensus 403 ~V~~vkptvLI---------------------G~S~-------~~g~Ft--------~evv~~M~~~~~erPIIF~LSNP 446 (603)
|++. .|.+| |+-+ .+|.|. .|+.+.|. ++|+.--||=.+||
T Consensus 70 Al~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~-~~~PdAw~iNytNP 146 (183)
T PF02056_consen 70 ALEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIE-ELCPDAWLINYTNP 146 (183)
T ss_dssp HHTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHH-HHTTTSEEEE-SSS
T ss_pred HhCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHH-HhCCCcEEEeccCh
Confidence 9998 68887 3222 123322 57888884 58999999999999
Q ss_pred CC
Q 007456 447 TM 448 (603)
Q Consensus 447 t~ 448 (603)
..
T Consensus 147 ~~ 148 (183)
T PF02056_consen 147 MG 148 (183)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 359
>PRK09897 hypothetical protein; Provisional
Probab=46.07 E-value=26 Score=40.29 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=27.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.+|+|+|+|.+|+.+|..|+.. +- .-+|.++|+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~-----~~-----~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ-----QT-----PLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc-----CC-----CCcEEEEecCC
Confidence 4799999999999999999762 11 13699999853
No 360
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=46.02 E-value=17 Score=40.00 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.|+|+|||.||...|-.+.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 469999999999999988754 465 46667654
No 361
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=45.97 E-value=19 Score=40.38 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=26.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+++|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 799999999999999988764 343 58888865
No 362
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=45.96 E-value=21 Score=37.01 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=25.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCccc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~ 371 (603)
--++|+|||+||+..|..|.+. |+ ++.+++++=-+.
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~G 53 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSPG 53 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-B
T ss_pred CCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCCC
Confidence 5699999999999999877664 55 688899874443
No 363
>PRK08219 short chain dehydrogenase; Provisional
Probab=45.93 E-value=55 Score=31.36 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.7
Q ss_pred CCHHHHhccc-CCcEEEeecCCC
Q 007456 398 ASLLEVVRKV-KPHVLLGLSGVG 419 (603)
Q Consensus 398 ~~L~e~V~~v-kptvLIG~S~~~ 419 (603)
.++.++++.+ ++|++|-+.+..
T Consensus 60 ~~~~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 60 EAIAAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 4577777654 689999887654
No 364
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=45.90 E-value=17 Score=43.15 Aligned_cols=108 Identities=18% Similarity=0.095 Sum_probs=61.1
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---c-----cCCCHHHHhcccCCcEEEEcCCCC
Q 007456 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---N-----AECTAADAFKHAGENIVFASGSPF 473 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~---~-----aE~tpeda~~wt~Grai~AtGSPf 473 (603)
++=+.++|+++|..+| .+.=-.++.+.+ . +-+|=|.+=+.||.+ . .+-|.++.+++.-. |+..-=.
T Consensus 413 ~l~~~~~~~~ilasNT-Ssl~i~~la~~~-~-~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk 486 (715)
T PRK11730 413 EVEQKVREDTILASNT-STISISLLAKAL-K-RPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGK 486 (715)
T ss_pred HHHhhCCCCcEEEEcC-CCCCHHHHHhhc-C-CCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCC
Confidence 3445578999997765 333334444444 2 556668888999974 2 23344444433210 1122123
Q ss_pred CceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 007456 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (603)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 520 (603)
.||..+ ..||-.=|-..+|-+--++.+...- .|.+.+-.|.+
T Consensus 487 ~pv~v~----d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~ 528 (715)
T PRK11730 487 TPIVVN----DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVME 528 (715)
T ss_pred ceEEec----CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 455442 5688888888888766665555444 66666666543
No 365
>PRK08244 hypothetical protein; Provisional
Probab=45.89 E-value=17 Score=40.34 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
..|+|+|||.+|+..|-.|...
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~ 24 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA 24 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 5699999999999999887553
No 366
>PLN02463 lycopene beta cyclase
Probab=45.84 E-value=17 Score=40.73 Aligned_cols=32 Identities=38% Similarity=0.567 Sum_probs=25.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 469999999999999977754 365 57778875
No 367
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=45.75 E-value=19 Score=38.63 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=25.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~-----~G~-------~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL-----AGI-------DSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh-----cCC-------CEEEEEcCC
Confidence 689999999999999877755 465 356666553
No 368
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=45.71 E-value=1e+02 Score=33.62 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhh
Q 007456 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (603)
Q Consensus 303 ~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~ 382 (603)
+.|+.++|=.+..+.. .++.|+|+|.-+-. .+.++..--++ ++|++.|++ ++.-+
T Consensus 115 aAasavAa~~LA~~da-----~~laiIGaG~qA~~----ql~a~~~v~~~------~~I~i~~r~----------~~~~e 169 (330)
T COG2423 115 AAASAVAAKYLARKDA-----STLAIIGAGAQART----QLEALKAVRDI------REIRVYSRD----------PEAAE 169 (330)
T ss_pred HHHHHHHHHHhccCCC-----cEEEEECCcHHHHH----HHHHHHhhCCc------cEEEEEcCC----------HHHHH
Confidence 3455666666666644 45899999976544 44444422233 567777764 22222
Q ss_pred ccccccCC-c-CCcccCCCHHHHhcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007456 383 PFAKDPGD-F-MGLREGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (603)
Q Consensus 383 ~fa~~~~~-~-~~~~~~~~L~e~V~~vkptvLIG~S~~-~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~ 459 (603)
.|+..-.. . .......|++++|++ .|+++.++.. ...|+.++|+.= -=|.-.=||+-.+.|+.++-..+
T Consensus 170 ~~a~~l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~G------~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 170 AFAARLRKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKPG------THINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HHHHHHHhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCCC------cEEEecCCCCcccccCCHHHHHh
Confidence 33321100 0 001235789999999 7999988653 467888888731 12333345777888999987655
No 369
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=45.23 E-value=13 Score=37.82 Aligned_cols=92 Identities=27% Similarity=0.331 Sum_probs=54.3
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
++|++ -|++++|+|.-|..++..|+.+.+ ++++++|.+ +-+ ++.-|+.|-+...+. +.+
T Consensus 26 ~~l~~---s~vlvvG~GglG~~~~~~la~aGv-----------g~l~i~D~d---~v~---~snL~rq~~~~~~di-g~~ 84 (254)
T COG0476 26 QKLKD---SRVLVVGAGGLGSPAAKYLALAGV-----------GKLTIVDFD---TVE---LSNLQRQFLFTEADV-GKP 84 (254)
T ss_pred HHHhh---CCEEEEecChhHHHHHHHHHHcCC-----------CeEEEEcCC---ccc---ccccCceeeeccccc-CCc
Confidence 45566 999999999999999998888644 469999987 222 233333333332221 111
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHh
Q 007456 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 430 (603)
...+..+.++...|.+-+=... ..++++.+...
T Consensus 85 Ka~~a~~~l~~ln~~v~v~~~~--~~l~~~~~~~~ 117 (254)
T COG0476 85 KAEVAAKALRKLNPLVEVVAYL--ERLDEENAEEL 117 (254)
T ss_pred HHHHHHHHHHHhCCCCeEEEee--cccChhhHHHH
Confidence 1223445677777777553332 22555655443
No 370
>PRK06185 hypothetical protein; Provisional
Probab=45.18 E-value=18 Score=38.74 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=25.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 679999999999999877644 465 477788763
No 371
>PLN02676 polyamine oxidase
Probab=45.02 E-value=40 Score=37.98 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.+++|+|||.+|+..|..|...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHc
Confidence 6899999999999999888763
No 372
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=44.98 E-value=19 Score=39.45 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=24.9
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
.+||+|||.||+..|..+... |. ++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G~-------~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----GL-------KVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEec
Confidence 489999999999999887653 43 6889998
No 373
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=44.92 E-value=12 Score=33.23 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=26.2
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
|++.++||+|+|..|.-=+++|+++ | .++.++...-
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 4459999999999998877777664 2 3688887763
No 374
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=44.41 E-value=20 Score=40.92 Aligned_cols=32 Identities=19% Similarity=0.609 Sum_probs=26.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.|+|+|+|..|+++|..|... |+ ++.++|+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 4699999999999999988763 55 58889975
No 375
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=44.40 E-value=19 Score=39.66 Aligned_cols=33 Identities=42% Similarity=0.778 Sum_probs=22.9
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
|||+|+|.||+.-|-.... .|+ ++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999888765544 465 69999998866
No 376
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=44.38 E-value=19 Score=37.93 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=25.6
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.|+|+|||-+|+.+|-.|.+. |. ++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G~-------~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----GL-------SVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCCC
Confidence 489999999999999888653 43 588888763
No 377
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=44.37 E-value=22 Score=32.68 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=25.1
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999998888664 3 3688888876
No 378
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=44.37 E-value=37 Score=38.34 Aligned_cols=105 Identities=25% Similarity=0.412 Sum_probs=68.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC----CcccCCCCCCChhhhccccccCCcCCcccCCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~----GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
.+|+|+|||-||++-|-.|.+.. . + -.+.+++++ |++.+-. ...|
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~----p-~-----~~i~lfE~~~r~GG~l~T~~------~~G~--------------- 49 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAG----P-D-----VEVTLFEADDRVGGLLRTVK------IDGF--------------- 49 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC----C-C-----CcEEEEecCCCCCceEEEEe------eCCE---------------
Confidence 37999999999999999888763 1 1 257788775 3333210 0000
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc-CCcE-EEEcCCCCCcee
Q 007456 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA-GENI-VFASGSPFENVD 477 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt-~Gra-i~AtGSPf~pv~ 477 (603)
+. ...|+.++.. .+++++.+. |+..||-+.|. .++. |+.
T Consensus 50 ~~----e~G~~~f~~~-------~~~~l~li~-------------------eLGled~l~~~~~~~~~i~~--------- 90 (444)
T COG1232 50 LF----ERGPHHFLAR-------KEEILDLIK-------------------ELGLEDKLLWNSTARKYIYY--------- 90 (444)
T ss_pred EE----eechhheecc-------hHHHHHHHH-------------------HhCcHHhhccCCcccceEee---------
Confidence 00 1235556543 279999984 78999988876 4444 444
Q ss_pred cCCCeeeccccccccccchhhHHH
Q 007456 478 LGNGKIGHVNQANNMYLFPGIGLG 501 (603)
Q Consensus 478 ~~~G~~~~p~Q~NN~~iFPGiglG 501 (603)
+||.+.....| .+-+|.+-..
