Query 007461
Match_columns 603
No_of_seqs 727 out of 3238
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 23:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.8E-70 6.1E-75 581.9 66.1 516 77-602 367-908 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.3E-69 7.2E-74 573.7 65.3 493 100-601 356-874 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.4E-69 3.1E-74 588.9 56.1 500 76-600 148-683 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 7E-69 1.5E-73 583.5 58.2 503 77-600 48-651 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-64 2.3E-69 537.8 56.4 473 79-571 86-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-62 3.1E-67 521.6 53.6 469 114-602 84-556 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-31 6.8E-36 295.7 65.8 501 83-602 366-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.6E-30 1.2E-34 285.7 65.8 500 83-600 332-863 (899)
9 PRK11447 cellulose synthase su 100.0 1E-22 2.3E-27 227.5 65.2 511 76-600 57-737 (1157)
10 PRK11447 cellulose synthase su 100.0 5.5E-22 1.2E-26 221.7 65.3 500 90-601 37-698 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 8.3E-22 1.8E-26 186.8 36.1 429 84-532 52-484 (966)
12 PRK09782 bacteriophage N4 rece 99.9 4.2E-19 9.1E-24 189.7 59.4 495 83-600 45-703 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.8E-21 3.8E-26 184.6 35.8 430 120-568 51-485 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 9.6E-19 2.1E-23 183.9 53.3 431 119-568 129-571 (615)
15 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.6E-25 188.4 35.1 301 197-539 46-353 (389)
16 PRK11788 tetratricopeptide rep 99.9 1.9E-20 4.1E-25 187.1 35.7 298 163-469 46-353 (389)
17 TIGR00990 3a0801s09 mitochondr 99.9 5.6E-18 1.2E-22 178.1 51.0 427 84-533 131-571 (615)
18 PRK09782 bacteriophage N4 rece 99.9 8.4E-17 1.8E-21 172.2 59.7 430 152-599 181-736 (987)
19 PRK15174 Vi polysaccharide exp 99.9 4.1E-18 8.9E-23 178.3 46.9 334 119-463 44-381 (656)
20 PRK10049 pgaA outer membrane p 99.9 5.6E-18 1.2E-22 181.3 47.4 410 83-505 18-461 (765)
21 PRK15174 Vi polysaccharide exp 99.9 3.9E-18 8.4E-23 178.6 45.1 333 83-429 45-382 (656)
22 PRK10049 pgaA outer membrane p 99.9 2E-17 4.3E-22 177.0 50.5 167 114-287 12-178 (765)
23 PRK14574 hmsH outer membrane p 99.9 5.5E-16 1.2E-20 162.6 55.3 453 90-580 44-523 (822)
24 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.6E-20 160.2 52.9 445 117-600 34-510 (822)
25 KOG2002 TPR-containing nuclear 99.8 1.2E-15 2.5E-20 153.2 47.4 493 92-598 176-740 (1018)
26 KOG2002 TPR-containing nuclear 99.8 2E-15 4.4E-20 151.5 44.9 477 93-581 248-758 (1018)
27 KOG0495 HAT repeat protein [RN 99.8 6E-13 1.3E-17 128.2 52.2 480 102-602 367-879 (913)
28 KOG2076 RNA polymerase III tra 99.8 1.7E-13 3.7E-18 137.0 48.5 364 89-460 148-552 (895)
29 KOG4422 Uncharacterized conser 99.8 4.2E-14 9E-19 129.4 38.3 421 152-598 116-585 (625)
30 KOG2003 TPR repeat-containing 99.8 1.3E-14 2.8E-19 133.5 35.1 462 119-590 203-710 (840)
31 KOG4422 Uncharacterized conser 99.8 3.5E-13 7.7E-18 123.4 43.8 238 185-429 206-463 (625)
32 KOG2076 RNA polymerase III tra 99.7 1.4E-12 3.1E-17 130.6 48.9 475 122-600 144-692 (895)
33 KOG0495 HAT repeat protein [RN 99.7 6.5E-12 1.4E-16 121.2 48.1 449 100-568 395-880 (913)
34 KOG1915 Cell cycle control pro 99.7 2.3E-11 5.1E-16 113.1 48.7 450 114-581 70-547 (677)
35 KOG1915 Cell cycle control pro 99.7 1.8E-11 3.9E-16 113.9 44.6 437 151-601 72-534 (677)
36 KOG2003 TPR repeat-containing 99.7 2.1E-13 4.6E-18 125.6 30.9 185 410-600 501-686 (840)
37 PRK10747 putative protoheme IX 99.6 3.7E-12 8E-17 126.0 35.9 284 272-567 97-389 (398)
38 KOG0547 Translocase of outer m 99.6 9.5E-12 2.1E-16 116.2 35.6 219 340-566 337-564 (606)
39 TIGR00540 hemY_coli hemY prote 99.6 3.8E-12 8.1E-17 126.7 35.2 289 271-567 96-398 (409)
40 TIGR00540 hemY_coli hemY prote 99.6 2.7E-12 5.8E-17 127.7 34.1 288 306-600 96-396 (409)
41 PRK10747 putative protoheme IX 99.6 4.4E-12 9.5E-17 125.5 34.7 282 307-599 97-386 (398)
42 COG2956 Predicted N-acetylgluc 99.6 4.6E-12 1E-16 112.2 29.9 291 166-497 49-346 (389)
43 KOG1155 Anaphase-promoting com 99.6 1.9E-10 4.1E-15 107.0 40.6 382 184-586 162-552 (559)
44 PF13429 TPR_15: Tetratricopep 99.6 9.9E-15 2.1E-19 137.9 12.5 259 122-389 13-273 (280)
45 KOG0547 Translocase of outer m 99.6 2.3E-11 5.1E-16 113.6 33.5 415 84-532 119-565 (606)
46 KOG4318 Bicoid mRNA stability 99.6 1.3E-11 2.9E-16 123.1 33.5 455 112-601 20-592 (1088)
47 PF13429 TPR_15: Tetratricopep 99.6 1.7E-14 3.6E-19 136.3 12.8 224 334-565 49-274 (280)
48 COG2956 Predicted N-acetylgluc 99.6 2E-11 4.3E-16 108.3 29.1 225 130-357 48-277 (389)
49 COG3071 HemY Uncharacterized e 99.5 1.7E-10 3.6E-15 105.7 33.9 287 272-568 97-390 (400)
50 KOG1155 Anaphase-promoting com 99.5 1.9E-09 4.2E-14 100.5 40.8 362 215-596 158-529 (559)
51 KOG2047 mRNA splicing factor [ 99.5 4E-08 8.7E-13 95.5 51.0 500 83-598 141-718 (835)
52 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.9E-15 104.9 33.2 284 306-599 96-386 (400)
53 KOG1126 DNA-binding cell divis 99.5 8.9E-12 1.9E-16 121.2 25.4 282 274-568 334-620 (638)
54 KOG1126 DNA-binding cell divis 99.5 1.8E-11 4E-16 119.0 26.5 198 328-534 420-621 (638)
55 KOG1156 N-terminal acetyltrans 99.5 1.4E-08 3E-13 98.9 45.5 454 128-600 18-508 (700)
56 KOG4318 Bicoid mRNA stability 99.5 7.4E-11 1.6E-15 118.0 30.0 434 138-601 11-555 (1088)
57 KOG1173 Anaphase-promoting com 99.5 2.1E-09 4.5E-14 102.8 37.6 285 293-585 243-533 (611)
58 KOG3785 Uncharacterized conser 99.5 1.8E-09 3.9E-14 97.1 34.6 459 87-584 29-504 (557)
59 KOG1156 N-terminal acetyltrans 99.4 3E-08 6.6E-13 96.6 42.3 423 92-532 53-510 (700)
60 KOG2047 mRNA splicing factor [ 99.4 2.5E-07 5.4E-12 90.2 48.1 501 83-600 30-612 (835)
61 PRK12370 invasion protein regu 99.4 6.3E-10 1.4E-14 115.2 31.1 251 167-429 276-536 (553)
62 PF12569 NARP1: NMDA receptor- 99.4 6E-08 1.3E-12 97.1 43.0 293 89-392 13-333 (517)
63 KOG3785 Uncharacterized conser 99.4 1.1E-08 2.4E-13 92.2 33.7 463 83-589 59-536 (557)
64 PRK12370 invasion protein regu 99.4 8.6E-10 1.9E-14 114.2 29.1 267 115-394 254-536 (553)
65 TIGR02521 type_IV_pilW type IV 99.4 6E-10 1.3E-14 102.6 25.4 199 117-321 31-230 (234)
66 TIGR02521 type_IV_pilW type IV 99.3 1.2E-09 2.6E-14 100.6 26.4 198 152-354 31-228 (234)
67 KOG1173 Anaphase-promoting com 99.3 3.6E-08 7.7E-13 94.6 35.8 469 115-599 14-514 (611)
68 PF12569 NARP1: NMDA receptor- 99.3 2.1E-07 4.5E-12 93.3 42.6 294 123-427 10-333 (517)
69 KOG2376 Signal recognition par 99.3 1.4E-07 3.1E-12 91.0 39.1 448 125-600 20-517 (652)
70 KOG4162 Predicted calmodulin-b 99.3 7.7E-07 1.7E-11 88.8 42.9 202 185-390 322-539 (799)
71 KOG1129 TPR repeat-containing 99.3 4.7E-10 1E-14 99.7 18.3 228 157-392 228-457 (478)
72 PF13041 PPR_2: PPR repeat fam 99.3 1.9E-11 4.1E-16 80.6 6.6 48 467-514 1-48 (50)
73 KOG4162 Predicted calmodulin-b 99.3 1.3E-06 2.8E-11 87.3 42.7 377 215-599 317-779 (799)
74 PF13041 PPR_2: PPR repeat fam 99.2 2.1E-11 4.5E-16 80.4 6.4 50 432-481 1-50 (50)
75 KOG1174 Anaphase-promoting com 99.2 2.3E-07 5E-12 85.6 33.9 300 290-598 190-495 (564)
76 KOG1840 Kinesin light chain [C 99.2 1.1E-08 2.4E-13 100.9 26.5 198 369-566 246-477 (508)
77 KOG2376 Signal recognition par 99.2 2.9E-07 6.2E-12 89.0 34.5 416 157-601 17-485 (652)
78 KOG1129 TPR repeat-containing 99.2 2.4E-09 5.3E-14 95.2 19.2 233 121-361 227-461 (478)
79 KOG1174 Anaphase-promoting com 99.2 3.7E-06 8.1E-11 77.9 38.0 266 258-533 231-500 (564)
80 PRK11189 lipoprotein NlpI; Pro 99.2 6.6E-08 1.4E-12 91.6 27.9 216 98-324 43-266 (296)
81 COG3063 PilF Tfp pilus assembl 99.1 5.5E-08 1.2E-12 82.9 23.4 199 119-323 37-236 (250)
82 cd05804 StaR_like StaR_like; a 99.1 4.1E-07 8.8E-12 89.7 33.4 192 94-288 20-215 (355)
83 KOG1840 Kinesin light chain [C 99.1 5.7E-08 1.2E-12 96.0 26.7 249 185-461 198-477 (508)
84 PRK11189 lipoprotein NlpI; Pro 99.1 8.3E-08 1.8E-12 90.9 25.7 219 131-360 40-267 (296)
85 COG3063 PilF Tfp pilus assembl 99.1 2E-07 4.4E-12 79.5 23.8 195 191-392 40-235 (250)
86 KOG4340 Uncharacterized conser 99.1 3.2E-07 6.9E-12 81.0 25.8 352 120-496 13-373 (459)
87 cd05804 StaR_like StaR_like; a 99.0 1.7E-06 3.7E-11 85.3 33.6 71 120-190 9-81 (355)
88 KOG1127 TPR repeat-containing 99.0 7.2E-06 1.6E-10 84.3 37.4 455 119-600 494-993 (1238)
89 KOG0548 Molecular co-chaperone 99.0 4.1E-06 8.9E-11 80.5 33.2 399 89-534 11-456 (539)
90 KOG0548 Molecular co-chaperone 99.0 8.2E-06 1.8E-10 78.5 33.7 401 80-516 36-471 (539)
91 KOG3617 WD40 and TPR repeat-co 99.0 1.2E-05 2.6E-10 80.9 35.0 405 116-592 725-1189(1416)
92 KOG3616 Selective LIM binding 99.0 1.5E-06 3.3E-11 85.9 28.3 169 336-529 739-907 (1636)
93 KOG3616 Selective LIM binding 98.9 2.9E-05 6.2E-10 77.3 36.3 432 92-598 456-932 (1636)
94 PRK04841 transcriptional regul 98.9 1.2E-05 2.7E-10 89.9 38.6 338 196-533 384-760 (903)
95 KOG4340 Uncharacterized conser 98.9 1E-06 2.2E-11 78.0 22.6 289 191-494 15-335 (459)
96 KOG0985 Vesicle coat protein c 98.9 0.00015 3.3E-09 75.0 44.2 77 207-285 968-1046(1666)
97 KOG3617 WD40 and TPR repeat-co 98.9 3.5E-05 7.6E-10 77.7 35.5 303 115-461 755-1107(1416)
98 KOG1127 TPR repeat-containing 98.9 1.8E-05 4E-10 81.4 34.3 375 96-494 507-909 (1238)
99 PRK04841 transcriptional regul 98.9 1.3E-05 2.9E-10 89.6 37.4 297 303-599 418-756 (903)
100 KOG0985 Vesicle coat protein c 98.8 0.00024 5.2E-09 73.6 43.2 476 86-599 611-1219(1666)
101 KOG1914 mRNA cleavage and poly 98.8 0.00014 3.1E-09 70.1 40.3 186 380-568 309-501 (656)
102 PLN02789 farnesyltranstransfer 98.8 9.5E-06 2.1E-10 76.8 26.6 189 90-287 47-249 (320)
103 KOG1914 mRNA cleavage and poly 98.8 0.00021 4.6E-09 69.0 42.7 152 380-533 347-501 (656)
104 KOG0624 dsRNA-activated protei 98.8 0.00013 2.7E-09 66.4 37.0 313 156-498 42-370 (504)
105 KOG1125 TPR repeat-containing 98.8 1.7E-06 3.6E-11 83.8 21.0 222 163-389 296-523 (579)
106 PF04733 Coatomer_E: Coatomer 98.8 8.2E-07 1.8E-11 82.9 18.3 255 302-574 9-269 (290)
107 PF04733 Coatomer_E: Coatomer 98.7 4.2E-07 9.2E-12 84.8 15.9 151 372-533 110-265 (290)
108 KOG1125 TPR repeat-containing 98.7 3.9E-06 8.4E-11 81.4 22.2 255 193-457 292-565 (579)
109 KOG1128 Uncharacterized conser 98.7 1.4E-06 2.9E-11 86.7 18.6 221 326-568 395-616 (777)
110 PLN02789 farnesyltranstransfer 98.7 2.4E-05 5.1E-10 74.2 26.4 226 127-360 47-304 (320)
111 TIGR03302 OM_YfiO outer membra 98.7 4.9E-06 1.1E-10 76.5 21.1 184 83-287 36-231 (235)
112 KOG1070 rRNA processing protei 98.7 1.7E-05 3.7E-10 84.5 26.7 238 175-420 1447-1692(1710)
113 KOG1070 rRNA processing protei 98.6 2.6E-05 5.6E-10 83.2 26.7 226 364-595 1458-1692(1710)
114 PF12854 PPR_1: PPR repeat 98.6 7.1E-08 1.5E-12 56.8 4.1 34 215-248 1-34 (34)
115 PF12854 PPR_1: PPR repeat 98.6 6.8E-08 1.5E-12 56.9 3.9 28 466-493 4-31 (34)
116 COG4783 Putative Zn-dependent 98.6 1.4E-05 3.1E-10 76.1 21.1 144 122-288 311-454 (484)
117 COG5010 TadD Flp pilus assembl 98.6 1.3E-05 2.9E-10 70.2 18.8 164 116-286 66-229 (257)
118 COG5010 TadD Flp pilus assembl 98.5 1E-05 2.2E-10 71.0 17.5 154 88-246 74-227 (257)
119 PRK15179 Vi polysaccharide bio 98.5 4.1E-05 9E-10 80.1 25.3 135 114-250 83-217 (694)
120 PRK10370 formate-dependent nit 98.5 1.9E-05 4.1E-10 69.6 19.2 156 124-297 23-181 (198)
121 TIGR03302 OM_YfiO outer membra 98.5 2.1E-05 4.5E-10 72.3 20.4 99 115-214 31-143 (235)
122 KOG1128 Uncharacterized conser 98.5 1.3E-05 2.7E-10 80.0 19.2 221 218-462 395-615 (777)
123 PRK15359 type III secretion sy 98.5 1.1E-05 2.4E-10 67.1 16.0 110 101-216 13-122 (144)
124 KOG0624 dsRNA-activated protei 98.5 0.00099 2.1E-08 60.8 33.5 297 123-429 44-371 (504)
125 PRK10370 formate-dependent nit 98.4 1.4E-05 3.1E-10 70.3 16.3 123 130-254 52-177 (198)
126 PRK14720 transcript cleavage f 98.4 0.00016 3.4E-09 76.7 26.4 168 116-323 30-198 (906)
127 PRK14720 transcript cleavage f 98.4 0.00014 2.9E-09 77.1 24.9 166 81-288 32-198 (906)
128 KOG3081 Vesicle coat complex C 98.4 0.00027 5.8E-09 62.2 22.5 250 302-568 16-271 (299)
129 PRK15179 Vi polysaccharide bio 98.3 4.4E-05 9.6E-10 79.9 19.8 182 88-288 36-217 (694)
130 KOG3081 Vesicle coat complex C 98.3 0.00084 1.8E-08 59.2 23.8 172 351-533 95-271 (299)
131 TIGR02552 LcrH_SycD type III s 98.3 3.7E-05 8E-10 63.6 14.7 98 117-215 17-114 (135)
132 KOG2053 Mitochondrial inherita 98.3 0.0078 1.7E-07 62.3 47.8 93 473-567 440-535 (932)
133 PRK15359 type III secretion sy 98.3 3.9E-05 8.5E-10 63.8 14.5 97 155-252 27-123 (144)
134 COG4783 Putative Zn-dependent 98.3 0.00051 1.1E-08 65.9 22.8 161 401-584 309-472 (484)
135 TIGR02552 LcrH_SycD type III s 98.2 5.5E-05 1.2E-09 62.5 13.3 97 154-251 19-115 (135)
136 KOG3060 Uncharacterized conser 98.1 0.0046 1E-07 54.3 25.2 186 342-533 25-220 (289)
137 PF09976 TPR_21: Tetratricopep 98.1 0.00014 2.9E-09 60.9 14.4 115 165-284 24-143 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.9E-09 70.5 14.9 127 153-287 170-296 (395)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00036 7.8E-09 67.6 17.8 122 438-566 173-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.0 7.1E-06 1.5E-10 49.2 4.1 33 261-293 2-34 (35)
141 KOG3060 Uncharacterized conser 98.0 0.0067 1.4E-07 53.3 23.3 162 332-498 55-220 (289)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00045 9.7E-09 57.7 15.6 115 447-564 24-143 (145)
143 KOG2053 Mitochondrial inherita 98.0 0.029 6.2E-07 58.3 50.7 488 92-601 21-606 (932)
144 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 48.5 4.1 31 437-467 3-33 (35)
145 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 47.9 4.1 33 260-292 2-34 (34)
146 KOG2041 WD40 repeat protein [G 98.0 0.011 2.5E-07 59.2 26.4 120 114-244 689-819 (1189)
147 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.2E-10 47.4 4.2 32 436-467 3-34 (34)
148 KOG2041 WD40 repeat protein [G 97.9 0.0089 1.9E-07 60.0 24.6 208 149-390 689-904 (1189)
149 PF10037 MRP-S27: Mitochondria 97.9 0.00028 6.1E-09 68.6 13.9 122 361-482 63-186 (429)
150 cd00189 TPR Tetratricopeptide 97.8 0.00041 8.8E-09 52.9 11.1 92 121-213 4-95 (100)
151 PF10037 MRP-S27: Mitochondria 97.8 0.0006 1.3E-08 66.4 13.5 122 291-412 63-186 (429)
152 cd00189 TPR Tetratricopeptide 97.7 0.00056 1.2E-08 52.0 11.2 91 157-248 5-95 (100)
153 PF08579 RPM2: Mitochondrial r 97.7 0.00078 1.7E-08 51.1 10.5 71 445-515 36-115 (120)
154 PF01535 PPR: PPR repeat; Int 97.7 5.9E-05 1.3E-09 43.6 3.4 29 261-289 2-30 (31)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0017 3.6E-08 52.1 13.2 97 119-215 4-105 (119)
156 PF08579 RPM2: Mitochondrial r 97.7 0.00087 1.9E-08 50.8 10.2 78 510-587 31-117 (120)
157 PF01535 PPR: PPR repeat; Int 97.7 7E-05 1.5E-09 43.2 3.6 28 436-463 2-29 (31)
158 PF05843 Suf: Suppressor of fo 97.6 0.001 2.3E-08 62.3 13.3 132 154-287 3-135 (280)
159 PRK02603 photosystem I assembl 97.6 0.0034 7.3E-08 54.3 15.4 91 116-206 34-126 (172)
160 PLN03088 SGT1, suppressor of 97.6 0.0017 3.7E-08 63.2 14.7 91 124-215 9-99 (356)
161 PRK10866 outer membrane biogen 97.6 0.051 1.1E-06 49.7 23.2 55 336-390 182-238 (243)
162 COG4700 Uncharacterized protei 97.6 0.0083 1.8E-07 50.0 15.9 101 150-250 87-189 (251)
163 CHL00033 ycf3 photosystem I as 97.6 0.0015 3.3E-08 56.2 12.5 82 116-197 34-117 (168)
164 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.002 4.4E-08 51.6 12.5 97 191-288 7-105 (119)
165 PRK15363 pathogenicity island 97.6 0.0024 5.1E-08 52.5 12.5 88 162-250 45-132 (157)
166 PF12895 Apc3: Anaphase-promot 97.6 0.00015 3.3E-09 53.9 5.3 79 518-599 3-83 (84)
167 PF05843 Suf: Suppressor of fo 97.6 0.0025 5.5E-08 59.7 14.6 145 365-514 2-150 (280)
168 PF14938 SNAP: Soluble NSF att 97.5 0.057 1.2E-06 50.9 23.4 56 266-322 121-183 (282)
169 PF06239 ECSIT: Evolutionarily 97.5 0.003 6.6E-08 54.4 12.9 87 433-519 46-153 (228)
170 PRK15363 pathogenicity island 97.5 0.0022 4.9E-08 52.6 11.4 98 117-215 35-132 (157)
171 COG4235 Cytochrome c biogenesi 97.4 0.0089 1.9E-07 54.4 15.7 123 173-302 143-268 (287)
172 PRK02603 photosystem I assembl 97.4 0.0063 1.4E-07 52.6 14.6 89 434-524 35-126 (172)
173 PF14938 SNAP: Soluble NSF att 97.4 0.069 1.5E-06 50.3 22.7 123 408-530 123-263 (282)
174 KOG0553 TPR repeat-containing 97.4 0.002 4.3E-08 58.1 10.8 94 91-188 92-185 (304)
175 PF12895 Apc3: Anaphase-promot 97.4 0.00044 9.6E-09 51.4 5.7 78 166-245 3-82 (84)
176 KOG1538 Uncharacterized conser 97.3 0.073 1.6E-06 53.3 21.5 55 469-532 747-801 (1081)
177 PRK10866 outer membrane biogen 97.3 0.077 1.7E-06 48.5 20.9 55 440-494 181-237 (243)
178 PF04840 Vps16_C: Vps16, C-ter 97.3 0.16 3.4E-06 48.4 27.8 111 435-565 178-288 (319)
179 PLN03088 SGT1, suppressor of 97.3 0.0043 9.2E-08 60.5 13.3 102 87-192 9-110 (356)
180 CHL00033 ycf3 photosystem I as 97.3 0.0058 1.3E-07 52.6 12.4 93 470-563 36-137 (168)
181 KOG1538 Uncharacterized conser 97.3 0.071 1.5E-06 53.4 20.5 40 204-246 618-657 (1081)
182 KOG0553 TPR repeat-containing 97.3 0.0042 9.2E-08 56.1 11.2 96 127-225 91-186 (304)
183 PRK10153 DNA-binding transcrip 97.2 0.031 6.6E-07 57.1 18.7 136 396-534 334-483 (517)
184 PF06239 ECSIT: Evolutionarily 97.2 0.0098 2.1E-07 51.4 12.6 89 466-554 44-153 (228)
185 PRK10153 DNA-binding transcrip 97.2 0.023 5.1E-07 58.0 17.4 63 260-324 421-483 (517)
186 COG4235 Cytochrome c biogenesi 97.2 0.025 5.5E-07 51.5 15.5 101 114-215 153-256 (287)
187 PF12688 TPR_5: Tetratrico pep 97.2 0.018 3.8E-07 45.6 12.8 106 123-232 7-117 (120)
188 COG4700 Uncharacterized protei 97.2 0.11 2.4E-06 43.5 18.1 130 396-529 86-218 (251)
189 PF14559 TPR_19: Tetratricopep 97.2 0.0016 3.5E-08 46.0 6.5 49 166-214 5-53 (68)
190 PF12688 TPR_5: Tetratrico pep 97.1 0.031 6.7E-07 44.3 13.9 94 192-286 7-102 (120)
191 PF13432 TPR_16: Tetratricopep 97.1 0.0025 5.4E-08 44.5 7.1 54 161-214 6-59 (65)
192 KOG2796 Uncharacterized conser 97.1 0.18 3.9E-06 44.8 22.7 130 262-392 180-314 (366)
193 PF13525 YfiO: Outer membrane 97.1 0.18 3.9E-06 44.8 20.0 45 440-486 147-195 (203)
194 PF14559 TPR_19: Tetratricopep 97.1 0.0014 3.1E-08 46.3 5.4 57 128-185 2-58 (68)
195 PF13432 TPR_16: Tetratricopep 97.1 0.0021 4.7E-08 44.8 6.3 60 123-183 3-62 (65)
196 PF07079 DUF1347: Protein of u 97.1 0.32 7E-06 46.9 40.7 439 127-581 16-532 (549)
197 PF13414 TPR_11: TPR repeat; P 97.0 0.0033 7.1E-08 44.5 7.1 62 153-214 4-66 (69)
198 KOG2280 Vacuolar assembly/sort 97.0 0.49 1.1E-05 48.7 26.8 330 190-564 441-795 (829)
199 KOG1258 mRNA processing protei 97.0 0.43 9.3E-06 47.9 34.6 118 169-288 62-180 (577)
200 PF13414 TPR_11: TPR repeat; P 97.0 0.0031 6.7E-08 44.7 6.8 65 116-181 2-67 (69)
201 KOG0550 Molecular chaperone (D 97.0 0.34 7.4E-06 46.1 23.8 52 410-461 260-314 (486)
202 KOG1130 Predicted G-alpha GTPa 97.0 0.032 6.9E-07 52.7 14.4 129 297-425 198-341 (639)
203 PF13525 YfiO: Outer membrane 97.0 0.057 1.2E-06 48.0 15.9 59 124-182 12-72 (203)
204 KOG2796 Uncharacterized conser 96.9 0.28 6E-06 43.7 20.9 133 402-535 180-317 (366)
205 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.53 1.1E-05 45.4 36.3 414 102-532 30-530 (660)
206 KOG1130 Predicted G-alpha GTPa 96.8 0.015 3.3E-07 54.7 10.7 132 330-461 196-342 (639)
207 KOG2114 Vacuolar assembly/sort 96.7 0.94 2E-05 47.4 24.1 178 118-320 335-516 (933)
208 PRK10803 tol-pal system protei 96.7 0.039 8.5E-07 50.9 13.1 100 188-288 145-246 (263)
209 PF13281 DUF4071: Domain of un 96.7 0.49 1.1E-05 45.6 20.5 162 405-568 147-334 (374)
210 PF04840 Vps16_C: Vps16, C-ter 96.7 0.6 1.3E-05 44.5 31.0 43 120-171 3-45 (319)
211 PRK10803 tol-pal system protei 96.7 0.035 7.7E-07 51.1 12.6 101 223-324 145-247 (263)
212 PF13281 DUF4071: Domain of un 96.7 0.44 9.6E-06 45.9 19.9 80 225-304 145-227 (374)
213 KOG0550 Molecular chaperone (D 96.6 0.7 1.5E-05 44.2 23.4 122 229-358 177-316 (486)
214 KOG2114 Vacuolar assembly/sort 96.6 1.1 2.3E-05 47.0 23.0 146 121-286 372-517 (933)
215 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.79 1.7E-05 44.3 35.9 430 138-584 30-545 (660)
216 PF13371 TPR_9: Tetratricopept 96.5 0.019 4E-07 41.1 7.6 53 162-214 5-57 (73)
217 KOG2280 Vacuolar assembly/sort 96.5 1.3 2.9E-05 45.7 26.6 347 143-529 423-795 (829)
218 PF03704 BTAD: Bacterial trans 96.4 0.024 5.3E-07 47.3 9.2 70 154-223 64-138 (146)
219 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.22 4.7E-06 48.7 16.2 66 77-146 71-141 (453)
220 COG3898 Uncharacterized membra 96.4 0.92 2E-05 43.0 31.7 282 165-463 97-392 (531)
221 PF13371 TPR_9: Tetratricopept 96.3 0.024 5.1E-07 40.6 7.4 58 125-183 3-60 (73)
222 PRK15331 chaperone protein Sic 96.3 0.041 8.8E-07 45.6 9.4 85 164-249 49-133 (165)
223 PF12921 ATP13: Mitochondrial 96.3 0.062 1.3E-06 43.0 10.0 80 400-479 3-98 (126)
224 PF03704 BTAD: Bacterial trans 96.2 0.057 1.2E-06 45.1 10.3 70 507-577 65-139 (146)
225 PF09205 DUF1955: Domain of un 96.2 0.47 1E-05 37.5 14.5 59 405-464 92-150 (161)
226 smart00299 CLH Clathrin heavy 96.1 0.56 1.2E-05 38.7 15.4 124 439-585 12-136 (140)
227 PF12921 ATP13: Mitochondrial 96.0 0.12 2.7E-06 41.3 10.5 97 468-584 1-98 (126)
228 PF13424 TPR_12: Tetratricopep 96.0 0.021 4.5E-07 41.6 5.7 61 506-566 7-73 (78)
229 PF09205 DUF1955: Domain of un 95.9 0.64 1.4E-05 36.8 14.0 64 506-570 88-151 (161)
230 COG3898 Uncharacterized membra 95.9 1.7 3.7E-05 41.4 32.1 287 199-502 97-396 (531)
231 smart00299 CLH Clathrin heavy 95.8 0.87 1.9E-05 37.5 15.6 40 123-163 13-52 (140)
232 COG4105 ComL DNA uptake lipopr 95.8 1.4 2.9E-05 39.7 19.8 58 227-285 173-230 (254)
233 PRK15331 chaperone protein Sic 95.7 0.15 3.3E-06 42.3 10.1 93 122-215 42-134 (165)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.38 8.3E-06 47.0 13.7 66 114-181 72-141 (453)
235 PF13424 TPR_12: Tetratricopep 95.6 0.04 8.6E-07 40.0 5.8 63 223-285 7-72 (78)
236 KOG3941 Intermediate in Toll s 95.5 0.19 4.1E-06 45.2 10.6 88 396-483 64-172 (406)
237 PF04053 Coatomer_WDAD: Coatom 95.5 0.34 7.4E-06 48.4 13.8 159 372-565 269-428 (443)
238 KOG3941 Intermediate in Toll s 95.4 0.14 3E-06 46.0 9.4 97 362-461 65-182 (406)
239 PF04053 Coatomer_WDAD: Coatom 95.4 0.25 5.4E-06 49.4 12.5 133 117-284 295-427 (443)
240 PF10300 DUF3808: Protein of u 95.3 1.4 3.1E-05 44.8 17.6 162 403-567 192-375 (468)
241 PRK11906 transcriptional regul 95.2 2 4.3E-05 42.4 17.2 112 168-283 320-431 (458)
242 PF07079 DUF1347: Protein of u 95.2 3.4 7.5E-05 40.3 41.9 433 92-544 18-530 (549)
243 COG4785 NlpI Lipoprotein NlpI, 95.1 1.9 4E-05 37.6 14.7 29 295-323 238-266 (297)
244 COG3118 Thioredoxin domain-con 95.1 2.1 4.6E-05 39.3 16.0 122 162-288 144-265 (304)
245 PF13428 TPR_14: Tetratricopep 95.1 0.063 1.4E-06 33.7 4.7 38 155-192 4-41 (44)
246 PF10300 DUF3808: Protein of u 95.1 1.2 2.5E-05 45.4 16.2 129 158-288 194-334 (468)
247 KOG0543 FKBP-type peptidyl-pro 95.0 0.46 1E-05 45.4 12.0 91 124-214 215-319 (397)
248 KOG2610 Uncharacterized conser 94.9 0.72 1.6E-05 42.8 12.6 161 410-574 114-283 (491)
249 COG1729 Uncharacterized protei 94.9 0.41 9E-06 43.3 11.0 99 154-253 144-247 (262)
250 KOG1258 mRNA processing protei 94.9 5 0.00011 40.7 37.4 408 83-518 48-489 (577)
251 KOG1920 IkappaB kinase complex 94.8 8 0.00017 42.7 24.6 23 509-531 1004-1026(1265)
252 KOG0543 FKBP-type peptidyl-pro 94.8 1 2.2E-05 43.2 13.6 95 471-567 259-354 (397)
253 PF10345 Cohesin_load: Cohesin 94.8 6.9 0.00015 41.6 42.1 196 116-321 29-252 (608)
254 PF07035 Mic1: Colon cancer-as 94.6 2.4 5.1E-05 35.8 15.1 101 420-530 15-115 (167)
255 KOG1585 Protein required for f 94.5 2.2 4.7E-05 37.9 14.0 85 188-285 33-117 (308)
256 PF13170 DUF4003: Protein of u 94.5 4.4 9.6E-05 38.2 20.8 133 202-336 78-224 (297)
257 KOG1941 Acetylcholine receptor 94.3 2.8 6.2E-05 39.5 15.0 156 90-246 16-187 (518)
258 KOG2610 Uncharacterized conser 94.3 4.6 0.0001 37.7 16.4 113 130-244 116-232 (491)
259 PF08631 SPO22: Meiosis protei 94.3 4.8 0.0001 37.8 25.2 122 128-250 4-150 (278)
260 KOG4555 TPR repeat-containing 94.1 0.92 2E-05 35.8 9.6 90 162-251 53-145 (175)
261 COG1729 Uncharacterized protei 94.0 0.71 1.5E-05 41.8 10.4 95 119-215 144-244 (262)
262 PRK11906 transcriptional regul 94.0 2.6 5.6E-05 41.6 14.8 148 414-565 273-433 (458)
263 PF04184 ST7: ST7 protein; In 93.9 7.5 0.00016 38.7 17.7 63 435-497 260-323 (539)
264 COG4649 Uncharacterized protei 93.9 3.4 7.3E-05 34.6 14.1 124 233-358 70-196 (221)
265 PF04184 ST7: ST7 protein; In 93.6 8 0.00017 38.5 17.3 60 333-392 263-323 (539)
266 COG3118 Thioredoxin domain-con 93.6 6 0.00013 36.5 17.0 143 408-554 143-287 (304)
267 PF13428 TPR_14: Tetratricopep 93.5 0.3 6.4E-06 30.6 5.4 41 118-159 2-42 (44)
268 COG3629 DnrI DNA-binding trans 93.5 0.75 1.6E-05 42.4 9.8 77 154-230 155-236 (280)
269 PF13512 TPR_18: Tetratricopep 93.4 2 4.3E-05 35.0 11.0 58 126-183 19-78 (142)
270 PF08631 SPO22: Meiosis protei 93.3 7.1 0.00015 36.7 26.8 101 401-504 86-192 (278)
271 COG0457 NrfG FOG: TPR repeat [ 93.3 5.8 0.00012 35.6 30.0 96 329-425 59-156 (291)
272 COG3629 DnrI DNA-binding trans 93.3 1 2.3E-05 41.4 10.4 75 470-545 154-233 (280)
273 COG4649 Uncharacterized protei 92.8 5.2 0.00011 33.6 13.8 126 198-323 70-196 (221)
274 KOG1941 Acetylcholine receptor 92.5 9.8 0.00021 36.1 16.5 56 265-320 128-188 (518)
275 COG4105 ComL DNA uptake lipopr 92.5 7.9 0.00017 35.0 23.5 70 306-375 46-117 (254)
276 PF13170 DUF4003: Protein of u 92.5 9.7 0.00021 36.0 21.3 49 275-323 78-132 (297)
277 PF13512 TPR_18: Tetratricopep 92.4 4.9 0.00011 32.8 11.9 51 165-215 23-76 (142)
278 PF07035 Mic1: Colon cancer-as 92.1 6.6 0.00014 33.2 15.4 98 353-460 18-115 (167)
279 COG0457 NrfG FOG: TPR repeat [ 92.1 8.5 0.00019 34.4 30.5 222 342-568 36-265 (291)
280 KOG1585 Protein required for f 91.8 9.1 0.0002 34.2 19.7 85 261-355 33-117 (308)
281 PF10602 RPN7: 26S proteasome 91.7 2.6 5.6E-05 36.3 10.4 94 471-566 38-140 (177)
282 PF13431 TPR_17: Tetratricopep 91.6 0.17 3.6E-06 29.6 2.2 30 177-206 4-33 (34)
283 PF04097 Nic96: Nup93/Nic96; 91.6 21 0.00045 38.0 21.5 88 370-462 264-355 (613)
284 KOG4555 TPR repeat-containing 91.3 6.2 0.00013 31.3 10.8 51 197-248 54-104 (175)
285 PF10602 RPN7: 26S proteasome 90.8 5.2 0.00011 34.5 11.5 63 330-392 37-101 (177)
286 PF13176 TPR_7: Tetratricopept 90.4 0.63 1.4E-05 27.5 3.9 25 542-566 2-26 (36)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 90.3 2 4.3E-05 32.0 6.9 43 137-179 27-69 (103)
288 PF13176 TPR_7: Tetratricopept 90.2 0.63 1.4E-05 27.6 3.8 25 262-286 2-26 (36)
289 PF02284 COX5A: Cytochrome c o 90.2 2 4.4E-05 32.2 7.0 59 135-193 28-86 (108)
290 KOG2066 Vacuolar assembly/sort 89.7 30 0.00065 36.6 26.2 155 124-287 363-533 (846)
291 PF04097 Nic96: Nup93/Nic96; 89.4 33 0.00071 36.5 24.2 42 157-198 116-157 (613)
292 COG4785 NlpI Lipoprotein NlpI, 89.1 15 0.00032 32.3 16.9 173 174-359 87-267 (297)
293 KOG2396 HAT (Half-A-TPR) repea 89.0 26 0.00057 35.0 38.0 94 99-195 89-183 (568)
294 KOG1464 COP9 signalosome, subu 89.0 18 0.00038 32.9 17.8 189 236-425 42-258 (440)
295 KOG0276 Vesicle coat complex C 88.9 6.3 0.00014 40.0 11.4 131 402-565 617-747 (794)
296 PF13431 TPR_17: Tetratricopep 88.9 0.52 1.1E-05 27.5 2.7 32 104-137 2-33 (34)
297 KOG4570 Uncharacterized conser 88.6 6 0.00013 36.6 10.2 105 147-252 59-166 (418)
298 PF09613 HrpB1_HrpK: Bacterial 88.5 13 0.00029 31.0 13.3 16 481-496 56-71 (160)
299 KOG0276 Vesicle coat complex C 88.3 4.7 0.0001 40.8 10.1 149 233-424 598-746 (794)
300 PF11207 DUF2989: Protein of u 88.1 6.5 0.00014 34.1 9.7 75 203-278 123-197 (203)
301 PF09613 HrpB1_HrpK: Bacterial 87.8 15 0.00032 30.7 13.3 15 130-144 23-37 (160)
302 TIGR02561 HrpB1_HrpK type III 87.6 7.7 0.00017 31.8 9.3 62 470-535 8-75 (153)
303 PRK09687 putative lyase; Provi 87.6 25 0.00054 33.0 27.6 22 474-496 240-261 (280)
304 KOG4570 Uncharacterized conser 87.0 11 0.00024 35.0 10.9 47 450-496 116-162 (418)
305 TIGR02561 HrpB1_HrpK type III 86.8 16 0.00035 30.0 13.4 51 165-215 23-73 (153)
306 PF00637 Clathrin: Region in C 86.5 0.28 6E-06 40.7 0.7 84 475-565 13-96 (143)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 86.4 7 0.00015 29.2 7.7 49 484-532 22-70 (103)
308 PF02284 COX5A: Cytochrome c o 85.4 6.3 0.00014 29.8 7.1 47 382-428 28-74 (108)
309 KOG1550 Extracellular protein 84.5 57 0.0012 34.3 24.5 178 275-464 228-427 (552)
310 PRK09687 putative lyase; Provi 84.4 36 0.00079 31.9 29.2 200 366-586 70-279 (280)
311 KOG2066 Vacuolar assembly/sort 84.3 61 0.0013 34.5 29.3 170 159-358 363-534 (846)
312 COG4455 ImpE Protein of avirul 83.9 7.7 0.00017 34.0 8.0 61 121-182 5-65 (273)
313 PF06552 TOM20_plant: Plant sp 83.6 11 0.00024 32.0 8.7 74 171-252 54-138 (186)
314 PF11207 DUF2989: Protein of u 83.1 21 0.00046 31.1 10.5 72 521-593 123-197 (203)
315 PF00515 TPR_1: Tetratricopept 83.0 2.9 6.3E-05 24.0 3.9 27 261-287 3-29 (34)
316 KOG4234 TPR repeat-containing 82.9 31 0.00067 30.0 11.5 91 125-216 103-198 (271)
317 COG3947 Response regulator con 82.8 40 0.00087 31.2 14.5 43 415-459 149-191 (361)
318 PF10345 Cohesin_load: Cohesin 82.3 74 0.0016 34.0 42.2 196 80-286 30-252 (608)
319 PF13374 TPR_10: Tetratricopep 82.3 3.1 6.6E-05 25.2 4.1 27 260-286 3-29 (42)
320 PF13374 TPR_10: Tetratricopep 81.3 4.1 8.9E-05 24.6 4.4 28 118-145 3-30 (42)
321 PRK11619 lytic murein transgly 81.1 83 0.0018 33.7 35.0 232 114-356 126-373 (644)
322 PF00515 TPR_1: Tetratricopept 81.0 4.9 0.00011 23.0 4.4 25 367-391 4-28 (34)
323 PF07719 TPR_2: Tetratricopept 80.7 4.7 0.0001 23.0 4.3 28 541-568 3-30 (34)
324 PF07719 TPR_2: Tetratricopept 80.4 5.2 0.00011 22.8 4.4 24 121-144 5-28 (34)
325 COG1747 Uncharacterized N-term 80.3 69 0.0015 32.3 23.5 164 397-568 64-234 (711)
326 KOG2063 Vacuolar assembly/sort 80.2 99 0.0021 34.1 16.4 39 443-481 600-638 (877)
327 KOG2396 HAT (Half-A-TPR) repea 79.7 72 0.0016 32.1 38.6 426 135-599 89-555 (568)
328 COG2976 Uncharacterized protei 79.6 41 0.00088 29.2 15.2 126 434-569 54-189 (207)
329 PF00637 Clathrin: Region in C 79.2 0.79 1.7E-05 38.0 0.7 82 406-494 14-95 (143)
330 KOG0890 Protein kinase of the 78.8 1.7E+02 0.0037 35.9 25.6 311 191-533 1388-1731(2382)
331 COG2976 Uncharacterized protei 78.5 44 0.00095 29.0 13.7 92 193-289 96-189 (207)
332 PF08424 NRDE-2: NRDE-2, neces 78.4 66 0.0014 31.0 16.5 43 173-215 52-94 (321)
333 PF13762 MNE1: Mitochondrial s 78.2 37 0.0008 27.9 10.6 81 367-447 42-128 (145)
334 COG2909 MalT ATP-dependent tra 78.1 1.1E+02 0.0024 33.3 28.2 227 338-564 424-684 (894)
335 PF13929 mRNA_stabil: mRNA sta 78.1 59 0.0013 30.3 16.5 137 449-585 143-289 (292)
336 PF07163 Pex26: Pex26 protein; 77.9 32 0.0007 31.6 10.2 85 476-562 90-181 (309)
337 PF13762 MNE1: Mitochondrial s 77.2 40 0.00086 27.8 10.4 83 507-589 42-130 (145)
338 PF02259 FAT: FAT domain; Int 76.6 77 0.0017 30.8 23.9 67 431-497 143-212 (352)
339 PHA02875 ankyrin repeat protei 76.4 88 0.0019 31.4 15.2 68 282-353 18-89 (413)
340 PF07721 TPR_4: Tetratricopept 76.3 4.8 0.0001 21.6 3.1 18 227-244 7-24 (26)
341 KOG1920 IkappaB kinase complex 75.8 1.5E+02 0.0032 33.6 31.3 154 343-531 894-1053(1265)
342 KOG4234 TPR repeat-containing 75.0 32 0.0007 29.9 8.9 91 161-252 104-199 (271)
343 PF07163 Pex26: Pex26 protein; 74.8 46 0.001 30.7 10.3 87 371-457 90-181 (309)
344 PF13181 TPR_8: Tetratricopept 74.4 8.9 0.00019 21.8 4.2 27 541-567 3-29 (34)
345 PF13174 TPR_6: Tetratricopept 74.2 6.2 0.00013 22.2 3.5 15 233-247 12-26 (33)
346 KOG4648 Uncharacterized conser 74.1 18 0.00038 34.1 7.7 52 90-144 107-158 (536)
347 TIGR03504 FimV_Cterm FimV C-te 73.9 7.6 0.00016 24.3 3.8 22 546-567 6-27 (44)
348 COG5159 RPN6 26S proteasome re 73.7 73 0.0016 29.5 11.2 23 544-566 130-152 (421)
349 COG2909 MalT ATP-dependent tra 73.1 1.5E+02 0.0032 32.4 28.3 227 230-459 424-684 (894)
350 COG3947 Response regulator con 73.0 81 0.0018 29.4 16.1 57 438-495 283-339 (361)
351 PF02259 FAT: FAT domain; Int 72.9 96 0.0021 30.2 25.4 63 260-322 147-212 (352)
352 PF07575 Nucleopor_Nup85: Nup8 72.7 1.3E+02 0.0029 31.7 18.3 62 398-461 404-465 (566)
353 PRK11619 lytic murein transgly 72.7 1.4E+02 0.0031 32.0 34.8 266 109-391 91-373 (644)
354 PF06552 TOM20_plant: Plant sp 72.5 35 0.00075 29.2 8.5 110 450-568 7-136 (186)
355 PF13181 TPR_8: Tetratricopept 72.5 9.7 0.00021 21.7 4.0 27 261-287 3-29 (34)
356 COG4455 ImpE Protein of avirul 71.9 72 0.0016 28.3 11.8 75 155-229 4-80 (273)
357 PF13174 TPR_6: Tetratricopept 71.8 6.7 0.00014 22.1 3.2 20 443-462 9-28 (33)
358 KOG4077 Cytochrome c oxidase, 71.5 27 0.00058 27.7 7.0 43 139-181 71-113 (149)
359 cd08819 CARD_MDA5_2 Caspase ac 71.5 38 0.00082 24.9 7.3 14 235-248 50-63 (88)
360 PF08424 NRDE-2: NRDE-2, neces 71.1 1E+02 0.0022 29.7 17.5 79 133-212 47-128 (321)
361 KOG4648 Uncharacterized conser 70.6 28 0.00062 32.8 8.2 94 124-220 104-197 (536)
362 KOG1550 Extracellular protein 69.9 1.5E+02 0.0033 31.2 28.5 82 168-252 228-324 (552)
363 KOG4077 Cytochrome c oxidase, 69.3 15 0.00033 28.9 5.3 61 521-582 66-126 (149)
364 TIGR03504 FimV_Cterm FimV C-te 69.3 12 0.00026 23.4 4.0 24 123-146 5-28 (44)
365 PHA02875 ankyrin repeat protei 68.9 88 0.0019 31.4 12.6 125 112-245 25-156 (413)
366 PF13929 mRNA_stabil: mRNA sta 68.2 1E+02 0.0023 28.7 16.6 60 397-456 200-260 (292)
367 KOG4642 Chaperone-dependent E3 67.2 90 0.002 28.2 10.1 118 444-565 20-143 (284)
368 KOG2063 Vacuolar assembly/sort 66.3 2.2E+02 0.0047 31.6 20.9 119 223-341 506-638 (877)
369 KOG2297 Predicted translation 66.0 1.2E+02 0.0026 28.5 18.0 72 269-349 265-341 (412)
370 PF10579 Rapsyn_N: Rapsyn N-te 65.0 23 0.00051 25.4 5.1 20 507-526 46-65 (80)
371 PF10579 Rapsyn_N: Rapsyn N-te 64.6 26 0.00057 25.1 5.3 45 551-595 18-64 (80)
372 PF10366 Vps39_1: Vacuolar sor 64.2 43 0.00094 26.0 7.1 26 542-567 42-67 (108)
373 PRK10941 hypothetical protein; 64.2 1E+02 0.0022 28.8 10.7 80 507-587 184-264 (269)
374 KOG1464 COP9 signalosome, subu 64.0 1.2E+02 0.0026 27.8 22.3 280 289-577 21-340 (440)
375 PF11848 DUF3368: Domain of un 63.5 28 0.00061 22.2 5.0 32 551-582 14-45 (48)
376 PF09986 DUF2225: Uncharacteri 62.3 1.2E+02 0.0025 27.2 11.6 64 507-570 121-196 (214)
377 PRK10941 hypothetical protein; 61.9 94 0.002 28.9 10.1 54 160-213 189-242 (269)
378 PF11846 DUF3366: Domain of un 61.5 30 0.00064 30.3 6.6 47 100-146 127-173 (193)
379 PF14561 TPR_20: Tetratricopep 61.1 66 0.0014 23.9 8.4 57 180-236 16-73 (90)
380 cd08819 CARD_MDA5_2 Caspase ac 60.6 65 0.0014 23.7 7.0 65 171-240 21-85 (88)
381 COG5159 RPN6 26S proteasome re 59.1 1.5E+02 0.0033 27.5 11.3 32 370-401 9-40 (421)
382 KOG0687 26S proteasome regulat 58.8 1.7E+02 0.0036 27.9 16.1 19 406-424 111-129 (393)
383 PF00244 14-3-3: 14-3-3 protei 58.4 1.5E+02 0.0032 27.1 11.0 18 515-532 180-197 (236)
384 KOG4507 Uncharacterized conser 58.0 58 0.0013 33.4 8.3 59 300-359 648-706 (886)
385 KOG4567 GTPase-activating prot 57.1 60 0.0013 30.3 7.6 43 490-532 264-306 (370)
386 PF14689 SPOB_a: Sensor_kinase 55.8 38 0.00083 23.0 4.9 25 437-461 26-50 (62)
387 PF04910 Tcf25: Transcriptiona 55.5 2.1E+02 0.0046 28.1 16.5 57 511-567 110-167 (360)
388 KOG2034 Vacuolar sorting prote 54.8 3.3E+02 0.0071 29.9 26.7 352 192-583 364-771 (911)
389 KOG0292 Vesicle coat complex C 54.7 1.1E+02 0.0023 33.4 9.8 71 445-530 654-724 (1202)
390 KOG4521 Nuclear pore complex, 54.6 3.8E+02 0.0081 30.6 15.1 24 191-214 925-948 (1480)
391 KOG2471 TPR repeat-containing 53.8 2.5E+02 0.0055 28.4 13.5 107 478-586 249-381 (696)
392 PRK10564 maltose regulon perip 53.8 34 0.00074 31.9 5.7 45 113-157 252-297 (303)
393 KOG0890 Protein kinase of the 53.3 5.4E+02 0.012 32.1 35.7 319 226-569 1388-1732(2382)
394 smart00028 TPR Tetratricopepti 53.1 33 0.00071 18.2 3.9 23 263-285 5-27 (34)
395 KOG2659 LisH motif-containing 52.7 1.7E+02 0.0038 26.2 10.3 99 465-566 22-130 (228)
396 KOG4507 Uncharacterized conser 52.7 1.2E+02 0.0025 31.4 9.3 102 164-270 619-721 (886)
397 KOG0403 Neoplastic transformat 52.7 2.5E+02 0.0054 28.0 27.1 26 262-287 217-242 (645)
398 KOG3807 Predicted membrane pro 52.4 2.1E+02 0.0046 27.1 12.2 61 508-568 279-340 (556)
399 PF12862 Apc5: Anaphase-promot 52.0 68 0.0015 24.0 6.3 22 265-286 47-68 (94)
400 PF10366 Vps39_1: Vacuolar sor 52.0 97 0.0021 24.1 7.2 26 262-287 42-67 (108)
401 smart00386 HAT HAT (Half-A-TPR 51.8 35 0.00076 18.7 3.8 21 169-189 4-24 (33)
402 PF11846 DUF3366: Domain of un 51.4 89 0.0019 27.3 8.0 32 326-357 141-172 (193)
403 COG1747 Uncharacterized N-term 50.7 2.9E+02 0.0063 28.2 24.8 164 293-463 65-234 (711)
404 KOG0376 Serine-threonine phosp 50.0 53 0.0012 32.8 6.6 105 124-232 11-116 (476)
405 PRK10564 maltose regulon perip 49.3 45 0.00098 31.2 5.7 30 507-536 260-289 (303)
406 PRK13342 recombination factor 49.0 2.9E+02 0.0064 27.7 20.0 47 367-413 230-279 (413)
407 cd00280 TRFH Telomeric Repeat 49.0 1.3E+02 0.0028 25.9 7.7 22 193-214 118-139 (200)
408 PF07575 Nucleopor_Nup85: Nup8 48.8 3.5E+02 0.0077 28.6 18.3 76 349-426 390-465 (566)
409 cd00280 TRFH Telomeric Repeat 47.9 1.4E+02 0.0031 25.7 7.8 48 485-532 85-139 (200)
410 KOG3364 Membrane protein invol 47.6 1.3E+02 0.0029 24.4 7.2 71 114-184 29-103 (149)
411 KOG0687 26S proteasome regulat 47.3 2.6E+02 0.0057 26.7 16.8 164 235-427 36-209 (393)
412 COG4003 Uncharacterized protei 46.9 83 0.0018 22.6 5.3 32 544-576 36-67 (98)
413 PF09868 DUF2095: Uncharacteri 46.3 84 0.0018 24.3 5.7 41 545-586 67-107 (128)
414 KOG2659 LisH motif-containing 46.1 2.2E+02 0.0047 25.6 9.1 100 430-531 22-130 (228)
415 PF04190 DUF410: Protein of un 45.7 2.5E+02 0.0055 26.0 17.5 159 341-533 2-170 (260)
416 PF11848 DUF3368: Domain of un 45.5 79 0.0017 20.2 5.2 31 516-546 14-44 (48)
417 PF04910 Tcf25: Transcriptiona 45.3 3.1E+02 0.0067 26.9 20.7 65 185-249 99-167 (360)
418 PF14689 SPOB_a: Sensor_kinase 45.3 64 0.0014 22.0 4.7 28 505-532 24-51 (62)
419 PF00244 14-3-3: 14-3-3 protei 45.1 1.9E+02 0.004 26.4 9.1 57 405-461 7-64 (236)
420 PF09670 Cas_Cas02710: CRISPR- 45.0 3.2E+02 0.0069 27.1 11.3 18 233-250 143-160 (379)
421 COG0735 Fur Fe2+/Zn2+ uptake r 44.6 1.1E+02 0.0025 25.2 7.0 60 353-413 10-69 (145)
422 TIGR02508 type_III_yscG type I 44.4 1.4E+02 0.0031 22.8 9.2 52 372-429 47-98 (115)
423 PF11663 Toxin_YhaV: Toxin wit 44.3 23 0.0005 28.4 2.7 18 486-503 112-129 (140)
424 PF11663 Toxin_YhaV: Toxin wit 44.1 27 0.0006 28.0 3.0 30 199-230 108-137 (140)
425 PF09454 Vps23_core: Vps23 cor 43.5 40 0.00087 23.3 3.4 31 117-147 8-38 (65)
426 KOG4642 Chaperone-dependent E3 43.5 2.6E+02 0.0055 25.5 10.5 74 100-178 29-104 (284)
427 PRK14956 DNA polymerase III su 43.2 3.9E+02 0.0084 27.5 11.7 31 147-179 197-227 (484)
428 COG5108 RPO41 Mitochondrial DN 43.1 2.1E+02 0.0046 30.1 9.6 23 191-213 33-55 (1117)
429 COG0735 Fur Fe2+/Zn2+ uptake r 42.9 1.2E+02 0.0025 25.2 6.8 43 262-304 23-65 (145)
430 KOG1308 Hsp70-interacting prot 42.5 26 0.00055 33.2 3.1 90 129-219 126-215 (377)
431 PF12862 Apc5: Anaphase-promot 42.3 1.2E+02 0.0026 22.7 6.3 16 197-212 52-67 (94)
432 PRK09857 putative transposase; 41.8 2E+02 0.0044 27.2 9.1 65 508-573 210-274 (292)
433 PF10475 DUF2450: Protein of u 41.5 2.2E+02 0.0048 26.9 9.4 117 405-532 104-225 (291)
434 cd08326 CARD_CASP9 Caspase act 41.4 1.4E+02 0.0031 21.9 6.7 59 207-276 20-78 (84)
435 KOG4279 Serine/threonine prote 40.8 5E+02 0.011 28.1 12.7 220 238-515 180-410 (1226)
436 KOG4521 Nuclear pore complex, 40.6 6.2E+02 0.013 29.1 14.6 149 231-386 930-1124(1480)
437 PF11123 DNA_Packaging_2: DNA 39.9 77 0.0017 22.3 4.2 33 167-199 12-44 (82)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 39.0 2E+02 0.0044 23.0 9.0 43 522-564 81-124 (126)
439 COG5108 RPO41 Mitochondrial DN 38.5 1.9E+02 0.0042 30.4 8.5 75 474-551 33-115 (1117)
440 PRK14136 recX recombination re 38.1 3.6E+02 0.0077 25.6 16.7 63 76-160 158-220 (309)
441 PF14669 Asp_Glu_race_2: Putat 37.8 2.8E+02 0.006 24.2 15.0 29 332-360 135-163 (233)
442 KOG0376 Serine-threonine phosp 37.7 80 0.0017 31.6 5.7 52 444-497 14-66 (476)
443 PF12926 MOZART2: Mitotic-spin 37.6 1.7E+02 0.0036 21.6 8.1 43 525-567 29-71 (88)
444 PF14561 TPR_20: Tetratricopep 37.4 1.7E+02 0.0037 21.7 8.3 31 116-146 21-51 (90)
445 PF14853 Fis1_TPR_C: Fis1 C-te 36.8 1.2E+02 0.0027 19.9 5.2 20 548-567 10-29 (53)
446 smart00777 Mad3_BUB1_I Mad3/BU 36.4 2.3E+02 0.0049 22.8 9.4 41 523-563 82-123 (125)
447 KOG0991 Replication factor C, 36.0 3.4E+02 0.0073 24.7 15.9 57 480-537 203-271 (333)
448 PF10255 Paf67: RNA polymerase 35.6 2E+02 0.0044 28.6 8.2 98 116-213 74-191 (404)
449 PF15297 CKAP2_C: Cytoskeleton 35.4 2.6E+02 0.0057 26.9 8.5 69 92-163 114-186 (353)
450 KOG0686 COP9 signalosome, subu 35.3 4.6E+02 0.0099 26.0 14.4 180 260-442 151-352 (466)
451 COG0790 FOG: TPR repeat, SEL1 35.2 3.8E+02 0.0083 25.1 25.1 123 449-578 128-276 (292)
452 PRK09857 putative transposase; 35.2 2.8E+02 0.006 26.3 8.9 65 403-468 210-274 (292)
453 PF06957 COPI_C: Coatomer (COP 35.0 4.8E+02 0.01 26.2 14.5 21 123-143 124-144 (422)
454 COG4259 Uncharacterized protei 34.8 2E+02 0.0044 21.8 6.4 60 520-581 53-112 (121)
455 PF02847 MA3: MA3 domain; Int 34.8 1.5E+02 0.0033 22.9 6.2 21 475-495 8-28 (113)
456 PF09670 Cas_Cas02710: CRISPR- 34.5 4.7E+02 0.01 25.9 12.9 57 124-181 138-198 (379)
457 PF03745 DUF309: Domain of unk 34.3 1.5E+02 0.0032 20.2 5.1 34 270-303 10-43 (62)
458 TIGR02508 type_III_yscG type I 34.3 2.1E+02 0.0046 21.9 8.9 78 485-569 21-98 (115)
459 PF02847 MA3: MA3 domain; Int 33.2 2E+02 0.0043 22.2 6.6 22 369-390 7-28 (113)
460 PRK11639 zinc uptake transcrip 33.1 2.2E+02 0.0047 24.3 7.2 51 187-237 26-76 (169)
461 PF15297 CKAP2_C: Cytoskeleton 33.1 4.6E+02 0.01 25.4 10.2 63 521-585 120-186 (353)
462 PRK15180 Vi polysaccharide bio 32.0 5.6E+02 0.012 26.0 33.3 118 130-250 302-420 (831)
463 cd08332 CARD_CASP2 Caspase act 32.0 2.2E+02 0.0047 21.2 7.0 57 207-274 24-80 (90)
464 KOG0292 Vesicle coat complex C 31.8 1.3E+02 0.0028 32.7 6.4 75 440-532 626-700 (1202)
465 PF09454 Vps23_core: Vps23 cor 31.8 1.2E+02 0.0026 21.0 4.3 54 150-203 6-59 (65)
466 PF11817 Foie-gras_1: Foie gra 31.6 2.5E+02 0.0055 25.7 7.9 53 510-562 184-241 (247)
467 PRK06645 DNA polymerase III su 31.1 6.3E+02 0.014 26.3 11.3 22 199-220 270-291 (507)
468 smart00638 LPD_N Lipoprotein N 30.8 6.7E+02 0.015 26.6 27.1 62 151-216 309-370 (574)
469 PF10475 DUF2450: Protein of u 30.8 4.7E+02 0.01 24.8 10.5 52 227-287 104-155 (291)
470 KOG4567 GTPase-activating prot 30.7 2.9E+02 0.0063 26.1 7.7 42 420-461 264-305 (370)
471 PRK09462 fur ferric uptake reg 29.7 2.8E+02 0.0061 22.9 7.2 61 494-555 7-68 (148)
472 PF04034 DUF367: Domain of unk 29.6 2.3E+02 0.0049 22.8 6.0 54 543-599 70-124 (127)
473 KOG1308 Hsp70-interacting prot 29.1 72 0.0016 30.4 3.7 86 447-535 127-213 (377)
474 COG5187 RPN7 26S proteasome re 29.0 4.9E+02 0.011 24.4 14.2 67 259-325 115-186 (412)
475 KOG2034 Vacuolar sorting prote 28.7 8.4E+02 0.018 27.0 28.2 48 299-355 509-556 (911)
476 PF11817 Foie-gras_1: Foie gra 28.7 2.9E+02 0.0063 25.3 7.8 55 475-529 184-243 (247)
477 COG5191 Uncharacterized conser 28.3 1.8E+02 0.0038 27.5 5.9 75 114-189 104-179 (435)
478 cd08780 Death_TRADD Death Doma 28.2 2.5E+02 0.0054 20.8 5.7 53 542-597 35-88 (90)
479 TIGR01228 hutU urocanate hydra 27.6 5.8E+02 0.013 26.1 9.6 178 307-499 207-423 (545)
480 PRK15180 Vi polysaccharide bio 27.3 6.7E+02 0.015 25.5 30.1 135 78-216 287-421 (831)
481 KOG2300 Uncharacterized conser 27.2 6.9E+02 0.015 25.6 33.8 442 85-564 51-552 (629)
482 COG5187 RPN7 26S proteasome re 27.1 5.3E+02 0.012 24.2 13.1 26 400-425 116-141 (412)
483 PF07827 KNTase_C: KNTase C-te 26.9 3.5E+02 0.0077 22.1 7.5 74 186-273 59-132 (143)
484 PRK08691 DNA polymerase III su 26.5 8.7E+02 0.019 26.5 12.1 92 486-580 182-286 (709)
485 PRK07003 DNA polymerase III su 26.2 9.2E+02 0.02 26.7 12.3 32 187-219 247-278 (830)
486 PHA00425 DNA packaging protein 25.9 2.5E+02 0.0055 20.1 5.0 53 167-230 14-66 (88)
487 KOG2297 Predicted translation 25.8 5.8E+02 0.013 24.2 21.8 19 505-523 322-340 (412)
488 PF12968 DUF3856: Domain of Un 25.8 2.8E+02 0.0061 22.1 5.7 20 330-349 56-75 (144)
489 PF11838 ERAP1_C: ERAP1-like C 25.8 5.9E+02 0.013 24.3 21.8 59 261-322 171-229 (324)
490 KOG2422 Uncharacterized conser 25.5 8E+02 0.017 25.7 16.2 161 127-287 248-447 (665)
491 cd07153 Fur_like Ferric uptake 25.4 1.5E+02 0.0033 23.1 4.7 47 192-238 6-52 (116)
492 PF02607 B12-binding_2: B12 bi 25.2 1.1E+02 0.0024 21.8 3.6 37 517-553 14-50 (79)
493 PRK11639 zinc uptake transcrip 25.2 3.5E+02 0.0075 23.1 7.1 45 264-308 30-74 (169)
494 KOG3364 Membrane protein invol 25.2 3.8E+02 0.0083 21.9 9.1 50 202-251 51-101 (149)
495 PF04090 RNA_pol_I_TF: RNA pol 24.9 4.1E+02 0.0088 23.4 7.3 64 504-567 41-104 (199)
496 cd07153 Fur_like Ferric uptake 24.9 1.5E+02 0.0032 23.2 4.5 44 511-554 7-50 (116)
497 COG0790 FOG: TPR repeat, SEL1 24.7 5.8E+02 0.013 23.9 22.6 84 414-500 128-222 (292)
498 PF02184 HAT: HAT (Half-A-TPR) 24.4 1.2E+02 0.0026 17.5 2.6 13 450-462 3-15 (32)
499 PF03745 DUF309: Domain of unk 24.1 2.4E+02 0.0052 19.2 5.3 48 549-596 9-61 (62)
500 PF09477 Type_III_YscG: Bacter 24.0 3.5E+02 0.0076 21.0 9.8 10 100-109 25-34 (116)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-70 Score=581.87 Aligned_cols=516 Identities=15% Similarity=0.213 Sum_probs=486.2
Q ss_pred CCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007461 77 VPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCS 156 (603)
Q Consensus 77 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (603)
.++...|..++..+++.++..+ |+++|++|.+..-+.++..+++.++..|.+.|..++|..+++.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~e-Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKD-CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3445668889999999998887 9999999998744567888899999999999999999999999963 9999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
.++.+|++.|+++.|.++|+.|.+.+. +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 999999999999999999999999887 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHH
Q 007461 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE--KGILEDPSIYASLICSFASITEVKLA 313 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a 313 (603)
++++|.++|++|...+..|+ ..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD---~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPD---RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999988764 58999999999999999999999999986 68999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007461 314 EELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ 393 (603)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (603)
.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 007461 394 GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYN 473 (603)
Q Consensus 394 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 473 (603)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHH
Q 007461 474 SLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----A-------------------REFDMCVKFYNEF 530 (603)
Q Consensus 474 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~a~~~~~~~ 530 (603)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876542 1 1246799999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhccC
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 602 (603)
++.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++|..+++++..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999999999999998443 3689999998853
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-69 Score=573.69 Aligned_cols=493 Identities=17% Similarity=0.249 Sum_probs=465.1
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNV-LPDAHTCSRLVASCVRARKFKIANTLLQVF 178 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 178 (603)
+...++..... .++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|..++|..+++.|
T Consensus 356 ~~~~~~~~~~~---~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 356 SLAAYNGGVSG---KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hHHHhccccCC---CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 44444444332 56788899999999999999999999999999985 567888899999999999999999999988
Q ss_pred HhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCcc
Q 007461 179 ITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFS 258 (603)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 258 (603)
.. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+..| |
T Consensus 433 ~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P---d 506 (1060)
T PLN03218 433 RN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA---N 506 (1060)
T ss_pred CC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC---C
Confidence 75 89999999999999999999999999999999999999999999999999999999999999999988776 4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHH
Q 007461 259 THMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE--KGMLRDPEVCLKLV 336 (603)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~ 336 (603)
..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+ .|+.||..+|+.++
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999987 57899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c-------------------C
Q 007461 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSK----L-------------------S 553 (603)
Q Consensus 497 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g 553 (603)
+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999876432 2 1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 554 QIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 554 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
..++|..+|++|.+.|+.||..||..++.++.+.+..+.+..+++.+.
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 246799999999999999999999999988889999999999998763
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-69 Score=588.85 Aligned_cols=500 Identities=16% Similarity=0.229 Sum_probs=430.4
Q ss_pred CCCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 76 AVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC 155 (603)
Q Consensus 76 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (603)
+.|+..+||.+|.++++.+...+ |+++|+.|... |+.||..||+.++++|++.+++..+.+++..+.+.|+.||..++
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~-A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDE-ALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHH-HHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 45788889999999999988877 99999999875 78888888877777666666666666666666666666666666
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC------------------
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI------------------ 217 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------------------ 217 (603)
+.|+.+|++.|++++|.++|+.|.. +|..+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 6666666666666666666665532 3555566666666666666666666655555555
Q ss_pred -----------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 218 -----------------VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 218 -----------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
.||..+|+.|+.+|++.|++++|.++|++|... |..+||.+|.+|++.|++++|++
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-------d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-------DAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------CeeeHHHHHHHHHhCCCHHHHHH
Confidence 455555556666666667777777777766543 34579999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 281 FFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|+++|++++|.++|++|.+.
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-- 453 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-- 453 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHH
Q 007461 361 KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM 440 (603)
Q Consensus 361 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (603)
|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|
T Consensus 454 --d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 454 --DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 556899999999999999999999999986 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007461 441 VAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF 520 (603)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 520 (603)
|++|+++|++++|.++|+++ .||..+||++|.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 99999999999999999987 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 521 DMCVKFYNEFR-MNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 521 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++| ++.||..+|.+|+.+|..+|+.+.++...++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999 6799999999999999999999999999999999 5899999999999999999999888777665
Q ss_pred c
Q 007461 600 F 600 (603)
Q Consensus 600 ~ 600 (603)
+
T Consensus 683 l 683 (857)
T PLN03077 683 I 683 (857)
T ss_pred H
Confidence 4
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7e-69 Score=583.47 Aligned_cols=503 Identities=17% Similarity=0.241 Sum_probs=391.4
Q ss_pred CCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007461 77 VPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCS 156 (603)
