Query 007460
Match_columns 603
No_of_seqs 192 out of 343
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 02:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a3l_A AMP deaminase, AMPD; at 100.0 2E-108 6E-113 915.5 26.5 443 144-597 1-454 (701)
2 2pgf_A Adenosine deaminase; me 94.4 0.11 3.9E-06 53.7 9.0 126 391-557 44-183 (371)
3 3iar_A Adenosine deaminase; pu 79.3 6.2 0.00021 41.2 9.1 129 389-557 4-155 (367)
4 3rys_A Adenosine deaminase 1; 75.5 5.3 0.00018 41.3 7.2 124 390-557 12-146 (343)
5 4gxw_A Adenosine deaminase; am 74.3 7.4 0.00025 40.8 8.0 62 493-557 90-162 (380)
6 3pao_A Adenosine deaminase; st 73.2 4 0.00014 41.8 5.6 123 391-557 10-143 (326)
7 3cuq_C Vacuolar protein-sortin 42.0 36 0.0012 32.6 5.7 43 499-543 72-121 (176)
8 3k2z_A LEXA repressor; winged 37.7 16 0.00056 33.9 2.6 33 405-446 6-38 (196)
9 2jt1_A PEFI protein; solution 32.3 30 0.001 28.6 3.0 33 406-446 6-38 (77)
10 1xb4_A VPS25, hypothetical 23. 26.0 1E+02 0.0034 30.1 5.9 43 499-543 88-145 (202)
No 1
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Probab=100.00 E-value=1.8e-108 Score=915.47 Aligned_cols=443 Identities=79% Similarity=1.212 Sum_probs=345.9
Q ss_pred CCCCCcccc--ccccccCCccccccccCCCCcccccccCCCCCCCCCcccccchhH--hhhccccccccccCCCCCCCCC
Q 007460 144 TSPKSPVAS--AFESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPD 219 (603)
Q Consensus 144 ~~p~s~~~~--~~~~~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~rs~s~~~~~~~~~~~ 219 (603)
|||||||++ ||+|+|+||||+++....+.|+.|+++||..+. .+++|+++ .....|+||+|+++++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~ 76 (701)
T 2a3l_A 1 MSPKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDNEM----PADANEEQISMAASSMIRSHSVSGDLHGVQPD 76 (701)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CCCCCCCccccccccccccccccccccccCCccccccccccccc----chhhccchhhHHHHhhhhccccccccccCCCC
Confidence 799999995 999999999999998888999999999999873 46777766 6667899999999999999999
Q ss_pred ccchhhhhcCcccCCcceeeeCCCCCCChhHHHHHHHHHHHHHhhhccCCCCCCCcccccccCCCCCCCCCCCCCccCCC
Q 007460 220 PIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPV 299 (603)
Q Consensus 220 ~~~~~~~~~~~~~~~f~Rv~I~~~~~p~~d~~~a~~~l~~aL~LR~kY~~~~~~~~~~~~~~~~~~~p~p~~~p~~~~~~ 299 (603)
|++++|++++|++++||||.|++ ++|..|+++|++.|.+||.||+|||+.....+|+..+..++.+|.+.++||.+.++
T Consensus 77 ~~~~~il~~~~~~~~f~rv~i~~-~~~~~e~~~~~~~i~~al~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (701)
T 2a3l_A 77 PIAADILRKEPEQETFVRLNVPL-EVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQ 155 (701)
T ss_dssp TTTCCCCCCCCCSCCCCCCCCCC-CCCCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------------CCCCCCCC
T ss_pred ccccccccCCcccccceeEEcCC-CCCCHHHHHHHHHHHHHHhhHHHhcccccCCchhccccccCCCCCCCCCcccCCCC
Confidence 99999999999999999999955 56778999999999999999999999888888987777777788899999999888
Q ss_pred CCCCceEEeeCcEEEEecCCCCCcccCCCCChHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhccchhhhh
Q 007460 300 GKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLA 379 (603)
Q Consensus 300 ~~~~~~f~~~dGV~~v~~~~~~~~~~~pip~~~eF~~D~~~l~~~i~~gp~ksfc~rRL~~Le~KF~Lh~lLN~~~E~~e 379 (603)