T Consensus 91 --~gkl~p~P~~~-i~~ip~~~~~ 111 (444)
T COG1232 91 --DGKLHPIPTPT-ILGIPLLLLS 111 (444)
T ss_pred --CCcEEECCccc-eeecCCcccc
Confidence 47888777776 9999877654
No 379
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=44.33 E-value=19 Score=38.69 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=25.0
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 579999999999999977644 465 47777764
No 380
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=44.23 E-value=2e+02 Score=33.19 Aligned_cols=191 Identities=17% Similarity=0.176 Sum_probs=110.1
Q ss_pred hhhhHhHHHHHHHHHHhC-CCeEEEeecCC--CchHHHHHHHHhhcC----------Ccc----ccCCchhHHHHHHHHH
Q 007456 246 EEYLSIVDEFMEAVHARW-PKAIVQFEDFQ--MKWAFETLERYRKRF----------CMF----NDDIQGTAGVALAGLL 308 (603)
Q Consensus 246 ~~Y~~~vdefv~av~~~~-P~~~Iq~EDf~--~~naf~iL~ryr~~~----------~~F----nDDiQGTaaV~lAgll 308 (603)
.|-..+--.||..+.+.- |..-+==+|++ ...---+++.|+... +.- |+-.--|+-=+..++=
T Consensus 158 nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e 237 (514)
T KOG2250|consen 158 NEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVE 237 (514)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHH
Confidence 344445556666655533 76666667776 222334788888642 222 2222224333333222
Q ss_pred HHHHHhC--CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhh-ccc
Q 007456 309 GTVRAQG--LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA-PFA 385 (603)
Q Consensus 309 ~A~r~tg--~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~-~fa 385 (603)
+=++-.+ +.++. .|+++=|-|--|.-.|..|.+... +-|-+-|++|.|.... .++..+. .++
T Consensus 238 ~~~~~~~~~~~~kg---kr~~i~G~Gnv~~~aa~~l~~~G~-----------kvvavsD~~G~l~np~-Gid~~eL~~~~ 302 (514)
T KOG2250|consen 238 AILNDANGKKGIKG---KRVVIQGFGNVGGHAAKKLSEKGA-----------KVVAVSDSKGVLINPD-GIDIEELLDLA 302 (514)
T ss_pred HHHHhccCCCCcCc---eEEEEeCCCchHHHHHHHHHhcCC-----------EEEEEEcCceeEECCC-CCCHHHHHHHH
Confidence 2222223 56677 999999999999888888877532 4678889999988754 3433322 112
Q ss_pred cccC---CcCCc-ccCC------CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007456 386 KDPG---DFMGL-REGA------SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (603)
Q Consensus 386 ~~~~---~~~~~-~~~~------~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN-Pt~~aE~tp 454 (603)
.... .+++. .... -+.--|. |.|+++=|.++ +..|.+=.+..-+++| |+|.==|| ||. -.+
T Consensus 303 ~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT---peA 374 (514)
T KOG2250|consen 303 DEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT---PEA 374 (514)
T ss_pred HhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC---hhH
Confidence 1100 01000 0000 0112233 47999999997 9999888888866566 89998899 665 345
Q ss_pred HHHhc
Q 007456 455 ADAFK 459 (603)
Q Consensus 455 eda~~ 459 (603)
.++++
T Consensus 375 ~~vle 379 (514)
T KOG2250|consen 375 DEVLE 379 (514)
T ss_pred HHHHH
Confidence 56665
No 381
>PRK07538 hypothetical protein; Provisional
Probab=44.18 E-value=19 Score=38.88 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.9
Q ss_pred eEEEeCcchhHHHHHHHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~ 344 (603)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999877654
No 382
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=44.03 E-value=22 Score=39.68 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=26.0
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 3899999999999998887754 354 47778765
No 383
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=43.99 E-value=21 Score=38.26 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=25.4
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|+|+|||-+|+.+|..+... |. +|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g~-------~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----GH-------EVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 699999999999999887653 43 68889886
No 384
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=43.69 E-value=23 Score=41.20 Aligned_cols=34 Identities=35% Similarity=0.655 Sum_probs=27.4
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..||+|+|+|.||+..|..+... |. ++.++|+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 49999999999999999888763 53 477888764
No 385
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=43.56 E-value=67 Score=34.19 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhhhcCC-CCCeEEecC-CCCC
Q 007456 408 KPHVLLGLSGVGGVFNEEVLKAMRESDS-VKPAIFAMS-NPTM 448 (603)
Q Consensus 408 kptvLIG~S~~~g~Ft~evv~~M~~~~~-erPIIF~LS-NPt~ 448 (603)
+-|++||+|..+. |+++++.+..... .-|+ ++++ ||.+
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~-IaIT~~~~s 166 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATT-IALSCNPDS 166 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeE-EEEECCCCC
Confidence 4699999997543 5778877733222 2344 4554 5554
No 386
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=43.40 E-value=22 Score=38.74 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=30.7
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
|++|=||++|||..|--++.+|+...+ ++|-++|-+-.
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~-----------qKi~iVDfdqV 109 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGV-----------QKIRIVDFDQV 109 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcC-----------ceEEEechhhc
Confidence 444999999999999999999987655 57888886643
No 387
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=43.39 E-value=19 Score=38.16 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 579999999999999976644 465 578888763
No 388
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.36 E-value=19 Score=40.44 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=27.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
-.|||+|+|.+|+++|..+... |+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECCC
Confidence 4699999999999999998663 65 588899763
No 389
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=43.35 E-value=19 Score=37.96 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=32.6
Q ss_pred CCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC
Q 007456 318 LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (603)
Q Consensus 318 l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~ 372 (603)
|+-|++++|+++|.|-.|--+++.|.. .|+ .+|.++|-+-+=.+
T Consensus 25 lekl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 25 LEKLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHHHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 333555999999999888777666655 465 68999999866544
No 390
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=43.33 E-value=20 Score=39.16 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999888663 4 369999975
No 391
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=43.30 E-value=18 Score=38.51 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.2
Q ss_pred eEEEeCcchhHHHHHHHHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~ 345 (603)
.|+|+|||.||+..|-.|..+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999887653
No 392
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=43.17 E-value=23 Score=39.88 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=28.8
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
||+++|||..|+-+++.|+.+++ -.|- ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv-~~g~-----~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGV-GTGE-----SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CcCC-----CCeEEEECCC
Confidence 68999999999999999987644 1111 1689999987
No 393
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=43.16 E-value=21 Score=39.37 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=25.1
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
+||+|||+||+..|..+.+. |+ ++.++|++.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g~-------~v~lie~~~ 33 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----GA-------SVAMVERGP 33 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCCc
Confidence 89999999999998877653 43 689999763
No 394
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=43.01 E-value=21 Score=39.38 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=25.8
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
|++|+|+|+||+..|..+.+. |+ ++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g~-------~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----GK-------NVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 799999999999998887653 43 69999975
No 395
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=42.94 E-value=17 Score=41.34 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=31.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeE-----EEEecCCcccC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF-----FLLDKDGLITK 372 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i-----~lvD~~GLv~~ 372 (603)
+||+|+|||-||++.|..|.++.. -++.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCceeeeeecCCCCeee
Confidence 589999999999999999988632 12333555442 12566666654
No 396
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=42.89 E-value=71 Score=33.36 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCe-EEEeecCCC-----chHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEE
Q 007456 254 EFMEAVHARWPKA-IVQFEDFQM-----KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIV 327 (603)
Q Consensus 254 efv~av~~~~P~~-~Iq~EDf~~-----~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv 327 (603)
+.+++..+.++.. +|| |++. ++.++++.+|.-.+++.+.|.+|+..-. + .|
T Consensus 80 ~v~eaaL~~~~G~~iIN--sIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~----------------~---~~-- 136 (261)
T PRK07535 80 AAIEAGLKVAKGPPLIN--SVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDA----------------E---DR-- 136 (261)
T ss_pred HHHHHHHHhCCCCCEEE--eCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCH----------------H---HH--
Confidence 6666666666544 665 6655 3457788888877777777767754211 1 11
Q ss_pred EeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 328 ~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
+.+++.+++.+. +.|+++ ++|+ +|.
T Consensus 137 --------~~~l~~~v~~a~-~~GI~~----~~Ii-lDP 161 (261)
T PRK07535 137 --------LAVAKELVEKAD-EYGIPP----EDIY-IDP 161 (261)
T ss_pred --------HHHHHHHHHHHH-HcCCCH----hHEE-EeC
Confidence 455566666666 688875 5676 776
No 397
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=42.83 E-value=21 Score=38.51 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.9
Q ss_pred eEEEeCcchhHHHHHHHHHHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~ 345 (603)
||+|+|||.||+..|..|..+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999988764
No 398
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=42.52 E-value=34 Score=36.72 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=32.8
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEec
Q 007456 295 DIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (603)
Q Consensus 295 DiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~ 366 (603)
+..+.-+=-+|.-+.+.......... .+++|+|||+.|+..+.+.. ..|. ++|+++|.
T Consensus 144 ~~~aal~epla~~~~~~a~~~~~~~~---~~V~V~GaGpIGLla~~~a~-----~~Ga------~~Viv~d~ 201 (350)
T COG1063 144 EEAAALTEPLATAYHGHAERAAVRPG---GTVVVVGAGPIGLLAIALAK-----LLGA------SVVIVVDR 201 (350)
T ss_pred hhhhhhcChhhhhhhhhhhccCCCCC---CEEEEECCCHHHHHHHHHHH-----HcCC------ceEEEeCC
Confidence 33443333344443342333333344 59999999999977632222 3455 47998876
No 399
>PTZ00188 adrenodoxin reductase; Provisional
Probab=42.37 E-value=30 Score=39.77 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=26.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.||+|+|||.||+-.|..++.. .|. ++.++|+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~ 72 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKL 72 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecC
Confidence 7999999999999999977652 243 57888876
No 400
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=42.15 E-value=17 Score=39.92 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=30.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHh-cC--CChhhhcC----eEEEEecCCcc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AG--NNDAFARN----KFFLLDKDGLI 370 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~-~G--ls~~eA~~----~i~lvD~~GLv 370 (603)
++|+|+|||-||+..|..|.++.... .| ++.=||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999997753100 02 44456655 35554444543
No 401
>PRK05868 hypothetical protein; Validated
Probab=42.11 E-value=22 Score=38.22 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.6
Q ss_pred ceEEEeCcchhHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (603)
.+|+|+|||.+|+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999877654
No 402
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=41.93 E-value=20 Score=38.09 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=25.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 579999999999999877644 454 58888875
No 403
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=41.83 E-value=22 Score=39.32 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=26.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.+||+|+|+||+..|..+.+. | .++.++|+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 4699999999999998887653 4 379999975
No 404
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=41.76 E-value=23 Score=40.30 Aligned_cols=103 Identities=14% Similarity=0.012 Sum_probs=54.9
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccCC-----CHHHHhcccCCcEEE-EcCCCCCcee
Q 007456 407 VKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAEC-----TAADAFKHAGENIVF-ASGSPFENVD 477 (603)
Q Consensus 407 vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~---~aE~-----tpeda~~wt~Grai~-AtGSPf~pv~ 477 (603)
.+|+++|...+. .++.+-+..-. .+-+|=+-+-+-||.+ +.|+ |.++++++.. .++ .-| -.||.
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~-~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lg--k~pv~ 184 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAAL-KHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWG--KTPVR 184 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhc-CCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcC--CceEE
Confidence 478888864331 13333232221 1344447777788765 2233 2344443221 010 011 11222
Q ss_pred cCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 007456 478 LGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (603)
Q Consensus 478 ~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 520 (603)
. | ..||-.+|-..+|.+.-+..+...--++.+-+..|.+
T Consensus 185 v--~--d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 185 A--K--DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred e--c--CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 1 3477889999999888888888766677666666643
No 405
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=41.72 E-value=66 Score=34.21 Aligned_cols=106 Identities=20% Similarity=0.128 Sum_probs=54.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.++.|+|+|.-+..-++.+... .++ ++|+++|+.- . ....+...+.+..-+ .....+++|+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~~----~--~~~~~~~~~~~~~~~---v~~~~~~~~a 189 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRSP----E--RAEAFAARLRDLGVP---VVAVDSAEEA 189 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SSH----H--HHHHHHHHHHCCCTC---EEEESSHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccCh----h--HHHHHHHhhcccccc---ceeccchhhh
Confidence 6899999999888877766654 233 6899888741 1 122222222220111 1235789999
Q ss_pred hcccCCcEEEeecCCC---CCCCHHHHHHhhhcCCCCCeEEecCCCC-CccCCCHHHH
Q 007456 404 VRKVKPHVLLGLSGVG---GVFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTAADA 457 (603)
Q Consensus 404 V~~vkptvLIG~S~~~---g~Ft~evv~~M~~~~~erPIIF~LSNPt-~~aE~tpeda 457 (603)
++. .||++.+++.. ..|+.++++. .-.|-++.--+ .+.|+.++-.
T Consensus 190 v~~--aDii~taT~s~~~~P~~~~~~l~~-------g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 190 VRG--ADIIVTATPSTTPAPVFDAEWLKP-------GTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp HTT--SSEEEE----SSEEESB-GGGS-T-------T-EEEE-S-SSTTBESB-HHHH
T ss_pred ccc--CCEEEEccCCCCCCccccHHHcCC-------CcEEEEecCCCCchhhcCHHHh
Confidence 999 79999876543 3688877763 34677766432 2358877543
No 406
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=41.66 E-value=38 Score=30.17 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=50.4
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCC
Q 007456 330 GAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKP 409 (603)
Q Consensus 330 GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~vkp 409 (603)
|.|..|.+++++|...-. .-++ +=+.++|+++++... +....... ....++.+.++..++
T Consensus 1 G~G~VG~~l~~~l~~~~~-~~~~------~v~~v~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~ 60 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQE-RIDL------EVVGVADRSMLISKD-------WAASFPDE------AFTTDLEELIDDPDI 60 (117)
T ss_dssp --SHHHHHHHHHHHHTHH-HCEE------EEEEEEESSEEEETT-------HHHHHTHS------CEESSHHHHHTHTT-
T ss_pred CCCHHHHHHHHHHHhCcc-cCCE------EEEEEEECCchhhhh-------hhhhcccc------cccCCHHHHhcCcCC
Confidence 789999999999987532 1022 346778888444433 11111111 124679999997889
Q ss_pred cEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007456 410 HVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (603)
Q Consensus 410 tvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF 441 (603)
|++|=+++ +...++-+.+.+. +...||-
T Consensus 61 dvvVE~t~-~~~~~~~~~~~L~---~G~~VVt 88 (117)
T PF03447_consen 61 DVVVECTS-SEAVAEYYEKALE---RGKHVVT 88 (117)
T ss_dssp SEEEE-SS-CHHHHHHHHHHHH---TTCEEEE
T ss_pred CEEEECCC-chHHHHHHHHHHH---CCCeEEE
Confidence 99999954 4555555555552 2455553
No 407
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.57 E-value=24 Score=39.52 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=20.8
Q ss_pred CceEEEeCcchhHHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (603)
++||+|+|.|..|.++|++|...
