BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007461
(603 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66GP4|PP379_ARATH Pentatricopeptide repeat-containing protein At5g13770,
chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2
SV=1
Length = 609
Score = 613 bits (1582), Expect = e-175, Method: Compositional matrix adjust.
Identities = 300/527 (56%), Positives = 396/527 (75%), Gaps = 6/527 (1%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
P + L L+DP+T++L+ ++Y +AK+ E R T K LI YLV SK WD +V
Sbjct: 69 PGPNDLNRVLSRFLRDPETRKLSSEFYEKAKENSELR----TTKHLISYLVSSKSWDLLV 124
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197
S+ ED + + LPD TCS L+ SC+R RKF+I + LL VF +D +A+ A ++AM G+N
Sbjct: 125 SVCEDLREHKALPDGQTCSNLIRSCIRDRKFRITHCLLSVFRSDKSLAVSASDAAMKGFN 184
Query: 198 KLHMYYSTILVYEKMK-SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD-ST 255
KL MY STI V++++K S G+ GCYC+IMEA+ KIG++ KV LF E KS++L
Sbjct: 185 KLQMYSSTIQVFDRLKQSVGVEPSPGCYCRIMEAHEKIGENHKVVELFQEFKSQRLSFLA 244
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315
S +Y I+C SL KSGRAFEAL+ +MK+KGI E +Y+ LI +FA EV + E+
Sbjct: 245 KESGSIYTIVCSSLAKSGRAFEALEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEK 304
Query: 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375
LFKEA K +L+DPE+CLK+VLMY+ EG +E TL+VV +M+ A+LK++DCI CAIVNGFS
Sbjct: 305 LFKEAGGKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFS 364
Query: 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV 435
K+RG+ AVKVYE + + C GQVTYA INAYCR+ Y+KAE +F EM +KGFDKCVV
Sbjct: 365 KQRGFAEAVKVYEWAMKEECEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVV 424
Query: 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
AYS+++ MYGKT R+ DA+ L+AKMK +GC+PN+WIYNSL+DMHGRA +LR+ EK+WKEM
Sbjct: 425 AYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEM 484
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI 555
+R KV PDKVSYT++ISAYNR++E + CV+ Y EFRMN G IDRA+AGIMVGVFSK S+I
Sbjct: 485 KRAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRI 544
Query: 556 EELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602
+EL++LLQDMK EGT+LD RLY SA+NALRDAGL Q +WLQ++F+
Sbjct: 545 DELMRLLQDMKVEGTRLDARLYSSALNALRDAGLNSQIRWLQESFDA 591
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 130/601 (21%), Positives = 254/601 (42%), Gaps = 58/601 (9%)
Query: 32 FSTC-KAFPFVTVNPSSIINHRFFQVNASTNFPTIELNRDSHHQTAVPDAKKFDSFLHGM 90
FS+C K +PF +++ + + H F +N + TI + D K DS
Sbjct: 3 FSSCLKFYPF-SISQAVTLTHHSFSLNLTPPSSTISFASPHSAALSSTDVKLLDS----- 56
Query: 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKI----- 145
L+ A +N A K P F PE + + ++ L +S +D + + ED K
Sbjct: 57 LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM 116
Query: 146 -------------------------------YNVLPDAHTCSRLVASCVRARKFK---IA 171
+ + PD H +R++ V K I+
Sbjct: 117 GTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176
Query: 172 NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231
+ + V+ +++ FN + + H IL+ E M S G+V D + +M+ Y
Sbjct: 177 HAKMSVWGIKPDVS--TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGY 234
Query: 232 YKIGDSEKVAALFLECKSRKLD-STPFSTHMYKILCDSLGKSGRAFEALKFFRDM-KEKG 289
+ GD + L + + ++ +S ++ K GR +AL F ++M + G
Sbjct: 235 IEEGDLDGA----LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDG 290
Query: 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCL--KLVLMYIEEGLVEK 347
D + +L+ VK A E+ ++G DP+V ++ + G V++
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY--DPDVYTYNSVISGLCKLGEVKE 348
Query: 348 TLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN 407
++V++ M + +++ K A ++ L S+G +P T+ S+I
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408
Query: 408 AYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467
C + A ++F EM+ KG + Y+ ++ G++ +A+ ++ +M+ GC
Sbjct: 409 GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR 468
Query: 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFY 527
+V YN+L+D +A R+ E+++ EME V+ + V+Y T+I ++R + +
Sbjct: 469 SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528
Query: 528 NEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDA 587
++ M G D+ ++ F + I++ ++Q M S G + D Y + ++ L A
Sbjct: 529 DQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588
Query: 588 G 588
G
Sbjct: 589 G 589
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/496 (21%), Positives = 208/496 (41%), Gaps = 42/496 (8%)
Query: 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS---------CV 163
+P+ ST +LI+ L ++ + + + ED Y ++PD T + ++ +
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGAL 244
Query: 164 RARKFKI----------ANTLLQVFITDGEI--AL----------------LAFNSAMGG 195
R R+ + N ++ F +G + AL FN+ + G
Sbjct: 245 RIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304
Query: 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDST 255
K I + + M G D Y ++ K+G+ ++ + + +R D +
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR--DCS 362
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315
P +T Y L +L K + EA + R + KGIL D + SLI ++A E
Sbjct: 363 P-NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421
Query: 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375
LF+E KG D L+ +G +++ L++++ M+ + S +++GF
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481
Query: 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV 435
K A ++++++ G VTY ++I+ C+ A ++ +M +G
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541
Query: 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
Y+S++ + + G I+ A +V M + GCEP++ Y +L+ +A + KL + +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMV--GVFSKLS 553
+ + + +Y VI R R+ + + E A++ +V G+ +
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGG 661
Query: 554 QIEELVKLLQDMKSEG 569
I E V L ++ +G
Sbjct: 662 PIREAVDFLVELLEKG 677
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/398 (20%), Positives = 180/398 (45%), Gaps = 9/398 (2%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL---FLECKSRKLDSTPFSTHMYKI 264
+ E MKS+ + + + ++E+Y + +++ ++ ++ K D T F M +
Sbjct: 105 ILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPD-THFYNRMLNL 163
Query: 265 LCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG 324
L D G S + E M GI D S + LI + +++ A + ++ G
Sbjct: 164 LVD--GNSLKLVEISH--AKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYG 219
Query: 325 MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAV 384
++ D + ++ YIEEG ++ L + E M S+ IV+GF K A+
Sbjct: 220 LVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDAL 279
Query: 385 KVYEQLISQ-GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 443
+++ +Q G P Q T+ +++N C+ A ++ M Q+G+D V Y+S+++
Sbjct: 280 NFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISG 339
Query: 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD 503
K G +++A+ ++ +M + C PN YN+L+ + + + +L + + + + PD
Sbjct: 340 LCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 399
Query: 504 KVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQ 563
++ ++I R + ++ + E R G D +++ +++E + +L+
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 459
Query: 564 DMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601
M+ G Y++ ++ A +A+ + E
Sbjct: 460 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 196/430 (45%), Gaps = 39/430 (9%)
Query: 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVF 178
+L +++ L + + + L ++F + + P+A+T + ++ + V+ R F +L+V
Sbjct: 226 SLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKV- 284
Query: 179 ITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE 238
MK G+V + Y +ME K G
Sbjct: 285 ---------------------------------MKKDGVVYNKVTYTLLMELSVKNGKMS 311
Query: 239 KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYA 298
LF E + R ++S H+Y L + G A F ++ EKG+ Y
Sbjct: 312 DAEKLFDEMRERGIES---DVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYG 368
Query: 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358
+LI + E+ AE L E + KG+ V L+ Y +G+V++ + + M+
Sbjct: 369 ALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQK 428
Query: 359 KLKISDCISC-AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417
+ +D +C I + F++ + Y A + +++ G V+Y ++I+ YC+ +
Sbjct: 429 GFQ-ADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEE 487
Query: 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477
A+++F+EM KG + Y+ M+ Y K G+I++A L A M+A G +P+ + Y SL+
Sbjct: 488 AKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIH 547
Query: 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI 537
A N+ + +L+ EM + + + V+YT +IS ++A + D Y+E + G I
Sbjct: 548 GECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTI 607
Query: 538 DRAIAGIMVG 547
D + ++G
Sbjct: 608 DNKVYTALIG 617
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 174/369 (47%), Gaps = 3/369 (0%)
Query: 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275
GI ++ Y I+ AY K D V + K K D ++ Y +L + K+G+
Sbjct: 254 GIKPEAYTYNTIINAYVKQRDFSGVEGVL---KVMKKDGVVYNKVTYTLLMELSVKNGKM 310
Query: 276 FEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL 335
+A K F +M+E+GI D +Y SLI +K A LF E EKG+ L
Sbjct: 311 SDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGAL 370
Query: 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC 395
+ + G + ++ M++ + I+ + +++G+ ++ A +Y+ + +G
Sbjct: 371 IDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGF 430
Query: 396 IPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMW 455
T +I + + R+ Y +A++ M + G V+Y++++ +Y K G + +A
Sbjct: 431 QADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKR 490
Query: 456 LVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYN 515
L +M +KG +PN YN ++ + + +++ KL ME + PD +YT++I
Sbjct: 491 LFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGEC 550
Query: 516 RAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDER 575
A D ++ ++E + G + +M+ SK + +E L +MK +G +D +
Sbjct: 551 IADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNK 610
Query: 576 LYHSAMNAL 584
+Y + + ++
Sbjct: 611 VYTALIGSM 619
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/385 (19%), Positives = 169/385 (43%), Gaps = 7/385 (1%)
Query: 201 MYYSTILVYEKMKSAGIVLDS-GCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS-TPFS 258
M+ + V++ M G+ +D C ++ A + L LE R +DS +
Sbjct: 169 MFEEGLRVFDYMVKKGLSIDERSCIVFLVAA-----KKRRRIDLCLEIFRRMVDSGVKIT 223
Query: 259 THMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFK 318
+ I+ + L + G ++ K ++ KGI + Y ++I ++ + E + K
Sbjct: 224 VYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLK 283
Query: 319 EAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRR 378
++ G++ + L+ + ++ G + + + M+ ++ + ++++ ++
Sbjct: 284 VMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKG 343
Query: 379 GYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS 438
A ++++L +G P TY ++I+ C++ AE + EMQ KG + V ++
Sbjct: 344 NMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFN 403
Query: 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498
+++ Y + G + +A + M+ KG + +V+ N++ R K + ++ M
Sbjct: 404 TLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEG 463
Query: 499 KVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEEL 558
V VSYT +I Y + + + + E G + +M+ + K +I+E
Sbjct: 464 GVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEA 523
Query: 559 VKLLQDMKSEGTKLDERLYHSAMNA 583
KL +M++ G D Y S ++
Sbjct: 524 RKLRANMEANGMDPDSYTYTSLIHG 548
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 136/320 (42%)
Query: 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336
E L+ F M +KG+ D + + + L E+F+ + G+ +V
Sbjct: 172 EGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVV 231
Query: 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCI 396
G VEK+ +++ +K I+N + K+R + V + + G +
Sbjct: 232 EGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVV 291
Query: 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWL 456
+VTY ++ + S AEK+F EM+++G + V Y+S+++ + G ++ A L
Sbjct: 292 YNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLL 351
Query: 457 VAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516
++ KG P+ + Y +L+D + + E L EM+ + V +V + T+I Y R
Sbjct: 352 FDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCR 411
Query: 517 AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERL 576
D Y+ G D + F++L + +E + L M G KL
Sbjct: 412 KGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVS 471
Query: 577 YHSAMNALRDAGLQMQAQWL 596
Y + ++ G +A+ L
Sbjct: 472 YTNLIDVYCKEGNVEEAKRL 491
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 108/259 (41%)
Query: 338 MYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIP 397
+Y++ G+ E+ L V + M L I + + KRR ++++ +++ G
Sbjct: 163 VYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKI 222
Query: 398 GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLV 457
+ ++ CR K++K+ E KG Y++++ Y K ++
Sbjct: 223 TVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVL 282
Query: 458 AKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517
MK G N Y LM++ + + EKL+ EM R + D YT++IS R
Sbjct: 283 KVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRK 342
Query: 518 REFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLY 577
++E G G ++ K+ ++ L+ +M+S+G + + ++
Sbjct: 343 GNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVF 402
Query: 578 HSAMNALRDAGLQMQAQWL 596
++ ++ G+ +A +
Sbjct: 403 NTLIDGYCRKGMVDEASMI 421
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 212 MKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK 271
M++ G+ DS Y ++ + ++ LF E + LD + Y ++ L K
Sbjct: 530 MEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVT---YTVMISGLSK 586
Query: 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS 306
+G++ EA + +MK KG D +Y +LI S S
Sbjct: 587 AGKSDEAFGLYDEMKRKGYTIDNKVYTALIGSMHS 621
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/519 (21%), Positives = 221/519 (42%), Gaps = 68/519 (13%)
Query: 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA-------------------NT 173
W+ I SL E K + PDA+T + L+ C R + A N
Sbjct: 260 WNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNA 319
Query: 174 LLQVF----------------ITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216
LL V+ + +G +++ +NS + Y + M + + +M G
Sbjct: 320 LLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKG 379
Query: 217 IVLDSGCYCQIMEAYYKIGDSEKVAALFLE-----CKSRKLDSTPFS---------THMY 262
D Y ++ + + G E ++F E CK F T M
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 263 KI------------------LCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304
KI L G++G E F++MK G + + + +LI ++
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY 499
Query: 305 ASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD 364
+ + A +++ + G+ D ++ G+ E++ V+ M++ + K ++
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559
Query: 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
C++++ ++ + + E++ S P V +++ + L +AE+ F E
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSE 619
Query: 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484
++++GF + +SMV++YG+ + A ++ MK +G P++ YNSLM MH R+ +
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSAD 679
Query: 485 LRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGI 544
+ E++ +E+ + + PD +SY TVI AY R + ++E R +G V D
Sbjct: 680 FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNT 739
Query: 545 MVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA 583
+G ++ S EE + +++ M G + ++ Y+S ++
Sbjct: 740 FIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 180/434 (41%), Gaps = 39/434 (8%)
Query: 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFL 245
LLAF +G + K + + K K +LD+ I+ K G A +F
Sbjct: 138 LLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMF- 196
Query: 246 ECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA 305
+ D + Y L + SGR EA+ F+ M+E G Y ++ F
Sbjct: 197 --NGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFG 254
Query: 306 SI-TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD 364
+ T L ++ + G+ D L+ L ++ V E MK A
Sbjct: 255 KMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDK 314
Query: 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
A+++ + K A+KV +++ G P VTY S+I+AY R + +A ++ +
Sbjct: 315 VTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQ 374
Query: 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484
M +KG V Y+++++ + + G++ AM + +M+ GC+PN+ +N+ + M+G
Sbjct: 375 MAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGK 434
Query: 485 LRQVEKLW-----------------------------------KEMERRKVTPDKVSYTT 509
++ K++ KEM+R P++ ++ T
Sbjct: 435 FTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT 494
Query: 510 VISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG 569
+ISAY+R F+ + Y G D + ++ ++ E+ K+L +M+
Sbjct: 495 LISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR 554
Query: 570 TKLDERLYHSAMNA 583
K +E Y S ++A
Sbjct: 555 CKPNELTYCSLLHA 568
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 146/330 (44%), Gaps = 36/330 (10%)
Query: 264 ILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323
I+ LGK GR A F ++E G D Y SLI +FA+ + A +FK+ EE
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 324 GMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAA 383
G C ++ Y I+N F K W
Sbjct: 238 G-------CKPTLITY----------------------------NVILNVFGKMGTPWNK 262
Query: 384 V-KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442
+ + E++ S G P TY ++I R +L+ +A +VF EM+ GF V Y++++
Sbjct: 263 ITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD 322
Query: 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502
+YGK+ R ++AM ++ +M G P++ YNSL+ + R L + +L +M + P
Sbjct: 323 VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382
Query: 503 DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLL 562
D +YTT++S + RA + + + + E R G + + ++ + E++K+
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Query: 563 QDMKSEGTKLDERLYHSAMNALRDAGLQMQ 592
++ G D +++ + G+ +
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/422 (20%), Positives = 190/422 (45%), Gaps = 10/422 (2%)
Query: 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF-KIAN 172
+P+ T L+ ++ K +S +S+ E+ + P+ T + + KF ++
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 173 TLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232
++ + ++ +N+ + + + M V+++MK AG V + + ++ AY
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
Query: 233 KIGDSEKVAALFLECKSRKLDS--TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI 290
+ G E+ ++ R LD+ TP Y + +L + G ++ K +M++
Sbjct: 501 RCGSFEQAMTVY----RRMLDAGVTP-DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRC 555
Query: 291 LEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLK-LVLMYIEEGLVEKTL 349
+ Y SL+ ++A+ E+ L L +E G++ V LK LVL+ + L+ +
Sbjct: 556 KPNELTYCSLLHAYANGKEIGLMHSLAEEVYS-GVIEPRAVLLKTLVLVCSKCDLLPEAE 614
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
+K ++V+ + +R+ A V + + +G P TY S++ +
Sbjct: 615 RAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMH 674
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
R A + K+E++ E+ KG +++Y++++ Y + R+RDA + ++M+ G P+V
Sbjct: 675 SRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDV 734
Query: 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529
YN+ + + + + + M + P++ +Y +++ Y + D F +
Sbjct: 735 ITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVED 794
Query: 530 FR 531
R
Sbjct: 795 LR 796
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 1/197 (0%)
Query: 403 ASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA 462
A II+ + S A +F +Q+ GF V +Y+S+++ + +GR R+A+ + KM+
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 463 KGCEPNVWIYNSLMDMHGR-AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFD 521
GC+P + YN ++++ G+ ++ L ++M+ + PD +Y T+I+ R
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 522 MCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581
+ + E + G D+ ++ V+ K + +E +K+L +M G Y+S +
Sbjct: 297 EAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 582 NALRDAGLQMQAQWLQQ 598
+A G+ +A L+
Sbjct: 357 SAYARDGMLDEAMELKN 373
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 187/406 (46%), Gaps = 18/406 (4%)
Query: 187 LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246
+ +++ + Y KL S I ++++MK + Y ++ Y+K+G EK LF E
Sbjct: 234 ITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEE 293
Query: 247 CKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS 306
K T ++ Y L LGK+GR EA F++DM G+ D +L+
Sbjct: 294 MKRAGCSPTVYT---YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350
Query: 307 ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMY--IEEGLVEKTLDVVE------SMKNA 358
+ V EEL E GM R C V+ Y + + L E V E MK
Sbjct: 351 VGRV---EELTNVFSEMGMWR----CTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKAD 403
Query: 359 KLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKA 418
+ S+ +++G+ K A+ + E++ +G P Y S+INA + Y A
Sbjct: 404 SVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 463
Query: 419 EKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478
++F E+++ + Y+ M+ +GK G++ +A+ L +MK +G P+V+ YN+LM
Sbjct: 464 NELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSG 523
Query: 479 HGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVID 538
+A + + L ++ME D S+ +++ + R ++ + + +G D
Sbjct: 524 MVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPD 583
Query: 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
++G F+ EE +++++MK +G + D Y S ++A+
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAV 629
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 171/365 (46%), Gaps = 5/365 (1%)
Query: 239 KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG-ILEDPSIY 297
K ++F + K RK T ST+ IL L + G+ + + + +M +G D Y
Sbjct: 180 KALSVFYQAKGRKCKPTS-STYNSVILM--LMQEGQHEKVHEVYTEMCNEGDCFPDTITY 236
Query: 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357
++LI S+ + A LF E ++ M ++ L+ +Y + G VEK LD+ E MK
Sbjct: 237 SALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKR 296
Query: 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417
A + ++ G K A Y+ ++ G P V +++N ++ +
Sbjct: 297 AGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEE 356
Query: 418 AEKVFIEMQQKGFDKCVVAYSSMV-AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476
VF EM VV+Y++++ A++ + + KMKA P+ + Y+ L+
Sbjct: 357 LTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILI 416
Query: 477 DMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536
D + + + + L +EM+ + P +Y ++I+A +A+ ++ + + E + N G
Sbjct: 417 DGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGN 476
Query: 537 IDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWL 596
+ + +M+ F K ++ E V L +MK++G+ D Y++ M+ + AG+ +A L
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSL 536
Query: 597 QQNFE 601
+ E
Sbjct: 537 LRKME 541
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 155/369 (42%), Gaps = 5/369 (1%)
Query: 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANT 173
+P + L+ + K + + L E+ K P +T + L+ +A + A
Sbjct: 265 QPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYG 324
Query: 174 LLQVFITDGEIALLAF-NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232
+ + DG + F N+ M K+ V+ +M Y +++A +
Sbjct: 325 FYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALF 384
Query: 233 KI-GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL 291
+ +V++ F + K+ DS S Y IL D K+ R +AL +M EKG
Sbjct: 385 ESKAHVSEVSSWFDKMKA---DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFP 441
Query: 292 EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351
P+ Y SLI + + A ELFKE +E V ++ + + G + + +D+
Sbjct: 442 PCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDL 501
Query: 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411
MKN A+++G K A + ++ GC ++ I+N + R
Sbjct: 502 FNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFAR 561
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471
+ +A ++F ++ G V Y++++ + G +A ++ +MK KG E +
Sbjct: 562 TGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAIT 621
Query: 472 YNSLMDMHG 480
Y+S++D G
Sbjct: 622 YSSILDAVG 630
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 156/357 (43%), Gaps = 6/357 (1%)
Query: 98 ELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157
E A D + E K+ P T LI+ L ++ + D +D + PD +
Sbjct: 285 EKALDLFEEMKR-AGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNN 343
Query: 158 LVASCVR-ARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILV-YEKMKSA 215
L+ + R ++ N ++ + ++++N+ + + + S + ++KMK+
Sbjct: 344 LMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKAD 403
Query: 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275
+ Y +++ Y K EK L E + P + Y L ++LGK+ R
Sbjct: 404 SVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAA---YCSLINALGKAKRY 460
Query: 276 FEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL 335
A + F+++KE +YA +I F ++ A +LF E + +G D L
Sbjct: 461 EAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520
Query: 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC 395
+ ++ G++ + ++ M+ + I+NGF++ A++++E + G
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGI 580
Query: 396 IPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD 452
P VTY +++ + ++ +A ++ EM+ KGF+ + YSS++ G +D
Sbjct: 581 KPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKD 637
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 127/564 (22%), Positives = 244/564 (43%), Gaps = 70/564 (12%)
Query: 98 ELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157
++A+ +++E + +P++ T +I L ++ + D V + E + +P + +
Sbjct: 255 DMAWKFFHEIEA-NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313
Query: 158 LVASCVRARKFKIANTLLQVFITDGEI-ALLAFNSAMGGYNKLHMYYSTILVYEKMK--- 213
++ A KF A +LL+ G I +++A+N + K+ + V+E+MK
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA 373
Query: 214 -----SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE-----------CKSRKLDST-- 255
+ I++D C ++ +++ DS + A LF CKS+KLD
Sbjct: 374 APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACA 433
Query: 256 PFSTHMYKI----------LCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA 305
F YK+ L D LGK GR +A K + M + + +Y SLI +F
Sbjct: 434 MFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFF 493
Query: 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDC 365
+ + +++K+ + D ++ + + G EK + E +K A+ + D
Sbjct: 494 NHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIK-ARRFVPDA 552
Query: 366 ISCAI-VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
S +I ++G K +++ + QGC+ Y +I+ +C+ +KA ++ E
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 425 MQQKGFDKCVVA-----------------------------------YSSMVAMYGKTGR 449
M+ KGF+ VV YSS++ +GK GR
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672
Query: 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTT 509
I +A ++ ++ KG PN++ +NSL+D +A+ + + ++ M+ K TP++V+Y
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732
Query: 510 VISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG 569
+I+ + R+F+ F+ E + G M+ +K I E L K+ G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 570 TKLDERLYHSAMNALRDAGLQMQA 593
D Y++ + L + M A
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDA 816
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/504 (22%), Positives = 205/504 (40%), Gaps = 93/504 (18%)
Query: 74 QTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKW 133
+ ++P ++ L + K + E A + E KK + P ST +LI L ++ K
Sbjct: 337 KGSIPSVIAYNCILTCLRKMGKVDE-ALKVFEEMKK--DAAPNLSTYNILIDMLCRAGKL 393
Query: 134 DSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVF----ITDGEIALLAF 189
D+ L + + + P+ T + +V +++K A + + T EI +
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSL 453
Query: 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQI---------------------- 227
+G ++ Y VYEKM + +S Y +
Sbjct: 454 IDGLGKVGRVDDAYK---VYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN 510
Query: 228 -------------MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274
M+ +K G+ EK A+F E K+R+ P Y IL L K+G
Sbjct: 511 QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRF--VP-DARSYSILIHGLIKAGF 567
Query: 275 AFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLK 334
A E + F MKE+G + D Y +I F +V A +L +E + KG +P V
Sbjct: 568 ANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGF--EPTV--- 622
Query: 335 LVLMYIEEGL-----VEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389
+ + +GL +++ + E K+ +++++ I ++++GF K A + E+
Sbjct: 623 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 682
Query: 390 LISQG-----------------------------------CIPGQVTYASIINAYCRIAL 414
L+ +G C P QVTY +IN C++
Sbjct: 683 LMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRK 742
Query: 415 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNS 474
++KA + EMQ++G ++Y++M++ K G I +A L + KA G P+ YN+
Sbjct: 743 FNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNA 802
Query: 475 LMDMHGRAKNLRQVEKLWKEMERR 498
+++ L++E RR
Sbjct: 803 MIEGLSNGNRAMDAFSLFEETRRR 826
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/504 (19%), Positives = 216/504 (42%), Gaps = 40/504 (7%)
Query: 86 FLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKI 145
F+ G+L+ + A +Y+ ++ E + L+ + + + +D++ + + +
Sbjct: 67 FVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSV 126
Query: 146 YNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT-DGEIALLAFNSAMGGYNKLHMYYS 204
P +TC +V CV+A K + ++Q+ A A+ + +G ++ ++
Sbjct: 127 AGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDM 186
Query: 205 TILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264
+ ++++M+ G + ++ + K G + +L E KS LD+ +Y +
Sbjct: 187 MLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDA---DIVLYNV 243
Query: 265 LCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG 324
DS GK G+ A KFF +++ G+ D Y S+I + A E+F+ E
Sbjct: 244 CIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE--- 300
Query: 325 MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAV 384
KN ++ + + I+ G+ + A
Sbjct: 301 -------------------------------KNRRVPCTYAYNTMIM-GYGSAGKFDEAY 328
Query: 385 KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 444
+ E+ ++G IP + Y I+ ++ +A KVF EM++ + Y+ ++ M
Sbjct: 329 SLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPN-LSTYNILIDML 387
Query: 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504
+ G++ A L M+ G PNV N ++D +++ L + +++EM+ + TPD+
Sbjct: 388 CRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDE 447
Query: 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564
+++ ++I + D K Y + + + + ++ F + E+ K+ +D
Sbjct: 448 ITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKD 507
Query: 565 MKSEGTKLDERLYHSAMNALRDAG 588
M ++ D +L ++ M+ + AG
Sbjct: 508 MINQNCSPDLQLLNTYMDCMFKAG 531
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/543 (22%), Positives = 235/543 (43%), Gaps = 24/543 (4%)
Query: 59 STNFPT-IELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEK 117
S PT I+ NR +AV K++D L G K + + +D Y + + +K
Sbjct: 64 SRPLPTPIDFNR---LCSAVARTKQYDLVL-GFCKGMELNGIEHDMYTMTIMINCYCRKK 119
Query: 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS-CVRARKFKIANTLLQ 176
KLL + V + W PD T S LV C+ R + + +
Sbjct: 120 ---KLLFAFSVLGRAWK-----------LGYEPDTITFSTLVNGFCLEGRVSEAVALVDR 165
Query: 177 VFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236
+ L+ ++ + G +++ ++M G D Y ++ K G+
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 237 SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSI 296
S LF + + R + + S Y I+ DSL K G +AL F +M+ KGI D
Sbjct: 226 SALALDLFRKMEERNIKA---SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 282
Query: 297 YASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMK 356
Y+SLI + + ++ +E + ++ D L+ ++++EG + + ++ M
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342
Query: 357 NAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416
+ ++++GF K A ++++ ++S+GC P VTY+ +IN+YC+
Sbjct: 343 TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD 402
Query: 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476
++F E+ KG + Y+++V + ++G++ A L +M ++G P+V Y L+
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462
Query: 477 DMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536
D L + +++++M++ ++T Y +I A + D + G
Sbjct: 463 DGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 522
Query: 537 IDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA-LRDAGLQMQAQW 595
D +M+G K + E L + MK +G D+ Y+ + A L +GL +
Sbjct: 523 PDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL 582
Query: 596 LQQ 598
+++
Sbjct: 583 IEE 585
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 99/480 (20%), Positives = 202/480 (42%), Gaps = 18/480 (3%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELA--YDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDS 135
PD F + ++G + + E D E K+ RP+ T+ LI L +
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ----RPDLVTVSTLINGLCLKGRVSE 193
Query: 136 IVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMG 194
+ L + Y PD T ++ ++ +A L + + +++ ++ +
Sbjct: 194 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVID 253
Query: 195 GYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL-- 252
K + + ++ +M+ GI D Y ++ G + A + E R +
Sbjct: 254 SLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP 313
Query: 253 DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKL 312
D FS L D K G+ EA + + +M +GI D Y SLI F +
Sbjct: 314 DVVTFSA-----LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHE 368
Query: 313 AEELFKEAEEKGMLRDPEVCLKLVLM--YIEEGLVEKTLDVVESMKNAKLKISDCISCAI 370
A ++F KG +P++ +L+ Y + V+ + + + + L + +
Sbjct: 369 ANQMFDLMVSKGC--EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 426
Query: 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
V GF + AA +++++++S+G P VTY +++ C +KA ++F +MQ+
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486
Query: 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490
+ Y+ ++ ++ DA L + KG +P+V YN ++ + +L + +
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADM 546