+++++.|+|+||||+||.+++..+..+|+|||++|+.|++.|+++|++||+||||++||+|||+||+||++||+.+|..+
T Consensus 156 ~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~Rl~~l~~kf~l~~~ln~~~E~~~ 235 (701)
T 2a3l_A 156 GKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLA 235 (701)
T ss_dssp CCCCCCCCCBTTBCCCCCSSCCSSCSCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceEEeeccEEEEecCCCcccccCCCCCHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 88999999999999999877777889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccceeeccccccccccCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccccccC
Q 007460 380 QKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHAD 459 (603)
Q Consensus 380 ~K~vphRDFYNvrKVDthVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~~dLtVD~Ldvhad 459 (603)
+|++|||||||++|||+|+|+||||+|++||+|||+|++.+|+++|+.++|+.+||+|+|+.++++.|+||||+|+||++
T Consensus 236 ~k~~~~~dFy~~~KVDlHvHLsg~m~~~~LLefik~k~~~~pd~vv~~~~Gk~~TL~evF~~~~l~~ydltvd~L~~~ad 315 (701)
T 2a3l_A 236 QKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHAD 315 (701)
T ss_dssp GGGSCSCCTTTSCEEEEEEETTTCSCHHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCCCSC
T ss_pred hccCCCCccccCCccceeecccCCCCHHHHHHHHHhhccCCCCceEecCCCCcccHHHHHHHcCCccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCCchhHHHHhhcccCCCCchhHHHHHHHHHHHHhhhcccceeEEEEEEecCChhHHHHHHHHHHH
Q 007460 460 KSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVN 539 (603)
Q Consensus 460 ~~tFhRFD~Fn~KyNP~G~s~LReiFLktDN~i~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSIYGrs~~EW~kLA~Wv~~ 539 (603)
+++|||||+||+||||+|+++||+|||||||+|.|+|||+|+++|++++++++||++|+|+++||++..+|+++++|+++
T Consensus 316 ~~~F~rFd~Fn~kynp~g~~~LreiFlktdn~i~~e~l~ri~~evled~a~dgV~Y~ElR~sp~~~~~~~~~~l~~~v~~ 395 (701)
T 2a3l_A 316 KSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVN 395 (701)
T ss_dssp SSCCCCCSSSHHHHCCSSCCHHHHHHSCSSSTTTTTTHHHHHHHHHHHHTTSSSEEEEEEEECCSSSSTHHHHHHHHHHT
T ss_pred cchhhhhcccccccChhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCeEEEEEeccccCCCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeccchhhccccccccccccccHHHHhhhccccccc-------cCchhhHHHH
Q 007460 540 NELYSENVVWLIQVWISMFLKSHHRCYEMLVMQNFSFWIKCNVCFPLL-------SHLYMHVCAH 597 (603)
Q Consensus 540 ~~L~S~nnRWlIQIPRly~~~~~~~~~~~g~~~nF~~~l~~NIF~PLf-------~~~~~~~~~~ 597 (603)
+++.+.++||+|||||.|.. ....+.+.+|+++|+ |||.||| +||.++.+-+
T Consensus 396 ~~~~~~~vr~ii~i~R~~~~-----~~a~~~v~~F~~~l~-nIF~PL~e~t~~p~~~~~l~~~~~ 454 (701)
T 2a3l_A 396 NDLYSENVVWLIQLPRLYNI-----YKDMGIVTSFQNILD-NIFIPLFEATVDPDSHPQLHVFLK 454 (701)
T ss_dssp TTCCCSSEEEEEEEECCHHH-----HTTSSSCSSTHHHHH-HHSSHHHHHHHCGGGSTTTHHHHT
T ss_pred cCccCcceEEEEEeecccCH-----HHhcChHHHHHHHHH-hhhhHHHHhhcCcccCHHHHhcCC
Confidence 99999999999999999965 336788999999995 9999999 5778877654
No 2
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=94.40 E-value=0.11 Score=53.70 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=75.0
Q ss_pred ceeeccccccccccCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccccccCCCccccccccc