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHc
Confidence 38999999999999999998764
No 408
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=41.44 E-value=22 Score=40.20 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=18.4
Q ss_pred ceEEEeCcchhHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (603)
.+|+|+|||.+|+..|-.|..
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHh
Confidence 579999999999999987754
No 409
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=41.40 E-value=27 Score=36.63 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=28.2
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
..+|+|+|+|-+|+.+|-.|.+. |. +|.++|++..-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 37899999999999998887664 43 68888876553
No 410
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=41.30 E-value=24 Score=38.02 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=25.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGI-------DNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC-------CEEEEECCC
Confidence 579999999999999976644 576 366777654
No 411
>PRK14852 hypothetical protein; Provisional
Probab=41.05 E-value=21 Score=43.95 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
++|+. .||+|+|+|..|.-||..|+.+ |+ ++|.++|-+=
T Consensus 328 ~kL~~---srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~ 366 (989)
T PRK14852 328 RRLLR---SRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDA 366 (989)
T ss_pred HHHhc---CcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCE
Confidence 35666 9999999998888888888776 44 6899999873
No 412
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=40.75 E-value=31 Score=35.84 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=30.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHH--hcCCChhhhcCeEEEEecCCc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~--~~Gls~~eA~~~i~lvD~~GL 369 (603)
.||+++|+|.-|.-+++.|+.+.+. .-|.+. . -+|.++|.+-+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~--g-~~i~lvD~D~V 56 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPG--G-LAVTVYDDDTV 56 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCC--C-CEEEEECCCEE
Confidence 8999999999999999999886320 112110 0 17999998733
No 413
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=40.71 E-value=1.5e+02 Score=30.62 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=53.0
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||.++|+ |..|-.+++.+... .++ +=..++|++.--. ... ..+ . .....++.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~~~~---~~~----~~~-----~---i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPGSPL---VGQ----GAL-----G---VAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCCccc---ccc----CCC-----C---ccccCCHHH
Confidence 48999999 99998888766441 232 2355677652100 001 011 0 012357888
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe
Q 007456 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (603)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~ 442 (603)
+++ ++|++|=+|. |... .++++...+ ...|+|..
T Consensus 57 ll~--~~DvVid~t~-p~~~-~~~~~~al~--~G~~vvig 90 (257)
T PRK00048 57 VLA--DADVLIDFTT-PEAT-LENLEFALE--HGKPLVIG 90 (257)
T ss_pred hcc--CCCEEEECCC-HHHH-HHHHHHHHH--cCCCEEEE
Confidence 886 5999998884 4444 666666543 56888865
No 414
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=40.44 E-value=30 Score=37.11 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=28.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
-.|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 5699999999999999888763 243 36999998753
No 415
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=40.37 E-value=24 Score=39.17 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=20.4
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|+|+|||+||+-.|-.+.. .|. ++.++++.
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g~-------~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KGA-------RVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEeCC
Confidence 58999999999988877743 353 68888876
No 416
>PRK08655 prephenate dehydrogenase; Provisional
Probab=40.31 E-value=84 Score=35.11 Aligned_cols=91 Identities=16% Similarity=0.287 Sum_probs=52.5
Q ss_pred eEEEeC-cchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 325 riv~~G-AGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
||.|+| .|..|..+|..+... |. +++++|++. +... ..+.... .....++.++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-----G~-------~V~v~~r~~------~~~~----~~a~~~g----v~~~~~~~e~ 55 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-----GF-------EVIVTGRDP------KKGK----EVAKELG----VEYANDNIDA 55 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-----CC-------EEEEEECCh------HHHH----HHHHHcC----CeeccCHHHH
Confidence 789998 699998888887553 42 588888641 1111 1121100 0012356777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007456 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (603)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSN 445 (603)
++. +|++| ++. |-..++++++.++....+.-+|+-+|+
T Consensus 56 ~~~--aDvVI-lav-p~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 56 AKD--ADIVI-ISV-PINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred hcc--CCEEE-Eec-CHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 766 57765 443 333457777777543345668887775
No 417
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=40.19 E-value=27 Score=37.55 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=26.0
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
-|+|+|||-||+..|..|..+ |. .+.++|+-+=
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCCC
Confidence 489999999999999888765 54 4778887543
No 418
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=40.17 E-value=26 Score=39.10 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=24.0
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|||+|+|+||.-.|-.|...+. . . -+|.++.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~-~-~-------~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP-D-A-------LSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT-C-S-------SEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCC-C-C-------cEEEEEecC
Confidence 69999999999999988887643 0 0 378888876
No 419
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=39.99 E-value=27 Score=38.33 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=25.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.+||+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4699999999999999877653 4 368889983
No 420
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=39.96 E-value=26 Score=34.94 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=39.1
Q ss_pred HHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCe-EEEeecCCCchH
Q 007456 203 VYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFEDFQMKWA 278 (603)
Q Consensus 203 LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~Iq~EDf~~~na 278 (603)
+-...+.+++ .+ ++||+|.| .+-++|.+-++.||+.+++..|++ +|-.|.+..++.
T Consensus 51 ~a~~ia~~~a-~~--~~ld~~~N-----------------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~ 107 (178)
T PF14606_consen 51 VADLIAEIDA-DL--IVLDCGPN-----------------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG 107 (178)
T ss_dssp HHHHHHHS---SE--EEEEESHH-----------------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT
T ss_pred HHHHHhcCCC-CE--EEEEeecC-----------------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc
Confidence 3445678875 44 48999987 356899999999999999999998 777788766654
No 421
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=39.95 E-value=21 Score=38.19 Aligned_cols=82 Identities=18% Similarity=0.347 Sum_probs=41.2
Q ss_pred EEEeC-cchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccc--cCCc--------CCc
Q 007456 326 IVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD--PGDF--------MGL 394 (603)
Q Consensus 326 iv~~G-AGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~--~~~~--------~~~ 394 (603)
|+|-| +||.|-.++++|++.-- ++|+++|++-- .|-..+++|.+. .+.+ ...
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----------~~lil~d~~E~------~l~~l~~~l~~~~~~~~v~~~~~~vigDv 63 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----------KKLILFDRDEN------KLYELERELRSRFPDPKVRFEIVPVIGDV 63 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------------SEEEEEES-HH------HHHHHHHHCHHHC--TTCEEEEE--CTSC
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----------CeEEEeCCChh------HHHHHHHHHhhcccccCcccccCceeecc
Confidence 45555 58899888888877522 68999998611 123333333210 0000 001
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHh
Q 007456 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (603)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~M 430 (603)
.+...|..+++..+||+++=+.+. ..|..|
T Consensus 64 rd~~~l~~~~~~~~pdiVfHaAA~------KhVpl~ 93 (293)
T PF02719_consen 64 RDKERLNRIFEEYKPDIVFHAAAL------KHVPLM 93 (293)
T ss_dssp CHHHHHHHHTT--T-SEEEE------------HHHH
T ss_pred cCHHHHHHHHhhcCCCEEEEChhc------CCCChH
Confidence 123458889998899999988774 455555
No 422
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.83 E-value=74 Score=39.04 Aligned_cols=191 Identities=12% Similarity=0.171 Sum_probs=95.6
Q ss_pred CChhhHHHHHhcCCCCCceEE-EEecCccccccCCCCCCcccccchhHH-HHHH-----hcCCCCCceeeEEeeccCCch
Q 007456 155 KDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLD-VYVA-----AAGINPQRILPVMLDVGTNNQ 227 (603)
Q Consensus 155 ~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~GmgI~iGKl~-LY~a-----~gGI~P~~~lPV~LDvGTnN~ 227 (603)
.|-..+..+|... +++++ ++|.++.+=-|-..+...+-|.++.-. .+.+ ==||. .+-
T Consensus 197 gd~~elk~lL~~~---Gi~v~~~~~g~~t~eei~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP---~~~---------- 260 (917)
T PRK14477 197 GDLWGMLPLFDRL---GIRVLSCISGDAKFEELRYAHRAKLNVIICSKSLTNLARKMEKRYGIP---YLE---------- 260 (917)
T ss_pred chHHHHHHHHHHc---CCeEEEEcCCCCCHHHHHhcccCCEEEEEcHHHHHHHHHHHHHHhCCC---EEe----------
Confidence 3444566666654 45554 556666666666666555555553222 2221 11444 110
Q ss_pred hcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCeEEEee-cCCCchHHHHHHHHhhcCCccccCCchhHHHHHHH
Q 007456 228 KLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFE-DFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAG 306 (603)
Q Consensus 228 ~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~Iq~E-Df~~~naf~iL~ryr~~~~~FnDDiQGTaaV~lAg 306 (603)
. .++|+ +-.|+|+..+.+.+-.-.-..+ +.-...+-+.+++.|.+
T Consensus 261 ----~-~p~Gi-----------~~T~~~L~~ia~~~g~~~~~~~~~~~~~~~e~~i~~e~~~------------------ 306 (917)
T PRK14477 261 ----E-SFYGM-----------TDTAKALRDIARELDDAGGGLEKRVLQDRVEKLIAEEEAK------------------ 306 (917)
T ss_pred ----c-CccCH-----------HHHHHHHHHHHHHhCCcccCCchhhhHHHHHHHHHHHHHH------------------
Confidence 0 11333 2367888888777732110000 00123455666666665
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhh--cc
Q 007456 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PF 384 (603)
Q Consensus 307 ll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~--~f 384 (603)
+.-++.-....|+. .|++|+|.|.-..++++.|.+ .|+. +..+-.+ . .+..+..+ .+
T Consensus 307 ~~~~l~~~~~~L~G---Krv~i~~g~~~~~~la~~l~e-----lGme-------vv~~g~~-----~-~~~~d~~~~~~~ 365 (917)
T PRK14477 307 CRAALAPYRARLEG---KRVVLFTGGVKTWSMVNALRE-----LGVE-------VLAAGTQ-----N-STLEDFARMKAL 365 (917)
T ss_pred HHHHHHHHHHHccC---CEEEEECCCchHHHHHHHHHH-----CCCE-------EEEEcCC-----C-CCHHHHHHHHHh
Confidence 23344444455666 999999988888888887754 4663 2221111 0 01111111 11
Q ss_pred ccccCCcCCcccCCCHHHHhcccCCcEEEeec
Q 007456 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (603)
Q Consensus 385 a~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (603)
..+...+-...+...|++.++..|||.+||-|
T Consensus 366 ~~~~~~vi~~~d~~el~~~i~~~~pDLlig~~ 397 (917)
T PRK14477 366 MHKDAHIIEDTSTAGLLRVMREKMPDLIVAGG 397 (917)
T ss_pred cCCCCEEEECCCHHHHHHHHHhcCCCEEEecC
Confidence 11111110011234588899999999999965
No 423
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=39.73 E-value=70 Score=33.94 Aligned_cols=124 Identities=17% Similarity=0.251 Sum_probs=73.5
Q ss_pred EeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHHHhcc
Q 007456 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRK 406 (603)
Q Consensus 328 ~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V~~ 406 (603)
|+|||..|..+|-+|+. .|+- ..|.|+|.+-=..++- -+|.+....+.++. .. ..+-.+.+++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l~-----~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~-~i-----~~~~~~~~~d 64 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGIA-----DEIVLIDINKDKAEGEAMDLQHAASFLPTPK-KI-----RSGDYSDCKD 64 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCChhhHHHHHHHHhhcccCCCe-EE-----ecCCHHHHCC
Confidence 58999999999988754 3553 4799999842212211 23444332222211 11 1123466777
Q ss_pred cCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCC--cEEEEcC
Q 007456 407 VKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--NIVFASG 470 (603)
Q Consensus 407 vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~G--rai~AtG 470 (603)
.|++|=+.+. +|- .=+++++.+.+ ++..-+|+-.|||.. +...-++++++= +-+|.+|
T Consensus 65 --aDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~g 138 (299)
T TIGR01771 65 --ADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVK-SGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSG 138 (299)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEecc
Confidence 6988855544 331 12456777754 889999999999986 566666665521 2466776
Q ss_pred CCC
Q 007456 471 SPF 473 (603)
Q Consensus 471 SPf 473 (603)
.-.