Query: 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550
L+++M+ TPD +Y +I A+ V+ E ++ G D + +++ + S
Sbjct: 547 LFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLS 606
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 146/333 (43%), Gaps = 1/333 (0%)
Query: 252 LDSTPFSTHM-YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310
+ S P T + + LC ++ ++ + L F + M+ GI D +I + ++
Sbjct: 62 IQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKL 121
Query: 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI 370
A + A + G D LV + EG V + + +V+ M K + +
Sbjct: 122 LFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTL 181
Query: 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
+NG + A+ + ++++ G P +VTY ++N C+ + A +F +M+++
Sbjct: 182 INGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNI 241
Query: 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490
VV YS ++ K G DA+ L +M+ KG + +V Y+SL+ K
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 301
Query: 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550
+ +EM R + PD V+++ +I + + + + YNE G D ++ F
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361
Query: 551 KLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA 583
K + + E ++ M S+G + D Y +N+
Sbjct: 362 KENCLHEANQMFDLMVSKGCEPDIVTYSILINS 394
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 10/256 (3%)
Query: 66 ELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIR 125
EL + + PD ++S + G K+ E + K E P+ T +LI
Sbjct: 336 ELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCE--PDIVTYSILIN 393
Query: 126 YLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EI 184
++K+ D + L + ++P+ T + LV ++ K A L Q ++ G
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453
Query: 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALF 244
+++ + + G + ++EKM+ + + L G Y I+ + +LF
Sbjct: 454 SVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 513
Query: 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304
+ + + Y ++ L K G EA FR MKE G D Y LI +
Sbjct: 514 CSLSDKGVKPDVVT---YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
Query: 305 AS----ITEVKLAEEL 316
I+ V+L EE+
Sbjct: 571 LGGSGLISSVELIEEM 586
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442
A+ ++E +I +P + + + +A R Y M+ G + + + M+
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMIN 113
Query: 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD---MHGRAKNLRQVEKLWKEMERRK 499
Y + ++ A ++ + G EP+ +++L++ + GR + EM++R
Sbjct: 114 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR- 172
Query: 500 VTPDKVSYTTVISA 513
PD V+ +T+I+
Sbjct: 173 --PDLVTVSTLING 184
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 163/333 (48%), Gaps = 6/333 (1%)
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
+ +L D+ G+ + EA + + E + YA LI ++ ++ AE + E +
Sbjct: 158 FNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQ 217
Query: 322 EKGMLRDPEVCLKLVLMYIE-----EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK 376
+ + + + YIE +G E+ +DV + MK + K + ++N + K
Sbjct: 218 NH-HVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGK 276
Query: 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVA 436
+ + K+Y ++ S C P TY +++NA+ R L KAE++F ++Q+ G + V
Sbjct: 277 ASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYV 336
Query: 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496
Y++++ Y + G A + + M+ GCEP+ YN ++D +GRA E +++EM+
Sbjct: 337 YNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMK 396
Query: 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIE 556
R + P S+ ++SAY++AR+ C E NG D + M+ ++ +L Q
Sbjct: 397 RLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFT 456
Query: 557 ELVKLLQDMKSEGTKLDERLYHSAMNALRDAGL 589
++ K+L +M++ D Y+ +N AG
Sbjct: 457 KMEKILAEMENGPCTADISTYNILINIYGKAGF 489
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/419 (22%), Positives = 190/419 (45%), Gaps = 42/419 (10%)
Query: 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFL 245
++ FN + Y + Y +Y ++ + V Y +++AY G E+ + +
Sbjct: 155 VICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLV 214
Query: 246 ECKSRKLDSTPFSTHMYKILCDSLGK-SGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304
E ++ + +Y + L K G EA+ F+ MK Y +I +
Sbjct: 215 EMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLY 274
Query: 305 ASITEVKLAEELFKEAEEKGMLRDPEVCL--KLVLMYIEEGLVEKTLDVVESMKNAKLKI 362
++ ++ +L+ E + P +C LV + EGL EK ++ E ++ L+
Sbjct: 275 GKASKSYMSWKLY--CEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEP 332
Query: 363 SDCISCAIVNGFSKRRGY-WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKV 421
+ A++ +S R GY + A +++ + GC P + +Y +++AY R L+S AE V
Sbjct: 333 DVYVYNALMESYS-RAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391
Query: 422 FIEMQQKGF--------------------DKC---------------VVAYSSMVAMYGK 446
F EM++ G KC +SM+ +YG+
Sbjct: 392 FEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGR 451
Query: 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS 506
G+ ++A+M+ C ++ YN L++++G+A L ++E+L+ E++ + PD V+
Sbjct: 452 LGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVT 511
Query: 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565
+T+ I AY+R + + C++ + E +G D A +++ S Q+E++ +L+ M
Sbjct: 512 WTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTM 570
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 109/229 (47%), Gaps = 4/229 (1%)
Query: 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429
+++ + ++ Y A +Y QL+ +P + TYA +I AYC L +AE V +EMQ
Sbjct: 161 LIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHH 220
Query: 430 FDK---CVVAYSSMV-AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485
V Y++ + + + G +A+ + +MK C+P YN +++++G+A
Sbjct: 221 VSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKS 280
Query: 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIM 545
KL+ EM + P+ +YT +++A+ R + + + + + +G D + +
Sbjct: 281 YMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNAL 340
Query: 546 VGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQ 594
+ +S+ ++ M+ G + D Y+ ++A AGL A+
Sbjct: 341 MESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAE 389
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/309 (19%), Positives = 134/309 (43%), Gaps = 3/309 (0%)
Query: 189 FNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248
+N + Y K Y + +Y +M+S + Y ++ A+ + G EK +F + +
Sbjct: 267 YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ 326
Query: 249 SRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASIT 308
L+ ++Y L +S ++G + A + F M+ G D + Y ++ ++
Sbjct: 327 EDGLEP---DVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAG 383
Query: 309 EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISC 368
AE +F+E + G+ + + L+ Y + V K +V+ M ++ +
Sbjct: 384 LHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLN 443
Query: 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428
+++N + + + K+ ++ + C TY +IN Y + + E++F+E+++K
Sbjct: 444 SMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEK 503
Query: 429 GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQV 488
F VV ++S + Y + + + +M GC P+ L+ + + QV
Sbjct: 504 NFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQV 563
Query: 489 EKLWKEMER 497
+ + M +
Sbjct: 564 TSVLRTMHK 572
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 101/481 (20%), Positives = 203/481 (42%), Gaps = 33/481 (6%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P K T +LI L + K+ + SL + V D HT S L+ ++ R A L
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334
Query: 175 LQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233
+ ++ G I ++ + +K + +++ M ++G++ + Y ++E Y +
Sbjct: 335 VHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR 394
Query: 234 IGDSEKVAALFLECKSRKLDSTPFS--------------------------------THM 261
+ + L +E K R + +P++ +
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVI 454
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
Y L + ++ R +A++ ++MKE+GI D Y SLI + + A E
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381
E G+ + + YIE V+ M+ + + + ++N + K+
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
A Y ++ QG + TY ++N + AE++F EM+ KG V +Y ++
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634
Query: 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501
+ K G ++ A + +M +G PNV IYN L+ R+ + + ++L EM + +
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694
Query: 502 PDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561
P+ V+Y T+I Y ++ + + ++E ++ G V D + +V +L+ +E + +
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Query: 562 L 562
Sbjct: 755 F 755
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 122/528 (23%), Positives = 217/528 (41%), Gaps = 41/528 (7%)
Query: 80 AKKFDSFLHGMLKDPQTQELAYDYYNEAKKL------PEFRPEKSTLKLLIRYLVQSKKW 133
K D L G+L D +A Y EA + E P S K+L+ L++ +
Sbjct: 146 GKSDDGVLFGILFDGY---IAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRL 202
Query: 134 DSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193
D + + NV+ D T L+ + RA ++ +L F T+ E N +
Sbjct: 203 DLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVL--FKTEKEFRTATLN--V 258
Query: 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD 253
G KL E M G+V Y +++ KI E +L +E S
Sbjct: 259 DGALKLK---------ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSL--- 306
Query: 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLA 313
H Y +L D L K A A +M GI P +Y IC + ++ A
Sbjct: 307 GVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKA 366
Query: 314 EELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNG 373
+ LF G++ + L+ Y E V + +++ MK + IS +V G
Sbjct: 367 KALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKG 426
Query: 374 FSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC 433
A + +++I+ GC P V Y ++I + + + + A +V EM+++G
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486
Query: 434 VVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWK 493
+ Y+S++ K R+ +A + +M G +PN + Y + + + A +K K
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK 546
Query: 494 EMERRKVTPDKVSYTTVISAY-NRAREFDMCVKFYNEFRMNGGVIDRAIAG-------IM 545
EM V P+KV T +I+ Y + + + C + + ++D+ I G +M
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRS-------MVDQGILGDAKTYTVLM 599
Query: 546 VGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQA 593
G+F K ++++ ++ ++M+ +G D Y +N G +A
Sbjct: 600 NGLF-KNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKA 646
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/442 (18%), Positives = 187/442 (42%), Gaps = 46/442 (10%)
Query: 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANT 173
RP LI+ +Q+ ++ + + ++ K + PD + L+ +A++ A +
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARS 508
Query: 174 LLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232
L + +G + + + + GY + + S ++M+ G++ + ++ Y
Sbjct: 509 FLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYC 568
Query: 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE 292
K G + + + +S Y +L + L K+ + +A + FR+M+ KGI
Sbjct: 569 KKGKVIEACSAY---RSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625
Query: 293 DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLM--YIEEGLVEKTLD 350
D Y LI F+ + ++ A +F E E+G+ P V + +L+ + G +EK +
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL--TPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410
+++ M L + C I++G+ K A ++++++ +G +P Y ++++ C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743
Query: 411 RIALYSKAEKVF--------------------------IEMQQKGFDKCV---------- 434
R+ +A +F E++ + ++ +
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803
Query: 435 --VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLW 492
V Y+ M+ K G + A L +M+ P V Y SL++ + + ++ ++
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 493 KEMERRKVTPDKVSYTTVISAY 514
E + PD + Y+ +I+A+
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAF 885
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/451 (21%), Positives = 188/451 (41%), Gaps = 28/451 (6%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFR-----PEKSTLKLLIRYLVQSKK 132
P+A + +F+ G ++ A ++ + K + E R P K LI + K
Sbjct: 520 PNAFTYGAFISGYIE-------ASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK 572
Query: 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA--LLAFN 190
S +L DA T + L+ + K A + + G IA + ++
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYG 631
Query: 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250
+ G++KL ++++M G+ + Y ++ + + G+ EK L E +
Sbjct: 632 VLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK 691
Query: 251 KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310
L + Y + D KSG EA + F +MK KG++ D +Y +L+ + +V
Sbjct: 692 GLHPNAVT---YCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV 748
Query: 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL----KISDCI 366
+ A +F +KG L+ + G E +V+ + + K +D
Sbjct: 749 ERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807
Query: 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQ 426
+++ K AA +++ Q+ + +P +TY S++N Y ++ ++ VF E
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867
Query: 427 QKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK-----GCEPNVWIYNSLMDMHGR 481
G + + YS ++ + K G A+ LV +M AK GC+ ++ +L+ +
Sbjct: 868 AAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927
Query: 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512
+ EK+ + M R + PD + +I+
Sbjct: 928 VGEMEVAEKVMENMVRLQYIPDSATVIELIN 958
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 152/385 (39%), Gaps = 47/385 (12%)
Query: 69 RDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLV 128
R Q + DAK + ++G+ K+ + + A + + E + P+ + +LI
Sbjct: 581 RSMVDQGILGDAKTYTVLMNGLFKNDKVDD-AEEIFREMRG-KGIAPDVFSYGVLINGFS 638
Query: 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALL 187
+ S+ ++ + P+ + L+ R+ + + A LL G +
Sbjct: 639 KLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 698
Query: 188 AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247
+ + + GY K ++++MK G+V DS Y +++ ++ D E+ +F
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758
Query: 248 KSRKLDST-PFSTHM----------------------------------YKILCDSLGKS 272
K ST PF+ + Y I+ D L K
Sbjct: 759 KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKE 818
Query: 273 GRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVC 332
G A + F M+ ++ Y SL+ + + +F EA G+ D +
Sbjct: 819 GNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMY 878
Query: 333 LKLVLMYIEEGLVEKTLDVVESM--KNA-----KLKISDCISCAIVNGFSKRRGYWAAVK 385
++ +++EG+ K L +V+ M KNA KL IS C A+++GF+K A K
Sbjct: 879 SVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCR--ALLSGFAKVGEMEVAEK 936
Query: 386 VYEQLISQGCIPGQVTYASIINAYC 410
V E ++ IP T +IN C
Sbjct: 937 VMENMVRLQYIPDSATVIELINESC 961
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 202/451 (44%), Gaps = 5/451 (1%)
Query: 150 PDAHTCSRLVASCVRARKFKIANTLL-QVFITDGEIALLAFNSAMGGYNKLHMYYSTILV 208
P+ T S L+ +++ A L+ Q+F+T + + FN+ + G + + +
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Query: 209 YEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS 268
++M + G D Y ++ K GD++ L + + KL+ +Y + D
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP---GVLIYNTIIDG 265
Query: 269 LGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD 328
L K +AL F++M+ KGI + Y+SLI + A L + E+ + D
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325
Query: 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYE 388
L+ +++EG + + + + M + S +++NGF A +++E
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385
Query: 389 QLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 448
++S+ C P VTY ++I +C+ + +VF EM Q+G V Y+ ++ + G
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445
Query: 449 RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYT 508
A + +M + G PN+ YN+L+D + L + +++ ++R K+ P +Y
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 505
Query: 509 TVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568
+I +A + + + + G D M+ F + EE L ++MK +
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565
Query: 569 GTKLDERLYHSAMNA-LRDAGLQMQAQWLQQ 598
GT + Y++ + A LRD + A+ +++
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKE 596
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/440 (22%), Positives = 189/440 (42%), Gaps = 8/440 (1%)
Query: 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS-CVRARKFKIA 171
++P T LI L K ++L + PD T +V C R
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 172 NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231
N L ++ E +L +N+ + G K + ++++M++ GI + Y ++
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Query: 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL 291
G + L + RK++ F+ + L D+ K G+ EA K + +M ++ I
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFT---FSALIDAFVKEGKLVEAEKLYDEMVKRSI- 357
Query: 292 EDPSI--YASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349
DPSI Y+SLI F + A+++F+ K D L+ + + VE+ +
Sbjct: 358 -DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
+V M L + ++ G + A +++++++S G P +TY ++++
Sbjct: 417 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
C+ KA VF +Q+ + + Y+ M+ K G++ D L + KG +P+V
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536
Query: 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529
YN+++ R + + + L+KEM+ P+ Y T+I A R + + + E
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKE 596
Query: 530 FRMNGGVIDRAIAGIMVGVF 549
R G D + G++ +
Sbjct: 597 MRSCGFAGDASTIGLVTNML 616
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 107/244 (43%)
Query: 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 412
E M+N + + ++N F +R A+ V +++ G P VT +S++N YC
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHS 164
Query: 413 ALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIY 472
S+A + +M G+ V +++++ + +AM L+ +M AKGC+P++ Y
Sbjct: 165 KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTY 224
Query: 473 NSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532
+++ + + L +ME+ K+ P + Y T+I + + D + + E
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 533 NGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQ 592
G + ++ + + +LL DM D + + ++A G ++
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 593 AQWL 596
A+ L
Sbjct: 345 AEKL 348
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442
AV ++ +++ P + ++ +++A ++ + + +MQ G YS ++
Sbjct: 65 AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124
Query: 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502
+ + ++ A+ ++ KM G EPN+ +SL++ + +K + + L +M P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184
Query: 503 DKVSYTTVISA---YNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559
+ V++ T+I +N+A E + + G D G++V K +
Sbjct: 185 NTVTFNTLIHGLFLHNKASE---AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 560 KLLQDMKSEGTKLDERLYHSAMNAL 584
LL M+ + +Y++ ++ L
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGL 266
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/470 (21%), Positives = 201/470 (42%), Gaps = 43/470 (9%)
Query: 154 TCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILV--YE 210
T + L+ +C R + A L+ DG + + ++ + + + S +L+ Y+
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYK 258
Query: 211 KMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLG 270
+++ + LD I+ + K GD K L ++ L + T + +L
Sbjct: 259 EIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSA---KTATLVSIISALA 315
Query: 271 KSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE 330
SGR EA F ++++ GI Y +L+ + +K AE + E E++G+ D
Sbjct: 316 DSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEH 375
Query: 331 VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA-------- 382
L+ Y+ G E V++ M+ ++ + + ++ GF + RG W
Sbjct: 376 TYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGF-RDRGEWQKTFQVLKE 434
Query: 383 ----------------------------AVKVYEQLISQGCIPGQVTYASIINAYCRIAL 414
A+ +++++S+G P +VT+ ++I+ +C+
Sbjct: 435 MKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGR 494
Query: 415 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNS 474
+ AE++F M+++G C Y+ M+ YG R D L+ KMK++G PNV + +
Sbjct: 495 HIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTT 554
Query: 475 LMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534
L+D++G++ + +EM+ + P Y +I+AY + + V + +G
Sbjct: 555 LVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDG 614
Query: 535 GVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
++ F + + E +LQ MK G K D Y + M AL
Sbjct: 615 LKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKAL 664
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/378 (18%), Positives = 175/378 (46%), Gaps = 3/378 (0%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
++E+++ +GI + Y +++ Y K G + ++ E + R + H Y +L D
Sbjct: 326 LFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSP---DEHTYSLLID 382
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
+ +GR A ++M+ + + +++ L+ F E + ++ KE + G+
Sbjct: 383 AYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVY 387
D + ++ + + ++ + + M + ++ +++ K + A +++
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502
Query: 388 EQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 447
E + +GC+P TY +IN+Y + +++ +M+ +G VV ++++V +YGK+
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562
Query: 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY 507
GR DA+ + +MK+ G +P+ +YN+L++ + + Q ++ M + P ++
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622
Query: 508 TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567
++I+A+ R + NG D ++ ++ + +++ + ++M
Sbjct: 623 NSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIM 682
Query: 568 EGTKLDERLYHSAMNALR 585
G K D + +ALR
Sbjct: 683 SGCKPDRKARSMLRSALR 700
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 151/325 (46%), Gaps = 9/325 (2%)
Query: 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEA 320
+Y IL +LG+S + +EA + +K L P Y +LI + A +++ A L +
Sbjct: 169 LYSILIHALGRSEKLYEAFL----LSQKQTLT-PLTYNALIGACARNNDIEKALNLIAKM 223
Query: 321 EEKGMLRDPEVCLKLVLMYI-EEGLVEKT--LDVVESMKNAKLKISDCISCAIVNGFSKR 377
+ G D V LV+ + ++ L + + ++ KL++ + I+ GF+K
Sbjct: 224 RQDGYQSD-FVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKS 282
Query: 378 RGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAY 437
A+++ + G T SII+A +AE +F E++Q G AY
Sbjct: 283 GDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAY 342
Query: 438 SSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497
++++ Y KTG ++DA +V++M+ +G P+ Y+ L+D + A + KEME
Sbjct: 343 NALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEA 402
Query: 498 RKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEE 557
V P+ ++ +++ + E+ + E + G DR +++ F K + ++
Sbjct: 403 GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 462
Query: 558 LVKLLQDMKSEGTKLDERLYHSAMN 582
+ M SEG + D +++ ++
Sbjct: 463 AMTTFDRMLSEGIEPDRVTWNTLID 487
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 109/522 (20%), Positives = 232/522 (44%), Gaps = 5/522 (0%)
Query: 77 VPDAKKFDSFLHGMLKDPQTQE-LAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDS 135
+P+ ++ L G+ + ++QE L + + P+ + +I + D
Sbjct: 155 IPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214
Query: 136 IVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAFNSAMG 194
S + +LPD T + ++A+ +A+ A +L + +G + + +NS +
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274
Query: 195 GYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS 254
GY I +KM+S G+ D Y +M+ K G + +F R L
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL-- 332
Query: 255 TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAE 314
P T Y L G E M GI D +++ LIC++A +V A
Sbjct: 333 KPEIT-TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391
Query: 315 ELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGF 374
+F + ++G+ + ++ + + G VE + E M + L + + ++++G
Sbjct: 392 LVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 451
Query: 375 SKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCV 434
+ A ++ +++ +G + + SII+++C+ ++EK+F M + G V
Sbjct: 452 CTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV 511
Query: 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKE 494
+ Y++++ Y G++ +AM L++ M + G +PN Y++L++ + + + L+KE
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKE 571
Query: 495 MERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQ 554
ME V+PD ++Y ++ + R + Y +G I+ + I++ K
Sbjct: 572 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKL 631
Query: 555 IEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWL 596
++ +++ Q++ KL+ R ++ ++AL G +A+ L
Sbjct: 632 TDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDL 673
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/452 (18%), Positives = 184/452 (40%), Gaps = 4/452 (0%)
Query: 148 VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTI 206
V PD T L+ C RA + + L I G + +AF + G +
Sbjct: 83 VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142
Query: 207 -LVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265
+V +M G + + Y +++ S++ L + +P Y +
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202
Query: 266 CDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325
+ K G + +A + +M ++GIL D Y S+I + + A E+ + G+
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262
Query: 326 LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY-WAAV 384
+ D ++ Y G ++ + ++ M++ ++ D ++ +++ + + G A
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVE-PDVVTYSLLMDYLCKNGRCMEAR 321
Query: 385 KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 444
K+++ + +G P TY +++ Y + + M + G +S ++ Y
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381
Query: 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504
K G++ AM + +KM+ +G PN Y +++ + ++ + +++M ++P
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441
Query: 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564
+ Y ++I +++ + E G ++ ++ K ++ E KL +
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501
Query: 565 MKSEGTKLDERLYHSAMNALRDAGLQMQAQWL 596
M G K + Y++ +N AG +A L
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKL 533
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 97/466 (20%), Positives = 177/466 (37%), Gaps = 47/466 (10%)
Query: 77 VPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQS------ 130
+PD ++S LHG Q +E A + + + P+ T LL+ YL ++
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKE-AIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRCMEA 320
Query: 131 -KKWDSIV--SLSEDFKIYNVL--------------------------PDAHTCSRLVAS 161
K +DS+ L + Y L PD + S L+
Sbjct: 321 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI-- 378
Query: 162 CVRARKFKIANTLLQVFITDGEIAL----LAFNSAMGGYNKLHMYYSTILVYEKMKSAGI 217
C A++ K+ +L VF + L + + + +G K +L +E+M G+
Sbjct: 379 CAYAKQGKVDQAML-VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 437
Query: 218 VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277
+ Y ++ E+ L LE R + +T + + DS K GR E
Sbjct: 438 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI---CLNTIFFNSIIDSHCKEGRVIE 494
Query: 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVL 337
+ K F M G+ + Y +LI + ++ A +L G+ + L+
Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554
Query: 338 MYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIP 397
Y + +E L + + M+++ + I+ G + R AA ++Y ++ G
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI 614
Query: 398 GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLV 457
TY I++ C+ L A ++F + ++ M+ K GR +A L
Sbjct: 615 ELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLF 674
Query: 458 AKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD 503
+ G PN W Y + + L ++++L+ ME T D
Sbjct: 675 VAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVD 720
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 169/381 (44%), Gaps = 19/381 (4%)
Query: 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHM 261
Y V +M G + D+ Y +++ E LF E K L + ++
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYT--- 520
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
Y I+ DS K+G +A K+F +M+E G + Y +LI ++ +V A ELF+
Sbjct: 521 YTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETML 580
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK--------LKISDCIS------ 367
+G L + L+ + + G VEK + E M +K K D S
Sbjct: 581 SEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVV 640
Query: 368 --CAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEM 425
A+++GF K A K+ + + +GC P Q+ Y ++I+ C++ +A++V EM
Sbjct: 641 TYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEM 700
Query: 426 QQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485
+ GF + YSS++ Y K R A +++KM C PNV IY ++D +
Sbjct: 701 SEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT 760
Query: 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIM 545
+ KL + ME + P+ V+YT +I + + + C++ G + ++
Sbjct: 761 DEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVL 820
Query: 546 VGVFSKLSQIEELVKLLQDMK 566
+ K ++ LL++MK
Sbjct: 821 IDHCCKNGALDVAHNLLEEMK 841
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 109/489 (22%), Positives = 201/489 (41%), Gaps = 59/489 (12%)
Query: 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA- 171
F P+ ST ++ YL + K + L E+ K ++ D +T + +V S +A + A
Sbjct: 479 FIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQAR 538
Query: 172 ---NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIM 228
N + +V T ++ + + + Y K ++E M S G + + Y ++
Sbjct: 539 KWFNEMREVGCTPN---VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595
Query: 229 EAYYKIGDSEKVAALFLE-CKSRKL------------DSTPFSTHMYKILCDSLGKSGRA 275
+ + K G EK +F C S+ + +S + Y L D KS R
Sbjct: 596 DGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRV 655
Query: 276 FEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL 335
EA K M +G + +Y +LI + ++ A+E+ E E G P
Sbjct: 656 EEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGF---PAT---- 708
Query: 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC 395
+Y L+++ V KR+ A KV +++ C
Sbjct: 709 --LYTYSSLIDRYFKV------------------------KRQDL--ASKVLSKMLENSC 740
Query: 396 IPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMW 455
P V Y +I+ C++ +A K+ M++KG VV Y++M+ +G G+I +
Sbjct: 741 APNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLE 800
Query: 456 LVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYN 515
L+ +M +KG PN Y L+D + L L +EM++ Y VI +N
Sbjct: 801 LLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFN 860
Query: 516 RAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDER 575
+EF + +E + ++ +++ K ++E ++LL+++ + L +
Sbjct: 861 --KEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVD- 917
Query: 576 LYHSAMNAL 584
Y S N+L
Sbjct: 918 -YSSTYNSL 925
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 114/553 (20%), Positives = 219/553 (39%), Gaps = 121/553 (21%)
Query: 104 YNEAKKLPE---FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVA 160
+ EA L E F P+ LI L ++ ++ + + + LP+ T S L+
Sbjct: 286 WREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLC 345
Query: 161 SCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGY--NKLHMYYSTILVYEKMKSAG- 216
C+ ++ +L + + +G + FNS + Y + H Y +L +KM G
Sbjct: 346 GCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLL--KKMVKCGH 403
Query: 217 --------IVLDSGC------YCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMY 262
I++ S C C +++ K A + L K++ + F+
Sbjct: 404 MPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLN----KINVSSFT---- 455
Query: 263 KILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE 322
+ LC S GK +AF + R+M +G + D S Y+ ++ + ++++LA LF+E +
Sbjct: 456 RCLC-SAGKYEKAFSVI---REMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 511
Query: 323 KGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA 382
G++ D +V + + GL+E+
Sbjct: 512 GGLVADVYTYTIMVDSFCKAGLIEQ----------------------------------- 536
Query: 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM-- 440
A K + ++ GC P VTY ++I+AY + S A ++F M +G +V YS++
Sbjct: 537 ARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596
Query: 441 ------------------------------------------VAMYG-------KTGRIR 451
V YG K+ R+
Sbjct: 597 GHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 656
Query: 452 DAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVI 511
+A L+ M +GCEPN +Y++L+D + L + +++ EM +Y+++I
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716
Query: 512 SAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTK 571
Y + + D+ K ++ N + I M+ K+ + +E KL+Q M+ +G +
Sbjct: 717 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 776
Query: 572 LDERLYHSAMNAL 584
+ Y + ++
Sbjct: 777 PNVVTYTAMIDGF 789
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSL 269
E+MK + Y +++E + K E + +L L + + D+ PF + +Y++L D+L
Sbjct: 838 EEMKQTHWPTHTAGYRKVIEGFNK----EFIESLGLLDEIGQDDTAPFLS-VYRLLIDNL 892
Query: 270 GKSGRAFEALKFFRDMK--EKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
K+ R AL+ ++ +++ S Y SLI S +V+ A +LF E +KG++
Sbjct: 893 IKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVI- 951
Query: 328 DPEV 331
PE+
Sbjct: 952 -PEM 954
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/509 (22%), Positives = 217/509 (42%), Gaps = 77/509 (15%)
Query: 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183
+R +V++ + + E+ + +PD C+ L+ R K + A +L++ G
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 184 IA-LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL----------DSGCYCQIMEAYY 232
+ ++ +N + GY K + + V ++M + V+ DSG Q ME
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 233 KI--------------------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS 272
++ DS A+ L + R TP Y +L + + K
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP-DVVTYNVLVNGICKE 287
Query: 273 GRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVC 332
GR EA+KF DM G + + ++ S S AE+L + KG P V