Q 007460 391 VRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFN 470 (603)
Q Consensus 391 vrKVDthVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~Fn 470 (603)
.-|||.|+|+.||++.+.|+++.+++-.. |. .|..++.+.+.. ...+..++.|-
T Consensus 44 lPK~eLH~Hl~gsl~~~~l~~la~~~~~~-p~----------~~~~~l~~~~~~---------------~~~~~~L~~~l 97 (371)
T 2pgf_A 44 IPKCELHCHLDLCFSADFFVSCIRKYNLQ-PN----------LSDEEVLDYYLF---------------AKGGKSLGEFV 97 (371)
T ss_dssp SCEEEEEEEGGGCCCHHHHHHHHHHTTCC-TT----------SCHHHHHHHHCC---------------TTCCSCHHHHH
T ss_pred CcHhhheeCCccCCCHHHHHHHHHHcCCC-CC----------CCHHHHHHHHhc---------------ccCCCCHHHHH
Confidence 57999999999999999999987755322 32 123333221110 01111222222
Q ss_pred cCCCCCchhHHHHhhcccCC-CCchhHHHHHHHHHHHHhhhcccceeEEEEEEec------CChhHHH-----HHHHHHH
Q 007460 471 LKYNPCGQSRLREIFLKQDN-LIQGRFLAELTKQVFSDLEASKYQMAEYRISIYG------RKQSEWD-----QLASWIV 538 (603)
Q Consensus 471 ~KyNP~G~s~LReiFLktDN-~i~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSIYG------rs~~EW~-----kLA~Wv~ 538 (603)
++|...-. ....+.|.+++++++.++-.+..+++|+|++.+. -+..+.- -+++-..
T Consensus 98 ------------~~~~~~~~~~~t~ed~~~~a~~~l~e~~~~GV~y~E~r~dp~~~~~~~gl~~~~~~~a~~~~~~~a~~ 165 (371)
T 2pgf_A 98 ------------EKAIKVADIFHDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQAIVKGIKEVVE 165 (371)
T ss_dssp ------------HHHHHHGGGCCSHHHHHHHHHHHHHHHHHHTEEEEEEEECHHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCEEEEEEECcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 22211111 2367889999999999999999999999987542 3332221 1222122
Q ss_pred HC--CCCCCCceEEEEeccch
Q 007460 539 NN--ELYSENVVWLIQVWISM 557 (603)
Q Consensus 539 ~~--~L~S~nnRWlIQIPRly 557 (603)
++ |+ ..+|+++++|-+
T Consensus 166 ~~~~gi---~~~li~~~~r~~ 183 (371)
T 2pgf_A 166 LLDHKI---HVALMCIGDTGH 183 (371)
T ss_dssp HTTTSS---EEEEEEEEEESS
T ss_pred HccCCC---EEEEEEEecCCC
Confidence 33 32 579999999953
No 3
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=79.29 E-value=6.2 Score=41.20 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=74.7
Q ss_pred ccceeeccccccccccCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccccccCCCccccc-c
Q 007460 389 YNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRF-D 467 (603)
Q Consensus 389 YNvrKVDthVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~~dLtVD~Ldvhad~~tFhRF-D 467 (603)
.+.-||+-|+|+.||+....|++.-+++=-.=|. .|..++-+.+... +...+..| +
T Consensus 4 ~~lPK~ELH~HL~Gsl~p~tl~~La~~~~~~lp~----------~~~~~l~~~~~~~-------------~~~~L~~fl~ 60 (367)
T 3iar_A 4 FDKPKVELHVHLDGSIKPETILYYGRRRGIALPA----------NTAEGLLNVIGMD-------------KPLTLPDFLA 60 (367)
T ss_dssp CCSCEEECCBBGGGSCCHHHHHHHHHHHTCCCSC----------SSHHHHHHHHCCS-------------SCCCHHHHHG
T ss_pred CCCCeeEeeecccCCCCHHHHHHHHHhcCCCCCc----------CCHHHHHHHhccC-------------CCCCHHHHHH
Confidence 3677999999999999999999888765221111 1223332221110 00011111 2
Q ss_pred ccccCCCCCchhHHHHhhcccCCCCchhHHHHHHHHHHHHhhhcccceeEEEEEE-----------------ecCChhHH
Q 007460 468 KFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEASKYQMAEYRISI-----------------YGRKQSEW 530 (603)