T Consensus 139 t~L 141 (299)
T TIGR01771 139 TVL 141 (299)
T ss_pred chH
Confidence 443
No 424
>PRK10015 oxidoreductase; Provisional
Probab=39.68 E-value=24 Score=38.96 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
-.++|+|||.||...|-.+.+ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 469999999999999987754 465 477787653
No 425
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.65 E-value=26 Score=38.23 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCceEEEeCcchhHHHHHHHHHHH
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~ 345 (603)
...+++|+|+|..|.++|+.+.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~ 27 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKL 27 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC
Confidence 348999999999999998887764
No 426
>PRK06392 homoserine dehydrogenase; Provisional
Probab=39.59 E-value=1.4e+02 Score=32.33 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=86.7
Q ss_pred eEEEeCcchhHHHHHHHHHHHHH-HhcCCChhhhcCeEEEEecCCcccCCCC-CCChhhhccccccCCcCCcc-cCCCHH
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAA-RMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLR-EGASLL 401 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~-~~~Gls~~eA~~~i~lvD~~GLv~~~r~-~l~~~k~~fa~~~~~~~~~~-~~~~L~ 401 (603)
||.++|.|..|-+++++|.+.-. ++.|+.. +=+.+.|++|.+.+... ++.... .+.+.. .+.... ...++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l----~VVaVsds~g~l~~~~Gldl~~l~-~~~~~g-~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGI----SVVSVSDSKLSYYNERGLDIGKII-SYKEKG-RLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCe----EEEEEEECCCcccCCcCCChHHHH-HHHhcC-ccccCCCCcCCHH
Confidence 79999999999999999876311 1223321 22556799998887652 222211 111110 000000 112577
Q ss_pred HHhcccCCcEEEeecCC--CCC-CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHH--HHhcccCCcEEE-----EcCC
Q 007456 402 EVVRKVKPHVLLGLSGV--GGV-FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA--DAFKHAGENIVF-----ASGS 471 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~--~g~-Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpe--da~~wt~Grai~-----AtGS 471 (603)
+.++ .+|||+|=+++. .|. -..-+.+.+. +...+|. +|=-+.|+-..+ ++-+ ..|+.++ +.|-
T Consensus 76 ~ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~---~G~hVVT--aNKgalA~~~~eL~~lA~-~~g~~~~~eatV~~g~ 148 (326)
T PRK06392 76 EIFE-IKPDVIVDVTPASKDGIREKNLYINAFE---HGIDVVT--ANKSGLANHWHDIMDSAS-KNRRIIRYEATVAGGV 148 (326)
T ss_pred HHhc-CCCCEEEECCCCCCcCchHHHHHHHHHH---CCCEEEc--CCHHHHHhhHHHHHHHHH-HcCCeEEEeeeeeecc
Confidence 7765 589999988742 121 1122233442 2344443 443333322221 1222 2455444 4565
Q ss_pred CCCceecCCCeeeccccccccccchhhHHHH---HHhCCc-ccCHHHHHHHHHH
Q 007456 472 PFENVDLGNGKIGHVNQANNMYLFPGIGLGT---LLSGAR-FITDGMLQQAAEC 521 (603)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~---~~~~a~-~Itd~m~~aAA~a 521 (603)
|.=..- +. ---+|+..-+=||.-|. |+++.. ..+-+-.+.-|++
T Consensus 149 Pii~~~----~~--~~~g~~i~~i~GilnGT~nyIl~~m~~g~~f~~al~eAq~ 196 (326)
T PRK06392 149 PLFSLR----DY--STLPSRIKNFRGIVSSTINYVIRQEANGRGFLDVVKIAQK 196 (326)
T ss_pred chhhhh----hh--hcccCCEEEEEEEEeChHHHHHhhccCCCCHHHHHHHHHH
Confidence 543321 11 12235667777777776 455542 3333333333333
No 427
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=39.50 E-value=58 Score=31.64 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 307 ll~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+.++...+.-... ++|+|+|+|+.|..++++.. ..| .+++.++++
T Consensus 122 a~~~l~~~~~~~~~---~~vli~g~~~~G~~~~~~a~-----~~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPG---DTVLVLGAGGVGLLAAQLAK-----AAG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHH-----HcC-------CeEEEEcCC
Confidence 33444444443445 89999999885555544332 234 257777664
No 428
>PRK10262 thioredoxin reductase; Provisional
Probab=39.30 E-value=26 Score=36.42 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.8
Q ss_pred ceEEEeCcchhHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (603)
.+|||+|||.||+..|..+..
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 789999999999999887765
No 429
>PRK13984 putative oxidoreductase; Provisional
Probab=39.26 E-value=28 Score=39.97 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=26.8
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..+++|+|+|.||+..|..|... |. ++.++|+.
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~-----G~-------~v~vie~~ 315 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATM-----GY-------EVTVYESL 315 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 37899999999999999988653 54 57888765
No 430
>PRK08618 ornithine cyclodeaminase; Validated
Probab=38.99 E-value=1.2e+02 Score=32.46 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=61.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.+++|+|+|..|-.++..+... .++ ++|.++|+. ..+ .......+.... ... .....+++++
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~--a~~~~~~~~~~~-~~~-~~~~~~~~~~ 189 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK--AYAFAQEIQSKF-NTE-IYVVNSADEA 189 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH--HHHHHHHHHHhc-CCc-EEEeCCHHHH
Confidence 7899999999887776555442 244 578888874 111 122222221110 000 0124578999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEecCCCC-CccCCCHHHHhcccCCcEEE
Q 007456 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTAADAFKHAGENIVF 467 (603)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Ft~evv~~M~~~~~erPIIF~LSNPt-~~aE~tpeda~~wt~Grai~ 467 (603)
++. .|++|-++..+ ..|+ ++++ +.--|.++--.+ .+.|+.+ +.+. +...+|
T Consensus 190 ~~~--aDiVi~aT~s~~p~i~-~~l~-------~G~hV~~iGs~~p~~~E~~~-~~~~--~a~~vv 242 (325)
T PRK08618 190 IEE--ADIIVTVTNAKTPVFS-EKLK-------KGVHINAVGSFMPDMQELPS-EAIA--RANKVV 242 (325)
T ss_pred Hhc--CCEEEEccCCCCcchH-HhcC-------CCcEEEecCCCCcccccCCH-HHHh--hCCEEE
Confidence 976 79988665432 2344 4443 344466664333 3678888 4443 333455
No 431
>PRK07589 ornithine cyclodeaminase; Validated
Probab=38.95 E-value=1.2e+02 Score=33.03 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=63.2
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.++.|+|+|.-+..-++.++... .+ ++|+++|+. .. ....+...+.+..-+. ....+++|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr----~i------~~V~v~~r~----~~--~a~~~~~~~~~~~~~v---~~~~~~~~a 190 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL----GI------EEIRLYDID----PA--ATAKLARNLAGPGLRI---VACRSVAEA 190 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC----Cc------eEEEEEeCC----HH--HHHHHHHHHHhcCCcE---EEeCCHHHH
Confidence 78999999998877766666531 23 678887763 11 1122222221111011 124689999
Q ss_pred hcccCCcEEEeecCCC---CCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHHH
Q 007456 404 VRKVKPHVLLGLSGVG---GVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAADA 457 (603)
Q Consensus 404 V~~vkptvLIG~S~~~---g~Ft~evv~~M~~~~~erPIIF~L-SNPt~~aE~tpeda 457 (603)
+++ .||++.+++.. .+|..++++.= + -|-++ |+--.+.|+.++-.
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkpG----~---hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEPG----M---HINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCCC----c---EEEecCCCCCCcccCCHHHH
Confidence 988 79999876532 56888888641 1 35555 34334569998753
No 432
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.79 E-value=30 Score=37.98 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=19.6
Q ss_pred CceEEEeCcchhHHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (603)
..+|+|+|+|.+|+++|+.|.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~ 27 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKN 27 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC
Confidence 48999999999999998887653
No 433
>PRK06126 hypothetical protein; Provisional
Probab=38.76 E-value=29 Score=39.10 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=24.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 789999999999999977755 455 36666655
No 434
>PRK14694 putative mercuric reductase; Provisional
Probab=38.66 E-value=30 Score=38.37 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.++|+|||+||+..|..+.+. |+ ++.++|+.
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~-----g~-------~v~lie~~ 38 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATER-----GA-------RVTLIERG 38 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEEcc
Confidence 5699999999999999887764 43 68899975
No 435
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=38.65 E-value=26 Score=37.73 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=25.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 579999999999998877765 464 47777776
No 436
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=38.60 E-value=62 Score=34.17 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=31.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
++|+|+|+|.+|+-+|..|..... +.|. +.+|.+++...++
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~-~~g~-----~~~V~li~~~~~l 186 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLP-KRGL-----RGQVTLIAGASLL 186 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHH-hcCC-----CceEEEEeCCccc
Confidence 789999999999999999988665 4454 2478888544443
No 437
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=38.60 E-value=27 Score=43.26 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=28.0
Q ss_pred CCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+..||+|+|||.||+..|..|... |- ++.++|..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-----Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-----GH-------NVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEccc
Confidence 349999999999999999988753 43 58889974
No 438
>PRK07208 hypothetical protein; Provisional
Probab=38.57 E-value=28 Score=38.28 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.+|+|+|||-+|+..|..|.++
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~ 26 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKR 26 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHC
Confidence 6899999999999999888663
No 439
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=38.46 E-value=27 Score=38.29 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=26.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
-.++|+|||.||+..|..+.+. | .++.++|++.
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 5699999999999998887653 4 3799999863
No 440
>PLN02568 polyamine oxidase
Probab=38.45 E-value=32 Score=39.45 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.+|+|+|||.||+..|..|.+.
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhc
Confidence 7899999999999999999875
No 441
>PRK07190 hypothetical protein; Provisional
Probab=38.11 E-value=28 Score=39.23 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=24.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
..|+|+|||.+|+-.|-.+.. .|+ ++.++|+.-
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCCC
Confidence 579999999999988865533 465 477777763
No 442
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=38.09 E-value=31 Score=38.26 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=27.6
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcc
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv 370 (603)
+++++|+|||-+|+..|-.|.++ |. ++.+++++..+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~-----G~-------~v~vlE~~~~~ 36 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKR-----GY-------RVTLLEQHAQP 36 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 37899999999999998888654 54 57777776443
No 443
>PRK13748 putative mercuric reductase; Provisional
Probab=37.88 E-value=26 Score=39.54 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=26.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-.++|+|||+||+..|..+.++ | .++.++|+.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 5699999999999998877664 4 379999975
No 444
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.76 E-value=18 Score=43.69 Aligned_cols=121 Identities=26% Similarity=0.332 Sum_probs=69.6
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcc
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~ 395 (603)
++|.+ +++.++|||+.|+-.-+-+... |+.--+- ..|.+.|-+ +|.++ +|+.. .+=|+.+ . +.+
T Consensus 426 eKL~~---~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTDmD-~IEkS--NLnRQ--FLFR~~d-V-gk~ 489 (1013)
T KOG2012|consen 426 EKLAD---QKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTDMD-HIEKS--NLNRQ--FLFRPWD-V-GKP 489 (1013)
T ss_pred HHHhh---CcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEeccc-hhhhc--cccce--eeccccc-c-Cch
Confidence 66778 9999999999997665555443 4421111 246655554 23332 34421 1123321 1 111
Q ss_pred cCCCHHHHhcccCCcEEE-------eecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007456 396 EGASLLEVVRKVKPHVLL-------GLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (603)
Q Consensus 396 ~~~~L~e~V~~vkptvLI-------G~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~Grai~A 468 (603)
....-.+|+....|++.| |--| -++|+.+--+..-- |+=||=|= ||-.|-|+||+|=
T Consensus 490 KSe~AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld~------VanALDNV---------dAR~YvD~RCv~~ 553 (1013)
T KOG2012|consen 490 KSEVAAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLDG------VANALDNV---------DARRYVDRRCVYY 553 (1013)
T ss_pred HHHHHHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhHH------HHHhhcch---------hhhhhhhhhhhhh
Confidence 223577889999999987 3332 36788877776621 33344443 4567778888873
No 445
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=37.71 E-value=27 Score=41.51 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=59.6
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc--------cCCCHHHHhcccCCcEEEEcCCCC
Q 007456 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN--------AECTAADAFKHAGENIVFASGSPF 473 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~--------aE~tpeda~~wt~Grai~AtGSPf 473 (603)
++=+.++|+++|..+| ...=-.++-..+ .+-+|=|.+=.-||.+. .+-|.+++++..- . |+..-=.