Q Consensus 77 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (603)
.|+...+|.++..+++.+...+ |..+|+.|.+. |++|+..+|..++..|.+.+..+.+.+++..+.+.+..++...++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~-A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQ-ALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHH-HHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 3445558888888888888776 88888888774 667777777666666555555555555555555555455555555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHH-----------------------
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMK----------------------- 213 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----------------------- 213 (603)
.++..|.+.|+++.|.++|++|. .+|..+||.+|.+|++.|++++|+++|++|.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 55555555555555555555443 2344555555555555555555555555554
Q ss_pred ------------hCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 007461 214 ------------SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281 (603)
Q Consensus 214 ------------~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 281 (603)
+.|+.||..+++.|+.+|++.|+++.|.++|++|...+ ..+||.+|.+|++.|++++|+++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d-------~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD-------CISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC-------cchhHHHHHHHHhCCCHHHHHHH
Confidence 44555555566778888899999999999999987543 45899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 282 FRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK 361 (603)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 361 (603)
|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.|+.+|+++|++++|.++|++|.+
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 351 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHH
Q 007461 362 ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441 (603)
Q Consensus 362 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (603)
||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.||
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---------------
Q 007461 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS--------------- 506 (603)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------------- 506 (603)
++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..|
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 999999999999999999874 5778888888888888888888888888865 45565544
Q ss_pred --------------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 507 --------------------------------------------------YTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 507 --------------------------------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
|+++|.+|++.|+.++|.++|++|.+.|+.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 455555555666666666666666666666
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 537 IDRAIAGIMVGVFSKLSQIEELVKLLQDMK-SEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
||..+|+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++++|.+.|+.++|.+++++|
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 666666666666666666666666666666 4466666666666666666666666666666655
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-64 Score=537.78 Aligned_cols=473 Identities=14% Similarity=0.185 Sum_probs=451.1
Q ss_pred ChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 79 DAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
+..+|+.+|.++.+.++..+ |+++|++|....++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~-Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHRE-ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 34579999999999999877 99999999987678899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHH
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE 238 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 238 (603)
+.+|++.|+++.|.++|++|.+ ++..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999999864 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 239 KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFK 318 (603)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 318 (603)
.+.+++..+...+..++ ..+||.|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|+
T Consensus 242 ~~~~l~~~~~~~g~~~d---~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGD---TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HHHHHHHHHHHhCCCcc---ceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999888764 4789999999999999999999999996 4589999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 319 EAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
+|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.++.|+..+|++|+.+|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 489
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHH
Q 007461 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA-KGCEPNVWIYNSLMD 477 (603)
Q Consensus 399 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~ 477 (603)
..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 599999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHH
Q 007461 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI-DRAIAGIMVGVFSKLSQIE 556 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 556 (603)
+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..|++.|++.|+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999999876 67899999999999999999999999999999764 44 4679999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 007461 557 ELVKLLQDMKSEGTK 571 (603)
Q Consensus 557 ~A~~~~~~m~~~g~~ 571 (603)
+|.+++++|.+.|+.
T Consensus 546 ~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 546 EAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-62 Score=521.57 Aligned_cols=469 Identities=16% Similarity=0.197 Sum_probs=445.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN-VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE-IALLAFNS 191 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 191 (603)
.++..+|+.+|..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.+.+++..+.+.+. ++..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567799999999999999999999999998764 689999999999999999999999999999998876 89999999
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK 271 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 271 (603)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.+..++ ..+|+.++.++.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE---PRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHhc
Confidence 99999999999999999999964 7999999999999999999999999999999887764 4799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 351 (603)
.|..+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999853 6899999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007461 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFD 431 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 431 (603)
|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 007461 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER-RKVTPDKVSYTTV 510 (603)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l 510 (603)
||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 689999999999999999999999999999999999999999999999999999999999999975 6899999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCc
Q 007461 511 ISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLD-ERLYHSAMNALRDAGL 589 (603)
Q Consensus 511 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~a~~~~g~ 589 (603)
+.+|++.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|..+++++.+ +.|+ ..+|..|++.|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 99999999999999998865 5789999999999999999999999999999974 4564 6799999999999999
Q ss_pred HHHHHHHHhhccC
Q 007461 590 QMQAQWLQQNFEG 602 (603)
Q Consensus 590 ~~~a~~~~~~~~~ 602 (603)
+++|.++++.|+.
T Consensus 544 ~~~A~~v~~~m~~ 556 (697)
T PLN03081 544 QAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-31 Score=295.70 Aligned_cols=501 Identities=11% Similarity=0.038 Sum_probs=358.0
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN--------------- 147 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------- 147 (603)
+..+...+...++..+ |.++|+.+.+.. +.+...+..+...+...|++++|++.++.+.+..
T Consensus 366 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 366 LSLLGEAYLALGDFEK-AAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHCCCHHH-HHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 4445555555555554 666666665432 2234445555555555555555555555544332
Q ss_pred ------------------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHH
Q 007461 148 ------------------VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVY 209 (603)
Q Consensus 148 ------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (603)
.+++..++..+...+...|++++|...|+++....+.+..++..+...+...|++++|.+.+
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 13445556666666666666666666666666655555566666666666666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 007461 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG 289 (603)
Q Consensus 210 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 289 (603)
+++.+.+. .+..++..+...+.+.|+.++|..+++++...++. +...+..++..+...|++++|+++++.+.+..
T Consensus 523 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 523 EKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ----EIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 66665432 24556666666666677777777777666554432 23456667777777777777777777776542
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 007461 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCA 369 (603)
Q Consensus 290 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
+.+...|..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++.+..+ .+..++..
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 674 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIG 674 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHH
Confidence 3356677777777777888888888887777654 33566677777778888888888888887776654 34567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (603)
++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|+.+.+.+ |+..++..+...+.+.|+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCC
Confidence 7888888888888888888887765 4456677777788888888888888888887764 444677778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
+++|.+.++++.+. .+.+...+..+...|...|+.++|...|+++.+.. +++...++.+...+...|+ .+|+.++++
T Consensus 752 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 752 TAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 88888888888876 35577788888888888999999999999988754 3466778888888888888 779999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhccC
Q 007461 530 FRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602 (603)
Q Consensus 530 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 602 (603)
+.+.... ++..+..+...+...|++++|.+.++++.+.+. .+..++..+..++.+.|+.++|.++++++.+
T Consensus 829 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 829 ALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 8876433 556778889999999999999999999998764 4889999999999999999999999998753
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.6e-30 Score=285.66 Aligned_cols=500 Identities=13% Similarity=0.059 Sum_probs=292.7
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
+..+...+...++..+ |...++.+.+.. +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+
T Consensus 332 ~~~la~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 332 RRLLASIQLRLGRVDE-AIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISK 407 (899)
T ss_pred HHHHHHHHHHCCCHHH-HHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 5556666777777776 999999998753 5578889999999999999999999999998765 45667777788888
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|++++|...++.+....+.....+..++..+.+.|++++|..+++.+.+.. +.+..++..+...+...|++++|.+
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888888888877766555666666777777777777777777776542 3355666777777777777777777
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
.|+++...++. +...+..++..+...|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++.+
T Consensus 487 ~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 487 AFEKALSIEPD----FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHhhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766654332 22355566666666666666666666665542 22444555555555556666666666655554
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007461 323 KGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTY 402 (603)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 402 (603)
.+ +.+...+..++..|.+.|++++|..+++.+.+..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+
T Consensus 562 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 562 LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 43 22344445555555555555555555555554433 234445555555555555555555555554432 2233444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------------------
Q 007461 403 ASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG------------------ 464 (603)
Q Consensus 403 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------ 464 (603)
..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|.++++.+.+..
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 445555555555555555555554432 3334444444444444455555544444444432
Q ss_pred --------------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 465 --------------CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 465 --------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
..|+..++..+..++...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++
T Consensus 718 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 12333344444444555555555555555544321 223444455555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
.+... .+...++.+...+.+.|+ .+|+.+++++.+.. +-+..++..+...+...|++++|...+++.
T Consensus 797 ~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 797 VKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54432 244445555555555555 44555555555431 223344445555556666666666666554
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1e-22 Score=227.50 Aligned_cols=511 Identities=10% Similarity=0.009 Sum_probs=350.2
Q ss_pred CCCChhc-hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhH----------------HHHHHHHHhcCCHHHHHH
Q 007461 76 AVPDAKK-FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTL----------------KLLIRYLVQSKKWDSIVS 138 (603)
Q Consensus 76 ~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----------------~~l~~~~~~~~~~~~a~~ 138 (603)
..|+.+. +......+...++..+ |.+.++++.+.. +.+.... ..+...+.+.|++++|++
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~-A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~ 133 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDG-AQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALA 133 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHH
Confidence 3454433 5555566667777766 999999988753 2333322 233456788899999999
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC
Q 007461 139 LSEDFKIYNVLPDAH-TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI 217 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 217 (603)
.|+.+.+.+ +|+.. ............|+.++|++.|+++.+..|.+...+..+...+...|++++|+..++++.+...
T Consensus 134 ~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~ 212 (1157)
T PRK11447 134 SYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA 212 (1157)
T ss_pred HHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Confidence 999988765 44432 2212222233458999999999999998888888999999999999999999999988754321
Q ss_pred ------------------C--------------CChhhH---------------------HHHHHHHHHcCCHHHHHHHH
Q 007461 218 ------------------V--------------LDSGCY---------------------CQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 218 ------------------~--------------p~~~~~---------------------~~ll~~~~~~g~~~~a~~~~ 244 (603)
. |+.... ......+...|++++|+..|
T Consensus 213 ~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l 292 (1157)
T PRK11447 213 GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPEL 292 (1157)
T ss_pred chHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 110000 01134466789999999999
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHccCCHH
Q 007461 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIY------------ASLICSFASITEVK 311 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~ll~~~~~~g~~~ 311 (603)
++....++. +..++..+...+.+.|++++|++.|++..+..... +...+ ......+.+.|+++
T Consensus 293 ~~aL~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~ 368 (1157)
T PRK11447 293 QQAVRANPK----DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA 368 (1157)
T ss_pred HHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHH
Confidence 998876543 34688899999999999999999999988753221 11111 12234566889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH---------------------
Q 007461 312 LAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI--------------------- 370 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------- 370 (603)
+|...++++.+.. +.+...+..+...|...|++++|.+.|++..+..+. +...+..+
T Consensus 369 eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 369 QAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 9999999998875 346677888899999999999999999998876543 22233222
Q ss_pred ---------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 371 ---------------------VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 371 ---------------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+..
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 233445678888888888877654 2244566677778888888888888888877653
Q ss_pred CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------------------------------------CCCCCHh
Q 007461 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK---------------------------------------GCEPNVW 470 (603)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------------~~~p~~~ 470 (603)
+.+...+..+...+.+.|+.++|...++.+... ..+.+..
T Consensus 526 -P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~ 604 (1157)
T PRK11447 526 -PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTR 604 (1157)
T ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCch
Confidence 223333333333334444444444444332110 0133455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.+..+...+.+.|+.++|+..|++..+.. +.+...+..+...|...|++++|++.++.+.+.... +...+..+..++.
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~ 682 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWA 682 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHH
Confidence 66667778888889999999998888653 224567888888888889999999999887764322 4556667788888
Q ss_pred ccCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 551 KLSQIEELVKLLQDMKSEGT--KL---DERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 551 ~~g~~~~A~~~~~~m~~~g~--~~---~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
..|++++|.++++++.+..- .| +...+..+...+...|+.++|+..+++.
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999998876522 12 2345666677888889999999888764
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=5.5e-22 Score=221.73 Aligned_cols=500 Identities=9% Similarity=-0.004 Sum_probs=357.2
Q ss_pred HhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------
Q 007461 90 MLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC-------------- 155 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 155 (603)
+....+..+.|.+.++++.... +.++..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchh
Confidence 4444455566999999998764 5578889999999999999999999999999886 3343332
Q ss_pred --HHHHHHHHccCChHHHHHHHHHHHhcCCcchh-hHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 156 --SRLVASCVRARKFKIANTLLQVFITDGEIALL-AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 156 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+.+.+...|++++|.+.|+.+....+++.. ............|+.++|++.++++.+.... +...+..+...+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~ 192 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLF 192 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 23344678899999999999999988776543 2112222223468999999999999987533 6677889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCC----------------CCCccHHHH----------------------------------
Q 007461 233 KIGDSEKVAALFLECKSRKLD----------------STPFSTHMY---------------------------------- 262 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~---------------------------------- 262 (603)
..|+.++|.+.++++...... ..+.....+
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 999999999999987543210 000000000
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHH--------
Q 007461 263 KILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLR-DPEVC-------- 332 (603)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-------- 332 (603)
......+...|++++|+..|++.++. .| +...+..+..++.+.|+.++|...|+++.+..... ....+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 12244567789999999999999886 34 67888899999999999999999999998865322 11111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---
Q 007461 333 ----LKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI--- 405 (603)
Q Consensus 333 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--- 405 (603)
......+.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2234567889999999999999998876 355677888999999999999999999988753 1222222222
Q ss_pred ---------------------------------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 406 ---------------------------------------INAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 406 ---------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
...+...|++++|.+.|++..+.. +.+...+..+...|.+
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 223445788888888888888764 4456777888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR---------------------------- 498 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------- 498 (603)
.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999998887642 223333332222333344444444433322110
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 499 -----------KVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 499 -----------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+++...+..+...+.+.|++++|++.|+++.+.... +...+..++..|...|++++|++.++...+
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 11234445667777888889999999999998886443 567788888899999999999999998875
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 568 EGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 568 ~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
.. +.+...+..+..++...|++++|.++++++.
T Consensus 666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 42 2345566677778888999999999888764
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=8.3e-22 Score=186.79 Aligned_cols=429 Identities=12% Similarity=0.100 Sum_probs=211.0
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 84 DSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
..+...+.+.+++.+ |.+......+.. +.+....-.+-..+.+..+.+....--....+.. +.-..+|..+.+.+.
T Consensus 52 l~lah~~yq~gd~~~-a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQ-AEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHhccCHHH-HHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 344455555555555 666555554432 2222333333344444445554444333333332 344556666666666
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHHcCCHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCY-CQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~ 242 (603)
..|++++|+..++.+.+..+....+|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 6666666666666666666666666666666666666666666666666553 3433322 223333344566666666
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
.|.+..+..+.. ..+|..|...+..+|+...|+.-|++.... .|+ ...|..|...|...+.+++|...+..+.
T Consensus 206 cYlkAi~~qp~f----AiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 206 CYLKAIETQPCF----AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred HHHHHHhhCCce----eeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 665555444322 235666666666666666666666665543 333 2355555555555555565555555554
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007461 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401 (603)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 401 (603)
... +....++..+...|..+|.+|.|++.+++..+..+.. ...|+.|..++-..|++.+|++.|.+..... +--..+
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 432 1133444455555555555555555555555544321 2234444444444455555554444444321 111233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHH
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHG 480 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 480 (603)
.+.+...+...|.+++|..+|....+-. +.-...++.|...|-+.|++++|+..+++.+. +.|+ ...|+.+...|-
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 4444444444444444444444444331 22233444444444444444444444444443 2333 233444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 481 RAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
..|+.+.|.+.+.+.+. +.|.. ..++.|...|-..|++.+|+.-+++..+
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 44444444444444442 22322 2344444444444444444444444444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=4.2e-19 Score=189.70 Aligned_cols=495 Identities=9% Similarity=-0.014 Sum_probs=328.9
Q ss_pred hhHHHHHH-hcC-CCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 83 FDSFLHGM-LKD-PQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVA 160 (603)
Q Consensus 83 ~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 160 (603)
+..++.+. ... |+..+ |+..|+.+.+.. +-+..++..|...|.+.|+.++|+..+++..+.. +.|...+..+ .
T Consensus 45 ~~~f~~a~~~~~~Gd~~~-A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a 119 (987)
T PRK09782 45 YPRLDKALKAQKNNDEAT-AIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-A 119 (987)
T ss_pred HHHHHHHHHHHhCCCHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-H
Confidence 33444443 333 56654 999999999864 4567788999999999999999999999999875 3344444444 3
Q ss_pred HHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh--------hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHH-HHHH
Q 007461 161 SCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG--------YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQI-MEAY 231 (603)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~ 231 (603)
.+ +++++|..+++++....|.+..++..+... |.+.+...++++ .......|+..+.... ...|
T Consensus 120 ~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY 192 (987)
T PRK09782 120 AI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRA 192 (987)
T ss_pred Hh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHH
Confidence 33 888899999999999988887777777776 666644444444 2222234445544444 7888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCC---------------------------ccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 232 YKIGDSEKVAALFLECKSRKLDSTP---------------------------FSTHMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~---------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
.+.|++++|+++++++.+.++.... .+...+..++..|.+.|+.++|.+++++
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 8888888888888777654432211 2344566777777788888888877777
Q ss_pred HHHCCCC-CCHHHHHHH------------------------------HHHHHc---------------------------
Q 007461 285 MKEKGIL-EDPSIYASL------------------------------ICSFAS--------------------------- 306 (603)
Q Consensus 285 m~~~g~~-p~~~~~~~l------------------------------l~~~~~--------------------------- 306 (603)
+...-.. |+..++..+ +..+.+
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 6432111 111111100 111112
Q ss_pred ------------------------------------cCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCC---H
Q 007461 307 ------------------------------------ITEVKLAEELFKEAEEK-G-MLRDPEVCLKLVLMYIEEGL---V 345 (603)
Q Consensus 307 ------------------------------------~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~ 345 (603)
.|+.++|.++++..... + ...+......++..|.+.+. .
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 22333333333333321 0 11123333345555555444 1
Q ss_pred HHHHHH----------------------HH---HHHhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 346 EKTLDV----------------------VE---SMKNAKLKI--SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 346 ~~a~~~----------------------~~---~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
.++..+ .+ ...... ++ +...|..+..++.. ++.++|+..+.+..... |+
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd 508 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PD 508 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cc
Confidence 122111 11 111111 12 44456666666665 77888888777776643 66
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 007461 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478 (603)
Q Consensus 399 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 478 (603)
......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 554444455557899999999999987654 4445556777788899999999999999998763 2233333344444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 007461 479 HGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEEL 558 (603)
Q Consensus 479 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 558 (603)
....|++++|...+++.++. .|+...+..+..++.+.|++++|+..+++.....+. +...+..+...+...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 55669999999999999854 577788999999999999999999999999987544 567788888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 559 VKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 559 ~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
++.+++..+.. +-+...+..+..++...|+.++|+..+++.
T Consensus 663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998753 345678888899999999999999998875
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-21 Score=184.59 Aligned_cols=430 Identities=14% Similarity=0.120 Sum_probs=301.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
...|.+-..+.|++.+|++.....-..+ +.+......+-..+.+..+++....--....+..+.-.++|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4455666667788888877766554443 333333334444566666666655544445555566677788888888888
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEAL 279 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 279 (603)
|++++|+.+++.+++.... ....|..+..++...|+.+.|.+.|.+..+.++... -....+...+-..|+.++|.
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~----ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY----CARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh----hhhcchhHHHHhhcccchhH
Confidence 8888888888888775432 566777888888888888888888877776655321 13344555556678888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 280 KFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 280 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
..|.+.++. .|. ...|..|...+-..|++..|.+.|+++++... .-...|-.|...|...+.++.|...+.+....
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 888777765 343 35677777777778888888888888776531 12456777788888888888888887777665
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhH
Q 007461 359 KLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG-QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAY 437 (603)
Q Consensus 359 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 437 (603)
.+ ....++..+...|-.+|..+-|+..|++..+.. |+ ...|+.+..++-..|++.+|.+.+....... +......
T Consensus 282 rp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 RP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred CC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 54 345567777777778888888888888877643 33 3577888888888888888888888877764 4456677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 007461 438 SSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYN 515 (603)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 515 (603)
+.|...|...|.+++|..+|....+. .|. ...++.|...|-+.|++++|+..|++.+ .+.|+. ..|+.+...|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHH
Confidence 78888888888888888888877763 443 4567777788888888888888888877 456765 46778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 516 RAREFDMCVKFYNEFRMNGGVIDR-AIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 516 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
..|+.+.|...+.+.+.- .|.. ...+.|...|-..|++.+|+.-+++.++.
T Consensus 434 e~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 888888888888877764 3332 45677777888888888888888877753
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=9.6e-19 Score=183.88 Aligned_cols=431 Identities=11% Similarity=0.014 Sum_probs=299.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+.++.+..+|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4556778889999999999999998865 47888888888999999999999999999999988899999999999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.|++++|+..|......+.. +......++..+.. ..+...............+ .+..+.. |....+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~----~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPENLP----SVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC----CHHHHHH-HHHHccCCcc
Confidence 99999999988766554321 11112222222222 1222222222222222111 2332222 2221112222
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHH---HHccCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007461 279 LKFFRDMKEKGILEDP-SIYASLICS---FASITEVKLAEELFKEAEEKG-M-LRDPEVCLKLVLMYIEEGLVEKTLDVV 352 (603)
Q Consensus 279 ~~~~~~m~~~g~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 352 (603)
..-+.+-.+ ..++. ..+..+... ....+++++|.+.++.+.+.+ . +.....+..+...+...|++++|...|
T Consensus 277 ~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 211211111 11110 111111111 123467888999999888765 2 234567778888888999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
++..+.++. ....|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 998877653 45577888888889999999999999887764 3456778888888899999999999999988875 55
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------H
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV------S 506 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~ 506 (603)
+...+..+...+.+.|++++|+..|++..+. .+.+...|+.+...+...|++++|++.|++..+.....+.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 6777888888899999999999999988875 23457788888889999999999999999987543211111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
++..+..+...|++++|.+++++....+.. +...+..+...+.+.|++++|++.|++..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 222223344568999999999998876432 3456788899999999999999999988765
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.2e-20 Score=188.43 Aligned_cols=301 Identities=10% Similarity=0.044 Sum_probs=125.6
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
...|++++|+..|+++.+.+. .+..++..+...+.+.|++++|..+++.+......+.......+..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344444445555554444321 1233444444444445555555554444443221111111123444444555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 007461 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD----PEVCLKLVLMYIEEGLVEKTLDVV 352 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 352 (603)
+|.++|+++.+.. .++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555544331 12333444444444444444444444444443321111 112223333444444444444444
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
+++.+..+. +...+..+...+ .+.|++++|.++++++.+.+...
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~-----------------------------------~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLA-----------------------------------LAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHH-----------------------------------HHCCCHHHHHHHHHHHHHHChhh
Confidence 444433221 222333344444 44444444444444444332111
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 512 (603)
...+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 1233444444444444444444444444443 233333344444444445555555554444432 344444444444
Q ss_pred HHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 007461 513 AYNR---AREFDMCVKFYNEFRMNGGVIDR 539 (603)
Q Consensus 513 ~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 539 (603)
.+.. .|+.+++..+++++.+.++.|++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 3332 23444444444444444443333
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.9e-20 Score=187.06 Aligned_cols=298 Identities=10% Similarity=0.084 Sum_probs=160.6
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHHcCCHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD---SGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~ 239 (603)
...|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3445555555555555555444555555555555555555555555555554321111 1344555666666666666
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP----SIYASLICSFASITEVKLAEE 315 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~ 315 (603)
|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|..
T Consensus 126 A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 126 AEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666654322 12345666666666666666666666666554322211 123445555566667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 395 (603)
.++++.+.. +.+...+..+...|.+.|++++|.++++++.+.++.....+++.++.+|.+.|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 776666543 223455666667777777777777777777655432223345555555555566666665555555432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCH
Q 007461 396 IPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK---TGRIRDAMWLVAKMKAKGCEPNV 469 (603)
Q Consensus 396 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 469 (603)
|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.++++.|++
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 34344455555555555555555555555543 3444455555544443 33555555555555554444443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=5.6e-18 Score=178.10 Aligned_cols=427 Identities=10% Similarity=-0.014 Sum_probs=306.6
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 84 DSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
...-..+.+.+++.+ |+..|+.+++. .|+...|..+..+|.+.|++++|+..++...+.+ +.+..+|..+..++.
T Consensus 131 k~~G~~~~~~~~~~~-Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 131 KEKGNKAYRNKDFNK-AIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344555667788876 99999999875 5788899999999999999999999999999876 556788999999999
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 243 (603)
..|++++|+.-|..+...++.+......++..+... .+........+.. .++...+..+.. |......+....-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK----FAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH----HHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 999999999988877665543332222222222221 2222222332321 122223333332 2222222222111
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHH---hccCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSL---GKSGRAFEALKFFRDMKEKG-ILE-DPSIYASLICSFASITEVKLAEELFK 318 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 318 (603)
++...+..... ...+..+...+ ...+++++|++.|+...+.+ ..| +...+..+...+...|++++|...++
T Consensus 280 ~~~~~~~~~~~----~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 280 LEDSNELDEET----GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhccccccccc----ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22111111110 01122221111 33578999999999998764 234 34567777788889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 319 EAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
...+.. +.+...|..+...+...|++++|...|+...+.++ .+..+|..+...+...|++++|+..|++..+.. +.+
T Consensus 356 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 998864 23467888899999999999999999999988765 356788899999999999999999999998864 345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--------h
Q 007461 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV--------W 470 (603)
Q Consensus 399 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------~ 470 (603)
...+..+...+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|.+.|++..+. .|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~ 509 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHH
Confidence 6677788888999999999999999998764 556888999999999999999999999998875 2321 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.++.....+...|++++|.+++++..+.. |+. ..+..+...+...|++++|++.|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222333445799999999999988653 444 56889999999999999999999998775
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=8.4e-17 Score=172.24 Aligned_cols=430 Identities=10% Similarity=-0.004 Sum_probs=299.4
Q ss_pred HHHHHHH-HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh-cCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 152 AHTCSRL-VASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK-LHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 152 ~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
..+.... .+.|.+.+++++|++++.++.+.++.+......|..+|.. .++ +++..++.. .+.-+...+..+..
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~ 255 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYAT 255 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHH
Confidence 4433333 6677777888888888888888777777767777777776 355 666666443 22346777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-CCCc---------------------------------------------------
Q 007461 230 AYYKIGDSEKVAALFLECKSRKLD-STPF--------------------------------------------------- 257 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~--------------------------------------------------- 257 (603)
.|.+.|+.++|.++++++...... +.+.
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 889999999999888876543222 1000
Q ss_pred ---------------------------------------cHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHH
Q 007461 258 ---------------------------------------STHMYKILCDSLGKSGRAFEALKFFRDMKEK--GILEDPSI 296 (603)
Q Consensus 258 ---------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~ 296 (603)
+.....-+.-...+.|+.++|.++|+..... ...++...
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 0000000111123455666666666665442 11223334
Q ss_pred HHHHHHHHHccCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHHcCCHHH
Q 007461 297 YASLICSFASITE---VKLAEEL----------------------FKEAEEK-GM-LR--DPEVCLKLVLMYIEEGLVEK 347 (603)
Q Consensus 297 ~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~ 347 (603)
..-++..+.+.+. ...+..+ ....... +. ++ +...+..+..++.. |+.++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 4467777776655 3333222 1111111 11 33 67788888888877 89999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007461 348 TLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQ 427 (603)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 427 (603)
|...+.+.....+ +......+...+...|++++|+..|+++... +|+...+..+..++.+.|+.++|...++...+
T Consensus 495 Ai~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 495 ALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998888776653 4433334455557899999999999997654 45555566777888999999999999999988
Q ss_pred cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 007461 428 KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD-KVS 506 (603)
Q Consensus 428 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~ 506 (603)
.. +.+...+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|+.++|+..+++.... .|+ ...
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a 645 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNY 645 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 75 334444444445555679999999999999985 678889999999999999999999999999965 454 466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE-RLYHSAMNALR 585 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~a~~ 585 (603)
++.+..++...|++++|+..+++..+..+. +...+..+..++...|++++|+..+++..+. .|+. .+.........
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHH
Confidence 888888999999999999999999986543 6678889999999999999999999999965 4554 44445555566
Q ss_pred hcCcHHHHHHHHhh
Q 007461 586 DAGLQMQAQWLQQN 599 (603)
Q Consensus 586 ~~g~~~~a~~~~~~ 599 (603)
...+++.+.+-+++
T Consensus 723 ~~~~~~~a~~~~~r 736 (987)
T PRK09782 723 QRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHH
Confidence 66667777665544
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4.1e-18 Score=178.35 Aligned_cols=334 Identities=12% Similarity=0.019 Sum_probs=239.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
-...++..+.+.|+++.|+.+++...... +-+...+..++.++...|+++.|...++++....|.+..++..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 35556777788888888888888887765 34455555566666778888888888888888888888888888888888
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.|++++|+..+++..+... .+...+..+...+...|++++|...++.+....+.+. ..+..+ ..+...|++++|
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~----~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG----DMIATC-LSFLNKSRLPED 196 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH----HHHHHH-HHHHHcCCHHHH
Confidence 8888888888888877532 2556777788888888888888888887765554331 233333 346778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHH
Q 007461 279 LKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEK----TLDVVES 354 (603)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~ 354 (603)
+..++.+......++...+..+..++...|+.++|...++.+.+.. +.+...+..+...|...|++++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 8888887765433344455555667778888888888888887765 3356777778888888888875 6778887
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 007461 355 MKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCV 434 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (603)
..+..+. +..++..+...+.+.|++++|+..+++..... +.+...+..+..++.+.|++++|...|+.+.+.+ +.+.
T Consensus 276 Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~ 352 (656)
T PRK15174 276 ALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTS 352 (656)
T ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccch
Confidence 7776653 56677777788888888888888888877654 2334556666777777888888888887777653 2222
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAK 463 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 463 (603)
..+..+..++...|+.++|...|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444556677778888888888877764
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=5.6e-18 Score=181.29 Aligned_cols=410 Identities=12% Similarity=0.040 Sum_probs=275.6
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
....+......++..+ |+++|....... +.+...+..+...+...|++++|..++++..+.. +.+...+..+...+
T Consensus 18 ~~d~~~ia~~~g~~~~-A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 18 IADWLQIALWAGQDAE-VITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4445566666777776 889998887532 4566678899999999999999999999988775 55677777888889
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|++++|+..++++....|.+.. +..+..++...|++++|+..++++.+.... +...+..+..++...|..+.|.+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999998887878 889999999999999999999999986433 55566777888888899999998
Q ss_pred HHHHHHhCCCCC-CCccHHHHHHHHHHHh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHcc
Q 007461 243 LFLECKSRKLDS-TPFSTHMYKILCDSLG-----KSGRA---FEALKFFRDMKEK-GILEDPS-IY----ASLICSFASI 307 (603)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~ll~~~~~~ 307 (603)
.++.... .+.. ..........++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 8876554 1110 0000001222222222 22334 6788888888754 2233221 11 1113344566
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHhcCCHHHH
Q 007461 308 TEVKLAEELFKEAEEKGML-RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKI---SDCISCAIVNGFSKRRGYWAA 383 (603)
Q Consensus 308 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 383 (603)
|+.++|...|+.+.+.+.. |+ .....+...|...|++++|+..|+.+.+.+... .......+..++.+.|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8888888888888776532 22 122224667888888888888888876654321 123455566677788888888
Q ss_pred HHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 007461 384 VKVYEQLISQGC-----------IPGQ---VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449 (603)
Q Consensus 384 ~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (603)
+++++.+..... .|+. ..+..+...+...|+.++|.++++++.... +.+...+..+...+...|+
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 888888776421 1221 233445556666777777777777776653 5556667777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007461 450 IRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV 505 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 505 (603)
+++|++.+++..+. .|+ ...+..+...+...|++++|+.+++++++. .|+..
T Consensus 409 ~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 409 PRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred HHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 77777777777664 343 445555555666677777777777777643 44443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.9e-18 Score=178.55 Aligned_cols=333 Identities=12% Similarity=0.057 Sum_probs=275.7
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
.-.++..+.+.|+..+ |..+++...... +-+...+..++..+...|++++|+..++.+.+.. +.+...+..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~-A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDV-GLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcch-hHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4567788888899887 999999888753 4456667777788888999999999999999886 56778888899999
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|++++|...+++.....+.+..++..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 99999999999999999998889999999999999999999999999988776433 33334333 35788999999999
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKL----AEELFK 318 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~ 318 (603)
.++.+........ ...+..+...+...|++++|++.|++..... ..+...+..+...+...|+.++ |...++
T Consensus 199 ~~~~~l~~~~~~~---~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 199 LARALLPFFALER---QESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHhcCCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999877654322 2345566788999999999999999998764 2356778888899999999885 899999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 319 EAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
.+.+.. +.+..++..+...+.+.|++++|...+++..+..+. +...+..+...+.+.|++++|+..|+++...+ |+
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~ 350 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GV 350 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc
Confidence 998875 347789999999999999999999999999988764 55678888999999999999999999998764 44
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 399 QV-TYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 399 ~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
.. .+..+..++...|+.++|...|++..+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 43 34445677899999999999999998764
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2e-17 Score=177.04 Aligned_cols=167 Identities=8% Similarity=0.026 Sum_probs=141.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+.++.-..-.+......|+.++|+++++...... +.+...+..+...+.+.|++++|..++++.....|.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556666677888889999999999999987643 566777899999999999999999999999998888888899999
Q ss_pred hhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 273 (603)
..+...|++++|+..+++..+... .+.. +..+..++...|+.++|...++++....+.. ...+..+...+...|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~----~~~~~~la~~l~~~~ 164 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT----QQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCC
Confidence 999999999999999999988632 2555 8888889999999999999999998876653 356777888888999
Q ss_pred CHHHHHHHHHHHHH
Q 007461 274 RAFEALKFFRDMKE 287 (603)
Q Consensus 274 ~~~~A~~~~~~m~~ 287 (603)
..++|++.++....