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF--SPSVV 345
Query: 333 LKLVLM--YIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQL 390
+L+ +GL+ + +D++E M + + +++GF K + A++ E++
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 391 ISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 450
+S+GC P VTY +++ A C K G++
Sbjct: 406 VSRGCYPDIVTYNTMLTALC-----------------------------------KDGKV 430
Query: 451 RDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTV 510
DA+ ++ ++ +KGC P + YN+++D +A + KL EM + + PD ++Y+++
Sbjct: 431 EDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490
Query: 511 ISAYNRAREFDMCVKFYNEF-RMNGGVIDRAIA--GIMVGVFSKLSQIEELVKLLQDMKS 567
+ +R + D +KF++EF RM G+ A+ IM+G K Q + + L M +
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERM--GIRPNAVTFNSIMLG-LCKSRQTDRAIDFLVFMIN 547
Query: 568 EGTKLDERLYHSAMNALRDAGLQMQAQWL 596
G K +E Y + L G+ +A L
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALEL 576
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/358 (17%), Positives = 136/358 (37%), Gaps = 53/358 (14%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P+ T +L+ + + + D + D P+ T + ++ S ++ A L
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331
Query: 175 LQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233
L + G +++ FN + + + I + EKM G +S Y ++ +
Sbjct: 332 LADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF-- 389
Query: 234 IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED 293
CK +K+D A+++ M +G D
Sbjct: 390 -------------CKEKKMD-----------------------RAIEYLERMVSRGCYPD 413
Query: 294 PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMY--IEEGLVE----- 346
Y +++ + +V+ A E+ + KG C +++ Y + +GL +
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVEILNQLSSKG-------CSPVLITYNTVIDGLAKAGKTG 466
Query: 347 KTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASII 406
K + +++ M+ LK ++V G S+ A+K + + G P VT+ SI+
Sbjct: 467 KAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIM 526
Query: 407 NAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464
C+ +A + M +G +Y+ ++ G ++A+ L+ ++ KG
Sbjct: 527 LGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Score = 36.6 bits (83), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 37/224 (16%)
Query: 108 KKLPEF--RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRA 165
+K+P+ +P + L+ + KK D + E PD T + ++ + +
Sbjct: 368 EKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427
Query: 166 RKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCY 224
K + A +L + G L+ +N+ + G K I + ++M++ + D+ Y
Sbjct: 428 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487
Query: 225 CQIMEAYYKIGDSEKVAALFLE--------------------CKSRKLDST--------- 255
++ + G ++ F E CKSR+ D
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMIN 547
Query: 256 ----PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS 295
P T Y IL + L G A EAL+ ++ KG+++ S
Sbjct: 548 RGCKPNETS-YTILIEGLAYEGMAKEALELLNELCNKGLMKKSS 590
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 3/369 (0%)
Query: 209 YEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS 268
+ +M GI+ D+ Y +++ + K GD + F E SR D TP Y +
Sbjct: 339 FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR--DITP-DVLTYTAIISG 395
Query: 269 LGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD 328
+ G EA K F +M KG+ D + LI + +K A + + G +
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPN 455
Query: 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYE 388
L+ +EG ++ +++ M L+ + +IVNG K AVK+
Sbjct: 456 VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG 515
Query: 389 QLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 448
+ + G VTY ++++AYC+ KA+++ EM KG +V ++ ++ + G
Sbjct: 516 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575
Query: 449 RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYT 508
+ D L+ M AKG PN +NSL+ + NL+ ++K+M R V PD +Y
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYE 635
Query: 509 TVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568
++ + +AR + E + G + + +++ F K + E ++ M+ E
Sbjct: 636 NLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695
Query: 569 GTKLDERLY 577
G D+ ++
Sbjct: 696 GLAADKEIF 704
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 164/383 (42%), Gaps = 42/383 (10%)
Query: 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFL--ECKSRKLDSTPFSTHM 261
+ I+V+ + G+ + Y ++ ++G ++ L L E K D +ST
Sbjct: 229 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYST-- 286
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
+ + + G + K MK KG+ + IY S+I I ++ AEE F E
Sbjct: 287 ---VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 343
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381
+G+L D + +++GF KR
Sbjct: 344 RQGILPDT-----------------------------------VVYTTLIDGFCKRGDIR 368
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
AA K + ++ S+ P +TY +II+ +C+I +A K+F EM KG + V ++ ++
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428
Query: 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501
Y K G ++DA + M GC PNV Y +L+D + +L +L EM + +
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488
Query: 502 PDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561
P+ +Y ++++ ++ + VK EF G D ++ + K ++++ ++
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 562 LQDMKSEGTKLDERLYHSAMNAL 584
L++M +G + ++ MN
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGF 571
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 149/325 (45%)
Query: 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVL 337
A+ FR+ E G+ + + Y +I + +K A L E KG D +V
Sbjct: 230 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289
Query: 338 MYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIP 397
Y G ++K ++E MK LK + I +I+ + A + + ++I QG +P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 398 GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLV 457
V Y ++I+ +C+ A K F EM + V+ Y+++++ + + G + +A L
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409
Query: 458 AKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517
+M KG EP+ + L++ + +A +++ ++ M + +P+ V+YTT+I +
Sbjct: 410 HEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 469
Query: 518 REFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLY 577
+ D + +E G + +V K IEE VKL+ + ++ G D Y
Sbjct: 470 GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTY 529
Query: 578 HSAMNALRDAGLQMQAQWLQQNFEG 602
+ M+A +G +AQ + + G
Sbjct: 530 TTLMDAYCKSGEMDKAQEILKEMLG 554
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 5/264 (1%)
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY--WAAVK 385
DP V + ++ GL+ + V E M N L +S SC + + Y A+
Sbjct: 174 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLS-VDSCNVYLTRLSKDCYKTATAII 232
Query: 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445
V+ + G +Y +I+ C++ +A + + M+ KG+ V++YS++V Y
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292
Query: 446 KTGRIRDAMW-LVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504
+ G + D +W L+ MK KG +PN +IY S++ + R L + E+ + EM R+ + PD
Sbjct: 293 RFGEL-DKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351
Query: 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564
V YTT+I + + + KF+ E D ++ F ++ + E KL +
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 411
Query: 565 MKSEGTKLDERLYHSAMNALRDAG 588
M +G + D + +N AG
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAG 435
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 144/340 (42%), Gaps = 8/340 (2%)
Query: 147 NVLPDAHTCSRLVAS-CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYST 205
++ PD T + +++ C + ++F E + F + GY K
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440
Query: 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265
V+ M AG + Y +++ K GD + L E L F+ Y +
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT---YNSI 497
Query: 266 CDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325
+ L KSG EA+K + + G+ D Y +L+ ++ E+ A+E+ KE KG+
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557
Query: 326 LRDPEVCLKLVLM--YIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAA 383
P + VLM + G++E ++ M + + ++V + R AA
Sbjct: 558 --QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Query: 384 VKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 443
+Y+ + S+G P TY +++ +C+ +A +F EM+ KGF V YS ++
Sbjct: 616 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKG 675
Query: 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAK 483
+ K + +A + +M+ +G + I++ D + K
Sbjct: 676 FLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGK 715
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/404 (21%), Positives = 189/404 (46%), Gaps = 5/404 (1%)
Query: 181 DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240
D IA+ +++ M GY + ++V++++K G Y ++ Y K+G K+
Sbjct: 446 DAPIAI--YHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVG---KI 500
Query: 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASL 300
+ + K + + Y ++ + K A F DM ++G+ D +Y ++
Sbjct: 501 SKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNI 560
Query: 301 ICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360
I +F + + A + KE ++ + ++ Y + G + ++L+V + M+
Sbjct: 561 ISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGC 620
Query: 361 KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEK 420
+ ++NG ++R AV++ +++ G + TY I+ Y + KA +
Sbjct: 621 VPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFE 680
Query: 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480
F +Q +G D + Y +++ K+GR++ A+ + +M A+ N ++YN L+D
Sbjct: 681 YFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWA 740
Query: 481 RAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRA 540
R ++ + L ++M++ V PD +YT+ ISA ++A + + + E G +
Sbjct: 741 RRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIK 800
Query: 541 IAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
++ +++ S E+ + ++MK+ G K D+ +YH + +L
Sbjct: 801 TYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 844
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 184/452 (40%), Gaps = 75/452 (16%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC-KSRKLDSTPFSTHMYKILC 266
+E+M++ GI S Y ++ AY D ++ L C + K + S Y ++
Sbjct: 331 TFERMRARGITPTSRIYTSLIHAYAVGRDMDEA----LSCVRKMKEEGIEMSLVTYSVIV 386
Query: 267 DSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG-- 324
K+G A A +F + K + SIY +I + ++ AE L +E EE+G
Sbjct: 387 GGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGID 446
Query: 325 --------------MLRDPE---VCLK----------------LVLMYIEEGLVEKTLDV 351
M+ D + V K L+ +Y + G + K L+V
Sbjct: 447 APIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEV 506
Query: 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411
MK +K + ++NGF K + + A V+E ++ +G P + Y +II+A+C
Sbjct: 507 SRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCG 566
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471
+ +A + EMQ+ + ++ Y K+G +R ++ + M+ GC P V
Sbjct: 567 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626
Query: 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531
+N L++ + + + ++ EM V+ ++ +YT ++ Y + +++ +
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 686
Query: 532 MNG------------------GVIDRAIA-----------------GIMVGVFSKLSQIE 556
G G + A+A I++ +++ +
Sbjct: 687 NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 746
Query: 557 ELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
E L+Q MK EG K D Y S ++A AG
Sbjct: 747 EAADLIQQMKKEGVKPDIHTYTSFISACSKAG 778
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 161/359 (44%), Gaps = 5/359 (1%)
Query: 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI 290
Y + GD + F ++R + TP ++ +Y L + EAL R MKE+GI
Sbjct: 319 YGRRGDMHRARETFERMRARGI--TP-TSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGI 375
Query: 291 LEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLD 350
Y+ ++ F+ + A+ F EA+ + + K++ + + +E+
Sbjct: 376 EMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEA 435
Query: 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410
+V M+ + I +++G++ + V+++L G P VTY +IN Y
Sbjct: 436 LVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYT 495
Query: 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVW 470
++ SKA +V M+++G + YS M+ + K +A + M +G +P+V
Sbjct: 496 KVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVI 555
Query: 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530
+YN+++ N+ + + KEM++ + P ++ +I Y ++ + ++ ++
Sbjct: 556 LYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMM 615
Query: 531 RMNGGVID-RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
R G V G++ G+ K Q+E+ V++L +M G +E Y M G
Sbjct: 616 RRCGCVPTVHTFNGLINGLVEK-RQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVG 673
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/372 (19%), Positives = 160/372 (43%), Gaps = 6/372 (1%)
Query: 108 KKLPE--FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRA 165
K+L E F P T LI + K + +S K V + T S ++ V+
Sbjct: 473 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKL 532
Query: 166 RKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCY 224
+ + A + + + +G + ++ +N+ + + + I ++M+ + +
Sbjct: 533 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Query: 225 CQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD 284
I+ Y K GD + +F R+ P + H + L + L + + +A++ +
Sbjct: 593 MPIIHGYAKSGDMRRSLEVF--DMMRRCGCVP-TVHTFNGLINGLVEKRQMEKAVEILDE 649
Query: 285 MKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGL 344
M G+ + Y ++ +AS+ + A E F + +G+ D L+ + G
Sbjct: 650 MTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGR 709
Query: 345 VEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYAS 404
++ L V + M + + + +++G+++R W A + +Q+ +G P TY S
Sbjct: 710 MQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTS 769
Query: 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464
I+A + ++A + EM+ G + Y++++ + + A+ +MKA G
Sbjct: 770 FISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 829
Query: 465 CEPNVWIYNSLM 476
+P+ +Y+ L+
Sbjct: 830 IKPDKAVYHCLL 841
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461
+ ++I+A+ +I+ S+ E + MV YG+ G + A +M+
Sbjct: 294 WQAVISAFEKISKPSRTE-----------------FGLMVKFYGRRGDMHRARETFERMR 336
Query: 462 AKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFD 521
A+G P IY SL+ + +++ + ++M+ + V+Y+ ++ +++A +
Sbjct: 337 ARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAE 396
Query: 522 MCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581
+++E + ++ +I G ++ + +E L+++M+ EG +YH+ M
Sbjct: 397 AADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMM 456
Query: 582 NA 583
+
Sbjct: 457 DG 458
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/239 (19%), Positives = 91/239 (38%), Gaps = 38/239 (15%)
Query: 381 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM 440
W AV + IS+ P + + ++ Y R +A + F M+ +G Y+S+
Sbjct: 294 WQAVISAFEKISK---PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSL 350
Query: 441 VAMYGKTGRIRDAMWLVAKMKAKGCEP--------------------------------- 467
+ Y + +A+ V KMK +G E
Sbjct: 351 IHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHK 410
Query: 468 --NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVK 525
N IY ++ H + N+ + E L +EME + Y T++ Y + +
Sbjct: 411 TLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLV 470
Query: 526 FYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
+ + G G ++ +++K+ +I + +++ + MK EG K + + Y +N
Sbjct: 471 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGF 529
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 109/295 (36%), Gaps = 51/295 (17%)
Query: 78 PDAKKFDSFLHGMLK--DPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDS 135
P + F +HG K D + +D +P T LI LV+ ++ +
Sbjct: 587 PTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVH----TFNGLINGLVEKRQMEK 642
Query: 136 IVSLSEDFKIYNVLPDAHTCSRL------VASCVRARKF--KIANTLLQVFITDGEIALL 187
V + ++ + V + HT +++ V +A ++ ++ N L V I E L
Sbjct: 643 AVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLK 702
Query: 188 A----------------------------FNSAMGGYNKLHMYYSTILVYEKMKSAGIVL 219
A +N + G+ + + + ++MK G+
Sbjct: 703 ACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKP 762
Query: 220 DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEAL 279
D Y + A K GD + E ++ L P + Y L ++ +AL
Sbjct: 763 DIHTYTSFISACSKAGDMNRATQTIEEMEA--LGVKP-NIKTYTTLIKGWARASLPEKAL 819
Query: 280 KFFRDMKEKGILEDPSIYASLICSF---ASITEVKLAEELF---KEAEEKGMLRD 328
+ +MK GI D ++Y L+ S ASI E + + KE E G++ D
Sbjct: 820 SCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVD 874
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 155/324 (47%)
Query: 265 LCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG 324
L K G+ + +FF+DM G Y +I +V+ A LF+E + +G
Sbjct: 233 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 292
Query: 325 MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAV 384
++ D ++ + + G ++ T+ E MK+ + A++N F K +
Sbjct: 293 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGL 352
Query: 385 KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 444
+ Y ++ G P V+Y+++++A+C+ + +A K +++M++ G Y+S++
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412
Query: 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504
K G + DA L +M G E NV Y +L+D A+ +++ E+L+ +M+ V P+
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNL 472
Query: 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564
SY +I + +A+ D ++ NE + G D + G + L +IE ++ +
Sbjct: 473 ASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNE 532
Query: 565 MKSEGTKLDERLYHSAMNALRDAG 588
MK G K + +Y + M+A +G
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSG 556
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 164/370 (44%), Gaps = 7/370 (1%)
Query: 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFS 258
L M I + KMK + + ++ + K+G ++ V F + T F+
Sbjct: 205 LGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFT 264
Query: 259 THMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFK 318
Y I+ D + K G A F +MK +G++ D Y S+I F + + F+
Sbjct: 265 ---YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFE 321
Query: 319 EAEEKGMLRDPEVCL--KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK 376
E K M +P+V L+ + + G + L+ MK LK + +V+ F K
Sbjct: 322 EM--KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK 379
Query: 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVA 436
A+K Y + G +P + TY S+I+A C+I S A ++ EM Q G + VV
Sbjct: 380 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 439
Query: 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496
Y++++ R+++A L KM G PN+ YN+L+ +AKN+ + +L E++
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 499
Query: 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIE 556
R + PD + Y T I + + NE + G + I ++ + K
Sbjct: 500 GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPT 559
Query: 557 ELVKLLQDMK 566
E + LL +MK
Sbjct: 560 EGLHLLDEMK 569
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 111/530 (20%), Positives = 210/530 (39%), Gaps = 42/530 (7%)
Query: 71 SHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQS 130
S VP FD+ L +L D E A +++ K+ F +S LL R+ +
Sbjct: 183 STRNVCVPGFGVFDA-LFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRF-AKL 240
Query: 131 KKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAF 189
K D + +D P T + ++ + + A L + G + + +
Sbjct: 241 GKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTY 300
Query: 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKS 249
NS + G+ K+ T+ +E+MK D Y ++ + K G + E K
Sbjct: 301 NSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG 360
Query: 250 RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITE 309
L S Y L D+ K G +A+KF+ DM+ G++ + Y SLI + I
Sbjct: 361 NGLKPNVVS---YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGN 417
Query: 310 VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCA 369
+ A L E + G +E +V T A
Sbjct: 418 LSDAFRLGNEMLQVG---------------VEWNVVTYT--------------------A 442
Query: 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429
+++G A +++ ++ + G IP +Y ++I+ + + +A ++ E++ +G
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502
Query: 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVE 489
++ Y + + +I A ++ +MK G + N IY +LMD + ++ N +
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 562
Query: 490 KLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-IDRAIAGIMVGV 548
L EM+ + V++ +I + + V ++N + G+ + AI M+
Sbjct: 563 HLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDG 622
Query: 549 FSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598
K +Q+E L + M +G D Y S M+ G ++A L+
Sbjct: 623 LCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRD 672
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 110/521 (21%), Positives = 210/521 (40%), Gaps = 25/521 (4%)
Query: 51 HRFFQVNASTNFPTIELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKL 110
HRF ++ + + +D A P ++ + M K+ E A + E K
Sbjct: 235 HRFAKLGKTDDVK--RFFKDMIGAGARPTVFTYNIMIDCMCKEGDV-EAARGLFEEMK-- 289
Query: 111 PEFR---PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK 167
FR P+ T +I + + D V E+ K PD T + L+ + K
Sbjct: 290 --FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 347
Query: 168 FKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQ 226
I + +G + ++++++ + + K M I Y M+ G+V + Y
Sbjct: 348 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 407
Query: 227 IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMK 286
+++A KIG+ L E ++ ++ Y L D L + R EA + F M
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVE---WNVVTYTALIDGLCDAERMKEAEELFGKMD 464
Query: 287 EKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGL-- 344
G++ + + Y +LI F + A EL E + +G+ P++ L ++ GL
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI--KPDLLLYGTFIW---GLCS 519
Query: 345 ---VEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401
+E V+ MK +K + I +++ + K + + +++ VT
Sbjct: 520 LEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT 579
Query: 402 YASIINAYCRIALYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460
+ +I+ C+ L SKA F + G +++M+ K ++ A L +M
Sbjct: 580 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQM 639
Query: 461 KAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF 520
KG P+ Y SLMD + + N+ + L +M + D ++YT+++ + +
Sbjct: 640 VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQL 699
Query: 521 DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561
F E G D + ++ +L I+E V+L
Sbjct: 700 QKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 58/307 (18%), Positives = 122/307 (39%), Gaps = 39/307 (12%)
Query: 76 AVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDS 135
+P+ +++ +HG +K + + A + NE K +P+ I L +K ++
Sbjct: 468 VIPNLASYNALIHGFVK-AKNMDRALELLNELKG-RGIKPDLLLYGTFIWGLCSLEKIEA 525
Query: 136 IVSLSEDFK---------IYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG---- 182
+ + K IY L DA+ FK N + + D
Sbjct: 526 AKVVMNEMKECGIKANSLIYTTLMDAY--------------FKSGNPTEGLHLLDEMKEL 571
Query: 183 --EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA-GIVLDSGCYCQIMEAYYKIGDSEK 239
E+ ++ F + G K + + + ++ + G+ ++ + +++ K E
Sbjct: 572 DIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEA 631
Query: 240 VAALFLECKSRKL--DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297
LF + + L D T +++ M D K G EAL M E G+ D Y
Sbjct: 632 ATTLFEQMVQKGLVPDRTAYTSLM-----DGNFKQGNVLEALALRDKMAEIGMKLDLLAY 686
Query: 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357
SL+ + +++ A +E +G+ D +C+ ++ + E G +++ +++ +
Sbjct: 687 TSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMK 746
Query: 358 AKLKISD 364
+L SD
Sbjct: 747 HQLLTSD 753
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 111/503 (22%), Positives = 219/503 (43%), Gaps = 48/503 (9%)
Query: 104 YNEAKKL----PEFRPEKSTLKL--LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157
+NEA L E RP S + L+ + + KK+D +++L + +I V D +TC+
Sbjct: 53 FNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112
Query: 158 LVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216
L+ ++ + +A++ L + G E ++ F S + G+ + + + +M G
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172
Query: 217 IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276
I D Y I+++ K G +LF + ++ + MY L + L SGR
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRP---DVVMYTSLVNGLCNSGRWR 229
Query: 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336
+A R M ++ I D + +LI +F + AEEL+ E ++
Sbjct: 230 DADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNE---------------MI 274
Query: 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCI 396
M I + T +++NGF A +++ + ++GC
Sbjct: 275 RMSIAPNIFTYT--------------------SLINGFCMEGCVDEARQMFYLMETKGCF 314
Query: 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWL 456
P V Y S+IN +C+ A K+F EM QKG + Y++++ +G+ G+ A +
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 457 VAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK---VTPDKVSYTTVISA 513
+ M ++G PN+ YN L+ +++ ++++M++R+ V P+ +Y ++
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHG 434
Query: 514 YNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLD 573
+ + + + + R I I++ K +++ V L + S+G K +
Sbjct: 435 LCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPN 494
Query: 574 ERLYHSAMNALRDAGLQMQAQWL 596
Y + ++ L GL+ +A L
Sbjct: 495 VVTYTTMISGLFREGLKHEAHVL 517
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 168/341 (49%), Gaps = 4/341 (1%)
Query: 258 STHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLI--CSFASITEVKLAEE 315
+ + + L + G+SG EA+ F MKE G+ + Y ++I C + E K +
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM-EFKQVAK 325
Query: 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375
F E + G+ D L+ + GL E ++ + M N +++ +++
Sbjct: 326 FFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAIC 385
Query: 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV 435
K A ++ Q+ + +P V+Y+++I+ + + + +A +F EM+ G V
Sbjct: 386 KGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445
Query: 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
+Y++++++Y K GR +A+ ++ +M + G + +V YN+L+ +G+ +V+K++ EM
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI 555
+R V P+ ++Y+T+I Y++ + ++ + EF+ G D + ++ K +
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565
Query: 556 EELVKLLQDMKSEGTKLDERLYHSAMNAL-RDAGLQMQAQW 595
V L+ +M EG + Y+S ++A R A + A +
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADY 606
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 4/301 (1%)
Query: 186 LLAFNSAMGGYNKLHMYYSTIL-VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALF 244
L+ +N+ + K M + + +++M+ G+ D + ++ + G E LF
Sbjct: 303 LVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLF 362
Query: 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304
E +R+++ FS Y L D++ K G+ A + M K I+ + Y+++I F
Sbjct: 363 DEMTNRRIEQDVFS---YNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGF 419
Query: 305 ASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD 364
A A LF E G+ D L+ +Y + G E+ LD++ M + +K
Sbjct: 420 AKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDV 479
Query: 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
A++ G+ K+ Y KV+ ++ + +P +TY+++I+ Y + LY +A ++F E
Sbjct: 480 VTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFRE 539
Query: 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484
+ G VV YS+++ K G + A+ L+ +M +G PNV YNS++D GR+
Sbjct: 540 FKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSAT 599
Query: 485 L 485
+
Sbjct: 600 M 600
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 168/370 (45%), Gaps = 8/370 (2%)
Query: 235 GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF--FRDMKEKGILE 292
GD E +L L +S KL + T++ + LG +A+ F F +E+ E
Sbjct: 177 GDDEMFHSLMLSFES-KLCGSDDCTYIIR----ELGNRNECDKAVGFYEFAVKRERRKNE 231
Query: 293 DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVV 352
+ +++I + +V +A+ +F+ A G L+ Y GL E+ + V
Sbjct: 232 QGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVF 291
Query: 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAV-KVYEQLISQGCIPGQVTYASIINAYCR 411
SMK L+ + A+++ K + V K ++++ G P ++T+ S++ R
Sbjct: 292 NSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSR 351
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471
L+ A +F EM + ++ V +Y++++ K G++ A ++A+M K PNV
Sbjct: 352 GGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVS 411
Query: 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531
Y++++D +A + L+ EM + D+VSY T++S Y + + + E
Sbjct: 412 YSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA 471
Query: 532 MNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQM 591
G D ++G + K + +E+ K+ +MK E + Y + ++ GL
Sbjct: 472 SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYK 531
Query: 592 QAQWLQQNFE 601
+A + + F+
Sbjct: 532 EAMEIFREFK 541
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 173/366 (47%), Gaps = 14/366 (3%)
Query: 218 VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF- 276
+LD Y I+ AY + G EK LF K ++ +P + Y ++ D GK GR++
Sbjct: 207 LLDVRAYTTILHAYSRTGKYEKAIDLFERMK--EMGPSP-TLVTYNVILDVFGKMGRSWR 263
Query: 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336
+ L +M+ KG+ D ++++ + A ++ A+E F E + G L+
Sbjct: 264 KILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALL 323
Query: 337 LMYIEEGLVEKTLDVVESMKNAK-----LKISDCISCAIVNGFSKRRGYWAAVKVYEQLI 391
++ + G+ + L V++ M+ + ++ ++ + GFSK A V E +
Sbjct: 324 QVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKE-----AAGVIEMMT 378
Query: 392 SQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 451
+G +P +TY ++I+AY + +A K+F M++ G Y++++++ GK R
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSN 438
Query: 452 DAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVI 511
+ + ++ MK+ GC PN +N+++ + G + V ++++EM+ PD+ ++ T+I
Sbjct: 439 EMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLI 498
Query: 512 SAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTK 571
SAY R K Y E G ++ ++ ++ DMKS+G K
Sbjct: 499 SAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFK 558
Query: 572 LDERLY 577
E Y
Sbjct: 559 PTETSY 564
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/523 (20%), Positives = 221/523 (42%), Gaps = 40/523 (7%)
Query: 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLL 175
+ +++ +R L + ++ L + + L D + ++ + R K++ A L
Sbjct: 174 DHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLF 233
Query: 176 QVFITDG-EIALLAFNSAMGGYNKLHMYYSTIL-VYEKMKSAGIVLDSGCYCQIMEAYYK 233
+ G L+ +N + + K+ + IL V ++M+S G+ D ++ A +
Sbjct: 234 ERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAR 293
Query: 234 IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED 293
G + F E KS + T Y L GK+G EAL ++M+E D
Sbjct: 294 EGLLREAKEFFAELKSCGYEP---GTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPAD 350
Query: 294 PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVE 353
Y L+ ++ K A + + +KG++ + ++ Y + G ++ L +
Sbjct: 351 SVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFY 410
Query: 354 SMKNAKLKISDCISCAIV---------------------NGFSKRRGYWAAV-------- 384
SMK A + C A++ NG S R W +
Sbjct: 411 SMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKG 470
Query: 385 ------KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS 438
+V+ ++ S G P + T+ ++I+AY R A K++ EM + GF+ CV Y+
Sbjct: 471 MDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYN 530
Query: 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498
+++ + G R +++ MK+KG +P Y+ ++ + + N +E++ ++
Sbjct: 531 ALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEG 590
Query: 499 KVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEEL 558
++ P + T++ A + R + + F+ +G D I M+ +F++ + ++
Sbjct: 591 QIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQA 650
Query: 559 VKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601
+L+ ++ +G D Y+S M+ G +A+ + + E
Sbjct: 651 EGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 105/533 (19%), Positives = 209/533 (39%), Gaps = 77/533 (14%)
Query: 74 QTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQ-SKK 132
Q + D + + + LH + + E A D + K++ P T +++ + +
Sbjct: 204 QEYLLDVRAYTTILHAYSRTGK-YEKAIDLFERMKEMGP-SPTLVTYNVILDVFGKMGRS 261
Query: 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA-------------------NT 173
W I+ + ++ + + D TCS ++++C R + A N
Sbjct: 262 WRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321
Query: 174 LLQVFITDG----EIALL-------------AFNSAMGGYNKLHMYYSTILVYEKMKSAG 216
LLQVF G +++L +N + Y + V E M G
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381
Query: 217 IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276
++ ++ Y +++AY K G ++ LF K + P +T Y + LGK R+
Sbjct: 382 VMPNAITYTTVIDAYGKAGKEDEALKLFYSMK--EAGCVP-NTCTYNAVLSLLGKKSRSN 438
Query: 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336
E +K DMK G + + + +++ + K +F+E + G D + L+
Sbjct: 439 EMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLI 498
Query: 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCI 396
Y G + M A A++N +++ + + V + S+G
Sbjct: 499 SAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFK 558
Query: 397 PGQVTYASIINAYCRIALY-----------------------------------SKAEKV 421
P + +Y+ ++ Y + Y + +E+
Sbjct: 559 PTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERA 618
Query: 422 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481
F ++ G+ +V ++SM++++ + A ++ ++ G P++ YNSLMDM+ R
Sbjct: 619 FTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVR 678
Query: 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534
+ E++ K +E+ ++ PD VSY TVI + R V+ +E G
Sbjct: 679 RGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 125/310 (40%), Gaps = 71/310 (22%)
Query: 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410
+V S + LK+ + V + Y A K+ +++ Q + Y +I++AY
Sbjct: 162 LVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYS 221