T Consensus 413 ~l~~~~~~~~ilasnT-S~l~i~~ia~~~--~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~--~-~~~~lgk 486 (714)
T TIGR02437 413 EVEQHVREDAILASNT-STISISLLAKAL--KRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVV--A-YASKMGK 486 (714)
T ss_pred HHHhhCCCCcEEEECC-CCCCHHHHHhhc--CCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHH--H-HHHHcCC
Confidence 3334578999998876 333333444444 14455588889999752 2334444443211 0 1111113
Q ss_pred CceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHH
Q 007456 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 519 (603)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA 519 (603)
.||..+ ..||-.=|-..+|-+--+..+...- ++.+-+-.|.
T Consensus 487 ~pv~v~----d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 487 TPIVVN----DCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred EEEEeC----CcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 344431 4678888888888776665555544 5666666654
No 446
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=37.70 E-value=24 Score=41.81 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.5
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.+|+|+|||.||+..|-.|...
T Consensus 82 ~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 82 SRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred CCEEEECCCHHHHHHHHHHHhc
Confidence 8899999999999998887663
No 447
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=37.68 E-value=29 Score=42.87 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=27.1
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 38999999999999999888764 43 57788876
No 448
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=37.67 E-value=13 Score=39.87 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=50.7
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCCHHHHh
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~L~e~V 404 (603)
|+|+|+|..|-.+++.|.+.. .. .+|.+.|++--=-+.- ..+...+..+.+-+ ..+..+|.+.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~~------~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----PF------EEVTVADRNPEKAERLAEKLLGDRVEAVQVD-----VNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----CE-------EEEEEESSHHHHHHHHT--TTTTEEEEE-------TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC----CC------CcEEEEECCHHHHHHHHhhccccceeEEEEe-----cCCHHHHHHHH
Confidence 789999999999998887641 11 2788888851100000 00011111111110 01234588999
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007456 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (603)
Q Consensus 405 ~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF 441 (603)
+. .|++|-+++.. +...++++-.+ ...+.|=
T Consensus 66 ~~--~dvVin~~gp~--~~~~v~~~~i~--~g~~yvD 96 (386)
T PF03435_consen 66 RG--CDVVINCAGPF--FGEPVARACIE--AGVHYVD 96 (386)
T ss_dssp TT--SSEEEE-SSGG--GHHHHHHHHHH--HT-EEEE
T ss_pred hc--CCEEEECCccc--hhHHHHHHHHH--hCCCeec
Confidence 88 59999988643 88888887644 3344444
No 449
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=37.63 E-value=2.8e+02 Score=27.18 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCeEEEeecCCCchHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc
Q 007456 253 DEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG 332 (603)
Q Consensus 253 defv~av~~~~P~~~Iq~EDf~~~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAG 332 (603)
+++++++.+..|+. |-+-|.+..- ..+ -+++..-..|.. +|+-...+.+.++|--.. .. ..|+|.|=|
T Consensus 2 ~~~~~~l~~~l~d~-iiv~d~G~~~-~~~-~~~~~~~~~~~~--~gsmG~~lpaAiGa~la~----~~---~Vv~i~GDG 69 (181)
T TIGR03846 2 IDAIRAIASYLEDE-LVVSNIGVPS-KEL-YAIRDRPLNFYM--LGSMGLASSIGLGLALAT----DR---TVIVIDGDG 69 (181)
T ss_pred HHHHHHHHHhCCCC-EEEecCCHhH-HHH-HhhhcCCCCeee--ccccccHHHHHHHHHHcC----CC---cEEEEEcch
Confidence 57889999999954 4446877543 333 333222111111 788777787777765433 34 778899999
Q ss_pred hhHHHHHHHHHH
Q 007456 333 SAGLGVLKMAVQ 344 (603)
Q Consensus 333 sAg~GiA~li~~ 344 (603)
+..+++.++...
T Consensus 70 ~f~m~~~el~ta 81 (181)
T TIGR03846 70 SLLMNLGVLPTI 81 (181)
T ss_pred HHHhhhhHHHHH
Confidence 999998666554
No 450
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=37.55 E-value=25 Score=37.78 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=52.5
Q ss_pred hHhHHHHHHHHHHhCCCeEE-EeecCC---CchHHHHHHHHhhcCCccccCCchhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 007456 249 LSIVDEFMEAVHARWPKAIV-QFEDFQ---MKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQ 324 (603)
Q Consensus 249 ~~~vdefv~av~~~~P~~~I-q~EDf~---~~naf~iL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~ 324 (603)
+.|...|-+.+++++-.-+| .++|+. .+--..-++||..++..+.- +-+.. -.++|++ .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ry~r~l~l~~~-~~~~~-------------~Q~kL~~---s 77 (318)
T TIGR03603 15 ENFVSTFKEIVKKLVKGITISDEDAYENDLETLTKFNLITIIDNLTLKPM-LIVED-------------YQKHLKK---S 77 (318)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHhhhhccCHHHHHHHHHHhcCccc-cCcHH-------------HHHHHhh---C
Confidence 34566666667777766677 666652 12224557899888755331 00000 1245556 8
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
+|+ +|.-|.-+|..|+. .+ ++|.++|.+
T Consensus 78 ~Vl---~GGLGs~va~~La~-GV-----------g~L~ivD~D 105 (318)
T TIGR03603 78 KVL---LGKFGANIAYNLCN-NV-----------GALFISDKT 105 (318)
T ss_pred eee---cccchHHHHHHHhC-CC-----------CEEEEEcCC
Confidence 888 66667666666555 44 689999987
No 451
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=37.37 E-value=1.5e+02 Score=31.58 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=73.9
Q ss_pred cCCCccccccCChhhHHHHHhcCCCCCceEEEEecC----ccccccCCCCCCcccccchhHHHHHHhcCCCCCceeeEEe
Q 007456 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG----SRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVML 220 (603)
Q Consensus 145 r~prGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG----~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~L 220 (603)
++..|+-++..|...+...+...-...+-|+.+-.. .+..-+|--..+.+|-..++..... .++ ....+=++
T Consensus 79 ~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~-l~~--g~gki~il- 154 (336)
T PRK15408 79 QGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQ-VGK--DKAKVAFF- 154 (336)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHh-cCC--CCCEEEEE-
Confidence 568899998888776666666543345555554221 1222222111123444444443332 221 11122222
Q ss_pred eccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCe-E--EEeecCCCchHHH----HHHHHhhc--CCc
Q 007456 221 DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-I--VQFEDFQMKWAFE----TLERYRKR--FCM 291 (603)
Q Consensus 221 DvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~--Iq~EDf~~~naf~----iL~ryr~~--~~~ 291 (603)
.|.-+ . ....+..+.|.+.+++.+|+. + .++.|+....+++ +|.+|-+- +.|
T Consensus 155 -~g~~~-----~-------------~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~~~a~~~~~~lL~~~pdi~aI~~ 215 (336)
T PRK15408 155 -YSSPT-----V-------------TDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIA 215 (336)
T ss_pred -ECCCC-----C-------------ccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcHHHHHHHHHHHHHHCCCCcEEEE
Confidence 22110 0 001134567777777888986 2 2455666666664 44444332 233
Q ss_pred cccCCchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch
Q 007456 292 FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS 333 (603)
Q Consensus 292 FnDDiQGTaaV~lAgll~A~r~tg~~l~dl~~~riv~~GAGs 333 (603)
+| | ..+.|.+.|++-.|+. + |.++|-+.
T Consensus 216 ~~-~------~~~~Ga~~Al~~~g~~--~-----v~VvG~D~ 243 (336)
T PRK15408 216 PD-A------NALPAAAQAAENLKRD--K-----VAIVGFST 243 (336)
T ss_pred CC-C------ccHHHHHHHHHhCCCC--C-----EEEEEeCC
Confidence 32 2 2444677788887753 4 55666553
No 452
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=37.34 E-value=1e+02 Score=33.68 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=26.2
Q ss_pred ceEEEeC-cchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~G-AGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 7899999 999999999888764 43 48888874
No 453
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=37.31 E-value=98 Score=35.08 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=78.2
Q ss_pred ceEEEeCc-chhHHHHHHHHHHHHHH--hcCCChhhhcCeEEEEecCCcccCCC-CCCChhhhccccccCCcCCcccCCC
Q 007456 324 QKIVVVGA-GSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~--~~Gls~~eA~~~i~lvD~~GLv~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~ 399 (603)
.||.|+|| |..|..+|-.|+..-+- .+|+. .+++++|.+-=..++- -+|.+..-++.+.. .-..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~-----~eLvliD~~~~~a~G~amDL~daa~~~~~~v------~i~~~ 169 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIA-----LKLLGSERSKQALEGVAMELEDSLYPLLREV------SIGID 169 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcc-----cEEEEEcCCcchhHHHHHHHHHhhhhhcCce------EEecC
Confidence 79999999 99999999988764110 01332 4789998742222221 24444443333211 00123
Q ss_pred HHHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--C
Q 007456 400 LLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--E 463 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~--G 463 (603)
-.|..++ .|++|=+.+.+ |- .=+++.+.+.+.++..-||+-.|||.. ....-+++++. -
T Consensus 170 ~ye~~kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD---v~t~v~~k~sg~~~ 244 (444)
T PLN00112 170 PYEVFQD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN---TNALICLKNAPNIP 244 (444)
T ss_pred CHHHhCc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH---HHHHHHHHHcCCCC
Confidence 4566777 68887554443 31 124556666421478999999999985 55666666652 1
Q ss_pred cEEEEcCCCCCc
Q 007456 464 NIVFASGSPFEN 475 (603)
Q Consensus 464 rai~AtGSPf~p 475 (603)
+-+|.||.=.+.
T Consensus 245 ~rViGtgT~LDs 256 (444)
T PLN00112 245 AKNFHALTRLDE 256 (444)
T ss_pred cceEEeeccHHH
Confidence 346666644443
No 454
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=37.08 E-value=26 Score=43.32 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=32.5
Q ss_pred CCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
++|++ .+|+|+|+|.-|.-||..|+.+++ ++|.++|.+-
T Consensus 20 ~kL~~---s~VLIiG~gGLG~EiaKnL~laGV-----------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAK---SNVLISGMGGLGLEIAKNLVLAGV-----------KSVTLHDTEK 58 (1008)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCe
Confidence 34556 999999999999999999988754 6899999873
No 455
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.89 E-value=30 Score=38.36 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.4
Q ss_pred CceEEEeCcchhHHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (603)
..||+|+|.|-.|+++|++|...
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~ 36 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKL 36 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHC
Confidence 38999999999999999988764
No 456
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=36.88 E-value=44 Score=35.93 Aligned_cols=134 Identities=21% Similarity=0.313 Sum_probs=73.9
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC-CCCCCChhhhccccccCCcCCcccCCCHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~-~r~~l~~~k~~fa~~~~~~~~~~~~~~L~ 401 (603)
..||.++|+|..|+++|-.|+.- |++ +++.++|-.==-.+ .+-+|++. .+|-+...-. ..++..
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MDLqH~-s~f~~~~~V~----~~~Dy~ 84 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMDLQHG-SAFLSTPNVV----ASKDYS 84 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhhhccc-cccccCCceE----ecCccc
Confidence 49999999999999999888763 554 57899996421112 22345433 3444432110 011111
Q ss_pred HHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcE
Q 007456 402 EVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~M~~~~~erPIIF~LSNPt~~aE~tpeda~~wt~--Gra 465 (603)
. - ...++.|=+.+. +|- .=+.+|.... ++.+.-|+.-.|||.. +.-.-+++.|. -..