T Consensus 165 ~~e~Al~~l~~~~~ 178 (765)
T PRK10049 165 LSAPALGAIDDANL 178 (765)
T ss_pred ChHHHHHHHHhCCC
Confidence 99999998876653
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=5.5e-16 Score=162.63 Aligned_cols=453 Identities=10% Similarity=0.022 Sum_probs=271.9
Q ss_pred HhcCCCChHHHHHHHHHHhhCCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007461 90 MLKDPQTQELAYDYYNEAKKLPEFRPEK--STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK 167 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 167 (603)
..++|+..+ |++.|+++.+. .|+. ..+ .++..+...|+.++|+.++++.... -+........+...+...|+
T Consensus 44 ~~r~Gd~~~-Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAP-VLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHH-HHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 345666654 78888777764 2332 233 7777777778888888888777611 12233333444556777788
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
+++|+++|+++.+..|.++..+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|.+.++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 888888888888777777777777777777778888888877777664 344444444433443455555577777777
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 327 (603)
.+.++.. ...+..+..++.+.|-..-|+++.++-... +.+ ..+..+ . .+.+.+..+. +..+
T Consensus 196 l~~~P~n----~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~--~~~~~l-~-------~~~~a~~vr~----a~~~ 256 (822)
T PRK14574 196 VRLAPTS----EEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA--EHYRQL-E-------RDAAAEQVRM----AVLP 256 (822)
T ss_pred HHhCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH--HHHHHH-H-------HHHHHHHHhh----cccc
Confidence 7765442 345666777777777777776655442211 111 111110 0 0111111110 1000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007461 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL-KISD-----CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 401 (603)
+..- --+.--.+.|+.-++.+...-. .|.. .+.--.+-++...+++.++++.|+.|...|.+....+
T Consensus 257 ~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 257 TRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred cccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 0000 0000123444444555444211 1211 1122345566777888888888888887776555567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKG-----FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC----------- 465 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------- 465 (603)
-..+.++|...+++++|..+|+.+.... .+++......|.-+|...+++++|..+++++.+..-
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 7778888888888888888888876542 123344456777888888888888888888876310
Q ss_pred CC--CH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 466 EP--NV-WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIA 542 (603)
Q Consensus 466 ~p--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 542 (603)
.| |- ..+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|+..++........ +..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHH
Confidence 01 11 223445566777888888888888887543 336667777888888888888888888766654222 44566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 543 GIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSA 580 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 580 (603)
...+..+...|++++|..+.+.+.+. .|+......|
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 67777777888888888888777754 4554444333
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.2e-15 Score=160.18 Aligned_cols=445 Identities=11% Similarity=0.048 Sum_probs=288.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA--HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
+.+...-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+........+..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 3343334444567777777777777776654 332 233 66666666777777777777776322334444444456
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 195 GYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
.|...|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++...++.. ..+-.++..+...++
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-----~~~l~layL~~~~~~ 184 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-----QNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-----HHHHHHHHHHHhcch
Confidence 677777777777777777766433 45555666667777777777777777766655431 223333333333455
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007461 275 AFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 353 (603)
..+|++.++++.+. .| +...+..+..++.+.|-...|.++.++-.+. .+......| +.+.|.+.++
T Consensus 185 ~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l--------~~~~~a~~vr 251 (822)
T PRK14574 185 NYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQL--------ERDAAAEQVR 251 (822)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHH--------HHHHHHHHHh
Confidence 55577777777765 33 4555566666666677666666555442110 011111110 0111111111
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHhcCChHHHHHHHHH
Q 007461 354 SMKNAKLKISDCISCAIVNGFSKRRG---YWAAVKVYEQLISQ-GCIPGQ-V----TYASIINAYCRIALYSKAEKVFIE 424 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~-g~~p~~-~----~~~~ll~~~~~~g~~~~a~~~~~~ 424 (603)
.. ..++. ....+ .+.|+.-++.+... +-.|.. . ...-.+-++...|+..++++.|+.
T Consensus 252 ~a----~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 252 MA----VLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred hc----ccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 00000 01112 34555556665542 222322 2 223445678889999999999999
Q ss_pred HHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG-----CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
+...+.+....+-..+.++|...+++++|+.+++.+.... ..++......|.-+|...+++++|..+++++.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 9988866456788999999999999999999999997642 12344446788999999999999999999998731
Q ss_pred C-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 500 V-------------TPDKV-SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 500 ~-------------~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
. .||-. .+..++..+...|++.+|++.++++....+. |......+.+.+...|.+.+|.+.++..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 12222 2455677788999999999999999886544 8889999999999999999999999887
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 566 KSEGTKLD-ERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 566 ~~~g~~~~-~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
... .|+ ..+......++...|++++|..+.+..
T Consensus 477 ~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 477 ESL--APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred hhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 754 454 566677788899999999998888655
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.2e-15 Score=153.23 Aligned_cols=493 Identities=13% Similarity=0.071 Sum_probs=308.6
Q ss_pred cCCCChHHHHHHHHHHhh-CCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---ccCC
Q 007461 92 KDPQTQELAYDYYNEAKK-LPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV---RARK 167 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~ 167 (603)
..+++.. |+.+|..+.. .+...||+.+ .+...+.+.|+.+.|+..|+...+.+ +.++.++..|.-.-. ....
T Consensus 176 nkkdY~~-al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 176 NKKDYRG-ALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred ccccHHH-HHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHH
Confidence 3345544 9999988653 3445666543 23356678889999999998888775 233344433332222 2234
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV--LDSGCYCQIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~ 245 (603)
+..+..++...-..++.++.+.+.|..-|.-.|+++.+..+...+...-.. .-...|-.+.++|-..|++++|...|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 566777777777777778888888888888888888888888777764311 123357778888888888888888887
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC----CHHHHHHHHHHH
Q 007461 246 ECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASIT----EVKLAEELFKEA 320 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g----~~~~a~~~~~~~ 320 (603)
+....+.... +..+--+.+.+.+.|+.+++...|+..... .| +..+...+...|+..+ ..+.|..++.+.
T Consensus 332 ~s~k~~~d~~---~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 332 ESLKADNDNF---VLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHccCCCCc---cccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 7766544321 233556778888888888888888888765 33 4456666666665553 345555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 007461 321 EEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESM----KNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ--- 393 (603)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 393 (603)
.+.- +.|...|-.+..+|....-+.. +..|... ...+-.+.....|.+...+...|.+++|...|......
T Consensus 407 ~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 5443 2345555555544444333322 3333322 22232344445555555555566666655555554433
Q ss_pred CCCCCH----------------------------------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC
Q 007461 394 GCIPGQ----------------------------------------VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC 433 (603)
Q Consensus 394 g~~p~~----------------------------------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 433 (603)
...+|. ..|..++......+...+|...++...... ..+
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 111111 112222211122244455555555554432 344
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCC
Q 007461 434 VVAYSSMVAMYGKTGRIRDAMWLVAKMKAK-GCEPNVWIYNSLMDMHGR------------AKNLRQVEKLWKEMERRKV 500 (603)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~ 500 (603)
+..++.+...+.+...+..|.+-|+.+.+. ...+|..+.-+|...|.. .+..++|+++|.+.++..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 455555555666666666666655555443 112455544444444432 235677888888888653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 007461 501 TPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE-GTKLDERLYHS 579 (603)
Q Consensus 501 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ 579 (603)
+-|...-|.+.-+++..|++++|..+|.+.++.... ...+|-.+..+|..+|++..|+++|+...+. +-.-+..+...
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 336677788888899999999999999999887442 4567778999999999999999999987776 33456788888
Q ss_pred HHHHHHhcCcHHHHHHHHh
Q 007461 580 AMNALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 580 ll~a~~~~g~~~~a~~~~~ 598 (603)
|.+++...|.+.+|.+.+.
T Consensus 722 Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 9999999999999887654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2e-15 Score=151.51 Aligned_cols=477 Identities=12% Similarity=0.081 Sum_probs=351.0
Q ss_pred CCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHH
Q 007461 93 DPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVL--PDAHTCSRLVASCVRARKFKI 170 (603)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~ 170 (603)
+.+....++.++..+.... +.++...+.|...+.--|++..++.+.+.+...... .-...|-.+.++|...|+++.
T Consensus 248 d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred chHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 3344455888888777654 557778999999999999999999999998866421 123457778899999999999
Q ss_pred HHHHHHHHHhcCCcc-hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC----CHHHHHHHHH
Q 007461 171 ANTLLQVFITDGEIA-LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG----DSEKVAALFL 245 (603)
Q Consensus 171 a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~ 245 (603)
|...|.+..+..+.+ +..+--|...|.+.|+.+.+...|+.+.+.. +-+..+...|...|+..+ ..+.|..++.
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 999999988877765 6677788999999999999999999998863 336677778888888775 4566666666
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 246 ECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMK----EKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
+..... +.|..+|-.+...+....-+.. +.+|.... ..+-.+.....|.+.......|+++.|...|+...
T Consensus 405 K~~~~~----~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 405 KVLEQT----PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcc----cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 555544 4456788888888777665555 77776543 45556788899999999999999999999999887
Q ss_pred Hc---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 322 EK---GMLRDP------EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 322 ~~---~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
.. ...+|. .+--.+...+-..++.+.|.+.|..+....+. -...|--+.......+...+|...++....
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 65 122222 23334566667778999999999999887652 111222222222234667788888888776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHc------------cCCHHHHHHHHHH
Q 007461 393 QGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG-FDKCVVAYSSMVAMYGK------------TGRIRDAMWLVAK 459 (603)
Q Consensus 393 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~ 459 (603)
.. ..++..+..+...+.+...+..|.+-|+...+.- ..+|..+.-.|.+.|.+ .+..++|+++|.+
T Consensus 559 ~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 559 ID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred cc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 43 3444555566667777888888888777766542 23566666666665543 2456789999998
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 007461 460 MKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG-VID 538 (603)
Q Consensus 460 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 538 (603)
.+... +-|...-|.+.-+++..|++.+|..+|....+... -+..+|..+..+|..+|++..|+++|+...+.-. .-+
T Consensus 638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88752 44677778888889999999999999999987643 2446788999999999999999999998766543 456
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 581 (603)
..+...|..++.+.|.+.+|.+.+.........-....|+..+
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 7788899999999999999999988887664443445555443
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=6e-13 Score=128.18 Aligned_cols=480 Identities=11% Similarity=0.001 Sum_probs=359.5
Q ss_pred HHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 102 DYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 102 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
++++++.++ ++.++..|... +...+.+.|+-++....+. ++.+...|. +|++..-|+.|..++..+.+.
T Consensus 367 RVlRKALe~--iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHh--CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 344444443 23334444432 2344556677777776654 244444444 455667788999999999998
Q ss_pred CCcchhhHHHHHhhhhhcCcHHHHHHHHHH----HHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc
Q 007461 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEK----MKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPF 257 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 257 (603)
-|.+..+|.+....--.+|+.+...+++++ +...|+..+..-|..=...|-+.|.+-.+..+...+...++....
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed- 514 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED- 514 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch-
Confidence 888999999999888899998888887765 345688888888888888899999999999998888877765433
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007461 258 STHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVL 337 (603)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
--.+|+.-.+.|.+.+.++-|..+|...++. ..-+...|......--..|..+....+++++...- +-....|.....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ak 592 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAK 592 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHH
Confidence 2357899999999999999999999888775 22255667666666667888899999999888763 335566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 007461 338 MYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417 (603)
Q Consensus 338 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 417 (603)
-+-..|++..|..++...-+.++. +..+|-.-+..-..+..++.|..+|.+.... .|+...|.--+..-.-.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 788889999999999998888775 7778888888889999999999999888764 4666666666666666788899
Q ss_pred HHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 497 (603)
|.+++++..+. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.|.+.--+.|.+-.|..++++..-
T Consensus 670 A~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 99999888776 4555667788888888888888888888777665 444566677777777778888888888888765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------------------------CCCCHHHHHHHHHH
Q 007461 498 RKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG-----------------------------GVIDRAIAGIMVGV 548 (603)
Q Consensus 498 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~ 548 (603)
.+. -|...|...|+.=.+.|+.+.|..+..++.+.- ..-|+...-.+...
T Consensus 748 kNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 543 356678888888888888888877776655421 22344455556667
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhccC
Q 007461 549 FSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602 (603)
Q Consensus 549 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 602 (603)
|....++++|.+.|.+.++.+ +....+|..+..-...+|..+.-.+++..++.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 777788999999999999764 34467888889999999998888888887753
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=1.7e-13 Score=137.00 Aligned_cols=364 Identities=13% Similarity=0.092 Sum_probs=279.7
Q ss_pred HHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 007461 89 GMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF 168 (603)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 168 (603)
.+...|+..+ |.+++.++++.. +.+...|..|...|-..|+.+.+...+-.+.-.+ +.|..-|..+.....+.|.+
T Consensus 148 ~lfarg~~ee-A~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 148 NLFARGDLEE-AEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHhCCHHH-HHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 3445577776 999999999874 5677889999999999999999998877665554 66778999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHHcCCHHHHHHHH
Q 007461 169 KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCY----CQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~g~~~~a~~~~ 244 (603)
++|.-+|.+..+..|++....---...|-+.|+...|.+.|.++.+...+.|..-. -.+++.+...++.+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999988777777788899999999999999999987543233322 23456677778889999999
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---------------------------CHHHH
Q 007461 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE---------------------------DPSIY 297 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~~~~~ 297 (603)
+........ ..+...++.++..|.+...++.+.....++.....++ +...
T Consensus 304 e~~~s~~~~--~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 304 EGALSKEKD--EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHhhccc--cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 887763211 1223469999999999999999999998887622222 2222
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEKGMLR--DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 375 (603)
..+.-++.+....+....+.....+.+..+ +...|.-+.++|...|++.+|.++|..+......-+..+|..+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122334446666677777777777776433 567888999999999999999999999998877777889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HcCCCcCHhhHHHHHHHHHcc
Q 007461 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQ--------QKGFDKCVVAYSSMVAMYGKT 447 (603)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~ 447 (603)
..|.+++|++.|+...... +-+...-..|-..+-+.|+.++|.+.+..+. ..+..|+....-...+.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999988753 2233455566677889999999999999854 223455666666667777888
Q ss_pred CCHHHHHHHHHHH
Q 007461 448 GRIRDAMWLVAKM 460 (603)
Q Consensus 448 g~~~~A~~~~~~m 460 (603)
|+.++-..+...|
T Consensus 540 gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 540 GKREEFINTASTL 552 (895)
T ss_pred hhHHHHHHHHHHH
Confidence 8877755544444
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.2e-14 Score=129.35 Aligned_cols=421 Identities=12% Similarity=0.084 Sum_probs=273.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHHHHhh---hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGE-IALLAFNSAMGG---YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQI 227 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 227 (603)
+.+=+.|+.. ...|.+.++.-+++.|.+.+. .+...-..|++. |....-+-.-.+.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 3455555553 456888899999999988776 344444444433 32222222223344445444432 22222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007461 228 MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASI 307 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 307 (603)
+.|++.+ -+|+..++. ..+|..||.++++--..+.|.++|++-.....+.+..+||.+|.+..-.
T Consensus 191 -----K~G~vAd--L~~E~~PKT--------~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPKT--------DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred -----ccccHHH--HHHhhcCCC--------chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 3344433 333322221 1478899999999988999999999888887788888999888876533
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH-
Q 007461 308 TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKT----LDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA- 382 (603)
Q Consensus 308 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~- 382 (603)
. ..+++.+|....+.||..++|+++.+..+.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 2 377888888888889999999999999999987654 5677788889999999999999988888877654
Q ss_pred HHHHHHHHHH----cCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcC---HhhHHHHHHHHHcc
Q 007461 383 AVKVYEQLIS----QGCIP----GQVTYASIINAYCRIALYSKAEKVFIEMQQK----GFDKC---VVAYSSMVAMYGKT 447 (603)
Q Consensus 383 a~~~~~~m~~----~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~ 447 (603)
+..++.++.. +.++| |...|...+..|.+..+.+.|.++..-+... -+.|+ ..-|..+..+.++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444433 22222 4456777888888888888888877766532 12232 23456677777888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH------
Q 007461 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAR-EF------ 520 (603)
Q Consensus 448 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~------ 520 (603)
...+.-...++.|.-.-+-|+..+...++++....|.++-..++|.+++..|..-+.....-++..+++.. ..
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 88888888888888766778888888888888888888888888888887765544444444444444332 11
Q ss_pred --H-----HHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHH
Q 007461 521 --D-----MCVKFY-------NEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT----KLDERLYHSAMN 582 (603)
Q Consensus 521 --~-----~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~ll~ 582 (603)
. -|..++ .++++ ........+.+.-.+.|.|..++|.+++.-..+.+- .|.......+++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 0 011111 12222 233455566677778888888888888888765532 233333345556
Q ss_pred HHHhcCcHHHHHHHHh
Q 007461 583 ALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 583 a~~~~g~~~~a~~~~~ 598 (603)
+-...+..-.|..+++
T Consensus 570 ~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQ 585 (625)
T ss_pred HHHhcCCHHHHHHHHH
Confidence 6566666666665554
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.3e-14 Score=133.49 Aligned_cols=462 Identities=11% Similarity=0.064 Sum_probs=318.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHhcCC-c----chhhHHHH
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC-SRLVASCVRARKFKIANTLLQVFITDGE-I----ALLAFNSA 192 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~----~~~~~~~l 192 (603)
++..|.+.|..+....+|+..|+-+.+...-|+.-.. ..+.+.+.+.+.+..|++.++.....-| . ...+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3445667777788889999999988877666665332 3355667788899999999998776544 2 34567777
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------CccHHHHH
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDST---------PFSTHMYK 263 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~ 263 (603)
...+.+.|.++.|+..|+...+. .||..+-..|+-++...|+-++..+.|..|......++ .|+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 78899999999999999998875 57877777777788889999999999999875432221 12222222
Q ss_pred H-----HHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHH-------------HH--------HHHHHHHccCCHHHHHH
Q 007461 264 I-----LCDSLGKSGR--AFEALKFFRDMKEKGILEDPSI-------------YA--------SLICSFASITEVKLAEE 315 (603)
Q Consensus 264 ~-----li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~-------------~~--------~ll~~~~~~g~~~~a~~ 315 (603)
. .+.-..+... .+.++-.--+++.--+.||... +. .-...+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2 2222222221 2222222222222222333110 00 01122457788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIE--EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ 393 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (603)
+++-+.+..-..-....+.|-..+.- -.++..|...-+.....+- -+......-.+....+|++++|.+.|++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 88888776544333334433333333 2346666666665544332 12212222222334578999999999998865
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 007461 394 GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYN 473 (603)
Q Consensus 394 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 473 (603)
.-.-....|++= -.+-..|++++|++.|-++... +..+..+...+...|-...+...|++++-+.... ++.|+.+.+
T Consensus 520 dasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 432222333332 2456789999999999888654 2446778888889999999999999999887765 566889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hcc
Q 007461 474 SLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVF-SKL 552 (603)
Q Consensus 474 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 552 (603)
-|...|-+.|+-.+|.+.+-+--. -++-|..+...|...|....-+++++.+|++..- +.|+..-|..++..| .+.
T Consensus 597 kl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 999999999999999988766543 2556778888898889988889999999998765 679999999888755 568
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 007461 553 SQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQ 590 (603)
Q Consensus 553 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~ 590 (603)
|++++|.++++....+ ++.|...+.-|++.|...|..
T Consensus 674 gnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999999999999875 788899999999999888764
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.5e-13 Score=123.37 Aligned_cols=238 Identities=15% Similarity=0.164 Sum_probs=111.4
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+..++..+|.++++--..++|.+++++-.....+.+..+||.+|.+-.-.-+ .+++.+|......| |..|+|+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P---nl~TfNa 278 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP---NLFTFNA 278 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC---chHhHHH
Confidence 4445555555555555555555555544444444444455544443322211 34444444444433 2345555
Q ss_pred HHHHHhccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHc----CCC----CCHHH
Q 007461 265 LCDSLGKSGRAFE----ALKFFRDMKEKGILEDPSIYASLICSFASITEVKL-AEELFKEAEEK----GML----RDPEV 331 (603)
Q Consensus 265 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~----~~~----~~~~~ 331 (603)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++... .+. .|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 5555555554433 33444555555555555555555555555444322 22222222211 111 12333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAK----LKIS---DCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYAS 404 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 404 (603)
+..-|..|.+..+.+-|.++..-+...+ +.|+ ..-|..+....++....+.-...|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 4444444555555555554444333211 1111 11133444455555555555666666655544555556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
++++..-.|.++-.-+++..++..|
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhh
Confidence 6666666666666666666655554
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.4e-12 Score=130.60 Aligned_cols=475 Identities=11% Similarity=0.042 Sum_probs=335.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (603)
..+..+...|+.++|..++.+.++.. +.....|-.|...|-..|+.+.+...+-.+-...|.|..-|..+.....+.|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 34444555699999999999999887 77889999999999999999999988888888888889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHhccCCHHHHHH
Q 007461 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP-FSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
+.+|.-+|.+.++... ++...+-.-...|-+.|+...|..-|.++....+..+- .....--.++..+...++-+.|++
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998753 35555556677899999999999999999887662210 001122234566777788899999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---------------------------CCCCHHHH
Q 007461 281 FFRDMKEK-GILEDPSIYASLICSFASITEVKLAEELFKEAEEKG---------------------------MLRDPEVC 332 (603)
Q Consensus 281 ~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 332 (603)
.++..... +-..+...++.++..+.+...++.+........... +.++..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 99888763 223355677888888888888888888777766521 2222233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMKNAK--LKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 410 (603)
-.++-++......+....+.....+.+ +.-+...|.-+..+|...|.+.+|+.+|..+......-+...|-.+...|-
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 123344445555555555555555555 444556688899999999999999999999998765566778889999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH--------HcCCCCCHhHHHHHHHHHHhc
Q 007461 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK--------AKGCEPNVWIYNSLMDMHGRA 482 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~ 482 (603)
..|..++|.+.|+...... +.+...--.|...+-+.|++++|.++++.+. ..+..|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999875 5667777888888999999999999999964 223455566666667778888
Q ss_pred CCHHHHHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC
Q 007461 483 KNLRQVEKLWKEMERRK----------------------VTPDKVSYTTVISAYNRAREFDMCVKFYNEF------RMNG 534 (603)
Q Consensus 483 g~~~~a~~~~~~m~~~~----------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~------~~~~ 534 (603)
|+.++-..+...|+... ..-...+...++.+-.+.++......-...- ...+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 88887655555543321 1111222233333333444332222222111 1112
Q ss_pred CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 535 GVIDR--AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTK-LDER----LYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 535 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~----~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+..+. ..+.-++..+.+.|++++|..+...+.+.... -+.. .-...+.++...+++..|...+..+
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22222 13455777888999999999999988875332 2222 2334556778889999988877665
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=6.5e-12 Score=121.21 Aligned_cols=449 Identities=10% Similarity=0.064 Sum_probs=244.4
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
|.-++.++.+. ++.+...|.+ |++...++.|..++.+.++. ++.+...|.+....=-.+|+.+...+++++-.
T Consensus 395 arilL~rAvec--cp~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 395 ARILLERAVEC--CPQSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHHHHHHHHHh--ccchHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 66666666654 2334444433 44455566777777766654 45566666665555555666666655555422
Q ss_pred ----hcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 180 ----TDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL--DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 180 ----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
..+. .+...|..=...|-+.|..-.+..+....+..|+.- -..||..-...|.+.+.++-|+.+|....+-.+
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 2222 355555555555555555555555555555555432 123555555556666666666666655544433
Q ss_pred CCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007461 253 DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVC 332 (603)
Q Consensus 253 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 332 (603)
.. ...|...+..--..|..++-..+|++.... ++-....|.......-..|++..|+.++..+.+.... +..+|
T Consensus 548 ~k----~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 548 CK----KSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred ch----hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 22 234555555555555555555555555543 1112233333334444455555555555555554422 44555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG-QVTYASIINAYCR 411 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 411 (603)
.+-+.......+++.|..+|.+..... ++..+|.--+..---.+..++|++++++..+. -|+ ...|..+.+.+-+
T Consensus 622 laavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 555555555555555555555554432 33344444444444455555555555554443 122 2234444445555
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKL 491 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 491 (603)
.++++.|...|..-.+. ++..+..|-.|.+.=-+.|.+-+|..++++..-++ +-|...|-..|+.-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555443332 23344445555555455555555555555554432 23444555555555555555555544
Q ss_pred HHHHHhC-----------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 492 WKEMERR-----------------------------KVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIA 542 (603)
Q Consensus 492 ~~~m~~~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 542 (603)
..+.++. ...-|......+...+....++++|.+.|.+.++.+.. ...+|
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~w 854 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAW 854 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHH
Confidence 4433321 11234555666667777788999999999999986533 34678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 543 GIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.-+...+.+.|.-++-.+++.+....
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 88888999999888888888887754
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.3e-11 Score=113.09 Aligned_cols=450 Identities=10% Similarity=0.030 Sum_probs=334.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+.+...|-.-.+-=...+++..|.++|+....-+ ..+...|.--+..=.++..+..|+.+++.....-|.-...|-..+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4456666666666667788899999999988665 556667777778778888999999999998877665556676677
Q ss_pred hhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 273 (603)
..--..|+...|.++|++-.+ ..|+...|.+.++.-.+...++.|..+++...--.+ ++..|--....=.+.|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-----~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-----KVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-----cHHHHHHHHHHHHhcC
Confidence 777778999999999998876 478999999999999999999999999998765443 3567888888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007461 274 RAFEALKFFRDMKEKGILEDPSIYASLICSF----ASITEVKLAEELFKEAEEKGMLR-DPEVCLKLVLMYIEEGLVEKT 348 (603)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 348 (603)
....|..+|....+. ..|...-..++.++ .+...++.|.-+++.+++.-... ....|..+...--+-|+....
T Consensus 222 ~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 222 NVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred cHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh
Confidence 999999999888764 22333333344444 35678899999999988763221 145666666665666765544
Q ss_pred HHH--------HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---H
Q 007461 349 LDV--------VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV-------TYASIINAY---C 410 (603)
Q Consensus 349 ~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~ 410 (603)
.+. ++.+...++ .|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+--+| .
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344455554 46667877888888889999999999999875 344221 222221222 3
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHH----HccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 007461 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY----GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLR 486 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 486 (603)
...+++.+.++|+...+. ++....||.-+=-+| .++.++..|.+++..... ..|-..++...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHH
Confidence 568899999999999884 566666666554444 467889999999988775 4889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 487 QVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG-VIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 487 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
.+.+++++.++.+.. |..+|.-....=...|+.+.|..+|+-++.... ......|...|+.-...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 999999999976533 667788777777788999999999999987632 233457888888888999999999999999
Q ss_pred HhCCCCCCHHHHHHHH
Q 007461 566 KSEGTKLDERLYHSAM 581 (603)
Q Consensus 566 ~~~g~~~~~~~~~~ll 581 (603)
++.. +...+|.+..
T Consensus 534 L~rt--~h~kvWisFA 547 (677)
T KOG1915|consen 534 LDRT--QHVKVWISFA 547 (677)
T ss_pred HHhc--ccchHHHhHH
Confidence 8762 3333454443
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.8e-11 Score=113.86 Aligned_cols=437 Identities=10% Similarity=0.017 Sum_probs=330.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
+...|..-..-=...+++..|+.+|+..+..+..+...|...+..-.++..+..|..++++.+..=+..|. .|--.+.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHH
Confidence 33344333333345677889999999999988899999999999999999999999999998875333232 34445555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 310 (603)
--..|++..|.++|+...+..+ +..+|++.|+.=.+-+..+.|..+|++..-. .|+..+|......-.+.|++
T Consensus 151 EE~LgNi~gaRqiferW~~w~P-----~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEP-----DEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 6678999999999998876544 3478999999999999999999999998764 69999999888888899999
Q ss_pred HHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCC---HHHHH
Q 007461 311 KLAEELFKEAEEK-G-MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKIS-DCISCAIVNGFSKRRG---YWAAV 384 (603)
Q Consensus 311 ~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~---~~~a~ 384 (603)
..++.+++.+.+. | -..+...+.++...-.++..++.|.-+|.-..+.-++-. ...|..+...=-+-|+ .++++
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999998875 2 112345666777777788899999999998887654322 2223333332233444 34443
Q ss_pred H-----HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH--hhHHHHHH-----HH---HccCC
Q 007461 385 K-----VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCV--VAYSSMVA-----MY---GKTGR 449 (603)
Q Consensus 385 ~-----~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-----~~---~~~g~ 449 (603)
- -|+.+.+.+ +-|-.++-..+..-...|+.+...++|+..+.. ++|-. ..|.-.|- ++ ....+
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 234444443 456667777777778889999999999999876 35521 12222221 11 24688
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMH----GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVK 525 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 525 (603)
++.+.++++..++. ++....|+.-+--.| .++.++..|.+++-..+ |.-|...+|...|..=.+.+++|.+..
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999984 455566665554444 46889999999999998 778999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 526 FYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT-KLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
++++.++-++. +..+|......-...|+.+.|..+|+-.+++.. ......|.+.++-=...|.++.|+.+++++-
T Consensus 459 LYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 459 LYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 99999997544 667888888888889999999999999988742 2335677788887789999999999999863
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2.1e-13 Score=125.61 Aligned_cols=185 Identities=9% Similarity=0.050 Sum_probs=146.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 007461 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVE 489 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 489 (603)
...|++++|.+.+++.......-....|| +.-.+-+.|+.++|++.|-++..- +..+..+.-.+...|....+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34689999999999988765333333343 344567789999999999887653 3457777788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 007461 490 KLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG 569 (603)
Q Consensus 490 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 569 (603)
+++-+.... ++.|+..+.-|...|-+.|+-..|...+-+--+ .+..+..+..-|...|....-+++++.+|++.. =
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 999888743 555677899999999999999999887654332 244577788888888889999999999999876 4
Q ss_pred CCCCHHHHHHHHHHH-HhcCcHHHHHHHHhhc
Q 007461 570 TKLDERLYHSAMNAL-RDAGLQMQAQWLQQNF 600 (603)
Q Consensus 570 ~~~~~~~~~~ll~a~-~~~g~~~~a~~~~~~~ 600 (603)
+.|+..-|..++.+| ++.|++.+|..+++.+
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 689999999999776 5789999999999875
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.7e-12 Score=125.97 Aligned_cols=284 Identities=9% Similarity=0.041 Sum_probs=178.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHH
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE--VCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~ 349 (603)
.|+++.|.+.+....+.+-.| ...|.....+..+.|+.+.+.+.+.++.+.. |+.. ........+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555443321111 1122222333356666666666666665542 3322 2223355666677777777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 007461 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ-------VTYASIINAYCRIALYSKAEKVF 422 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~ 422 (603)
+.++.+.+.++. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777776666643 4455666667777777777777777777765543222 12333333333444555666666
Q ss_pred HHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007461 423 IEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502 (603)
Q Consensus 423 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 502 (603)
+.+.+. .+.++.....+...+.+.|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.. +-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 665443 2556777788888888888888888888888774 4554322 2334445588888888888887653 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 503 DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455778888888888888888888888774 57777777888888888888888888887654
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=9.5e-12 Score=116.18 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=117.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007461 340 IEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAE 419 (603)
Q Consensus 340 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 419 (603)
.-+|+.-.|..-|+.....+..++. .|-.+...|....+.++-.+.|.+..+.+ +-|+.+|..-.+...-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3345555566666665555543332 24445555566666666666666655543 234444555555555556666666
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
.=|++.+... +-+...|-.+--+..|.+++++++..|++.+++ ++.-+..|+.....+...+++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 6666655543 334445555555555566666666666666554 4444556666666666666666666666665532
Q ss_pred CCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 500 VTPD-------K--VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 500 ~~p~-------~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
.|+ . ..--.++ .+...+++..|.+++++..+.+.+ ....|..|...-.+.|+.++|+++|++..
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222 1 1111111 112336666666666666664333 22345566666666666666666666554
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=3.8e-12 Score=126.68 Aligned_cols=289 Identities=10% Similarity=0.039 Sum_probs=181.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007461 271 KSGRAFEALKFFRDMKEKGILEDP-SIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 271 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 349 (603)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.+.+.+..+.+....+...+.......+...|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777666554 3332 2333344555667777777777777765432222234444567777778888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCChHHHHHHHHHH
Q 007461 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYA-SIINAY---CRIALYSKAEKVFIEM 425 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~ 425 (603)
+.++.+.+..+. +..++..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888877777653 4456777777788888888888888887777643 222221 111111 2222223333344444
Q ss_pred HHcC---CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 426 QQKG---FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI---YNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 426 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 4332 1236778888888888888888888888888875 344331 111112223346777788887777654
Q ss_pred CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 500 VTPDK---VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 500 ~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
.|+. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333 445677788888888888888888544444567777777888888888888888888887543
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=2.7e-12 Score=127.73 Aligned_cols=288 Identities=11% Similarity=0.046 Sum_probs=214.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDP-EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAV 384 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 384 (603)
..|+++.|++.+....+.. |++ ..+-.....+...|+.+.|.+.+.+..+..+.+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 5799999999998887754 443 3344556778889999999999999877654433334444578888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH-HHHHHH---HccCCHHHHHHHHHHH
Q 007461 385 KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS-SMVAMY---GKTGRIRDAMWLVAKM 460 (603)
Q Consensus 385 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m 460 (603)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+..+ ...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999876 3456678889999999999999999999999987433 33332 111111 2223333333455554
Q ss_pred HHcC---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 461 KAKG---CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS---YTTVISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 461 ~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4431 1237888999999999999999999999999875 344432 1222222334578899999999888764
Q ss_pred CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 535 GVIDR--AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 535 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
.. |+ ....++.+.+.+.|++++|.+.|+........||...+.++...+.+.|+.++|.+++++-
T Consensus 330 p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 44 6678999999999999999999996444345799999999999999999999999999863
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=4.4e-12 Score=125.45 Aligned_cols=282 Identities=11% Similarity=0.030 Sum_probs=220.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007461 307 ITEVKLAEELFKEAEEKGMLRDPEVCLKL-VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 385 (603)
.|+++.|++.+....+.. .++..+..+ .....+.|+++.|.+.+.++.+................+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888765542 234444433 44458999999999999999876554332222234678889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-------hhHHHHHHHHHccCCHHHHHHHHH
Q 007461 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCV-------VAYSSMVAMYGKTGRIRDAMWLVA 458 (603)
Q Consensus 386 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 458 (603)
.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999876 446677888999999999999999999999988644222 133344444445566677777777
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007461 459 KMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVID 538 (603)
Q Consensus 459 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 538 (603)
.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.... |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 77554 3558888899999999999999999999999864 455532 2344445669999999999999987544 6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
+..+..+...+.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677889999999999999999999999965 69999999999999999999999999875
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.6e-12 Score=112.16 Aligned_cols=291 Identities=12% Similarity=0.071 Sum_probs=146.3
Q ss_pred CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007461 166 RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 245 (603)
++.++|.++|-+|.+.++.+.++.-+|...|.+.|..++|+.+++.+.++ ||..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT----------------------- 102 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLT----------------------- 102 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCc-----------------------
Confidence 45566666666666655555555666666666666666666666655553 2211
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 007461 246 ECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 325 (603)
...-..+...|..-|...|-+|.|.++|..+.+.| .--......|+..|-...+|++|.++-+++.+.+-
T Consensus 103 ---------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 103 ---------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred ---------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 11111222333344444444444444444444332 11223344444444444555555554444444432
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007461 326 LRD----PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401 (603)
Q Consensus 326 ~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 401 (603)
.+. ...|.-|...+....+++.|..++.+..+.+++ .+.+--.+.+.....|+++.|++.++...+.+..--..+
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 221 112333444444445555555555555555442 222223344555566666666666666665543333345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
...+..+|.+.|+.++....+..+.+.. +....-..+.+.-....-.+.|...+.+-..+ +|+...+..+|.....
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 5666667777777777777777666542 22333334444333344455555555444443 5777777777765443
Q ss_pred ---cCCHHHHHHHHHHHHh
Q 007461 482 ---AKNLRQVEKLWKEMER 497 (603)
Q Consensus 482 ---~g~~~~a~~~~~~m~~ 497 (603)
.|...+...+++.|+.
T Consensus 328 daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccccchhhhHHHHHHHHH
Confidence 3344555556666653
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.9e-10 Score=106.98 Aligned_cols=382 Identities=12% Similarity=0.108 Sum_probs=252.5
Q ss_pred cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHH
Q 007461 184 IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYK 263 (603)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 263 (603)
.|...+-.....+.+.|....|+..|...+.. -+..|..-+....-..+.+.+..+....... . ....=-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~----~--h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSD----M--HWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCccc----c--hHHHHH
Confidence 34444444445566677788888888776653 1223444433333333333333322111110 0 001112
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHH
Q 007461 264 ILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM--LRDPEVCLKLVLMYIE 341 (603)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 341 (603)
.+..++-...+.++++.-.+.+...|..-....-+....+.-...|+++|+.+|+++.+... .-|..+|..++..--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 23455555567788888888888777654444444444455577889999999999988742 1255667665543333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKV 421 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 421 (603)
+.++.---...-.+.+- -..|..++.+-|.-.++.++|+.+|++..+.+ +-....|+.+..-|....+...|.+-
T Consensus 312 ~skLs~LA~~v~~idKy----R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKY----RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHHHHHHHHHHHHhccC----CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 22222111111122222 22367888888899999999999999988865 33456778888889999999999999
Q ss_pred HHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007461 422 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501 (603)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 501 (603)
++...+.. +.|-..|-.|.++|.-.+.+.-|+-.|++..+. -+.|...|.+|..+|.+.++.++|++.|++....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999875 778889999999999999999999999998875 24588999999999999999999999999988765 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 007461 502 PDKVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVIDRAIA---GIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE 574 (603)
Q Consensus 502 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 574 (603)
.+...+..|.+.|-+.++.++|...|++.++. |.. +..+. --|...+.+.+++++|......... | .+..
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~ 540 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETEC 540 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchH
Confidence 35578899999999999999999999887653 222 22221 2255677788888888876655543 2 4444
Q ss_pred HHHHHHHHHHHh
Q 007461 575 RLYHSAMNALRD 586 (603)
Q Consensus 575 ~~~~~ll~a~~~ 586 (603)
.--..|++-+++
T Consensus 541 eeak~LlReir~ 552 (559)
T KOG1155|consen 541 EEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=9.9e-15 Score=137.92 Aligned_cols=259 Identities=15% Similarity=0.147 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYN-VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
.+...+.+.|++++|+++++...... .+.+..-|..+...+...++++.|+..++++...++.++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44666667777777777775433332 123334444444455556667777777777766655555566666655 5666
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
++++|.++++...+.. ++...+...+..+.+.++++++.++++.+...... +.+...|..+...+.+.|+.++|++
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666554432 34445555666666666666666666665542211 1234455566666666666666666
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 281 FFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359 (603)
Q Consensus 281 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 359 (603)
.|++..+. .| |......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|...|++....+
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 66666554 33 34445555555555555555555555554432 2233344444444555555555555554444433
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 360 LKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389 (603)
Q Consensus 360 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (603)
+ .|..+...+..++...|+.++|.++.++
T Consensus 245 p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 245 P-DDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp T-T-HHHHHHHHHHHT--------------
T ss_pred c-cccccccccccccccccccccccccccc
Confidence 2 1333333444444444444444444433
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.3e-11 Score=113.63 Aligned_cols=415 Identities=14% Similarity=0.086 Sum_probs=261.6
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 84 DSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE-KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
...-..+.+++.+.+ |+++|.++++. .|+ +..|.....+|...|+|+.+.+-..+..+.+ +.-+.++..-.+++
T Consensus 119 K~~GN~~f~~kkY~e-AIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDE-AIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HhhhhhhhhcccHHH-HHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 334455778888887 99999999976 677 7788899999999999999999888887765 23345666667777
Q ss_pred HccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHH-HHhCC--CCCChhhHHHHHHHHHHcCCHH
Q 007461 163 VRARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEK-MKSAG--IVLDSGCYCQIMEAYYKIGDSE 238 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~--~~p~~~~~~~ll~~~~~~g~~~ 238 (603)
-..|++++|+.=.....-.+. .+..+--.+=+.+-+ .|..-..+ +.+.+ +-|+.....+....+-.. +.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc
Confidence 777888777532222111111 111111111111111 11111111 22111 233333222222222100 00
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHC-CCCC-----CHH------HHHHHH
Q 007461 239 KVAALFLECKSRKLDSTPFSTHMYKILCDSLGK-----SGRAFEALKFFRDMKEK-GILE-----DPS------IYASLI 301 (603)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~-g~~p-----~~~------~~~~ll 301 (603)
.. .....+ .+...+..++.. ...+..|.+.+.+-... -..+ |.. +.....
T Consensus 267 ------~~---~~~~~~----ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 267 ------PL---FDNKSD----KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ------cc---ccCCCc----cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 00 000000 011111111110 01233333333221110 0001 111 111111
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 007461 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381 (603)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 381 (603)
..+.-.|+...+.+-|+..++.... +...|-.+..+|....+.++-...|....+.++. +..+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 1223468888999999999887643 3333777788899999999999999999998874 6668888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
+|+.=|++.++.. +-+...|.-+.-+..+.++++++...|++.+++ ++..+.+|+.....+...+++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999998764 345567777777778899999999999999887 68889999999999999999999999999987
Q ss_pred HcCCCCC-------H--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 462 AKGCEPN-------V--WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 462 ~~~~~p~-------~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
+. .|+ . .+--.++. +.-.+++..|.+++++.++. .|.. ..|..|...-.+.|+.++|+++|++..
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 64 333 1 11122221 22348999999999999965 4443 579999999999999999999999875
Q ss_pred H
Q 007461 532 M 532 (603)
Q Consensus 532 ~ 532 (603)
.
T Consensus 565 ~ 565 (606)
T KOG0547|consen 565 Q 565 (606)
T ss_pred H
Confidence 4
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=1.3e-11 Score=123.14 Aligned_cols=455 Identities=13% Similarity=0.085 Sum_probs=242.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHH
Q 007461 112 EFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNS 191 (603)
Q Consensus 112 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (603)
|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+. .|...+|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYTN 88 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------CCchhHHHH
Confidence 55666666666666666666666665 6666655555555556666665555555544332 345556666
Q ss_pred HHhhhhhcCcHHH---HHHHHHHHHh----CC-----------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 192 AMGGYNKLHMYYS---TILVYEKMKS----AG-----------------IVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 192 l~~~~~~~~~~~~---a~~~~~~m~~----~~-----------------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
|..+|.+.|+... ..+.++.+.. .| ..||.. ..+....-.|-++.+.+++..+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 6666666655432 2221111111 11 122221 2223333445555555555444
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGR-AFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML 326 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 326 (603)
+...... + ...+++-...... +++-...-+...+ .|+..+|..++..-...|+++.|..++.+|.+.|++
T Consensus 166 Pvsa~~~-p-----~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 166 PVSAWNA-P-----FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred Ccccccc-h-----HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3222111 0 1111222222222 2222222222221 467777777777777777777777777777777776
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH------------------------
Q 007461 327 RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA------------------------ 382 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~------------------------ 382 (603)
.+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+-.+..+|....
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 666666665544 66666666677777777777777776655555544332211
Q ss_pred H------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHhhHHHHHHHHHcc
Q 007461 383 A------------VKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK---GFDKCVVAYSSMVAMYGKT 447 (603)
Q Consensus 383 a------------~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~ 447 (603)
| +..+.+..-.|+......|..... ....|.-++.+++-..+..- .-..++..|..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 1 111111111122222222222222 22345555555555554321 1112344444444444332
Q ss_pred CC----------------------HHHHHHHHHHHHHcCCCCC----------------------------HhHHHHHHH
Q 007461 448 GR----------------------IRDAMWLVAKMKAKGCEPN----------------------------VWIYNSLMD 477 (603)
Q Consensus 448 g~----------------------~~~A~~~~~~m~~~~~~p~----------------------------~~~~~~li~ 477 (603)
-+ ..+..+..... .|| ...-+.++-
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 11 11111111111 122 112244444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCH
Q 007461 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG--GVIDRAIAGIMVGVFSKLSQI 555 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 555 (603)
.++..-+..+++..-+.....-+ | ..|..||+-+......+.|..+.++..... ...|..-+..+.+.+.+.+..
T Consensus 468 ~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 55555555555544444332211 1 468899999999999999999999886543 335666788899999999999
Q ss_pred HHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 556 EELVKLLQDMKSEGTKL--DERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 556 ~~A~~~~~~m~~~g~~~--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
.++.++++++.+.-..- ...++..+++.....|+.+...++.+-+.
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 99999999998853222 36778888899999999998888776554
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.7e-14 Score=136.34 Aligned_cols=224 Identities=12% Similarity=0.114 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007461 334 KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA 413 (603)
Q Consensus 334 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 413 (603)
.+.......++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+.. ++...+...+..+.+.+
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHh
Confidence 3333334444444444444444433321 22223333333 34444444444444333221 23333344444444444
Q ss_pred ChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 007461 414 LYSKAEKVFIEMQQKG-FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGRAKNLRQVEKL 491 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 491 (603)
+++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++..+. .| |....+.++..+...|+.+++..+
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 5555554444443221 2233444444444444455555555555544443 22 244444444444444544444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 492 WKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 492 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
++...+.. +.|...+..+..+|...|+.++|+.++++..+.... |+.....+.+++...|+.++|.++.++.
T Consensus 203 l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 203 LKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT---------------
T ss_pred HHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 44443321 223333444444444445555555555544443211 4444444444455555555554444433
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2e-11 Score=108.26 Aligned_cols=225 Identities=14% Similarity=0.050 Sum_probs=131.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc----chhhHHHHHhhhhhcCcHHHH
Q 007461 130 SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI----ALLAFNSAMGGYNKLHMYYST 205 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a 205 (603)
+++.++|.++|-+|.+.+ +.+..+..+|.+.|.+.|..++|+.+.+.+...+.. ...+.-.|..-|...|-+++|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578999999999999754 455677888999999999999999999999876542 234555666777777888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFS-THMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 206 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
.++|..+.+.|.- -......|+..|-...+|++|+++-+++...+....... ...|-.|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888777764321 334566777777777777777777776666554432211 12233334444444455555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 285 MKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 285 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
..+...+ ....-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4443211 11122223333444444444444444444443333333444444444444444444444444433
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.7e-10 Score=105.75 Aligned_cols=287 Identities=10% Similarity=0.031 Sum_probs=208.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 351 (603)
.|+|..|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+..++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577788888777766655333 3345555556667788888888888887764455666777777788888888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHH
Q 007461 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV-------TYASIINAYCRIALYSKAEKVFIE 424 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~ 424 (603)
++++.+.++. +..+......+|.+.|++.+...++..|.+.|.-.+.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888877764 45577788888888888888888888888877654433 567777777666666666667766
Q ss_pred HHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007461 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504 (603)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 504 (603)
..+. .+.++..-.+++.-+.++|+.++|.++.++..+++..|+.. ..-.+.+-++...-++..++-.+. .+-+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 6554 34556666777888888899999988888888876666522 233455667777777777665543 22244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
..+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+..+|.+.|+.++|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6678888888888888888888887766 4678888888888888888888888888776643
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.9e-09 Score=100.47 Aligned_cols=362 Identities=12% Similarity=0.039 Sum_probs=260.3
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 007461 215 AGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP 294 (603)
Q Consensus 215 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 294 (603)
.+...|...+-.....+.+.|....|+..|.......+-.+ .+|-.|.... .+.+ ....+.. |...|.
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W----~AWleL~~li---t~~e----~~~~l~~-~l~~~~ 225 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFW----SAWLELSELI---TDIE----ILSILVV-GLPSDM 225 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcch----HHHHHHHHhh---chHH----HHHHHHh-cCcccc
Confidence 34455666666666677788999999999988876654432 2444444333 2222 2222221 222222
Q ss_pred HHH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHhhHHHH
Q 007461 295 SIY--ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK--ISDCISCAI 370 (603)
Q Consensus 295 ~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l 370 (603)
..+ --+..++-...+.+++.+-.......|++.+...-+....+.....++++|+.+|+++...++- -|..+|+.+
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 211 2234556666688888888888888888878877777788888899999999999999988652 244556555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCH
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 450 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (603)
+-.- +.+ ..+.++.+-...--+--+.|..++.+.|+-.++.++|...|++..+.+ +.....|+.+.+-|....+.
T Consensus 306 LYv~--~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 306 LYVK--NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHH--hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhccc
Confidence 4332 221 112222221111112334677888899999999999999999999986 56678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 451 RDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 451 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
..|.+-++...+- .+-|-..|-.|.++|...+.+.-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++-|...
T Consensus 381 ~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 381 HAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999986 35589999999999999999999999999998653 336788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHHHHHH--HHHHHHhcCcHHHHHHH
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS----EGTKLDERLYHS--AMNALRDAGLQMQAQWL 596 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~--ll~a~~~~g~~~~a~~~ 596 (603)
...|-. +...+..|.+.|-+.++.++|...+++-++ .|...+...... |..-+.+.+++++|...
T Consensus 459 i~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 459 ILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred Hhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 887543 668899999999999999999999887665 354444222222 22345677777777653
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=4e-08 Score=95.47 Aligned_cols=500 Identities=13% Similarity=0.092 Sum_probs=303.8
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN------VLPDAHTCS 156 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~ 156 (603)
|...|.-+...+-. +-++.+|++-++. ++..-+--|..+++.+++++|.+.+....... .+.+-..|.
T Consensus 141 W~lyl~Fv~~~~lP-ets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 141 WDLYLKFVESHGLP-ETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred hHHHHHHHHhCCCh-HHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 44444444434333 3367777666543 33446666777778888888888777765321 134455666
Q ss_pred HHHHHHHccCChHH---HHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 157 RLVASCVRARKFKI---ANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 157 ~ll~~~~~~~~~~~---a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
.+-+..++..+.-. ...+++.....-. .-...|++|.+-|.+.|.+++|..+|++..+. ...+.-|..+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 66666655543322 2223333222211 12357889999999999999999999887764 223344555555555
Q ss_pred HcC----------------------CHHHHHHHHHHHHhCCCC--------CCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 007461 233 KIG----------------------DSEKVAALFLECKSRKLD--------STPFSTHMYKILCDSLGKSGRAFEALKFF 282 (603)
Q Consensus 233 ~~g----------------------~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 282 (603)
.-. +++-...-|+.+..+.+. .++.++..|..-+. +..|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 321 233334445544433321 12234445544443 3356777888888
Q ss_pred HHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 007461 283 RDMKEKGILED------PSIYASLICSFASITEVKLAEELFKEAEEKGMLRD---PEVCLKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 283 ~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~ 353 (603)
.+.... +.|. ...|..+.+.|-+.|+++.|+.+|++..+-..+.- ..+|.....+-.+..+++.|+++.+
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 887654 3332 34577888888999999999999999988654322 4577777788888888999998887
Q ss_pred HHHhCCCC-----------------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 354 SMKNAKLK-----------------ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 354 ~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
......-. -+..+|...+..--..|-++....+|+++.+..+.......| ....+-...-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHH
Confidence 75432111 122345555555556777888888888888766533222222 222234555678
Q ss_pred HHHHHHHHHHHcCCCcC-HhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHhHHHHH--HHHHHhcCCHHHHHH
Q 007461 417 KAEKVFIEMQQKGFDKC-VVAYSSMVAMYGK---TGRIRDAMWLVAKMKAKGCEPNVWIYNSL--MDMHGRAKNLRQVEK 490 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~a~~ 490 (603)
++.+++++-+..--.|+ ...|+..+.-+.+ .-.++.|..+|++.++ |++|...-+--| ...--+.|....|+.