Query: 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR--------------------- 449
R Y KA +F M++ G +V Y+ ++ ++GK GR
Sbjct: 222 RTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDE 281
Query: 450 ---------------IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKE 494
+R+A A++K+ G EP YN+L+ + G+A + + KE
Sbjct: 282 FTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKE 341
Query: 495 ME-----------------------------------RRKVTPDKVSYTTVISAYNRARE 519
ME ++ V P+ ++YTTVI AY +A +
Sbjct: 342 MEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGK 401
Query: 520 FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHS 579
D +K + + G V + ++ + K S+ E++K+L DMKS G + +++
Sbjct: 402 EDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNT 461
Query: 580 AMNALRDAGL 589
+ + G+
Sbjct: 462 MLALCGNKGM 471
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/324 (18%), Positives = 142/324 (43%), Gaps = 3/324 (0%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
V+ +MKS G D + ++ AY + G + ++ E ++ Y L +
Sbjct: 478 VFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC---VTTYNALLN 534
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
+L + G DMK KG + Y+ ++ +A E + +E +
Sbjct: 535 ALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFP 594
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVY 387
+ L+L + + + K K I ++++ F++ Y A +
Sbjct: 595 SWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGIL 654
Query: 388 EQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 447
E + G P VTY S+++ Y R KAE++ +++ +V+Y++++ + +
Sbjct: 655 ESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRR 714
Query: 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY 507
G +++A+ ++++M +G P ++ YN+ + + ++E + + M + P+++++
Sbjct: 715 GLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774
Query: 508 TTVISAYNRAREFDMCVKFYNEFR 531
V+ Y RA ++ + F ++ +
Sbjct: 775 KMVVDGYCRAGKYSEAMDFVSKIK 798
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Query: 455 WLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514
WLV + + + + + + GR KL ++ ++ D +YTT++ AY
Sbjct: 161 WLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAY 220
Query: 515 NRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI-EELVKLLQDMKSEGTKLD 573
+R +++ + + + G +++ VF K+ + +++ +L +M+S+G K D
Sbjct: 221 SRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFD 280
Query: 574 ERLYHSAMNALRDAGLQMQAQ 594
E + ++A GL +A+
Sbjct: 281 EFTCSTVLSACAREGLLREAK 301
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/462 (22%), Positives = 201/462 (43%), Gaps = 12/462 (2%)
Query: 77 VPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSI 136
+P +++ L ++ + A + + E + + P T +LIR + D
Sbjct: 166 MPGVLSYNAVLDATIRSKRNISFAENVFKEMLE-SQVSPNVFTYNILIRGFCFAGNIDVA 224
Query: 137 VSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGG 195
++L + + LP+ T + L+ + RK LL+ G E L+++N + G
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
Query: 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDST 255
+ V +M G LD Y +++ Y K G+ + AL + + + T
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQ--ALVMHAEMLRHGLT 342
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315
P S Y L S+ K+G A++F M+ +G+ + Y +L+ F+ + A
Sbjct: 343 P-SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401
Query: 316 LFKEAEEKGMLRDPEVCL--KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS-CAIVN 372
+ +E + G P V L+ + G +E + V+E MK L D +S +++
Sbjct: 402 VLREMNDNGF--SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS-PDVVSYSTVLS 458
Query: 373 GFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432
GF + A++V +++ +G P +TY+S+I +C +A ++ EM + G
Sbjct: 459 GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP 518
Query: 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLW 492
Y++++ Y G + A+ L +M KG P+V Y+ L++ + R+ ++L
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Query: 493 KEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534
++ + P V+Y T+I + EF V F M G
Sbjct: 579 LKLFYEESVPSDVTYHTLIENCSNI-EFKSVVSLIKGFCMKG 619
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 180/379 (47%), Gaps = 13/379 (3%)
Query: 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265
+ +++KM++ G + + Y +++ Y K+ K+ F +S L + Y ++
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKL---RKIDDGFKLLRSMALKGLEPNLISYNVV 281
Query: 266 CDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325
+ L + GR E +M +G D Y +LI + E + L AE M
Sbjct: 282 INGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK--EGNFHQALVMHAE---M 336
Query: 326 LRD---PEVCLKLVLMY--IEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY 380
LR P V L++ + G + + ++ ++ M+ L ++ +V+GFS++
Sbjct: 337 LRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396
Query: 381 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM 440
A +V ++ G P VTY ++IN +C A V +M++KG VV+YS++
Sbjct: 397 NEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTV 456
Query: 441 VAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV 500
++ + ++ + +A+ + +M KG +P+ Y+SL+ + ++ L++EM R +
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516
Query: 501 TPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVK 560
PD+ +YT +I+AY + + ++ +NE G + D +++ +K S+ E +
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKR 576
Query: 561 LLQDMKSEGTKLDERLYHS 579
LL + E + + YH+
Sbjct: 577 LLLKLFYEESVPSDVTYHT 595
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 145/335 (43%)
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
Y L D K + + K R M KG+ + Y +I +K + E
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381
+G D L+ Y +EG + L + M L S ++++ K
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMN 362
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
A++ +Q+ +G P + TY ++++ + + ++A +V EM GF VV Y++++
Sbjct: 363 RAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422
Query: 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501
+ TG++ DA+ ++ MK KG P+V Y++++ R+ ++ + ++ +EM + +
Sbjct: 423 NGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482
Query: 502 PDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561
PD ++Y+++I + R Y E G D ++ + +E+ ++L
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Query: 562 LQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWL 596
+M +G D Y +N L +A+ L
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 110/214 (51%)
Query: 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429
++ GF A+ +++++ ++GC+P VTY ++I+ YC++ K+ M KG
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270
Query: 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVE 489
+ +++Y+ ++ + GR+++ +++ +M +G + YN+L+ + + N Q
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330
Query: 490 KLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVF 549
+ EM R +TP ++YT++I + +A + ++F ++ R+ G + +V F
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390
Query: 550 SKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA 583
S+ + E ++L++M G Y++ +N
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 2/231 (0%)
Query: 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL-YSKAEKVFIEMQQK 428
+V +S+ A+ + + G +PG ++Y ++++A R S AE VF EM +
Sbjct: 140 VVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 429 GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQV 488
V Y+ ++ + G I A+ L KM+ KGC PNV YN+L+D + + + +
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 489 EKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGV 548
KL + M + + P+ +SY VI+ R E G +D ++
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 549 FSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQA-QWLQQ 598
+ K + + + +M G Y S ++++ AG +A ++L Q
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/416 (19%), Positives = 170/416 (40%), Gaps = 35/416 (8%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P T LI + ++ + + + ++ + P+ T + LV + A +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 175 LQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY-- 231
L+ +G +++ +N+ + G+ I V E MK G+ D Y ++ +
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 232 -YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI 290
Y + ++ +V +E K K D+ +S+ L + R EA + +M G+
Sbjct: 463 SYDVDEALRVKREMVE-KGIKPDTITYSS-----LIQGFCEQRRTKEACDLYEEMLRVGL 516
Query: 291 LEDPSIYASLICSFASITEVKLAEELFKEAEEKGML-----------------RDPEVCL 333
D Y +LI ++ +++ A +L E EKG+L R E
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKR 576
Query: 334 KLVLMYIEEGLVEKTL--DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLI 391
L+ ++ EE + ++E+ N + K +++ GF + A +V+E ++
Sbjct: 577 LLLKLFYEESVPSDVTYHTLIENCSNIEFKSV----VSLIKGFCMKGMMTEADQVFESML 632
Query: 392 SQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 451
+ P Y +I+ +CR KA ++ EM + GF V ++V K G++
Sbjct: 633 GKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVN 692
Query: 452 DAMWLVAKMKAKGCE-PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS 506
+ ++ + + CE L++++ R N+ V + EM + P+ +S
Sbjct: 693 ELNSVIVHV-LRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 6/212 (2%)
Query: 395 CIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR-IRDA 453
C + ++ +Y R++L KA + Q GF V++Y++++ ++ R I A
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFA 189
Query: 454 MWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISA 513
+ +M PNV+ YN L+ A N+ L+ +ME + P+ V+Y T+I
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG 249
Query: 514 YNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLD 573
Y + R+ D K + G + +++ + +++E+ +L +M G LD
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309
Query: 574 ERLYHSAMNALRDAG-----LQMQAQWLQQNF 600
E Y++ + G L M A+ L+
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Query: 418 AEKVFIEMQQKGFDKCVVA---YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNS 474
A VF +Q+ +D C + +V Y + I A+ +V +A G P V YN+
Sbjct: 116 ASLVFKSLQET-YDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNA 174
Query: 475 LMDMHGRAK-NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533
++D R+K N+ E ++KEM +V+P+ +Y +I + A D+ + +++
Sbjct: 175 VLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK 234
Query: 534 GGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
G + + ++ + KL +I++ KLL+ M +G + + Y+ +N L
Sbjct: 235 GCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGL 285
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/522 (21%), Positives = 225/522 (43%), Gaps = 52/522 (9%)
Query: 98 ELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157
ELA+ Y E + TL +++ L + K + + + + V PD T +
Sbjct: 217 ELAWGVYQEISR-SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNT 275
Query: 158 LVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216
L+++ + A L+ G + +N+ + G K Y V+ +M +G
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 217 IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL--DSTPFSTHMYKILCDSLGKSGR 274
+ DS Y ++ K GD + +F + +SR + D FS+ M +SG
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMM-----SLFTRSGN 390
Query: 275 AFEALKFFRDMKEKGILEDPSIYASLI-----------------------CSFASITEVK 311
+AL +F +KE G++ D IY LI C+ +T
Sbjct: 391 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNT 450
Query: 312 L------------AEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359
+ A++LF E E+ + D L+ + + G ++ +++ + MK +
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR 510
Query: 360 LKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAE 419
+++ +++GF K A +++ ++S+ +P ++Y+ ++NA C ++A
Sbjct: 511 IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF 570
Query: 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMH 479
+V+ EM K V+ +SM+ Y ++G D + KM ++G P+ YN+L+
Sbjct: 571 RVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGF 630
Query: 480 GRAKNLRQVEKLWKEMERRK--VTPDKVSYTTVISAY---NRAREFDMCVKFYNEFRMNG 534
R +N+ + L K+ME + + PD +Y +++ + N+ +E ++ ++ E +N
Sbjct: 631 VREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNP 690
Query: 535 GVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERL 576
DR+ M+ F + E ++ +M G D++
Sbjct: 691 ---DRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 182/402 (45%), Gaps = 14/402 (3%)
Query: 118 STLKLLIRYLVQSKKWDSIVSLSEDFKI-----YNVLPDAHTCSRLVASCVRARKFKIAN 172
S LLIR VQ++K + E F + + V DA C+ L+ S VR ++A
Sbjct: 166 SVFDLLIRTYVQARK---LREAHEAFTLLRSKGFTVSIDA--CNALIGSLVRIGWVELAW 220
Query: 173 TLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231
+ Q G I + N + K +++ G+ D Y ++ AY
Sbjct: 221 GVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAY 280
Query: 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL 291
G E+ L + ++ Y + + L K G+ A + F +M G+
Sbjct: 281 SSKGLMEEAFELMNAMPGKGFSPGVYT---YNTVINGLCKHGKYERAKEVFAEMLRSGLS 337
Query: 292 EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351
D + Y SL+ +V E++F + + ++ D ++ ++ G ++K L
Sbjct: 338 PDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMY 397
Query: 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411
S+K A L + I ++ G+ ++ A+ + +++ QGC VTY +I++ C+
Sbjct: 398 FNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCK 457
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471
+ +A+K+F EM ++ + ++ + K G +++AM L KMK K +V
Sbjct: 458 RKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVT 517
Query: 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISA 513
YN+L+D G+ ++ +++W +M +++ P +SY+ +++A
Sbjct: 518 YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNA 559
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 133/292 (45%)
Query: 293 DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVV 352
+ S++ LI ++ +++ A E F KG + C L+ + G VE V
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223
Query: 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 412
+ + + + I+ +VN K Q+ +G P VTY ++I+AY
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283
Query: 413 ALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIY 472
L +A ++ M KGF V Y++++ K G+ A + A+M G P+ Y
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 473 NSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532
SL+ + ++ + EK++ +M R V PD V +++++S + R+ D + ++N +
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 533 NGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
G + D I I++ + + I + L +M +G +D Y++ ++ L
Sbjct: 404 AGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL 455
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 95/479 (19%), Positives = 189/479 (39%), Gaps = 55/479 (11%)
Query: 110 LPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFK 169
P F+ +L +I LV+S + L DA +C + + +
Sbjct: 106 FPNFKHTSLSLSAMIHILVRSGR----------------LSDAQSCLLRMIRRSGVSRLE 149
Query: 170 IANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229
I N+L F G + F+ + Y + + ++S G + ++
Sbjct: 150 IVNSLDSTFSNCGSNDSV-FDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIG 208
Query: 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG 289
+ +IG E ++ E SR + + I+ ++L K G+ + F ++EKG
Sbjct: 209 SLVRIGWVELAWGVYQEI-SRS--GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKG 265
Query: 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349
+ D Y +LI +++S +GL+E+
Sbjct: 266 VYPDIVTYNTLISAYSS-----------------------------------KGLMEEAF 290
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
+++ +M ++NG K Y A +V+ +++ G P TY S++
Sbjct: 291 ELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 350
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
C+ + EKVF +M+ + +V +SSM++++ ++G + A+ +K G P+
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410
Query: 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529
IY L+ + R + L EM ++ D V+Y T++ + + K +NE
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
Query: 530 FRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
D I++ KL ++ ++L Q MK + +LD Y++ ++ G
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVG 529
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/190 (18%), Positives = 78/190 (41%), Gaps = 17/190 (8%)
Query: 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK-----------------GCEPNVWIY 472
F ++ S+M+ + ++GR+ DA + +M + C N ++
Sbjct: 109 FKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVF 168
Query: 473 NSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532
+ L+ + +A+ LR+ + + + + T + +I + R ++ Y E
Sbjct: 169 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228
Query: 533 NGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQ 592
+G I+ IMV K ++E++ L ++ +G D Y++ ++A GL +
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288
Query: 593 AQWLQQNFEG 602
A L G
Sbjct: 289 AFELMNAMPG 298
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 108/484 (22%), Positives = 194/484 (40%), Gaps = 47/484 (9%)
Query: 107 AKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR 166
++K+P P T ++++ + DS +SL D + +P++ L+ S +
Sbjct: 210 SRKIP---PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCN 266
Query: 167 KFKIANTLLQ-VFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYC 225
+ A LL+ +F+ FN + G K + +M G D Y
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326
Query: 226 QIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDM 285
+M KIG + LF ++ ++ L GR +A DM
Sbjct: 327 YLMNGLCKIGRVDAAKDLFYRIPKPEI-------VIFNTLIHGFVTHGRLDDAKAVLSDM 379
Query: 286 -KEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGL 344
GI+ D Y SLI Y +EGL
Sbjct: 380 VTSYGIVPDVCTYNSLIYG-----------------------------------YWKEGL 404
Query: 345 VEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYAS 404
V L+V+ M+N K + +V+GF K A V ++ + G P V +
Sbjct: 405 VGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNC 464
Query: 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464
+I+A+C+ +A ++F EM +KG V ++S+++ + I+ A+WL+ M ++G
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524
Query: 465 CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCV 524
N YN+L++ R +++ KL EM + D+++Y ++I RA E D
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584
Query: 525 KFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
+ + +G I++ + +EE V+ ++M G+ D ++S +N L
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644
Query: 585 RDAG 588
AG
Sbjct: 645 CRAG 648
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 147/334 (44%), Gaps = 9/334 (2%)
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
L K R EA K M +G D Y L+ I V A++LF +
Sbjct: 296 GLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----- 350
Query: 328 DPEVCL--KLVLMYIEEGLVEKTLDVVESMKNAKLKISD-CISCAIVNGFSKRRGYWAAV 384
PE+ + L+ ++ G ++ V+ M + + D C +++ G+ K A+
Sbjct: 351 -PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLAL 409
Query: 385 KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 444
+V + ++GC P +Y +++ +C++ +A V EM G V ++ +++ +
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469
Query: 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504
K RI +A+ + +M KGC+P+V+ +NSL+ ++ L ++M V +
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANT 529
Query: 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564
V+Y T+I+A+ R E K NE G +D ++ + ++++ L +
Sbjct: 530 VTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEK 589
Query: 565 MKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598
M +G + +N L +G+ +A Q+
Sbjct: 590 MLRDGHAPSNISCNILINGLCRSGMVEEAVEFQK 623
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/446 (22%), Positives = 176/446 (39%), Gaps = 71/446 (15%)
Query: 211 KMKSAGIVLDSGCYCQIMEAYYKI-----------------------------------G 235
+MK GIV + IM Y K G
Sbjct: 136 QMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG 195
Query: 236 DSEKVAA-LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP 294
+ KVAA +F + SRK+ T F+ + ++ + AL RDM + G + +
Sbjct: 196 NCHKVAANVFYDMLSRKIPPTLFT---FGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNS 252
Query: 295 SIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVES 354
IY +LI S + V A +L +E G + D E ++L + + + +V
Sbjct: 253 VIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNR 312
Query: 355 MKNAKLKISDCISCAIVNGFSKRRGYWAA-----------VKVYEQLI------------ 391
M D ++NG K AA + ++ LI
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDA 372
Query: 392 ---------SQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442
S G +P TY S+I Y + L A +V +M+ KG V +Y+ +V
Sbjct: 373 KAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVD 432
Query: 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502
+ K G+I +A ++ +M A G +PN +N L+ + + + ++++EM R+ P
Sbjct: 433 GFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKP 492
Query: 503 DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLL 562
D ++ ++IS E + + G V + ++ F + +I+E KL+
Sbjct: 493 DVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLV 552
Query: 563 QDMKSEGTKLDERLYHSAMNALRDAG 588
+M +G+ LDE Y+S + L AG
Sbjct: 553 NEMVFQGSPLDEITYNSLIKGLCRAG 578
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 111/521 (21%), Positives = 213/521 (40%), Gaps = 39/521 (7%)
Query: 1 MAMAISSSSDCSSALINTTYTCMKKSYRHTLFSTCKAFPFVTVNPSSIINHRFFQVNAST 60
+ + I S +C N Y + + TLF+ ++ F VN
Sbjct: 187 VVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTF------------GVVMKAFCAVNEID 234
Query: 61 NFPTIELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPE------FR 114
+ + L RD VP++ + + +H + K + NEA +L E
Sbjct: 235 S--ALSLLRDMTKHGCVPNSVIYQTLIHSLSK--------CNRVNEALQLLEEMFLMGCV 284
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P+ T +I L + + + + I PD T L+ + + A L
Sbjct: 285 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344
Query: 175 LQVFITDGEIALLAFNSAMGGY-NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233
I EI + FN+ + G+ + + ++ + + S GIV D Y ++ Y+K
Sbjct: 345 FYR-IPKPEIVI--FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 401
Query: 234 IGDSEKVAALFLEC--KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL 291
E + L LE R P + + Y IL D K G+ EA +M G+
Sbjct: 402 ----EGLVGLALEVLHDMRNKGCKP-NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLK 456
Query: 292 EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351
+ + LI +F + A E+F+E KG D L+ E ++ L +
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL 516
Query: 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411
+ M + + + ++N F +R A K+ +++ QG ++TY S+I CR
Sbjct: 517 LRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCR 576
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471
KA +F +M + G ++ + ++ ++G + +A+ +M +G P++
Sbjct: 577 AGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT 636
Query: 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512
+NSL++ RA + ++++++ + PD V++ T++S
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMS 677
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/355 (20%), Positives = 148/355 (41%), Gaps = 49/355 (13%)
Query: 258 STHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLI---------------- 301
S +Y++L LG +G + MK++GI+ S++ S++
Sbjct: 110 SFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLM 169
Query: 302 --------C-----SFASITEV-------KLAEELFKEAEEKGMLRDPEVCLKLVLM--Y 339
C S+ + E+ K+A +F + + + P + V+M +
Sbjct: 170 LEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKI--PPTLFTFGVVMKAF 227
Query: 340 IEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ 399
++ L ++ M + I +++ SK A+++ E++ GC+P
Sbjct: 228 CAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDA 287
Query: 400 VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK 459
T+ +I C+ ++A K+ M +GF + Y ++ K GR+ A L +
Sbjct: 288 ETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYR 347
Query: 460 MKAKGCEPNVWIYNSLMD---MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516
+ +P + I+N+L+ HGR + + V L + + PD +Y ++I Y +
Sbjct: 348 IP----KPEIVIFNTLIHGFVTHGRLDDAKAV--LSDMVTSYGIVPDVCTYNSLIYGYWK 401
Query: 517 AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTK 571
+ ++ ++ R G + I+V F KL +I+E +L +M ++G K
Sbjct: 402 EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLK 456
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/194 (17%), Positives = 70/194 (36%), Gaps = 36/194 (18%)
Query: 427 QKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG---------------------- 464
Q G+ Y ++ G G + L+ +MK +G
Sbjct: 104 QNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPG 163
Query: 465 --------------CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTV 510
CEP YN ++++ + ++ +M RK+ P ++ V
Sbjct: 164 QTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVV 223
Query: 511 ISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT 570
+ A+ E D + + +G V + I ++ SK +++ E ++LL++M G
Sbjct: 224 MKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283
Query: 571 KLDERLYHSAMNAL 584
D ++ + L
Sbjct: 284 VPDAETFNDVILGL 297
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 184/417 (44%), Gaps = 10/417 (2%)
Query: 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRA----RKFKIANTLLQV 177
+LI L + K+ + L ++ +LP T + L+ +A + FK+ +
Sbjct: 219 VLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD 278
Query: 178 FITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237
I E +L+ FN+ + G K M V ++MK G V D+ + + + Y +
Sbjct: 279 HI---EPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGY---SSN 332
Query: 238 EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297
EK A ++ + + IL ++L K G+ +A + KG++ + IY
Sbjct: 333 EKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIY 392
Query: 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357
++I + ++ A + E++GM D L+ + E G +E V MK
Sbjct: 393 NTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKL 452
Query: 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417
+ S ++ G+ ++ + + +++ G +P V+Y ++IN C+ + +
Sbjct: 453 KGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLE 512
Query: 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477
A+ V +M+ +G V Y+ ++ G+I DA +M KG E N+ YN+L+D
Sbjct: 513 AQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLID 572
Query: 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534
L + E L E+ R+ + PD +Y ++IS Y A C+ Y E + +G
Sbjct: 573 GLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSG 629
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/483 (20%), Positives = 206/483 (42%), Gaps = 20/483 (4%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVS-----LSEDFKIYNVLPDAHTCSRLVASCVR----A 165
P +L LL+ +LV++K++ ++ L DF+ P + + + V+
Sbjct: 142 PSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFR-----PSKFMYGKAIQAAVKLSDVG 196
Query: 166 RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYC 225
+ ++ N + I ++ +N + G K ++++M + ++ Y
Sbjct: 197 KGLELFNRMKHDRIYP---SVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYN 253
Query: 226 QIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDM 285
+++ Y K G+ EK F + K D S + L L K+G +A ++M
Sbjct: 254 TLIDGYCKAGNPEKS---FKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310
Query: 286 KEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLV 345
K+ G + D ++ L ++S + + A +++ A + G+ + C L+ +EG +
Sbjct: 311 KDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKI 370
Query: 346 EKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI 405
EK +++ L ++ I +++G+ ++ A E + QG P + Y +
Sbjct: 371 EKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCL 430
Query: 406 INAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC 465
I +C + AEK +M+ KG V Y+ ++ YG+ ++ +M+ G
Sbjct: 431 IRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGT 490
Query: 466 EPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVK 525
PNV Y +L++ + L + + + ++ME R V+P Y +I + + +
Sbjct: 491 MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFR 550
Query: 526 FYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALR 585
F E G ++ ++ S ++ E LL ++ +G K D Y+S ++
Sbjct: 551 FSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYG 610
Query: 586 DAG 588
AG
Sbjct: 611 FAG 613
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 164/382 (42%), Gaps = 46/382 (12%)
Query: 224 YCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFR 283
Y + ++A K+ D K LF K ++ + F +Y +L D L K R +A + F
Sbjct: 182 YGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVF---IYNVLIDGLCKGKRMNDAEQLFD 238
Query: 284 DMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE-KGMLRDPEVCLKLVLM--YI 340
+M + +L Y +LI + E+ FK E K +P + L+
Sbjct: 239 EMLARRLLPSLITYNTLIDGYCKAGN---PEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 341 EEGLVEKTLDVVESMKNAKLKISDCISCAIV-NGFSKRRGYWAAVKVYEQLISQGCIPGQ 399
+ G+VE +V++ MK+ + D + +I+ +G+S AA+ VYE + G
Sbjct: 296 KAGMVEDAENVLKEMKDLGF-VPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNA 354
Query: 400 VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK 459
T + ++NA C K G+I A ++ +
Sbjct: 355 YTCSILLNALC-----------------------------------KEGKIEKAEEILGR 379
Query: 460 MKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRARE 519
AKG PN IYN+++D + R +L + ME++ + PD ++Y +I + E
Sbjct: 380 EMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGE 439
Query: 520 FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHS 579
+ K N+ ++ G I++G + + + ++ +L++M+ GT + Y +
Sbjct: 440 MENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGT 499
Query: 580 AMNALRDAGLQMQAQWLQQNFE 601
+N L ++AQ ++++ E
Sbjct: 500 LINCLCKGSKLLEAQIVKRDME 521
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 160/357 (44%), Gaps = 21/357 (5%)
Query: 188 AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247
+N +GGY + + + + ++M+ G + + Y ++ K S+ + A ++
Sbjct: 461 TYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCK--GSKLLEAQIVKR 518
Query: 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASI 307
+P +Y +L D G+ +A +F ++M +KGI + Y +LI +
Sbjct: 519 DMEDRGVSP-KVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMT 577
Query: 308 TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS 367
++ AE+L E KG+ D L+ Y G V++ + + E MK + +K +
Sbjct: 578 GKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTY 637
Query: 368 CAIVNGFSKRRGYWAAVKVYEQLISQGCI-PGQVTYASIINAYCRIALYSKAEKVFIEMQ 426
+++ +K +++ E+L + + P + Y +++ Y A++ EK F +Q
Sbjct: 638 HLLISLCTKE-----GIELTERLFGEMSLKPDLLVYNGVLHCY---AVHGDMEKAF-NLQ 688
Query: 427 QKGFDKCV----VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA 482
++ +K + Y+S++ K G++ + L+ +M A+ EP YN ++ H
Sbjct: 689 KQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEV 748
Query: 483 KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYN---RAREFDMCVKFYNEFRMNGGV 536
K+ ++EM+ + D ++S R++E ++ + N RM G V
Sbjct: 749 KDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNG-RMLGDV 804
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 109/256 (42%)
Query: 333 LKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392
L L ++ E ++ + D+ +++N + S +++ K + + + V+ ++
Sbjct: 113 LLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 172
Query: 393 QGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD 452
P + Y I A +++ K ++F M+ V Y+ ++ K R+ D
Sbjct: 173 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND 232
Query: 453 AMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512
A L +M A+ P++ YN+L+D + +A N + K+ + M+ + P +++ T++
Sbjct: 233 AEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLK 292
Query: 513 AYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKL 572
+A + E + G V D I+ +S + E + + + G K+
Sbjct: 293 GLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKM 352
Query: 573 DERLYHSAMNALRDAG 588
+ +NAL G
Sbjct: 353 NAYTCSILLNALCKEG 368
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 114/540 (21%), Positives = 228/540 (42%), Gaps = 49/540 (9%)
Query: 100 AYDYYNEAKKLPEFRPEKSTLKL--LIRYLVQSKKWDSIVSLSE---------DFKIYNV 148
A D + E + + RP S ++ L+ + + K+D ++SL E D YN+
Sbjct: 64 AVDLFGE---MVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 149 L--------------------------PDAHTCSRLVASCVRARKFKIANTLL-QVFITD 181
L PD T S L+ ++ A L+ Q+F+ +
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA 241
+ + FN+ + G + + + ++M + G D Y ++ K GD +
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 242 ALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLI 301
+L + + K+++ +Y + D+L +AL F +M KGI + Y SLI
Sbjct: 241 SLLKKMEKGKIEA---DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297
Query: 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCL--KLVLMYIEEGLVEKTLDVVESMKNAK 359
+ A L + E+ + +P V L+ +++EG + + + + M
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKI--NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 355
Query: 360 LKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAE 419
+ +++NGF A ++E +IS+ C P VTY ++I +C+ +
Sbjct: 356 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415
Query: 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMH 479
++F EM Q+G V Y++++ + G A + KM + G P++ Y+ L+D
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475
Query: 480 GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDR 539
+ L + +++ +++ K+ PD +Y +I +A + + + + G +
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535
Query: 540 AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA-LRDAGLQMQAQWLQQ 598
I M+ F + EE L ++MK +GT + Y++ + A LRD A+ +++
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKE 595
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/440 (20%), Positives = 184/440 (41%), Gaps = 6/440 (1%)
Query: 112 EFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171
E++P T LI L K V+L + PD T +V + +A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 172 NTLLQVFITDGEIA--LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229
+LL+ + G+I ++ + + + + ++ +M + GI + Y ++
Sbjct: 240 LSLLKK-MEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298
Query: 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG 289
G + L + RK++ + + L D+ K G+ EA K + +M ++
Sbjct: 299 CLCNYGRWSDASRLLSDMIERKINPNVVT---FSALIDAFVKEGKLVEAEKLYDEMIKRS 355
Query: 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349
I D Y+SLI F + A+ +F+ K + L+ + + VE+ +