T Consensus 85 ~-s--a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv-~ySpd~~llvvSNPVD---ilTYv~wKLSgfP~nR 157 (332)
T KOG1495|consen 85 V-S--ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALV-KYSPDCILLVVSNPVD---ILTYVTWKLSGFPKNR 157 (332)
T ss_pred c-c--CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecCchH---HHHHHHHHHcCCcccc
Confidence 1 1 113444422221 121 1245566664 3889999999999985 44444444331 133
Q ss_pred EEEcCCCCCceec
Q 007456 466 VFASGSPFENVDL 478 (603)
Q Consensus 466 i~AtGSPf~pv~~ 478 (603)
+|.||.=.+...+
T Consensus 158 ViGsGcnLDsaRF 170 (332)
T KOG1495|consen 158 VIGSGCNLDSARF 170 (332)
T ss_pred eeccCcCccHHHH
Confidence 5577766666544
No 457
>PRK13938 phosphoheptose isomerase; Provisional
Probab=36.76 E-value=95 Score=31.12 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=23.0
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhhh-cCCCCCeEEecCCCC
Q 007456 408 KPHVLLGLSGVGGVFNEEVLKAMRE-SDSVKPAIFAMSNPT 447 (603)
Q Consensus 408 kptvLIG~S~~~g~Ft~evv~~M~~-~~~erPIIF~LSNPt 447 (603)
+-|++|++|..| -|+++++.+.. +...-|+|.=-+||.
T Consensus 113 ~~DllI~iS~SG--~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 113 PGDTLFAISTSG--NSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 468999999744 37899988832 123344444333333
No 458
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=36.74 E-value=22 Score=36.20 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=24.6
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~ 372 (603)
+||+|+|+||.-+|..|.+. | ..+|.++.+-+....
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCTT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCcc
Confidence 79999999999888887542 2 146888877655443
No 459
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=36.71 E-value=29 Score=39.17 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=18.7
Q ss_pred ceEEEeCcchhHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (603)
.+|+|+|||.+|+..|-.|..
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 689999999999999988765
No 460
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=36.68 E-value=94 Score=37.73 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=63.9
Q ss_pred CceEEEeCcchhHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEecCCcccCCCC-CCChhhhccccccCCcCCcccCC
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGA 398 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~---~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~-~l~~~k~~fa~~~~~~~~~~~~~ 398 (603)
..+|.++|-|..|.|++++|.+- +.++.|+.. +=.-+.||++.+.+.+. ++......|...... .+..
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~----~~~~ 529 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVE----WDEE 529 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCC----ccHH
Confidence 37899999999999999999774 222345432 12346799988877653 222222222221111 1234
Q ss_pred CHHHHhcccCCc--EEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007456 399 SLLEVVRKVKPH--VLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (603)
Q Consensus 399 ~L~e~V~~vkpt--vLIG~S~~~g~Ft~evv~~M~~~~~erPIIF 441 (603)
.+.|.+....++ |+|=+++ +.-....+.+++. +...+|-
T Consensus 530 ~~~e~i~~~~~~~~vvVd~t~-~~~~~~~~~~aL~---~G~~VVt 570 (810)
T PRK09466 530 SLFLWLRAHPYDELVVLDVTA-SEQLALQYPDFAS---HGFHVIS 570 (810)
T ss_pred HHHHHHhhcCCCCcEEEECCC-ChHHHHHHHHHHH---cCCEEEc
Confidence 567777765564 8888886 3334456667773 3556664
No 461
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=36.68 E-value=16 Score=37.19 Aligned_cols=26 Identities=42% Similarity=0.732 Sum_probs=18.2
Q ss_pred EEEEecCccccccCCCCCCcccccchhHH
Q 007456 174 MIVLTDGSRILGLGDLGVQGIGIPIGKLD 202 (603)
Q Consensus 174 viVVTDG~rILGLGDlG~~GmgI~iGKl~ 202 (603)
++|||||+|||-.-=.| =.|||-|+-
T Consensus 51 ~fi~TDg~~IlavDt~g---y~ipiRKSR 76 (214)
T PF12227_consen 51 CFIVTDGERILAVDTIG---YKIPIRKSR 76 (214)
T ss_pred eEEEecCCceEEEEecC---CCceeeecc
Confidence 79999999999754443 356665554
No 462
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=36.32 E-value=26 Score=37.37 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=23.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-----~G~-------~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-----KGI-------KTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-----CCC-------eEEEecCC
Confidence 369999999999999877643 465 46666653
No 463
>PRK06849 hypothetical protein; Provisional
Probab=36.31 E-value=22 Score=38.29 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=46.0
Q ss_pred CceEEEeCcch-hHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChh-hhccccccCCcCCcccCCCH
Q 007456 323 DQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-AAPFAKDPGDFMGLREGASL 400 (603)
Q Consensus 323 ~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~-k~~fa~~~~~~~~~~~~~~L 400 (603)
.++|+|.|++. .|+++|+.+.++ |. +++++|++..-.. + ...+ ...|.-+.+......-...|
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~-----G~-------~Vi~~d~~~~~~~-~--~s~~~d~~~~~p~p~~d~~~~~~~L 68 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNA-----GH-------TVILADSLKYPLS-R--FSRAVDGFYTIPSPRWDPDAYIQAL 68 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-----CC-------EEEEEeCCchHHH-H--HHHhhhheEEeCCCCCCHHHHHHHH
Confidence 38999999987 588888776653 54 7999999732110 0 0000 11111111110000012458
Q ss_pred HHHhcccCCcEEEeecC
Q 007456 401 LEVVRKVKPHVLLGLSG 417 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~ 417 (603)
.++++.-++|++|=++.
T Consensus 69 ~~i~~~~~id~vIP~~e 85 (389)
T PRK06849 69 LSIVQRENIDLLIPTCE 85 (389)
T ss_pred HHHHHHcCCCEEEECCh
Confidence 88899989999997764
No 464
>PLN02985 squalene monooxygenase
Probab=36.12 E-value=31 Score=39.20 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=25.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
.+|+|+|||.||+..|-.|.+ .|. ++.++|++
T Consensus 44 ~DViIVGAG~aGlalA~aLa~-----~G~-------~V~vlEr~ 75 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAK-----DGR-------RVHVIERD 75 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEECc
Confidence 689999999999999977754 354 57777765
No 465
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=36.12 E-value=29 Score=38.46 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=25.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
--++|+|||+||+..|..+.+ .|. ++.++|+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~-----~G~-------~V~liE~~ 34 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAE-----HGA-------KALLVEAK 34 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------cEEEeccc
Confidence 358999999999999887655 353 68899985
No 466
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.09 E-value=35 Score=37.67 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=20.7
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHH
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~ 345 (603)
|...||.|+|.|-.|+.+|++|...
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~ 31 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAG 31 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 4448999999999999998887653
No 467
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=36.04 E-value=38 Score=39.46 Aligned_cols=149 Identities=13% Similarity=0.185 Sum_probs=88.0
Q ss_pred CCChhhhhHhHHHHHHHHHHhCCC-eEEEeecCCCchHHHHHHHHhhc------CCccccCCchhHHHHHHHHHHHHH--
Q 007456 242 RLEGEEYLSIVDEFMEAVHARWPK-AIVQFEDFQMKWAFETLERYRKR------FCMFNDDIQGTAGVALAGLLGTVR-- 312 (603)
Q Consensus 242 R~~g~~Y~~~vdefv~av~~~~P~-~~Iq~EDf~~~naf~iL~ryr~~------~~~FnDDiQGTaaV~lAgll~A~r-- 312 (603)
+++|=.-..-.+ |.+.|++.-.+ .+|-.=..+...-.+++++.... +|-+-|=++ ..+.+|
T Consensus 157 ~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~---------~~~~lreI 226 (588)
T COG1086 157 KIRGVPVLGRIE-IERVVEELGIQLILIAIPSASQEERRRILLRLARTGIAVRILPQLTDLKD---------LNGQLREI 226 (588)
T ss_pred EEeceeeechhH-HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHH---------hccccccC
Confidence 445533333445 66666665554 57777788888888888888754 354544333 112222
Q ss_pred ----HhCCCC---------CCCCCceEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCC
Q 007456 313 ----AQGLSL---------TDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (603)
Q Consensus 313 ----~tg~~l---------~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~ 378 (603)
+.|++. ..+++++|++-|| ||.|-.++++|++. +- ++|.++|++=. ++.
T Consensus 227 ~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~-----~p------~~i~l~~~~E~------~~~ 289 (588)
T COG1086 227 EIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKF-----NP------KEIILFSRDEY------KLY 289 (588)
T ss_pred CHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhc-----CC------CEEEEecCchH------HHH
Confidence 223321 1234599999998 68899898888875 21 68999987521 222
Q ss_pred hhhhcccccc--CC----cCCcccCCCHHHHhcccCCcEEEeecC
Q 007456 379 PAAAPFAKDP--GD----FMGLREGASLLEVVRKVKPHVLLGLSG 417 (603)
Q Consensus 379 ~~k~~fa~~~--~~----~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (603)
.-.++|.+.- .. +....+...+.++++..|||+++=+.+
T Consensus 290 ~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 290 LIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred HHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEhhh
Confidence 2223333210 00 011224567999999999999997665
No 468
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=36.02 E-value=27 Score=40.74 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=25.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
..|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 7899999999999998887652 254 46777766
No 469
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=35.83 E-value=50 Score=28.87 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=23.6
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
|||+|.|..|..+++.|.+. + .++.++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECC
Confidence 78999999999998888762 1 479999986
No 470
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=35.78 E-value=33 Score=34.82 Aligned_cols=99 Identities=24% Similarity=0.368 Sum_probs=53.6
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCC---cCCc-ccCCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD---FMGL-REGAS 399 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~---~~~~-~~~~~ 399 (603)
.+|+|+|+|..|..+|+.|.+. | .++.++|.+--... .|+.+... ..+. .+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~----------~~~~~~~~~~~v~gd~t~~~~ 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVE----------EFLADELDTHVVIGDATDEDV 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHH----------HHhhhhcceEEEEecCCCHHH
Confidence 3799999999999999998774 3 36888888632221 11110000 0000 12245
Q ss_pred HHHH-hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe-cCCCCC
Q 007456 400 LLEV-VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA-MSNPTM 448 (603)
Q Consensus 400 L~e~-V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~-LSNPt~ 448 (603)
|.++ +.+ .|++|-+++. --.--++-.|+.+...-|-|.+ ..||..
T Consensus 59 L~~agi~~--aD~vva~t~~--d~~N~i~~~la~~~~gv~~viar~~~~~~ 105 (225)
T COG0569 59 LEEAGIDD--ADAVVAATGN--DEVNSVLALLALKEFGVPRVIARARNPEH 105 (225)
T ss_pred HHhcCCCc--CCEEEEeeCC--CHHHHHHHHHHHHhcCCCcEEEEecCHHH
Confidence 7777 655 7999877753 1223344444433223444433 445543
No 471
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.77 E-value=30 Score=37.98 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.||+|+|+|.+|+..|+.+...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~ 22 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQ 22 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHC
Confidence 3799999999999998887764
No 472
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.73 E-value=1e+02 Score=31.53 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=53.9
Q ss_pred CeEEEEecCCcccCCCCCCChhhhcccccc-CC-cCCcccCCCHHHHhc--ccCCc-EEEeecCCCCCCCHHHHHHhhhc
Q 007456 359 NKFFLLDKDGLITKERKNLDPAAAPFAKDP-GD-FMGLREGASLLEVVR--KVKPH-VLLGLSGVGGVFNEEVLKAMRES 433 (603)
Q Consensus 359 ~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~-~~-~~~~~~~~~L~e~V~--~vkpt-vLIG~S~~~g~Ft~evv~~M~~~ 433 (603)
+.++++|.+|.+.....+++-.+ ..++.. -+ +. ..+..|++++-+ ....+ |+||..+ ++++.++.+++.