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888877555422333 3456666555544 3468899999999998 566643322222 222234688888999
Q ss_pred HHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHHH
Q 007461 491 LWKEMERRKVTPDK--VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAG---IMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 491 ~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m 565 (603)
++++... ++++.. ..||..|.--...=-+.....+|++.++. -||...-. -+.+.=.+.|.+++|..++..-
T Consensus 608 iyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 608 IYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 9999765 455544 35788776555444456667788888775 44554332 2334456788899998888766
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHh
Q 007461 566 KSE-GTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 566 ~~~-g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~ 598 (603)
-+- ....+...|.+.-.-=.++|+.+..+++++
T Consensus 685 sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 685 SQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred hhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 543 233455667777666778888776666553
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=2.2e-10 Score=104.94 Aligned_cols=284 Identities=12% Similarity=0.069 Sum_probs=233.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 385 (603)
..|++.+|+++..+..+.+-.| ...|..-..+--..|+.+.+-.++.+..+....++....-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4699999999999988876432 334445566777889999999999999988555677778888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-------HhhHHHHHHHHHccCCHHHHHHHHH
Q 007461 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC-------VVAYSSMVAMYGKTGRIRDAMWLVA 458 (603)
Q Consensus 386 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 458 (603)
-+.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+ ..+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999876 34567788899999999999999999999999886544 3467777777777777777677787
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007461 459 KMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVID 538 (603)
Q Consensus 459 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 538 (603)
....+ .+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ -...-.+.+-++.+.-++..++..+.... +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 77655 456777778889999999999999999999998877766 22233566778888888888877765433 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
+..+..|...|.+.+.|.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.++.++
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 68889999999999999999999998885 479999999999999999999999998875
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=8.9e-12 Score=121.15 Aligned_cols=282 Identities=14% Similarity=0.141 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 007461 274 RAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG--MLRDPEVCLKLVLMYIEEGLVE-KTLD 350 (603)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~-~a~~ 350 (603)
+..+|+..|..+... +.-.......+..+|...+++++++++|+.+.+.. ..-+..+|.+.+..+-+.-.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 455666666664333 22223344555566666666666666666665543 1224455555444332211111 1111
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
+. +.+. ....+|.++.+.|.-+++.+.|++.|++..... | ...+|+.+..-+.....+|.|...|+......
T Consensus 413 Li----~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 413 LI----DTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HH----hhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 11 1111 233456666666666666666666666555432 3 44555555555555555666666655554332
Q ss_pred CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTT 509 (603)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 509 (603)
+.+-..|--+.-.|.|.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.++|+.++++......+ |...---
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 1122233334445556666666666665555431 123344444445555556666666666665543222 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 510 VISAYNRAREFDMCVKFYNEFRMNGGVID-RAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
-+..+...+++++|+..++++++. .|+ ...+-.++..|.+.|+.+.|+.-|--+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 233344455566666666665553 233 234555555666666666666555555543
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.8e-11 Score=119.03 Aligned_cols=198 Identities=10% Similarity=0.033 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHH
Q 007461 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV---TYAS 404 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ 404 (603)
.+.+|.++..+|.-+++.+.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+.... .|.. .|-.
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHh
Confidence 4455555555555555555555555555554432 334455555555555555555555555442 2222 2223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 484 (603)
+...|.+.++++.|+-.|+...+.+ +.+.+....+...+.+.|+.++|+.++++..... +-|+..--.....+...++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcc
Confidence 3444555555555555555555543 3344444445555555555555555555554431 1122222223344444555
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 485 LRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
.++|+..++++++. .|+. ..|..+...|.+.|+.+.|+.-|.-+.+.+
T Consensus 573 ~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 573 YVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55555555555532 3333 335555555555555555555555554443
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=1.4e-08 Score=98.90 Aligned_cols=454 Identities=12% Similarity=0.068 Sum_probs=290.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHH
Q 007461 128 VQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTIL 207 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 207 (603)
...+++...+.+.+.+.+. .+-...|.....-.+...|+.++|....+.-...++.+.+.|..+.-.+....++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 3456677777777776663 233444544444445567888888888888887777888888888888888888899999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 208 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+|......+.. |...+.-+.-.-++.|+++.....-....+..+.. ...|..++.++.-.|++..|..++++..+
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~----ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ----RASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888876533 56666666666667777777776666665544332 35688888888889999999999888876
Q ss_pred CC-CCCCHHHHHHHHH------HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 288 KG-ILEDPSIYASLIC------SFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 288 ~g-~~p~~~~~~~ll~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
.. -.|+...|..... .....|..+.|.+.+..-... +.-....-..-...+.+.+++++|..++..+..+++
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 53 2455555543322 234567777777766554332 111222333556778899999999999999998874
Q ss_pred CCCHhhHHHH-HHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhH
Q 007461 361 KISDCISCAI-VNGFSKRRGYWAAV-KVYEQLISQGCIPGQVTYAS-IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAY 437 (603)
Q Consensus 361 ~~~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 437 (603)
|...|+.. ..++.+-.+.-+++ .+|....+.- |-...... =++......-.+....++..+.+.|+++ ++
T Consensus 251 --dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 251 --DNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred --hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 55555544 44443444444555 6666655431 11111111 1111222233445556677777888654 44
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH----cC----------CCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007461 438 SSMVAMYGKTGRIRDAMWLVAKMKA----KG----------CEPNVWIY--NSLMDMHGRAKNLRQVEKLWKEMERRKVT 501 (603)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~m~~----~~----------~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 501 (603)
..+...|-.....+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|+..++..++ ..
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HT 401 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HT 401 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cC
Confidence 4455444332222211111111111 11 14555444 4567788899999999999999994 46
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-----
Q 007461 502 PDKV-SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDER----- 575 (603)
Q Consensus 502 p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----- 575 (603)
|+.+ .|..=.+.+.+.|++++|..++++..+.+. +|..+-.-...-..++.+.++|.++.....+.|. +..
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~ 478 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAE 478 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHH
Confidence 7654 455666888999999999999999988653 4666655777888899999999999999988874 222
Q ss_pred ---HHHHH--HHHHHhcCcHHHHHHHHhhc
Q 007461 576 ---LYHSA--MNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 576 ---~~~~l--l~a~~~~g~~~~a~~~~~~~ 600 (603)
.|-.+ ..+|.+.|++.+|++=+..+
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 23322 24577778887776655443
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=7.4e-11 Score=117.97 Aligned_cols=434 Identities=13% Similarity=0.074 Sum_probs=265.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|..... .+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556777899999999999999999999999888 9998887765 57888999999999998888776
Q ss_pred CCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHh----CCCCCCC-----------ccHHHHHHHHHHHhccCCHHHH
Q 007461 217 IVLDSGCYCQIMEAYYKIGDSEK---VAALFLECKS----RKLDSTP-----------FSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 217 ~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A 278 (603)
.|-+.||..|..+|...||+.. +++.+..+.. .+..... .....-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5777899999999999999765 3332222221 1111100 0000112233334445555555
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 279 LKFFRDMKEKG-ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 279 ~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
++++..+.... ..|- ..+++-+.... .-.++++.......-.+++.++..+++.-...|+++.|..++.+|++
T Consensus 159 lkll~~~Pvsa~~~p~----~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPF----QVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchH----HHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55555443221 1111 11244443322 22333333333222258999999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH-------------------
Q 007461 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKA------------------- 418 (603)
Q Consensus 358 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a------------------- 418 (603)
.|.+.+..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 9998888777777766 888889999999999999999999998777666654432211
Q ss_pred -----HHHHHHH---------HH---cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCC-CHhHHHHHHHH
Q 007461 419 -----EKVFIEM---------QQ---KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK--GCEP-NVWIYNSLMDM 478 (603)
Q Consensus 419 -----~~~~~~~---------~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p-~~~~~~~li~~ 478 (603)
.+.++.- .+ .|+......|...++. ...|+-++..++...+..- ...+ ++..|..++.-
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 1111110 00 1222233344433332 2356666677666666431 1112 33445444443
Q ss_pred HHhcCCH----------------------HHHHHHHHHHHhCCCCCCH----------------------------HHHH
Q 007461 479 HGRAKNL----------------------RQVEKLWKEMERRKVTPDK----------------------------VSYT 508 (603)
Q Consensus 479 ~~~~g~~----------------------~~a~~~~~~m~~~~~~p~~----------------------------~~~~ 508 (603)
|.+.-+. .+..++... ..||. ..-+
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 3322111 111111111 11221 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 007461 509 TVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE--GTKLDERLYHSAMNALRD 586 (603)
Q Consensus 509 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~a~~~ 586 (603)
.++..|+..-+..+++..-++.... .- ...|..||+-+....+.+.|..+.++.... .+..|...+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~-lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL-LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 3444444444444444333333221 11 145778888888888888888888877643 345667778888888888
Q ss_pred cCcHHHHHHHHhhcc
Q 007461 587 AGLQMQAQWLQQNFE 601 (603)
Q Consensus 587 ~g~~~~a~~~~~~~~ 601 (603)
.+....+..+++++.
T Consensus 541 ~~~l~dl~tiL~e~k 555 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDK 555 (1088)
T ss_pred hHHHHHHHHHHhhhh
Confidence 888888888887764
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.1e-09 Score=102.85 Aligned_cols=285 Identities=9% Similarity=0.041 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007461 293 DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVN 372 (603)
Q Consensus 293 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 372 (603)
+......-..-|-..+++.+..++.+.+.+.. +++...+..-|..+...|+..+-..+=.++.+..+. ...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 33444444444555667777777777776654 344555555555666777766666555566555442 4446777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHH
Q 007461 373 GFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD 452 (603)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 452 (603)
-|.-.|+..+|.+.|.+...-.. .=...|......++-.|..|+|...+...-+.- +-...-+--+.--|.+.+..+-
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 77777777777777776553221 112356666677777777777777776665531 1111111222334666777777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 007461 453 AMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR--KVT----PDKVSYTTVISAYNRAREFDMCVKF 526 (603)
Q Consensus 453 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~a~~~ 526 (603)
|.++|.+.... .+.|+...+-+.-.....+.+.+|...|+..+.. .+. --..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 77777776654 2446666666666666677777777777766421 011 1223577777788888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 527 YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALR 585 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~ 585 (603)
+++.+....+ +..++.++.-.|...|+++.|++.|.+.+ .+.||..+...++..+.
T Consensus 478 ~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 8877766443 67777777777778888888888887776 56777777776666443
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.8e-09 Score=97.11 Aligned_cols=459 Identities=10% Similarity=0.064 Sum_probs=232.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 007461 87 LHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR 166 (603)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 166 (603)
+.-+..++++.. |+.+++...... -.-...+--.+...+.+.|++++|+..+..+.... .++...+..|.-.+.-.|
T Consensus 29 Ledfls~rDytG-AislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTG-AISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchh-HHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 555555555554 666665544321 11111222334445556666666666666655433 344444444444444445
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 246 (603)
.+.+|..+-.... .++..-..++..-.+.++-.+-....+.+.+. ..--.+|.......-.+.+|++++++
T Consensus 106 ~Y~eA~~~~~ka~----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHhhCC----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6666655544322 22333333344444555555555444444331 11222333333334456666666666
Q ss_pred HHhCCCCCCCccHHHHHH-HHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 247 CKSRKLDSTPFSTHMYKI-LCDSLGKSGRAFEALKFFRDMKEKGILEDP-SIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
+...+..-- ..|. +.-+|.+..-++-+.++++--++. -||. ...+.......+.=+-..|.+-.+.+.+.+
T Consensus 177 vL~dn~ey~-----alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 177 VLQDNPEYI-----ALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred HHhcChhhh-----hhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 655443321 1221 334455566666666666555543 3332 222222222222222223333333333322
Q ss_pred CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007461 325 MLRDPEVCLKLVLMYIEE-----GLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ 399 (603)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 399 (603)
-.. -..+.-.++. ..-+.|++++-.+.+.-+ . .--.++--|.+.+++.+|..+.+++.- .++
T Consensus 250 ~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--E--ARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP 316 (557)
T KOG3785|consen 250 DQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--E--ARLNLIIYYLNQNDVQEAISLCKDLDP----TTP 316 (557)
T ss_pred ccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--H--hhhhheeeecccccHHHHHHHHhhcCC----CCh
Confidence 111 1122222222 223455555544443221 1 233455667788888888887776541 222
Q ss_pred HHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhH
Q 007461 400 VTYASIINAYCRIA-------LYSKAEKVFIEMQQKGFDKC-VVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471 (603)
Q Consensus 400 ~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 471 (603)
.-|..-.-.....| ...-|.+.|...-+.+..-| +.--.++...+.-..++++.+-.++.+..-=...|...
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 22221111122222 23445555655544443322 23344556666666778888888888776534445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 007461 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY-TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRA-IAGIMVGVF 549 (603)
Q Consensus 472 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 549 (603)
+| +..+++..|++.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|++++-++ +...+.. ....+...|
T Consensus 397 ~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~C 471 (557)
T KOG3785|consen 397 LN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDC 471 (557)
T ss_pred hH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHH
Confidence 54 677888888888888888887654444 44555 44556777888888887775443 2222333 334555677
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 550 SKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 550 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
.+++.+=-|.+.|+.+... .|+...|..--.||
T Consensus 472 Yk~~eFyyaaKAFd~lE~l--DP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 472 YKANEFYYAAKAFDELEIL--DPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHHHHHHhhhHHHcc--CCCccccCCccchH
Confidence 7888887788888777643 57777776555454
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=3e-08 Score=96.58 Aligned_cols=423 Identities=13% Similarity=0.097 Sum_probs=260.4
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 171 (603)
.-|+..+ |.+..+...+. -.-+...|..+.-.+....++++|+..|......+ +.|...+.-+--.-++.|+++..
T Consensus 53 ~lg~~~e-a~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 53 CLGKKEE-AYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred cccchHH-HHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 3455555 77777766653 24466678777777777788888888888887765 55666777666666777888877
Q ss_pred HHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC-CCCChhhHHHHH------HHHHHcCCHHHHHHHH
Q 007461 172 NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG-IVLDSGCYCQIM------EAYYKIGDSEKVAALF 244 (603)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll------~~~~~~g~~~~a~~~~ 244 (603)
...-..+.+..+.....|.....++.-.|++..|..+++...+.. -.|+...+.... ....+.|.++.|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 777777777777778888888888888888888888888887754 245665554433 2344567777777766
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHH
Q 007461 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA-S-ITEVKLAEELFKEAEE 322 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~-~g~~~~a~~~~~~~~~ 322 (603)
......-... ...-..-...+.+.+++++|..+|..++.. .||..-|...+..+. . .+..+....++....+
T Consensus 209 ~~~e~~i~Dk----la~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 209 LDNEKQIVDK----LAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhhhHHHHH----HHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5543322111 112234456778888999999999988876 566666655544443 2 3333333355655544
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC---
Q 007461 323 KGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLI----SQGC--- 395 (603)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~--- 395 (603)
.-......... =+.......-.+...+++..+.+.|+++ ++..+...|-.....+-..++.-.+. ..|.
T Consensus 283 ~y~r~e~p~Rl-plsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 283 KYPRHECPRRL-PLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred cCcccccchhc-cHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 31110000000 0011111112233344555666777643 35555544433222221111111111 1110
Q ss_pred -------CCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 007461 396 -------IPGQV--TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE 466 (603)
Q Consensus 396 -------~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 466 (603)
+|... ++-.++..+-+.|+++.|...++.....- +.-+..|..=.+.+...|++++|..++++..+.. .
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 34443 34456777888999999999999887762 2234566666788888999999999999988763 4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 007461 467 PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS--------YTTV--ISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~l--i~~~~~~g~~~~a~~~~~~~~~ 532 (603)
||..+-.-...-..+.++.++|.++.....+.|. +... |-.+ ..+|.+.|++..|++-|..+-+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 5665555666677788899999998888877664 2221 2111 2456777777777776665543
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=2.5e-07 Score=90.16 Aligned_cols=501 Identities=10% Similarity=0.071 Sum_probs=320.2
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHh---cC-CHHHHHHHHHHHHhCCCC---CCHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQ---SK-KWDSIVSLSEDFKIYNVL---PDAHTC 155 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~-~~~~a~~~~~~~~~~~~~---~~~~~~ 155 (603)
|-..|..-.. ...+.-..+|+++.+. ++-+-..|..-+..-.. .. -.+.+...++..-+..+. .-+..|
T Consensus 30 W~RYIe~k~~--sp~k~~~~lYERal~~--lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIw 105 (835)
T KOG2047|consen 30 WLRYIEHKAG--SPDKQRNLLYERALKE--LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIW 105 (835)
T ss_pred HHHHHHHHcc--CChHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHH
Confidence 5455554433 4444577888888764 46677777776643221 11 112333333333222221 345677
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCc--chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDGEI--ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
..-+..+.+.|++...+..|+..+..-|. ...+|...+......+-++-++.++++-++. ++..-.--+..+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 77778888899999999999998876663 5678999999999999999999999999875 33357778888999
Q ss_pred cCCHHHHHHHHHHHHhCCCC---CCCccHHHHHHHHHHHhccCCHHHHH---HHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 007461 234 IGDSEKVAALFLECKSRKLD---STPFSTHMYKILCDSLGKSGRAFEAL---KFFRDMKEKGILEDP--SIYASLICSFA 305 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~--~~~~~ll~~~~ 305 (603)
.+++++|.+.+..+...+.. ..+.+-..|..+.+...++-+.-..+ .+++.+... -+|. ..|.+|..-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 99999999999887643211 11223456888877777765543333 334444332 4554 46889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhCCCC--
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG----------------------LVEKTLDVVESMKNAKLK-- 361 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~a~~~~~~~~~~~~~-- 361 (603)
+.|.++.|..++++....- ....-++.+.+.|+.-. +++-...-|+.+.+..+.
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999988753 23333444444443211 122233334444333221
Q ss_pred ---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007461 362 ---------ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG------QVTYASIINAYCRIALYSKAEKVFIEMQ 426 (603)
Q Consensus 362 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 426 (603)
-+...|..-+. +..|+..+-+..|.+..+. +.|- ...|..+...|-..|+++.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 11222222221 2345666777777777653 1221 2356778888999999999999999988
Q ss_pred HcCCCcC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHc----------CCCC-------CHhHHHHHHHHHHhcCCHH
Q 007461 427 QKGFDKC---VVAYSSMVAMYGKTGRIRDAMWLVAKMKAK----------GCEP-------NVWIYNSLMDMHGRAKNLR 486 (603)
Q Consensus 427 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p-------~~~~~~~li~~~~~~g~~~ 486 (603)
+..++.- ..+|..-..+=.+..+++.|+++.+..... |..| +...|...++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7653322 445666666667788899999988876532 1111 3456777777777889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc---cCCHHHHHHHH
Q 007461 487 QVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDR-AIAGIMVGVFSK---LSQIEELVKLL 562 (603)
Q Consensus 487 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~ 562 (603)
....+++++++..+.......| ....+-.+.-++++.+++++-+..-.-|+. .+|+..+.-+.+ .-+.+.|..+|
T Consensus 495 stk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999998876542222211 122233455688888888876655334554 467776665543 23689999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH--HHhcCcHHHHHHHHhhc
Q 007461 563 QDMKSEGTKLDERLYHSAMNA--LRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 563 ~~m~~~g~~~~~~~~~~ll~a--~~~~g~~~~a~~~~~~~ 600 (603)
++.++ |++|...-+--|+-| =-+.|.-..|+.++++.
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998 777765433333322 24679999999998864
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=6.3e-10 Score=115.17 Aligned_cols=251 Identities=10% Similarity=-0.019 Sum_probs=154.3
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHHHhhhh---------hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSAMGGYN---------KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
++++|...|++..+.+|.+..+|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 4567777777777777766666666655443 223467777777777776433 566677777777777888
Q ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 238 EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELF 317 (603)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 317 (603)
++|...|++..+.++.. ...|..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 88888887777665432 346777777777888888888888877765322 2222333344455567778888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC
Q 007461 318 KEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQG-CI 396 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~ 396 (603)
+++.+...+.++..+..+...|...|+.++|...+.++....+. +....+.+...|...| ++|...++.+.+.. ..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 77766543334555666777777788888888887776554332 3333455555556666 46666666655421 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 397 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
+..... .-..+.-.|+.+.+..+ +++.+.+
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222222 22334445666666555 6666543
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=6e-08 Score=97.06 Aligned_cols=293 Identities=12% Similarity=0.079 Sum_probs=193.5
Q ss_pred HHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---
Q 007461 89 GMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRA--- 165 (603)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 165 (603)
.+...|+..+ |++.++.-... +......+......+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 13 il~e~g~~~~-AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEE-ALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHH-HHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 3445566655 99998775542 33345567778899999999999999999999887 33444445555554222
Q ss_pred --CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 166 --RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY-YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 166 --~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
.+.+....+++.+....|.....-..-+.... ...+ ..+...+..+...|+++ +|+.|-..|......+-..+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 35677788888887766532222222222222 2233 34556677788888764 77777777776655666666
Q ss_pred HHHHHHhC----CC-------CCCCccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 007461 243 LFLECKSR----KL-------DSTPFST--HMYKILCDSLGKSGRAFEALKFFRDMKEKGILED-PSIYASLICSFASIT 308 (603)
Q Consensus 243 ~~~~~~~~----~~-------~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 308 (603)
++...... +. ...+++. .++..+...|-..|++++|++.+++.++. .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 66655432 11 1122333 45566778888899999999999988876 554 567777788888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh------H--HHHHHHHHhcCCH
Q 007461 309 EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI------S--CAIVNGFSKRRGY 380 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~~~~ 380 (603)
++.+|.+.++....... -|..+-+..+..+.++|++++|.+++......+..|-... | .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999988888764 3777777888888899999999888888776654322211 1 2334566677777
Q ss_pred HHHHHHHHHHHH
Q 007461 381 WAAVKVYEQLIS 392 (603)
Q Consensus 381 ~~a~~~~~~m~~ 392 (603)
..|++.|....+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 776666655543
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.1e-08 Score=92.17 Aligned_cols=463 Identities=12% Similarity=0.039 Sum_probs=270.9
Q ss_pred hhHHHHHHh-cCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 83 FDSFLHGML-KDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 83 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
.+..|..+. ..|++.+ |+..|..+.+.. .|+...+-.|.-...-.|.+.+|.++-++. +.++-.-..|...
T Consensus 59 ~~lWia~C~fhLgdY~~-Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEE-ALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHHHhhccHHH-HHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHH
Confidence 444455544 4566655 888888887753 567777777777777788898988877654 2334444445555
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHHcCCHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQ-IMEAYYKIGDSEKV 240 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a 240 (603)
-.+.++-++-....+.+... .+--.+|....-..-.+++|++++.++...+ |+-...+. +.-.|.+..-++-+
T Consensus 131 ahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhH
Confidence 56667766665555544331 1223344444444457889999999888753 34444443 34456777778888
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHH
Q 007461 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLIC-SFASITEVKLAEELFKE 319 (603)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~ 319 (603)
.++++-....-+.+ ..+-|..+....+.=.-..|.+-.+++.+.+-..-. ...-+++ -+.--.+-+.|.+++-.
T Consensus 205 qevl~vYL~q~pdS----tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNLVvFrngEgALqVLP~ 279 (557)
T KOG3785|consen 205 QEVLKVYLRQFPDS----TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNLVVFRNGEGALQVLPS 279 (557)
T ss_pred HHHHHHHHHhCCCc----HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCeEEEeCCccHHHhchH
Confidence 88887776655443 345565555554433333444444455443221100 0111111 11122345677777766
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HhcCC-------HHHHHHHHHHH
Q 007461 320 AEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGF--SKRRG-------YWAAVKVYEQL 390 (603)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~-------~~~a~~~~~~m 390 (603)
+.+. -+..-..|+-.|.+.+++.+|..+.+++... .| +..++++. +..|+ ..-|.+.|+..
T Consensus 280 L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP----~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 280 LMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TP----YEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred HHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--Ch----HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 6553 2233445667788999999998877655422 12 33344332 22232 34455555555
Q ss_pred HHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 007461 391 ISQGCIPGQV-TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469 (603)
Q Consensus 391 ~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 469 (603)
-..+..-|.. --..+...+.-..++++.+-.++.+...-...| ..--.+.++++..|.+.+|+++|-.+....++.+.
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD-~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD-DFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 4444433332 223455555666778888888888877643333 33445778888899999999999877654444333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007461 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY-TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGV 548 (603)
Q Consensus 470 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
.-...|.++|.+++.++.|..++-.+ .-+.+..++ ..+..-|.+++.+=-|-+.|+.+... .|++..|.
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe----- 498 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE----- 498 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC-----
Confidence 33455667888889888887666554 333344443 34446688888888888888887764 45666553
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCc
Q 007461 549 FSKLSQIEELVKLLQDMKSEGTKL-DERLYHSAMNALRDAGL 589 (603)
Q Consensus 549 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~a~~~~g~ 589 (603)
|+-.....+|..+....-.| -......++..++..++
T Consensus 499 ----GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 499 ----GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred ----CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 44444556666665432222 24456666666665544
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=8.6e-10 Score=114.18 Aligned_cols=267 Identities=9% Similarity=-0.011 Sum_probs=192.1
Q ss_pred CCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQ-----SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV---------RARKFKIANTLLQVFIT 180 (603)
Q Consensus 115 p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 180 (603)
.+...|...+++... .+.+++|+.+|++..+.. +.+...|..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 345555555554321 245789999999998875 445566666655443 23458899999999999
Q ss_pred cCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHH
Q 007461 181 DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTH 260 (603)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (603)
.+|.+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.++... .
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----~ 407 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----A 407 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh----h
Confidence 99999999999999999999999999999999987533 566788899999999999999999999988876532 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMY 339 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (603)
.+..++..+...|++++|+..+++..... .| +...+..+..++...|+.++|.+.+..+.... +.+....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 34445556777899999999999987653 34 44456777778889999999999998876542 22444556666677
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007461 340 IEEGLVEKTLDVVESMKNAKL-KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQG 394 (603)
Q Consensus 340 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (603)
+..| ++|...++.+.+..- .+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 8777 477777776654311 1111122 44445556676666666 8887664
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=6e-10 Score=102.59 Aligned_cols=199 Identities=9% Similarity=-0.044 Sum_probs=122.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556666777777777777777777776554 344566666677777777777777777777766666666666777777
Q ss_pred hhcCcHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIV-LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
...|++++|.+.+++..+.... .....+..+...+...|++++|...+++.....+. +...+..+...+...|++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ----RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----ChHHHHHHHHHHHHcCCH
Confidence 7777777777777776653211 12334555566666666666666666666554332 123555666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 276 FEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
++|.+.+++.... ...+...+..+...+...|+.+.|..+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666554 12233444444455555555555555554443
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.2e-09 Score=100.60 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+...|++++|...+++.....+.+..++..+...+...|++++|.+.+++..+.+.. +...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 4455556666666666777766666666655555666666666666666666666666666554322 344555555666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 007461 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVK 311 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 311 (603)
...|++++|.+.|++.......+. ....+..+...+...|++++|.+.+++..... +.+...+..+...+...|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQ--PARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 666666666666666554321111 12334445555555556666655555555432 112334444444445555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007461 312 LAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVES 354 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 354 (603)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555554443 122333333444444444444444444443
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.6e-08 Score=94.60 Aligned_cols=469 Identities=12% Similarity=0.040 Sum_probs=310.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.+..-+..+++-+....++..|+-+-++....+ .|+...-.+..++.-.|++++|..++..- .....+..+......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAK 90 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 456678888888888899999999999887665 44444444677777788898888777665 223467888888888
Q ss_pred hhhhcCcHHHHHHHHHHHHh--CCC-----------CCChhh-----------HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 195 GYNKLHMYYSTILVYEKMKS--AGI-----------VLDSGC-----------YCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~--~~~-----------~p~~~~-----------~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
.+.+..++++|..++..-.. ..+ .+|..- +-.-...|....+.++|+..|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 99999999999988873210 000 111100 000112344445566666666665554
Q ss_pred CCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 007461 251 KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-GILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDP 329 (603)
Q Consensus 251 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 329 (603)
+.... ..+..|+....-.. ++-..+|+.+.-. -.+.+......+.........-+.....-.+..-.+..-+.
T Consensus 171 D~~c~----Ea~~~lvs~~mlt~--~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 DAKCF----EAFEKLVSAHMLTA--QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred chhhH----HHHHHHHHHHhcch--hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 44321 12222332221111 1112222211000 00112222222222110000000000000000111234466
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007461 330 EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 409 (603)
.+.....+-+...+++.+..++++.+.+.++ +....+..-|..+...|+..+-..+=.+|.+.- +-...+|-++.-.|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 6777777888899999999999999998877 556667777889999999998888888888764 44567898998888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 007461 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVE 489 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 489 (603)
...|+..+|.+.|.+....+ +.-...|-.....|+-.|..++|+..+...-+. ++-...-+--+.--|.+.++.+.|.
T Consensus 323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 88999999999999987654 233567889999999999999999998877653 1111111223445688899999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 490 KLWKEMERRKVTP-DKVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGV--IDRAIAGIMVGVFSKLSQIEELVKLL 562 (603)
Q Consensus 490 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 562 (603)
+.|.+.. ++-| |+..++-+.-.....+.+.+|..+|+..+.. +.+ .-..+++.|..+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999998 4445 5566777777777789999999999987632 111 13456889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 563 QDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 563 ~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
++.+.. .+-|..++.++.-.+...|+.+.|...+.+
T Consensus 479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999876 356888999998899999999999988765
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=2.1e-07 Score=93.28 Aligned_cols=294 Identities=11% Similarity=0.055 Sum_probs=201.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC--
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH-- 200 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 200 (603)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+...+|.+..-|..+..+.....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345667889999999999875433 33334555667778889999999999999999998888888888888773333
Q ss_pred ---cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 201 ---MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS-EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 201 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
..+...++++++...- |.......+.-.+..-..+ ..+...+..+..+|+++ +++.|-..|....+.+
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs------lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS------LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch------HHHHHHHHHcChhHHH
Confidence 4677778888876653 3333333332222221222 23455566666777654 6888888887766666
Q ss_pred HHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 277 EALKFFRDMKEK----G----------ILEDPS--IYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYI 340 (603)
Q Consensus 277 ~A~~~~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (603)
-..+++...... + -.|... ++..+...|...|+.++|.+.++..+++. +..+..|..-.+.|-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 666666665432 1 122332 33445566778889999999988888875 224677888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhc
Q 007461 341 EEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT--------YASIINAYCRI 412 (603)
Q Consensus 341 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--------~~~ll~~~~~~ 412 (603)
+.|++++|.+.++.....+. -|..+-+..+..+.+.|+.++|.+++....+.+..|-... ..-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998888888877 4777777778888888888888888888877664332211 13345677788
Q ss_pred CChHHHHHHHHHHHH
Q 007461 413 ALYSKAEKVFIEMQQ 427 (603)
Q Consensus 413 g~~~~a~~~~~~~~~ 427 (603)
|++..|++-|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888777766654
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.4e-07 Score=91.03 Aligned_cols=448 Identities=10% Similarity=0.050 Sum_probs=213.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHH
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYS 204 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (603)
+.+...|++++|.+....+...+ +.+...+..=+-++.+.+++++|+.+.+.-......+... ..-.-+.-+.+..++
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLDE 97 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHHH
Confidence 33445556666666666655444 3444455555555555666666654333211100001100 111112225556666
Q ss_pred HHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 007461 205 TILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFR 283 (603)
Q Consensus 205 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (603)
|+..++ |..+ |..+...-...+.+.|++++|..+|+.+...+..... ...-..++.+ + .+... +
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d--~~~r~nl~a~----~---a~l~~-~ 162 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD--EERRANLLAV----A---AALQV-Q 162 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH--HHHHHHHHHH----H---HhhhH-H
Confidence 666655 2222 2224444455566666666666666666554433211 1111111110 0 00000 1
Q ss_pred HHHHCCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHHcC-------------CCCCH-HHHHHHHHHHHHcCCHH
Q 007461 284 DMKEKGILEDPSIYASLIC---SFASITEVKLAEELFKEAEEKG-------------MLRDP-EVCLKLVLMYIEEGLVE 346 (603)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~-~~~~~l~~~~~~~g~~~ 346 (603)
.+......| ..+|..+.+ .+...|++.+|+++++...+.+ +..+. .+-..|...+-..|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222222 223433333 2335667777777776663211 00011 11223455566778888
Q ss_pred HHHHHHHHHHhCCCCCCHhhH----HHHHHHHHhcCCHH-HHHHHHHHHHHcCC----------CCCHHHH-HHHHHHHH
Q 007461 347 KTLDVVESMKNAKLKISDCIS----CAIVNGFSKRRGYW-AAVKVYEQLISQGC----------IPGQVTY-ASIINAYC 410 (603)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~-~a~~~~~~m~~~g~----------~p~~~~~-~~ll~~~~ 410 (603)
+|..++..+...+. +|.... |.++..-....-++ .++..++....... .-..+.. +.++..+.
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888887777665 233221 22221111111111 12222222111000 0000111 12222222
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 007461 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK--TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQV 488 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 488 (603)
+..+.+.++-..... ..| ...+.+++..+.+ ...+.++.+++...-+..-.-...+.-.++......|+++.|
T Consensus 321 --nk~~q~r~~~a~lp~--~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPG--MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred --hhHHHHHHHHHhCCc--cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 223333333322221 123 2344444444433 224667777777776652111234455566677788999999
Q ss_pred HHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH----HHHHHHHHHHHccCC
Q 007461 489 EKLWK--------EMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG--VIDR----AIAGIMVGVFSKLSQ 554 (603)
Q Consensus 489 ~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~ 554 (603)
.+++. .+.+.+..|- +...+...+.+.++-+.|..++.+.+..-. .+.. .++.-....-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 98888 5555555553 445666667777777777777776654210 1111 234444555567799
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 555 IEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 555 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
-++|..+++++.+. .++|..+...++.+|.... .+.|..+-+.+
T Consensus 474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 99999999999875 3578888888888887754 46666555544
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=7.7e-07 Score=88.85 Aligned_cols=202 Identities=15% Similarity=0.104 Sum_probs=87.9
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
++..|..+.-+....|+++.+.+.|++....-+ -....|..+...|...|.-..|..+++........|+.+ ..+-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~--s~~Lm 398 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI--SVLLM 398 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc--hHHHH
Confidence 445555555555555555555555555443222 133445555555555555555555555443333222111 11211
Q ss_pred HHHHH-hccCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHcCCCCC
Q 007461 265 LCDSL-GKSGRAFEALKFFRDMKEK--GI--LEDPSIYASLICSFASI-----------TEVKLAEELFKEAEEKGMLRD 328 (603)
Q Consensus 265 li~~~-~~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 328 (603)
.-..| .+.+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..+.+. .|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 12222 2234444444444444331 10 01122222222222210 012334455555554432 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQL 390 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (603)
+.+...+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33333334445555555555555555555544445555555555555555555555555543
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=4.7e-10 Score=99.71 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=115.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
.+.+.|.+.|.+.+|.+.|+.-... .+-+.+|..|-+.|.+.++++.|+.++.+-++. .+-|+....-+.+.+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 3445555555555555555544432 234445555555555555555555555554443 12233233344455555555
Q ss_pred HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007461 237 SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEEL 316 (603)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 316 (603)
.++|.++++...+.... ++++...+...|.-.++++-|+..|+++++.|+. +...|+.+.-+|.-.++++.+..-
T Consensus 306 ~~~a~~lYk~vlk~~~~----nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPI----NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHHHHHHHHHHhcCCc----cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 55555555555443322 2234444445555555555555555555555544 444555555555555555555555
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 317 FKEAEEKGMLRD--PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 317 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
|......--.|+ ..+|-.+.......|++..|.+.|+-....+.. +...+|.|.-.-.+.|+.++|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555544322222 334555555555555555555555555554442 334555555555556666666666555544
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.9e-11 Score=80.64 Aligned_cols=48 Identities=33% Similarity=0.618 Sum_probs=21.7
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 467 PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514 (603)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 514 (603)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=1.3e-06 Score=87.30 Aligned_cols=377 Identities=13% Similarity=0.058 Sum_probs=256.3
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 007461 215 AGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP 294 (603)
Q Consensus 215 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 294 (603)
..+.-|...|..+.-+..++|+++.+.+.|++....-... .+.|+.+...|...|.-..|+.++++-....-.|+.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~----~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGE----HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3455688899999999999999999999999887654443 357999999999999999999999887765434544
Q ss_pred HH-HHHHHHHHH-ccCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHh
Q 007461 295 SI-YASLICSFA-SITEVKLAEELFKEAEEK--GM--LRDPEVCLKLVLMYIEE-----------GLVEKTLDVVESMKN 357 (603)
Q Consensus 295 ~~-~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~ 357 (603)
.+ +...-..|. +.+.++++...-.++... +. ...+..+..+.-+|... ....++++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 43 333334444 567777777777776652 11 22344555555555432 123567788888887
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCc----
Q 007461 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK-GFDK---- 432 (603)
Q Consensus 358 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---- 432 (603)
.+.. |..+.-.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |...
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 7764 333444455567888999999999999999866778888888888888899999999998876543 2100
Q ss_pred --------------CHhhHHHHHHHHHc---------c--------------CCHHHHHHHHHHH--------HHcC---
Q 007461 433 --------------CVVAYSSMVAMYGK---------T--------------GRIRDAMWLVAKM--------KAKG--- 464 (603)
Q Consensus 433 --------------~~~~~~~li~~~~~---------~--------------g~~~~A~~~~~~m--------~~~~--- 464 (603)
...|...++...-. . ++..+|.+....+ ...|
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 11122222222110 0 0111111111100 0000
Q ss_pred ------CCC--C------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 465 ------CEP--N------VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 465 ------~~p--~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
+.| + ...|......+.+.++.++|...+.+..... .-....|......+...|.+++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 011 1 1234555667778888888888888876432 223455666667788889999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVK--LLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
...++. +..+..++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.++.
T Consensus 711 l~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 711 LALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 875433 45678899999999998877777 999999865 45788999999999999999999988764
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.1e-11 Score=80.42 Aligned_cols=50 Identities=30% Similarity=0.597 Sum_probs=32.9
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.3e-07 Score=85.61 Aligned_cols=300 Identities=11% Similarity=-0.021 Sum_probs=176.5
Q ss_pred CCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 007461 290 ILEDPSIYASLICSFAS--ITEVKLAEELFKEAEEKG-MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI 366 (603)
Q Consensus 290 ~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 366 (603)
+.|...+....+.+++. .++-..+...+-.+.... ++.|......+.+.+...|+.++|...|++....++- +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 34444444445555443 344444444444443332 4557777888888888888888888888887766542 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
.....-.+.+.|+.+....+...+.... +-....|-.-........+++.|+.+-++.++.+ +.+...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3333344556777777666666655421 1111222222333445566777777777766654 4445555555566667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVI-SAYNR-AREFDMCV 524 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~a~ 524 (603)
.|++++|.-.|+..... -+-+...|..|++.|...|.+.+|.-+-++..+. ++-+..++..+. ..|.- ..--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 77777777777776653 1236677777777777777777777666665432 233444444442 22221 12236666
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHh
Q 007461 525 KFYNEFRMNGGVIDR-AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~ 598 (603)
+++++.... .|+- ...+.+.+.+...|+.++++.++++... ..||....+.|.+.+...+.+.+|+.-+.
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666665553 3332 3455666677777777777777777664 35777777777777777777777766554
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.1e-08 Score=100.94 Aligned_cols=198 Identities=15% Similarity=0.183 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcC-H
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQ-----GC-IP-GQVTYASIINAYCRIALYSKAEKVFIEMQQK-----GF-DKC-V 434 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~ 434 (603)
.+...|...+++++|+.+|+++..- |- .| -..+++.|..+|.+.|++++|...+++..+. +. .|. .
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3455566666666666666665431 21 11 2245667777788888888888777765432 21 122 2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--C
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAK---GCEPN----VWIYNSLMDMHGRAKNLRQVEKLWKEMERRK----V--T 501 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~--~ 501 (603)
..++.+...|...+++++|..+++...+. -..++ ..+++.|...|...|++++|++++++.+... - .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 34567777788889999999888876542 12222 4578899999999999999999999875431 1 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 502 PD-KVSYTTVISAYNRAREFDMCVKFYNEFRM----NGGV-IDR-AIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 502 p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
+. ...++.+...|.+.+++++|.++|.+... .|.. |+. .+|..|...|.+.|++++|+++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 34578888999999999999999887643 3332 343 578899999999999999999988765
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.9e-07 Score=88.99 Aligned_cols=416 Identities=12% Similarity=0.141 Sum_probs=242.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HHc
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY--YKI 234 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~ 234 (603)
+=++.+.+.+++++|.+...+++...+.+..++..-+-++.+.+.|++|+.+.+.=.. ...+..-+ +=.+| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 3456677889999999999999999988999999999999999999999965543211 11111111 23444 478
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH
Q 007461 235 GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLA 313 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a 313 (603)
+..|+|...++.....+ ..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... .+
T Consensus 93 nk~Dealk~~~~~~~~~-------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~ 161 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLD-------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV 161 (652)
T ss_pred ccHHHHHHHHhcccccc-------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH
Confidence 99999999988332221 2356666788999999999999999998765332 222222333222111 11
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hCCCCCCH-------hhHHHHHHHHHh
Q 007461 314 EELFKEAEEKGMLRD--PEVCLKLVLMYIEEGLVEKTLDVVESMK--------NAKLKISD-------CISCAIVNGFSK 376 (603)
Q Consensus 314 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~-------~~~~~li~~~~~ 376 (603)
. + +......|+ -..+-.....++..|++.+|+++++... +.+.. +. .+-.-|...+..
T Consensus 162 ~-~---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-L---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-EEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-H---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-hhhHHHHHHHHHHHHHHHHHH
Confidence 1 1 112222231 2222334456778999999999999872 11111 11 123345566778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCh-H-HHHHHHHHH------------HHcCCCcCHhhHH
Q 007461 377 RRGYWAAVKVYEQLISQGCIPGQVTY----ASIINAYCRIALY-S-KAEKVFIEM------------QQKGFDKCVVAYS 438 (603)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~-~-~a~~~~~~~------------~~~~~~~~~~~~~ 438 (603)
.|+..+|..++...++.. .+|.... |.++ +.....++ + .++..++.. .... .-....-+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~ 313 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNN 313 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999876 3454322 2222 22221111 1 111222211 1110 11111222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR-AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 517 (603)
.++..| .+..+.+.++....... .|....=..+..++.. ......+.+++...-+....-........+......
T Consensus 314 ~lL~l~--tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 314 ALLALF--TNKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHH--hhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 333333 34555555555544432 3443333333333322 224777888888776543222234566677778899
Q ss_pred CCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHH
Q 007461 518 REFDMCVKFYN--------EFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE------GTKLDERLYHSAMNA 583 (603)
Q Consensus 518 g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~ll~a 583 (603)
|+++.|.+++. .+.+.+. .+.+...++..+.+.++.+-|..++.+..+. +-..-..++..+..-
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999999 4444333 3345556777778877766666666554431 111112334444444
Q ss_pred HHhcCcHHHHHHHHhhcc
Q 007461 584 LRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 584 ~~~~g~~~~a~~~~~~~~ 601 (603)
=.++|+.++|..+++++.
T Consensus 468 ~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELV 485 (652)
T ss_pred HHhcCchHHHHHHHHHHH
Confidence 457799999999999874
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.4e-09 Score=95.23 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=197.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
+.+.+.|.+.|.+.+|.+-++...+. .|-+.||..|-+.|.+-.++..|+.++.+-.+.-|.++....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45788899999999999999988776 4778888889999999999999999999988887788888888888999999
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
+.++|.+++....+... .++.....+...|.-.+++|.|...++++.+.|..+. ..|+.+.-+|.-.+++|-++.
T Consensus 305 ~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp----eLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP----ELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred hHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh----HHHhhHHHHHHhhcchhhhHH
Confidence 99999999999888643 3777777888889999999999999999999888753 579999999999999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 281 FFRDMKEKGILED--PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 281 ~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
.|++....--.|+ ...|-.+-......||+..|.+.|+.....+. .+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999887655554 35677787788889999999999998887653 36778888988899999999999999988776
Q ss_pred CCC
Q 007461 359 KLK 361 (603)
Q Consensus 359 ~~~ 361 (603)
.+.
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 543
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.7e-06 Score=77.89 Aligned_cols=266 Identities=12% Similarity=0.029 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 258 STHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSI-YASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336 (603)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
|+.....+.+.+...|+.++|+..|+..... .|+..+ .....-.+.+.|+.+....+...+.... ......|..-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3455666666666666666666666665543 222211 1111112234555555555544444321 01122222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
.......+++.|+.+.++..+.+.. +...+-.-...+...+++++|.-.|+..+... +-+...|..++..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 2333444555555555554444332 22223222334444555555555555544321 123445555555555555555
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHH-HHHHcc-CCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHH
Q 007461 417 KAEKVFIEMQQKGFDKCVVAYSSMV-AMYGKT-GRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWK 493 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 493 (603)
+|...-+...+. ++.+..+.+.+. ..+.-. .--++|.+++++-+.. .|+ ....+.+...+...|..+.++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 555444443332 122333333321 112111 1124455555544432 333 2233444444555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 494 EMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 494 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
+... ..||....+.|.+.+...+.+++|++.|......
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5542 2455555555555555555555555555555443
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=6.6e-08 Score=91.59 Aligned_cols=216 Identities=11% Similarity=-0.085 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhhCCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 007461 98 ELAYDYYNEAKKLPEFRPE--KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLL 175 (603)
Q Consensus 98 ~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 175 (603)
+.++.-+.+++......|+ ...|..+...+.+.|++++|...|+...+.. +.+...|+.+...+...|++++|...|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3477777777754333333 3457788888889999999999999988876 567888999999999999999999999
Q ss_pred HHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007461 176 QVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDST 255 (603)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 255 (603)
+...+..|.+..+|..+...+...|++++|++.|+...+.+ |+..........+...++.++|...|++.......+
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~- 198 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE- 198 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc-
Confidence 99998888888888889988999999999999999888754 332222222223445678888988886654332111
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK---GI--LE-DPSIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
.|.. .......|+..++ +.+..+.+. .+ .| ....|..+...+.+.|+.++|...|+.+.+.+
T Consensus 199 -----~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 199 -----QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -----ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1221 1222234444333 244444321 11 11 12356666666666777777777777666654
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=5.5e-08 Score=82.88 Aligned_cols=199 Identities=9% Similarity=-0.079 Sum_probs=161.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
+.-.|.-.|...|+...|..-+++..+.+ +.+..+|..+...|-+.|+.+.|.+.|++.....+.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 44556778889999999999999998876 55677888888889999999999999999999888888999999999999
Q ss_pred cCcHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 199 LHMYYSTILVYEKMKSAGI-VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
.|++++|.+.|++....-. .--..+|..+.-+..+.|+.+.|.+.|++..+.++...+ +.-.+.....+.|++..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~----~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP----ALLELARLHYKAGDYAP 191 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh----HHHHHHHHHHhcccchH
Confidence 9999999999998877532 123457888888888899999999999988877765433 57778888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
|...++.....+. ++..+.-..|+.-...|+.+.+.+.=..+.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9888888877765 78888888888888888888777766665553
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=4.1e-07 Score=89.69 Aligned_cols=192 Identities=9% Similarity=-0.067 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHhhCCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHccCChH
Q 007461 94 PQTQELAYDYYNEAKKLPEFRPEK-STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR---LVASCVRARKFK 169 (603)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~ 169 (603)
++.++ +.+.+....+...-.++. .........+...|++++|..+++...+.. +.+...+.. ........+...
T Consensus 20 ~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~ 97 (355)
T cd05804 20 GERPA-AAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRD 97 (355)
T ss_pred CCcch-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCch
Confidence 34443 455555544332112222 122223345566788888888888877664 344444442 111112234555
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 170 IANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKS 249 (603)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 249 (603)
.+.+.++......+........+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++...
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 98 HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 5555555422222334455556667778888888888888888776422 456677777888888888888888887765
Q ss_pred CCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 250 RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 250 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
....+.......|..+...+...|++++|+++|++....
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 443222212234556777888888888888888887543
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=5.7e-08 Score=95.98 Aligned_cols=249 Identities=17% Similarity=0.153 Sum_probs=139.5
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC-----C-CCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHhCC----CC
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA-----G-IVLDSGCY-CQIMEAYYKIGDSEKVAALFLECKSRK----LD 253 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~ 253 (603)
-..+...+...|...|++++|..++...++. | ..|.+.+. +.+...|...+++++|..+|+++...- ..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556888899999999999988876653 2 13343333 347778889999999999998876421 12
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 007461 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-----GIL-EDPS-IYASLICSFASITEVKLAEELFKEAEEKGML 326 (603)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 326 (603)
..+.-..+++.|...|.+.|++++|...+++..+. |.. |+.. .++.+...+...+++++|..+++...+.-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~-- 355 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY-- 355 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH--
Confidence 22233567888999999999999999888776532 111 1111 23444445555566666666655443320
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-CH
Q 007461 327 RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ----GC--IP-GQ 399 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~--~p-~~ 399 (603)
.......-..-..+++.|...|...|++++|.+++++.... +. .+ ..
T Consensus 356 --------------------------~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 356 --------------------------LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred --------------------------HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 00000000001123444444444444444444444443321 00 11 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cC--CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQQ----KG--FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
..++.+...|.+.+..++|.++|.+... .| .+....+|..|...|.+.|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3445555666666666666666654332 12 12234566667777777777777776666554
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=8.3e-08 Score=90.92 Aligned_cols=219 Identities=9% Similarity=-0.029 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHH
Q 007461 131 KKWDSIVSLSEDFKIYN-VLPD--AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTIL 207 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 207 (603)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++..+..|.+..+|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 1222 34566777778888999999999998888888888889999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 208 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
.|++..+.... +..++..+..++...|++++|.+.|+.....++... ........+...+++++|.+.|.+...
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99888875432 456777788888888899999988888877654321 011112223456778888888866553
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 288 KGILEDPSIYASLICSFASITEVKLAEELFKEAEEK---GM---LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
.. .|+...+ .+.. ...|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++..+.++
T Consensus 194 ~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 32 2322221 2222 234444333 233333321 11 01234566677777777777777777777776654
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2e-07 Score=79.50 Aligned_cols=195 Identities=16% Similarity=0.030 Sum_probs=96.8
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLG 270 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 270 (603)
.|.-+|...|++..|..-+++.++.+.. +..+|..+...|-+.|+.+.|.+-|+......+.. ..+.|.....+|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~----GdVLNNYG~FLC 114 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN----GDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc----cchhhhhhHHHH
Confidence 3444444445555555555544443322 33344444445555555555555555444433322 123455555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007461 271 KSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 271 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 349 (603)
..|++++|...|++....-..+ -..+|..+.-+..+.|+.+.|...|+..++... ..+...-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 5555555555555554432222 223444444444555555555555555555432 13344445555556666666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
..++.....+. ++..+.-..|..-...|+.+.+-++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666555555 5555555555555556666655555555544
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=3.2e-07 Score=81.02 Aligned_cols=352 Identities=14% Similarity=0.015 Sum_probs=179.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
+.+.+.-+.+..+++.|++++....+.. +.+....+.|.-.|....++..|-..++++....|.-..--..-...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4445555555666666666666555543 224445555555555666666666666666554432211111223334445
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIME--AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
+.+..|+.+...|.+. |+...-..-+. .....+|+..+..+.++....+.. .+.+.......+.|++++
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~A------d~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEA------DGQINLGCLLYKEGQYEA 162 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCcc------chhccchheeeccccHHH
Confidence 5666666666555432 11111111111 122456677777777766543322 234445555667778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHH
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVC----LKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~ 353 (603)
|++-|+...+-|---....|+..+.. .+.|+.+.|.+...+++++|+...+..- +-.++. -..|+. .
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~---- 233 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L---- 233 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H----
Confidence 88877777665433344556655443 3567777777777777777643221110 000000 000000 0
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 354 SMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ-GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
.|...++ ...+|.-...+.+.++++.|.+.+-.|.-. .-..|++|...+.-. ...+++....+-+.-+.+.+ +-
T Consensus 234 ~lh~Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 234 VLHQSAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred HHHHHHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CC
Confidence 0000000 112444444556677777777777776432 123466666554322 23355666666666666654 34
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC-EPNVWIYNSLMDMHG-RAKNLRQVEKLWKEME 496 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 496 (603)
...||..++-.|||..-++-|-.++.+-...-. -.+...|+ |++++. ..-..++|++-+..+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888888888888888888887765322110 11333344 333333 3445666666555543
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.7e-06 Score=85.26 Aligned_cols=71 Identities=14% Similarity=-0.000 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHH-HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHH
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNV-LPDAHTCS-RLVASCVRARKFKIANTLLQVFITDGEIALLAFN 190 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 190 (603)
|..+...+...|+.+.+...+....+... .++..... .....+...|++++|.++++++....|.+..++.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44444555555555555554444433321 11211111 1122234445666666666655555444443333
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.04 E-value=7.2e-06 Score=84.30 Aligned_cols=455 Identities=11% Similarity=-0.005 Sum_probs=223.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc--chhhHHHHHhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI--ALLAFNSAMGGY 196 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~ 196 (603)
.|..|.+.|....+...|.+.|+...+.+ ..+...+....+.|++..+++.|..+.-...+..+. -...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45556666665556666666666665554 445556666666666666666666653333333332 222333344445
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH--HHHHHhccCC
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI--LCDSLGKSGR 274 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~ 274 (603)
...++...|+.-|+...+..+. |...|..+..+|.++|++..|.++|.+...-++.. .|.. ..-..+..|.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGK 645 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhh
Confidence 5666666666666666554433 55566666666666666666666666655544332 2222 2223344566
Q ss_pred HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHH
Q 007461 275 AFEALKFFRDMKEK------GILEDPSIYASLICSFASITEVKLAEELFKEAEE-------KGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 275 ~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 341 (603)
+.+|+..+...... +..--..++..+...+.-.|-...+..+++...+ .....+...|-.+.