Sbjct: 356 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
++ M L + ++ G + A K++++++S G P +TY+ +++
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
C+ KA VF +Q+ + + Y+ M+ K G++ D L + KG +PNV
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535
Query: 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529
IY +++ R + + L++EM+ P+ +Y T+I A R + + E
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKE 595
Query: 530 FRMNGGVIDRAIAGIMVGVF 549
R G V D + +++ +
Sbjct: 596 MRSCGFVGDASTISMVINML 615
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 19/278 (6%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFR------PEKSTLKLLIRYLVQSK 131
PD + S ++G +D +EAK + E P T LI+ ++K
Sbjct: 358 PDIFTYSSLINGFC--------MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409
Query: 132 KWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFN 190
+ + + L + ++ + T + L+ +A +A + + ++DG ++ ++
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469
Query: 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250
+ G K ++V+E ++ + + D Y ++E K G E LF S
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC---SL 526
Query: 251 KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310
L + +Y + + G EA FR+MKE G L + Y +LI + +
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDK 586
Query: 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKT 348
+ EL KE G + D + +V+ + +G +EK+
Sbjct: 587 AASAELIKEMRSCGFVGDAST-ISMVINMLHDGRLEKS 623
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 114/538 (21%), Positives = 224/538 (41%), Gaps = 45/538 (8%)
Query: 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159
A D + E K F P L+ + + KK+D ++S E +I V + +T + ++
Sbjct: 49 AVDLFGEMVKSRPF-PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMI 107
Query: 160 ASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGY---NKL-----------HMYYS 204
R + A +L + G +++ NS + G+ N++ M Y
Sbjct: 108 NCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQ 167
Query: 205 ------TILVY---------------EKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243
T LV+ E+M G D Y ++ K G+ + L
Sbjct: 168 PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNL 227
Query: 244 FLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICS 303
+ + K+++ +Y + DSL K +AL F +M KGI D Y+SLI
Sbjct: 228 LNKMEKGKIEA---DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 304 FASITEVKLAEELFKEAEEKGMLRDPEVCL--KLVLMYIEEGLVEKTLDVVESMKNAKLK 361
+ A L + E+ + +P V L+ + +EG + + + + M +
Sbjct: 285 LCNYGRWSDASRLLSDMLERKI--NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342
Query: 362 ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKV 421
+ +++NGF A +++ ++S+ C+P VTY ++IN +C+ ++
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 422 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481
F +M ++G V Y++++ + + +A + +M + G PN+ YN+L+D +
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462
Query: 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAI 541
L + +++ +++ K+ PD +Y + +A + + + + G D
Sbjct: 463 NGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIA 522
Query: 542 AGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA-LRDAGLQMQAQWLQQ 598
M+ F K EE L MK +G D Y++ + A LRD A+ +++
Sbjct: 523 YNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKE 580
Score = 39.3 bits (90), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 11/190 (5%)
Query: 65 IELNRDSHHQTAVPDAKKFDSFLHGMLK--DPQTQELAYDYYNEAKKLPE--FRPEKSTL 120
+EL RD + V + + + +HG + D ++ + K++ P T
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF------KQMVSDGVHPNIMTY 453
Query: 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT 180
L+ L ++ K + + + E + + PD +T + + +A K + L
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 181 DG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239
G + ++A+N+ + G+ K + ++ KMK G + DSG Y ++ A+ + GD
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 573
Query: 240 VAALFLECKS 249
A L E +S
Sbjct: 574 SAELIKEMRS 583
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 72/178 (40%), Gaps = 1/178 (0%)
Query: 407 NAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE 466
NA + L +A +F EM + +V +S +++ K + + KM+ G
Sbjct: 39 NALLHLKL-DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVS 97
Query: 467 PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKF 526
N++ YN +++ R L + +M + P V+ ++++ + V
Sbjct: 98 HNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVAL 157
Query: 527 YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
++ G D +V + ++ E V L++ M +G + D Y + +N L
Sbjct: 158 VDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGL 215
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 121/540 (22%), Positives = 226/540 (41%), Gaps = 65/540 (12%)
Query: 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSED 142
+ +HG+ + E A D + + K E P T +LI+ L S++ ++L ++
Sbjct: 291 YTHLIHGLCVARRIDE-AMDLFVKMKD-DECFPTVRTYTVLIKSLCGSERKSEALNLVKE 348
Query: 143 FKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAFNSAMGGYNKLHM 201
+ + P+ HT + L+ S KF+ A LL + G + ++ +N+ + GY K M
Sbjct: 349 MEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGM 408
Query: 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHM 261
+ V E M+S + ++ Y ++++ Y K + K + + RK+ +
Sbjct: 409 IEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVT--- 464
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
Y L D +SG A + M ++G++ D Y S+I S V+ A +LF E
Sbjct: 465 YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE 524
Query: 322 EKGMLRDPEVCLKLVLM--YIEEGLVEKTLDVVESM------------------------ 355
+KG+ +P V + L+ Y + G V++ ++E M
Sbjct: 525 QKGV--NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582
Query: 356 ---------KNAKLKISDCIS--CAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYAS 404
K K+ + +S +++ K + A ++Q++S G P TY +
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642
Query: 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464
I YCR AE + +M++ G + YSS++ YG G+ A ++ +M+ G
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
Query: 465 CEPNVWIYNSLMDM-----HGRAKN-------------LRQVEKLWKEMERRKVTPDKVS 506
CEP+ + SL+ +G+ K V +L ++M VTP+ S
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKS 762
Query: 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIA-GIMVGVFSKLSQIEELVKLLQDM 565
Y +I + K ++ + N G+ + ++ KL + E K++ DM
Sbjct: 763 YEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDM 822
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 112/494 (22%), Positives = 201/494 (40%), Gaps = 74/494 (14%)
Query: 167 KFKIANTLLQVFITDGE----IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSG 222
+F + + + QV++ E + +N + GY KL K+ AG+ D
Sbjct: 195 RFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFF 254
Query: 223 CYCQIMEAYYKIGDSEKVAALFLE--------------------CKSRKLDSTP------ 256
Y ++ Y + D + +F E C +R++D
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314
Query: 257 -----FST-HMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310
F T Y +L SL S R EAL ++M+E GI + Y LI S S +
Sbjct: 315 KDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKF 374
Query: 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI 370
+ A EL + EKG++ + L+ Y + G++E +DVVE M++ KL + +
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNEL 434
Query: 371 VNGFSK--------------RRGYWAAVKVYEQLI--------------------SQGCI 396
+ G+ K R V Y LI +G +
Sbjct: 435 IKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494
Query: 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWL 456
P Q TY S+I++ C+ +A +F ++QKG + VV Y++++ Y K G++ +A +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 457 VAKMKAKGCEPNVWIYNSLMDMHGRAKN--LRQVEKLWKEMERRKVTPDKVSYTTVISAY 514
+ KM +K C PN +N+L +HG + L++ L ++M + + P + T +I
Sbjct: 555 LEKMLSKNCLPNSLTFNAL--IHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRL 612
Query: 515 NRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE 574
+ +FD + + +G D + + + ++ + ++ M+ G D
Sbjct: 613 LKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL 672
Query: 575 RLYHSAMNALRDAG 588
Y S + D G
Sbjct: 673 FTYSSLIKGYGDLG 686
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/412 (19%), Positives = 176/412 (42%), Gaps = 39/412 (9%)
Query: 222 GCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281
GCY ++ + + G +++ +++E K+ ++ Y + + K G EA ++
Sbjct: 184 GCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYT---YNKMVNGYCKLGNVEEANQY 240
Query: 282 FRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD------------- 328
+ E G+ D Y SLI + ++ A ++F E KG R+
Sbjct: 241 VSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCV 300
Query: 329 --------------------PEVCLKLVLMYIEEGLVEKT--LDVVESMKNAKLKISDCI 366
P V VL+ G K+ L++V+ M+ +K +
Sbjct: 301 ARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHT 360
Query: 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQ 426
+++ + + A ++ Q++ +G +P +TY ++IN YC+ + A V M+
Sbjct: 361 YTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME 420
Query: 427 QKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLR 486
+ Y+ ++ Y K+ + AM ++ KM + P+V YNSL+D R+ N
Sbjct: 421 SRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFD 479
Query: 487 QVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMV 546
+L M R + PD+ +YT++I + +++ + ++ G + + ++
Sbjct: 480 SAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALI 539
Query: 547 GVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598
+ K +++E +L+ M S+ + +++ ++ L G +A L++
Sbjct: 540 DGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEE 591
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 37/250 (14%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK------ 131
PD + S + G QT A+D + P + T LI++L++ K
Sbjct: 670 PDLFTYSSLIKGYGDLGQTN-FAFDVLKRMRD-TGCEPSQHTFLSLIKHLLEMKYGKQKG 727
Query: 132 ------------KWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179
++D++V L E ++V P+A + +L+ ++A +
Sbjct: 728 SEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787
Query: 180 TDGEIAL--LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV--LDSGCYCQIME-AYYKI 234
+ I+ L FN+ + KL + V + M G + L+S C+++ YK
Sbjct: 788 RNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLES---CKVLICGLYKK 844
Query: 235 GDSEKVAALF---LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL 291
G+ E+ ++F L+C + + +KI+ D +GK G + F M++ G
Sbjct: 845 GEKERGTSVFQNLLQCGYYEDELA------WKIIIDGVGKQGLVEAFYELFNVMEKNGCK 898
Query: 292 EDPSIYASLI 301
Y+ LI
Sbjct: 899 FSSQTYSLLI 908
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/439 (22%), Positives = 188/439 (42%), Gaps = 6/439 (1%)
Query: 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIAN 172
++P+ T LI L K V+L + PD T +V + +A
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 173 TLLQVFITDGEIA--LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230
+LL+ + G+I ++ +N+ + G K + ++ +M + GI D Y ++
Sbjct: 244 SLLKK-MEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI 290
G + L + RK++ + + L D+ K G+ EA K + +M ++ I
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVT---FSALIDAFVKEGKLVEAEKLYDEMIKRSI 359
Query: 291 LEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLD 350
D Y+SLI F + A+ +F+ K + L+ + + VE+ ++
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGME 419
Query: 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410
+ M L + +++GF + R A V++Q++S G P +TY +++ C
Sbjct: 420 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLC 479
Query: 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVW 470
+ +KA VF +Q+ + + Y+ M+ K G++ D L + KG PNV
Sbjct: 480 KNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVI 539
Query: 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530
YN+++ R + + + L K+M+ P+ +Y T+I A R + + + E
Sbjct: 540 AYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599
Query: 531 RMNGGVIDRAIAGIMVGVF 549
R G D + G++ +
Sbjct: 600 RSCGFAGDASTIGLVTNML 618
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 103/488 (21%), Positives = 204/488 (41%), Gaps = 40/488 (8%)
Query: 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIAN 172
+ P+ TL L+ SK+ V+L + PD T + L+ K A
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 173 TLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231
L+ + G + L+ + + + G K + + +KM+ I D Y I++
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGL 268
Query: 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL 291
K + LF E ++ + F+ Y L L GR +A + DM E+ I
Sbjct: 269 CKYKHMDDALNLFTEMDNKGIRPDVFT---YSSLISCLCNYGRWSDASRLLSDMIERKIN 325
Query: 292 EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351
+ +++LI +F ++ AE+L+ E ++ + DP+ + Y
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPD-----IFTY------------ 366
Query: 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411
+++NGF A ++E +IS+ C P VTY+++I +C+
Sbjct: 367 ----------------SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCK 410
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471
+ ++F EM Q+G V Y++++ + + +A + +M + G PN+
Sbjct: 411 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470
Query: 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531
YN L+D + L + +++ ++R + PD +Y +I +A + + + +
Sbjct: 471 YNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLS 530
Query: 532 MNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA-LRDAGLQ 590
+ G + M+ F + EE LL+ MK +G + Y++ + A LRD +
Sbjct: 531 LKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDRE 590
Query: 591 MQAQWLQQ 598
A+ +++
Sbjct: 591 ASAELIKE 598
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/403 (20%), Positives = 185/403 (45%), Gaps = 9/403 (2%)
Query: 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALF 244
+++ FN + K++ + I + E+M++ GI D Y + + + S+ AL
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCR--RSQLSLALA 139
Query: 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304
+ K KL P + +L + S R +A+ M E G D + +LI
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLL-NGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGL 198
Query: 305 ASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD 364
+ A L + ++G D +V + G ++ L +++ M+ K++
Sbjct: 199 FLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 258
Query: 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
I I++G K + A+ ++ ++ ++G P TY+S+I+ C +S A ++ +
Sbjct: 259 VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSD 318
Query: 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD---MHGR 481
M ++ + VV +S+++ + K G++ +A L +M + +P+++ Y+SL++ MH R
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 378
Query: 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAI 541
L + + +++ M + P+ V+Y+T+I + +A+ + ++ + E G V +
Sbjct: 379 ---LDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT 435
Query: 542 AGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
++ F + + + + M S G + Y+ ++ L
Sbjct: 436 YTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 478
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 101/226 (44%)
Query: 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
+N F +R A+ V +++ G P VT +S++N YC S A + +M + G+
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490
+++++ + +A+ LV +M +GC+P++ Y ++++ + ++
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550
L K+ME+ K+ D V Y T+I + + D + + E G D ++
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304
Query: 551 KLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWL 596
+ + +LL DM + + + ++A G ++A+ L
Sbjct: 305 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 350
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 92/205 (44%), Gaps = 6/205 (2%)
Query: 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442
AV ++ ++ P V + +++A ++ + + +MQ G + YS +
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126
Query: 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502
+ + ++ A+ ++AKM G EP++ +SL++ + +K + L +M P
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 503 DKVSYTTVISA---YNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559
D ++TT+I +N+A E V ++ G D G +V K I+ +
Sbjct: 187 DTFTFTTLIHGLFLHNKASE---AVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 560 KLLQDMKSEGTKLDERLYHSAMNAL 584
LL+ M+ + D +Y++ ++ L
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGL 268
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/500 (21%), Positives = 211/500 (42%), Gaps = 45/500 (9%)
Query: 114 RPEKSTLKL--LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171
RP S + L+ + + KK+D ++SL E + + + +T + L+ R + +A
Sbjct: 80 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 139
Query: 172 NTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDS--------- 221
LL + G E +++ +S + GY + + ++M G D+
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199
Query: 222 --------------------GC------YCQIMEAYYKIGDSEKVAALFLECKSRKLDST 255
GC Y ++ K GD + L + ++ K+++
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEA- 258
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315
+ +Y + DSL K +AL F +M+ KG+ + Y+SLI + A
Sbjct: 259 --NVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASR 316
Query: 316 LFKEAEEKGMLRDPEVCL--KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNG 373
L + E+ + +P V L+ +++EG + + + + M + +++NG
Sbjct: 317 LLSDMIERKI--NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 374
Query: 374 FSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC 433
F A ++E +IS+ C P VTY ++IN +C+ + ++F EM Q+G
Sbjct: 375 FCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGN 434
Query: 434 VVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWK 493
V Y++++ + + +A + +M + G PN+ YN+L+D + L + +++
Sbjct: 435 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFE 494
Query: 494 EMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLS 553
++R K+ P +Y +I +A + + + + G D I M+ F +
Sbjct: 495 YLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKG 554
Query: 554 QIEELVKLLQDMKSEGTKLD 573
EE L + M+ +G D
Sbjct: 555 LKEEADALFRKMREDGPLPD 574
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/407 (20%), Positives = 185/407 (45%), Gaps = 9/407 (2%)
Query: 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALF 244
++ FN + K+ + I + EKM+ GI + Y ++ + + S+ AL
Sbjct: 84 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCR--RSQISLALA 141
Query: 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304
L K KL P + +L + R +A+ M E G D + +LI
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLL-NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 200
Query: 305 ASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD 364
+ A L ++G + +V + G ++ +++ M+ AK++ +
Sbjct: 201 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANV 260
Query: 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
I +++ K R A+ ++ ++ ++G P +TY+S+I+ C +S A ++ +
Sbjct: 261 VIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSD 320
Query: 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD---MHGR 481
M ++ + VV +++++ + K G++ +A L +M + +P+++ Y+SL++ MH R
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 380
Query: 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAI 541
L + + +++ M + P+ V+Y T+I+ + +A+ D V+ + E G V +
Sbjct: 381 ---LDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVT 437
Query: 542 AGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
++ F + + + + M S+G + Y++ ++ L G
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 92/205 (44%), Gaps = 6/205 (2%)
Query: 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442
A+ ++ ++ +P + +++A ++ + + +MQ+ G + Y+ ++
Sbjct: 69 AIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILIN 128
Query: 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502
+ + +I A+ L+ KM G EP++ +SL++ + K + L +M P
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 503 DKVSYTTVISA---YNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559
D +++TT+I +N+A E V + G + G++V K I+
Sbjct: 189 DTITFTTLIHGLFLHNKASE---AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 245
Query: 560 KLLQDMKSEGTKLDERLYHSAMNAL 584
LL M++ + + +Y + +++L
Sbjct: 246 NLLNKMEAAKIEANVVIYSTVIDSL 270
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 173/362 (47%), Gaps = 8/362 (2%)
Query: 242 ALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLI 301
LF E + R L ++ Y L S GK G AL + + M++ + D +Y++LI
Sbjct: 176 GLFDEMRQRALAPDRYT---YSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLI 232
Query: 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK 361
+ + A +F + G+ D ++ +Y + L + +++ M A +
Sbjct: 233 ELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVL 292
Query: 362 ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKV 421
+ +++ + + + A+ V+ ++ C T +I+ Y ++ + +A+++
Sbjct: 293 PNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRL 352
Query: 422 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481
F +++ + VV+Y++++ +YG+ +A+ L M+ K E NV YN+++ ++G+
Sbjct: 353 FWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 412
Query: 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAI 541
+ L +EM+ R + P+ ++Y+T+IS + +A + D + + R +G ID+ +
Sbjct: 413 TMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVL 472
Query: 542 AGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWL-QQNF 600
M+ + ++ + +LL ++K D +A+ L AG +A W+ +Q F
Sbjct: 473 YQTMIVAYERVGLMGHAKRLLHELKLP----DNIPRETAITILAKAGRTEEATWVFRQAF 528
Query: 601 EG 602
E
Sbjct: 529 ES 530
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 111/501 (22%), Positives = 224/501 (44%), Gaps = 45/501 (8%)
Query: 80 AKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE---KSTLKLLIRYLVQSKKWDSI 136
AK+FD HG+ + + + LA D Y + + F E S L L Q + D +
Sbjct: 168 AKQFD-IAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWL-----QKMEQDRV 221
Query: 137 VSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196
S D +Y+ L + SR + C ++ I + L + IT L+A+NS + Y
Sbjct: 222 ---SGDLVLYSNLIE---LSRRL--CDYSKAISIFSRLKRSGITPD---LVAYNSMINVY 270
Query: 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK--LDS 254
K ++ L+ ++M AG++ ++ Y ++ Y + + ++F E K LD
Sbjct: 271 GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDL 330
Query: 255 TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAE 314
T + I+ D G+ EA + F +++ I +P++ S+ +I V
Sbjct: 331 TTCN-----IMIDVYGQLDMVKEADRLFWSLRKMDI--EPNV-----VSYNTILRVYGEA 378
Query: 315 ELFKEA-------EEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS 367
ELF EA + K + ++ ++ +Y + EK ++V+ M++ ++ +
Sbjct: 379 ELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITY 438
Query: 368 CAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQ 427
I++ + K A ++++L S G QV Y ++I AY R+ L A+++ E++
Sbjct: 439 STIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKL 498
Query: 428 KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQ 487
+ + + + K GR +A W+ + G ++ ++ +++++ R +
Sbjct: 499 PD----NIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVN 554
Query: 488 VEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547
V +++++M PD V++AY + REF+ Y E + G V + M+
Sbjct: 555 VIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLS 614
Query: 548 VFSKLSQIEELVKLLQDMKSE 568
++S E + L Q ++S+
Sbjct: 615 LYSSKKDFEMVESLFQRLESD 635
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 87/181 (48%), Gaps = 8/181 (4%)
Query: 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWL 456
P Y ++ R + A +F EM+Q+ YS+++ +GK G A+
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 212
Query: 457 VAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516
+ KM+ ++ +Y++L+++ R + + ++ ++R +TPD V+Y ++I+ Y +
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGK 272
Query: 517 A---REFDMCVKFYNEFRMNGGVIDRAIA-GIMVGVFSKLSQIEELVKLLQDMKSEGTKL 572
A RE + +K NE GV+ ++ ++ V+ + + E + + +MK L
Sbjct: 273 AKLFREARLLIKEMNE----AGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCAL 328
Query: 573 D 573
D
Sbjct: 329 D 329
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 105/259 (40%), Gaps = 44/259 (16%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
+++K++S+G+ +D Y ++ AY ++G L E K D+ P T +
Sbjct: 457 LFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLP--DNIPRETAI-----T 509
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
L K+GR EA FR E G ++D S++ +I
Sbjct: 510 ILAKAGRTEEATWVFRQAFESGEVKDISVFGCMIN------------------------- 544
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVY 387
+Y ++V E M+ A + ++N + K+R + A VY
Sbjct: 545 ----------LYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY 594
Query: 388 EQLISQGCI-PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446
++ +GC+ P +V + +++ Y + E +F ++ + + A+Y +
Sbjct: 595 REMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYER 653
Query: 447 TGRIRDAMWLVAKMKAKGC 465
++ DA ++ +M+ +G
Sbjct: 654 ADKLNDASRVMNRMRERGI 672
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 62/130 (47%)
Query: 467 PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKF 526
P+V+ YN ++ RAK L+ EM +R + PD+ +Y+T+I+++ + FD + +
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 212
Query: 527 YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRD 586
+ + D + ++ + +L + + + +K G D Y+S +N
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGK 272
Query: 587 AGLQMQAQWL 596
A L +A+ L
Sbjct: 273 AKLFREARLL 282
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI 555
E K TP +Y V+ RA++FD+ ++E R DR ++ F K
Sbjct: 147 EEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMF 206
Query: 556 EELVKLLQDMKSEGTKLDERLY 577
+ + LQ M+ + D LY
Sbjct: 207 DSALSWLQKMEQDRVSGDLVLY 228
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/507 (22%), Positives = 216/507 (42%), Gaps = 12/507 (2%)
Query: 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159
A D + +++ P + L+ V++K+W + SL F+ V P+ T + L+
Sbjct: 97 ALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLI 156
Query: 160 ASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV 218
+ ++F+ A L +G + + ++++ + K + ++++M G+
Sbjct: 157 KMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVA 216
Query: 219 LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL-DSTPF-STHMYKILCDSLGKSGRAF 276
D CY +++ + K D + L+ R L DS+ + + + I+ L K GR
Sbjct: 217 PDVTCYNILIDGFLKEKDHKTAMELW----DRLLEDSSVYPNVKTHNIMISGLSKCGRVD 272
Query: 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336
+ LK + MK+ +D Y+SLI V AE +F E +E+ D ++
Sbjct: 273 DCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTML 332
Query: 337 LMYIEEGLVEKTLDVVESM--KNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQG 394
+ G ++++L++ M KN+ +S I ++ G + A ++ + ++G
Sbjct: 333 GGFCRCGKIKESLELWRIMEHKNSVNIVSYNI---LIKGLLENGKIDEATMIWRLMPAKG 389
Query: 395 CIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAM 454
+ TY I+ C +KA V E++ G V AY+S++ K R+ +A
Sbjct: 390 YAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEAS 449
Query: 455 WLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514
LV +M G E N + N+L+ R L + +EM + P VSY +I
Sbjct: 450 NLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGL 509
Query: 515 NRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE 574
+A +F F E NG D I++ + +I+ ++L G + D
Sbjct: 510 CKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDV 569
Query: 575 RLYHSAMNALRDAGLQMQAQWLQQNFE 601
+++ ++ L G A + N E
Sbjct: 570 MMHNILIHGLCSVGKLDDAMTVMANME 596
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/490 (19%), Positives = 189/490 (38%), Gaps = 68/490 (13%)
Query: 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIAN 172
F+P+ + +I L ++ K D + L ++ V PD + L+ ++ + K A
Sbjct: 180 FKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAM 239
Query: 173 TLLQVFITDGEI--ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230
L + D + + N + G +K + ++E+MK D Y ++
Sbjct: 240 ELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHG 299
Query: 231 YYKIGDSEKVAALFLECKSRK--LDSTPFSTHM--------------------------- 261
G+ +K ++F E RK +D ++T +
Sbjct: 300 LCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNI 359
Query: 262 --YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKE 319
Y IL L ++G+ EA +R M KG D + Y I V A + +E
Sbjct: 360 VSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQE 419
Query: 320 AEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRG 379
E G D ++ ++ +E+ ++V+ M ++++ + A++ G +
Sbjct: 420 VESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSR 479
Query: 380 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSS 439
A ++ GC P V+Y +I C+ + +A EM + G+ + YS
Sbjct: 480 LGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSI 539
Query: 440 M---------------------------------VAMYG--KTGRIRDAMWLVAKMKAKG 464
+ + ++G G++ DAM ++A M+ +
Sbjct: 540 LLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRN 599
Query: 465 CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCV 524
C N+ YN+LM+ + + + +W M + + PD +SY T++ R +
Sbjct: 600 CTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAM 659
Query: 525 KFYNEFRMNG 534
+F+++ R +G
Sbjct: 660 EFFDDARNHG 669
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 102/256 (39%), Gaps = 37/256 (14%)
Query: 370 IVNGFSKRRGYWAAVKVYEQLISQ------------------------------------ 393
I+ S+ R ++ E + SQ
Sbjct: 49 ILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIF 108
Query: 394 GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDA 453
GC P +Y +++NA+ + K E +F + G + Y+ ++ M K A
Sbjct: 109 GCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKA 168
Query: 454 MWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISA 513
+ M +G +P+V+ Y+++++ +A L +L+ EM R V PD Y +I
Sbjct: 169 RGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDG 228
Query: 514 YNRAREFDMCVKFYNEFRMNGGVIDRA-IAGIMVGVFSKLSQIEELVKLLQDMKSEGTKL 572
+ + ++ ++ ++ + V IM+ SK ++++ +K+ + MK +
Sbjct: 229 FLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREK 288
Query: 573 DERLYHSAMNALRDAG 588
D Y S ++ L DAG
Sbjct: 289 DLYTYSSLIHGLCDAG 304
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%)
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
Y IL L K+G+ EA F ++M E G D Y+ L+C ++ LA EL+ +
Sbjct: 502 YNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFL 561
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381
+ G+ D + L+ G ++ + V+ +M++ + ++ GF K
Sbjct: 562 QSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSN 621
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
A ++ + G P ++Y +I+ C S A + F + + G V ++ +V
Sbjct: 622 RATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILV 681
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 109/269 (40%), Gaps = 3/269 (1%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
V ++++S+G LD Y I++ K E+ + L E ++ ++H+ L
Sbjct: 416 VMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVE---LNSHVCNALIG 472
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
L + R EA F R+M + G Y LIC + A KE E G
Sbjct: 473 GLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKP 532
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVY 387
D + L+ + ++ L++ + L+ + +++G A+ V
Sbjct: 533 DLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVM 592
Query: 388 EQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 447
+ + C VTY +++ + ++ ++A ++ M + G +++Y++++
Sbjct: 593 ANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMC 652
Query: 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476
+ AM + G P V+ +N L+
Sbjct: 653 RGVSYAMEFFDDARNHGIFPTVYTWNILV 681
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 192/447 (42%), Gaps = 60/447 (13%)
Query: 188 AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247
A N+ + + KL M + V+ KMK GI Y +M V+A+F++
Sbjct: 189 AANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGL--------VSAMFVDS 240
Query: 248 KSR----------KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297
R K D ++T M K C K+G+ +A++ RDM+ +G D Y
Sbjct: 241 AERVFEVMESGRIKPDIVTYNT-MIKGYC----KAGQTQKAMEKLRDMETRGHEADKITY 295
Query: 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357
++I + + ++ L++E +EKG+ P ++ +EG + + V E+M
Sbjct: 296 MTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIR 355
Query: 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417
K + I +++G++K A+++ ++I +G P VTY+ ++N C+ +
Sbjct: 356 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 415
Query: 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477
A F + G + YSS++ GK GR+ +A L +M KGC + + YN+L+D
Sbjct: 416 ALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALID 475
Query: 478 MHGRAKNLRQVEKLWKEMERRKVTPDKV-SYTTVIS------------------------ 512
+ + + + L+K ME + V +YT ++S
Sbjct: 476 AFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGIT 535
Query: 513 ---AYNRAREFDMCV--------KFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561
A RA +C+ K +E G ++D A M+ K +I+E KL
Sbjct: 536 PTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKL 594
Query: 562 LQDMKSEGTKLDERLYHSAMNALRDAG 588
+ G ++ R+ +NALR G
Sbjct: 595 ADGITERGREVPGRIRTVMINALRKVG 621
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 155/387 (40%), Gaps = 47/387 (12%)
Query: 223 CYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFF 282
CY +++ D +++ + E K + P + L S GK G E L +
Sbjct: 154 CYVSLVDVLALAKDVDRIRFVSSEIKKFEF---PMTVSAANALIKSFGKLGMVEELLWVW 210
Query: 283 RDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCL--KLVLMYI 340
R MKE GI Y L+ S V AE +F E E G ++ P++ ++ Y
Sbjct: 211 RKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVF-EVMESGRIK-PDIVTYNTMIKGYC 268
Query: 341 EEGLVEKTLDVVESMKN---------------AKLKISDCISCA---------------- 369
+ G +K ++ + M+ A SD SC
Sbjct: 269 KAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPH 328
Query: 370 ----IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEM 425
++ G K V+E +I +G P Y +I+ Y + A ++ M
Sbjct: 329 AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRM 388
Query: 426 QQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485
+GF VV YS +V K GR+ +A+ + G N Y+SL+D G+A +
Sbjct: 389 IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRV 448
Query: 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAI---A 542