Q Consensus 468 ~Fn~KyNP~G~s~LReiFLktDN~i~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSI-----------------YGrs~~EW 530 (603)
.|. - +.+.|+ . .-+=|.+++.++++++......++|+|.+- +|-+.++-
T Consensus 61 ~f~----~-~~~vl~----~-----~~edl~~~a~e~~ed~a~dgV~Y~Eir~~P~~~~~~~~~~~~~~~~~~gl~~~~v 126 (367)
T 3iar_A 61 KFD----Y-YMPAIA----G-----CREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEV 126 (367)
T ss_dssp GGG----G-THHHHT----T-----CHHHHHHHHHHHHHHHHTTTEEEEEEEECGGGGCSSSCSSCGGGCCCCSCCHHHH
T ss_pred HHH----H-HHHHHc----C-----CHHHHHHHHHHHHHHHHHcCCEEEEEEecHHHhhhccccccccccccCCCCHHHH
Confidence 221 0 111111 0 236688999999999999999999999962 25555443
Q ss_pred HH-HHHHHH----HCCCCCCCceEEEEeccch
Q 007460 531 DQ-LASWIV----NNELYSENVVWLIQVWISM 557 (603)
Q Consensus 531 ~k-LA~Wv~----~~~L~S~nnRWlIQIPRly 557 (603)
-+ +.+=+. +.| -.+||++++.|-.
T Consensus 127 v~~v~~~~~~a~~~~g---i~~~lI~~~~R~~ 155 (367)
T 3iar_A 127 VALVGQGLQEGERDFG---VKARSILCCMRHQ 155 (367)
T ss_dssp HHHHHHHHHHHHHHHC---CEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHhcC---CeEEEEEEeCCCC
Confidence 32 322222 233 3689999999954
No 4
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=75.47 E-value=5.3 Score=41.26 Aligned_cols=124 Identities=11% Similarity=0.168 Sum_probs=74.3
Q ss_pred cceeeccccccccccCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccccccCCCcccccccc
Q 007460 390 NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKF 469 (603)
Q Consensus 390 NvrKVDthVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~F 469 (603)
+.-||+-|+|+.||+....|++.-+++=-.=| .-|..++-+.+ .|.
T Consensus 12 ~lPK~ELH~Hl~Gsl~p~tl~~la~~~~~~lp----------~~~~~~l~~~~-------------------~~~----- 57 (343)
T 3rys_A 12 APPVAELHLHIEGTLQPELIFALAERNGIELP----------YEDIEELREKY-------------------EFT----- 57 (343)
T ss_dssp CCCEEECSBBGGGGCCHHHHHHHHHHTTCCCS----------CSSHHHHHTTC-------------------CCS-----
T ss_pred cCCceeeEecCccCCCHHHHHHHHHhcCCCCC----------CCCHHHHHHhc-------------------CCC-----
Confidence 46799999999999999888887776310000 01233321111 000
Q ss_pred ccCCCCCchhHHHHhhcccCCCC-chhHHHHHHHHHHHHhhhcccceeEEEEEE-----ecCChhH-HHHHHHH----HH
Q 007460 470 NLKYNPCGQSRLREIFLKQDNLI-QGRFLAELTKQVFSDLEASKYQMAEYRISI-----YGRKQSE-WDQLASW----IV 538 (603)
Q Consensus 470 n~KyNP~G~s~LReiFLktDN~i-~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSI-----YGrs~~E-W~kLA~W----v~ 538 (603)
.-.+..++|--+-..+ .-+=|.+++++++.++.+....++|+|.+- +|-+.++ .+-+.+= -.
T Consensus 58 -------~l~~fl~~f~~~~~vl~~~e~~~~~~~~~l~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~ 130 (343)
T 3rys_A 58 -------DLQSFLDLYYANMAVLQTEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGVANALATSEE 130 (343)
T ss_dssp -------SHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHTTTCCHHHHHHHHHHHHTTHHH
T ss_pred -------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCEEEEEEecHHHhccCCCCHHHHHHHHHHHHHHHhh
Confidence 0113333443333332 457788999999999999999999999953 4445443 2212111 12
Q ss_pred HCCCCCCCceEEEEeccch
Q 007460 539 NNELYSENVVWLIQVWISM 557 (603)
Q Consensus 539 ~~~L~S~nnRWlIQIPRly 557 (603)
++| -.+||++++.|-.