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----- 720 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-----
Confidence 66666666555432 1111122222222222222322223333322221 11111111111111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY---W---AAVKVYEQLISQGCIPGQVTYASIINAYCR---- 411 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---- 411 (603)
.|..+|-... .+ .|+.....++..-+-..+.. + -+.+.+-.-.+ ...+..+|..++..|.+
T Consensus 721 -----dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 721 -----DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred -----HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 1122222222 11 12221111111111111111 1 01111111000 01122333333333222
Q ss_pred cC----ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 007461 412 IA----LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQ 487 (603)
Q Consensus 412 ~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (603)
.| +...|...+...++.. ..+..+|+.|.-. ...|.+.-|...|-+-... -+.+..+|..+...+.+..+++.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHH
Confidence 11 2235666666666543 3345566665544 5567777777666555443 24467788888888888999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 488 VEKLWKEMERRKVTPD-KVSYTTVISAYNRAREFDMCVKFYNEF--R--MNGGVIDRAIAGIMVGVFSKLSQIEELVKLL 562 (603)
Q Consensus 488 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 562 (603)
|...|...+.. .|+ ...|......-...|+.-+...+|..- . ..|-.++..-|-.....-..+|+.++-+...
T Consensus 869 A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 869 AEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred hhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 99999988854 443 344555444455667777777777652 2 1223344444444444445667666554444
Q ss_pred HHHHh---------CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 563 QDMKS---------EGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 563 ~~m~~---------~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+++.. .|.+-+...|.......-+.+.+++|.++..+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33322 144455667777777777888888877776553
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.1e-06 Score=80.48 Aligned_cols=399 Identities=13% Similarity=0.049 Sum_probs=219.7
Q ss_pred HHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 007461 89 GMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF 168 (603)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 168 (603)
+.+..+++.. |..+|..++..+ ++|...|..-..+|++.|++++|++=-.+-++.. +.-...|+....++.-.|++
T Consensus 11 aa~s~~d~~~-ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFET-AIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHH-HHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 4556677766 999999888764 5677788889999999999999888777776664 44467888888888888999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHHcCCHHHHHHH
Q 007461 169 KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIM-----EAYYKIGDSEKVAAL 243 (603)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~g~~~~a~~~ 243 (603)
++|+..|.+-++..+.+...++.+..++.-. . ++-+.|. ++..|..+. +.+...-.+...++.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 9999999998888888888888888887111 1 1111111 122222111 111111111111111
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHH-----HHHC-------CCCC-------------------
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD-----MKEK-------GILE------------------- 292 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~-------g~~p------------------- 292 (603)
+. +++.. +..|....+...+.-.+.. +... +..|
T Consensus 155 ~~----~~p~~-----------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~ 219 (539)
T KOG0548|consen 155 IQ----KNPTS-----------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR 219 (539)
T ss_pred hh----cCcHh-----------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH
Confidence 11 11100 0001110001111100000 0000 0011
Q ss_pred ---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 007461 293 ---DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCA 369 (603)
Q Consensus 293 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
-..-...+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+.+....-+...+.|-. ...-|+.
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~kl 296 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKL 296 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHH
Confidence 01124456666666777777887777777765 46666667777788888777776666655554432 1112222
Q ss_pred -------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 007461 370 -------IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442 (603)
Q Consensus 370 -------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (603)
+..+|.+.++++.++..|.+.......|+.. .+....+++....+...-.+... ..-...-..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGn 366 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGN 366 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHH
Confidence 2335555677777887777755544333322 12222333333333322222111 111111244
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHH
Q 007461 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFD 521 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~ 521 (603)
.+.+.|++..|...+.++++.. +-|...|....-+|.+.|.+..|++-.+..++. .|+. ..|..=..++....+++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777776653 446666777777777777777777766666543 3333 23433344444455677
Q ss_pred HHHHHHHHHHHCC
Q 007461 522 MCVKFYNEFRMNG 534 (603)
Q Consensus 522 ~a~~~~~~~~~~~ 534 (603)
.|.+.|++.++.+
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777766653
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.2e-06 Score=78.47 Aligned_cols=401 Identities=12% Similarity=0.006 Sum_probs=232.4
Q ss_pred hhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 80 AKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE-KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
...|..-..+++..+++.+ |++=-.+-.+ +.|+ +.-|+....++.-.|++++|+.-|.+-.+.. +.+...++.+
T Consensus 36 hvlySnrsaa~a~~~~~~~-al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl 110 (539)
T KOG0548|consen 36 HVLYSNRSAAYASLGSYEK-ALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGL 110 (539)
T ss_pred cchhcchHHHHHHHhhHHH-HHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhH
Confidence 4457777888888888877 5544444433 3444 6789999999999999999999999988775 5567777888
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc-HHHHHH-HHHHHHhCCCCCChhh---HHHHHHHHHH
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM-YYSTIL-VYEKMKSAGIVLDSGC---YCQIMEAYYK 233 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~-~~~~m~~~~~~p~~~~---~~~ll~~~~~ 233 (603)
..++... .. +.+.| .++..|..+..--..... .+.+.. +++.+.+ +.. +... ...++.+...
T Consensus 111 ~~a~~~~--~~-~~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~-~p~-~l~~~l~d~r~m~a~~~ 177 (539)
T KOG0548|consen 111 AQAYLED--YA-ADQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK-NPT-SLKLYLNDPRLMKADGQ 177 (539)
T ss_pred HHhhhHH--HH-hhhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc-CcH-hhhcccccHHHHHHHHH
Confidence 8777211 11 11111 122222222211111100 001111 1111111 000 0000 0111111111
Q ss_pred cCCHHHH-HHHHHHHH----------hCCCCCCCcc----------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 007461 234 IGDSEKV-AALFLECK----------SRKLDSTPFS----------THMYKILCDSLGKSGRAFEALKFFRDMKEKGILE 292 (603)
Q Consensus 234 ~g~~~~a-~~~~~~~~----------~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 292 (603)
....+.- ...-..+. .....+...+ ..-.-.+.....+..+++.|++-+....+.. -
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~ 255 (539)
T KOG0548|consen 178 LKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--T 255 (539)
T ss_pred HhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--h
Confidence 1000000 00000000 0000000000 1235567788888889999999999888764 3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh
Q 007461 293 DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE-------VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDC 365 (603)
Q Consensus 293 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 365 (603)
+..-++..-.++...|...+....-....+.|-. ... .+..+..+|.+.++++.+...|.+.......|+.
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~- 333 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL- 333 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-
Confidence 4445566666788888888877777777666532 111 2222444677788999999999987665554432
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHH
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV-TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 444 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 444 (603)
..+....++++.......-.+ |... -.-.-.+.+.+.|++..|...|.++++.. +.|...|....-+|
T Consensus 334 --------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 334 --------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred --------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 233344555555555544332 3321 11222566788999999999999999987 77899999999999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516 (603)
Q Consensus 445 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 516 (603)
.+.|.+..|++=.+...+.. ++....|..=..++.-..+++.|.+.|.+.++. .|+..-+.--+.-|..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 99999999999888887751 333445555555666677899999999998865 4655444444443433
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.2e-05 Score=80.85 Aligned_cols=405 Identities=15% Similarity=0.180 Sum_probs=234.9
Q ss_pred CHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC---------c
Q 007461 116 EKSTLKLLIR--YLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE---------I 184 (603)
Q Consensus 116 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~ 184 (603)
|..|-..+++ .|.--|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|.-.+..|..... .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5566666665 3556788998887777653 456889999999999888877766665543221 0
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+...-..+.......|..++|+.++++-++ |..|=+.|-..|.+++|.++-+.-...... .+|..
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr------~Tyy~ 863 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR------NTYYN 863 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh------hhHHH
Confidence 112222333344567889999999988765 344556777889999998887643332222 36777
Q ss_pred HHHHHhccCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 007461 265 LCDSLGKSGRAFEALKFFRDMK----------EKG---------ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325 (603)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~m~----------~~g---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 325 (603)
-...+-..++.+.|++.|++-. ... -.-|...|......+...|+.+.|..++..+.+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 7777778888888888876532 110 012333344444444456666666666655443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 326 LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI 405 (603)
Q Consensus 326 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 405 (603)
|-.+++..|-.|+.++|-++-++-. |......+.+.|-..|++.+|+.+|.+.+. |...
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnA 999 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNA 999 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHH
Confidence 4455666666777777776655432 333566677778888888888888776543 3333
Q ss_pred HHHHHhcC---------------ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHH--------HHH
Q 007461 406 INAYCRIA---------------LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK--------MKA 462 (603)
Q Consensus 406 l~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~ 462 (603)
|..|-..+ +.-.|-++|++. | .-+...+..|-+.|.+.+|+++-=+ ++.
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 33332222 122222333321 2 1122334457777777777665211 111
Q ss_pred cCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH
Q 007461 463 KGC--EPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM-NGGVIDR 539 (603)
Q Consensus 463 ~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~ 539 (603)
..+ ..|+...+...+-++.+.++++|..++-...+ |...+..|.. .+..--.++-+.|.- ++-.|+.
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccH
Confidence 112 23566667777777777778887777665542 2233333333 333333344444421 1122333
Q ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 007461 540 ----AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQ 592 (603)
Q Consensus 540 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~ 592 (603)
.....+.+.|.++|.+..|.+-|-+.-+ + ...++++.++|+.++
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcce
Confidence 2566778888899998888776655422 1 233566677777654
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.96 E-value=1.5e-06 Score=85.94 Aligned_cols=169 Identities=12% Similarity=0.178 Sum_probs=89.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007461 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALY 415 (603)
Q Consensus 336 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 415 (603)
+.+.....+|.+|+.+++.+++..... .-|..+...|...|+++.|.++|.+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344455566666666666666654421 235556666667777777766665421 244556666777777
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 416 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 495 (603)
+.|.++-.+.. |.......|-.-..-+-+.|++.+|.+++-.+. .|+. .|..|-++|..+..+++..+-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 76666655443 223344555555555555666666666554332 2332 245556666666555555443
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 496 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
-... -..|...+..-|...|++..|.+-|-+
T Consensus 877 h~d~---l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 877 HGDH---LHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred Chhh---hhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 2110 112334444445555555555555443
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=2.9e-05 Score=77.29 Aligned_cols=432 Identities=16% Similarity=0.167 Sum_probs=245.1
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHH--------------------hCCCC-
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPEKS-TLKLLIRYLVQSKKWDSIVSLSEDFK--------------------IYNVL- 149 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------~~~~~- 149 (603)
..+++.. |..+++.... .|+.. .|-.+.......|+.--|.+.|..+- +.|..
T Consensus 456 d~~df~r-a~afles~~~----~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdg 530 (1636)
T KOG3616|consen 456 DDGDFDR-ATAFLESLEM----GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDG 530 (1636)
T ss_pred ccCchHH-HHHHHHhhcc----CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCC
Confidence 4455544 7777776542 45554 46666666666666555555444321 11111
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
.+-+-...++..+. .++.+|..+|-+- ..-...+..|....++++++.+-+. .|.+.-...-.+.+.
T Consensus 531 t~fykvra~lail~--kkfk~ae~ifleq--------n~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q 597 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILE--KKFKEAEMIFLEQ--------NATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQ 597 (1636)
T ss_pred chHHHHHHHHHHHH--hhhhHHHHHHHhc--------ccHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHH
Confidence 11122222222222 2444555444321 1123345556666666766665432 222211222334555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--
Q 007461 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASI-- 307 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-- 307 (603)
++...|+-++|-++-. .+.. --+.|+.|.+.|.+..|.+....=.. +..|......+..++.+.
T Consensus 598 ~l~dt~qd~ka~elk~----sdgd--------~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~el 663 (1636)
T KOG3616|consen 598 ALMDTGQDEKAAELKE----SDGD--------GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGEL 663 (1636)
T ss_pred HHHhcCchhhhhhhcc----ccCc--------cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHH
Confidence 5666676666655421 1111 12346777777777766654321111 122333333333333332
Q ss_pred -----------CCHHHHHHHHHHHHHc---------CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 007461 308 -----------TEVKLAEELFKEAEEK---------GMLRDPEV-CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI 366 (603)
Q Consensus 308 -----------g~~~~a~~~~~~~~~~---------~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 366 (603)
.++++|.+.|++-... .++..+.. -......+...|+++.|...|-+...
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------- 734 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------- 734 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence 3333444333321110 01111111 11223334455666666555543321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
.-.-+.+-.....+.+|+.+++.++... .-..-|..+.+.|+..|+++.|+++|.+. ..++-.|.+|.+
T Consensus 735 ~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhc
Confidence 1233455667788999999999888764 23345778888999999999999998653 345667889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKF 526 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 526 (603)
.|+++.|.++-++... -......|-+-..-+-.+|++.+|+++|-.+. .|+ ..|..|-+.|..+..+++
T Consensus 804 ~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred cccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHH
Confidence 9999999998877653 23445556666666788999999998876653 355 347789999999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHh
Q 007461 527 YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~ 598 (603)
.++-... .-..+-..+..-|...|+.+.|..-|-+.- -|.+.++.|..++.|++|.++.+
T Consensus 873 v~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 873 VEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 8764321 122355567777888899998888765542 37777888888888888887765
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=1.2e-05 Score=89.88 Aligned_cols=338 Identities=8% Similarity=-0.035 Sum_probs=177.4
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----C-CccHHHHHHHHHHHh
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS----T-PFSTHMYKILCDSLG 270 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~-~~~~~~~~~li~~~~ 270 (603)
....|++..+..+++.+.......+..........+...|+++++..++......-... . .........+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 33445555555555544221111122233344455566778888877777654321110 0 001122223334456
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHH
Q 007461 271 KSGRAFEALKFFRDMKEKGILEDP----SIYASLICSFASITEVKLAEELFKEAEEKGML---R--DPEVCLKLVLMYIE 341 (603)
Q Consensus 271 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~ 341 (603)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+....... + .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 678888888888776653111121 22344444556678888887777776643111 1 12334455666777
Q ss_pred cCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHH
Q 007461 342 EGLVEKTLDVVESMKNA----KLK--I-SDCISCAIVNGFSKRRGYWAAVKVYEQLISQG--CIPG--QVTYASIINAYC 410 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~ 410 (603)
.|++++|...+++..+. +.. + ....+..+...+...|++++|...+++..... ..+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888887777665431 111 1 12233444555666788888877777654421 1111 223334445566
Q ss_pred hcCChHHHHHHHHHHHHcCCC-cCHhhH-----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHh
Q 007461 411 RIALYSKAEKVFIEMQQKGFD-KCVVAY-----SSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN---VWIYNSLMDMHGR 481 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~ 481 (603)
..|+.++|...+......... .....+ ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 778888887777776442100 000001 1112334456777777777666543211111 1113345556777
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 482 AKNLRQVEKLWKEMERR----KVTPD-KVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888887777776432 22222 134555666777778888888888777654
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1e-06 Score=77.95 Aligned_cols=289 Identities=11% Similarity=0.063 Sum_probs=133.3
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHH-HHHHHH
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYK-ILCDSL 269 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~li~~~ 269 (603)
+++..+.+..++..|++++..-.++..+ +....+.|..+|.+..++..|...++++....+.... |. --...+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q-----YrlY~AQSL 88 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ-----YRLYQAQSL 88 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH-----HHHHHHHHH
Confidence 3333344444455555544444433211 3334444445555555555555555554433322111 11 123444
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007461 270 GKSGRAFEALKFFRDMKEKGILEDPSIYASLICS--FASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEK 347 (603)
Q Consensus 270 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 347 (603)
.+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..++.++++....| +..+.+...-...+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5555566666665555431 111111111111 123455555555555443211 33344444444456666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CHH--------------
Q 007461 348 TLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIP-------------GQV-------------- 400 (603)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-------------~~~-------------- 400 (603)
|.+-|....+-+--.....|+.-+ +..+.++++.|++...++++.|++- |..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 666666555433222223444333 3344566666666666666555331 111
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 007461 401 -TYASIINAYCRIALYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478 (603)
Q Consensus 401 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 478 (603)
.+|.-...+.+.|+.+.|.+.+-.|.-. .-..|++|...+.-.- -.+++.+..+-+.-+.+.+ +-...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 1122222344566667676666666422 2234555555443222 1344444444444444432 2244566667777
Q ss_pred HHhcCCHHHHHHHHHH
Q 007461 479 HGRAKNLRQVEKLWKE 494 (603)
Q Consensus 479 ~~~~g~~~~a~~~~~~ 494 (603)
||++.-++.|..++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 7777777777666655
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=0.00015 Score=74.98 Aligned_cols=77 Identities=6% Similarity=0.093 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 207 LVYEKMKSAGIV--LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 207 ~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
++.+..++.+++ .|+.-.+..++++...+-..+..++++++.-.+..... +...-|.|+-.-.+.. ..+..+..++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse-~~nLQnLLiLtAikad-~trVm~YI~r 1045 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE-NRNLQNLLILTAIKAD-RTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccccc-chhhhhhHHHHHhhcC-hHHHHHHHHH
Confidence 456666654432 35556667777888888888888888877654432221 2233444444333332 2334444444
Q ss_pred H
Q 007461 285 M 285 (603)
Q Consensus 285 m 285 (603)
+
T Consensus 1046 L 1046 (1666)
T KOG0985|consen 1046 L 1046 (1666)
T ss_pred h
Confidence 4
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=3.5e-05 Score=77.69 Aligned_cols=303 Identities=14% Similarity=0.139 Sum_probs=193.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN---------VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA 185 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (603)
.+...|..+...|.+.++++-|.-.+-.|.... -.|+ .+-..+.-.....|.+++|..++++..+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 366789999999999988887776666654221 1121 1111122223467899999999998876
Q ss_pred hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH----------hCCCCC-
Q 007461 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK----------SRKLDS- 254 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~~~~- 254 (603)
|..|=+.|-..|++++|.++-+.--+..+. .||..-..-+-..+|.+.|++.|++.. ..++..
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 445556777889999999987654333332 367777777777889999998887532 111110
Q ss_pred -----CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 007461 255 -----TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDP 329 (603)
Q Consensus 255 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 329 (603)
...+...|.--...+-..|+.+.|+.+|...++ |-++++..+-.|+.++|.++-++- -|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccH
Confidence 001223455566667778889999988877654 567777778899999998887652 377
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcC
Q 007461 330 EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRR---------------GYWAAVKVYEQLISQG 394 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---------------~~~~a~~~~~~m~~~g 394 (603)
...-.|.+.|-..|++.+|...|.+... +..-|+.|-.++ +.-.|-++|++.-
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g--- 1035 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG--- 1035 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---
Confidence 7788899999999999999999987652 333333222221 2223334444321
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------HHHc--CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 395 CIPGQVTYASIINAYCRIALYSKAEKVFIE--------MQQK--GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 395 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
.-+...+..|-+.|.+.+|+++-=+ ++.. ....|+...+.-.+-++...++++|..++-...
T Consensus 1036 -----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1036 -----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred -----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1123334456777877777665211 1122 223456666666677777777777777765544
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.90 E-value=1.8e-05 Score=81.42 Aligned_cols=375 Identities=10% Similarity=0.018 Sum_probs=202.2
Q ss_pred ChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHH
Q 007461 96 TQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA--HTCSRLVASCVRARKFKIANT 173 (603)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~ 173 (603)
...+|.+.|+.+.+.+ .-+...+.....-|++..+|+.|..+.-...+.. +.-. ..|..+.-.|.+.++...|..
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHH
Confidence 4446999999998864 4567788899999999999999999844333221 1122 233344445778899999999
Q ss_pred HHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHH--HHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 174 LLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQ--IMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
-|+...+.+|.|...|..++.+|.+.|++..|+++|.+.... .|+. +|.. ..-.-+..|.+.+|...+..+....
T Consensus 584 ~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 584 EFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988764 4433 3332 3334567899999999887765432
Q ss_pred CCCC---CccHHHHHHHHHHHhccCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 252 LDST---PFSTHMYKILCDSLGKSGRAFEALKFFRDMKE-------KGILEDPSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 252 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
..-. .....++-.+...+...|-...|.+.+++-++ .....+...|..+-.+| .+|....
T Consensus 661 s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac----------~~f~q~e 730 (1238)
T KOG1127|consen 661 SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC----------YIFSQEE 730 (1238)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH----------HHHHHhc
Confidence 1100 00122333333334444444444444444332 11111222222222222 1222211
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCH---H---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--------cCCHHHHHHHH
Q 007461 322 EKGMLRDPEVCLKLVLMYIEEGLV---E---KTLDVVESMKNAKLKISDCISCAIVNGFSK--------RRGYWAAVKVY 387 (603)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~a~~~~ 387 (603)
.. .|+......|..-.-..+.. | -+.+.+-.-.. ...+..+|..+...|.+ ..+...|+..+
T Consensus 731 -~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 731 -PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred -cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 11 12222222222212222211 1 00111110000 01112234444433333 11223566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 007461 388 EQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467 (603)
Q Consensus 388 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 467 (603)
.+.++.. .-+..+|+.+.- ....|++.-+...|-+-.... +.+..+|..+.-.+.+..+++.|...|...... .+.
T Consensus 807 KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL-dP~ 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL-DPL 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc-Cch
Confidence 6655432 233444444433 355566666666555544443 445566666666667777777777777666553 122
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 468 NVWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
|...|-.........|+.-++..+|..
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344444433334445555555555544
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=1.3e-05 Score=89.62 Aligned_cols=297 Identities=10% Similarity=-0.021 Sum_probs=138.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----hhHHHH
Q 007461 303 SFASITEVKLAEELFKEAEEKGM------LRD--PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD----CISCAI 370 (603)
Q Consensus 303 ~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l 370 (603)
.+...|+.+++..++..+.+.-- .+. ......+...+...|++++|...++...+.....+. ...+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 33455666666666665543210 001 111122233445566777776666665542111111 123344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--c-CHhhHH
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQGC---IPG--QVTYASIINAYCRIALYSKAEKVFIEMQQK----GFD--K-CVVAYS 438 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~ 438 (603)
...+...|++++|...+++.....- .+. ..++..+...+...|++++|...+++.... +.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 4455566777777666666543210 011 123334444556667777776666654432 111 1 122233
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc--CCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHH--H--HH
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAK--GCEP--NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK--VTPDKV--S--YT 508 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~--~~ 508 (603)
.+...+...|++++|...+++.... ...+ ....+..+...+...|+.++|...+.+..... ...... . ..
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 4444555567777776666665432 1111 12233334445556677777766666653211 000000 0 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHH
Q 007461 509 TVISAYNRAREFDMCVKFYNEFRMNGGVIDR---AIAGIMVGVFSKLSQIEELVKLLQDMKSE----GTKLD-ERLYHSA 580 (603)
Q Consensus 509 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~l 580 (603)
..+..+...|+.+.|..++............ ..+..+..++...|++++|...+++.... |...+ ..+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1123334456666666665554332111110 11234555566667777776666665542 22222 1234444
Q ss_pred HHHHHhcCcHHHHHHHHhh
Q 007461 581 MNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 581 l~a~~~~g~~~~a~~~~~~ 599 (603)
..++...|+.++|...+++
T Consensus 738 a~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4556666776666666554
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=0.00024 Score=73.58 Aligned_cols=476 Identities=12% Similarity=0.110 Sum_probs=249.2
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 86 FLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKS--TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
-|..+|...+..+.|++.|..+...-.....+. .-..++ .+...-.++.+.+.++.|...++..+..+...+..-|.
T Consensus 611 ~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~ 689 (1666)
T KOG0985|consen 611 EIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYH 689 (1666)
T ss_pred HHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355556555555568877765542110000010 011223 33444457777888888887777777777766666666
Q ss_pred ccCChHHHHHHHHHHHhcC------------CcchhhHHHHHhhhhhcCcHHHHHHHHHHH------------HhC----
Q 007461 164 RARKFKIANTLLQVFITDG------------EIALLAFNSAMGGYNKLHMYYSTILVYEKM------------KSA---- 215 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------------~~~---- 215 (603)
..=-.+..+++|+.+.... ..|+.+.-..|.+.++.|++.+...+.++- ++.
T Consensus 690 eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~D 769 (1666)
T KOG0985|consen 690 EQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTD 769 (1666)
T ss_pred HHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccc
Confidence 6655566666766655432 136677777778888888777666544331 111
Q ss_pred -----------CCCCChhhHH------HHHHHHHHcCCHHHHHHHHHHHHh---------------CCCCCCCccHHHHH
Q 007461 216 -----------GIVLDSGCYC------QIMEAYYKIGDSEKVAALFLECKS---------------RKLDSTPFSTHMYK 263 (603)
Q Consensus 216 -----------~~~p~~~~~~------~ll~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~~~~~~~ 263 (603)
|+.+|.+.|. ..|..|.+.=+..+.-.+...+.. +|..| -+
T Consensus 770 qlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~-------~d 842 (1666)
T KOG0985|consen 770 QLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP-------VD 842 (1666)
T ss_pred cCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC-------hH
Confidence 1122222111 112222222111111111111110 11111 23
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHH---HHH-----H-HH-----------H
Q 007461 264 ILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITE-VKLAEE---LFK-----E-AE-----------E 322 (603)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~---~~~-----~-~~-----------~ 322 (603)
.|+.-.-+.++..--+..++.....|.+ |..+++++...|...++ .+.-.+ .++ + .. +
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 3444445555565566666666677655 77777777777765433 221110 000 0 00 1
Q ss_pred cCC--------CCCHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHH
Q 007461 323 KGM--------LRDPEVCLKLVLMYIEEGLVEKT-----------LDVVESMKNAKL--KISDCISCAIVNGFSKRRGYW 381 (603)
Q Consensus 323 ~~~--------~~~~~~~~~l~~~~~~~g~~~~a-----------~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~ 381 (603)
+|. -.....|....+.+.+..+.+-- +.+.++..+-.+ ..|..-.+..+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 110 01112333344444444443322 234455444332 123344666777788888888
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHH---------------------------HHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 382 AAVKVYEQLISQGCI--PGQVTYASIIN---------------------------AYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~--p~~~~~~~ll~---------------------------~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
+.+++++++.-.... -+...-+.++- .+...+-+++|..+|+... .
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~ 1076 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----M 1076 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----c
Confidence 888888877643211 11111111211 1223334444555544321 1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 512 (603)
+....+.||. ..+..+.|.++-++.. ....|+.+..+-.+.|...+|++-|-+.- |+..|.-++.
T Consensus 1077 n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~ 1141 (1666)
T KOG0985|consen 1077 NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVID 1141 (1666)
T ss_pred cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHH
Confidence 2233333332 2244455554444432 45678888888888888888877665432 6677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 007461 513 AYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQ 592 (603)
Q Consensus 513 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~ 592 (603)
.+.+.|.|++-.+++...+++.-.|...+ .||-+|.+.++..+..+++ .-|+......+.+-|...|.++.
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHH
Confidence 88888999888888888777655555443 5777888888877665553 23666667777777777777777
Q ss_pred HHHHHhh
Q 007461 593 AQWLQQN 599 (603)
Q Consensus 593 a~~~~~~ 599 (603)
|.-++..
T Consensus 1213 Akl~y~~ 1219 (1666)
T KOG0985|consen 1213 AKLLYSN 1219 (1666)
T ss_pred HHHHHHH
Confidence 7666544
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.83 E-value=0.00014 Score=70.14 Aligned_cols=186 Identities=11% Similarity=0.121 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHccCCHHHHHH
Q 007461 380 YWAAVKVYEQLISQGCIPGQVTYASIINAYCR---IALYSKAEKVFIEMQQKG-FDKCVVAYSSMVAMYGKTGRIRDAMW 455 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 455 (603)
.+++..+++.....-..-+..+|..+.+.--. .+..+....+++++.... ..| .-+|..+++.--+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 34566666665543222333344333322111 112455566666665542 344 3567888888888888899999
Q ss_pred HHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 456 LVAKMKAKGCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 456 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
+|.+..+.+..+ ++.++++++.-||. ++..-|.++|+-=.+. ..-+..-....+.-+.+.++-..+..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999998876666 77788888877765 5778889998875432 22233344666777778888888999999998886
Q ss_pred CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 535 GVIDR--AIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 535 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
+.+|. .+|+.+++.=+.-|+.+.+.++-+++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66655 58999999888899999988888877653
No 102
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=9.5e-06 Score=76.81 Aligned_cols=189 Identities=7% Similarity=-0.003 Sum_probs=111.7
Q ss_pred HhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 007461 90 MLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK-KWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF 168 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 168 (603)
+...+... .|+.++..+++.. +-+..+|+.....+...| ++++++..++.+.+.+ +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~se-rAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 47 YASDERSP-RALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHcCCCCH-HHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33444444 4888888887652 223345666666666666 5677888887777665 44555666555555555542
Q ss_pred --HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---CCH----HH
Q 007461 169 --KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI---GDS----EK 239 (603)
Q Consensus 169 --~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~----~~ 239 (603)
+++...++.+.+.++.+..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56677777777777777777777777777777777777777777776554 555666655555444 222 23
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc----CCHHHHHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKS----GRAFEALKFFRDMKE 287 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~ 287 (603)
..+........++. |..+|+.+...+... ++..+|.+.+.+...
T Consensus 202 el~y~~~aI~~~P~----N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPR----NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCC----CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 44444444444332 223566665555542 223344444444433
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.00021 Score=69.05 Aligned_cols=152 Identities=12% Similarity=0.131 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHhhHHHHHHHHHccCCHHHHHHHHH
Q 007461 380 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK-CVVAYSSMVAMYGKTGRIRDAMWLVA 458 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (603)
.+....+++++...-..--..+|...|+...+..-+..|..+|.+..+.+..+ ++.++++++.-|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566677776654322233568888888888888999999999999887666 7888899998777 588999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 459 KMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK--VSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 459 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.-+++ ..-+..--...++-+...++-..+..+|++.+..++.||. ..|..++.-=+.-|++..+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 87765 2334444566778888899999999999999988777665 57999999989999999999998877654
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=0.00013 Score=66.38 Aligned_cols=313 Identities=12% Similarity=0.049 Sum_probs=165.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHHc
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYC-QIMEAYYKI 234 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~ 234 (603)
.-+...+...|++.+|+.-|....+.+|.+-.++---...|...|+...|+.-+.+.++. .||-..-. .-...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 334444555555666665555555554444444444445555556655566555555542 44432211 122345566
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcc---------HH--HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007461 235 GDSEKVAALFLECKSRKLDSTPFS---------TH--MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICS 303 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~---------~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (603)
|.+++|..=|+.+...++...... .. .....+..+...|+...|++....+++.. .-|...|..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 666666666666665544221100 00 11223344455666666666666666541 2255556666666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 007461 304 FASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAA 383 (603)
Q Consensus 304 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 383 (603)
|...|++..|..=++.+.+... -+...+-.+-..+...|+.+.++..+++..+.++ +...+ |..-....+.
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp--dHK~C------f~~YKklkKv 269 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP--DHKLC------FPFYKKLKKV 269 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc--chhhH------HHHHHHHHHH
Confidence 6666666666665555554432 2444444555566666666666666666655443 21111 0000111111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh---hHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 384 VKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV---AYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 384 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
.+.++.| ......+++.++.+-.+...+........ .+..+-.++...|++.+|++.-.+.
T Consensus 270 ~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 270 VKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 1112221 12334566666666666666653221222 3334445556677788888887777
Q ss_pred HHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 461 KAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498 (603)
Q Consensus 461 ~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 498 (603)
++. .|| +.++---..+|.-...++.|+.-|+...+.
T Consensus 334 L~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 334 LDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred Hhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 764 444 666666667777777788888888877754
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.7e-06 Score=83.84 Aligned_cols=222 Identities=10% Similarity=0.015 Sum_probs=113.5
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
.+.|++.+|.-+|+...+.+|.+..+|..|......+++-..|+..+++..+.+.. |......|.-.|...|.-..|.+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHH
Confidence 34555666666666666655556666666666666666666666666655554322 44455555555555555555555
Q ss_pred HHHHHHhCCCCC-----CCccHHHHHHHHHHHhccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007461 243 LFLECKSRKLDS-----TPFSTHMYKILCDSLGKSGRAFEALKFFRDMK-EKGILEDPSIYASLICSFASITEVKLAEEL 316 (603)
Q Consensus 243 ~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 316 (603)
.++......+.- ...+...-+. ..+.....+....++|-++. ..+..+|......|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 555543221110 0000000000 12223333444445554443 223334555555555555556666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 317 FKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (603)
|+.++... +.|..+||.|...++...+.++|+..|.+..+..+.. +.++..|.-.|...|.+++|.+.|-.
T Consensus 453 f~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 453 FEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 66665543 2355566666666666666666666666666554421 22344455556666666666665544
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=8.2e-07 Score=82.85 Aligned_cols=255 Identities=10% Similarity=0.033 Sum_probs=160.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 007461 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381 (603)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 381 (603)
+-+.-.|++..+..-.+ ........+.....-+.++|...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445788888876555 222222223445556778888999877544 4443433 455555555555444435556
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 382 AAVKVYEQLISQGCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
.++.-+++.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555544333232 2222233334566789999998887642 35677788889999999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 461 KAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
.+. ..|... ..+..++.. ...+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+..
T Consensus 158 ~~~--~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 874 444433 334444332 34688999999998764 5678888899999999999999999999998766544
Q ss_pred CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCH
Q 007461 537 IDRAIAGIMVGVFSKLSQI-EELVKLLQDMKSEGTKLDE 574 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~~ 574 (603)
++.+...++-+....|+. +.+.+.+.++.+. .|+.
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 556666677777777776 6677888887754 4543
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=4.2e-07 Score=84.77 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=95.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----c
Q 007461 372 NGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----T 447 (603)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 447 (603)
..+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 3445567777777766542 344556667777778888888888888877653 22 233334433332 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 007461 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF-DMCVKF 526 (603)
Q Consensus 448 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~ 526 (603)
+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|++++.+..+... -|..++..++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577888888887654 556777778888888888888888888888765432 2445666677766777776 566777
Q ss_pred HHHHHHC
Q 007461 527 YNEFRMN 533 (603)
Q Consensus 527 ~~~~~~~ 533 (603)
+.+++..
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 7777664
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=3.9e-06 Score=81.35 Aligned_cols=255 Identities=15% Similarity=0.105 Sum_probs=191.3
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS 272 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 272 (603)
..-+.+.|...+|.-.|+..++.++. +...|..|.......++-..|+..+++..+.++. |..+.-.|.-.|...
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~----NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT----NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc----cHHHHHHHHHHHhhh
Confidence 34467889999999999999887654 8889999999999999999999999999877654 467889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcC
Q 007461 273 GRAFEALKFFRDMKEKGIL--------EDPSIYASLICSFASITEVKLAEELFKEA-EEKGMLRDPEVCLKLVLMYIEEG 343 (603)
Q Consensus 273 g~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g 343 (603)
|.-.+|++++++.+....+ ++...-.. ........+....++|-++ .+.+...|+.+...|.-.|.-.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999999888653211 01100000 1112222333444444444 44455579999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 007461 344 LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ-VTYASIINAYCRIALYSKAEKVF 422 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 422 (603)
++++|.+.|+......+ -|...||.|...++...+.++|+..|++..+. .|+- .....|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999998877 47778999999999999999999999999885 4553 23445566789999999999988
Q ss_pred HHHHH---c------CCCcCHhhHHHHHHHHHccCCHHHHHHHH
Q 007461 423 IEMQQ---K------GFDKCVVAYSSMVAMYGKTGRIRDAMWLV 457 (603)
Q Consensus 423 ~~~~~---~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (603)
-..+. . +..++...|..|=.++.-.++.+-+.+..
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 76542 2 12234567877777777778777555544
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.4e-06 Score=86.66 Aligned_cols=221 Identities=12% Similarity=0.067 Sum_probs=179.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 326 LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI 405 (603)
Q Consensus 326 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 405 (603)
+|--..-..+...+.+.|-...|..+|+++. .|.-+|.+|...|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3344455568888999999999999999875 5888999999999999999999998873 7899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 007461 406 INAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485 (603)
Q Consensus 406 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 485 (603)
.+......-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888888889999998875443 11111222234789999999999877652 34567888888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 486 RQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 486 ~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
..|.+.|..... ..||. ..||.+-.+|.+.|+-.+|...+++..+.+.. +..+|...+-...+.|.+++|++.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999984 46766 56999999999999999999999999998744 556677777788899999999999998
Q ss_pred HHhC
Q 007461 565 MKSE 568 (603)
Q Consensus 565 m~~~ 568 (603)
+.+.
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 8764
No 110
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=2.4e-05 Score=74.15 Aligned_cols=226 Identities=11% Similarity=-0.026 Sum_probs=172.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH--H
Q 007461 127 LVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR-KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY--Y 203 (603)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 203 (603)
+...++.++|+.+.+++++.+ +-+..+|+..-..+...| ++++++..++++...++.+..+|+.....+.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 334567889999999998876 445567777766777777 689999999999999999999999877667667763 6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc---CC----HH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS---GR----AF 276 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~ 276 (603)
+++.+++++.+.+.. |..+|+....++.+.|+++++++.++++.+.++.. ..+|+.....+.+. |. .+
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N----~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN----NSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc----hhHHHHHHHHHHhccccccccccHH
Confidence 789999999987654 88899999999999999999999999999887654 34788777666554 33 35
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---------
Q 007461 277 EALKFFRDMKEKGILEDPSIYASLICSFASI----TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG--------- 343 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 343 (603)
+.++...+++... +-|...|+-+...+... +...+|.....++.+.+ +.+......|++.|+...
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 7888887887763 23677888887777763 34566888888877654 346778888999998642
Q ss_pred ---------CHHHHHHHHHHHHhCCC
Q 007461 344 ---------LVEKTLDVVESMKNAKL 360 (603)
Q Consensus 344 ---------~~~~a~~~~~~~~~~~~ 360 (603)
..++|.++++.+.+.++
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhccccccccHHHHHHHHHHHHhhCc
Confidence 34789999999965443
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=4.9e-06 Score=76.52 Aligned_cols=184 Identities=14% Similarity=0.025 Sum_probs=81.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE-KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA---HTCSRL 158 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 158 (603)
+......+...++..+ |...|+.+.....-.|. ...+..+...+.+.|++++|...++++.+... .+. .++..+
T Consensus 36 ~~~~g~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~ 113 (235)
T TIGR03302 36 LYEEAKEALDSGDYTE-AIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHHHHH
Confidence 4444444555555554 66666665543211111 12445555666666666666666666655431 111 123333
Q ss_pred HHHHHcc--------CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 159 VASCVRA--------RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 159 l~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
...+... |+++.|.+.++.+....|.+...+..+....... .... .....+...
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----------~~~~--------~~~~~~a~~ 175 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----------NRLA--------GKELYVARF 175 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----------HHHH--------HHHHHHHHH
Confidence 3333322 3444555555555444443333222221110000 0000 001133444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
|.+.|++++|...++......+.. +.....+..+..++.+.|++++|...++.+..
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDT-PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555566666666665555443221 11234555556666666666666665555543
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=1.7e-05 Score=84.49 Aligned_cols=238 Identities=13% Similarity=0.041 Sum_probs=174.1
Q ss_pred HHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 175 LQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL-----DSGCYCQIMEAYYKIGDSEKVAALFLECKS 249 (603)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 249 (603)
|++.....|.....|-..|......++.++|++++++.+.. +.+ -...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44555555667778888888888888888888888887653 211 123677777777777888888888988876
Q ss_pred CCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC
Q 007461 250 RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML-RD 328 (603)
Q Consensus 250 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 328 (603)
..-. ...|..|...|.+.+.+++|-++|+.|.++ ..-....|...+..+.+.++-+.|+.++.++++.-.. -.
T Consensus 1526 ycd~-----~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1526 YCDA-----YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred hcch-----HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 5432 236888889999999999999999999876 2345677888888888888888999999888775221 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ--VTYASII 406 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 406 (603)
.......+.+-.+.|+.+.+..+|+......++ -...|+.+|..=.+.|+.+.+..+|++....++.|-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 455666777778889999999999988877664 3347888999888899999999999998887766543 3445555
Q ss_pred HHHHhcCChHHHHH
Q 007461 407 NAYCRIALYSKAEK 420 (603)
Q Consensus 407 ~~~~~~g~~~~a~~ 420 (603)
..=-+.|+-..++.
T Consensus 1679 eyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHhcCchhhHHH
Confidence 44444455444333
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=2.6e-05 Score=83.18 Aligned_cols=226 Identities=11% Similarity=0.067 Sum_probs=143.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHH
Q 007461 364 DCISCAIVNGFSKRRGYWAAVKVYEQLISQ-GCIPGQ---VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSS 439 (603)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (603)
...|-..|....+.++.++|.++.++.... ++.-.. ..|.++++.-...|.-+...++|+++.+.- .| ...|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~-~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DA-YTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-ch-HHHHHH
Confidence 344666666666666777777766665542 111111 234455555455566677777777777652 22 456777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK---VSYTTVISAYNR 516 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~ 516 (603)
|...|.+.+.+++|.++++.|.++ +.....+|...+..+.++++-+.|..++.+..+. -|.. ....-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 777788888888888888887765 3456677777777777777777777777777643 2331 122333334456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCcHHHHH
Q 007461 517 AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE--RLYHSAMNALRDAGLQMQAQ 594 (603)
Q Consensus 517 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~a~~~~g~~~~a~ 594 (603)
.|+.+++..+|+......++ -...|+.+++.-.++|+.+.+..+|++....++.|-. ..|...+.-=..+|+.+.++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 77888888888777765433 4567777888777888888888888888777766543 34555554445556654443
Q ss_pred H
Q 007461 595 W 595 (603)
Q Consensus 595 ~ 595 (603)
.
T Consensus 1692 ~ 1692 (1710)
T KOG1070|consen 1692 Y 1692 (1710)
T ss_pred H
Confidence 3
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.1e-08 Score=56.84 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=28.5
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 215 AGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 215 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
.|+.||..||+.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888773
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=6.8e-08 Score=56.92 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=10.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 007461 466 EPNVWIYNSLMDMHGRAKNLRQVEKLWK 493 (603)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~a~~~~~ 493 (603)
.||..+|++||++|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=1.4e-05 Score=76.14 Aligned_cols=144 Identities=13% Similarity=0.022 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (603)
-....+...|++++|+..++.++... +.|...+......+.+.++.++|.+.++.+....|.....+-.+..+|.+.|+
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence 33444556788888888888877653 45566666677778888888888888888888777667777888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 007461 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 281 (603)
+.+|+..++....... -|+..|..|..+|...|+..++..-. ...|.-.|++++|+..
T Consensus 390 ~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~---------------------AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 390 PQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLAR---------------------AEGYALAGRLEQAIIF 447 (484)
T ss_pred hHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHH---------------------HHHHHhCCCHHHHHHH
Confidence 8888888888776643 37778888888888888877766543 3445667788888888
Q ss_pred HHHHHHC
Q 007461 282 FRDMKEK 288 (603)
Q Consensus 282 ~~~m~~~ 288 (603)
+....+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 7777655
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.3e-05 Score=70.21 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=130.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
+... ..+...+...|+-+....+........ +.|.......+....+.|++..|...+++.....++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 4444 666777888888888888877754332 45666777788888999999999999999999989999999999999
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
|.+.|+++.|..-|.+..+.-.. ++..++.|.-.|.-.|+.+.|+.++.......... ...-..+.......|++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad----~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD----SRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHhhcCCh
Confidence 99999999999999888886433 56678888888888899999999998877665432 35678888888999999
Q ss_pred HHHHHHHHHHH
Q 007461 276 FEALKFFRDMK 286 (603)
Q Consensus 276 ~~A~~~~~~m~ 286 (603)
++|.++...-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 99988765543
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=1e-05 Score=70.95 Aligned_cols=154 Identities=8% Similarity=-0.030 Sum_probs=127.3
Q ss_pred HHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007461 88 HGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK 167 (603)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 167 (603)
..+...|+..+ .......... ..+.+....+..+....+.|++..|...+++..... ++|..+|+.+.-+|.+.|+
T Consensus 74 ~a~~~~G~a~~-~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 74 TALYLRGDADS-SLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHhcccccc-hHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 33444455544 3333333322 224566777789999999999999999999998876 8899999999999999999
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 246 (603)
++.|+..|.+..+..+.+....|.+...|.-.|+.+.|..++......+.. |..+-..+.......|++++|+.+-..
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999999999999999999999999999999999999999999998876543 677788888899999999999988654
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=4.1e-05 Score=80.10 Aligned_cols=135 Identities=7% Similarity=0.048 Sum_probs=84.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
..++..+..|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|+..+++.....+.+....+.+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4456666666666666666666666666666553 233445555666666666666666666666666666666666666
Q ss_pred hhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
.++.+.|++++|..+|+++...+. -+..++..+...+-+.|+.++|...|+.....
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666665322 13556666666666666666666666665544
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=1.9e-05 Score=69.57 Aligned_cols=156 Identities=10% Similarity=0.093 Sum_probs=112.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
+..|...|+++.+....+.+.. |. ..+...++.+++...++.....+|.+...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3456777887776554432211 10 01123566777888888888888888889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHH-HHcCC--HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAY-YKIGD--SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
+|...|++..+.... +...+..+..++ ...|+ .++|.+++++....++.. ..++..+...+.+.|++++|+.
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~----~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE----VTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHcCCHHHHHH
Confidence 999999888886533 667777777764 66676 488999998888777653 4578888888888999999999
Q ss_pred HHHHHHHCCCCCCHHHH
Q 007461 281 FFRDMKEKGILEDPSIY 297 (603)
Q Consensus 281 ~~~~m~~~g~~p~~~~~ 297 (603)
.|+++.+.. .|+..-+
T Consensus 166 ~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHhhC-CCCccHH
Confidence 998887763 3444333
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=2.1e-05 Score=72.32 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=57.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchh---h
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA---HTCSRLVASCVRARKFKIANTLLQVFITDGEIALL---A 188 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 188 (603)
.....+..+...+.+.|++++|...++++.... +.+. .++..+..++...|++++|...++.+.+..|.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445566666777777777777777777776554 2222 35556666677777777777777777666553332 3
Q ss_pred HHHHHhhhhhc--------CcHHHHHHHHHHHHh
Q 007461 189 FNSAMGGYNKL--------HMYYSTILVYEKMKS 214 (603)
Q Consensus 189 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~ 214 (603)
+..+...+... |++++|.+.|+.+.+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 44444444332 344445555544444
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=1.3e-05 Score=80.03 Aligned_cols=221 Identities=14% Similarity=0.064 Sum_probs=169.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 218 VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297 (603)
Q Consensus 218 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 297 (603)
+|--..-..+...+...|-...|..+|++. ..|..+|.+|...|+...|..+..+..++ +||...|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 333334456778888999999999999875 36888999999999999999988888774 7888888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKR 377 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 377 (603)
..+.+...+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.++ ....+|-.+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHH
Confidence 88888777766778888877764332 222333334457889999998887766655 3455787888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHH
Q 007461 378 RGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLV 457 (603)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (603)
+++..|.+.|..-.... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+
T Consensus 533 ek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 99999999888877642 2344678999999999999999999999988887 455677777788888899999999988
Q ss_pred HHHHH
Q 007461 458 AKMKA 462 (603)
Q Consensus 458 ~~m~~ 462 (603)
.++.+
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 88765
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1.1e-05 Score=67.14 Aligned_cols=110 Identities=7% Similarity=-0.110 Sum_probs=84.5
Q ss_pred HHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 007461 101 YDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT 180 (603)
Q Consensus 101 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 180 (603)
..+|+.+.+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+....
T Consensus 13 ~~~~~~al~~---~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV---DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc---CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666653 233 35556777788888888888888887765 55777888888888888888888888888888
Q ss_pred cCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 181 DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
..+.+..++..+..++...|++++|+..|+...+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888877753
No 124
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.48 E-value=0.00099 Score=60.79 Aligned_cols=297 Identities=9% Similarity=0.021 Sum_probs=152.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
+...+..+|++..|+.-|...++.+ +.+-.++-.-...|...|+...|+.=|..+++..|.-..+-..-...+.+.|.+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 4444455555555555555544332 111112222223344445555555545554444332222223333344555555
Q ss_pred HHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 007461 203 YSTILVYEKMKSAGIVLD--------------SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS 268 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 268 (603)
++|..-|+.+++.....+ .......+..+...||...|++....+.+..+ ++...|..-..+
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~----Wda~l~~~Rakc 198 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP----WDASLRQARAKC 198 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc----chhHHHHHHHHH
Confidence 555555555554322100 00122334445566777777777777665432 234566666777
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------
Q 007461 269 LGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL------------- 335 (603)
Q Consensus 269 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 335 (603)
|...|.+..|+.-++..-+.. ..+..++--+-..+...|+.+.+....++.++.+ ||...+-..
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHH
Confidence 777777777776666554432 2244555555566667777777777777766643 333221110
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 007461 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDC---ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG-QVTYASIINAYCR 411 (603)
Q Consensus 336 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 411 (603)
+......++|-++.+-.+...+.++..... .+..+-.++...+++.+|++.-.+.... .|| ..++.--..+|.-
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhh
Confidence 112334455666666666555554432222 2334445555666677777666666553 333 5566666666666
Q ss_pred cCChHHHHHHHHHHHHcC
Q 007461 412 IALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~ 429 (603)
...++.|+.-|+...+.+
T Consensus 354 dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELN 371 (504)
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 666777776666666553
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=1.4e-05 Score=70.32 Aligned_cols=123 Identities=7% Similarity=-0.039 Sum_probs=99.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh-hhhcCc--HHHHH
Q 007461 130 SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG-YNKLHM--YYSTI 206 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~ 206 (603)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++.....+.+...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 556677777777777766 67788888888888889999999999999888888888888888876 466676 58899
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007461 207 LVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 207 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 254 (603)
+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.....
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999988887544 67788888888889999999999998887766553
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=0.00016 Score=76.66 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=84.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA-HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
+...+..|+..+...+++++|.++.+...+.. |+. ..|-.+...+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 34456666666666666666666666555443 332 2222222244444444333322 2222
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 195 GYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
......++.-...+...|.+.+ -+...+..+..+|-+.|+.++|..+++++.+.++. |..+.|.+...|... +
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~----n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD----NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHh-h
Confidence 2223333322222333333321 13335556666666666666666666666655522 345566666666666 6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 275 AFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
.++|.+++.+.... +...+++..+.+++.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 66666665555432 33444555666666665554
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=0.00014 Score=77.11 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=106.4
Q ss_pred hchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 81 KKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEK-STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159 (603)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 159 (603)
..+..++..+...++..+ |.++.+...+.+ |+. ..|-.+...+.+.++.+.+..+ . ++
T Consensus 32 ~a~~~Li~~~~~~~~~de-ai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 32 KELDDLIDAYKSENLTDE-AKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 347788888877777776 999999877753 333 3344444466777776665555 2 22
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 160 ASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
.......++.....+...+.. -+.+..++-.+..+|-+.|+.++|..+++++++.... |+.+.|.+...|+.. ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 333333334222333333332 2345557777888888888888888888888887633 777888888888888 8888
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
|++++.+...+ +...+++..+.+++.++...