+ E+L++EM + T D Y +I A+ + R+ D + + G D+ +
Sbjct: 449 DEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGC-DQTVYTYT 507
Query: 543 GIMVGVFSKLSQIEELVKLLQDMKSEG 569
++ G+F K + EE +KL M +G
Sbjct: 508 ILLSGMF-KEHRNEEALKLWDMMIDKG 533
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 85/187 (45%)
Query: 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461
Y S+++ + V E+++ F V A ++++ +GK G + + +W+ KMK
Sbjct: 155 YVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMK 214
Query: 462 AKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFD 521
G EP ++ YN LM+ A + E++++ ME ++ PD V+Y T+I Y +A +
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 274
Query: 522 MCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581
++ + G D+ M+ S V L Q+M +G ++ + +
Sbjct: 275 KAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVI 334
Query: 582 NALRDAG 588
L G
Sbjct: 335 GGLCKEG 341
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 163/354 (46%), Gaps = 9/354 (2%)
Query: 224 YCQIMEAYYKIGDSEKVAALFLECKSR--KLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281
Y M+ + K D EK LF E R K D+ F+T + ++G A+++
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTT-----IISCARQNGVPKRAVEW 232
Query: 282 FRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341
F M G D A++I ++ V +A L+ A + D L+ +Y
Sbjct: 233 FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGV 292
Query: 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401
G + L++ E MK +K + I +++ + + W A +Y+ LI+ G P T
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 352
Query: 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461
YA+++ AY R A ++ EM++KG V+ Y+++++M + +A + MK
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMK 412
Query: 462 -AKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF 520
+ C+P+ W ++SL+ ++ + + + E +M P T+VI Y +A++
Sbjct: 413 NCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQV 472
Query: 521 DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE 574
D V+ +++ G D G ++ V ++ + EE+ KL+ ++ KL +
Sbjct: 473 DDVVRTFDQVLELGITPDDRFCGCLLNVMTQ-TPSEEIGKLIGCVEKAKPKLGQ 525
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 116/253 (45%), Gaps = 38/253 (15%)
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
+++E+MK ++ I ++ + F K + + K++++++ +G P T+ +II+
Sbjct: 164 NLLETMKPSREVILYNVTMKV---FRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCA 220
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG----------RIRDAMWLV-- 457
+ + +A + F +M G + V ++M+ YG+ G R R W +
Sbjct: 221 RQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA 280
Query: 458 -----------------------AKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKE 494
+MKA G +PN+ IYN L+D GRAK Q + ++K+
Sbjct: 281 VTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKD 340
Query: 495 MERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQ 554
+ TP+ +Y ++ AY RAR D + Y E + G + + ++ + +
Sbjct: 341 LITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRY 400
Query: 555 IEELVKLLQDMKS 567
++E ++ QDMK+
Sbjct: 401 VDEAFEIFQDMKN 413
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 117/263 (44%), Gaps = 8/263 (3%)
Query: 209 YEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK--LDSTPFSTHMYKILC 266
+EKM S G D+ +++AY + G+ + +L+ ++ K +D+ FST L
Sbjct: 233 FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFST-----LI 287
Query: 267 DSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML 326
G SG L + +MK G+ + IY LI S A+ ++K+ G
Sbjct: 288 RIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFT 347
Query: 327 RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKV 386
+ LV Y + L + MK L ++ + +++ + R A ++
Sbjct: 348 PNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEI 407
Query: 387 YEQLIS-QGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445
++ + + + C P T++S+I Y S+AE ++M++ GF+ + +S++ YG
Sbjct: 408 FQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYG 467
Query: 446 KTGRIRDAMWLVAKMKAKGCEPN 468
K ++ D + ++ G P+
Sbjct: 468 KAKQVDDVVRTFDQVLELGITPD 490
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 35/167 (20%)
Query: 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS---------------- 512
V +YN M + ++K+L + EKL+ EM R + PD ++TT+IS
Sbjct: 175 VILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFE 234
Query: 513 -------------------AYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLS 553
AY RA DM + Y+ R ID ++ ++
Sbjct: 235 KMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSG 294
Query: 554 QIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600
+ + + ++MK+ G K + +Y+ ++++ A QA+ + ++
Sbjct: 295 NYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDL 341
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 10/239 (4%)
Query: 98 ELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157
++A Y+ A+ ++R + T LIR S +D +++ E+ K V P+ +R
Sbjct: 262 DMALSLYDRART-EKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNR 320
Query: 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM-GGYNKLHMYYSTILVYEKMKSAG 216
L+ S RA++ A + + IT+G + +A+ Y + + +Y +MK G
Sbjct: 321 LIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKG 380
Query: 217 IVLDSGCYCQIMEAYYKIGDSEKVAALFLE---CKSRKLDSTPFSTHMYKILCDSLGKSG 273
+ L Y ++ ++ +F + C++ DS FS+ + C SG
Sbjct: 381 LSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYAC-----SG 435
Query: 274 RAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVC 332
R EA M+E G + S+I + +V F + E G+ D C
Sbjct: 436 RVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFC 494
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 109/503 (21%), Positives = 211/503 (41%), Gaps = 72/503 (14%)
Query: 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTIL 207
+P T + ++ + V+ A L ++DG + ++A S + G+ K + S ++
Sbjct: 301 VPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALV 360
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL-- 265
+++KM+ G +S + ++E + K G+ EK AL K L TP H++ I+
Sbjct: 361 LFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEK--ALEFYKKMEVLGLTPSVFHVHTIIQG 418
Query: 266 ---------------------------CDS----LGKSGRAFEALKFFRDMKEKGILEDP 294
C++ L K G+ EA + M+ +GI +
Sbjct: 419 WLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNV 478
Query: 295 SIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVES 354
Y +++ + LA +F EKG+ + L+ + L+VV
Sbjct: 479 VSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNH 538
Query: 355 MKNAKLKISD--------------------------------CISC----AIVNGFSKRR 378
M ++ ++++ C+SC +I++GF K
Sbjct: 539 MTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEG 598
Query: 379 GYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS 438
+AV YE++ G P +TY S++N C+ +A ++ EM+ KG + AY
Sbjct: 599 EMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYG 658
Query: 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498
+++ + K + A L +++ +G P+ IYNSL+ N+ L+K+M +
Sbjct: 659 ALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKD 718
Query: 499 KVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEEL 558
+ D +YTT+I + + + Y E + G V D I ++V SK Q ++
Sbjct: 719 GLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKV 778
Query: 559 VKLLQDMKSEGTKLDERLYHSAM 581
VK+ ++MK + +Y++ +
Sbjct: 779 VKMFEEMKKNNVTPNVLIYNAVI 801
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/474 (20%), Positives = 216/474 (45%), Gaps = 14/474 (2%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
P++ F + K+ + ++ A ++Y + + L P + +I+ ++ +K + +
Sbjct: 372 PNSVTFSVLIEWFRKNGEMEK-ALEFYKKMEVLG-LTPSVFHVHTIIQGWLKGQKHEEAL 429
Query: 138 SL-SEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGG 195
L E F+ L + C+ +++ + K A LL + G ++++N+ M G
Sbjct: 430 KLFDESFETG--LANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLG 487
Query: 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDST 255
+ + +V+ + G+ ++ Y +++ ++ D + + S ++
Sbjct: 488 HCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIE-- 545
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDM-KEKGILEDPSIYASLICSFASITEVKLAE 314
+ +Y+ + + L K G+ +A + +M +EK + Y S+I F E+ A
Sbjct: 546 -VNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAV 604
Query: 315 ELFKEAEEKGMLRDPEVCLKLVLM--YIEEGLVEKTLDVVESMKNAKLKISDCISCAIVN 372
++E G+ P V LM + +++ L++ + MKN +K+ A+++
Sbjct: 605 AAYEEMCGNGI--SPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALID 662
Query: 373 GFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432
GF KR +A ++ +L+ +G P Q Y S+I+ + + A ++ +M + G
Sbjct: 663 GFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRC 722
Query: 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLW 492
+ Y++++ K G + A L +M+A G P+ IY +++ + +V K++
Sbjct: 723 DLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMF 782
Query: 493 KEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMV 546
+EM++ VTP+ + Y VI+ + R D + ++E G + D A I+V
Sbjct: 783 EEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILV 836
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/448 (20%), Positives = 203/448 (45%), Gaps = 19/448 (4%)
Query: 150 PDAHTCSRLVASCVRARKFKIANTLLQ------VFITDGEIALLAFNSAMGGYNKLHMYY 203
PD+ S V +C + +AN+LL+ + + E + S + K
Sbjct: 266 PDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQE----TYTSVILASVKQGNMD 321
Query: 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYK 263
I + ++M S GI ++ ++ + K +++ V+AL L K K +P S +
Sbjct: 322 DAIRLKDEMLSDGISMNVVAATSLITGHCK--NNDLVSALVLFDKMEKEGPSPNSV-TFS 378
Query: 264 ILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYA--SLICSFASITEVKLAEELFKEAE 321
+L + K+G +AL+F++ M+ G+ PS++ ++I + + + A +LF E+
Sbjct: 379 VLIEWFRKNGEMEKALEFYKKMEVLGL--TPSVFHVHTIIQGWLKGQKHEEALKLFDESF 436
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381
E G L + VC ++ ++G ++ +++ M++ + + ++ G +++
Sbjct: 437 ETG-LANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMD 495
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
A V+ ++ +G P TY+ +I+ R A +V M + V Y +++
Sbjct: 496 LARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTII 555
Query: 442 AMYGKTGRIRDAMWLVAKM-KAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV 500
K G+ A L+A M + K + YNS++D + + ++EM +
Sbjct: 556 NGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGI 615
Query: 501 TPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVK 560
+P+ ++YT++++ + D ++ +E + G +D G ++ F K S +E
Sbjct: 616 SPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASA 675
Query: 561 LLQDMKSEGTKLDERLYHSAMNALRDAG 588
L ++ EG + +Y+S ++ R+ G
Sbjct: 676 LFSELLEEGLNPSQPIYNSLISGFRNLG 703
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 152/366 (41%), Gaps = 40/366 (10%)
Query: 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKL-HMYYSTIL 207
P+ +T S L+ C R + A ++ + E+ + + + + G K+ + L
Sbjct: 511 PNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKAREL 570
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
+ ++ + + Y I++ ++K G+ + A + E + + Y L +
Sbjct: 571 LANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVIT---YTSLMN 627
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
L K+ R +AL+ +MK KG+ D Y +LI F + ++ A LF E E+G
Sbjct: 628 GLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEG--- 684
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVY 387
L S I ++++GF AA+ +Y
Sbjct: 685 --------------------------------LNPSQPIYNSLISGFRNLGNMVAALDLY 712
Query: 388 EQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 447
++++ G TY ++I+ + A +++ EMQ G + Y+ +V K
Sbjct: 713 KKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKK 772
Query: 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY 507
G+ + + +MK PNV IYN+++ H R NL + +L EM + + PD ++
Sbjct: 773 GQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATF 832
Query: 508 TTVISA 513
++S
Sbjct: 833 DILVSG 838
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 165/371 (44%), Gaps = 7/371 (1%)
Query: 141 EDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKL 199
ED K + D +T + ++ + R K A L IT+G + ++ +N+ M K
Sbjct: 259 EDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKG 318
Query: 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFST 259
M I V+ +M G + Y ++ G ++ + +E R + +
Sbjct: 319 KMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGV-VEISKRYM-----TQ 372
Query: 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKE 319
+Y L +L K G EA + F DM + + Y S++ S + A E+ +
Sbjct: 373 GIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSK 432
Query: 320 AEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRG 379
EKG++ D + + + + D+ E MK ++ F +
Sbjct: 433 IHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGE 492
Query: 380 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSS 439
A+ ++E+L C P ++Y S+IN + +A F EMQ+KG + VV YS+
Sbjct: 493 VDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYST 552
Query: 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499
++ +GKT R+ A L +M KGC+PN+ YN L+D + + L+ +M+++
Sbjct: 553 LMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQG 612
Query: 500 VTPDKVSYTTV 510
+TPD ++YT +
Sbjct: 613 LTPDSITYTVL 623
Score = 99.4 bits (246), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/406 (21%), Positives = 178/406 (43%), Gaps = 46/406 (11%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
VY +++ G LD Y +++A K EK +F + K R ++ Y I+
Sbjct: 225 VYCEIRRGGHKLDIFAYNMLLDALAK---DEKACQVFEDMKKRHCRRDEYT---YTIMIR 278
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
++G+ G+ EA+ F +M +G+ + Y +L+ A V A ++F E G R
Sbjct: 279 TMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETG-CR 337
Query: 328 DPEVCLKLVL-MYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK---------- 376
E L+L + + EG + + VVE +K ++ I +V SK
Sbjct: 338 PNEYTYSLLLNLLVAEGQLVRLDGVVEI---SKRYMTQGIYSYLVRTLSKLGHVSEAHRL 394
Query: 377 ------------RRGYWA-------------AVKVYEQLISQGCIPGQVTYASIINAYCR 411
R Y + A+++ ++ +G + + Y ++ +A +
Sbjct: 395 FCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGK 454
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471
+ S +F +M++ G + Y+ ++A +G+ G + +A+ + +++ C+P++
Sbjct: 455 LKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIIS 514
Query: 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531
YNSL++ G+ ++ + +KEM+ + + PD V+Y+T++ + + +M + E
Sbjct: 515 YNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEML 574
Query: 532 MNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLY 577
+ G + I++ K + E V L MK +G D Y
Sbjct: 575 VKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITY 620
>sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790,
mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3
SV=1
Length = 799
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 161/386 (41%), Gaps = 46/386 (11%)
Query: 187 LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246
+ +N A +KL + ++MK GIV D Y +++ Y G L E
Sbjct: 389 VCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDE 448
Query: 247 CKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS 306
+ + Y +L L ++G E L+ + MK +G + + +I
Sbjct: 449 MIGNGMSPDLIT---YNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCF 505
Query: 307 ITEVKLAEELFKEAEEK---------------GM----------LRDP---EVCLKLVLM 338
+VK AE+ F E+K G+ L P V +KL
Sbjct: 506 ARKVKEAEDFFSSLEQKCPENKASFVKGYCEAGLSKKAYKAFVRLEYPLRKSVYIKLFFS 565
Query: 339 YIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398
EG +EK DV++ M +++ + ++ F K A +++ ++ +G IP
Sbjct: 566 LCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPD 625
Query: 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY-------------- 444
TY +I+ YCR+ KAE +F +M+Q+G VV Y+ ++ Y
Sbjct: 626 LFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPEHHETCSVQ 685
Query: 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504
G+ G+ R A ++ + A G +V Y L+D + NL Q +L+ M + PD
Sbjct: 686 GEVGK-RKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDM 744
Query: 505 VSYTTVISAYNRAREFDMCVKFYNEF 530
V+YTT+IS+Y R DM V E
Sbjct: 745 VAYTTLISSYFRKGYIDMAVTLVTEL 770
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 154/339 (45%), Gaps = 15/339 (4%)
Query: 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL 252
M + K+ M + +++++K G+ + Y +++A + G+ E+ A L +E +S
Sbjct: 191 MTEFGKIGMLMT---LFKQLKQLGLCANEYTYAIVVKALCRKGNLEEAAMLLIENES--- 244
Query: 253 DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASL---ICSFASITE 309
YK + L +G +A+ ++ ++ L + A L + F + +
Sbjct: 245 ------VFGYKTFINGLCVTGETEKAVALILELIDRKYLAGDDLRAVLGMVVRGFCNEMK 298
Query: 310 VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCA 369
+K AE + E EE G D CL ++ Y + + + L ++ M LK++ I
Sbjct: 299 MKAAESVIIEMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSL 358
Query: 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429
I+ + K A++ +++ +V Y +A ++ +A ++ EM+ +G
Sbjct: 359 ILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRG 418
Query: 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVE 489
V+ Y++++ Y G++ DA+ L+ +M G P++ YN L+ R + +V
Sbjct: 419 IVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVL 478
Query: 490 KLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYN 528
++++ M+ P+ V+ + +I AR+ F++
Sbjct: 479 EIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFS 517
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 121/291 (41%), Gaps = 7/291 (2%)
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
Y + D+L K GR EA + ++MK++GI+ D Y +LI + +V A +L E
Sbjct: 391 YNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMI 450
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381
GM D LV G E+ L++ E MK K + + I+ G R
Sbjct: 451 GNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVK 510
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
A + L Q C + AS + YC L KA K F+ ++ K V Y +
Sbjct: 511 EAEDFFSSL-EQKCPENK---ASFVKGYCEAGLSKKAYKAFVRLEYP-LRKSV--YIKLF 563
Query: 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501
G + A ++ KM A EP + ++ + N+R+ + L+ M R +
Sbjct: 564 FSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLI 623
Query: 502 PDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKL 552
PD +YT +I Y R E + + + G D +++ + KL
Sbjct: 624 PDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKL 674
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 38/239 (15%)
Query: 371 VNGFSKRRGYWAAVKVYEQLISQGCIPG---QVTYASIINAYCRIALYSKAEKVFIEMQQ 427
+NG AV + +LI + + G + ++ +C AE V IEM++
Sbjct: 252 INGLCVTGETEKAVALILELIDRKYLAGDDLRAVLGMVVRGFCNEMKMKAAESVIIEMEE 311
Query: 428 KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI---------------- 471
GF V A +++ Y K + +A+ + KM KG + N I
Sbjct: 312 IGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCKMDMCLE 371
Query: 472 -------------------YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512
YN D + + + +L +EM+ R + PD ++YTT+I
Sbjct: 372 ALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLID 431
Query: 513 AYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTK 571
Y + + +E NG D ++V ++ EE++++ + MK+EG K
Sbjct: 432 GYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPK 490
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336
EA F M E+G++ D Y +I ++ + E++ AE LF++ +++G+ P+V V
Sbjct: 609 EAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGI--KPDVVTYTV 666
Query: 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCI 396
L LD + KL +C++ KR+ A +V + + G
Sbjct: 667 L-----------LD-----RYLKLDPEHHETCSVQGEVGKRK----ASEVLREFSAAGIG 706
Query: 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWL 456
V Y +I+ C++ +A ++F M G + +VAY+++++ Y + G I A+ L
Sbjct: 707 LDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTL 766
Query: 457 VAKMKAK 463
V ++ K
Sbjct: 767 VTELSKK 773
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 147/357 (41%), Gaps = 68/357 (19%)
Query: 278 ALKFFRDMKEKGILEDPSIYASLICSFAS---------------------ITEVKLAEEL 316
AL F R +KE G+ + + YA+L+ + T + L E +
Sbjct: 73 ALSFLRQLKEHGVSPNVNAYATLVRILTTWGLDIKLDSVLVELIKNEERGFTVMDLIEVI 132
Query: 317 FKEAEEKG----MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCA-IV 371
++AEEK ++R V LV Y+ G+ ++ DV+ K + D +C ++
Sbjct: 133 GEQAEEKKRSFVLIR---VSGALVKAYVSLGMFDEATDVLFQSKRLDC-VVDIKACNFLM 188
Query: 372 NGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQ---- 427
N ++ + +++QL G + TYA ++ A CR +A + IE +
Sbjct: 189 NRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKGNLEEAAMLLIENESVFGY 248
Query: 428 KGF---------------------DKCVVAYSSMVAMYGKTGR-------IRDAMWLVAK 459
K F D+ +A + A+ G R ++ A ++ +
Sbjct: 249 KTFINGLCVTGETEKAVALILELIDRKYLAGDDLRAVLGMVVRGFCNEMKMKAAESVIIE 308
Query: 460 MKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRARE 519
M+ G +V+ +++D + + NL + +M + + + V + ++ Y +
Sbjct: 309 MEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCK--- 365
Query: 520 FDMCVKF---YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLD 573
DMC++ + EFR +DR + SKL ++EE +LLQ+MK G D
Sbjct: 366 MDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPD 422
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 111/525 (21%), Positives = 226/525 (43%), Gaps = 17/525 (3%)
Query: 77 VPDAKKFDSFLHGMLK--DPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWD 134
VP+ + + + G+ K D + E E +P T +I V+ +
Sbjct: 363 VPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNV----VTYSSMINGYVKKGMLE 418
Query: 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQ----VFITDGEIALLAFN 190
VSL + NV+P+ T ++ +A K ++A L + + + + L A
Sbjct: 419 EAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALV 478
Query: 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250
+ + ++ + + M S G+ LD Y +++ ++K GD E A E + R
Sbjct: 479 NHLKRIGRIKEVKGLV---KDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQER 535
Query: 251 KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310
+ P+ Y +L + K G+ A ++ M+EKGI D + + ++ S +
Sbjct: 536 GM---PWDVVSYNVLISGMLKFGKV-GADWAYKGMREKGIEPDIATFNIMMNSQRKQGDS 591
Query: 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI 370
+ +L+ + + G+ C +V M E G +E+ + ++ M ++ +
Sbjct: 592 EGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIF 651
Query: 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
++ SK + A K +E L+S G + Y ++I C++ + KA V +M+ +GF
Sbjct: 652 LDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGF 711
Query: 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490
V ++S++ Y +R A+ + M G PNV YN+++ A +++V+K
Sbjct: 712 IPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDK 771
Query: 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550
EM+ R + PD +Y +IS + + Y E +G V + +++ F+
Sbjct: 772 WLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFA 831
Query: 551 KLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQW 595
+ ++ + +LL++M G + Y + ++ L +W
Sbjct: 832 NVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTHPDVEW 876
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 107/469 (22%), Positives = 204/469 (43%), Gaps = 45/469 (9%)
Query: 153 HTCSRLVASCVRARKFKIANTLLQV----FITDGEIALLAFNSAMGGYNKLHMYYSTI-L 207
HT RL SC R + A TL + + D + +NS + +N + + + L
Sbjct: 64 HTLFRLYLSC--ERLYGAARTLSAMCTFGVVPDSRL----WNSLIHQFNVNGLVHDQVSL 117
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
+Y KM + G+ D ++ ++ K+G +L L + +D+ ++T +
Sbjct: 118 IYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISL-LRNRVISIDTVTYNT-----VIS 171
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
L + G A EA +F +M + GIL D Y +LI F + A+ L E E ++
Sbjct: 172 GLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLIT 231
Query: 328 --------------------------DPEVCL--KLVLMYIEEGLVEKTLDVVESMKNAK 359
DP+V ++ + G V + ++ M+
Sbjct: 232 HTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMS 291
Query: 360 LKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAE 419
+ + +V+ K Y A+ +Y Q++ +G V Y +++ + +AE
Sbjct: 292 VYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAE 351
Query: 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMH 479
K F + + VV Y+++V K G + A +++ +M K PNV Y+S+++ +
Sbjct: 352 KTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGY 411
Query: 480 GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDR 539
+ L + L ++ME + V P+ +Y TVI +A + +M ++ E R+ G +
Sbjct: 412 VKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENN 471
Query: 540 AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
I +V ++ +I+E+ L++DM S+G LD+ Y S ++ G
Sbjct: 472 YILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGG 520
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/430 (18%), Positives = 182/430 (42%), Gaps = 39/430 (9%)
Query: 207 LVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILC 266
L+ +M+ + + Y ++++ +K AL+ + R + P +Y +L
Sbjct: 282 LLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGI---PVDLVVYTVLM 338
Query: 267 DSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML 326
D L K+G EA K F+ + E + + Y +L+ ++ AE + + EK ++
Sbjct: 339 DGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVI 398
Query: 327 RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGF------------ 374
+ ++ Y+++G++E+ + ++ M++ + + +++G
Sbjct: 399 PNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIEL 458
Query: 375 ----------------------SKRRGYWAAVK-VYEQLISQGCIPGQVTYASIINAYCR 411
KR G VK + + ++S+G Q+ Y S+I+ + +
Sbjct: 459 SKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFK 518
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471
A EMQ++G VV+Y+ +++ K G++ A W M+ KG EP++
Sbjct: 519 GGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKV-GADWAYKGMREKGIEPDIAT 577
Query: 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531
+N +M+ + + + KLW +M+ + P +S V+ + + + N+
Sbjct: 578 FNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMM 637
Query: 532 MNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQM 591
+ + I + SK + + + K + + S G KL ++Y++ + L G+
Sbjct: 638 LMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTK 697
Query: 592 QAQWLQQNFE 601
+A + + E
Sbjct: 698 KAAMVMGDME 707
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/489 (20%), Positives = 198/489 (40%), Gaps = 46/489 (9%)
Query: 147 NVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAFNSAMGGYNKLHMYYST 205
N +P+ T + LV +A A ++ + I ++ ++S + GY K M
Sbjct: 361 NQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEA 420
Query: 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265
+ + KM+ +V + Y +++ +K G E L K +L + ++ L
Sbjct: 421 VSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIEL---SKEMRLIGVEENNYILDAL 477
Query: 266 CDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325
+ L + GR E +DM KG+ D Y SLI F + + A +E +E+GM
Sbjct: 478 VNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGM 537
Query: 326 LRD--------------------------------PEVCLKLVLMYIE--EGLVEKTLDV 351
D P++ ++M + +G E L +
Sbjct: 538 PWDVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKL 597
Query: 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWA-AVKVYEQLISQGCIPGQVTYASIINAYC 410
+ MK+ +K S +SC IV G G A+ + Q++ P TY ++
Sbjct: 598 WDKMKSCGIKPS-LMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSS 656
Query: 411 RIALYSKAEKVFIEMQ---QKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467
+ + +A+ +F + G Y++++A K G + A ++ M+A+G P
Sbjct: 657 K---HKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIP 713
Query: 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFY 527
+ +NSLM + ++R+ + M ++P+ +Y T+I + A K+
Sbjct: 714 DTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWL 773
Query: 528 NEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDA 587
+E + G D ++ +K+ ++ + + +M ++G Y+ ++ +
Sbjct: 774 SEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANV 833
Query: 588 GLQMQAQWL 596
G +QA+ L
Sbjct: 834 GKMLQAREL 842
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/313 (17%), Positives = 134/313 (42%), Gaps = 23/313 (7%)
Query: 299 SLICSFASITEVKLAEELFKEAEEKGMLRD---------------PEVCLKLVLMYIEEG 343
S +C+F + + +L L + G++ D P+V VL++
Sbjct: 84 SAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLIH-SFC 142
Query: 344 LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYA 403
V + + ++N + I +++G + A + +++ G +P V+Y
Sbjct: 143 KVGRLSFAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYN 202
Query: 404 SIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK 463
++I+ +C++ + +A+ + E+ + + SS ++ RD M
Sbjct: 203 TLIDGFCKVGNFVRAKALVDEISELNLITHTILLSSYYNLHAIEEAYRD-------MVMS 255
Query: 464 GCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMC 523
G +P+V ++S+++ + + + L +EME V P+ V+YTT++ + +A +
Sbjct: 256 GFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHA 315
Query: 524 VKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA 583
+ Y++ + G +D + +++ K + E K + + + + Y + ++
Sbjct: 316 LALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDG 375
Query: 584 LRDAGLQMQAQWL 596
L AG A+++
Sbjct: 376 LCKAGDLSSAEFI 388
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 102/475 (21%), Positives = 192/475 (40%), Gaps = 11/475 (2%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P T L I+ L Q + D V + PD T + L+ + KF+ A
Sbjct: 249 PNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY 308
Query: 175 LQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233
L + +G E +N+ + GY K M + G V D Y +++
Sbjct: 309 LGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCH 368
Query: 234 IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED 293
G++ + ALF E + + + +Y L L G EA + +M EKG++ +
Sbjct: 369 EGETNRALALFNEALGKGIKP---NVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPE 425
Query: 294 PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVE 353
+ L+ + V A+ L K KG D L+ Y + +E L++++
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILD 485
Query: 354 SMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA 413
M + + +++NG K + ++ Y+ ++ +GC P T+ ++ + CR
Sbjct: 486 VMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545
Query: 414 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK-AKGCEPNVWIY 472
+A + EM+ K + V + +++ + K G + A L KM+ A + Y
Sbjct: 546 KLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY 605
Query: 473 NSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532
N ++ N+ EKL++EM R + PD +Y ++ + + ++ KF E
Sbjct: 606 NIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME 665
Query: 533 NGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDA 587
NG + G ++ ++ E ++ M +G L A+N + D
Sbjct: 666 NGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKG------LVPEAVNTICDV 714
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/475 (18%), Positives = 199/475 (41%), Gaps = 4/475 (0%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P + ++ LV S +D + + + PD ++ + + S + + A L
Sbjct: 109 PTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRL 168
Query: 175 LQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233
L + G E+ ++A+ + +GG+ + + ++ KM ++G+ L + +++ K
Sbjct: 169 LNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCK 228
Query: 234 IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED 293
GD ++ L + R + F+ Y + L + G A++ + E+G D
Sbjct: 229 KGDVKECEKLLDKVIKRGVLPNLFT---YNLFIQGLCQRGELDGAVRMVGCLIEQGPKPD 285
Query: 294 PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVE 353
Y +LI ++ + AE + +G+ D L+ Y + G+V+ +V
Sbjct: 286 VITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVG 345
Query: 354 SMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA 413
++++G A+ ++ + + +G P + Y ++I
Sbjct: 346 DAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQG 405
Query: 414 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYN 473
+ +A ++ EM +KG V ++ +V K G + DA LV M +KG P+++ +N
Sbjct: 406 MILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFN 465
Query: 474 SLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533
L+ + + ++ M V PD +Y ++++ + +F+ ++ Y
Sbjct: 466 ILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK 525
Query: 534 GGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
G + I++ + +++E + LL++MK++ D + + ++ G
Sbjct: 526 GCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNG 580
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/377 (19%), Positives = 154/377 (40%), Gaps = 7/377 (1%)
Query: 222 GCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281
G Y M+ Y + G ++ +F + T FS Y + L SG +A K
Sbjct: 77 GVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFS---YNAIMSVLVDSGYFDQAHKV 133
Query: 282 FRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341
+ M+++GI D + + SF + A L +G + +V + E
Sbjct: 134 YMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYE 193
Query: 342 EGLVEKTLDVVESMKNAKLKISDCISC--AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ 399
E + ++ M + +S C+S ++ K+ K+ +++I +G +P
Sbjct: 194 ENFKAEGYELFGKMLASG--VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNL 251
Query: 400 VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK 459
TY I C+ A ++ + ++G V+ Y++++ K + ++A + K
Sbjct: 252 FTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGK 311
Query: 460 MKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRARE 519
M +G EP+ + YN+L+ + + ++ E++ + PD+ +Y ++I E
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGE 371
Query: 520 FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHS 579
+ + +NE G + + ++ S I E +L +M +G + + ++
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431
Query: 580 AMNALRDAGLQMQAQWL 596
+N L G A L
Sbjct: 432 LVNGLCKMGCVSDADGL 448
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 98/254 (38%), Gaps = 42/254 (16%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
PD ++S L+G+ K + +++ Y +K P T +L+ L + +K D +
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK--GCAPNLFTFNILLESLCRYRKLDEAL 551
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197
L E+ K +V PDA T TL+ F +G++ G Y
Sbjct: 552 GLLEEMKNKSVNPDAVT----------------FGTLIDGFCKNGDLD--------GAYT 587
Query: 198 KLHMYYSTILVYEKMKSAGIVLDSG-CYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP 256
++ KM+ A V S Y I+ A+ + + LF E R L
