BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007461
         (603 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E4B|A Chain A, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|B Chain B, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|C Chain C, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|D Chain D, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
          Length = 452

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYE 388
           PE  L  VL+Y  +G  ++ LD VE +  A L  +D     +   + K++      ++ +
Sbjct: 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLK 200

Query: 389 QL---ISQGCIPGQ 399
           Q+   +S+G +  Q
Sbjct: 201 QMEAGVSRGTVTAQ 214


>pdb|3KZV|A Chain A, The Crystal Structure Of A Cytoplasmic Protein With
           Unknown Function From Saccharomyces Cerevisiae
          Length = 254

 Score = 29.3 bits (64), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 259 THMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA 305
           T M   + +++G S  + E LK FR +KE   L D S+ A++    A
Sbjct: 183 TDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLA 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,348,385
Number of Sequences: 62578
Number of extensions: 622050
Number of successful extensions: 1505
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1503
Number of HSP's gapped (non-prelim): 4
length of query: 603
length of database: 14,973,337
effective HSP length: 104
effective length of query: 499
effective length of database: 8,465,225
effective search space: 4224147275
effective search space used: 4224147275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)