T Consensus 168 A~~m~~KAV~~------------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 168 AITYLKKAIYR------------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHH------------------HHhhhcchHHHHHHHHHHhc
Confidence 88877665432 44455666666666666654
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00027 Score=62.18 Aligned_cols=250 Identities=11% Similarity=0.053 Sum_probs=158.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 007461 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381 (603)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 381 (603)
+-+.-.|++..+...-....... .+...-.-+.++|...|++.... .+++... .|.......+...+..-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33444677776665554443322 34444455667777777765433 3333333 233333333333333344444
Q ss_pred HHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 382 AAVK-VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 382 ~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
+-+. +.+.+.......+......-...|.+.|++++|.+...... +......=+..+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 44445444444444444444556889999999998887621 2344444455677888899999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 461 KAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
.+- -+..|.+.|..++.+ .+...+|.-+|++|.+ ...|+..+.+....++...|++++|..++++...+..+
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 863 366677777777654 4568889999999986 36788899999999999999999999999999988665
Q ss_pred CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhC
Q 007461 537 IDRAIAGIMVGVFSKLSQI-EELVKLLQDMKSE 568 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 568 (603)
++.+...++-+-...|+- +-..+.+..++..
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 666665555555555654 4445566666643
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=4.4e-05 Score=79.91 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=141.6
Q ss_pred HHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007461 88 HGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK 167 (603)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 167 (603)
.++..-+..++...+++.++.+. +....+-....+++.-.....+ ..+.+...+..|.....+.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g~ 101 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQARQV-------------LERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEAAHR 101 (694)
T ss_pred HHhcCcccchhHHHHHHHHHHHH-------------HHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcCC
Confidence 34445566666556666665531 1222222233333333333222 346678899999999999999
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
+++|..+++.+.+..|.+..++..+...+.+.+++++|+...++..+.... +......+..++.+.|++++|..+|+++
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987544 6667788889999999999999999999
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
...++.. ..++..+...+...|+.++|...|+...+.
T Consensus 181 ~~~~p~~----~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 181 SRQHPEF----ENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9855432 468999999999999999999999999765
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00084 Score=59.18 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=105.0
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007461 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 430 (603)
+.+.+.......+......-...|+..+++++|++..+... +......=...+.+..+++-|.+.++.|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444444443333333344455677777777777766621 22222233344556677778888888877653
Q ss_pred CcCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007461 431 DKCVVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS 506 (603)
Q Consensus 431 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 506 (603)
+..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|+.++++....... +..+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 44566666665554 45677788888888765 5778888888888888888888888888887765432 4555
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 007461 507 YTTVISAYNRAREF-DMCVKFYNEFRMN 533 (603)
Q Consensus 507 ~~~li~~~~~~g~~-~~a~~~~~~~~~~ 533 (603)
+..++-.-...|.. +...+.+.+++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 55555544445543 4445556666554
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=3.7e-05 Score=63.58 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=66.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..+++.....++.+...+..+...|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3445556666667777777777777766654 445666666666677777777777777777666666666666666677
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777666664
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.28 E-value=0.0078 Score=62.28 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007461 473 NSLMDMHGRAKNLR---QVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVF 549 (603)
Q Consensus 473 ~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
+.|++.+.+.++.. +|+-+++...... +-|..+-..+|+.|+-.|-+..|.++|+.+.-+.+..|..-|- +...+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 55566666666554 2333333333221 2234445566666666677777777776665555554444332 22334
Q ss_pred HccCCHHHHHHHHHHHHh
Q 007461 550 SKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 550 ~~~g~~~~A~~~~~~m~~ 567 (603)
...|++..+...++...+
T Consensus 518 ~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcccchhHHHHHHHHHH
Confidence 455666666666665543
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=3.9e-05 Score=63.79 Aligned_cols=97 Identities=10% Similarity=0.007 Sum_probs=69.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI 234 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 234 (603)
+..+...+...|++++|...|+......|.+..+|..+..++.+.|++++|...|++..+.+. .+...+..+..++.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 334556666777777777777777777777777777777777777777777777777776543 2666677777777777
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 007461 235 GDSEKVAALFLECKSRKL 252 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~ 252 (603)
|+.++|...|+......+
T Consensus 106 g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 777777777777666544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00051 Score=65.94 Aligned_cols=161 Identities=11% Similarity=0.076 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMH 479 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 479 (603)
-|..-+. +...|++++|+..++.+.+.. +.|+..+....+.+.+.++.++|.+.++++... .|+ ...+-.+..+|
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 3444443 446688889999998887763 667777788888888999999999999998875 565 55566677888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007461 480 GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559 (603)
Q Consensus 480 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 559 (603)
.+.|++.+|+.++++.... .+-|...|..|..+|...|+..++.....+. |...|++++|+
T Consensus 385 l~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~ 445 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAI 445 (484)
T ss_pred HhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHH
Confidence 8999999999999888764 3457788999999999999888877665543 55678888888
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007461 560 KLLQDMKSEG--TKLDERLYHSAMNAL 584 (603)
Q Consensus 560 ~~~~~m~~~g--~~~~~~~~~~ll~a~ 584 (603)
..+....+.. ..|+..-+...++..
T Consensus 446 ~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 446 IFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 8888887762 223333344444443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=5.5e-05 Score=62.53 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
....+...+...|++++|...++.+...++.+...|..+...+...|++++|...++...+.+ +.+...+..+...+..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555555555554443 1234444445555555
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 007461 234 IGDSEKVAALFLECKSRK 251 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~ 251 (603)
.|++++|...|+...+.+
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 555555555555554443
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0046 Score=54.27 Aligned_cols=186 Identities=11% Similarity=0.058 Sum_probs=123.4
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCh
Q 007461 342 EGLVEKTLDVVESMKNA---K-LKISDC-ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI-INAYCRIALY 415 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 415 (603)
..+.++..+++..+... + ..++.. .|..++-+....|+.+.|...++++...- |.+.-...+ ..-+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 45677777777776532 2 333332 24555666677788888888888877653 333222111 1223456788
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 416 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 495 (603)
++|.++++.+.+.+ +.|..++--=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888776 666677766666666677777888877777766 6678888888888888888888888888888
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 007461 496 ERRKVTPD-KVSYTTVISAYNRAR---EFDMCVKFYNEFRMN 533 (603)
Q Consensus 496 ~~~~~~p~-~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 533 (603)
+-. .|- ...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 743 343 344555555544333 566778888877775
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00014 Score=60.87 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=61.7
Q ss_pred cCChHHHHHHHHHHHhcCCcc---hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCCHHH
Q 007461 165 ARKFKIANTLLQVFITDGEIA---LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~ 239 (603)
.++...+...++.+....+.+ ..+.-.+...+...|++++|...|+.+......|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555566655554433 23333444555666666666666666665542221 1233345566666666666
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
|...++...... +....+....+.|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~-----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA-----FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc-----hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665432221 1234455566666666666666666654
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00013 Score=70.54 Aligned_cols=127 Identities=11% Similarity=-0.029 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..-..|+..+...++++.|+.+|+++.+..+ .....+++.+...++..+|++++++.++... -+...+..-...+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3344455556666777777777777766542 2344566666666777777777777665422 25555666666677
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+.++.+.|.++.+++....+.. -.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~----f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSE----FETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777777776554432 34677777777777777777777776653
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00036 Score=67.58 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=84.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007461 438 SSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517 (603)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 517 (603)
..|+..+...++++.|.++|+++.+. .|+. ...+++.+...++-.+|.+++++.++.. +-+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34445555677888888888888775 3543 3446677777777778888888777542 22455566666667778
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 518 REFDMCVKFYNEFRMNGGVI-DRAIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 518 g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
++++.|+.+.+++... .| +..+|..|..+|.+.|++++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888775 33 44578888888888888888888777664
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=7.1e-06 Score=49.18 Aligned_cols=33 Identities=48% Similarity=0.761 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILED 293 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 293 (603)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 588888888888888888888888888888887
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0067 Score=53.32 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=114.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 411 (603)
+-.++-+....|+.+.|...++++..+-+. +..+-..-..-+-..|++++|+++++.+.+.+ +.|.+++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 334455556667777777777776665422 22222222233455788888888888888776 5667777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcC---CHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGRAK---NLRQ 487 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g---~~~~ 487 (603)
.|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-. .| +...+..+...+...| +...
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 78878888888888776 5788999999999999999999999999999864 44 4445555555554444 5667
Q ss_pred HHHHHHHHHhC
Q 007461 488 VEKLWKEMERR 498 (603)
Q Consensus 488 a~~~~~~m~~~ 498 (603)
+.+.|.+.++.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 88888888855
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00045 Score=57.73 Aligned_cols=115 Identities=7% Similarity=0.054 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPN---VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK--VSYTTVISAYNRAREFD 521 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 521 (603)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. .....|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555431 111 111222334455555556666555555544311211 12333444555555666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 522 MCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 522 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
+|+..++..... ......+....++|.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 665555442221 12233444555555566666666555554
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.029 Score=58.34 Aligned_cols=488 Identities=12% Similarity=0.037 Sum_probs=267.7
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRY--LVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFK 169 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 169 (603)
..+++.. |+.....+.+.. |+. .|..++.+ +.+.|+.++|..+++.....+ ..|..|...+-..|.+.++.+
T Consensus 21 d~~qfkk-al~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKK-ALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHH-HHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 3445544 888888777653 332 23333333 457888889998888776655 337888888888898999999
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC----------CHHH
Q 007461 170 IANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG----------DSEK 239 (603)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----------~~~~ 239 (603)
+|..+++.+.+..|. ..-...+..+|.+.+++.+-.+.--+|-+. ++-++..+=++++.+.... -..-
T Consensus 95 ~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999998887665 777777788888887776544443333332 2224444444555444321 1233
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFF-RDMKEKGILEDPSIYASLICSFASITEVKLAEELFK 318 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 318 (603)
|.+.++.+.+.+. .-. +..-...-...+...|++++|++++ ....+.-..-+...-+.-+..+...+++.+..++..
T Consensus 173 A~~m~~~~l~~~g-k~~-s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 173 AEKMVQKLLEKKG-KIE-SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHhccCC-ccc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 5555666655541 111 1111222233445567788888888 333333222344444556666777788888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHH----------------HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hcCC
Q 007461 319 EAEEKGMLRDPEVCLKLVLMY----------------IEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS---KRRG 379 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~----------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~ 379 (603)
++...|.. | |...++.+ ...+..+...+...+...... ...|-+-+.... .-|+
T Consensus 251 ~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 251 RLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCC
Confidence 87777632 2 22222211 112222332222222222111 111222222222 2355
Q ss_pred HHHHHHHH------------------------------HHHHHcCCCCCHH-------HHHHHHHHHHhcCC-----hHH
Q 007461 380 YWAAVKVY------------------------------EQLISQGCIPGQV-------TYASIINAYCRIAL-----YSK 417 (603)
Q Consensus 380 ~~~a~~~~------------------------------~~m~~~g~~p~~~-------~~~~ll~~~~~~g~-----~~~ 417 (603)
.++++..| ...... .++.. -+...+......|. .+.
T Consensus 324 ~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 324 SEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 55544332 221111 11111 01122222222232 233
Q ss_pred HHHHHHHHH---HcCC------CcCHh---------hHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 418 AEKVFIEMQ---QKGF------DKCVV---------AYSSMVAMYGKTGRIR---DAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 418 a~~~~~~~~---~~~~------~~~~~---------~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
-..++.+.. +.|. -|+.. +-+.|++.+-+.++.. +|+-+++..... -+.|..+--.+|
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHH
Confidence 334443332 2231 12222 3456778888888766 455555555543 133445556778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 007461 477 DMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIE 556 (603)
Q Consensus 477 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
+.|.-.|-+..|.++|+.+--..++.|...|.. ..-+...|++..+...++...+---..-..+-. +|..-.+.|.+.
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~yS 558 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYS 558 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchh
Confidence 999999999999999999966667777665533 345567789999999998776532111122323 333334667777
Q ss_pred HHHHHH---HHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 557 ELVKLL---QDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 557 ~A~~~~---~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
+..++. +++...-..--..+=+..++.+...+..++-...++.++
T Consensus 559 kI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 559 KIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 666554 334332222333445566777788899888888888765
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1e-05 Score=48.49 Aligned_cols=31 Identities=32% Similarity=0.635 Sum_probs=13.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 467 (603)
|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444444
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.1e-05 Score=47.90 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILE 292 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 292 (603)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 367777777777777777777777777777766
No 146
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=0.011 Score=59.21 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=58.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIY-NVL--------PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI 184 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (603)
.|.+..|..+.......-.++.|...|-+.... |+. .+...-.+=+.+| -|++++|++++-.+.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 577888888887777666777777766655432 111 0111111222222 36777777776655443
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI--VLDSGCYCQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~ 244 (603)
...+..+.+.|++-+..++++.-- .+. ..-...++.+.+.++....+++|.+.|
T Consensus 764 -----DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 764 -----DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred -----hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555555555443210 000 001124444555555444555554444
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.5e-05 Score=47.36 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=14.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 007461 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467 (603)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 467 (603)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.0089 Score=59.96 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc-hhhHHH-----H--HhhhhhcCcHHHHHHHHHHHHhCCCCCC
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAFNS-----A--MGGYNKLHMYYSTILVYEKMKSAGIVLD 220 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-----l--~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 220 (603)
.|.+..|..+.......-.++.|+..|-+........ +.-... + ...-.--|++++|.+++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 5788888887776665556666666655543322110 000000 0 111122467777777776665543
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007461 221 SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASL 300 (603)
Q Consensus 221 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (603)
.-+..+.+.||+-...++++.-.. -..+..-..+|+.+...+.....+++|.+.|..-... ...
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~--d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGS--DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 235566677777776666643111 1111112346777777777777777777776543211 123
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 007461 301 ICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY 380 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 380 (603)
+.++.+..++++-+.+... ++-+....-.+.+++.+.|.-++|.+.|-+... | ..-+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence 4444444444443333322 233555666777778888887777766544321 1 1345666777777
Q ss_pred HHHHHHHHHH
Q 007461 381 WAAVKVYEQL 390 (603)
Q Consensus 381 ~~a~~~~~~m 390 (603)
.+|+++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7777766553
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.89 E-value=0.00028 Score=68.62 Aligned_cols=122 Identities=10% Similarity=-0.011 Sum_probs=75.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 007461 361 KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ--GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS 438 (603)
Q Consensus 361 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (603)
+.+......+++.+....+.+++..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555666666666666666666666666553 111222344566777777777777777776666667777777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA 482 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 482 (603)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777766666655555555555555555444
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00041 Score=52.86 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
..+...+...|++++|..+++...+.. +.+...+..+...+...++++.|.+.++......+.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 334444455555555555555554432 2223444444444444555555555555544444444444444444444444
Q ss_pred cHHHHHHHHHHHH
Q 007461 201 MYYSTILVYEKMK 213 (603)
Q Consensus 201 ~~~~a~~~~~~m~ 213 (603)
++++|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.0006 Score=66.39 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 007461 291 LEDPSIYASLICSFASITEVKLAEELFKEAEEKG--MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISC 368 (603)
Q Consensus 291 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (603)
......+..+++.+....+++.+..++-...... ...-+.+..++|+.|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3345555666666666666666666666665542 22223444567777777777777777776666667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 412 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 412 (603)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777776666665555666666666665554
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00056 Score=52.04 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=47.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
.+...+...|++++|...++.+.+..+.+..++..+...+...+++++|.+.++...+.... +..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 34444455556666666666555554444455555555555555555555555555543221 23344455555555555
Q ss_pred HHHHHHHHHHHH
Q 007461 237 SEKVAALFLECK 248 (603)
Q Consensus 237 ~~~a~~~~~~~~ 248 (603)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00078 Score=51.06 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=33.2
Q ss_pred HccCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 445 GKTGRIRDAMWLVAKMKAKGC-EPNVWIYNSLMDMHGRA--------KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYN 515 (603)
Q Consensus 445 ~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 515 (603)
...|++.....+|+.++..|+ .|++.+|+.++.+.++. ++....+.+|+.|+..+++|+..+|+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 333444444444444444444 44444444444443322 122334445555555555555555555555443
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.9e-05 Score=43.57 Aligned_cols=29 Identities=38% Similarity=0.602 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKG 289 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 289 (603)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46777777777777777777777776655
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.66 E-value=0.0017 Score=52.13 Aligned_cols=97 Identities=7% Similarity=-0.077 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHH
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVL--PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAM 193 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 193 (603)
++..++..+.+.|++++|...++.+...... .....+..+...+.+.|+++.|...++.+....+. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455555666666666666666666554310 01234444555566666666666666666554332 234455555
Q ss_pred hhhhhcCcHHHHHHHHHHHHhC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
..+...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555666666666666665554
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.00087 Score=50.79 Aligned_cols=78 Identities=15% Similarity=0.304 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 510 VISAYNRAREFDMCVKFYNEFRMNGG-VIDRAIAGIMVGVFSKLS--------QIEELVKLLQDMKSEGTKLDERLYHSA 580 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~l 580 (603)
.|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+++.|+..+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777777 567777777666665432 234567777888887888888888888
Q ss_pred HHHHHhc
Q 007461 581 MNALRDA 587 (603)
Q Consensus 581 l~a~~~~ 587 (603)
+.++.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 8777653
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=7e-05 Score=43.24 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=13.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAK 463 (603)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 463 (603)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.001 Score=62.30 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=65.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh-cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK-LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
+|..+++.+.+.+..+.|+.+|.+....+..+..+|-.....-.. .++.+.|..+|+...+. +..+...|..-++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 455555555555555555556555554433333444333333222 34444466666655543 3334555555556666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+.|+.+.|+.+|++....- .........|...++.=.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSL-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTS-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666555431 11100223566666666666666666666666554
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0034 Score=54.25 Aligned_cols=91 Identities=9% Similarity=-0.121 Sum_probs=70.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD--AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344577788888889999999999998886542222 357777888888999999999999998888777777888888
Q ss_pred hhhhhcCcHHHHH
Q 007461 194 GGYNKLHMYYSTI 206 (603)
Q Consensus 194 ~~~~~~~~~~~a~ 206 (603)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 8887777654443
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.0017 Score=63.20 Aligned_cols=91 Identities=14% Similarity=0.013 Sum_probs=64.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
...+...|++++|+.+|+++++.+ +.+...|..+..+|...|++++|+..++.+....+.+..+|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 445556677777777777777665 4456666666677777777777777777777776667777777777777777777
Q ss_pred HHHHHHHHHHhC
Q 007461 204 STILVYEKMKSA 215 (603)
Q Consensus 204 ~a~~~~~~m~~~ 215 (603)
+|+..|++.++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.60 E-value=0.051 Score=49.65 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=25.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 336 VLMYIEEGLVEKTLDVVESMKNA--KLKISDCISCAIVNGFSKRRGYWAAVKVYEQL 390 (603)
Q Consensus 336 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (603)
...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34445555555555555554433 11222233444555555555555555544443
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.60 E-value=0.0083 Score=50.00 Aligned_cols=101 Identities=9% Similarity=-0.009 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC-CChhhHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV-LDSGCYCQI 227 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l 227 (603)
|+..-.-.|..++.+.|+..+|...|++.....- .|......+.++....+++..|...++.+.+.... -++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444444444444555555555444443222 34444444444444455555555555544443210 011233344
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 007461 228 MEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
.+.+...|..+.|+.-|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 44555555555555555554443
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0015 Score=56.22 Aligned_cols=82 Identities=7% Similarity=-0.137 Sum_probs=61.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLP--DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
....|..+...+...|++++|+..++........+ ...++..+...+...|++++|+..++......+....+++.+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35567777788888899999999999887654222 2347777888888889999999888888877666666666666
Q ss_pred hhhh
Q 007461 194 GGYN 197 (603)
Q Consensus 194 ~~~~ 197 (603)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 6666
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.002 Score=51.63 Aligned_cols=97 Identities=19% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSAGIV--LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS 268 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 268 (603)
.++..+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|+++.|...|+.+....+... ....++..+...
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHH
Confidence 3333444444444444444444432110 0112333344444555555555555554443322110 011234444445
Q ss_pred HhccCCHHHHHHHHHHHHHC
Q 007461 269 LGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 269 ~~~~g~~~~A~~~~~~m~~~ 288 (603)
+.+.|++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555444
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.57 E-value=0.0024 Score=52.47 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=58.4
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA 241 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 241 (603)
+...|++++|.++|+.+...++.+..-|..|...+-..|++++|+..|......++. |+..+-.+..++...|+.+.|+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHHH
Confidence 445667777777777766666666666667777777777777777777766665542 5666666667777777777777
Q ss_pred HHHHHHHhC
Q 007461 242 ALFLECKSR 250 (603)
Q Consensus 242 ~~~~~~~~~ 250 (603)
+-|+.....
T Consensus 124 ~aF~~Ai~~ 132 (157)
T PRK15363 124 KALKAVVRI 132 (157)
T ss_pred HHHHHHHHH
Confidence 766655443
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00015 Score=53.93 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHH
Q 007461 518 REFDMCVKFYNEFRMNGGV-IDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE-RLYHSAMNALRDAGLQMQAQW 595 (603)
Q Consensus 518 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~a~~~~g~~~~a~~ 595 (603)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|++++++ .+ ..++. .....+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555554331 1233333355555555555555555555 11 11221 223333445555555555555
Q ss_pred HHhh
Q 007461 596 LQQN 599 (603)
Q Consensus 596 ~~~~ 599 (603)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0025 Score=59.75 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 007461 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINA-YCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 443 (603)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (603)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777777777777888888888877443 2223333333333 23346666688888877765 46667777777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 444 YGKTGRIRDAMWLVAKMKAKGCEPNV---WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514 (603)
Q Consensus 444 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 514 (603)
+.+.|+.+.|..+|++.... +.++. ..|...+.--.+.|+.+.+.++.+++.+. -|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 77888888888888877765 22222 47777777777778888888877777753 34433444444333
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.057 Score=50.88 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 266 CDSLGKS-GRAFEALKFFRDMKEK----GILED--PSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 266 i~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
...|... |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++..
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444 5555555555554321 1 110 12233444444555555555555555544
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.52 E-value=0.003 Score=54.38 Aligned_cols=87 Identities=20% Similarity=0.358 Sum_probs=50.1
Q ss_pred CHhhHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc----------------CCHHHHHHH
Q 007461 433 CVVAYSSMVAMYGK-----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA----------------KNLRQVEKL 491 (603)
Q Consensus 433 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~~~ 491 (603)
+..+|..+++.|.+ .|.++=....+..|.+-|+.-|..+|+.|++.+-+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 34444444444432 234444444444555555555555555555544331 234567788
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007461 492 WKEMERRKVTPDKVSYTTVISAYNRARE 519 (603)
Q Consensus 492 ~~~m~~~~~~p~~~~~~~li~~~~~~g~ 519 (603)
+++|...|+-||..++..++..+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888766543
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.49 E-value=0.0022 Score=52.59 Aligned_cols=98 Identities=16% Similarity=0.010 Sum_probs=85.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
....-.+...+...|++++|.++|+.+...+ +-+..-|-.|...+-..|++++|+..|......++.++..+-.+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455667777889999999999999998876 456667777888888899999999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987764
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0089 Score=54.36 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 007461 173 TLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG---DSEKVAALFLECKS 249 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~ 249 (603)
.-++.-...+|.|...|-.|...|...|+++.|..-|.+..+.. .+|+..+..+..++.... +..++..+|+++..
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 33444455677788888888888888888888888888887753 235666666666655443 45677888888877
Q ss_pred CCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007461 250 RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLIC 302 (603)
Q Consensus 250 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (603)
.++. ++.+...|...+...|++.+|...|+.|.+. -|....+..+|.
T Consensus 222 ~D~~----~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 222 LDPA----NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred cCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 6654 4567777888888888888888888888876 333333444444
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.45 E-value=0.0063 Score=52.56 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=54.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 007461 434 VVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN--VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP-DKVSYTTV 510 (603)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l 510 (603)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 44566666667777777777777777765422221 345666666777777777777777777653 23 33445555
Q ss_pred HHHHHhcCCHHHHH
Q 007461 511 ISAYNRAREFDMCV 524 (603)
Q Consensus 511 i~~~~~~g~~~~a~ 524 (603)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 56666666544444
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.069 Score=50.33 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=57.1
Q ss_pred HHHhc-CChHHHHHHHHHHHHc----CC-CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----CHh-HHHHH
Q 007461 408 AYCRI-ALYSKAEKVFIEMQQK----GF-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP-----NVW-IYNSL 475 (603)
Q Consensus 408 ~~~~~-g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~l 475 (603)
.|... |++++|.+.|++..+. +- ..-..++..+...+.+.|++++|.++|++........ +.. .|-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5566666665554332 10 0113345556666777777777777777766532211 111 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 007461 476 MDMHGRAKNLRQVEKLWKEMERRK--VTPD--KVSYTTVISAYNRA--REFDMCVKFYNEF 530 (603)
Q Consensus 476 i~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~li~~~~~~--g~~~~a~~~~~~~ 530 (603)
+-++...||+..|.+.+++..... +... ......|+.+|-.. ..++.++.-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 334455667777777777765331 1111 12345555555432 2344444444443
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.002 Score=58.14 Aligned_cols=94 Identities=16% Similarity=0.046 Sum_probs=52.4
Q ss_pred hcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 007461 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKI 170 (603)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 170 (603)
.+.+++.+ |++.|..+++.. +-|+..|..-..+|.+.|.++.|++=.+..+..+ +....+|..|..+|...|++++
T Consensus 92 m~~~~Y~e-Av~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQE-AVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHH-HHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 34444444 666666666542 3344555556666666666666666666555544 3334566666666666666666
Q ss_pred HHHHHHHHHhcCCcchhh
Q 007461 171 ANTLLQVFITDGEIALLA 188 (603)
Q Consensus 171 a~~~~~~~~~~~~~~~~~ 188 (603)
|++.|++.+..+|.+...
T Consensus 168 A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHhhhccCCCcHHH
Confidence 666666666555544433
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.38 E-value=0.00044 Score=51.37 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHhcCCc--chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007461 166 RKFKIANTLLQVFITDGEI--ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 243 (603)
|+++.|+.+++++....+. +...+..+..+|.+.|++++|+.+++. .+.+.. +......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444443331 223333344444444555555444444 111110 112222334445555555555555
Q ss_pred HH
Q 007461 244 FL 245 (603)
Q Consensus 244 ~~ 245 (603)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.35 E-value=0.073 Score=53.29 Aligned_cols=55 Identities=4% Similarity=-0.023 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
..+...+..-+.+...+..|.++|..|-+. ..++......++|.+|..+-+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 334444444455666777777777777421 2456666777888888877766543
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.077 Score=48.50 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=26.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAK--GCEPNVWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344455555555555555555543 1122233344444555555555555544443
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.16 Score=48.36 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 514 (603)
.+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++-.++... . -.+..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 345555667778899888888877764 58999999999999999999988876543 1 1347788999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 515 NRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 515 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
.+.|+..+|..+..++ . +..-+..|.++|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888772 1 244677788999999998775444
No 179
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.32 E-value=0.0043 Score=60.49 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=85.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 007461 87 LHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR 166 (603)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 166 (603)
...+...+++.+ |+++|+.+++.. +.+...|..+..+|.+.|++++|+..++.+.... +.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~-Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFAL-AVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 344556777766 999999999864 5567789999999999999999999999999886 557788999999999999
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHH
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSA 192 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l 192 (603)
++++|+..|+......+.+......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999887666655544
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0058 Score=52.57 Aligned_cols=93 Identities=9% Similarity=-0.008 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007461 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD--KVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547 (603)
Q Consensus 470 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..+++....... ....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 3344445555555666666666666553321111 134555666666666666666666666553211 2233444444
Q ss_pred HHH-------ccCCHHHHHHHHH
Q 007461 548 VFS-------KLSQIEELVKLLQ 563 (603)
Q Consensus 548 ~~~-------~~g~~~~A~~~~~ 563 (603)
.+. +.|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 5666664444444
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.27 E-value=0.071 Score=53.36 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 246 (603)
+.+.-+++++++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 44445677888888787653 45667778888888888864
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0042 Score=56.08 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=54.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHH
Q 007461 127 LVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTI 206 (603)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 206 (603)
+.+.+++.+|+..|...++.. +.|..-|.--..+|.+.|.++.|++-.+..+..++.-..+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 444556666666666665554 3444555555555666666666666666655555555556666666666666666666
Q ss_pred HHHHHHHhCCCCCChhhHH
Q 007461 207 LVYEKMKSAGIVLDSGCYC 225 (603)
Q Consensus 207 ~~~~~m~~~~~~p~~~~~~ 225 (603)
+.|.+.++ +.|+-.+|-
T Consensus 170 ~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHhhhc--cCCCcHHHH
Confidence 66555554 344444433
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.031 Score=57.14 Aligned_cols=136 Identities=9% Similarity=-0.049 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc--------CCHHHHHHHHHHHHH
Q 007461 396 IPGQVTYASIINAYCRI-----ALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT--------GRIRDAMWLVAKMKA 462 (603)
Q Consensus 396 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~ 462 (603)
+.+...|...+.+.... +..++|..+|++..+.. +-....|..+..++... ++...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44555565555554322 12445666666666553 22233333332222211 112233333333222
Q ss_pred c-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 463 K-GCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 463 ~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
. ....+...|..+.-.....|++++|...+++.++. .|+...|..+...+...|+.++|.+.+++....+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 12233455555555555566666666666666643 3555666666666666666666666666666543
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0098 Score=51.36 Aligned_cols=89 Identities=13% Similarity=0.309 Sum_probs=73.8
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHH
Q 007461 466 EPNVWIYNSLMDMHGR-----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA----------------REFDMCV 524 (603)
Q Consensus 466 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~ 524 (603)
..|..+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577888888888765 467777888899999999999999999999986432 2456789
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007461 525 KFYNEFRMNGGVIDRAIAGIMVGVFSKLSQ 554 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
+++++|...|+-||..++..+++.|.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999977665
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.19 E-value=0.023 Score=57.96 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
..|..+.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.++++...+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45555555555566666666666666665 3456666666666666666666666666666554
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.025 Score=51.52 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=60.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhcCCcchhhHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR---KFKIANTLLQVFITDGEIALLAFN 190 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 190 (603)
+-|...|-.|...|...|+++.|..-|....+.. +++...+..+..++.... +..++..+|+++...++.++.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3456666666666666666666666666666553 445555555555543321 234566666666666666666666
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.|...+...|++.+|...++.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666666666666666666654
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.17 E-value=0.018 Score=45.65 Aligned_cols=106 Identities=8% Similarity=-0.078 Sum_probs=64.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhh
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPD--AHTCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYN 197 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 197 (603)
+..++-..|+.++|+.+|+.....|.... ...+..+...+...|++++|..+|+......|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667788888888888777764443 235555666677778888888887777665432 3333333444566
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..|+.++|++.+-..... +...|..-|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 677777777766554432 2224444444443
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.11 Score=43.53 Aligned_cols=130 Identities=8% Similarity=0.009 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHhHH
Q 007461 396 IPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG---CEPNVWIY 472 (603)
Q Consensus 396 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~ 472 (603)
.|+...-..+..++.+.|+..+|...|.+...--+..|......+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555666777777777777777777776655455666677777777777777777777777776641 1222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 473 NSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 473 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
-.+.+.+...|...+|+..|+..... .|+...-......+.+.|+.+++..-+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34456667777777777777777643 44544433334445556655555444433
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.17 E-value=0.0016 Score=45.99 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 166 RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
|++++|.+.|+.+....|.+..++..+..+|.+.|++++|.++++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444433
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.031 Score=44.28 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=56.2
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSL 269 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 269 (603)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.....+.. +.+......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-ELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHH
Confidence 34455666777777777777777665533 2345556667777777777777777766543321 11122333344566
Q ss_pred hccCCHHHHHHHHHHHH
Q 007461 270 GKSGRAFEALKFFRDMK 286 (603)
Q Consensus 270 ~~~g~~~~A~~~~~~m~ 286 (603)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66777777777665544
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.14 E-value=0.0025 Score=44.53 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=27.9
Q ss_pred HHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 161 SCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
.+.+.|++++|+..|+.+.+..|.+..+|..+..++...|++++|...|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555544
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.18 Score=44.83 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE-----VCLKLV 336 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~ 336 (603)
.+.++..+.-.|.+.-.+.++++.++...+.++.....+.+...+.||.+.|...++.+.+..-..|.. +.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445555666666666666666666665444455555666666666666666666666555432222222 222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
..|.-.+++..|...++++...+.. +...-|.-.-+..-.|+..+|++.++.|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344445555555555555544432 222222222223334455555555555544
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.07 E-value=0.18 Score=44.80 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHH
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNV----WIYNSLMDMHGRAKNLR 486 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 486 (603)
+.+.|.+.|.+..|..-++.+.+. -|+. .....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 445556666666666666666554 2322 22344455555555554
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.0014 Score=46.26 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=32.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007461 128 VQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA 185 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (603)
.+.|++++|+++|+.+.... +.+...+..+..+|.+.|++++|..+++.+....+.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34566666666666665554 3355555556666666666666666666665554443
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0021 Score=44.84 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
+...+.+.|++++|+..|+.+.+.. +-+...+..+..++...|++++|...|+.+.+..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3445566666666666666666554 33455666666666666666666666666655444
No 196
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.07 E-value=0.32 Score=46.94 Aligned_cols=439 Identities=12% Similarity=0.077 Sum_probs=219.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh--hh
Q 007461 127 LVQSKKWDSIVSLSEDFKIYNVLPD------AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY--NK 198 (603)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 198 (603)
+-+.+++.+|..+|.+..+.. ..+ ....+.++++|.. ++.+.....+....+..+ ...|-.+..++ -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 345788888888888876542 222 2234556666654 456666666666655444 34444444443 36
Q ss_pred cCcHHHHHHHHHHHHhC--CCCC---Chh---------hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCccHHHHH
Q 007461 199 LHMYYSTILVYEKMKSA--GIVL---DSG---------CYCQIMEAYYKIGDSEKVAALFLECKSRKLD-STPFSTHMYK 263 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~--~~~p---~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 263 (603)
.+.+.+|++.+..-.+. +..| |.. .-+..++.+...|++.+++.+++++..+-.. ....+..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67788888777665543 2221 111 1134556677778888888888888776543 1223556777
Q ss_pred HHHHHHhccC--------C-------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHH
Q 007461 264 ILCDSLGKSG--------R-------AFEALKFFRDMKEK------GILEDPSIYASLICSFASI--TEVKLAEELFKEA 320 (603)
Q Consensus 264 ~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~ 320 (603)
.++-.+.+.= . ++-++-..++|... .+.|....+..++....-. ....--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 6554443321 1 11111111222111 1222222222222222111 1112222222222
Q ss_pred HHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007461 321 EEKGMLRDPE-VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKI----SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC 395 (603)
Q Consensus 321 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 395 (603)
...-+.|+-. +...+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|-+.+.-+....
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld- 328 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD- 328 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-
Confidence 2222333322 23334444443 4555555555444332111 11235556666666677777776666665532
Q ss_pred CCCHHHHH-------HHHHHHH-h---cCChHHHHHHHHHHHHcCCCcC--HhhHHHHHHHHHccCC-HHHHHHHHHHHH
Q 007461 396 IPGQVTYA-------SIINAYC-R---IALYSKAEKVFIEMQQKGFDKC--VVAYSSMVAMYGKTGR-IRDAMWLVAKMK 461 (603)
Q Consensus 396 ~p~~~~~~-------~ll~~~~-~---~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 461 (603)
|+...-. .+-+..+ . .-+...-..+++.....++..- ++..-.-..-+-+.|. -++|+++++.+.
T Consensus 329 -p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 329 -PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred -CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3322111 1111111 1 1112223334444443332111 1111122233445555 778888888887
Q ss_pred HcCCCCCHhHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHH--HHhcCCHHHHHHHHH
Q 007461 462 AKGCEPNVWIYNSLM----DMHGR---AKNLRQVEKLWKEMERRKVTPDKVS----YTTVISA--YNRAREFDMCVKFYN 528 (603)
Q Consensus 462 ~~~~~p~~~~~~~li----~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~----~~~li~~--~~~~g~~~~a~~~~~ 528 (603)
+- -.-|...-|.+. ..|.. ...+.+-.++-+-+.+.|+.|-.+. -|.|.+| +...|++.++.-.-.
T Consensus 408 ~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 408 QF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred Hh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 64 122333322222 22322 2344555555566667787764432 3444333 446788888877666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 529 EFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581 (603)
Q Consensus 529 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 581 (603)
-+.+ +.|.+.+|..++-++....++++|.+.+..+ +|+..++++=+
T Consensus 487 WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 487 WLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 5555 5788889998888888889999999988766 46666665433
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.05 E-value=0.0033 Score=44.54 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC-cHHHHHHHHHHHHh
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH-MYYSTILVYEKMKS 214 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~ 214 (603)
.+|..+...+...|++++|+..|++..+.++.+..+|..+..+|...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444444455555555555554444444445555555555554 45555555544443
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.49 Score=48.66 Aligned_cols=330 Identities=13% Similarity=0.102 Sum_probs=182.4
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG---DSEKVAALFLECKSRKLDSTPFSTHMYKILC 266 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li 266 (603)
..++.-+...+.+..|+++-..+...-..- ..+|.....-+.+.. +-+.+..+-+++... ..+ ..+|..+.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~----~iSy~~iA 514 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTP----GISYAAIA 514 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCC----ceeHHHHH
Confidence 345666777788888888877664432221 456666666666553 233333343444332 122 24688888
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKGIL----EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE 342 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (603)
.--...|+++-|..+++.=...+.+ .+..-+...+.-+...|+.+....++-.+...- +...+. .-.
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~------~~l 585 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLF------MTL 585 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHH------HHH
Confidence 8888899999888887543222111 012223334444455555555555555444321 111111 111
Q ss_pred CCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--HHH----HcCCCCCHHHHHHHHHHHHhcCCh
Q 007461 343 GLVEKTLDVVESMKN-AKLKISDCISCAIVNGFSKRRGYWAAVKVYE--QLI----SQGCIPGQVTYASIINAYCRIALY 415 (603)
Q Consensus 343 g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~m~----~~g~~p~~~~~~~ll~~~~~~g~~ 415 (603)
.+...|..+|.+... .+-. -+..+...++..+++.-|. ... ..|..|+. ....++|.+....
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~--------~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRA--------TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEK 654 (829)
T ss_pred HhchhhhHHHHHHHHhhchh--------hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhh
Confidence 222334444444332 2111 0111222222222222211 100 11222332 2233344443331
Q ss_pred ----------HHHHHHHHHHHH-cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 007461 416 ----------SKAEKVFIEMQQ-KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484 (603)
Q Consensus 416 ----------~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 484 (603)
.+-+++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..++
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhh
Confidence 112222333322 2333334455566667778899999999988876 6899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 485 LRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
+++-+++-+.+. .+..|.-...+|.+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--+
T Consensus 731 weeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 731 WEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 998887776654 2456778899999999999999998765331 1467788999999998876433
No 199
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.04 E-value=0.43 Score=47.92 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCCHHHHHHHHHHH
Q 007461 169 KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY-KIGDSEKVAALFLEC 247 (603)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~ 247 (603)
+.++.++..+...-|---.-|......-.+.|..+.+.++|++-+. |++-+...|...+..+. ..|+.+.....|+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3344444444433333333344444444455556666666666554 24444444444433332 345566666666555
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
.......- .+...|...|..-..++++.....+|++.++.
T Consensus 141 ~~~vG~dF-~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 141 KSYVGLDF-LSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhcccch-hccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43211110 01235666666666666666666666666653
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.02 E-value=0.0031 Score=44.68 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=40.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhc
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR-KFKIANTLLQVFITD 181 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~ 181 (603)
++..|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34556666666666666666666666666654 344556666666666666 566666666665544
No 201
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.34 Score=46.15 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=24.6
Q ss_pred HhcCChHHHHHHHHHHHHc---CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 410 CRIALYSKAEKVFIEMQQK---GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
.+.|++..|.+.|.+.+.. +..++...|........+.|+.++|+.--++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 3445555555555544432 223344444444444555555555555444444
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.032 Score=52.67 Aligned_cols=129 Identities=15% Similarity=0.032 Sum_probs=60.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----C-CCCCCHhh
Q 007461 297 YASLICSFASITEVKLAEELFKEAEEK----GM-LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN----A-KLKISDCI 366 (603)
Q Consensus 297 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~ 366 (603)
|..|.+.|.-.|+++.|...++.-++. |- ......+..+..+++-.|+++.|.+.|+.... . +-.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 334444444445555555544432221 11 11223444555555556666666555554221 1 11122334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLIS----Q-GCIPGQVTYASIINAYCRIALYSKAEKVFIEM 425 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 425 (603)
..+|.+.|.-..+++.|+.++.+-.. . ...-....+..+..++...|..++|..+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55556666666666666665544221 0 11122345556666666666666666555443
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.057 Score=47.97 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=24.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNV--LPDAHTCSRLVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
...+...|++.+|...|+.+..... +--..+.-.++.++.+.|+++.|...++.+....
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344445555555555555544321 0012233334444444455555555555444433
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.28 Score=43.72 Aligned_cols=133 Identities=10% Similarity=0.045 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-----
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM----- 476 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li----- 476 (603)
.+.++..+...|.+.-....+++..+...+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445556666667777777788888777656677777888888888888888888888766543333444443333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007461 477 DMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 477 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 535 (603)
..|.-.+++..|...+.+.....-. |....|.-.-+..-.|+..+|++.++.|+...+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3455567788888888877655322 333333333334445788888888888887643
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.82 E-value=0.53 Score=45.44 Aligned_cols=414 Identities=13% Similarity=0.119 Sum_probs=191.2
Q ss_pred HHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 102 DYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 102 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
++=++..+. +.|..+|-.|++.+...+..++..+++++|..- ++--..+|..-+++=....+++..+.+|.+....
T Consensus 30 rLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 444455443 456777888888888888888888888877532 2344567777776666667777777888777654
Q ss_pred CCcchhhHHHHHhhhhhcCcH------HHHHHHHHHHHh-CCCCCC-hhhHHHHHHHHH---------HcCCHHHHHHHH
Q 007461 182 GEIALLAFNSAMGGYNKLHMY------YSTILVYEKMKS-AGIVLD-SGCYCQIMEAYY---------KIGDSEKVAALF 244 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~-~~~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~ 244 (603)
..+...|...+.--.+.+.. ....+.|+-... .++.|- ...|+..+..+- .+.++|..++.+
T Consensus 106 -~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred -hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 33455565555544433321 111233333322 233332 223333332221 223445555556
Q ss_pred HHHHhCCCCCCCccHHHHHHH------HHH-----Hhc--cCCHHHHHHHHHHHHH--CCCCC----CHHHHHH------
Q 007461 245 LECKSRKLDSTPFSTHMYKIL------CDS-----LGK--SGRAFEALKFFRDMKE--KGILE----DPSIYAS------ 299 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l------i~~-----~~~--~g~~~~A~~~~~~m~~--~g~~p----~~~~~~~------ 299 (603)
.++.......- ...|+.. +.. +.. .--+..|...++++.. .|+.. +..+++.
T Consensus 185 ~ral~tP~~nl---eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 185 MRALQTPMGNL---EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHcCccccH---HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 55543322110 1122111 110 100 1123455566665532 23221 2222222
Q ss_pred -----HHHHHHcc-----CC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 007461 300 -----LICSFASI-----TE--VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS 367 (603)
Q Consensus 300 -----ll~~~~~~-----g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
.|.--... |+ .....-++++.... +...+.+|--.-..+...++-+.|+.....-....+ + ..
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp--s--L~ 336 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP--S--LT 336 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC--c--hh
Confidence 22111111 11 12222233333322 123444555444455566777777666554332221 1 00
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-------c-------CC---------------CCCHHHHHHHHHHHHhcCChHHH
Q 007461 368 CAIVNGFSKRRGYWAAVKVYEQLIS-------Q-------GC---------------IPGQVTYASIINAYCRIALYSKA 418 (603)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~-------~-------g~---------------~p~~~~~~~ll~~~~~~g~~~~a 418 (603)
-.+-..|.-.++-++....|+.... . +. .--...|...+++..+..-++.|
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 1111222222222222222222111 0 00 00112344455555555556666
Q ss_pred HHHHHHHHHcC-CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 419 EKVFIEMQQKG-FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIY-NSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 419 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
..+|-+..+.+ +.+++..+++++.-++ .|+..-|..+|+.-... -||...| +-.+.-+...++-+.|..+|+..+
T Consensus 417 R~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 417 RKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 66666666665 4556666666666544 35666666666655443 2333332 334444555666666666666443
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 497 RRKVTPD--KVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 497 ~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
+. +..+ ...|..+|.-=..-|++..+..+-+.+.+
T Consensus 494 ~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 494 ER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 31 2222 23456666655566666555555555544
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.78 E-value=0.015 Score=54.74 Aligned_cols=132 Identities=13% Similarity=0.013 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCCH
Q 007461 330 EVCLKLVLMYIEEGLVEKTLDVVESMK----NAKL-KISDCISCAIVNGFSKRRGYWAAVKVYEQLIS----QGC-IPGQ 399 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~ 399 (603)
..|..|...|.-.|+++.|+...+.-. +-|- ......+..+.+++.-.|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356667777777889998876654321 2121 12234577788889999999999998876432 221 1233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQQK-----GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
...-.+.+.|.-..++++|+.++.+-... ...-....|.+|..+|...|..++|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556777777777888888887654321 112346778889999999999999988876654
No 207
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.94 Score=47.36 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRL----VASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
.....-+..+.+-..++-|+.+.+.- + .|..+...+ .+-+.+.|++++|...+-+-...-.+ ..++
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-----s~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-----SEVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-----HHHH
Confidence 34555677777777788887776543 2 333333333 34455779999998776655432222 2345
Q ss_pred hhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 273 (603)
.-|....+...-..+++.+.+.|+. +..--..|+.+|.+.++.++..++.+......+.. -....+..+.+.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~f------d~e~al~Ilr~sn 477 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFF------DVETALEILRKSN 477 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceee------eHHHHHHHHHHhC
Confidence 5566666777777788888888876 55566788999999999999888877665221211 1445666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 274 RAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEA 320 (603)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 320 (603)
-.++|..+-..... .......++ -..+++++|.+.++.+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77776655443322 223333333 3567788888877654
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.039 Score=50.85 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=53.2
Q ss_pred hHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 007461 188 AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265 (603)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 265 (603)
.|...+..+.+.|++++|+..|+.+++...... ...+-.+...|...|++++|...|+.+....+.... ...++-.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~-~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK-AADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhHHHHHH
Confidence 344444444445666666666666655421110 134555666666666666666666666544332211 22345555
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC
Q 007461 266 CDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
...+...|+.++|.+.|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666666666654
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.70 E-value=0.49 Score=45.56 Aligned_cols=162 Identities=10% Similarity=0.040 Sum_probs=81.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC---CCcCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKG---FDKCVVAYSSMVAMYGK---TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 478 (603)
++-+|....+++...++.+.+.... +..+...-.....++.+ .|+.++|++++..+....-.++..+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555555666666655555431 11122222233444444 56666666666664444344555555555544
Q ss_pred HHh---------cCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcC-CHHHHHHHH----HHHHHCCCC---CC
Q 007461 479 HGR---------AKNLRQVEKLWKEMERRKVTPDKVS---YTTVISAYNRAR-EFDMCVKFY----NEFRMNGGV---ID 538 (603)
Q Consensus 479 ~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g-~~~~a~~~~----~~~~~~~~~---~~ 538 (603)
|-. ....++|...|.+.-+. .||..+ +..|+......- .-.+..++- ..+.++|.. .|
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 421 12366777777776533 355543 222322222110 111222222 122233322 33
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
-..+..++++..-.|+.++|.+..++|.+.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345567888888889999999999988865
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.70 E-value=0.6 Score=44.50 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 171 (603)
|..+...-...|+.+-|..+++ .+|...-- +-.+.+.|+.+.|
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~q---VplLL~m~e~e~A 45 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE------LEPRASKQ---VPLLLKMGEDELA 45 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH------cCCChHHH---HHHHhcCCchHHH
Confidence 4455555556666666665554 45554332 2233445555544
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.70 E-value=0.035 Score=51.12 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI--LEDPSIYASL 300 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l 300 (603)
.|...+..+.+.|++++|...|+.+....+.... ...++-.+...|...|++++|...|+.+.+.-. ......+..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4454444455668888888888888776654321 124667778888888888888888888876411 1123445555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC
Q 007461 301 ICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
...+...|+.+.|..+++.+.+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 566667888888888888877754
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.67 E-value=0.44 Score=45.85 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007461 225 CQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK---SGRAFEALKFFRDMKEKGILEDPSIYASLI 301 (603)
Q Consensus 225 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (603)
..++-.|....+++...++.+.+..............-...+-++-+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666777777777666554211111111222333444455 677777777777755554556666666666
Q ss_pred HHH
Q 007461 302 CSF 304 (603)
Q Consensus 302 ~~~ 304 (603)
+.|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 555
No 213
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.7 Score=44.17 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH--HhccCCHHHHHHHHHHHHHCCCCCCHHHHHH---HH--
Q 007461 229 EAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS--LGKSGRAFEALKFFRDMKEKGILEDPSIYAS---LI-- 301 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---ll-- 301 (603)
..+.-.|+.++|..+--.+...+... .+...+++ +.-.++.+.+...|++.+.. .||...-.. ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n------~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATN------AEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKK 248 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccch------hHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHH
Confidence 34455677777776665555544332 23333333 33356677777777776654 333322111 11
Q ss_pred --------HHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 302 --------CSFASITEVKLAEELFKEAEEKG---MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 302 --------~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
+-..+.|.+..|.+.+.+.+... ..++...|........+.|+.++|+.--+...+.
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 11234555666666666655432 2334445555555555566666665555554443
No 214
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=1.1 Score=46.98 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
..-...+.+.|++++|...|-+.+.. +.|. .++.-|....+......+++.+.+.+..+...-..|+.+|.+.+
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlk 445 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLK 445 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhc
Confidence 33445566789999999988776532 1232 34555666777778888899999988888888899999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
+.++-.+..+... .|.. ..-....+..+.+.+-.++|..+-....... ..+--.+-..+++++|++
T Consensus 446 d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~he-----------~vl~ille~~~ny~eAl~ 511 (933)
T KOG2114|consen 446 DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKKHE-----------WVLDILLEDLHNYEEALR 511 (933)
T ss_pred chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhccCH-----------HHHHHHHHHhcCHHHHHH
Confidence 9998877766544 2322 1124456677777777788777665443311 122233445688999999
Q ss_pred HHHHHH
Q 007461 281 FFRDMK 286 (603)
Q Consensus 281 ~~~~m~ 286 (603)
.+..|.
T Consensus 512 yi~slp 517 (933)
T KOG2114|consen 512 YISSLP 517 (933)
T ss_pred HHhcCC
Confidence 887764
No 215
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.57 E-value=0.79 Score=44.29 Aligned_cols=430 Identities=12% Similarity=0.073 Sum_probs=229.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC
Q 007461 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 217 (603)
++-+.+.+ + +.|..+|-.|+.-+...+..++.+++++++...-|--..+|..-+.+-...+++.....+|.+-+....
T Consensus 30 rLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 44444443 2 678899999999999999999999999999887777788999999999999999999999999887644
Q ss_pred CCChhhHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh---ccCC------HHHHHHHH
Q 007461 218 VLDSGCYCQIMEAYYKIGDS------EKVAALFLECKSRKLDSTPFSTHMYKILCDSLG---KSGR------AFEALKFF 282 (603)
Q Consensus 218 ~p~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~------~~~A~~~~ 282 (603)
. ...|..-++--.+.... -...+.|+-... ....++.+...|+..+..+- ..|. .+...+.|
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~-~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLG-CAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHh-cccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3 55676666644443311 111223332222 11111112235666554432 2343 44455566
Q ss_pred HHHHHCCCCC------CHHHHHHHHHHH-Hc------cCCHHHHHHHHHHHHHc--CCC----CCHHHHHH---------
Q 007461 283 RDMKEKGILE------DPSIYASLICSF-AS------ITEVKLAEELFKEAEEK--GML----RDPEVCLK--------- 334 (603)
Q Consensus 283 ~~m~~~g~~p------~~~~~~~ll~~~-~~------~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~--------- 334 (603)
.+|+...+.- |-..|..=++-. ++ .--+..|++.++++... |+. .+..+++.