T Consensus 131 ~~g---i~~~lI~~~~R~~ 146 (343)
T 3rys_A 131 DFG---VSTLLIAAFLRDM 146 (343)
T ss_dssp HHS---CEEEEEEEEETTS
T ss_pred cCc---eeEEEEEEeCCCC
Confidence 333 3689999999975
No 5
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=74.28 E-value=7.4 Score=40.81 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHHHHhhhcccceeEEEEEE------ecCChhHH-----HHHHHHHHHCCCCCCCceEEEEeccch
Q 007460 493 QGRFLAELTKQVFSDLEASKYQMAEYRISI------YGRKQSEW-----DQLASWIVNNELYSENVVWLIQVWISM 557 (603)
Q Consensus 493 ~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSI------YGrs~~EW-----~kLA~Wv~~~~L~S~nnRWlIQIPRly 557 (603)
.-+=|.+++.++++++......++|+|++- -|.+.++. +-+...-.+.| -.+||++++.|-.
T Consensus 90 t~ed~~r~a~e~~ed~a~dgV~Y~Eirf~P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~g---i~~rlI~~~~R~~ 162 (380)
T 4gxw_A 90 RPDDLRRIAYEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAAIVTGMRDAARDFG---IGARLIPSIDREQ 162 (380)
T ss_dssp SHHHHHHHHHHHHHHHHTTTEEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC---CEEEEEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEEcCHHHhccccCCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEeecCCC
Confidence 345688999999999999999999999953 24444443 22333334455 3689999999964
No 6
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=73.24 E-value=4 Score=41.79 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=73.1
Q ss_pred ceeeccccccccccCHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCCCcccccccccccCCCccccccccc
Q 007460 391 VRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFN 470 (603)
Q Consensus 391 vrKVDthVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~Fn 470 (603)
.-||+-|+|+.||+....|++.-+++=-.=| .-|..++-+... |.-+
T Consensus 10 lPK~ELH~Hl~Gsl~~~t~~~la~~~~~~lp----------~~~~~~l~~~~~-------------------~~~l---- 56 (326)
T 3pao_A 10 LPKAELHLHLEGTLEPELLFALAERNRIALP----------WNDVETLRKAYA-------------------FNNL---- 56 (326)
T ss_dssp SCEEECSBBGGGGCCHHHHHHHHHHTTCCCS----------SSSHHHHHHTCC-------------------CSSH----
T ss_pred CCceEEEecccCCCCHHHHHHHHHhcCCCCC----------CCCHHHHHhhcC-------------------CCCH----
Confidence 5699999999999999888877765311101 012333211100 0000
Q ss_pred cCCCCCchhHHHHhhccc-CCCCchhHHHHHHHHHHHHhhhcccceeEEEEEE-----ecCChhHHHH-HHH----HHHH
Q 007460 471 LKYNPCGQSRLREIFLKQ-DNLIQGRFLAELTKQVFSDLEASKYQMAEYRISI-----YGRKQSEWDQ-LAS----WIVN 539 (603)
Q Consensus 471 ~KyNP~G~s~LReiFLkt-DN~i~GrYlAEL~K~Vi~~LE~sKYQ~aE~RlSI-----YGrs~~EW~k-LA~----Wv~~ 539 (603)
.+..++|--+ .=...-+=|.+++++++.++-+....++|+|.+- +|-+.+++-+ +.. --.+
T Consensus 57 --------~~fl~~~~~~~~vl~t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~~ 128 (326)
T 3pao_A 57 --------QEFLDLYYAGADVLRTEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIPFEVVLAGIRAALRDGEKL 128 (326)
T ss_dssp --------HHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhccCCCCHHHHHHHHHHHHHHHHhh
Confidence 1222222222 2223456688999999999999999999999953 4555555433 222 2223
Q ss_pred CCCCCCCceEEEEeccch
Q 007460 540 NELYSENVVWLIQVWISM 557 (603)
Q Consensus 540 ~~L~S~nnRWlIQIPRly 557 (603)
+| -.+||++++.|..