T Consensus 44 ~~l~ivDldga~~g~~~n~~~i~-~i~~~~~~pv~~-gGGIrs~edv~~l~~~G~~~vivGtaa----~~~~~l~~~~~~ 117 (228)
T PRK04128 44 DKIHVVDLDGAFEGKPKNLDVVK-NIIRETGLKVQV-GGGLRTYESIKDAYEIGVENVIIGTKA----FDLEFLEKVTSE 117 (228)
T ss_pred CEEEEEECcchhcCCcchHHHHH-HHHhhCCCCEEE-cCCCCCHHHHHHHHHCCCCEEEECchh----cCHHHHHHHHHH
Confidence 57999999999865433433222 233321 11 11 013467777654 22343 7888554 489999999875
Q ss_pred CCCCCeEEecC---------CCCCccCCCHHHHhcc
Q 007456 434 DSVKPAIFAMS---------NPTMNAECTAADAFKH 460 (603)
Q Consensus 434 ~~erPIIF~LS---------NPt~~aE~tpeda~~w 460 (603)
+ .+ ||++|= +-...++.+++|+.+|
T Consensus 118 ~-g~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~ 151 (228)
T PRK04128 118 F-EG-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEM 151 (228)
T ss_pred c-CC-EEEEEEccCCeEecCCCeEcCCCCHHHHHHH
Confidence 6 44 888764 2223345666665554
No 473
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=35.69 E-value=28 Score=38.33 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~ 346 (603)
.+++++|.|++|+|+|..+..-+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl 62 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKL 62 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhc
Confidence 89999999999999999987743
No 474
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=35.58 E-value=28 Score=30.27 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=28.9
Q ss_pred ccccHHHHHHHHHHHHhccccccCCCCCCCCchh----HHHHHHHhhhcc
Q 007456 64 RVISFEQQYARFMESFRSLEKNTEGQPNKVVSLA----KWRILNRLHDRN 109 (603)
Q Consensus 64 ~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~----Ky~~L~~L~~rN 109 (603)
.|.++|++++||...++.++ -.+. |-+||+.|-.+-
T Consensus 27 svgd~e~eLerCK~sirrLe----------qevnkERFrmiYLQTlLAkE 66 (79)
T PF09036_consen 27 SVGDIEQELERCKASIRRLE----------QEVNKERFRMIYLQTLLAKE 66 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Confidence 57789999999999999987 3444 468999887763
No 475
>PLN02366 spermidine synthase
Probab=35.53 E-value=75 Score=34.03 Aligned_cols=103 Identities=15% Similarity=0.239 Sum_probs=55.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC-CCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~-~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
.||+++|.|..+ +++.+++. -+. .+|.+||-+.-+.+ .++.++.....+..+.-.+ ...+-.+
T Consensus 93 krVLiIGgG~G~--~~rellk~----~~v------~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~v----i~~Da~~ 156 (308)
T PLN02366 93 KKVLVVGGGDGG--VLREIARH----SSV------EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNL----HIGDGVE 156 (308)
T ss_pred CeEEEEcCCccH--HHHHHHhC----CCC------CeEEEEECCHHHHHHHHHhhhhhccccCCCceEE----EEChHHH
Confidence 799999999865 34444332 122 58999998886654 2222322211121111000 1233333
Q ss_pred Hhccc---CCcEEEeecCCC-----CCCCHHHHHHhhhcCCCCCeEEe
Q 007456 403 VVRKV---KPHVLLGLSGVG-----GVFNEEVLKAMRESDSVKPAIFA 442 (603)
Q Consensus 403 ~V~~v---kptvLIG~S~~~-----g~Ft~evv~~M~~~~~erPIIF~ 442 (603)
.++.. +-|++|-=+..| ..||++..+.+.+..++.=++..
T Consensus 157 ~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 157 FLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred HHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 34332 468888654432 45788999988765666555543
No 476
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=35.36 E-value=36 Score=37.83 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=26.1
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCC
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (603)
-.++|+|+|+||+..|..+.+. | .++.++|+++
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~~ 36 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGRS 36 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecCC
Confidence 4699999999999998876553 4 3799999753
No 477
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=35.24 E-value=1.3e+02 Score=30.37 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=22.0
Q ss_pred CcEEEeecCCCCCCCHHHHHHhhhcCC-CCCeEEecCC
Q 007456 409 PHVLLGLSGVGGVFNEEVLKAMRESDS-VKPAIFAMSN 445 (603)
Q Consensus 409 ptvLIG~S~~~g~Ft~evv~~M~~~~~-erPIIF~LSN 445 (603)
-|++|++|-. | -|+++++.|..... .-||| ++++
T Consensus 48 ~d~~i~iS~s-G-~t~~~~~~~~~a~~~g~~ii-~iT~ 82 (268)
T TIGR00393 48 NDVVLMISYS-G-ESLELLNLIPHLKRLSHKII-AFTG 82 (268)
T ss_pred CCEEEEEeCC-C-CCHHHHHHHHHHHHcCCcEE-EEEC
Confidence 5899999963 4 68999998843222 23544 4554
No 478
>PRK06199 ornithine cyclodeaminase; Validated
Probab=35.15 E-value=1.4e+02 Score=33.03 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=51.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e~ 403 (603)
.++.|+|+|.-+...++.++... ..+ ++|+++|+.- +....+.+.+.+.-..+.......+.+|+
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~---~~i------~~V~v~~r~~------~~a~~f~~~~~~~~~~~~~v~~~~s~~ea 220 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVC---PGI------DTIKIKGRGQ------KSLDSFATWVAETYPQITNVEVVDSIEEV 220 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc---CCc------cEEEEECCCH------HHHHHHHHHHHHhcCCCceEEEeCCHHHH
Confidence 78999999998877776665531 122 5788887741 11222222222110000001124789999
Q ss_pred hcccCCcEEEeecC-C------CCCCCHHHHH
Q 007456 404 VRKVKPHVLLGLSG-V------GGVFNEEVLK 428 (603)
Q Consensus 404 V~~vkptvLIG~S~-~------~g~Ft~evv~ 428 (603)
|+. .||++-+.+ . ...|..+++|
T Consensus 221 v~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 221 VRG--SDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred HcC--CCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 988 799997543 1 2678888876
No 479
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=35.01 E-value=1.1e+02 Score=32.90 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=25.4
Q ss_pred CHHHHhcccCCcE-EEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007456 399 SLLEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (603)
Q Consensus 399 ~L~e~V~~vkptv-LIG~S~~~g~Ft~evv~~M~~~~~erPIIF 441 (603)
.|.+.... .|+ ++|-|-..+ |...++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma---~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA---FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH---hCCCEEE
Confidence 36666655 687 677664333 5556899996 5899997
No 480
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=34.98 E-value=1.2e+02 Score=32.27 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=18.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.||.|+|||+.|.-.|-.|..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 4899999999999888877765
No 481
>PLN02735 carbamoyl-phosphate synthase
Probab=34.95 E-value=48 Score=41.46 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=45.8
Q ss_pred ceEEEeCcchhHHH-------HHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCccc
Q 007456 324 QKIVVVGAGSAGLG-------VLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (603)
Q Consensus 324 ~riv~~GAGsAg~G-------iA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~ 396 (603)
+||+|+|+|...+| -+.+++.++. +.|. +++++|++---......+.++ .|..+. .
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLk-e~G~-------~Vi~vd~np~t~~~~~~~aD~--~yi~p~-------~ 86 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALK-EEGY-------EVVLINSNPATIMTDPETADR--TYIAPM-------T 86 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHH-HcCC-------EEEEEeCCcccccCChhhCcE--EEeCCC-------C
Confidence 69999999998776 2456788887 6787 688999874210000112221 232221 1
Q ss_pred CCCHHHHhcccCCcEEE
Q 007456 397 GASLLEVVRKVKPHVLL 413 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLI 413 (603)
...+.++++.-+||++|
T Consensus 87 ~e~v~~ii~~e~~D~Ii 103 (1102)
T PLN02735 87 PELVEQVIAKERPDALL 103 (1102)
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 12477888889999988
No 482
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=34.73 E-value=1.5e+02 Score=28.11 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=17.3
Q ss_pred ceEEEeCcchhHHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~ 346 (603)
.||.|+|.|+.+. +|..+...+
T Consensus 12 ~rI~~~G~G~S~~-~A~~~a~~~ 33 (154)
T TIGR00441 12 GKVLICGNGGSAC-DAQHFAAEL 33 (154)
T ss_pred CEEEEEeCcHHHH-HHHHHHHHh
Confidence 8999999999874 677665544
No 483
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=34.64 E-value=1.3e+02 Score=28.73 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=17.2
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhh
Q 007456 408 KPHVLLGLSGVGGVFNEEVLKAMR 431 (603)
Q Consensus 408 kptvLIG~S~~~g~Ft~evv~~M~ 431 (603)
+-|++|++|..| -|+++++.+.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 369999999643 4799999883
No 484
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.48 E-value=33 Score=38.72 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.4
Q ss_pred CceEEEeCcchhHHHHHHHHHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (603)
..+++|+|||+||+..|+-|...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC
Confidence 48999999999999999888764
No 485
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=34.44 E-value=1.3e+02 Score=30.20 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=42.5
Q ss_pred eEEEeCc-chhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChh----hhccccccCCcCCcccCCC
Q 007456 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA----AAPFAKDPGDFMGLREGAS 399 (603)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~----k~~fa~~~~~~~~~~~~~~ 399 (603)
+|+|.|| |..|-.+++.|++. |- ..+++.+|+...-. ..+.+... ...+.. .++ .+..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~Dl---~~~~~ 64 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTYAG-NLENLADLEDNPRYRFVK--GDI---GDREL 64 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCcch-hhhhhhhhccCCCcEEEE--cCC---cCHHH
Confidence 5888887 77887777776553 21 12577777531100 01111111 011111 011 12346
Q ss_pred HHHHhcccCCcEEEeecCC
Q 007456 400 LLEVVRKVKPHVLLGLSGV 418 (603)
Q Consensus 400 L~e~V~~vkptvLIG~S~~ 418 (603)
+.++++..+||++|=+++.
T Consensus 65 ~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 65 VSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred HHHHHhhcCCCEEEEcccc
Confidence 8888888889999988864
No 486
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=34.44 E-value=40 Score=37.53 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=55.4
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChh---hhccccccCCcCCcccCCCH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA---AAPFAKDPGDFMGLREGASL 400 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~---k~~fa~~~~~~~~~~~~~~L 400 (603)
.+||++|||-.|-.+|..|++- |. .+|++.|+.= .+- ..+... +...+.-+ ..+...|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs~--~~~-~~i~~~~~~~v~~~~vD-----~~d~~al 62 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRSK--EKC-ARIAELIGGKVEALQVD-----AADVDAL 62 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCCH--HHH-HHHHhhccccceeEEec-----ccChHHH
Confidence 4799999999999999988763 32 4799988840 000 011111 22222211 1234579
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007456 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (603)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~ 432 (603)
.++|+. .++.|.+- |+-++..++++-.+
T Consensus 63 ~~li~~--~d~VIn~~--p~~~~~~i~ka~i~ 90 (389)
T COG1748 63 VALIKD--FDLVINAA--PPFVDLTILKACIK 90 (389)
T ss_pred HHHHhc--CCEEEEeC--CchhhHHHHHHHHH
Confidence 999998 48888765 78888888877654
No 487
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.68 E-value=39 Score=37.88 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=20.8
Q ss_pred CCCceEEEeCcchhHHHHHHHHHHH
Q 007456 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~ 345 (603)
+...+|+|+|.|-+|+++|++|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~ 29 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARH 29 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 3447999999999999988887764
No 488
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=33.64 E-value=70 Score=34.00 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhhhc-CCCCCeEEecCCCCC
Q 007456 408 KPHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSNPTM 448 (603)
Q Consensus 408 kptvLIG~S~~~g~Ft~evv~~M~~~-~~erPIIF~LSNPt~ 448 (603)
+-|++||+|..+. |++++..+... ...-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4699999997543 78888888321 223477776677775
No 489
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=33.61 E-value=87 Score=33.30 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=56.7
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccC-CCCCCChhh-hccccccCCcCCcccCCCHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAA-APFAKDPGDFMGLREGASLL 401 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~-~r~~l~~~k-~~fa~~~~~~~~~~~~~~L~ 401 (603)
.||+|+|.|.. |.++-+++.. . .+++++||-++-|.. .|+.++..- ..+ .+.-++ ...+-.
T Consensus 78 k~VLiiGgGdG--~tlRevlkh~----~------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i----~i~Dg~ 140 (282)
T COG0421 78 KRVLIIGGGDG--GTLREVLKHL----P------VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEI----IIDDGV 140 (282)
T ss_pred CeEEEECCCcc--HHHHHHHhcC----C------cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEE----EeccHH
Confidence 38999999887 4566665542 1 268999999887765 333333221 112 111110 112333
Q ss_pred HHhccc--CCcEEEeecCCC-----CCCCHHHHHHhhhcCCCCCeE
Q 007456 402 EVVRKV--KPHVLLGLSGVG-----GVFNEEVLKAMRESDSVKPAI 440 (603)
Q Consensus 402 e~V~~v--kptvLIG~S~~~-----g~Ft~evv~~M~~~~~erPII 440 (603)
+.|+.. |-|++|==|+-| ++||+|-.+.-.+.+++.=|+
T Consensus 141 ~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~ 186 (282)
T COG0421 141 EFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIF 186 (282)
T ss_pred HHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEE
Confidence 444422 468888555543 679999999876544444333
No 490
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=33.50 E-value=33 Score=40.96 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=58.1
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc---c-----CCCHHHHhcccCCcEEEEcCCCC
Q 007456 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN---A-----ECTAADAFKHAGENIVFASGSPF 473 (603)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~M~~~~~erPIIF~LSNPt~~---a-----E~tpeda~~wt~Grai~AtGSPf 473 (603)
++=+.++|+++|..+| ...=-.++-+.+ . +-+|=|.+=.-||... . +-|.+++++..- . |+.--=.