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 6665432110 111111111111 11 11244566666655432 221 12223332
Q ss_pred --HHHHHHHcC-----C-HH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 335 --LVLMYIEEG-----L-VE-KTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI 405 (603)
Q Consensus 335 --l~~~~~~~g-----~-~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 405 (603)
.|..-...| + .. ...-++++....- .....+|--.-.-+...++-+.|+...+.-... .|. .+..
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~-~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~ 338 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYF-YYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMF 338 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hhee
Confidence 111111100 0 00 0111111111110 112223333333344556666666655443221 232 1111
Q ss_pred HHHHHh-cCChHHHHHHHHHHHH--------------cCC---------------CcCHhhHHHHHHHHHccCCHHHHHH
Q 007461 406 INAYCR-IALYSKAEKVFIEMQQ--------------KGF---------------DKCVVAYSSMVAMYGKTGRIRDAMW 455 (603)
Q Consensus 406 l~~~~~-~g~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~ 455 (603)
+.-|.. .++-+.....|+...+ .+. ..-..+|...+....+..-++.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 222211 1222222222221110 000 1113456667777777777888888
Q ss_pred HHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 456 LVAKMKAKG-CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS-YTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 456 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
+|-+..+.| +.+++.++++++..++. |+...|.++|+--... -||... -+-.+..+..-++-+.|..+|+..+.+
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 888888777 56788888888876654 5777788888764432 245443 344555566778888888888866543
Q ss_pred CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 534 GGVID--RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 534 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
+..+ ..+|..+|+--..-|+...+..+-++|.+. .|-..+......-|
T Consensus 496 -~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 496 -LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred -HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 2223 467888888778888888888888888754 45444444444433
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.49 E-value=0.019 Score=41.15 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=25.9
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
|.+.++++.|.++++.+...+|.+...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444445555555555555544444
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=1.3 Score=45.68 Aligned_cols=347 Identities=11% Similarity=0.030 Sum_probs=161.9
Q ss_pred HHhCCCCCCHHHHHH-----HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc--HHHHHHHHHHHHhC
Q 007461 143 FKIYNVLPDAHTCSR-----LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM--YYSTILVYEKMKSA 215 (603)
Q Consensus 143 ~~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~ 215 (603)
+...|++.+..-|.. +++.+...+.+..|+++-..+.........+|.....-+.+..+ -+++++..++=...
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 345566666555544 45556667778888887776644322234566666666665532 22333333322222
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 007461 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD-STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP 294 (603)
Q Consensus 216 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 294 (603)
-. -+...|..+..-....|+.+-|..+++.=...+.. +--.+..-+..-+.-..+.|+.+-...++..|..+- +.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 12 24456777777777888888888877643222110 000011224455666677777777777776665431 11
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 007461 295 SIYASLICSFASITEVKLAEELFKEAEEKG-MLRDPEVCL------KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS 367 (603)
Q Consensus 295 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
..|...+ .+.-.|..++.+..+.. ...-...|+ .+.....+.+ ..++.. .+..|+ .
T Consensus 579 s~l~~~l------~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~------~~~~~~--~~r~~~---l 641 (829)
T KOG2280|consen 579 SSLFMTL------RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQAS------YAAETI--EGRIPA---L 641 (829)
T ss_pred HHHHHHH------HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhh------hhhhhh--cccchh---H
Confidence 1111111 11122233333322210 000000000 0000000000 000000 000011 1
Q ss_pred HHHHHHHHhcCC----------HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhh
Q 007461 368 CAIVNGFSKRRG----------YWAAVKVYEQLIS-QGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVA 436 (603)
Q Consensus 368 ~~li~~~~~~~~----------~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (603)
....+.+.+... ..+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -|+...
T Consensus 642 k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~ 717 (829)
T KOG2280|consen 642 KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRL 717 (829)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchhh
Confidence 111122222111 1112222222222 1222333344555555666677777766655443 455666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 516 (603)
|-.-+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|.+.+.+.. |.. -...+|.+
T Consensus 718 ~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~ 782 (829)
T KOG2280|consen 718 WWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLR 782 (829)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHH
Confidence 6666777777777766655544433 24456666677777777777777766653 111 34556666
Q ss_pred cCCHHHHHHHHHH
Q 007461 517 AREFDMCVKFYNE 529 (603)
Q Consensus 517 ~g~~~~a~~~~~~ 529 (603)
.|++.+|.++--+
T Consensus 783 ~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 783 VGDVKEAADLAAE 795 (829)
T ss_pred hccHHHHHHHHHH
Confidence 7777766665443
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.44 E-value=0.024 Score=47.33 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=45.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh-----CCCCCChhh
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS-----AGIVLDSGC 223 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 223 (603)
+...++..+...|+++.|..+++.+...+|.+...|..+|.+|...|+...|++.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555666778888888888888887777888888888888888888888877776643 467776654
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.42 E-value=0.22 Score=48.66 Aligned_cols=66 Identities=6% Similarity=-0.034 Sum_probs=45.4
Q ss_pred CCCh-hchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 77 VPDA-KKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEK----STLKLLIRYLVQSKKWDSIVSLSEDFKIY 146 (603)
Q Consensus 77 ~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 146 (603)
.|+. ..++.+-..+...+++.+ |+..|+.+++. .|+. .+|..+..+|...|+.++|+..++...+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeE-AIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKD-ALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3443 336667777777777766 88888877765 3442 34777777888888888888888877764
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.40 E-value=0.92 Score=43.05 Aligned_cols=282 Identities=12% Similarity=0.019 Sum_probs=169.9
Q ss_pred cCChHHHHHHHHHHHhcCCcchhhHHHHHhh--hhhcCcHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHHcCCHHHH
Q 007461 165 ARKFKIANTLLQVFITDGEIALLAFNSAMGG--YNKLHMYYSTILVYEKMKSAGIVLDSGC--YCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a 240 (603)
.|+-..|+++-.+-...-..|....-.|+.+ -.-.|+++.|.+-|+.|... |.... ...|.-.--+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4566666665555433222344444444433 34567788888888888752 22111 22233334467888888
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHHc---cCCHHHHH
Q 007461 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-GILEDPS--IYASLICSFAS---ITEVKLAE 314 (603)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--~~~~ll~~~~~---~g~~~~a~ 314 (603)
...-+..-...+.. ...+...+...+..|+++.|+++++.-+.. -+.++.. .-..|+.+-+. ..+...|+
T Consensus 174 r~yAe~Aa~~Ap~l----~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 174 RHYAERAAEKAPQL----PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHhhccCC----chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 88877776655443 246888888888888888888888776543 2344432 22333333221 23556666
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007461 315 ELFKEAEEKGMLRDPE-VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ 393 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (603)
..-.+..+. .||.. ....-...+.+.|++.++-.+++.+=+..+.|+. ..+..+.+.|+ .++.-+++..+.
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCC--cHHHHHHHHHHH
Confidence 665555543 34422 2223456788899999999999998888877753 22233344444 333333332221
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc-cCCHHHHHHHHHHHHHc
Q 007461 394 -GCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK-TGRIRDAMWLVAKMKAK 463 (603)
Q Consensus 394 -g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 463 (603)
.++| +..+...+..+-...|++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1233 4456666777777888888887766666554 6777778777776554 48999999888887764
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.34 E-value=0.024 Score=40.59 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=33.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
..+.+.++++.|+++++.+...+ +.+...+......+.+.|++++|...|+.+.+..|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34555666666666666666554 34455555555556666666666666666655544
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.34 E-value=0.041 Score=45.60 Aligned_cols=85 Identities=7% Similarity=-0.101 Sum_probs=55.1
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 243 (603)
..|++++|..+|+-+...++.+..-|..|...+-..+++++|+..|......+.. |+..+-.....|...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHHH
Confidence 4567777777777666666666666666666666677777777776655544332 444455566667777777777777
Q ss_pred HHHHHh
Q 007461 244 FLECKS 249 (603)
Q Consensus 244 ~~~~~~ 249 (603)
|+....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 766655
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.28 E-value=0.062 Score=43.05 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH---------------HcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQ---------------QKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK- 463 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 463 (603)
.++..+|.++++.|+++....+++..= .....|+..+..+++.+|+..|++..|+++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555544443321 1123455555555555555555565555555555443
Q ss_pred CCCCCHhHHHHHHHHH
Q 007461 464 GCEPNVWIYNSLMDMH 479 (603)
Q Consensus 464 ~~~p~~~~~~~li~~~ 479 (603)
+++.+..+|..|+.-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444555555555443
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.23 E-value=0.057 Score=45.06 Aligned_cols=70 Identities=7% Similarity=0.134 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS-----EGTKLDERLY 577 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 577 (603)
...++..+...|++++|.++.+.+....+- |...|..+|.+|.+.|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 444555566667777777777776665332 556667777777777777777777665533 2666665543
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.18 E-value=0.47 Score=37.48 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 464 (603)
.+..+...|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444443322 3334444444444444444444444444444443
No 226
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.06 E-value=0.56 Score=38.69 Aligned_cols=124 Identities=10% Similarity=0.147 Sum_probs=57.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAR 518 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 518 (603)
.++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. .++......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444555555555555555543 244455555555555442 2222333221 112233344555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 519 EFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKL-SQIEELVKLLQDMKSEGTKLDERLYHSAMNALR 585 (603)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~ 585 (603)
.++++..++.++.. +...+..+... ++.+.|.+++++- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666666655422 11122222222 5566666655541 23445555555543
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.00 E-value=0.12 Score=41.31 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=53.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007461 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547 (603)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
|..++..+|.++++.|+.+....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44567777777777777777777776653 22221100 0000 0111223466666666666
Q ss_pred HHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 007461 548 VFSKLSQIEELVKLLQDMKSE-GTKLDERLYHSAMNAL 584 (603)
Q Consensus 548 ~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~a~ 584 (603)
+|+..|++..|+++++...+. +++.+..+|..|++-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 666666666666666665554 5555566666666543
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.98 E-value=0.021 Score=41.56 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 506 SYTTVISAYNRAREFDMCVKFYNEFRMN----GGV-ID-RAIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 506 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666666667777777777777666532 111 11 2355666667777777777777776654
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.92 E-value=0.64 Score=36.76 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 007461 506 SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT 570 (603)
Q Consensus 506 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 570 (603)
.+...+......|+-+.-.++++++.+ +-.+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555555555555555544 2334555555555566666666666666665555554
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.88 E-value=1.7 Score=41.37 Aligned_cols=287 Identities=11% Similarity=0.003 Sum_probs=160.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY--KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
.|+-..|.++-.+-.+. +..|..-...++.+-. -.|+.+.|.+-|+.|....-.. ..-...|.-.--+.|..+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtR----llGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETR----LLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHH----HHhHHHHHHHHHhcccHH
Confidence 45666666665544321 2334445555555433 3588888888888886532110 011222333334567777
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHH---HcCCHHHHH
Q 007461 277 EALKFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAEEKG-MLRDPEV--CLKLVLMYI---EEGLVEKTL 349 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~g~~~~a~ 349 (603)
.|...-++.-.. -|. .-.....+...+..|+++.|.++++.-.... +.++..- -..|+.+-. -.-+...|.
T Consensus 172 aAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 777777666554 332 3456777888888888888888887766543 2333221 112222111 112344455
Q ss_pred HHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 350 DVVESMKNAKLKISDC-ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
+.-.+..+.. |+-. .-..-..++.+.|+..++-.+++.+-+....|+.. .+-...+.|+ .+..-++...+.
T Consensus 250 ~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHH
Confidence 4444433322 2211 12334567788888888888888888775555432 1222334443 333333333221
Q ss_pred -CC-CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC
Q 007461 429 -GF-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA-KNLRQVEKLWKEMERRKVTP 502 (603)
Q Consensus 429 -~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p 502 (603)
.. +.+......+..+-...|++..|..--+.... ..|....|..|.+.-... |+-.++...+.+.++.--.|
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 11 33455666677777778888877776666655 367777787777765544 88888888888777653333
No 231
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.81 E-value=0.87 Score=37.54 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=16.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
++..+.+.+....+..+++.+...+ ..+...++.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 3333433444444444444444333 233333444444443
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.81 E-value=1.4 Score=39.71 Aligned_cols=58 Identities=21% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 227 IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 227 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
+.+.|.+.|.+..|..-+++|.+.- ..++......-.+..+|...|-.++|.+.-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3445555555555555555555542 112222234444445555555555554444333
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=95.73 E-value=0.15 Score=42.32 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (603)
...--+...|++++|..+|+-+...+ .-+..-|..|...+-..++++.|...|......+..|+..+-.....|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34555667999999999999998876 34555667777777788999999999999888878888888899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 007461 202 YYSTILVYEKMKSA 215 (603)
Q Consensus 202 ~~~a~~~~~~m~~~ 215 (603)
.+.|...|+...+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988873
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.58 E-value=0.38 Score=47.03 Aligned_cols=66 Identities=14% Similarity=0.001 Sum_probs=51.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD-A---HTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
+.+...++.+..+|.+.|++++|+..|+...+.+ |+ . .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5567788888999999999999999998888765 44 2 34777777788888888888887777663
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.56 E-value=0.04 Score=40.04 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECKSRK--LDSTPF-STHMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
+++.+...|...|++++|+..|++..... ..+..+ ...+++.+...+...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555555554443220 000111 1334555555555555555555555544
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.55 E-value=0.19 Score=45.20 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC----------------HHHHH
Q 007461 396 IPGQVTYASIINAYCR-----IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR----------------IRDAM 454 (603)
Q Consensus 396 ~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------~~~A~ 454 (603)
+-|..+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-|..- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3456666666666543 34556666667777788888888888888877655321 11244
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 007461 455 WLVAKMKAKGCEPNVWIYNSLMDMHGRAK 483 (603)
Q Consensus 455 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g 483 (603)
+++++|...|+.||..+-..|+.++++.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 55555555555555555555555555444
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.54 E-value=0.34 Score=48.44 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=83.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCH
Q 007461 372 NGFSKRRGYWAAVKVYEQLI-SQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 450 (603)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (603)
....-.++++++.++.+.-. -..+ +..-.+.++.-+-+.|..+.|+++-..-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 33445666666666664111 1111 13345666666667777777666543321 112334566777
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 451 RDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 451 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
+.|.++.++. ++...|..|.+...+.|+++-|++.|.+.. | |..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d---~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK------D---FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------C---ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7776655432 356677777777777777777777777653 1 345555566667776666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
...|- ++....++.-.|+.++..+++.+-
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55432 344444555567777777666543
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.45 E-value=0.14 Score=46.00 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=70.5
Q ss_pred CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------------hHHHHH
Q 007461 362 ISDCISCAIVNGFSKR-----RGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL----------------YSKAEK 420 (603)
Q Consensus 362 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------------~~~a~~ 420 (603)
-|-.+|-..+..+... +..+-.-..++.|.+-|+.-|..+|+.|++.+-+..- -+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 3555677777776543 4566666677888889999999999999988766431 234778
Q ss_pred HHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
++++|...|+.||..+-..|+++++ +..-...-+.+|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FG---r~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFG---RWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhc---cccccHHHHHHHH
Confidence 8899999999999998888888874 4556655555543
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.44 E-value=0.25 Score=49.40 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=96.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
....+.++..+-+.|..+.|+++..+-. .-.....+.|+++.|.++.++ ..+...|..|....
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHH
Confidence 5568888899999999999988765432 223445678899888876443 24677899999999
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
.+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+....++. +|....++...|+.+
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---------~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD---------INIAFQAALLLGDVE 419 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----------HHHHHHHHHHHT-HH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC---------HHHHHHHHHHcCCHH
Confidence 999999999999887543 66777788888998888888877776653 677777777788888
Q ss_pred HHHHHHHH
Q 007461 277 EALKFFRD 284 (603)
Q Consensus 277 ~A~~~~~~ 284 (603)
+..+++.+
T Consensus 420 ~cv~lL~~ 427 (443)
T PF04053_consen 420 ECVDLLIE 427 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.29 E-value=1.4 Score=44.79 Aligned_cols=162 Identities=9% Similarity=0.112 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCcC-----HhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHH
Q 007461 403 ASIINAYCRIALYSKAEKVFIEMQQKG-FDKC-----VVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIY 472 (603)
Q Consensus 403 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~ 472 (603)
..++....-.|+-+.+.+.+.+..+.+ +.-. .-.|..++..++- ....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 444555555566666666666554432 1111 1223333333332 34567777788777765 5665555
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH
Q 007461 473 NSLM-DMHGRAKNLRQVEKLWKEMERRK---VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIM-VG 547 (603)
Q Consensus 473 ~~li-~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~ 547 (603)
...- +.+...|++++|.+.|++..... .+.....+--+...+...++|++|.+.|..+.+..-- ...+|.-+ ..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHH
Confidence 4332 34556778888888887654311 1112234555556667777888888888887764322 33344322 22
Q ss_pred HHHccCCH-------HHHHHHHHHHHh
Q 007461 548 VFSKLSQI-------EELVKLLQDMKS 567 (603)
Q Consensus 548 ~~~~~g~~-------~~A~~~~~~m~~ 567 (603)
++...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44456666 777777766543
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.20 E-value=2 Score=42.35 Aligned_cols=112 Identities=9% Similarity=-0.084 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
..+|.++.+...+.++.|..+...+..+..-.++++.|..+|++....+.. ...+|......+.-.|+.++|.+.+++.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666666667777666666666666677777777776664322 3334444455555567777777777665
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFR 283 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (603)
.+.++... -.......++.|+..+ .++|+++|-
T Consensus 399 lrLsP~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 399 LQLEPRRR--KAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hccCchhh--HHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 44433221 1223333444555444 455555553
No 242
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.17 E-value=3.4 Score=40.26 Aligned_cols=433 Identities=9% Similarity=0.044 Sum_probs=228.0
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcc
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPE----KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS--CVRA 165 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~ 165 (603)
++++..+ |-++|.+.-+...-.|. ...-+.++++|... +.+.....+....+.. | ...|..+..+ +-+.
T Consensus 18 kq~~~~e-sEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQE-SEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhH-HHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHh
Confidence 4455544 77777666543211111 22344566776644 4555555555555442 3 2333344433 4467
Q ss_pred CChHHHHHHHHHHHhcCC----c--ch---------hhHHHHHhhhhhcCcHHHHHHHHHHHHhCC----CCCChhhHHH
Q 007461 166 RKFKIANTLLQVFITDGE----I--AL---------LAFNSAMGGYNKLHMYYSTILVYEKMKSAG----IVLDSGCYCQ 226 (603)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~----~--~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ 226 (603)
+.+..|.+.+......-. + +. .-=+..+..+...|++.+++.++++|...= ..-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 888888888776654411 1 11 222455677888999999999888887642 3367788888
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHhCCC------CCCCccHHHHHHHHHHHhcc--CCHHHHHHHHH
Q 007461 227 IMEAYYKIGD---------------SEKVAALFLECKSRKL------DSTPFSTHMYKILCDSLGKS--GRAFEALKFFR 283 (603)
Q Consensus 227 ll~~~~~~g~---------------~~~a~~~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 283 (603)
++-.+.+.=- ++.+.-..++|...+. .|. ......++....-. .+..--.+++.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pe---eeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPE---EELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcH---HHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 6666654311 1122222222222111 110 01111111111111 11112223333
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 284 DMKEKGILEDPS-IYASLICSFASITEVKLAEELFKEAEEKGMLR----DPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 284 ~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
.....-+.|+.. ....++..+.. +.+++..+-+.+....+.+ -..++..++....+.++...|...+.-+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333334555532 23334444433 5555555555444332111 2346777788888899999998888877765
Q ss_pred CCCCCHhh-----HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHH---HHHHhcCC-hHHHHHHHHH
Q 007461 359 KLKISDCI-----SCAIVNGFSK----RRGYWAAVKVYEQLISQGCIPGQVT-YASII---NAYCRIAL-YSKAEKVFIE 424 (603)
Q Consensus 359 ~~~~~~~~-----~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll---~~~~~~g~-~~~a~~~~~~ 424 (603)
++..+..- -..+-+..+. .-+...=+.+|+.....++ |..- ...++ .-+-+.|. -++|..+++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 54332110 0111122221 1112333445555554432 2211 11222 23445555 7889999998
Q ss_pred HHHcCCCcCHhhHHHHHH----HHHc---cCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHH--HHhcCCHHHHHHH
Q 007461 425 MQQKGFDKCVVAYSSMVA----MYGK---TGRIRDAMWLVAKMKAKGCEPN----VWIYNSLMDM--HGRAKNLRQVEKL 491 (603)
Q Consensus 425 ~~~~~~~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~--~~~~g~~~~a~~~ 491 (603)
+.+-. +-|...-|.+.. .|.. ...+.+-.++-+-+.+.|+.|- ...-|.|.++ +..+|++.++.-.
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 88753 334433333322 2221 2234444444455566677763 3344555544 4568999998876
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007461 492 WKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGI 544 (603)
Q Consensus 492 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 544 (603)
-..+. .+.|...+|..+.-+.....++++|..++..+ +|+..+++.
T Consensus 485 s~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 485 SSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 66666 57899999999999999999999999999874 456666654
No 243
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.12 E-value=1.9 Score=37.57 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 295 SIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 295 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
.||--+.+-+...|++++|..+|+..+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=2.1 Score=39.29 Aligned_cols=122 Identities=13% Similarity=0.021 Sum_probs=65.5
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA 241 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 241 (603)
....|++.+|..+|+......+.+..+--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 44566777777777777666666666666677777777777777777766654321111112112233333333333222
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 242 ALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
.+-..... ++.|...--.+...+...|+.++|++.+-.+.++
T Consensus 224 ~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 224 DLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22222211 1123345556667777777777777766555443
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.08 E-value=0.063 Score=33.74 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=19.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHH
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSA 192 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 192 (603)
+..+...|.+.|++++|+++|+++.+..|.+..+|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33444455555555555555555555555444444443
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.06 E-value=1.2 Score=45.38 Aligned_cols=129 Identities=12% Similarity=-0.012 Sum_probs=59.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCC-cc------hhhHHHHHhhhhh----cCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGE-IA------LLAFNSAMGGYNK----LHMYYSTILVYEKMKSAGIVLDSGCYCQ 226 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~------~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 226 (603)
++....=.||-+.+++++....+.+. .. .-.|+.++..+.. ....+.|.++++.+.+. -|+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 33333344566666666665544332 11 1233333333222 23455566666666554 344444432
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 227 -IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 227 -ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
-.+.+...|++++|.+.|+........-.+.....+-.+.-.+.-..++++|.+.|..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 23444555666666666665432111111111223344444555556666666666666543
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.46 Score=45.37 Aligned_cols=91 Identities=12% Similarity=-0.006 Sum_probs=49.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIY-----NVLP---------DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (603)
...+.+.|++..|..-|+..... +..+ -..+++-+...+.+.+++..|+......+..++.++-+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34677888888888888876532 1111 112333344444455555555555555555555555555
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
---..+|...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5555555555555555555555554
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.72 Score=42.76 Aligned_cols=161 Identities=8% Similarity=-0.095 Sum_probs=113.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHH----HHHHHHHHhcCCH
Q 007461 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIY----NSLMDMHGRAKNL 485 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~ 485 (603)
-..|+..+|-..++++.+. .+.|...+.-.=++|.-.|+.+.-...++++... ..||...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4568888888889888876 5788888888888999999999999999888764 34454333 3344455678999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C---CHHHHHHHHHHHHccCCHHHHHHH
Q 007461 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-I---DRAIAGIMVGVFSKLSQIEELVKL 561 (603)
Q Consensus 486 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A~~~ 561 (603)
++|++.-++..+.+ +.|.-.-.++...+...|+..++.++..+-... .. . -...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999987653 335566677777888889999999987764332 11 1 112233444456667999999999
Q ss_pred HHH-HHhCCCCCCH
Q 007461 562 LQD-MKSEGTKLDE 574 (603)
Q Consensus 562 ~~~-m~~~g~~~~~ 574 (603)
|++ |.++--+.|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 985 4444334444
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.89 E-value=0.41 Score=43.27 Aligned_cols=99 Identities=9% Similarity=0.073 Sum_probs=59.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC-CC-ChhhHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI-VL-DSGCYCQIM 228 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~ll 228 (603)
.|+.-+..+ +.|++..|...|..+.+..|. ...++-.|...+...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 345677777777777766553 345555666666666777777666666655321 11 123455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 229 EAYYKIGDSEKVAALFLECKSRKLD 253 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (603)
....+.|+.++|..+|+++.++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 6666666666666666666665543
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.89 E-value=5 Score=40.69 Aligned_cols=408 Identities=10% Similarity=-0.012 Sum_probs=228.0
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKS-TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
|..+|......... +.+...|+.+... .|-.. -|......=.+.|..+.+..+|++... +++-+...|...+..
T Consensus 48 wt~li~~~~~~~~~-~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 48 WTTLIQENDSIEDV-DALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred hHHHHhccCchhHH-HHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 44445544333333 5577788877754 34443 577777777889999999999999875 456777788777765
Q ss_pred HH-ccCChHHHHHHHHHHHhcCC---cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---Hc
Q 007461 162 CV-RARKFKIANTLLQVFITDGE---IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY---KI 234 (603)
Q Consensus 162 ~~-~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~ 234 (603)
+. ..|+.+..+..|+....... .....|...|..-...+++.....+++++++.-. .-++....-|. ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhc
Confidence 54 45888888889998877544 4677899999999999999999999999987421 12333222222 11
Q ss_pred ------CCHHHHHHHHHHHHhC-CCCCCCccHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007461 235 ------GDSEKVAALFLECKSR-KLDSTPFSTHMYKILCDSLGK-SGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS 306 (603)
Q Consensus 235 ------g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (603)
-..+++.++-.....+ ...........+..-+..-.. .+..+++.....+... .--..+-.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~ 267 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQK 267 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHh
Confidence 1233333332222211 000000001111111111111 1112222221111110 01111112
Q ss_pred cCCHHHHHHHHHHHHHcC---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 007461 307 ITEVKLAEELFKEAEEKG---M----LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRG 379 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 379 (603)
.......+..++...+.. + .++...|...++.-.+.|+.+.+.-+|+...---- .-...|-..+.-....|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA-LYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCc
Confidence 223333344444444331 1 22456788888888889999999888887753211 112235555555555688
Q ss_pred HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCCHHHHH--
Q 007461 380 YWAAVKVYEQLISQGCIPGQ--VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC-VVAYSSMVAMYGKTGRIRDAM-- 454 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~-- 454 (603)
.+-|-.++....+-.++-.+ ..+.+.+ +-..|+++.|..+++.+...- |+ +..-..-+....+.|..+.+.
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 88888777766554433222 2222222 344678999999999887763 33 223333344455677777777
Q ss_pred -HHHHHHHHcCCCCCHhHHHHHHHHH-----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 455 -WLVAKMKAKGCEPNVWIYNSLMDMH-----GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAR 518 (603)
Q Consensus 455 -~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 518 (603)
+++....+. .-+..+.+.+.--+ .-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 423 ~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 333333221 22333333333322 3367889999999999864 5666677888887776554
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.82 E-value=8 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 007461 509 TVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 509 ~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.|+.-+...+++-+|-++..+..
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHh
Confidence 34444444555555555554444
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=1 Score=43.17 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.+..+..+|.+.+++..|++.-++.++.+ ++|...+-.=..+|...|+++.|+..|+++.+..+. |..+-+-++.+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34555566666666666666666666443 234445555555666666666666666666664322 3334444444444
Q ss_pred ccCCHH-HHHHHHHHHHh
Q 007461 551 KLSQIE-ELVKLLQDMKS 567 (603)
Q Consensus 551 ~~g~~~-~A~~~~~~m~~ 567 (603)
+....+ ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 433333 23555666654
No 253
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.75 E-value=6.9 Score=41.65 Aligned_cols=196 Identities=13% Similarity=0.068 Sum_probs=98.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHH-ccCChHHHHHHHHHHHhcCCc----c--
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFK-IYNVLPD--AHTCSRLVASCV-RARKFKIANTLLQVFITDGEI----A-- 185 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~----~-- 185 (603)
+...|..||. .|++.++-+. ...++|. ..++-.+...+. ...+++.|+..+++....... +
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555555 3344444444 3333332 234444555544 556777777777765433221 1
Q ss_pred hhhHHHHHhhhhhcCcHHHHHHHHHHHHhC----CCCCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHH
Q 007461 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSA----GIVLDSGCYCQI-MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTH 260 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (603)
-.+-..++..+.+.+... |...+++.++. +..+-...+..+ +..+...+|...|.+.++.+.........+.+.
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 112234455555555544 77666665542 122222233333 222323368888888887776544322333334
Q ss_pred HHHHHHHHHh--ccCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 007461 261 MYKILCDSLG--KSGRAFEALKFFRDMKEKGI---------LEDPSIYASLICSFA--SITEVKLAEELFKEAE 321 (603)
Q Consensus 261 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~ 321 (603)
++-.++.+.. ..+..+++++.++.+..... .|-..+|..++..++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444433 34556677777766633211 234556666666554 5667666666665554
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.63 E-value=2.4 Score=35.77 Aligned_cols=101 Identities=10% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
++++.+.+.+++|+...|..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 3444444555555555666666666665554432 233333344444443333322221 122233333333221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 500 VTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 500 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
+ ...+..++..+...|++-+|+++.+..
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0 012334444555555555555555443
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=2.2 Score=37.93 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=38.9
Q ss_pred hHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 007461 188 AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267 (603)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~ 267 (603)
.|.....+|.....+++|...+.+..+. ...|...|. ...-++.|.-+.+++....-. +..|+--..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEv-----vdl~eKAs~ 99 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEV-----VDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHH
Confidence 3444445555566666666655555431 111111111 112234444444444332211 124555556
Q ss_pred HHhccCCHHHHHHHHHHH
Q 007461 268 SLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 268 ~~~~~g~~~~A~~~~~~m 285 (603)
.|..+|.++.|-..+++.
T Consensus 100 lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHhCCcchHHHHHHHH
Confidence 666666666665555544
No 256
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.47 E-value=4.4 Score=38.21 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH--cC----CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC-
Q 007461 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK--IG----DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR- 274 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 274 (603)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ...+|..+|+.|++..+-.+..+-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888888777666653333333 22 355788889999887665554444555555444 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 275 ---AFEALKFFRDMKEKGILEDP--SIYASLICSFASITE--VKLAEELFKEAEEKGMLRDPEVCLKLV 336 (603)
Q Consensus 275 ---~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
.+++..+|+.+.+.|...+. .....++..+....+ +.++.++++.+.+.|+.+....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35667777778777766532 233333333332222 346667777777777666555555443
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.33 E-value=2.8 Score=39.48 Aligned_cols=156 Identities=10% Similarity=0.063 Sum_probs=84.6
Q ss_pred HhcCCCChHHHHHHHHHHhhC-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHH
Q 007461 90 MLKDPQTQELAYDYYNEAKKL-PEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIY--NVLPD---AHTCSRLVASCV 163 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~ 163 (603)
+...++..+ |+..|.....+ ++..-.-.+|..+..+..+.|.+++++..--.-+.. ..... -.+|..+.+++-
T Consensus 16 Ly~s~~~~~-al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 16 LYQSNQTEK-ALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred HhcCchHHH-HHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554 77777665542 111222346777888888888887766543222111 11111 123444444454
Q ss_pred ccCChHHHHHHHHHHHhcCCcc-----hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIA-----LLAFNSAMGGYNKLHMYYSTILVYEKMKSAG-----IVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~ 233 (603)
+.-++.+++.+-..-...+..+ -....++..+....+.++++++.|+...+.- ......++..|-+.|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 4455555555555444433211 1334456666777777888888887765421 11123466777777888
Q ss_pred cCCHHHHHHHHHH
Q 007461 234 IGDSEKVAALFLE 246 (603)
Q Consensus 234 ~g~~~~a~~~~~~ 246 (603)
..|.++|.-+..+
T Consensus 175 l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 175 LKDYEKALFFPCK 187 (518)
T ss_pred HHhhhHHhhhhHh
Confidence 8887777655443
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=4.6 Score=37.73 Aligned_cols=113 Identities=7% Similarity=-0.067 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH----HHHHhhhhhcCcHHHH
Q 007461 130 SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF----NSAMGGYNKLHMYYST 205 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a 205 (603)
+|++.+|-..++++.+. .|.|..++...=++|.-.|+...-...++++...-.++...| ....-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444444444444332 234444444444444444444444444444443322222111 1122223344444444
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007461 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 206 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 244 (603)
.+.-++..+.+. .|......+...+-..|+..++.++.
T Consensus 195 Ek~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 195 EKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHH
Confidence 444444443321 13333344444444444444444443
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.28 E-value=4.8 Score=37.83 Aligned_cols=122 Identities=14% Similarity=0.055 Sum_probs=56.6
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhc----CC-----c-----c
Q 007461 128 VQSKKWDSIVSLSEDFKIYN--VLPDA------HTCSRLVASCVRARKFKIANTLLQVFITD----GE-----I-----A 185 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-----~-----~ 185 (603)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+.+..+++.|..++++..+. +. + .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35667777777777665432 12221 12333333332222666666665554332 11 1 1
Q ss_pred hhhHHHHHhhhhhcCcHH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 186 LLAFNSAMGGYNKLHMYY---STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
..+...++.+|...+..+ +|..+++.+...... .+.++..-++.+.+.++.+++.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234445555555554433 344444444332211 2334444455555566666666666666544
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.07 E-value=0.92 Score=35.79 Aligned_cols=90 Identities=12% Similarity=-0.030 Sum_probs=55.0
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHHcCCHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDS---GCYCQIMEAYYKIGDSE 238 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~ 238 (603)
++..|+++.|++.|.+....-|....+||.-..++.-.|+.++|++-+++.++..-.... ..|..-...|...|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 455667777777777766666666777777777777777777777766666653211111 12233334455667777
Q ss_pred HHHHHHHHHHhCC
Q 007461 239 KVAALFLECKSRK 251 (603)
Q Consensus 239 ~a~~~~~~~~~~~ 251 (603)
.|+.=|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 7777776665544
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.99 E-value=0.71 Score=41.81 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC---cchhhHHHH
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD---AHTCSRLVASCVRARKFKIANTLLQVFITDGE---IALLAFNSA 192 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l 192 (603)
.|+.-+. +.+.|++..|...|...++.. +.+ ..++=.|..++...|++++|..+|..+.+..| .-+.++-.|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4766555 557788999999999998874 222 33455688899999999999999999988766 356888899
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhC
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.....+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999886
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=93.96 E-value=2.6 Score=41.58 Aligned_cols=148 Identities=10% Similarity=0.025 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHHHc-CCCcC-HhhHHHHHHHHHc---------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 007461 414 LYSKAEKVFIEMQQK-GFDKC-VVAYSSMVAMYGK---------TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA 482 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 482 (603)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.+.-++..+.+ .-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356788888888722 23443 4444444433332 233456777777777763 44777777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHH
Q 007461 483 KNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-IDRAIAGIMVGVFSKLSQIEELVK 560 (603)
Q Consensus 483 g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 560 (603)
++++.|..+|++... +.||. .+|......+..+|+.++|.+.+++..+..+. .-..+....++.|+..+ .++|++
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 889999999999884 45665 35666666677789999999999987765322 12234445555666655 677888
Q ss_pred HHHHH
Q 007461 561 LLQDM 565 (603)
Q Consensus 561 ~~~~m 565 (603)
++-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 77543
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.90 E-value=7.5 Score=38.67 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKG-CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 497 (603)
.+-..+..++-+.|+.++|.+.+.+|.+.. ..-+..+...|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 333445555566777777777777776531 111334556677777777777777777777643
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=3.4 Score=34.63 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=58.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHHccCC
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS-IYASLIC--SFASITE 309 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~--~~~~~g~ 309 (603)
+.+..++|..-|..+...+...-| +...--+.....+.|+..+|+..|++.-.....|-.. -...|=. .+...|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 445555555555555555443322 1111222233445556666666666554432223221 1111111 2235566
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 310 VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
++......+.+...+.+.-...-.+|.-+-.+.|++.+|...|..+.+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6665555555444333333334445555666667777777777666553
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.62 E-value=8 Score=38.49 Aligned_cols=60 Identities=7% Similarity=0.113 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMKNAKLKI-SDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
..+..+.-+.|+.++|.+.+.+|.+..+.. ...+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555666677777777777766543322 233556677777777777777777776543
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=6 Score=36.47 Aligned_cols=143 Identities=8% Similarity=0.097 Sum_probs=85.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 007461 408 AYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQ 487 (603)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (603)
.....|+..+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4566788888888888877764 334566677888888888888888888887643111111111222344444444444
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCC
Q 007461 488 VEKLWKEMERRKVTP-DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-IDRAIAGIMVGVFSKLSQ 554 (603)
Q Consensus 488 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 554 (603)
...+-.+.-. .| |...-..+...+...|+.++|.+.+=.+.+++.. -|...-..+++.+.-.|.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 4444444432 24 4555566667777788888888877666554322 244444556665555553
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.52 E-value=0.3 Score=30.61 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 159 (603)
.++..+...+.+.|++++|+++|+++.+.. +-|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 467788999999999999999999999886 55666665543
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.47 E-value=0.75 Score=42.36 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=49.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh-----CCCCCChhhHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS-----AGIVLDSGCYCQIM 228 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll 228 (603)
++..++..+...|+++.+...++++....|-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444555566666677777777777776666777777777777777777777776666554 45666555544444
Q ss_pred HH
Q 007461 229 EA 230 (603)
Q Consensus 229 ~~ 230 (603)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.43 E-value=2 Score=34.99 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 126 YLVQSKKWDSIVSLSEDFKIYNV--LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
...+.|++++|.+.|+.+...-. +-...+...++.+|.+.++++.|...++++++..|
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 33444555555555555544320 11223333444444444555555555444444444
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.35 E-value=7.1 Score=36.67 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 007461 401 TYASIINAYCRIALYS---KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 477 (603)
++..++.+|...+..+ +|..+++.+.... +..+.++..-++.+.+.++.+++.+++.+|... +.-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 4555666666665543 4555555554432 223555656666777778888888888888765 2212333444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 007461 478 MH---GRAKNLRQVEKLWKEMERRKVTPDK 504 (603)
Q Consensus 478 ~~---~~~g~~~~a~~~~~~m~~~~~~p~~ 504 (603)
.+ .. .....+...+..++...+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 43 33 2335566666665544444444
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.34 E-value=5.8 Score=35.59 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNA-KLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN 407 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 407 (603)
..........+...+.+..+...+...... ........+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 344445555555555555555555554431 1112223344444444444555555555555544322221 11111111
Q ss_pred -HHHhcCChHHHHHHHHHH
Q 007461 408 -AYCRIALYSKAEKVFIEM 425 (603)
Q Consensus 408 -~~~~~g~~~~a~~~~~~~ 425 (603)
.+...|+++.+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 138 GALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 344455555555555554
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.28 E-value=1 Score=41.43 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007461 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM-----NGGVIDRAIAGI 544 (603)
Q Consensus 470 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 544 (603)
.++..++..+...|+.+.+...++++.... +-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344555555666666666666666665442 22455566666666666666666666665543 244444444443
Q ss_pred H
Q 007461 545 M 545 (603)
Q Consensus 545 l 545 (603)
+
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.81 E-value=5.2 Score=33.60 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=60.9
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSG-CYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|...--..----.-.+..+|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555544331111 111222334455666666666666655444432210000111112345566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
+...-++-+-..+-......-..|.-+-.+.|++..|..+|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66666655544433333334445555555677777777777776654
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.53 E-value=9.8 Score=36.11 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=25.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 265 LCDSLGKSGRAFEALKFFRDMKEKGI-----LEDPSIYASLICSFASITEVKLAEELFKEA 320 (603)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 320 (603)
+..++...+.++++++.|+...+-.. ......+..+-..+.+..|.+++.-+..++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
Confidence 44444444455555555554432110 011234445555555555555554444443
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.51 E-value=7.9 Score=34.99 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=34.3
Q ss_pred ccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGM--LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 375 (603)
+.|++++|...|+.+..... +-...+.-.++.++.+.+++++|+..+++.....+.-...-|-..|.+++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 45555555555555554321 11233444455555666666666666665554443333333444444444
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.49 E-value=9.7 Score=35.97 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHHc
Q 007461 275 AFEALKFFRDMKEKGILEDPSIYASLICSFAS--IT----EVKLAEELFKEAEEK 323 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~ 323 (603)
+++.+++++.|.+.|.+-+..+|.+..-.... .. ....+..+++.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34455677777777777666666543332222 11 234455555555554
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.36 E-value=4.9 Score=32.75 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=24.2
Q ss_pred cCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 165 ARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.|++++|.+.|+.+...-|. ...+-..++.+|.+.+++++|+..+++.++.
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34555555555555444331 2334444444555555555555555554443
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.13 E-value=6.6 Score=33.19 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=43.4
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
..+.+.++.|+...+..++..+.+.|++.. +.++...++-+|.......+-.+. +....+.++=-+|.+.=
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL--- 88 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL--- 88 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh---
Confidence 334444555555555555555555555332 333334444455444443332222 12222333333333220
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
...+..+++.+...|++-+|.++.+..
T Consensus 89 -~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 -GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 013444555555566666666665554
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.08 E-value=8.5 Score=34.42 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=153.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 007461 342 EGLVEKTLDVVESMKNAKLK-ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ-GCIPGQVTYASIINAYCRIALYSKAE 419 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~ 419 (603)
.+....+...+......... .....+......+...+....+...+...... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555544432 12456777788888899999999888887652 22345566667777777888889999
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVA-MYGKTGRIRDAMWLVAKMKAKGCEP----NVWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
..+.........+ ......... .+...|+++.|...+++.... .| ....+......+...++.+.+...+.+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999888754333 222333333 688899999999999998652 33 333444444456778899999999999
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 495 MERRKVTP-DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 495 m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
..... .. ....+..+...+...++++.+...+......... ....+..+...+...|..+++...+++....
T Consensus 193 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88642 22 3567888888888889999999999988875332 2344444555555777899999888888765
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.83 E-value=9.1 Score=34.21 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=40.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYI 340 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (603)
.|.--..+|....+++.|...+.+..+- .+-+. .+-.- ....+.|.-+.+++.+.. --...++.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnr-slfhA------AKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR-SLFHA------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc-cHHHH------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3444555666666777776666555421 11111 11111 122344444444444321 11234455556677
Q ss_pred HcCCHHHHHHHHHHH
Q 007461 341 EEGLVEKTLDVVESM 355 (603)
Q Consensus 341 ~~g~~~~a~~~~~~~ 355 (603)
.+|..+.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 777766665555544
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.68 E-value=2.6 Score=36.33 Aligned_cols=94 Identities=12% Similarity=0.028 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------H
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV--SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRA-------I 541 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~ 541 (603)
.+..+...|.+.|+.+.|.+.|.++.+....|... .+-.+|+.....+++..+.....++...--..+.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566666777777777777777776654444432 35666666667777777777766654432111111 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 542 AGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
|..+ .+...|++.+|.+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234678888888776554
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.64 E-value=0.17 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.052 Sum_probs=15.2
Q ss_pred HHHhcCCcchhhHHHHHhhhhhcCcHHHHH
Q 007461 177 VFITDGEIALLAFNSAMGGYNKLHMYYSTI 206 (603)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 206 (603)
+.++..|.+..+|+.+...|...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334444455555555555555555555543
No 283
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.63 E-value=21 Score=37.96 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHc--
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG-FDKCVVAYSSMVAMYGK-- 446 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 446 (603)
....+.-.|+++.|++++-. ..+...+.+.+...+..|.-.+-.+... ..+.... -.|...-+..||..|++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34455566777777776665 1122334444444443332221111111 2222110 01111445666666664
Q ss_pred -cCCHHHHHHHHHHHHH
Q 007461 447 -TGRIRDAMWLVAKMKA 462 (603)
Q Consensus 447 -~g~~~~A~~~~~~m~~ 462 (603)
..++.+|.+.+--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 3456666666655543
No 284
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.27 E-value=6.2 Score=31.34 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=23.3
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
...|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|.+=+++..
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 34445555555554444331 1133445554555544555555544444443
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.82 E-value=5.2 Score=34.45 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 330 EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD--CISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
..+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556777788888888888888877776544332 2245556666666777766666655543
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.44 E-value=0.63 Score=27.54 Aligned_cols=25 Identities=4% Similarity=0.150 Sum_probs=17.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 542 AGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
|..|...|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777744
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.27 E-value=2 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 137 VSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
.+-++.+...++.|++....+.+++|.+-+++..|.++|+.+.
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555444
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.22 E-value=0.63 Score=27.56 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=15.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~ 286 (603)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666777777777777766643
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.17 E-value=2 Score=32.23 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+..+-++.+...++.|++....+.+++|.+-+++..|.++|+.+...-......|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 44444555555566666666666666666666666666666666554333333444444
No 290
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=30 Score=36.60 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLP---DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
++-+.+.+.+++|+...+... |..| -.......|..+...|++++|-...-.|... +...|..-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhcccc
Confidence 344555666667766665433 2233 2344555666666667777666665555432 3333443333333333
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-------------CCCCCCccHHHHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR-------------KLDSTPFSTHMYKILCD 267 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~li~ 267 (603)
+... ++.-++......+...|..++..+.. .+...-.++..+.... .......+...-..|+.
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 3222 11122222222344456655555554 2222222222111100 00000001123445777
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 007461 268 SLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 268 ~~~~~g~~~~A~~~~~~m~~ 287 (603)
.|...+++..|++++-.+++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 88888888888888766653
No 291
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.37 E-value=33 Score=36.54 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+|=.|.++|++++|.++.......-......+-..+..|..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 344445566666666665543333333334445555555544
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.12 E-value=15 Score=32.27 Aligned_cols=173 Identities=10% Similarity=0.036 Sum_probs=86.6
Q ss_pred HHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 174 LLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD 253 (603)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (603)
=|.+.....|.-+.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++.-|.+-|...-+.++.
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCC
Confidence 34444455566677788888888888888888888888777644322222222222 22457777777666555544432
Q ss_pred CCCccHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHcCCC-----
Q 007461 254 STPFSTHMYKILCDSLG-KSGRAFEALKFFRDMKEKGILEDPSIYASLICSF-ASITEVKLAEELFKEAEEKGML----- 326 (603)
Q Consensus 254 ~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~----- 326 (603)
. | |.+|=-.+. ..-++.+|..-+.+--+ ..|..-|...|-.+ ...=..+. +++.+....-.
T Consensus 166 D-P-----fR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a~~n~~~A 233 (297)
T COG4785 166 D-P-----FRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET---LMERLKADATDNTSLA 233 (297)
T ss_pred C-h-----HHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH---HHHHHHhhccchHHHH
Confidence 1 1 333322221 22345555543322211 22444444333322 21111111 22222211100
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 327 -RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359 (603)
Q Consensus 327 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 359 (603)
.-..+|--|...|...|+.++|..+|+-....+
T Consensus 234 e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 234 EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 013456667777777888888888877666544
No 293
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.01 E-value=26 Score=34.99 Aligned_cols=94 Identities=7% Similarity=-0.042 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHH
Q 007461 99 LAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS-CVRARKFKIANTLLQV 177 (603)
Q Consensus 99 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~ 177 (603)
....+|+.+... +..|+..|..-+..+-+.+.+.+...+|..|...+ +.++..|-....- |-.+.+++.|+.+|..
T Consensus 89 rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 467778888764 57799999999999999998999999999999886 5555555443332 4444558999999999
Q ss_pred HHhcCCcchhhHHHHHhh
Q 007461 178 FITDGEIALLAFNSAMGG 195 (603)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~ 195 (603)
-.+.++.++..|-...+.
T Consensus 166 gLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HhhcCCCChHHHHHHHHH
Confidence 988888777776655443
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.96 E-value=18 Score=32.89 Aligned_cols=189 Identities=12% Similarity=0.152 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHccCCH
Q 007461 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE---KGIL--EDPSIYASLICSFASITEV 310 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~~~~~ll~~~~~~g~~ 310 (603)
++++|..-|.++.+.......+.-.+.-.+|....+.|++++..+.|.+|+. ..+. -...+.++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 5555665555555443333222223344556666666666666666666542 1111 1344566666666555555
Q ss_pred HHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------CCHhhHHHHHHHH
Q 007461 311 KLAEELFKEAEEK-----GMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK-----------ISDCISCAIVNGF 374 (603)
Q Consensus 311 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~ 374 (603)
+...++++.-.+. +-..=-.+-+.|...|...|++.+..+++.++....-. .-..+|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555544433221 00001112335666677777777777777766532110 1123466667777
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----HhcCChHHHHH-HHHHH
Q 007461 375 SKRRGYWAAVKVYEQLISQG-CIPGQVTYASIINAY-----CRIALYSKAEK-VFIEM 425 (603)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~~-~~~~~ 425 (603)
....+-.....+|++...-. --|.+.. ..+|+-| .+.|++++|.. +|+..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 77777777777777654322 1233332 2344444 34567776643 34443
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=6.3 Score=39.96 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
.+.+..-+.+.|..++|+++ .+|...- .....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 34455555555655555432 2232221 223345677777777665543 55668888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007461 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 561 (603)
.+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|.. |.-.-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence 8888888888777642 345566666777766666666666555432 2233356677888888887
Q ss_pred HHHH
Q 007461 562 LQDM 565 (603)
Q Consensus 562 ~~~m 565 (603)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7544
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.87 E-value=0.52 Score=27.50 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=19.4
Q ss_pred HHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 007461 104 YNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137 (603)
Q Consensus 104 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 137 (603)
|+++++.. +-+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444432 445666777777777777776664
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.55 E-value=6 Score=36.65 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=71.4
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhh
Q 007461 147 NVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGC 223 (603)
Q Consensus 147 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 223 (603)
|.+....+-..++..-....++++++..+-++...... ...+-.+.++.+.+ -++++++.++..=++.|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 33444455555555555567778888877777654331 11111222333332 367788988888888999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 224 YCQIMEAYYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 224 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
++.+|+.+.+.+++.+|..+...|..+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877766543
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.49 E-value=13 Score=30.96 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=6.9
Q ss_pred hcCCHHHHHHHHHHHH
Q 007461 481 RAKNLRQVEKLWKEME 496 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~ 496 (603)
..|++.+|..+|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 3444444444444443
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=4.7 Score=40.83 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=90.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKL 312 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 312 (603)
-.|+++.|..++..+.+ ...+.++..+.+.|..++|+++ .+|.... .....+.|+++.
T Consensus 598 mrrd~~~a~~vLp~I~k----------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~i 655 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK----------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDI 655 (794)
T ss_pred hhccccccccccccCch----------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHH
Confidence 34666666665544431 2356677777777877777765 2332211 123346778888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 313 AEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 313 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
|.++..+. .+..-|..|.++..+.|++..|.+.|....+ |..|+-.+...|+.+....+-....+
T Consensus 656 A~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 87776553 2566677888888888888888877776553 44566666666666655555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007461 393 QGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424 (603)
Q Consensus 393 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 424 (603)
.|. .|...-+|...|+++++.+++.+
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 542 23333455566777777766654
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.07 E-value=6.5 Score=34.14 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 203 YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
+.|+..|-.+...+.--++.....|...|. ..|.+++..++.+..+.....+.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555655555544434444444444443 456666666666665544444344556666666666666666655
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.79 E-value=15 Score=30.69 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHHHH
Q 007461 130 SKKWDSIVSLSEDFK 144 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~ 144 (603)
.++.+++..+++.+.
T Consensus 23 ~~~~~D~e~lL~ALr 37 (160)
T PF09613_consen 23 LGDPDDAEALLDALR 37 (160)
T ss_pred cCChHHHHHHHHHHH
Confidence 344444444444444
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.64 E-value=7.7 Score=31.77 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=42.6
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007461 470 WIYNSLMDMH---GRAKNLRQVEKLWKEMERRKVTPDKV---SYTTVISAYNRAREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 470 ~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 535 (603)
.+.+.||... ...+++++++.+++.|.- +.|+.. ++... .+...|+|++|.++|+++.+.+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC
Confidence 3444555443 347899999999999873 455543 33333 36788999999999999887643
No 303
>PRK09687 putative lyase; Provisional
Probab=87.55 E-value=25 Score=33.00 Aligned_cols=22 Identities=5% Similarity=0.140 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 007461 474 SLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 474 ~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
..+.+++..|+. +|...+..+.