T Consensus 129 ~g---i~~~lI~~~~R~~ 143 (326)
T 3pao_A 129 LG---IRHGLILSFLRHL 143 (326)
T ss_dssp HC---CEECCEEEEETTS
T ss_pred Cc---eEEEEEEEeCCCC
Confidence 44 3579999999975
No 7
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=42.00 E-value=36 Score=32.57 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhcccceeEE------EEEEecCChhHHHH-HHHHHHHCCCC
Q 007460 499 ELTKQVFSDLEASKYQMAEY------RISIYGRKQSEWDQ-LASWIVNNELY 543 (603)
Q Consensus 499 EL~K~Vi~~LE~sKYQ~aE~------RlSIYGrs~~EW~k-LA~Wv~~~~L~ 543 (603)
|.++.|++.|...+ .+|| +..||=++++||.+ |.+|+.++|+.
T Consensus 72 e~~~~il~~L~~~g--~aew~d~~~~~~~I~Wrt~~eWa~~iy~wv~~~G~~ 121 (176)
T 3cuq_C 72 ESIQIVLEELRKKG--NLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQN 121 (176)
T ss_dssp HHHHHHHHHHHHHT--SEEECSSSSSEEEECSSCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhcC--CceeecCCCCEEEEEeCCHHHHHHHHHHHHHhcCCc
Confidence 55667777777664 4666 58999999999965 68999999865
No 8
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=37.72 E-value=16 Score=33.91 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCC
Q 007460 405 NQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTG 446 (603)
Q Consensus 405 nqKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~ 446 (603)
.|+++|+||++.++.+ |.+.|.+|+.+.+|++.
T Consensus 6 ~q~~il~~I~~~~~~~---------g~~~s~~eia~~lgl~~ 38 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKN---------GYPPSVREIARRFRITP 38 (196)
T ss_dssp HHHHHHHHHHHHHHHH---------SSCCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHh---------CCCCCHHHHHHHcCCCc
Confidence 4889999999988754 56689999999999863
No 9
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=32.29 E-value=30 Score=28.64 Aligned_cols=33 Identities=9% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhccCCCceEEccCCccccHHHHHHhCCCCC
Q 007460 406 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTG 446 (603)
Q Consensus 406 qKhLL~FIk~Kl~~epd~vV~~~dGk~~TLkevFe~l~lt~ 446 (603)
++++|+||++.++.. .|.++|.+||.+.+|++.
T Consensus 6 ~~~IL~~I~~~i~~~--------~g~~psv~EIa~~lgvS~ 38 (77)
T 2jt1_A 6 VTKIISIVQERQNMD--------DGAPVKTRDIADAAGLSI 38 (77)
T ss_dssp HHHHHHHHHHHHHHH--------TTSCEEHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhhc--------cCCCcCHHHHHHHHCCCH
Confidence 578999999998753 356679999999999963
No 10
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=26.00 E-value=1e+02 Score=30.11 Aligned_cols=43 Identities=12% Similarity=0.301 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcccceeEE--------------EEEEecCChhHHHH-HHHHHHHCCCC
Q 007460 499 ELTKQVFSDLEASKYQMAEY--------------RISIYGRKQSEWDQ-LASWIVNNELY 543 (603)
Q Consensus 499 EL~K~Vi~~LE~sKYQ~aE~--------------RlSIYGrs~~EW~k-LA~Wv~~~~L~ 543 (603)
|.+++|++.|...+ .||| ++-||=++++||.. |-.|+.++|.-
T Consensus 88 e~~~~Il~~Lv~~g--~aew~d~~~~~~~~~~k~~~~I~Wrtp~EWa~~I~~Wv~~tG~~ 145 (202)
T 1xb4_A 88 VFIDEIWSQMTKEG--KCLPIDQSGRRSSNTTTTRYFILWKSLDSWASLILQWFEDSGKL 145 (202)
T ss_dssp HHHHHHHHHHHHTT--SEEEESSSSBCC--CCCCEEEECSSCHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHhcC--CeEEeCCCCcccccccCceEEEEeCCHHHHHHHHHHHHHhcCCc
Confidence 44666666666553 2333 47899999999965 78999999954
Done!