T Consensus 435 ~l~~~~~~~~ilasNT-Ssl~i~~la~~~-~-~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~--~-~~~~lgk 508 (737)
T TIGR02441 435 EVEAVVPPHCIIASNT-SALPIKDIAAVS-S-RPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAV--A-VGLKQGK 508 (737)
T ss_pred HHHhhCCCCcEEEEcC-CCCCHHHHHhhc-C-CccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHH--H-HHHHCCC
Confidence 3335578999998776 333223333333 2 4566688888899742 2 345555554321 1 1111112
Q ss_pred CceecCCCeeeccccccccccchhhHHHHHHhCCcccCHHHHHHHH
Q 007456 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 519 (603)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA 519 (603)
.||..+ ..||-.=|-..+|-+.-+..+..-- ++.+-+-.|.
T Consensus 509 ~pv~v~----d~pGFi~NRi~~~~~~ea~~lv~eG-v~~~~ID~a~ 549 (737)
T TIGR02441 509 VVIVVK----DGPGFYTTRCLGPMLAEVIRLLQEG-VDPKKLDKLT 549 (737)
T ss_pred eEEEEC----CcCCchHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 233331 4577777877787776665555433 4666666553
No 491
>PRK06116 glutathione reductase; Validated
Probab=33.03 E-value=36 Score=37.32 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=25.2
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecC
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (603)
-++|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~-----G-------~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMY-----G-------AKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecc
Confidence 499999999999988777653 4 368999985
No 492
>PRK07121 hypothetical protein; Validated
Probab=32.87 E-value=39 Score=37.68 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=25.9
Q ss_pred ceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
-.|||+|+|.||+..|-.+.+ .|. ++.++++...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae-----~G~-------~VillEK~~~ 54 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAA-----AGA-------RVLVLERAAG 54 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeCCCC
Confidence 679999999999988866544 343 6888887654
No 493
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.81 E-value=64 Score=40.17 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=46.0
Q ss_pred ceEEEeCcchhHHH-------HHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCccc
Q 007456 324 QKIVVVGAGSAGLG-------VLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (603)
Q Consensus 324 ~riv~~GAGsAg~G-------iA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~ 396 (603)
+||+|+|+|...+| -+.+++.++. +.|. +++++|++---......+.+ ..|..+. .
T Consensus 8 ~kvlviG~G~~~igq~~E~d~sg~q~~~aL~-e~G~-------~vi~v~~np~~~~~d~~~ad--~~y~ep~-------~ 70 (1068)
T PRK12815 8 QKILVIGSGPIVIGQAAEFDYSGTQACLALK-EEGY-------QVVLVNPNPATIMTDPAPAD--TVYFEPL-------T 70 (1068)
T ss_pred CEEEEECCCcchhcchhhhhhHHHHHHHHHH-HcCC-------EEEEEeCCcchhhcCcccCC--eeEECCC-------C
Confidence 69999999998776 3567888888 6787 68999976421100001111 0111110 1
Q ss_pred CCCHHHHhcccCCcEEEe
Q 007456 397 GASLLEVVRKVKPHVLLG 414 (603)
Q Consensus 397 ~~~L~e~V~~vkptvLIG 414 (603)
...|.++++..+||++|-
T Consensus 71 ~e~l~~ii~~e~~D~Iip 88 (1068)
T PRK12815 71 VEFVKRIIAREKPDALLA 88 (1068)
T ss_pred HHHHHHHHHHhCcCEEEE
Confidence 235778888889998884
No 494
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=32.79 E-value=42 Score=36.50 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.8
Q ss_pred ceEEEeCcchhHHHHHHHHHHH
Q 007456 324 QKIVVVGAGSAGLGVLKMAVQA 345 (603)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (603)
.+|+|+|||-||+..|..|.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~ 24 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE 24 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999888764
No 495
>PTZ00367 squalene epoxidase; Provisional
Probab=32.54 E-value=52 Score=38.13 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=22.5
Q ss_pred HhCCCCCCCCCceEEEeCcchhHHHHHHHHHH
Q 007456 313 AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (603)
Q Consensus 313 ~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~ 344 (603)
+..++..+=.+-+|+|+|||.||+..|-.|..
T Consensus 23 ~~~~~~~~~~~~dViIVGaGiaGlalA~aLar 54 (567)
T PTZ00367 23 LRFKPARTNYDYDVIIVGGSIAGPVLAKALSK 54 (567)
T ss_pred HccCccccccCccEEEECCCHHHHHHHHHHHh
Confidence 44455422112689999999999999987754
No 496
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=32.54 E-value=59 Score=35.82 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=48.2
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccc
Q 007456 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD 387 (603)
Q Consensus 308 l~A~r~tg~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~ 387 (603)
..++.-....|.. .|++|+|-+.-..++++.|.+. |+. +..+-+. - .+++......+.+..+
T Consensus 262 ~~~l~~~~~~l~G---krv~i~gd~~~~~~l~~~L~el-----Gm~-------~v~~~t~-~--~~~~~~~~~~~~l~~~ 323 (407)
T TIGR01279 262 WRALEPHTQLLRG---KKIFFFGDNLLELPLARFLKRC-----GME-------VVECGTP-Y--IHRRFHAAELALLEGG 323 (407)
T ss_pred HHHHHHHHHhcCC---CEEEEECCchHHHHHHHHHHHC-----CCE-------EEEecCC-C--CChHHHHHHHhhcCCC
Confidence 3444444455666 9999999999999999888773 552 2212111 0 1111111111111111
Q ss_pred cCCcCCcccCCCHHHHhcccCCcEEEeec
Q 007456 388 PGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (603)
Q Consensus 388 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (603)
.......+...|++.++..|||.+||-|
T Consensus 324 -~~v~~~~d~~~l~~~i~~~~pDllig~~ 351 (407)
T TIGR01279 324 -VRIVEQPDFHRQLQRIRATRPDLVVTGL 351 (407)
T ss_pred -CeEEeCCCHHHHHHHHHhcCCCEEecCc
Confidence 1110001224567889999999999876
No 497
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=32.47 E-value=3.1e+02 Score=28.51 Aligned_cols=130 Identities=21% Similarity=0.255 Sum_probs=65.2
Q ss_pred eEEEEecCccccccCCCCCCcccccchhHHHHHHhcCCCCCceeeEEeeccCCchhcccCcccccccccCCChhhhhHhH
Q 007456 173 DMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIV 252 (603)
Q Consensus 173 ~viVVTDG~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~v 252 (603)
++.+|||.+.=| |..-+.= =||. .+|+-+-+|. ++..++. +--.
T Consensus 1 Ki~IitDS~~dl------------~~~~~~~----~~i~---vvPl~i~~~~--~~y~D~~---------------~i~~ 44 (280)
T PF02645_consen 1 KIAIITDSTSDL------------PPELAEE----YGIY---VVPLNIIIDG--KEYRDGV---------------DISP 44 (280)
T ss_dssp -EEEEEEGGG---------------HHHHHH----TTEE---EE--EEEETT--EEEETTT---------------TSCH
T ss_pred CEEEEECCCCCC------------CHHHHHh----CCeE---EEeEEEecCC--eEEecCC---------------CCCH
Confidence 478899988755 2111111 1677 9999998863 4444431 1235
Q ss_pred HHHHHHHHHh--CCCeEEEeecCCCchHHHHHHHHhh-------cC--CccccCCchhHHHHHHHHHHHHHHhCCCCCCC
Q 007456 253 DEFMEAVHAR--WPKAIVQFEDFQMKWAFETLERYRK-------RF--CMFNDDIQGTAGVALAGLLGTVRAQGLSLTDF 321 (603)
Q Consensus 253 defv~av~~~--~P~~~Iq~EDf~~~naf~iL~ryr~-------~~--~~FnDDiQGTaaV~lAgll~A~r~tg~~l~dl 321 (603)
+||.+.+++. .|+. |.|+.-.+.+.|++ ++ .++..-.=|| +++.+...+.+.+
T Consensus 45 ~efy~~l~~~~~~p~T-------S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgt--------y~~a~~aa~~~~~- 108 (280)
T PF02645_consen 45 EEFYEKLRESGEIPKT-------SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGT--------YNSARLAAKMLPD- 108 (280)
T ss_dssp HHHHHHHHHTTSEEEE-------E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-TH--------HHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCcee-------cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhH--------HHHHHHHHhhcCc-
Confidence 6777777433 3643 33455555555554 12 3333333333 2222222222256
Q ss_pred CCceEEEeCcchhHHHHHHHHHHH--HHHhcCCChhhh
Q 007456 322 ADQKIVVVGAGSAGLGVLKMAVQA--AARMAGNNDAFA 357 (603)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~--~~~~~Gls~~eA 357 (603)
.+|-++=..+++.|.+-++..+ |. ++|.|.+|.
T Consensus 109 --~~i~ViDS~~~s~g~g~lv~~a~~l~-~~G~s~~ei 143 (280)
T PF02645_consen 109 --IKIHVIDSKSVSAGQGLLVLEAAKLI-EQGKSFEEI 143 (280)
T ss_dssp --TEEEEEE-SS-HHHHHHHHHHHHHHH-HTT--HHHH
T ss_pred --CEEEEEeCCCcchhhhHHHHHHHHHH-HcCCCHHHH
Confidence 8899999998888888888765 44 689998873
No 498
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=32.43 E-value=42 Score=36.55 Aligned_cols=33 Identities=45% Similarity=0.613 Sum_probs=25.1
Q ss_pred EEEeCcchhHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEecCCcc
Q 007456 326 IVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLI 370 (603)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~G-ls~~eA~~~i~lvD~~GLv 370 (603)
|||+|+|.||+..|-.+.+ .| . ++.++++....
T Consensus 2 VvVVG~G~AGl~AA~~aa~-----~G~~-------~V~vlEk~~~~ 35 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKK-----AGAA-------NVVLLEKMPVI 35 (439)
T ss_pred EEEECCCHHHHHHHHHHHH-----cCCc-------cEEEEecCCCC
Confidence 8999999999988865543 35 3 58888887654
No 499
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.28 E-value=40 Score=38.67 Aligned_cols=73 Identities=29% Similarity=0.443 Sum_probs=44.5
Q ss_pred CceEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCcccCCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007456 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (603)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GLv~~~r~~l~~~k~~fa~~~~~~~~~~~~~~L~e 402 (603)
+-||+++|||..|+-.-+.|+. .|+ +.|.++|.+ |-+-.+|+. |--|-|++- +.+....-.+
T Consensus 12 ~~riLvVGaGGIGCELLKnLal-----~gf------~~IhiIDlD---TIDlSNLNR-QFLFrkkhV---gqsKA~vA~~ 73 (603)
T KOG2013|consen 12 SGRILVVGAGGIGCELLKNLAL-----TGF------EEIHIIDLD---TIDLSNLNR-QFLFRKKHV---GQSKATVAAK 73 (603)
T ss_pred cCeEEEEecCcccHHHHHHHHH-----hcC------CeeEEEecc---ceeccchhh-hheeehhhc---CchHHHHHHH
Confidence 3999999999888655554433 576 479999998 333234442 223333321 1112345678
Q ss_pred HhcccCCcEEE
Q 007456 403 VVRKVKPHVLL 413 (603)
Q Consensus 403 ~V~~vkptvLI 413 (603)
+|++..|.+=|
T Consensus 74 ~v~~Fnpn~~l 84 (603)
T KOG2013|consen 74 AVKQFNPNIKL 84 (603)
T ss_pred HHHHhCCCCce
Confidence 88888888754
No 500
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=32.00 E-value=36 Score=38.28 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=26.1
Q ss_pred eEEEeCcchhHHHHHHHHHHHHHHhcCCChhhhcCeEEEEecCCc
Q 007456 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (603)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (603)
+|+|+|||-||+.+|..+.. .|. ++.+++.+.-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr-----~G~-------~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ-----AGV-------PVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecccc
Confidence 68999999999999987765 354 5888886543
Done!