Sbjct: 588 ----------LFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDG 637
Query: 257 FSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEEL 316
++ Y+++ D K+G KF +M E G + + +I V A +
Sbjct: 638 YT---YRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGI 694
Query: 317 FKEAEEKGMLRDPE 330
+KG++ PE
Sbjct: 695 IHRMVQKGLV--PE 706
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/418 (22%), Positives = 185/418 (44%), Gaps = 44/418 (10%)
Query: 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183
I L S+++D + E NV PD TC+ L+ + +A + A + ++F
Sbjct: 280 ISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGR--SAKEVWEIF----- 332
Query: 184 IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243
EKM G+ + +++++ G E+ +
Sbjct: 333 --------------------------EKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVI 366
Query: 244 FLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICS 303
E + + + S +T +Y L D+ KS E F +M++KG+ + Y L+ +
Sbjct: 367 QTEMEKKGIRS---NTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDA 423
Query: 304 FASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVES----MKNAK 359
+A + + E L +E E+ G+ + + L+ Y G +K D+ MK
Sbjct: 424 YARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAY---GRTKKMSDMAADAFLRMKKVG 480
Query: 360 LKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAE 419
LK S A+++ +S + A +E++ +G P TY S+++A+ R K
Sbjct: 481 LKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLM 540
Query: 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMH 479
+++ M ++ + Y++++ + K G +A +V++ G +P+V YN LM+ +
Sbjct: 541 EIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAY 600
Query: 480 GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI 537
R ++ +L KEM + PD ++Y+T+I A+ R R+F FY++ + G +
Sbjct: 601 ARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAF-FYHKMMVKSGQV 657
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 156/348 (44%), Gaps = 18/348 (5%)
Query: 269 LGKSGRAFEALKFFRDMKEKGILEDPSIYASLICS--FASITEVKLAEE---LFKEAEEK 323
+G+SG L F+ M L++PS+ + CS F + ++A+ L +K
Sbjct: 212 MGESGFVKSCLYFYEWMS----LQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDK 267
Query: 324 GMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA- 382
RD + + + +V E+M + D ++CAI+ ++ G A
Sbjct: 268 EEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKINV-YPDNVTCAILITTLRKAGRSAK 326
Query: 383 -AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
+++E++ +G Q + ++ ++C L +A + EM++KG + Y++++
Sbjct: 327 EVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLM 386
Query: 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501
Y K+ I + L +M+ KG +P+ YN LMD + R VE L +EME +
Sbjct: 387 DAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLE 446
Query: 502 PDKVSYTTVISAYNRAREF-DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVK 560
P+ SYT +ISAY R ++ DM + + G ++ +S E+
Sbjct: 447 PNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYA 506
Query: 561 LLQDMKSEGTKLDERLYHSAMNALRDAG-----LQMQAQWLQQNFEGT 603
++M EG K Y S ++A R +G +++ L++ +GT
Sbjct: 507 SFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGT 554
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/480 (21%), Positives = 205/480 (42%), Gaps = 41/480 (8%)
Query: 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLP 150
L+D + + A D +++ K F P L+ +V+ KK+D ++SL + ++ +
Sbjct: 61 LRDIKLND-AIDLFSDMVKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRN 118
Query: 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVY 209
D +T + ++ + +A ++L + G E + S + G+ + + + +
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178
Query: 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSL 269
+KM G D Y I+++ K F E + + + + Y L + L
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT---YTALVNGL 235
Query: 270 GKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDP 329
S R +A + DM +K I + Y++L+ +F +V A+ELF+E
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEE---------- 285
Query: 330 EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389
+V M I+ +V + +++NG A ++++
Sbjct: 286 -----MVRMSIDPDIVTYS--------------------SLINGLCLHDRIDEANQMFDL 320
Query: 390 LISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449
++S+GC+ V+Y ++IN +C+ K+F EM Q+G V Y++++ + + G
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380
Query: 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTT 509
+ A ++M G P++W YN L+ L + ++++M++R++ D V+YTT
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440
Query: 510 VISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG 569
VI + + + + + G D M+ + E+ L MK EG
Sbjct: 441 VIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 96/418 (22%), Positives = 175/418 (41%), Gaps = 53/418 (12%)
Query: 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD-------SGCYCQIMEAYYKIGDS 237
+++ FN + KL Y I + +KM+ GI D C+C +
Sbjct: 84 SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSL----- 138
Query: 238 EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297
AL + K KL P + L + + R +A+ M E G D Y
Sbjct: 139 ----ALSILGKMLKLGYEPDRVTIGS-LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAY 193
Query: 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357
++I S V A + FKE E KG I +V T
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKG---------------IRPNVVTYT--------- 229
Query: 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417
A+VNG + A ++ +I + P +TY+++++A+ + +
Sbjct: 230 -----------ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLE 278
Query: 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477
A+++F EM + D +V YSS++ RI +A + M +KGC +V YN+L++
Sbjct: 279 AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLIN 338
Query: 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI 537
+AK + KL++EM +R + + V+Y T+I + +A + D +F+++ G
Sbjct: 339 GFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISP 398
Query: 538 DRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQW 595
D I++G ++E+ + + +DM+ LD Y + + + G +++ W
Sbjct: 399 DIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG-KVEEAW 455
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 2/236 (0%)
Query: 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428
++VNGF +R AV + ++++ G P V Y +II++ C+ + A F E+++K
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219
Query: 429 GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQV 488
G VV Y+++V + R DA L++ M K PNV Y++L+D + + +
Sbjct: 220 GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEA 279
Query: 489 EKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGV 548
++L++EM R + PD V+Y+++I+ D + ++ G + D ++
Sbjct: 280 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339
Query: 549 FSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQ--WLQQNFEG 602
F K ++E+ +KL ++M G + Y++ + AG +AQ + Q +F G
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/398 (20%), Positives = 163/398 (40%), Gaps = 59/398 (14%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
PD +++ + + K + + A+D++ E ++ RP T L+ L S +W
Sbjct: 188 PDIVAYNAIIDSLCKTKRVND-AFDFFKEIER-KGIRPNVVTYTALVNGLCNSSRWSDAA 245
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197
L D + P+ T S L+ + V+ K A L + E+ ++ + + Y+
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE------EMVRMSIDPDIVTYS 299
Query: 198 KLHMYYSTILVYEKMKSAGIVLD----SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD 253
L + + +++++ A + D GC ++
Sbjct: 300 SL---INGLCLHDRIDEANQMFDLMVSKGCLADVVS------------------------ 332
Query: 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLA 313
Y L + K+ R + +K FR+M ++G++ + Y +LI F +V A
Sbjct: 333 --------YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA 384
Query: 314 EELFKEAEEKGMLRDPEVCLKLVLM--YIEEGLVEKTLDVVESMKNAKLKISDCISCAIV 371
+E F + + G+ P++ +L+ + G +EK L + E M+ ++ + ++
Sbjct: 385 QEFFSQMDFFGI--SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442
Query: 372 NGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFD 431
G K A ++ L +G P VTY ++++ C L + E ++ +M+Q+G
Sbjct: 443 RGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLM 502
Query: 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
K S G I + L+ KM + G P++
Sbjct: 503 KNDCTLSD--------GDITLSAELIKKMLSCGYAPSL 532
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%)
Query: 449 RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYT 508
++ DA+ L + M P++ +N L+ + K V L K+ME + D ++
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 509 TVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568
VI+ + + + + + G DR G +V F + +++ + V L+ M
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 569 GTKLDERLYHSAMNAL 584
G K D Y++ +++L
Sbjct: 185 GYKPDIVAYNAIIDSL 200
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/514 (21%), Positives = 218/514 (42%), Gaps = 27/514 (5%)
Query: 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159
A D + E + RP L + ++K++D ++ L + ++ + + +T S ++
Sbjct: 56 AVDLFQEMTR-SRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI 114
Query: 160 ASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG-- 216
C R RK +A + + I G E + F++ + G + + ++M G
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174
Query: 217 ---IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTH------MYKILCD 267
I L++ + K+ D A L ++ ++ T F + + K++C
Sbjct: 175 PTLITLNALVNGLCLNG--KVSD----AVLLID----RMVETGFQPNEVTYGPVLKVMC- 223
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
KSG+ A++ R M+E+ I D Y+ +I + A LF E E KG
Sbjct: 224 ---KSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKA 280
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVY 387
D + L+ + G + ++ M K+ A+++ F K A +++
Sbjct: 281 DIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELH 340
Query: 388 EQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 447
+++I +G P VTY S+I+ +C+ KA + M KG + ++ ++ Y K
Sbjct: 341 KEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400
Query: 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY 507
I D + L KM +G + YN+L+ L ++L++EM R+V PD VSY
Sbjct: 401 NLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSY 460
Query: 508 TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567
++ E + ++ + + + +D I I++ S++++ L +
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520
Query: 568 EGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601
+G K D + Y+ + L G +A L + E
Sbjct: 521 KGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/455 (21%), Positives = 175/455 (38%), Gaps = 76/455 (16%)
Query: 65 IELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLI 124
+EL R + DA K+ + G+ KD A++ +NE + + F+ + LI
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN-AFNLFNEME-IKGFKADIIIYTTLI 289
Query: 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI 184
R + +WD L D + PD S L+ V+ K + A L
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEEL---------- 339
Query: 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALF 244
+++M GI D+ Y +++ + K +K +
Sbjct: 340 ------------------------HKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375
Query: 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304
S+ + + IL + K+ + L+ FR M +G++ D Y +LI F
Sbjct: 376 DLMVSKGCGP---NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432
Query: 305 ASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYI-EEGLVEKTLDVVESMKNAKLKIS 363
+ ++++A+ELF+E + +R V K++L + + G EK L++ E ++ +K+++
Sbjct: 433 CELGKLEVAKELFQEMVSR-RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491
Query: 364 DCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFI 423
I Y II+ C + A +F
Sbjct: 492 IGI-----------------------------------YNIIIHGMCNASKVDDAWDLFC 516
Query: 424 EMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAK 483
+ KG V Y+ M+ K G + +A L KM+ G PN YN L+ H
Sbjct: 517 SLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEG 576
Query: 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAR 518
+ + KL +E++R + D + V+ + R
Sbjct: 577 DATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGR 611
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 11/286 (3%)
Query: 66 ELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAY--DYYNEAKKLPEFRPEKSTLKLL 123
EL+++ + PD + S + G K+ Q + + D P R T +L
Sbjct: 338 ELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIR----TFNIL 393
Query: 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG- 182
I ++ D + L + V+ D T + L+ K ++A L Q ++
Sbjct: 394 INGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453
Query: 183 EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242
++++ + G + ++EK++ + + LD G Y I+ +
Sbjct: 454 RPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 513
Query: 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLIC 302
LF S L Y I+ L K G EA FR M+E G + Y LI
Sbjct: 514 LFC---SLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIR 570
Query: 303 SFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKT 348
+ + + +L +E + G D +K+V+ + +G ++K+
Sbjct: 571 AHLGEGDATKSAKLIEEIKRCGFSVDAST-VKMVVDMLSDGRLKKS 615
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/495 (22%), Positives = 211/495 (42%), Gaps = 14/495 (2%)
Query: 77 VPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSI 136
V +A ++ +H +LK E A + Y L FRP T L+ L + + DS+
Sbjct: 185 VLNAYSYNGLIHLLLKSRFCTE-AMEVYRRMI-LEGFRPSLQTYSSLMVGLGKRRDIDSV 242
Query: 137 VSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG----EIALLAFNSA 192
+ L ++ + + P+ +T + + RA K A +L+ +G + A
Sbjct: 243 MGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDA 302
Query: 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL 252
+ KL V+EKMK+ D Y +++ + D + V + E +
Sbjct: 303 LCTARKLDCAKE---VFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEK--- 356
Query: 253 DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKL 312
D + IL D+L K+G EA M+++GIL + Y +LIC + +
Sbjct: 357 DGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDD 416
Query: 313 AEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISC-AIV 371
A ELF E G+ + + Y + G L+ E MK + + ++C A +
Sbjct: 417 ALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA-PNIVACNASL 475
Query: 372 NGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFD 431
+K A +++ L G +P VTY ++ Y ++ +A K+ EM + G +
Sbjct: 476 YSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCE 535
Query: 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKL 491
V+ +S++ K R+ +A + +MK +P V YN+L+ G+ +++ +L
Sbjct: 536 PDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIEL 595
Query: 492 WKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSK 551
++ M ++ P+ +++ T+ + E + +K + G V D ++ K
Sbjct: 596 FEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVK 655
Query: 552 LSQIEELVKLLQDMK 566
Q++E + MK
Sbjct: 656 NGQVKEAMCFFHQMK 670
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 169/399 (42%), Gaps = 14/399 (3%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
VY +M G Y +M K D + V L E ++ L ++ + I
Sbjct: 210 VYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYT---FTICIR 266
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
LG++G+ EA + + M ++G D Y LI + + ++ A+E+F++ +
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKP 326
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK---ISDCISCAI-VNGFSKRRGYWAA 383
D + L+ + + + LD V+ + K + D ++ I V+ K + A
Sbjct: 327 DRVTYITLLDRFSDN----RDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 382
Query: 384 VKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 443
+ + QG +P TY ++I R+ A ++F M+ G Y +
Sbjct: 383 FDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442
Query: 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD 503
YGK+G A+ KMK KG PN+ N+ + +A R+ ++++ ++ + PD
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502
Query: 504 KVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQ 563
V+Y ++ Y++ E D +K +E NG D + ++ K +++E K+
Sbjct: 503 SVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFM 562
Query: 564 DMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602
MK K Y++ + L G +A L FEG
Sbjct: 563 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIEL---FEG 598
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/470 (21%), Positives = 186/470 (39%), Gaps = 72/470 (15%)
Query: 77 VPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKL--PEF--------------------- 113
VPD +++ + G++K+ Q +E A ++++ KKL P+F
Sbjct: 640 VPDVFTYNTIIFGLVKNGQVKE-AMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYK 698
Query: 114 -----------RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC-SRLVAS 161
+P + LI ++ D+ VS SE + D + ++
Sbjct: 699 IITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRY 758
Query: 162 CVRARKFKIANTLLQVFITDGEIA--LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL 219
+ A TL + F D + L +N +GG + M V+ ++KS G +
Sbjct: 759 SCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIP 818
Query: 220 DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHM------------------ 261
D Y +++AY K G +++ L+ E + + ++ + ++
Sbjct: 819 DVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLY 878
Query: 262 ---------------YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS 306
Y L D L KSGR +EA + F M + G + +IY LI F
Sbjct: 879 YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938
Query: 307 ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI 366
E A LFK ++G+ D + LV G V++ L + +K + L
Sbjct: 939 AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVC 998
Query: 367 SCAIVNGFSKRRGYWAAVKVYEQL-ISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEM 425
I+NG K A+ ++ ++ S+G P TY S+I + +A K++ E+
Sbjct: 999 YNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEI 1058
Query: 426 QQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSL 475
Q+ G + V +++++ Y +G+ A + M G PN Y L
Sbjct: 1059 QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 112/531 (21%), Positives = 218/531 (41%), Gaps = 30/531 (5%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
PD +S ++ + K + E A+ + K++ + +P T L+ L ++ K +
Sbjct: 536 PDVIVVNSLINTLYKADRVDE-AWKMFMRMKEM-KLKPTVVTYNTLLAGLGKNGKIQEAI 593
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAFNSAMGGY 196
L E P+ T + L + + +A +L + G + + +N+ + G
Sbjct: 594 ELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGL 653
Query: 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK---IGDSEKVAALFL-ECKSRKL 252
K + + +MK + D C ++ K I D+ K+ FL C +
Sbjct: 654 VKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQ-- 710
Query: 253 DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED-PSIYASLICSFASITEVK 311
P + ++ L ++G A+ F + GI D SI +I V
Sbjct: 711 ---PANLFWEDLIGSILAEAGID-NAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVS 766
Query: 312 LAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKI--SDCISCA 369
A LF E K + P++ +L+ GL+E D++E ++ L++ + CI
Sbjct: 767 GARTLF-EKFTKDLGVQPKLPTYNLLI---GGLLEA--DMIEIAQDVFLQVKSTGCIPDV 820
Query: 370 -----IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
+++ + K ++Y+++ + C +T+ +I+ + A ++ +
Sbjct: 821 ATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYD 880
Query: 425 -MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAK 483
M + F Y ++ K+GR+ +A L M GC PN IYN L++ G+A
Sbjct: 881 LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940
Query: 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAG 543
L+K M + V PD +Y+ ++ D + ++ E + +G D
Sbjct: 941 EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000
Query: 544 IMVGVFSKLSQIEELVKLLQDMK-SEGTKLDERLYHSAMNALRDAGLQMQA 593
+++ K ++EE + L +MK S G D Y+S + L AG+ +A
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 110/247 (44%)
Query: 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401
+G +E+ V + M+ +K I S + G A ++ G + +
Sbjct: 131 DGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYS 190
Query: 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461
Y +I+ + ++A +V+ M +GF + YSS++ GK I M L+ +M+
Sbjct: 191 YNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEME 250
Query: 462 AKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFD 521
G +PNV+ + + + GRA + + ++ K M+ PD V+YT +I A AR+ D
Sbjct: 251 TLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLD 310
Query: 522 MCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581
+ + + + DR ++ FS ++ + + +M+ +G D + +
Sbjct: 311 CAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILV 370
Query: 582 NALRDAG 588
+AL AG
Sbjct: 371 DALCKAG 377
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 137/326 (42%), Gaps = 7/326 (2%)
Query: 85 SFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFK 144
+ L G L + E+A D + + K P+ +T L+ +S K D + L ++
Sbjct: 789 NLLIGGLLEADMIEIAQDVFLQVKSTGCI-PDVATYNFLLDAYGKSGKIDELFELYKEMS 847
Query: 145 IYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLA--FNSAMGGYNKLHMY 202
+ + T + +++ V+A A L ++D + + A + + G +K
Sbjct: 848 THECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRL 907
Query: 203 YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMY 262
Y ++E M G + Y ++ + K G+++ ALF K + Y
Sbjct: 908 YEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALF---KRMVKEGVRPDLKTY 964
Query: 263 KILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE- 321
+L D L GR E L +F+++KE G+ D Y +I ++ A LF E +
Sbjct: 965 SVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKT 1024
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381
+G+ D L+L G+VE+ + ++ A L+ + A++ G+S
Sbjct: 1025 SRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPE 1084
Query: 382 AAVKVYEQLISQGCIPGQVTYASIIN 407
A VY+ +++ G P TY + N
Sbjct: 1085 HAYAVYQTMVTGGFSPNTGTYEQLPN 1110
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 174/377 (46%), Gaps = 16/377 (4%)
Query: 158 LVASCVRARKFKIANTLLQVFITDG---EIALLAF-NSAMGGYNKLHMYYSTILVYEKMK 213
L S +A +A + + +DG LL F S+ KLH + +L +++
Sbjct: 109 LTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVE 168
Query: 214 SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273
+V++S ++ K+ E LF E + S T + IL L G
Sbjct: 169 GCCMVVNS-----LLNTLVKLDRVEDAMKLFDE--HLRFQSCN-DTKTFNILIRGLCGVG 220
Query: 274 RAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCL 333
+A +AL+ M G D Y +LI F E+ A E+FK+ + G + P+V
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKS-GSVCSPDVVT 279
Query: 334 --KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLI 391
++ Y + G + + +++ M + ++ +V+G++K A ++ ++I
Sbjct: 280 YTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMI 339
Query: 392 SQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIR 451
S GC P VT+ S+I+ YCR+ S+ +++ EM +G YS ++ R+
Sbjct: 340 SFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLL 399
Query: 452 DAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVI 511
A L+ ++ +K P ++YN ++D +A + + + +EME++K PDK+++T +I
Sbjct: 400 KARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459
Query: 512 SAY-NRAREFDMCVKFY 527
+ + R F+ F+
Sbjct: 460 IGHCMKGRMFEAVSIFH 476
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 178/416 (42%), Gaps = 35/416 (8%)
Query: 204 STILVYEKMKSAGIVLDSG-CYCQI---------MEAYYKIGDSEKVAALFLECKSRKLD 253
ST+ VY V DS C+C + E K+ ++ + F E KL+
Sbjct: 46 STLFVYR-------VPDSDLCFCYLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLN 98
Query: 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLA 313
S Y +L SL K+G A + F MK G+ + + L+ SFA ++ A
Sbjct: 99 -IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFA 157
Query: 314 EELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVE-SMK--NAKLKISDCISCAI 370
L ++ E E C +V+ + LV+ LD VE +MK + L+ C
Sbjct: 158 TALLLQSFEV------EGCC-MVVNSLLNTLVK--LDRVEDAMKLFDEHLRFQSCNDTKT 208
Query: 371 VN----GFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQ 426
N G A+++ + GC P VTY ++I +C+ +KA ++F +++
Sbjct: 209 FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVK 268
Query: 427 QKGF-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485
VV Y+SM++ Y K G++R+A L+ M G P +N L+D + +A +
Sbjct: 269 SGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEM 328
Query: 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIM 545
E++ +M PD V++T++I Y R + + + E G + I+
Sbjct: 329 LTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSIL 388
Query: 546 VGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601
+ +++ + +LL + S+ +Y+ ++ AG +A + + E
Sbjct: 389 INALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEME 444
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 145/303 (47%), Gaps = 1/303 (0%)
Query: 264 ILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEE 322
I+ ++ +SG +A+ F ++ + LE + Y SLI +A I +V+ + + E
Sbjct: 230 IVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSE 289
Query: 323 KGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA 382
+G+ R+ L+ Y ++GL+E+ V E +K KL + +++G+ +
Sbjct: 290 RGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRD 349
Query: 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442
AV+V++ +I G S+IN YC+ +AE++F M Y+++V
Sbjct: 350 AVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVD 409
Query: 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502
Y + G + +A+ L +M K P V YN L+ + R V LWK M +R V
Sbjct: 410 GYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNA 469
Query: 503 DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLL 562
D++S +T++ A + +F+ +K + G + D +M+ K+ ++ E ++L
Sbjct: 470 DEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEIL 529
Query: 563 QDM 565
++
Sbjct: 530 DNV 532
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/445 (20%), Positives = 197/445 (44%), Gaps = 13/445 (2%)
Query: 146 YNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIAL------LAFNSAMGGYNKL 199
+ V PD TCS +V + R+ A VF + E +L + +NS + GY +
Sbjct: 219 FEVSPDVFTCSIVVNAYCRSGNVDKA----MVFAKETESSLGLELNVVTYNSLINGYAMI 274
Query: 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFST 259
V M G+ + Y +++ Y K G E+ +F K +KL +
Sbjct: 275 GDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVA---DQ 331
Query: 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKE 319
HMY +L D ++G+ +A++ +M E G+ + +I SLI + ++ AE++F
Sbjct: 332 HMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSR 391
Query: 320 AEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRG 379
+ + D LV Y G V++ L + + M ++ + ++ G+S+
Sbjct: 392 MNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGA 451
Query: 380 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSS 439
+ + +++ ++ +G +++ ++++ A ++ +++A K++ + +G + +
Sbjct: 452 FHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNV 511
Query: 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499
M++ K ++ +A ++ + C+P V Y +L + + NL++ + + MER+
Sbjct: 512 MISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKG 571
Query: 500 VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559
+ P Y T+IS + R + E R G A G ++ + + I++
Sbjct: 572 IFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAY 631
Query: 560 KLLQDMKSEGTKLDERLYHSAMNAL 584
+M +G L+ + N+L
Sbjct: 632 ATCFEMIEKGITLNVNICSKIANSL 656
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 3/274 (1%)
Query: 329 PEV--CLKLVLMYIEEGLVEKTLDVV-ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385
P+V C +V Y G V+K + E+ + L+++ +++NG++ +
Sbjct: 223 PDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTR 282
Query: 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445
V + +G VTY S+I YC+ L +AE VF +++K Y ++ Y
Sbjct: 283 VLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYC 342
Query: 446 KTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV 505
+TG+IRDA+ + M G N I NSL++ + ++ L + E+++ M + PD
Sbjct: 343 RTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHH 402
Query: 506 SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565
+Y T++ Y RA D +K ++ V I++ +S++ +++ L + M
Sbjct: 403 TYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMM 462
Query: 566 KSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599
G DE + + AL G +A L +N
Sbjct: 463 LKRGVNADEISCSTLLEALFKLGDFNEAMKLWEN 496
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 166/381 (43%), Gaps = 14/381 (3%)
Query: 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLL-QVFITD 181
L+ L + ++ + L E+ +L D T + +++ + K A +L V I
Sbjct: 477 LLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFR 536
Query: 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA 241
+ A+ + + GY K+ V E M+ GI Y ++ +K KVA
Sbjct: 537 CKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVA 596
Query: 242 ALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLI 301
L +E ++R L TP + Y L G +A +M EKGI + +I + +
Sbjct: 597 DLVIELRARGL--TP-TVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIA 653
Query: 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVE--KTLDVVESMKNA- 358
S + ++ A L ++ + +L LK ++E KT + ES++N+
Sbjct: 654 NSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLK---EFLEASATTCLKTQKIAESVENST 710
Query: 359 --KLKISDCISCAI-VNGFSKRRGYWAAVKVYEQLISQG-CIPGQVTYASIINAYCRIAL 414
KL + + I + + G K A K++ L+S IP + TY +I+
Sbjct: 711 PKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGD 770
Query: 415 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNS 474
+KA + EM KG +V Y++++ K G + A L+ K+ KG PN YN+
Sbjct: 771 INKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNT 830
Query: 475 LMDMHGRAKNLRQVEKLWKEM 495
L+D ++ N+ + +L ++M
Sbjct: 831 LIDGLVKSGNVAEAMRLKEKM 851
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/492 (17%), Positives = 181/492 (36%), Gaps = 84/492 (17%)
Query: 150 PDAHTCSRLVASCVRA----RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYST 205
PD HT + LV RA K+ + + Q + ++ +N + GY+++ ++
Sbjct: 399 PDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVP---TVMTYNILLKGYSRIGAFHDV 455
Query: 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265
+ +++ M G+ D ++EA +K+GD
Sbjct: 456 LSLWKMMLKRGVNADEISCSTLLEALFKLGDFN--------------------------- 488
Query: 266 CDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325
EA+K + ++ +G+L D +I + +V A+E+
Sbjct: 489 -----------EAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRC 537
Query: 326 LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385
+ L Y + G +++ V E M+ + + + +++G K R
Sbjct: 538 KPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVAD 597
Query: 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445
+ +L ++G P TY ++I +C I + KA EM +KG V S +
Sbjct: 598 LVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLF 657
Query: 446 KTGRIRDAMWLVAKM-------------------KAKGC-------------------EP 467
+ +I +A L+ K+ A C P
Sbjct: 658 RLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVP 717
Query: 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEM-ERRKVTPDKVSYTTVISAYNRAREFDMCVKF 526
N +YN + +A L KL+ ++ + PD+ +YT +I A + +
Sbjct: 718 NNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTL 777
Query: 527 YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRD 586
+E + G + + ++ KL ++ +LL + +G + Y++ ++ L
Sbjct: 778 RDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVK 837
Query: 587 AGLQMQAQWLQQ 598
+G +A L++
Sbjct: 838 SGNVAEAMRLKE 849
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 185/464 (39%), Gaps = 56/464 (12%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
PD +++ + G + Y +EA KL + +K + ++ Y + K + I
Sbjct: 399 PDHHTYNTLVDGYCRA--------GYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIG 450
Query: 138 SLSEDFKIYNVL------PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAFN 190
+ + ++ ++ D +CS L+ + + F A L + + G + + N
Sbjct: 451 AFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLN 510
Query: 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDS----------GCYCQIMEAYYKIGDSEKV 240
+ G K+ EK+ A +LD+ Y + YYK+G+ ++
Sbjct: 511 VMISGLCKM----------EKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEA 560
Query: 241 AAL--FLECKSRKLDSTPFST-HMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297
A+ ++E K F T MY L K + +++ +G+ + Y
Sbjct: 561 FAVKEYMERKG------IFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATY 614
Query: 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV-----LMYIEEG--LVEKTLD 350
+LI + +I + A E EKG+ + +C K+ L I+E L++K +D
Sbjct: 615 GALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVD 674
Query: 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410
+ + + + + + ++ A V + +P + Y I C
Sbjct: 675 F-DLLLPGYQSLKEFLEASATTCLKTQK---IAESVENSTPKKLLVPNNIVYNVAIAGLC 730
Query: 411 RIALYSKAEKVFIEM-QQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
+ A K+F ++ F Y+ ++ G I A L +M KG PN+
Sbjct: 731 KAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNI 790
Query: 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISA 513
YN+L+ + N+ + ++L ++ ++ +TP+ ++Y T+I
Sbjct: 791 VTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDG 834
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 167/363 (46%), Gaps = 44/363 (12%)
Query: 224 YCQIMEAYYKIGD---SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280
+ ++ AY K+G+ +E+V ++ K+ STP + Y L +S G+ G+ A
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVL-----SKMGSTP-NVISYTALMESYGRGGKCNNAEA 195
Query: 281 FFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYI 340
FR M+ G Y ++ +F + K AEE+F
Sbjct: 196 IFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVF----------------------- 232
Query: 341 EEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV 400
E LD K + LK + ++ + K Y A KV+ ++ +G V
Sbjct: 233 -----ETLLD----EKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV 283
Query: 401 TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460
TY S+++ Y + K++ +MQ+ VV+Y+ ++ YG+ R +A+ + +M
Sbjct: 284 TYNSLMSFETS---YKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEM 340
Query: 461 KAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF 520
G P YN L+D + + Q + ++K M R ++ PD SYTT++SAY A +
Sbjct: 341 LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDM 400
Query: 521 DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSA 580
+ KF+ +++G + G ++ ++K + +E+++++ + M+ G K ++ + +
Sbjct: 401 EGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTI 460
Query: 581 MNA 583
M+A
Sbjct: 461 MDA 463
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Query: 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVF---IEMQQKGFDKCVVAYSS 439
A ++ ++ S G P +TY I+ + + +AE+VF ++ ++ Y
Sbjct: 193 AEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHM 252
Query: 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499
M+ MY K G A + + M KG + YNSLM + ++V K++ +M+R
Sbjct: 253 MIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFE---TSYKEVSKIYDQMQRSD 309
Query: 500 VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIA-GIMVGVFSKLSQIEEL 558
+ PD VSY +I AY RAR + + + E ++ GV A I++ F+ +E+
Sbjct: 310 IQPDVVSYALLIKAYGRARREEEALSVFEEM-LDAGVRPTHKAYNILLDAFAISGMVEQA 368
Query: 559 VKLLQDMKSEGTKLDERLYHSAMNALRDA 587
+ + M+ + D Y + ++A +A
Sbjct: 369 KTVFKSMRRDRIFPDLWSYTTMLSAYVNA 397
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 32/149 (21%)
Query: 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499
++ YGK G A +++ + G PNV Y +LM+ +GR E +++ M+
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204
Query: 500 VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559
P ++Y ++ + + G K + EE+
Sbjct: 205 PEPSAITYQIILKTF--------------------------VEG------DKFKEAEEVF 232
Query: 560 KLLQDMKSEGTKLDERLYHSAMNALRDAG 588
+ L D K K D+++YH + + AG
Sbjct: 233 ETLLDEKKSPLKPDQKMYHMMIYMYKKAG 261
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/475 (20%), Positives = 215/475 (45%), Gaps = 51/475 (10%)
Query: 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159
A + Y+ +L + P+ L+ LV+S++ L + K+Y+ + D
Sbjct: 153 AVEIYDYVVELYDSVPDVIACNSLLSLLVKSRR------LGDARKVYDEMCDRGDSVDNY 206
Query: 160 ASCVRAR------KFKIANTLLQVFITDGEIALLAF-NSAMGGYNKLHMYYSTILVYEKM 212
++C+ + K ++ L++ G I + F N+ +GGY KL + LV++++
Sbjct: 207 STCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKEL 266
Query: 213 KSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL-------------------- 252
K G + + ++ + K GD L E K R L
Sbjct: 267 KLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYK 326
Query: 253 -------------DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYAS 299
D P Y IL + L K G+ A+ F + +KG++ + YA
Sbjct: 327 VDPAESIGWIIANDCKP-DVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAP 385
Query: 300 LICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMY--IEEGLVEKTLDVVESMKN 357
LI ++ E +A +L + E+G P++ +L++ + G ++ +++ + +
Sbjct: 386 LIQAYCKSKEYDIASKLLLQMAERGC--KPDIVTYGILIHGLVVSGHMDDAVNMKVKLID 443
Query: 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417
+ I +++G K + A ++ +++ + +P YA++I+ + R + +
Sbjct: 444 RGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDE 503
Query: 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477
A KVF +KG VV +++M+ + ++G + +A+ + +M + P+ + Y++++D
Sbjct: 504 ARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIID 563
Query: 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532
+ + +++ K+++ ME+ K P+ V+YT++I+ + +F M + + E ++
Sbjct: 564 GYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQL 618
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/513 (21%), Positives = 219/513 (42%), Gaps = 32/513 (6%)
Query: 86 FLHGMLKDPQTQELAYDYYNEAKKLPEFRPE---KSTLKLLIRYLVQSKKWDSIVSL-SE 141
F+ ++D + +D+ + KK F S LKLL RY + ++ D + +L +E
Sbjct: 69 FVFDRIQDVEIGVKLFDWLSSEKKDEFFSNGFACSSFLKLLARYRIFNEIEDVLGNLRNE 128
Query: 142 DFKI-YNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200
+ K+ + L +H S ++ +I + +++++ D ++A NS + K
Sbjct: 129 NVKLTHEAL--SHVLHAYAESGSLSKAVEIYDYVVELY--DSVPDVIACNSLLSLLVKSR 184
Query: 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTH 260
VY++M G +D+ C +++ G E V +E + K P +
Sbjct: 185 RLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVE-VGRKLIEGRWGK-GCIP-NIV 241
Query: 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEA 320
Y + K G A F+++K KG + + ++I F + ++ L E
Sbjct: 242 FYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEV 301
Query: 321 EEKGMLRDPEVCLKLVLMYIEEGLVEK-----TLDVVESMKNAKLKISDC-----ISCAI 370
+E+G L++ + ++ + K +D ES+ + +DC +
Sbjct: 302 KERG--------LRVSVWFLNNIIDAKYRHGYKVDPAESI--GWIIANDCKPDVATYNIL 351
Query: 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
+N K AV ++ +G IP ++YA +I AYC+ Y A K+ ++M ++G
Sbjct: 352 INRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGC 411
Query: 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490
+V Y ++ +G + DA+ + K+ +G P+ IYN LM + +
Sbjct: 412 KPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKL 471
Query: 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550
L+ EM R + PD Y T+I + R+ +FD K ++ G +D M+ F
Sbjct: 472 LFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFC 531
Query: 551 KLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA 583
+ ++E + + M E D+ Y + ++
Sbjct: 532 RSGMLDEALACMNRMNEEHLVPDKFTYSTIIDG 564
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/392 (21%), Positives = 161/392 (41%), Gaps = 45/392 (11%)
Query: 86 FLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKI 145
+ HG DP + + + N+ K P+ +T +LI L + K + V ++
Sbjct: 321 YRHGYKVDP-AESIGWIIANDCK------PDVATYNILINRLCKEGKKEVAVGFLDEASK 373
Query: 146 YNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYST 205
++P+ + + L+ + +++++ IA+ LL
Sbjct: 374 KGLIPNNLSYAPLIQAYCKSKEYDIASKLLL----------------------------- 404
Query: 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265
+M G D Y ++ G + + ++ R + +Y +L
Sbjct: 405 -----QMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSP---DAAIYNML 456
Query: 266 CDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325
L K+GR A F +M ++ IL D +YA+LI F + A ++F + EKG+
Sbjct: 457 MSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGV 516
Query: 326 LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385
D ++ + G++++ L + M L I++G+ K++ A+K
Sbjct: 517 KVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIK 576
Query: 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445
++ + C P VTY S+IN +C + AE+ F EMQ + VV Y++++
Sbjct: 577 IFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLA 636
Query: 446 K-TGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476
K + + A++ M C PN +N L+
Sbjct: 637 KESSTLEKAVYYWELMMTNKCVPNEVTFNCLL 668
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 127/305 (41%), Gaps = 37/305 (12%)
Query: 329 PEV--CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKV 386
P+V C L+ + ++ + V + M + + + +C +V G K+
Sbjct: 168 PDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKL 227
Query: 387 YEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446
E +GCIP V Y +II YC++ A VF E++ KGF + + +M+ + K
Sbjct: 228 IEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCK 287
Query: 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM---HGRAKNLRQ---------------- 487
G + L++++K +G +VW N+++D HG + +
Sbjct: 288 EGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVAT 347
Query: 488 ----VEKLWKE------------MERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531
+ +L KE ++ + P+ +SY +I AY +++E+D+ K +
Sbjct: 348 YNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMA 407
Query: 532 MNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQM 591
G D GI++ +++ V + + G D +Y+ M+ L G +
Sbjct: 408 ERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFL 467
Query: 592 QAQWL 596
A+ L
Sbjct: 468 PAKLL 472
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 132/300 (44%), Gaps = 4/300 (1%)
Query: 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275
G++ ++ Y +++AY K + + + L L+ R + Y IL L SG
Sbjct: 375 GLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVT---YGILIHGLVVSGHM 431
Query: 276 FEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL 335
+A+ + ++G+ D +IY L+ A+ LF E ++ +L D V L
Sbjct: 432 DDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATL 491
Query: 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC 395
+ +I G ++ V +K+ A++ GF + A+ ++ +
Sbjct: 492 IDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHL 551
Query: 396 IPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMW 455
+P + TY++II+ Y + + A K+F M++ VV Y+S++ + G + A
Sbjct: 552 VPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEE 611
Query: 456 LVAKMKAKGCEPNVWIYNSLM-DMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514
+M+ + PNV Y +L+ + + L + W+ M K P++V++ ++ +
Sbjct: 612 TFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGF 671
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 89/441 (20%), Positives = 179/441 (40%), Gaps = 37/441 (8%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
PD ++ ++ + K+ + +E+A + +EA K P + LI+ +SK++D
Sbjct: 343 PDVATYNILINRLCKEGK-KEVAVGFLDEASK-KGLIPNNLSYAPLIQAYCKSKEYDIAS 400
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLA-FNSAMGGY 196
L PD T L+ V + A + I G A +N M G
Sbjct: 401 KLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGL 460
Query: 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD---SEKVAALFLECKSRKLD 253
K + L++ +M I+ D+ Y +++ + + GD + KV +L +E K K+D
Sbjct: 461 CKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVE-KGVKVD 519
Query: 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLA 313
+ M K C +SG EAL M E+ ++ D Y+++I + ++ A
Sbjct: 520 VVHHNA-MIKGFC----RSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATA 574
Query: 314 EELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNG 373
++F+ E+ + L+ + +G + + + M+ L + ++
Sbjct: 575 IKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRS 634
Query: 374 FSKRRGYWA-AVKVYEQLISQGCIPGQVTYASIINAYCR-----------------IALY 415
+K AV +E +++ C+P +VT+ ++ + + +L+
Sbjct: 635 LAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLF 694
Query: 416 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSL 475
S + F M+ G+ AY+S + G ++ A KM KG P+ + ++
Sbjct: 695 S---EFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAI 751
Query: 476 MDMHGRAKNLRQVEKLWKEME 496
+ N +Q W+ M+
Sbjct: 752 LHGFCVVGNSKQ----WRNMD 768
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/311 (18%), Positives = 115/311 (36%), Gaps = 35/311 (11%)
Query: 313 AEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVN 372
A +++ E ++G D LV EG VE ++E + I+
Sbjct: 189 ARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIG 248
Query: 373 GFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF-- 430
G+ K A V+++L +G +P T+ ++IN +C+ + ++++ E++++G
Sbjct: 249 GYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRV 308
Query: 431 ------------------------------DKC---VVAYSSMVAMYGKTGRIRDAMWLV 457
+ C V Y+ ++ K G+ A+ +
Sbjct: 309 SVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFL 368
Query: 458 AKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517
+ KG PN Y L+ + ++K KL +M R PD V+Y +I +
Sbjct: 369 DEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVS 428
Query: 518 REFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLY 577
D V + G D AI +++ K + L +M D +Y
Sbjct: 429 GHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVY 488
Query: 578 HSAMNALRDAG 588
+ ++ +G
Sbjct: 489 ATLIDGFIRSG 499
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 101/439 (23%), Positives = 182/439 (41%), Gaps = 5/439 (1%)
Query: 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIAN 172
+ P TL L+ + V+L + PD T + LV + K A
Sbjct: 141 YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV 200
Query: 173 TLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231
L++ + G + L+ + + + G K + + KM+ I D Y I++
Sbjct: 201 ALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGL 260
Query: 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL 291
K + LF + +++ + F+ Y L L GR +A + DM EK I
Sbjct: 261 CKYKHMDDAFDLFNKMETKGIKPDVFT---YNPLISCLCNYGRWSDASRLLSDMLEKNIN 317
Query: 292 EDPSIYASLICSFASITEVKLAEELFKE-AEEKGMLRDPEVCLKLVLMYIEEGLVEKTLD 350
D + +LI +F ++ AE+L+ E + K D L+ + + VE+ ++
Sbjct: 318 PDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGME 377
Query: 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410
V M L + +++GF + R A V++Q++S G P +TY +++ C
Sbjct: 378 VFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLC 437
Query: 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVW 470
A VF MQ++ +V Y++M+ K G++ D L + KG +PNV
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497
Query: 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530
Y ++M R + + L+ EM+ P+ +Y T+I A R + + E
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557
Query: 531 RMNGGVIDRAIAGIMVGVF 549
R G D + G++ +
Sbjct: 558 RSCGFAGDASTFGLVTNML 576
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 102/492 (20%), Positives = 209/492 (42%), Gaps = 12/492 (2%)
Query: 114 RPEKSTLKL--LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171
RP S ++ L+ + + K+D ++SL E + + + +T S + R + +A
Sbjct: 70 RPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLA 129
Query: 172 NTLLQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230
+L + G +++ NS + G+ + + + ++M G D+ + ++
Sbjct: 130 LAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG 189
Query: 231 YYKIGDSEKVAALF--LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288
++ + + AL + K + D Y + + L K G AL M++
Sbjct: 190 LFQHNKASEAVALVERMVVKGCQPDLVT-----YGAVINGLCKRGEPDLALNLLNKMEKG 244
Query: 289 GILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKT 348
I D IY ++I + A +LF + E KG+ D L+ G
Sbjct: 245 KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDA 304
Query: 349 LDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLI-SQGCIPGQVTYASIIN 407
++ M + A+++ F K A K+Y++++ S+ C P V Y ++I
Sbjct: 305 SRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIK 364
Query: 408 AYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467
+C+ + +VF EM Q+G V Y++++ + + +A + +M + G P
Sbjct: 365 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHP 424
Query: 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFY 527
++ YN L+D N+ +++ M++R + D V+YTT+I A +A + + +
Sbjct: 425 DIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF 484
Query: 528 NEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA-LRD 586
+ G + M+ F + EE L +MK +G + Y++ + A LRD
Sbjct: 485 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544
Query: 587 AGLQMQAQWLQQ 598
A+ +++
Sbjct: 545 GDEAASAELIKE 556
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/411 (22%), Positives = 168/411 (40%), Gaps = 11/411 (2%)
Query: 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS-CVRARKFKIA 171
++P+ T L+ L Q K V+L E + PD T ++ C R
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 172 NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA- 230
N L ++ E ++ +N+ + G K ++ KM++ GI D Y ++
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295
Query: 231 --YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDM-KE 287
Y + D+ ++ + LE K+ D F+ L D+ K G+ EA K + +M K
Sbjct: 296 CNYGRWSDASRLLSDMLE-KNINPDLVFFNA-----LIDAFVKEGKLVEAEKLYDEMVKS 349
Query: 288 KGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEK 347
K D Y +LI F V+ E+F+E ++G++ + L+ + + +
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 409
Query: 348 TLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN 407
V + M + + +++G A+ V+E + + VTY ++I
Sbjct: 410 AQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIE 469
Query: 408 AYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467
A C+ +F + KG VV Y++M++ + + G +A L +MK G P
Sbjct: 470 ALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLP 529
Query: 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAR 518
N YN+L+ R + +L KEM D ++ V + + R
Sbjct: 530 NSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHDGR 580
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 88/205 (42%), Gaps = 6/205 (2%)
Query: 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442
A+ ++ ++ P V ++ +++A ++ + + +MQ G + YS +
Sbjct: 59 AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFIN 118
Query: 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502
+ + ++ A+ ++ KM G P++ NSL++ + + L +M P
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 178
Query: 503 DKVSYTTVISA---YNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559
D V++TT++ +N+A E V + G D G ++ K + + +
Sbjct: 179 DTVTFTTLVHGLFQHNKASE---AVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 560 KLLQDMKSEGTKLDERLYHSAMNAL 584
LL M+ + D +Y++ ++ L
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGL 260
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 147/320 (45%), Gaps = 44/320 (13%)
Query: 251 KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS--IYASLICSFASIT 308
K+++ S + +C G+ R F++L+ F MK+ DPS Y +++
Sbjct: 78 KIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDC--DPSQKAYVTVLAILVEEN 135
Query: 309 EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISC 368
++ LA + +K E G+ P V A L +
Sbjct: 136 QLNLAFKFYKNMREIGL--PPTV--------------------------ASLNV------ 161
Query: 369 AIVNGFSKRRGYW-AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQ 427
++ + G A +K++ ++ +GC P TY ++I+ CR +A+K+F EM +
Sbjct: 162 -LIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE 220
Query: 428 KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLR- 486
K VV Y+S++ + + +AM + +MK+KG EPNV+ Y+SLMD G K+ R
Sbjct: 221 KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMD--GLCKDGRS 278
Query: 487 -QVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIM 545
Q +L++ M R P+ V+YTT+I+ + ++ V+ + + G D + G +
Sbjct: 279 LQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKV 338
Query: 546 VGVFSKLSQIEELVKLLQDM 565
+ F +S+ E L +M
Sbjct: 339 ISGFCAISKFREAANFLDEM 358
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/428 (19%), Positives = 175/428 (40%), Gaps = 48/428 (11%)
Query: 151 DAHTCSRLVASCVRARKFKIANTLL-QVFITDGEIALLAFNSAMGGYNKLHMYYSTILVY 209
D + +V V A KFK A L+ ++ I + ++ S GY ++H + ++ V+
Sbjct: 50 DQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVF 109
Query: 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSL 269
KMK Y ++ + ++ F K+ + P + +L +L
Sbjct: 110 HKMKDFDCDPSQKAYVTVLAILV---EENQLNLAFKFYKNMREIGLPPTVASLNVLIKAL 166
Query: 270 GKSGRAFEA-LKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD 328
++ +A LK F +M ++G D Y +LI + A++LF E EK
Sbjct: 167 CRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD---- 222
Query: 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYE 388
C V+ Y +++NG + A++ E
Sbjct: 223 ---CAPTVVTYT----------------------------SLINGLCGSKNVDEAMRYLE 251
Query: 389 QLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 448
++ S+G P TY+S+++ C+ +A ++F M +G +V Y++++ K
Sbjct: 252 EMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311
Query: 449 RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYT 508
+I++A+ L+ +M +G +P+ +Y ++ R+ EM +TP+++++
Sbjct: 312 KIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWN 371
Query: 509 TVISAYNRAREFDMCVKF-------YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561
+ N +C + Y R G ++ +V K + ++ V+L
Sbjct: 372 IHVKTSNEVVR-GLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQL 430
Query: 562 LQDMKSEG 569
+ ++ ++G
Sbjct: 431 VDEIVTDG 438
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 106/248 (42%), Gaps = 36/248 (14%)
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
D++ MK +S+ I +I G+ + + +++V+ ++ C P Q Y +++
Sbjct: 72 DLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAIL 131
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV-AMYGKTGRIRDAMWLVAKMKAKGCEPN 468
+ A K + M++ G V + + ++ A+ G + + + +M +GC+P+
Sbjct: 132 VEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPD 191
Query: 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYN 528
+ Y +L+ R + + +KL+ EM + P V+YT++I+ ++ D
Sbjct: 192 SYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVD------- 244
Query: 529 EFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
E ++ L++MKS+G + + Y S M+ L G
Sbjct: 245 ----------------------------EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDG 276
Query: 589 LQMQAQWL 596
+QA L
Sbjct: 277 RSLQAMEL 284
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/343 (20%), Positives = 141/343 (41%), Gaps = 23/343 (6%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK-KWDSI 136
P K + + L ++++ Q LA+ +Y +++ P ++L +LI+ L ++ D+
Sbjct: 119 PSQKAYVTVLAILVEENQLN-LAFKFYKNMREIG-LPPTVASLNVLIKALCRNDGTVDAG 176
Query: 137 VSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI-TDGEIALLAFNSAMGG 195
+ + + PD++T L++ R + A L + D ++ + S + G
Sbjct: 177 LKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLING 236
Query: 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDST 255
+ E+MKS GI + Y +M+ K G S + LF +R
Sbjct: 237 LCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315
+ Y L L K + EA++ M +G+ D +Y +I F +I++ + A
Sbjct: 297 MVT---YTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAAN 353
Query: 316 LFKEAEEKGMLRD-----------PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD 364
E G+ + EV L Y + + SM++ + +
Sbjct: 354 FLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANY-----PSRAFTLYLSMRSRGISVEV 408
Query: 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN 407
++V K+ + AV++ +++++ GCIP + T+ +I
Sbjct: 409 ETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIG 451
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/150 (18%), Positives = 62/150 (41%), Gaps = 1/150 (0%)
Query: 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
++ MV + + A L+ +MK + C + I S+ +GR +++ +M
Sbjct: 53 SFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKM 112
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKL-SQ 554
+ P + +Y TV++ + ++ KFY R G A +++ +
Sbjct: 113 KDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGT 172
Query: 555 IEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
++ +K+ +M G D Y + ++ L
Sbjct: 173 VDAGLKIFLEMPKRGCDPDSYTYGTLISGL 202
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 137/285 (48%), Gaps = 1/285 (0%)
Query: 315 ELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGF 374
E+F E +G+ R L+ Y G E +L++++ MKN K+ S ++N
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINAC 221
Query: 375 SKRRGYWAAV-KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC 433
++ W + ++ ++ +G P VTY ++++A L +AE VF M G
Sbjct: 222 ARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPD 281
Query: 434 VVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWK 493
+ YS +V +GK R+ L+ +M + G P++ YN L++ + ++ ++++ ++
Sbjct: 282 LTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFH 341
Query: 494 EMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLS 553
+M+ TP+ +Y+ +++ + ++ +D + + E + + D A I++ VF +
Sbjct: 342 QMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGG 401
Query: 554 QIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598
+E+V L DM E + D Y + A GL A+ + Q
Sbjct: 402 YFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQ 446
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/458 (20%), Positives = 200/458 (43%), Gaps = 13/458 (2%)
Query: 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASC-VRARKFKIANTLLQVFIT--DGEIA--LL 187
W+ ++ L + + + PD T + L+++C +R + + VF T DG I L
Sbjct: 228 WEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG----LGDEAEMVFRTMNDGGIVPDLT 283
Query: 188 AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247
++ + + KL + +M S G + D Y ++EAY K G ++ +F +
Sbjct: 284 TYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343
Query: 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASI 307
++ TP + + Y +L + G+SGR + + F +MK D + Y LI F
Sbjct: 344 QA--AGCTP-NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEG 400
Query: 308 TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS 367
K LF + E+ + D E ++ + GL E +++ M + S
Sbjct: 401 GYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAY 460
Query: 368 CAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQ 427
++ F + Y A+ + + G P T+ S++ ++ R L ++E + +
Sbjct: 461 TGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVD 520
Query: 428 KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQ 487
G + +++ + Y + G+ +A+ M+ C+P+ +++ ++ A+ + +
Sbjct: 521 SGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDE 580
Query: 488 VEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG-GVIDRAIAGIMV 546
+ ++EM+ + P + Y +++ Y + +D + E N I + I ++
Sbjct: 581 CREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK 640
Query: 547 GVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
G + S + + +L + SEG L R Y++ ++AL
Sbjct: 641 GDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDAL 678
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 126/252 (50%), Gaps = 16/252 (6%)
Query: 343 GLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ-GCIPGQVT 401
G + + LD+ ++ KL ++D + F+ R + ++++++ + Q C P +
Sbjct: 90 GSIARCLDIFKN----KLSLNDF--ALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHI 143
Query: 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461
Y +I+ R L K +VF EM +G + V +Y++++ YG+ GR ++ L+ +MK
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203
Query: 462 AKGCEPNVWIYNSLMDMHGRAK-NLRQVEKLWKEMERRKVTPDKVSYTTVISA---YNRA 517
+ P++ YN++++ R + + L+ EM + PD V+Y T++SA
Sbjct: 204 NEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263
Query: 518 REFDMCVKFYNEFRMNGGVI-DRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERL 576
E +M + N+ GG++ D +V F KL ++E++ LL +M S G+ D
Sbjct: 264 DEAEMVFRTMND----GGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITS 319
Query: 577 YHSAMNALRDAG 588
Y+ + A +G
Sbjct: 320 YNVLLEAYAKSG 331
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/428 (20%), Positives = 163/428 (38%), Gaps = 75/428 (17%)
Query: 148 VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAFNSAMGGYNKLHMYYSTI 206
++PD T S LV + + R+ + LL + G + + ++N + Y K +
Sbjct: 278 IVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAM 337
Query: 207 LVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILC 266
V+ +M++AG ++ Y ++ + + G + V LFLE KS D Y IL
Sbjct: 338 GVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDP---DAATYNILI 394
Query: 267 DSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLI--C---------------------- 302
+ G+ G E + F DM E+ I D Y +I C
Sbjct: 395 EVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIV 454
Query: 303 ----SFASITEVKLAEELFKEA-------EEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351
++ + E L++EA E G E L+ + GLV+++ +
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAI 514
Query: 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411
+ + ++ + + A + + + + AVK Y + C P + T ++++ Y
Sbjct: 515 LSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSF 574
Query: 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD------------------- 452
L + + F EM+ ++ Y M+A+YGKT R D
Sbjct: 575 ARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQV 634
Query: 453 ------------AMWLVA-----KMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
+ W + K+ ++GC + YN+L+D + ++ E
Sbjct: 635 IGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEA 694
Query: 496 ERRKVTPD 503
+R + P+
Sbjct: 695 TKRGLFPE 702
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/326 (19%), Positives = 142/326 (43%), Gaps = 21/326 (6%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P+ +T +LI + + +V+L D N+ PD T ++ +C + + A +
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
Query: 175 LQVFITDGEI--ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232
LQ ++T +I + A+ + + + +Y ++ + M G + ++ ++
Sbjct: 445 LQ-YMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFA 503
Query: 233 KIGDSEKVAALFLECKSRKLDS-TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL 291
+ G ++ A+ SR +DS P + + ++ + G+ EA+K + DM++
Sbjct: 504 RGGLVKESEAIL----SRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCD 559
Query: 292 EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEV---CLKLVLMYIEEGLVEKT 348
D +++ ++ V E F+E + +L P + C+ L + G E+
Sbjct: 560 PDERTLEAVLSVYSFARLVDECREQFEEMKASDIL--PSIMCYCMMLAVY----GKTERW 613
Query: 349 LDV---VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK-VYEQLISQGCIPGQVTYAS 404
DV +E M + ++ + ++ G W V+ V ++L S+GC G Y +
Sbjct: 614 DDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNA 673
Query: 405 IINAYCRIALYSKAEKVFIEMQQKGF 430
+++A + +A +V E ++G
Sbjct: 674 LLDALWWLGQKERAARVLNEATKRGL 699
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 103/441 (23%), Positives = 186/441 (42%), Gaps = 59/441 (13%)
Query: 77 VPDAKKFDSFLHGMLKDPQTQELAYDY----YNEAKKLPEFRPEKSTLKLLIRYLVQSKK 132
VPD F+S + + K+ + + + + +E LP RP T L+++ +
Sbjct: 249 VPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLP--RPNSITYNLMLKGFCKVGL 306
Query: 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI--ALLAFN 190
+ +L E + + L + + + VR KF A T+L+ +TD I ++ ++N
Sbjct: 307 LEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQ-MTDKGIGPSIYSYN 365
Query: 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250
M G KL M + MK G+ D+ Y ++ Y +G + +L E
Sbjct: 366 ILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRN 425
Query: 251 KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310
++ + IL SL K GR EA
Sbjct: 426 NCLPNAYTCN---ILLHSLWKMGRISEA-------------------------------- 450
Query: 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI 370
EEL ++ EKG D C +V G ++K +++V+ M+ S A+
Sbjct: 451 ---EELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG-------SAAL 500
Query: 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
N + G V + LI C+P +TY++++N C+ +++A+ +F EM +
Sbjct: 501 GNLGNSYIGL-----VDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKL 555
Query: 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490
VAY+ + + K G+I A ++ M+ KGC ++ YNSL+ G + ++
Sbjct: 556 QPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHG 615
Query: 491 LWKEMERRKVTPDKVSYTTVI 511
L EM+ + ++P+ +Y T I
Sbjct: 616 LMDEMKEKGISPNICTYNTAI 636
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 162/386 (41%), Gaps = 40/386 (10%)
Query: 227 IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMK 286
++ + K +K F +SR ++ P S ++Y +L +S K R ++DM
Sbjct: 81 VVSIFAKSNHIDKAFPQFQLVRSRFPENKP-SVYLYNLLLESCIKERRVEFVSWLYKDMV 139
Query: 287 EKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVE 346
GI + LI + + V A ELF E EKG + LV Y + GL +
Sbjct: 140 LCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTD 199
Query: 347 KTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASII 406
K L+++ +M++ + + I IV+ F + + K+ E++ +G +P VT+ S I
Sbjct: 200 KGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRI 259
Query: 407 NAYCRIALYSKAEKVFIEMQQKGF----DKCVVAYSSMVAMYGKTGRIRDA--------- 453
+A C+ A ++F +M+ + + Y+ M+ + K G + DA
Sbjct: 260 SALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRE 319
Query: 454 -----------MWL---------------VAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQ 487
+WL + +M KG P+++ YN LMD + L
Sbjct: 320 NDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSD 379
Query: 488 VEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547
+ + M+R V PD V+Y ++ Y + D E N + + I++
Sbjct: 380 AKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLH 439
Query: 548 VFSKLSQIEELVKLLQDMKSEGTKLD 573
K+ +I E +LL+ M +G LD
Sbjct: 440 SLWKMGRISEAEELLRKMNEKGYGLD 465
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/217 (18%), Positives = 97/217 (44%), Gaps = 4/217 (1%)
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
AA ++++++ +GC P + T+ ++ YC+ L K ++ M+ G V Y+++V
Sbjct: 165 AARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIV 224
Query: 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501
+ + + GR D+ +V KM+ +G P++ +NS + + + +++ +ME +
Sbjct: 225 SSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYL 284
Query: 502 ----PDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEE 557
P+ ++Y ++ + + + + R N + I + + + E
Sbjct: 285 GLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIE 344
Query: 558 LVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQ 594
+L+ M +G Y+ M+ L G+ A+
Sbjct: 345 AETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAK 381
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 90/432 (20%), Positives = 156/432 (36%), Gaps = 75/432 (17%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P+ T L+ K D+ SL ++ N LP+A+TC+ L+ S + + A L
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEEL 453
Query: 175 LQV--------------FITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD 220
L+ I DG + A+ + ++ S L G+V D
Sbjct: 454 LRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDD 513
Query: 221 S----GC------YCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLG 270
S C Y ++ K G + LF E KL + Y I
Sbjct: 514 SLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVA---YNIFIHHFC 570
Query: 271 KSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE 330
K G+ A + +DM++KG + Y SLI ++ L E +EKG+ P
Sbjct: 571 KQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGI--SPN 628
Query: 331 VCL-KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389
+C + Y+ EG EK D A + ++
Sbjct: 629 ICTYNTAIQYLCEG--EKVED--------------------------------ATNLLDE 654
Query: 390 LISQGCIPGQVTYASIINAYCRIALYSKAEKVF-----IEMQQKGFDKCVVAYSSMVAMY 444
++ + P ++ +I A+C++ + A++VF I Q++G YS M
Sbjct: 655 MMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGL------YSLMFNEL 708
Query: 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504
G++ A L+ + +G E ++Y L++ + L + +M R D
Sbjct: 709 LAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDP 768
Query: 505 VSYTTVISAYNR 516
+ VI +
Sbjct: 769 AALMPVIDGLGK 780
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,346,565
Number of Sequences: 539616
Number of extensions: 8337999
Number of successful extensions: 29287
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 22556
Number of HSP's gapped (non-prelim): 2601
length of query: 603
length of database: 191,569,459
effective HSP length: 123
effective length of query: 480
effective length of database: 125,196,691
effective search space: 60094411680
effective search space used: 60094411680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)