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHH
Confidence 344445555553 4555555544
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=11 Score=34.99 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+++++.++..-...|+-||..+++.+|+.+.+.+++.+|..+...|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555555555444443
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.78 E-value=16 Score=29.99 Aligned_cols=51 Identities=8% Similarity=-0.209 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 165 ARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.++.+++..+++.+.-..|.....-..-...+...|++.+|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555544433333333333445555666666666655554
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.49 E-value=0.28 Score=40.73 Aligned_cols=84 Identities=10% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007461 475 LMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQ 554 (603)
Q Consensus 475 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34555555666666666666665443444555666666666665556665555511 11112234555556666
Q ss_pred HHHHHHHHHHH
Q 007461 555 IEELVKLLQDM 565 (603)
Q Consensus 555 ~~~A~~~~~~m 565 (603)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.44 E-value=7 Score=29.17 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 484 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
+.-++.+-++.+....+-|++....+.+++|.+.+|+..|+++++-.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445566666666666777777777777777777777777777776653
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.35 E-value=6.3 Score=29.76 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444555555556666666666666666666666666666666543
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.50 E-value=57 Score=34.27 Aligned_cols=178 Identities=20% Similarity=0.187 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 007461 275 AFEALKFFRDMKEKGILEDPSIYASLIC----S-FASITEVKLAEELFKEAEE-------KGMLRDPEVCLKLVLMYIEE 342 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~----~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 342 (603)
..+|.++++...+.|. ...-..+.. . .....|.+.|..+++.+.+ .+ ++.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567777777777652 222222221 1 3345678888888877766 33 333455556666553
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hc
Q 007461 343 G-----LVEKTLDVVESMKNAKLKISDCISCAIVNGFSK---RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC--RI 412 (603)
Q Consensus 343 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~ 412 (603)
. +.+.|..++...-+.+. |+.... +...+.. ..+...|.++|...-..|.. ...-+..++-... -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 2 44556666666666655 232211 1111111 13455666666666666532 1111111111111 12
Q ss_pred CChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 413 ALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464 (603)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 464 (603)
.+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 34566666666666665 3322222222333333 55555555555555543
No 310
>PRK09687 putative lyase; Provisional
Probab=84.38 E-value=36 Score=31.93 Aligned_cols=200 Identities=13% Similarity=0.051 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCcCHhh
Q 007461 366 ISCAIVNGFSKRRGY----WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALY-----SKAEKVFIEMQQKGFDKCVVA 436 (603)
Q Consensus 366 ~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~ 436 (603)
.-...+.++.+.|+. .++...+..+... .++...-...+.++...+.. ..+...+..... .++..+
T Consensus 70 vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~V 144 (280)
T PRK09687 70 ERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNV 144 (280)
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHH
Confidence 334444555555542 3455555555332 35555555555555544321 122233322222 235556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAK-NLRQVEKLWKEMERRKVTPDKVSYTTVISAYN 515 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 515 (603)
-...+.++++.++ .++...+-.+.+ .+|..+-...+.+++..+ +...+...+..+.. .+|...-...+.++.
T Consensus 145 R~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 145 RFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 6667777777776 456666666665 345555555566666543 23456666666553 346666777777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 516 RAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRD 586 (603)
Q Consensus 516 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~ 586 (603)
+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.+|.+
T Consensus 218 ~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 218 LRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred ccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 8877 45666666555542 2 233567777888874 788888888764 3577777776766643
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.32 E-value=61 Score=34.48 Aligned_cols=170 Identities=10% Similarity=0.092 Sum_probs=89.6
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCc--chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEI--ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
++-+.+.+.+++|.++-+......+. ....+...+..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 44455667778887776655443332 4456777777888888888888777777653 34455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007461 237 SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEEL 316 (603)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 316 (603)
......++ +.... ..+...|..++..+.. .+ ..-|.+.+.. ..++...-..++++.-
T Consensus 439 l~~Ia~~l---Pt~~~---rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~~----------- 495 (846)
T KOG2066|consen 439 LTDIAPYL---PTGPP---RLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISATE----------- 495 (846)
T ss_pred cchhhccC---CCCCc---ccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhcc-----------
Confidence 44333322 21111 1123467777776665 22 2223333322 1222222222222110
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 317 FKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
.+..+. .-+......|+..|...++++.|+.++-..++.
T Consensus 496 -~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 496 -PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred -hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 111111 012233334888899999999998888777654
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.88 E-value=7.7 Score=33.98 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
+.-+..+.+.+...+++...++-++.. +.|.-....++..++-.|++++|..-++..-...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 344455555666666666666555443 3444455555666666666666655555544443
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.55 E-value=11 Score=32.04 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHhhhhhcC-----------cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 171 ANTLLQVFITDGEIALLAFNSAMGGYNKLH-----------MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 171 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
|+.-|++.+..+|....++..+..+|...+ .+++|.+.|++..+ ..|+..+|+.-+.... +
T Consensus 54 AisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------k 125 (186)
T PF06552_consen 54 AISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------K 125 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------T
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------h
Confidence 333444444444544455555555444332 25666677777666 4688888888777663 4
Q ss_pred HHHHHHHHHhCCC
Q 007461 240 VAALFLECKSRKL 252 (603)
Q Consensus 240 a~~~~~~~~~~~~ 252 (603)
|-++..++...+.
T Consensus 126 ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 126 APELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHh
Confidence 5666666655543
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.13 E-value=21 Score=31.07 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCcHHHH
Q 007461 521 DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE---GTKLDERLYHSAMNALRDAGLQMQA 593 (603)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~ll~a~~~~g~~~~a 593 (603)
+.|.+.|-.+...+.--++...-.|...|. ..+.++++.++-+..+. +-.+|...+.+|...+.+.|+.++|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444443333323333333333332 33444555554444432 2234455555555555555555444
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.00 E-value=2.9 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466666666666666666666666654
No 316
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.87 E-value=31 Score=29.97 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=63.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPD-A----HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
.-+.+.|++++|..-|......- ++. . ..|.--..++.+.+.++.|+.-..+.++.++....+..--..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 45667888888888888877653 222 1 23333345566778888888888887777776666655556678888
Q ss_pred CcHHHHHHHHHHHHhCC
Q 007461 200 HMYYSTILVYEKMKSAG 216 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~ 216 (603)
..+++|++-|..+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888887753
No 317
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.83 E-value=40 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 007461 415 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK 459 (603)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (603)
..+|.++|.-+.+..-+ ..+-+.++.++....+..+|...+..
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHH
Confidence 46788999888775322 35556777888888888888777654
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.32 E-value=74 Score=33.97 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=117.7
Q ss_pred hhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHH--hHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH---
Q 007461 80 AKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKS--TLKLLIRYLV-QSKKWDSIVSLSEDFKIYNVLPDAH--- 153 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 153 (603)
...|..+|.. |++.++.+.+...++|..+ ++-.++..+. ...+.+.|...+++.....-.++..
T Consensus 30 l~~Y~kLI~~----------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 30 LKQYYKLIAT----------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred HHHHHHHHHH----------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3446666665 7888888886555555444 4555777776 5789999999999876554333221
Q ss_pred --HHHHHHHHHHccCChHHHHHHHHHHHhcCCc-----chhhHHHH-HhhhhhcCcHHHHHHHHHHHHhCC---CCCChh
Q 007461 154 --TCSRLVASCVRARKFKIANTLLQVFITDGEI-----ALLAFNSA-MGGYNKLHMYYSTILVYEKMKSAG---IVLDSG 222 (603)
Q Consensus 154 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~ 222 (603)
+...++..+.+.+... |...+++..+.-.. -...|..+ +..+...+++..|++.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234455566655544 88888886654332 22233333 333333479999999998877642 233444
Q ss_pred hHHHHHHHHH--HcCCHHHHHHHHHHHHhC------CCCCCCccHHHHHHHHHHH--hccCCHHHHHHHHHHHH
Q 007461 223 CYCQIMEAYY--KIGDSEKVAALFLECKSR------KLDSTPFSTHMYKILCDSL--GKSGRAFEALKFFRDMK 286 (603)
Q Consensus 223 ~~~~ll~~~~--~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 286 (603)
++..++.+.. +.+..+.+.+.++++... +.....+-..+|..+++.+ ...|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544 445566677776665321 1222344466777777665 45677777777766664
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.30 E-value=3.1 Score=25.23 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 286 (603)
.+++.|...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356677777777777777777776664
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.25 E-value=4.1 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKI 145 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 145 (603)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777776653
No 321
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.11 E-value=83 Score=33.72 Aligned_cols=232 Identities=7% Similarity=-0.042 Sum_probs=113.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH--HHHHHHHhcCCcchhhHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIAN--TLLQVFITDGEIALLAFNS 191 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~ 191 (603)
+.+...-...+.++...|+.++|....+.+-..| ...+..++.++..+.+.|.+.... +=++.+...+ +...-..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~--~~~lA~~ 202 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG--NTGLVTY 202 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 3455555667777777787777766666665555 345566667777666555443321 1111111111 1111111
Q ss_pred HHhhhhh------------cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCCc
Q 007461 192 AMGGYNK------------LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY--KIGDSEKVAALFLECKSRKLDSTPF 257 (603)
Q Consensus 192 l~~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~ 257 (603)
+...+.. ..+...+...+. .+.|+...-..++-++. ...+.+.|..++........-....
T Consensus 203 l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~ 277 (644)
T PRK11619 203 LAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQ 277 (644)
T ss_pred HHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHH
Confidence 1111100 001111111111 11122211111222222 2346688888888765444322221
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007461 258 STHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVL 337 (603)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
...++..+.......+...++...++...... .|......-+......++++.+...+..|-.... ....-.--+.+
T Consensus 278 ~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aR 354 (644)
T PRK11619 278 RQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQAD 354 (644)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHH
Confidence 23345555444444433556666665543321 2444455555555678888888777777644321 23333334666
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 007461 338 MYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 338 ~~~~~g~~~~a~~~~~~~~ 356 (603)
++...|+.++|...|..+.
T Consensus 355 a~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 355 LLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 6667888888888888764
No 322
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.03 E-value=4.9 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLI 391 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~ 391 (603)
|..+...+...|++++|+..|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444433
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.72 E-value=4.7 Score=22.98 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=19.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 541 IAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.|..+...+...|++++|++.+++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556777777888888888888777653
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.41 E-value=5.2 Score=22.80 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFK 144 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~ 144 (603)
..+...+...|++++|++.+++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444444444433
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.32 E-value=69 Score=32.32 Aligned_cols=164 Identities=10% Similarity=0.144 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 397 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
.|.....+++..+...-.+.-.+.+-.+|...| -+...|..+++.|... ..++-..+|+++.+..+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344455556666666555666666666666554 2345566666666555 45555666666655422 2333333343
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007461 477 DMHGRAKNLRQVEKLWKEMERRKVTPDK------VSYTTVISAYNRAREFDMCVKFYNEFRMN-GGVIDRAIAGIMVGVF 549 (603)
Q Consensus 477 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 549 (603)
.-|.+ ++...+..+|.++... +-|.. ..|.-+... -..+.+..+.+..++... |...-...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33433 5556666666555433 11211 123333221 123455555555555432 2222333444455556
Q ss_pred HccCCHHHHHHHHHHHHhC
Q 007461 550 SKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 550 ~~~g~~~~A~~~~~~m~~~ 568 (603)
....++.+|+++++.+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 6666666666666655543
No 326
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.24 E-value=99 Score=34.07 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=25.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
.|.+....+-+..+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355566677777788877765445566666777766654
No 327
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.69 E-value=72 Score=32.13 Aligned_cols=426 Identities=9% Similarity=0.053 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh-hcCcHHHHHHHHHHHH
Q 007461 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN-KLHMYYSTILVYEKMK 213 (603)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~ 213 (603)
....+|+....+ +..|...|..-+..|.+.+.+.+...+|.+|....|.++..|-....-.. .+.+++.|..+|.+-+
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 344455554433 35699999999998888888999999999999998877777765554433 3445899999998887
Q ss_pred hCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHHHhc----cCCH-HHHHH--
Q 007461 214 SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFS------THMYKILCDSLGK----SGRA-FEALK-- 280 (603)
Q Consensus 214 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~----~g~~-~~A~~-- 280 (603)
+.+.. ++..|-...+.-. ..+.++..+-...+......+ ...|+......-. .... ++...
T Consensus 168 R~npd-sp~Lw~eyfrmEL-----~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~ 241 (568)
T KOG2396|consen 168 RFNPD-SPKLWKEYFRMEL-----MYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKF 241 (568)
T ss_pred hcCCC-ChHHHHHHHHHHH-----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHH
Confidence 75422 2333332222111 011111111111111100000 0001111000000 0000 11111
Q ss_pred -HHHH--------HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007461 281 -FFRD--------MKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351 (603)
Q Consensus 281 -~~~~--------m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 351 (603)
...+ +... ..-++.++. +.|.+.++-..+....+.. ..-..+.-.-+.+....+
T Consensus 242 d~~kel~k~i~d~~~~~-~~~np~~~~------------~laqr~l~i~~~tdl~~~~----~~~~~~~~~~k~s~~~~v 304 (568)
T KOG2396|consen 242 DFLKELQKNIIDDLQSK-APDNPLLWD------------DLAQRELEILSQTDLQHTD----NQAKAVEVGSKESRCCAV 304 (568)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCccHH------------HHHHHHHHHHHHhhccchh----hhhhchhcchhHHHHHHH
Confidence 1111 1111 111222221 1222222222211111000 000000000111122244
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcC------CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 007461 352 VESMKNAKLKISDCISCAIVNGFSKRR------GYWAAVKVYEQLISQG-CIP-GQVTYASIINAYCRIALYSKAEKVFI 423 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~li~~~~~~~------~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 423 (603)
|+...+. .++...|+..|..|...- .....+.+|+.....+ ..+ ...-|..+.-.++...... ..-.
T Consensus 305 ~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r---~~a~ 379 (568)
T KOG2396|consen 305 YEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR---EVAV 379 (568)
T ss_pred HHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh---HHHH
Confidence 4444332 244555666666665432 2334455555554432 222 2234444444444443322 2222
Q ss_pred HHHHcCCCcCHhhHHHHHHHHHccC-CHH-HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-HHH-HHH-HHHHHHhC
Q 007461 424 EMQQKGFDKCVVAYSSMVAMYGKTG-RIR-DAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN-LRQ-VEK-LWKEMERR 498 (603)
Q Consensus 424 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~-a~~-~~~~m~~~ 498 (603)
.+...++..+...|-.-+....+.. +++ .-.+.+......-..+-...|+... .|+ ++. .+. ++.....
T Consensus 380 ~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s- 453 (568)
T KOG2396|consen 380 KLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS- 453 (568)
T ss_pred HhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH-
Confidence 2222233445555555554444321 211 1122233333322233444444443 222 111 111 2222222
Q ss_pred CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhC-CCCCC
Q 007461 499 KVTPDKVSY-TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS---KLSQIEELVKLLQDMKSE-GTKLD 573 (603)
Q Consensus 499 ~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~-g~~~~ 573 (603)
-..|+..++ +.+++-+...|-.++|...+..+... +.|....|..+|..-. .+| ...+.+.++.|... | .|
T Consensus 454 ~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d 529 (568)
T KOG2396|consen 454 VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--AD 529 (568)
T ss_pred hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CC
Confidence 235566654 55667777788888888888888765 3456667777766332 334 67778888887765 4 67
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 574 ERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 574 ~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
...|...+.-=..+|..+.+-.++.+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHH
Confidence 77888777766677877776665544
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.59 E-value=41 Score=29.20 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHH-----HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-
Q 007461 434 VVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSL-----MDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY- 507 (603)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~- 507 (603)
...|..++.... .+.. +.....+++... +...+|..+ ...+...|++++|+.-++..... +-| ..+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~D-e~lk 125 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKD-ENLK 125 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chh-HHHH
Confidence 344555555443 3333 455555566543 223333322 34577788999999888887643 222 223
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 007461 508 ----TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG 569 (603)
Q Consensus 508 ----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 569 (603)
-.|.+.....|.+|+|+..++.....++ .......-.+.+...|+-++|..-|+...+.+
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 2344556678899999999887766543 23344566778888999999999999888774
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.22 E-value=0.79 Score=37.96 Aligned_cols=82 Identities=7% Similarity=0.067 Sum_probs=40.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 007461 406 INAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485 (603)
Q Consensus 406 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 485 (603)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4444555556666666666665444445566666666666665555555555411 112223344455555555
Q ss_pred HHHHHHHHH
Q 007461 486 RQVEKLWKE 494 (603)
Q Consensus 486 ~~a~~~~~~ 494 (603)
+++.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555544444
No 330
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.85 E-value=1.7e+02 Score=35.94 Aligned_cols=311 Identities=9% Similarity=0.006 Sum_probs=161.3
Q ss_pred HHHhhhhhcCcHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 007461 191 SAMGGYNKLHMYYSTILVYEKM----KSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILC 266 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li 266 (603)
.+..+-.+.+.+.+|+..++.- ++.. .....|..+...|+..+++|....+....... + .....|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~------sl~~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---P------SLYQQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---c------cHHHHH
Confidence 5556667888899999988873 2221 12234455556999999999888777641111 1 245566
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCC
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCL-KLVLMYIEEGL 344 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~ 344 (603)
......|+++.|...|+.+.+. .|+ ..+++.++......|.++...-..+-..... .+....++ .=+.+--+.++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcc
Confidence 7778899999999999999876 444 6678877777777787777666444433321 22222232 23344467777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHH--HHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007461 345 VEKTLDVVESMKNAKLKISDCISCAI--VNGFSKRRG--YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEK 420 (603)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 420 (603)
++....... +.+.. +|... ...+.+... .-.-.+..+.+++.-+. -+.+|+..|.+..+.+
T Consensus 1534 wD~~e~~l~---~~n~e----~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~ 1598 (2382)
T KOG0890|consen 1534 WDLLESYLS---DRNIE----YWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYE 1598 (2382)
T ss_pred hhhhhhhhh---ccccc----chhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHH
Confidence 777665554 22221 23322 222222211 11111222222221111 1112222222222222
Q ss_pred HHHHH---------HH--cCCCcC------HhhHHHHHHHHHccCCHHHHHHHHHH-HHHcCCCC-----CHhHHHHHHH
Q 007461 421 VFIEM---------QQ--KGFDKC------VVAYSSMVAMYGKTGRIRDAMWLVAK-MKAKGCEP-----NVWIYNSLMD 477 (603)
Q Consensus 421 ~~~~~---------~~--~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~p-----~~~~~~~li~ 477 (603)
+.-++ .+ .+..++ ..-|-.-+..-....+..+-+--+++ +......| -..+|-...+
T Consensus 1599 ~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAr 1678 (2382)
T KOG0890|consen 1599 ILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSAR 1678 (2382)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 21111 00 011111 11222222111111111111111111 11111122 2456777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
...+.|.++.|...+-+..+.+ .| ..+--...-....|+...|+.++++..+.
T Consensus 1679 iaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1679 IARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8888999999988777766554 33 34445566677889999999999988754
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.52 E-value=44 Score=29.00 Aligned_cols=92 Identities=8% Similarity=-0.053 Sum_probs=47.6
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSAGIVL--DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLG 270 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 270 (603)
...+...+++++|..-++.....-..- ...+-..|.+.....|.+|+|..+++.....+..+ .....-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~-----~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA-----IVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH-----HHHHHhhhHHH
Confidence 445566666666666666554321000 01112234455556666677766666555544332 11223345566
Q ss_pred ccCCHHHHHHHHHHHHHCC
Q 007461 271 KSGRAFEALKFFRDMKEKG 289 (603)
Q Consensus 271 ~~g~~~~A~~~~~~m~~~g 289 (603)
..|+-++|..-|...+..+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6666666666666665553
No 332
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.36 E-value=66 Score=30.97 Aligned_cols=43 Identities=7% Similarity=-0.055 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 173 TLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.++++..+.++.+...+...+..+.+....++..+.++++...
T Consensus 52 silerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 52 SILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 333
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.19 E-value=37 Score=27.94 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHhhHHHH
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGC-----IPGQVTYASIINAYCRIAL-YSKAEKVFIEMQQKGFDKCVVAYSSM 440 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (603)
.|.++......+++...+.+++.+..... ..+...|.+++.+.++..- ---+..+|..|++.+.+.+...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45566666666666666666655532110 1234456667776655554 33456666666666666777777777
Q ss_pred HHHHHcc
Q 007461 441 VAMYGKT 447 (603)
Q Consensus 441 i~~~~~~ 447 (603)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766553
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.11 E-value=1.1e+02 Score=33.33 Aligned_cols=227 Identities=10% Similarity=-0.038 Sum_probs=121.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 007461 338 MYIEEGLVEKTLDVVESMKNAKLKISDC-------ISCAIVN-GFSKRRGYWAAVKVYEQLISQ----GCIPGQVTYASI 405 (603)
Q Consensus 338 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l 405 (603)
......++++|..++.+....-..|+.. .|+.+-. .....|++++|+++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4456788999999988876543332221 2333322 233468889998888776653 123445566677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH---HH--HHHHHccCCHH--HHHHHHHHHHHc-----CC-CCCHhHH
Q 007461 406 INAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS---SM--VAMYGKTGRIR--DAMWLVAKMKAK-----GC-EPNVWIY 472 (603)
Q Consensus 406 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~g~~~--~A~~~~~~m~~~-----~~-~p~~~~~ 472 (603)
..+..-.|++++|..+..+..+..-..+...+. .+ ...+...|+.. +.+..|...... .. .+-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777778899999998887766542222333332 22 22344566333 223333333221 00 1223455
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHH
Q 007461 473 NSLMDMHGRAK-NLRQVEKLWKEMERRKVTPDKVS--YTTVISAYNRAREFDMCVKFYNEFRMNGGVI----DRAIAGIM 545 (603)
Q Consensus 473 ~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l 545 (603)
..++.++.+.. ...++..-+.--......|-... +..|+......|++++|...++++......+ +-......
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 55556665521 12222222222222112222222 2366777788899999999998886543332 22222222
Q ss_pred HH--HHHccCCHHHHHHHHHH
Q 007461 546 VG--VFSKLSQIEELVKLLQD 564 (603)
Q Consensus 546 ~~--~~~~~g~~~~A~~~~~~ 564 (603)
+. .....|+.+++.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 33457888777776655
No 335
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.07 E-value=59 Score=30.25 Aligned_cols=137 Identities=9% Similarity=0.115 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007461 449 RIRDAMWLVAKMKA-KGCEPNVWIYNSLMDMHGR-AK-NLRQVEKLWKEMER-RKVTPDKVSYTTVISAYNRAREFDMCV 524 (603)
Q Consensus 449 ~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~ 524 (603)
.+.+|+++|+...- ..+--|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..++|.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455555552211 1233455556666665554 21 22222333333322 234556666777788888888888888
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHH
Q 007461 525 KFYNEFRMN-GGVIDRAIAGIMVGVFSKLSQIEELVKLLQD-----MKSEGTKLDERLYHSAMNALR 585 (603)
Q Consensus 525 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----m~~~g~~~~~~~~~~ll~a~~ 585 (603)
++++..... +..-|...|..+|+.....|+..-..+++++ +.+.|+..+...-..+-+.+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 888776655 5556777788888888888887665555543 223345555555555444443
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.95 E-value=32 Score=31.62 Aligned_cols=85 Identities=12% Similarity=0.171 Sum_probs=57.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 007461 476 MDMHGRAKNLRQVEKLWKEMERR--KVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS--- 550 (603)
Q Consensus 476 i~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 550 (603)
|.+++..+++.++....-+.-+. .++|...-..++ .|.+.|.+..+.++-......--.-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67888888888887765554321 345544444444 47888999988888888776533334445777666655
Q ss_pred --ccCCHHHHHHHH
Q 007461 551 --KLSQIEELVKLL 562 (603)
Q Consensus 551 --~~g~~~~A~~~~ 562 (603)
-.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 469999998887
No 337
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.21 E-value=40 Score=27.77 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGG-----VIDRAIAGIMVGVFSKLSQ-IEELVKLLQDMKSEGTKLDERLYHSA 580 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l 580 (603)
.+.++.-....+++...+.+++.+..... ..+...|.+++.+.++..- ---+..+++-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555556655555555532110 1244456666666655444 33455666666666667777777777
Q ss_pred HHHHHhcCc
Q 007461 581 MNALRDAGL 589 (603)
Q Consensus 581 l~a~~~~g~ 589 (603)
+.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 776665433
No 338
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.61 E-value=77 Score=30.81 Aligned_cols=67 Identities=6% Similarity=0.070 Sum_probs=47.1
Q ss_pred CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP---NVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 431 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 497 (603)
.....+|..+++.+.+.|+++.|...+.++...+... .....-.-.+..-..|+..+|...+++..+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445678888888888999998888888887643111 233334445666677888888888888776
No 339
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.42 E-value=88 Score=31.39 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=29.8
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 007461 282 FRDMKEKGILEDPSI--YASLICSFASITEVKLAEELFKEAEEKGMLRDPE--VCLKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 282 ~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~ 353 (603)
++.+.+.|..|+... ..+.+..++..|+.+-+.. +.+.|..++.. .....+...+..|+.+.+..+++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~----Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKL----LMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 334444555554322 2233444445666554333 33344333221 11123444556677666555544
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.28 E-value=4.8 Score=21.57 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=8.1
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 007461 227 IMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 227 ll~~~~~~g~~~~a~~~~ 244 (603)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444443
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.81 E-value=1.5e+02 Score=33.61 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCChHHH
Q 007461 343 GLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI----INAYCRIALYSKA 418 (603)
Q Consensus 343 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~g~~~~a 418 (603)
++++.|+..+..+.. ..|.-.++.--+.|.+.+|+.++ .|+...+..+ .+.+.....+++|
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH
Confidence 456666655555441 12334444445566666666655 3555544444 3444556677777
Q ss_pred HHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 419 EKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI--YNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
--.|+..-+. .--+.+|-.+|++.+|+.+..++... -+... -..|..-+...+++-+|-++..+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 7666654322 23356677778888888887776531 12221 2456667777888888888888776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 497 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.. | .-.+..|++...|++|.++.....
T Consensus 1027 sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 SD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred cC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 42 1 122334555556777777665443
No 342
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.02 E-value=32 Score=29.85 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHccCChHHHHHHHHHHHhcCCcc-----hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 161 SCVRARKFKIANTLLQVFITDGEIA-----LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
-+.+.|++++|..-|...+..-++. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 3556788888888888777765532 233444455666777777777766666664321 1122223344566666
Q ss_pred CHHHHHHHHHHHHhCCC
Q 007461 236 DSEKVAALFLECKSRKL 252 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~ 252 (603)
.+++|++=|+.+.+.++
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 66666666666666554
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.75 E-value=46 Score=30.68 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK---- 446 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 446 (603)
|.+++..+++.+++...-+--..--+.........|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5556666666665554433322111112233344444566667666666666655544223333446665555543
Q ss_pred -cCCHHHHHHHH
Q 007461 447 -TGRIRDAMWLV 457 (603)
Q Consensus 447 -~g~~~~A~~~~ 457 (603)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46677776665
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.44 E-value=8.9 Score=21.84 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=18.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 541 IAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566667777777777777776654
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.23 E-value=6.2 Score=22.23 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=5.8
Q ss_pred HcCCHHHHHHHHHHH
Q 007461 233 KIGDSEKVAALFLEC 247 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~ 247 (603)
+.|+.++|.+.|+++
T Consensus 12 ~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHH
Confidence 333333333333333
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=74.09 E-value=18 Score=34.14 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=27.6
Q ss_pred HhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 90 MLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFK 144 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 144 (603)
+.+++.+.+ |+++|...+... +.|+.++.....+|.+...+..|..=.+...
T Consensus 107 yFKQgKy~E-AIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 107 YFKQGKYEE-AIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhccchhH-HHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555 666665555431 2255555555566666655555554444443
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.87 E-value=7.6 Score=24.27 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=10.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 007461 546 VGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 546 ~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444455555555555555443
No 348
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.74 E-value=73 Score=29.46 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 007461 544 IMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 544 ~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
-++..+.+.|++.+|+.++..+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 46778888999999888765443
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.13 E-value=1.5e+02 Score=32.42 Aligned_cols=227 Identities=11% Similarity=-0.051 Sum_probs=121.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHH-HHHhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 007461 230 AYYKIGDSEKVAALFLECKSRKLDSTPF----STHMYKILC-DSLGKSGRAFEALKFFRDMKEK----GILEDPSIYASL 300 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l 300 (603)
.....+++++|..+..++...-..+... -...|+.|- ......|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3446788999999988876543332111 112355443 3345578889999888777654 223345556666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHcCCHH--HHHHHHHHHHhC---CCC---CCHhhH
Q 007461 301 ICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV-----LMYIEEGLVE--KTLDVVESMKNA---KLK---ISDCIS 367 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~--~a~~~~~~~~~~---~~~---~~~~~~ 367 (603)
..+..-.|+.++|..+.+...+..-..+...+..+. ..+...|+.. +....|...... ... +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777777899999999988877764333444333222 2345566332 233333333222 111 112234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCc----CHhhH
Q 007461 368 CAIVNGFSKRRGYWAAVKVYEQ----LISQGCIPGQVTY--ASIINAYCRIALYSKAEKVFIEMQQKGFDK----CVVAY 437 (603)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~ 437 (603)
..++.++.+ .+.+..-... -......|-...+ ..++......|+.++|...++++......+ +-..-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 3333322222 2222212222222 256677778899999999998887643222 21111
Q ss_pred HHHHH--HHHccCCHHHHHHHHHH
Q 007461 438 SSMVA--MYGKTGRIRDAMWLVAK 459 (603)
Q Consensus 438 ~~li~--~~~~~g~~~~A~~~~~~ 459 (603)
...+. .....|+.+.+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 12222 22346777777766655
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.00 E-value=81 Score=29.36 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=29.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 438 SSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 495 (603)
+.....|..+|.+.+|.++.++..... +.+...|-.|+..+...|+--.+.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344445555666666666555555431 334455555555566666554444444444
No 351
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.90 E-value=96 Score=30.15 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILE---DPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
.+|..++..+.+.|+++.|...+..+...+... +......-.+..-..|+..+|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355555666666666666666665555432111 122222333344445555555555555554
No 352
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.71 E-value=1.3e+02 Score=31.73 Aligned_cols=62 Identities=8% Similarity=0.113 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 398 GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 398 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
+...-..++..|.+.|..+.+.++.+.+-..-. ...-|..-+.-+.++|+......+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555666677777777777777666544321 12334555555566666655555444444
No 353
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.70 E-value=1.4e+02 Score=32.03 Aligned_cols=266 Identities=11% Similarity=0.059 Sum_probs=137.5
Q ss_pred hCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhh
Q 007461 109 KLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLA 188 (603)
Q Consensus 109 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (603)
+.++.+.....-..-+..+.+.+++...+..+.. .+.+.........+....|+.++|....+.+=..+...+..
T Consensus 91 ~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~ 165 (644)
T PRK11619 91 ANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNA 165 (644)
T ss_pred HCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChH
Confidence 3334343444444556666777787777663321 14455555566677777888777776666665556666777
Q ss_pred HHHHHhhhhhcCcHHHH--HHHHHHHHhCCCCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCC
Q 007461 189 FNSAMGGYNKLHMYYST--ILVYEKMKSAGIVLDSGCYCQIMEAYYK------------IGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 189 ~~~l~~~~~~~~~~~~a--~~~~~~m~~~~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~ 254 (603)
.+.++..+.+.|..... .+-++.....| +...-..+...+.. ..+...+..++.. ..+
T Consensus 166 cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~ 237 (644)
T PRK11619 166 CDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGP 237 (644)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCC
Confidence 77777777766554332 22222222222 11122222221100 0111111111111 111
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 007461 255 TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG-ILEDP--SIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEV 331 (603)
Q Consensus 255 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 331 (603)
+..+.......+.-+ ...+.+.|..++....... ..++. .....+.......+...++...++...... .+...
T Consensus 238 ~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~ 314 (644)
T PRK11619 238 TDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSL 314 (644)
T ss_pred ChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHH
Confidence 110011111111222 3455688888888775442 22222 223333333333322455566655543322 24455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLI 391 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 391 (603)
...-+....+.++++.+...+..|....- -...-..-+..++...|+.++|..+|+++.
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55556666689999999999888865432 233344556777777899999999998874
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.51 E-value=35 Score=29.21 Aligned_cols=110 Identities=11% Similarity=0.113 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCH-HHHHHHHHHHHhcC--
Q 007461 450 IRDAMWLVAKMKAKGCEPNVW---IYNSLMDMHGRAKNLRQVEKLWKEMERR-----KVTPDK-VSYTTVISAYNRAR-- 518 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~-~~~~~li~~~~~~g-- 518 (603)
++.|.+..+.-...+ +.|.. -|...+.-++......++.+++++.+.. .+.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 344555555433321 22332 2333344444455555666666665432 244554 45555555554432
Q ss_pred --C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 519 --E-------FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 519 --~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
+ +++|.+.|++..+ ..|+...|+.-++.. .+|-++..++.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 2 2333333333333 245556665555433 2344555554444
No 355
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.49 E-value=9.7 Score=21.69 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666666666666666666666554
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.93 E-value=72 Score=28.31 Aligned_cols=75 Identities=4% Similarity=-0.060 Sum_probs=53.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC--CCCChhhHHHHHH
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG--IVLDSGCYCQIME 229 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~ 229 (603)
.+..++.+.+.+++.+++...+.-.+..|.+...-..+++.|+-.|++++|..-++..-+.. ..+-..+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455667778888888888888777778888888888888888888888887666555432 2233445555554
No 357
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.75 E-value=6.7 Score=22.09 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=8.6
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 007461 443 MYGKTGRIRDAMWLVAKMKA 462 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~ 462 (603)
++.+.|++++|.+.|+++.+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 33344444444444444443
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.47 E-value=27 Score=27.67 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=23.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 139 LSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
-+..+...++.|++......+++|.+-+|+..|.++|+-+...
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444455555555555555555555665555555555443
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.45 E-value=38 Score=24.90 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHHH
Q 007461 235 GDSEKVAALFLECK 248 (603)
Q Consensus 235 g~~~~a~~~~~~~~ 248 (603)
|+.+.|+++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.07 E-value=1e+02 Score=29.70 Aligned_cols=79 Identities=9% Similarity=-0.081 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc---CcHHHHHHHH
Q 007461 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL---HMYYSTILVY 209 (603)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 209 (603)
.+.-+.+++++.+.+ +.+...+...+..+.+..+.+...+.++.+....+.+...|...+...... -.+.....+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 456677888887775 566777788888888888888888889999888888888888887765542 2344555544
Q ss_pred HHH
Q 007461 210 EKM 212 (603)
Q Consensus 210 ~~m 212 (603)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 443
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.59 E-value=28 Score=32.84 Aligned_cols=94 Identities=9% Similarity=0.001 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
.+-|.+.|.+++|+..|....... +-+.+++..-..+|.+..++..|+.=.......+..-+.+|.--+.+--..|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 345788999999999998876543 2378888878888888888877766655555544334444554444444556666
Q ss_pred HHHHHHHHHHhCCCCCC
Q 007461 204 STILVYEKMKSAGIVLD 220 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~ 220 (603)
+|.+-++..++. .|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 666666665553 454
No 362
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.87 E-value=1.5e+02 Score=31.19 Aligned_cols=82 Identities=15% Similarity=0.011 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHH--hh-hhhcCcHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHHcC--
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAM--GG-YNKLHMYYSTILVYEKMKS-------AGIVLDSGCYCQIMEAYYKIG-- 235 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~g-- 235 (603)
...+.+.++.....+..........+ .+ +....+.+.|+.+|....+ .| ++....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666666655543222222222 22 4456677777777776655 33 2223444455554432
Q ss_pred ---CHHHHHHHHHHHHhCCC
Q 007461 236 ---DSEKVAALFLECKSRKL 252 (603)
Q Consensus 236 ---~~~~a~~~~~~~~~~~~ 252 (603)
+.+.|..++......+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~ 324 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN 324 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC
Confidence 44556666655555444
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.34 E-value=15 Score=28.94 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 521 DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMN 582 (603)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 582 (603)
-+..+-++.+..-++.|++.+...-+.++.+.+++..|+++++-.+.+ +.+....|-.+++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 355666677777778888888888888888899999999998888765 3333334655554
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.30 E-value=12 Score=23.37 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIY 146 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~ 146 (603)
|..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666665543
No 365
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.95 E-value=88 Score=31.40 Aligned_cols=125 Identities=13% Similarity=0.073 Sum_probs=52.1
Q ss_pred CCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHhcCC-cch
Q 007461 112 EFRPEKST--LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAH--TCSRLVASCVRARKFKIANTLLQVFITDGE-IAL 186 (603)
Q Consensus 112 ~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 186 (603)
|..|+... ....+...+..|+.+-+.-+ .+.|..|+.. .....+...+..|+.+.+..+++.-..... .+.
T Consensus 25 g~~~n~~~~~g~tpL~~A~~~~~~~~v~~L----l~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 100 (413)
T PHA02875 25 GINPNFEIYDGISPIKLAMKFRDSEAIKLL----MKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYK 100 (413)
T ss_pred CCCCCccCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccC
Confidence 44444322 23345555667776544333 3344434321 111233444556776665555543111000 011
Q ss_pred hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHHcCCHHHHHHHHH
Q 007461 187 LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGC--YCQIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~ 245 (603)
.-. +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++
T Consensus 101 ~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 101 DGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred CCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 111 122222334443 34444455555544321 1233444556666665554443
No 366
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.16 E-value=1e+02 Score=28.70 Aligned_cols=60 Identities=7% Similarity=0.004 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHhhHHHHHHHHHccCCHHHHHHH
Q 007461 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMYGKTGRIRDAMWL 456 (603)
Q Consensus 397 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 456 (603)
++..+...++..+++.+++.+-.++++..... +...|...|..+|+...+.|+..-..++
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 33334444444444444444444444443332 2233444444444444444444433333
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.18 E-value=90 Score=28.17 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=67.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHH
Q 007461 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWI-YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS-YTTVISAYNRAREFD 521 (603)
Q Consensus 444 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~ 521 (603)
|....+++.|...+.+.+. +.|++.+ |..=+-.+.+..+++.+..--.+.++ +.||.+- ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4455667777776665554 3666644 34445566667777777666666553 4566543 334445555666777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 522 MCVKFYNEFRM----NGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 522 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
+|+..+.+..+ ..+.+...++..|..+--..-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 77777776632 333444455666655544444444555555444
No 368
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.28 E-value=2.2e+02 Score=31.62 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH--HHHHHHHHHHHHCCCCCCHHHHHH-
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA--FEALKFFRDMKEKGILEDPSIYAS- 299 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~- 299 (603)
-|..|+..|...|+.++|.++|.+........+..-...+..+++.+.+.+.. +-.++.-++..+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36677777777777777777777766543111111112233355555554443 444444444433211100001110
Q ss_pred -----------HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007461 300 -----------LICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 300 -----------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
.+-.+......+.+...++.+....-..+....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 111223344455555566665555444455555555555543
No 369
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.96 E-value=1.2e+02 Score=28.49 Aligned_cols=72 Identities=11% Similarity=0.264 Sum_probs=38.9
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007461 269 LGKSGRAFEALKFFRDMKEKGILEDPS----IYASLICSFASITEVK-LAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG 343 (603)
Q Consensus 269 ~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 343 (603)
..+...+++.....++-.+..--|+.. .|..++++--...+-+ -|.+.++. ...|..|+.+++..|
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQG 335 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCC
Confidence 334445666666654433333345543 4666666654332211 13333332 345778888888888
Q ss_pred CHHHHH
Q 007461 344 LVEKTL 349 (603)
Q Consensus 344 ~~~~a~ 349 (603)
+.+-.+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877554
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.04 E-value=23 Score=25.38 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKF 526 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~ 526 (603)
+..++.+|+..|++++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.62 E-value=26 Score=25.15 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=20.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCcHHHHHH
Q 007461 551 KLSQIEELVKLLQDMKSEGTKLD--ERLYHSAMNALRDAGLQMQAQW 595 (603)
Q Consensus 551 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~a~~~~g~~~~a~~ 595 (603)
...+.++|+..|+...+.-..+. ..++..|+.|+...|++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444322211 2344444555555555554443
No 372
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.23 E-value=43 Score=25.98 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 542 AGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
|..++..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66777777778888888888877766
No 373
>PRK10941 hypothetical protein; Provisional
Probab=64.23 E-value=1e+02 Score=28.75 Aligned_cols=80 Identities=6% Similarity=0.033 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE-GTKLDERLYHSAMNALR 585 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~a~~ 585 (603)
.+.+-.+|.+.++++.|+++.+.+....+. |+.-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 445566777888888888888888775433 4555555666677888888888877777654 34466666666666665
Q ss_pred hc
Q 007461 586 DA 587 (603)
Q Consensus 586 ~~ 587 (603)
..
T Consensus 263 ~~ 264 (269)
T PRK10941 263 QK 264 (269)
T ss_pred hc
Confidence 43
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.02 E-value=1.2e+02 Score=27.84 Aligned_cols=280 Identities=13% Similarity=0.104 Sum_probs=151.8
Q ss_pred CCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C
Q 007461 289 GILEDPSIYASLICSF-ASITEVKLAEELFKEAEEKGMLRDPE---VCLKLVLMYIEEGLVEKTLDVVESMKNA-----K 359 (603)
Q Consensus 289 g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 359 (603)
+-.||+..=+..-++- .+..++++|..-|+++++........ ....++..+.+.|++++..+.+.++... .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4466655433322221 23457889999999888764333333 3445677888899999888888877531 1
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----
Q 007461 360 LKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS----QG-CIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF---- 430 (603)
Q Consensus 360 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---- 430 (603)
-.-+..+.|+++.....+.+.+-...+|+.-.+ .. -..--.|-.-+...|...|.+.+..++++++.+.--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 112444566777666666666655555543222 11 011112334566667777888888888888875410
Q ss_pred CcC-------HhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHH--
Q 007461 431 DKC-------VVAYSSMVAMYGKTGRIRDAMWLVAKMKAK-GCEPNVWIYNSLMDM-----HGRAKNLRQVEKLWKEM-- 495 (603)
Q Consensus 431 ~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m-- 495 (603)
..| ...|..-|++|....+-.+...++++...- .-.|.+.+.. .|+- ..+.|.+++|-.-|-+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 111 456777788888888888888888876542 2345544443 3333 34567787776544333
Q ss_pred --HhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 496 --ERRKVTPDKVS---YTTVISAYNRAREFDMCVKFYNEFRMNGG--VIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 496 --~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
-+.| .|...+ |..|...+.+.|- .-|+.-..... .|.......++.+|.+ +++.+-.++++.-.+
T Consensus 260 NYDEsG-spRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~- 331 (440)
T KOG1464|consen 260 NYDESG-SPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS- 331 (440)
T ss_pred cccccC-CcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-
Confidence 2233 233333 4444555554431 00111011112 2344456777877754 455555555544332
Q ss_pred CCCCCHHHH
Q 007461 569 GTKLDERLY 577 (603)
Q Consensus 569 g~~~~~~~~ 577 (603)
.+..|+.+-
T Consensus 332 ~IM~DpFIR 340 (440)
T KOG1464|consen 332 NIMDDPFIR 340 (440)
T ss_pred cccccHHHH
Confidence 344444443
No 375
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.51 E-value=28 Score=22.21 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=20.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 551 KLSQIEELVKLLQDMKSEGTKLDERLYHSAMN 582 (603)
Q Consensus 551 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 582 (603)
+.|-..++..++++|.+.|+..+...+..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45566666666666666666666666665553
No 376
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.26 E-value=1.2e+02 Score=27.18 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 007461 507 YTTVISAYNRARE-------FDMCVKFYNEFRMNGGVI----D-RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT 570 (603)
Q Consensus 507 ~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 570 (603)
+.-+...|...|+ +..|.+.|.+..+....| + ....-.+.....+.|+.++|.+.|.++...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 4444455555555 344666666665543221 2 22344566677789999999999999987643
No 377
>PRK10941 hypothetical protein; Provisional
Probab=61.95 E-value=94 Score=28.94 Aligned_cols=54 Identities=7% Similarity=-0.010 Sum_probs=26.9
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHH
Q 007461 160 ASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMK 213 (603)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 213 (603)
.+|.+.++++.|..+.+.+....|.++.-+---.-.|.+.|.+..|..=++..+
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 344445555555555555555544444444444444555555555555444443
No 378
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.51 E-value=30 Score=30.33 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIY 146 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 146 (603)
.....+++.+.-...|++.+|..++..+...|+.++|.++.+++...
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33344444433334566666666666666666666666666666544
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.08 E-value=66 Score=23.94 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=26.8
Q ss_pred hcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCC
Q 007461 180 TDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 236 (603)
..+|.|..+.-.+...+...|++++|++.+-.+++..... +...-..|+..+.-.|.
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3344555555566666666666666666665555543222 22333444444444443
No 380
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.60 E-value=65 Score=23.72 Aligned_cols=65 Identities=6% Similarity=0.009 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 007461 171 ANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 171 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 240 (603)
+.++++.+.+.+..+..-...+-.+-...|+.+.|.+++..+. +|.. .|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhh
Confidence 4445555555554444444444433334556666666666665 4332 555566666555554433
No 381
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.08 E-value=1.5e+02 Score=27.49 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=21.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 401 (603)
+.+-..+.+++++|+..+.++...|+..|..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 44556667777777777777777776655543
No 382
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.80 E-value=1.7e+02 Score=27.86 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=8.7
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 007461 406 INAYCRIALYSKAEKVFIE 424 (603)
Q Consensus 406 l~~~~~~g~~~~a~~~~~~ 424 (603)
...||+.|+.+.|.+.+++
T Consensus 111 aeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 111 AEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 3344444544444444443
No 383
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.36 E-value=1.5e+02 Score=27.06 Aligned_cols=18 Identities=0% Similarity=-0.082 Sum_probs=10.6
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007461 515 NRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 515 ~~~g~~~~a~~~~~~~~~ 532 (603)
-..|+.++|.++.+...+
T Consensus 180 ei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HTSS-HHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 446777777777666543
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.00 E-value=58 Score=33.38 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=24.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 300 LICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359 (603)
Q Consensus 300 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 359 (603)
|.+...+.|-.-.|..++.+..... ...+-++-.+.++|....+++.|++.|++..+.+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 3333333343334444444333332 2233344444444444444444444444444433
No 385
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=57.07 E-value=60 Score=30.34 Aligned_cols=43 Identities=9% Similarity=0.400 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 490 KLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 490 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
++|+.+.+.++.|.-..+..+.-.+.+.=.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 5566666666666666665555555666666666666666654
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.83 E-value=38 Score=23.05 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=13.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
.-.+|.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555555544
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.51 E-value=2.1e+02 Score=28.06 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=44.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHh
Q 007461 511 ISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS-KLSQIEELVKLLQDMKS 567 (603)
Q Consensus 511 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 567 (603)
+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4567788999999999999888777667777777777665 67888888888887654
No 388
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.75 E-value=3.3e+02 Score=29.95 Aligned_cols=352 Identities=11% Similarity=0.042 Sum_probs=163.1
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKSAGIVLDS--GCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSL 269 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 269 (603)
+-..|...|++++|+++-+.- |+. .++..-.+.|.+.+++..|.+++-++.. .+..+.--+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~-----------~FEEVaLKF 426 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS-----------SFEEVALKF 426 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-----------hHHHHHHHH
Confidence 345667788888888765422 332 2344455677788889999888877622 255555556
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHH-ccCCHH----HHHHHHHH--------HHHc-CCCCCHH
Q 007461 270 GKSGRAFEALKFFRDMKEKGILEDPSIYAS-----LICSFA-SITEVK----LAEELFKE--------AEEK-GMLRDPE 330 (603)
Q Consensus 270 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----ll~~~~-~~g~~~----~a~~~~~~--------~~~~-~~~~~~~ 330 (603)
....+.+ +++.|-.=+-..++|...+-.. ++..+. +.++++ ++.+-++. +... ....+..
T Consensus 427 l~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~ 505 (911)
T KOG2034|consen 427 LEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDEL 505 (911)
T ss_pred HhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 6666655 5544422222224444333222 333332 222222 22222211 1111 0111222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 007461 331 VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ-VTYASIINAY 409 (603)
Q Consensus 331 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~ 409 (603)
...+........|+.++...+-.-+.+ |..++.-+.+.+.+++|++++..-. .|.. .-|...
T Consensus 506 nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~----~~el~yk~ap~---- 568 (911)
T KOG2034|consen 506 NRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR----NPELFYKYAPE---- 568 (911)
T ss_pred hHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc----chhhHHHhhhH----
Confidence 333444555666777776665555543 6677788888888888887776531 1111 011111
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 007461 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT---GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLR 486 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 486 (603)
.....+.+....+...... ........++..+.+. .....+...++-....--.-+...+|.++..|++..+-+
T Consensus 569 Li~~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 569 LITHSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred HHhcCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 1112233333333332222 1122333344444433 223344444444333322346677777777777665433
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCH------------------HHH
Q 007461 487 QVEKLWKEMERRKVTPDKVSYTTVISAYNRARE------FDMCVKFYNEFRMNGGVIDR------------------AIA 542 (603)
Q Consensus 487 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~------------------~~~ 542 (603)
.-..+-..+...+ . ..+-....++.|.+.+. +..+.++|.++++.-...|. ..|
T Consensus 646 ll~~le~~~~~~~-~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d~dlak~~A~~~ee~e~lrKkLW 723 (911)
T KOG2034|consen 646 LLLYLEIIKFMKS-R-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFDIDLAKVIANDPEEDEDLRKKLW 723 (911)
T ss_pred hHHHHHHHhhccc-c-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcCHHHHhhhhcChhhHHHHHHHHH
Confidence 3222211111111 0 12223344555554432 33444444444433222221 123
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHH-----hC-CCCCCHHHHHHHHHH
Q 007461 543 GIMVGVFS-KLSQIEELVKLLQDMK-----SE-GTKLDERLYHSAMNA 583 (603)
Q Consensus 543 ~~l~~~~~-~~g~~~~A~~~~~~m~-----~~-g~~~~~~~~~~ll~a 583 (603)
-.+...+. ...+.++++..+++-. +. .+.||..+...+=.+
T Consensus 724 LkIAkh~v~~~~~ikk~i~~Lk~~~lLkiedlLpffpdf~~id~~kea 771 (911)
T KOG2034|consen 724 LKIAKHVVKQENDIKKAIRFLKENELLTIEDLLPFFPDFTKIDNLKEA 771 (911)
T ss_pred HHHHHHHHHhhccHHHHHHHhccCcccchhhhhccccchhhhhhhHHH
Confidence 33333333 3456778888877610 01 345776666655544
No 389
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.69 E-value=1.1e+02 Score=33.38 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=37.5
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007461 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCV 524 (603)
Q Consensus 445 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 524 (603)
..+|+++.|++.-.++- +..+|..|.....+.|+.+-|+..|++...- +.|--.|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHH
Confidence 34566666655544332 4556666666666666666666666655421 22222334445555555
Q ss_pred HHHHHH
Q 007461 525 KFYNEF 530 (603)
Q Consensus 525 ~~~~~~ 530 (603)
++.+.+
T Consensus 719 Km~~ia 724 (1202)
T KOG0292|consen 719 KMMKIA 724 (1202)
T ss_pred HHHHHH
Confidence 554443
No 390
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.61 E-value=3.8e+02 Score=30.62 Aligned_cols=24 Identities=8% Similarity=-0.115 Sum_probs=16.6
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
.+..+|...|...+|+..|.+...
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhh
Confidence 344457778888888888877643
No 391
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.84 E-value=2.5e+02 Score=28.41 Aligned_cols=107 Identities=9% Similarity=-0.009 Sum_probs=70.2
Q ss_pred HHHhcCCHHHHHHHHHHH---HhCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCHH--
Q 007461 478 MHGRAKNLRQVEKLWKEM---ERRK--VTPDK---VSYTTVISAYNRAREFDMCVKFYNEFRM-------NGGVIDRA-- 540 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m---~~~~--~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~-- 540 (603)
-+...|++.+|.+++... .+.| +.|.. ..||.|.-.+.+.|.+..+..+|.+..+ .|++|.+.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 355678889988887654 1222 22222 2246666666677777777777776653 35443321
Q ss_pred ---------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 541 ---------IAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRD 586 (603)
Q Consensus 541 ---------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~ 586 (603)
+|| ..-.|...|+.-.|.+-|.+.... +.-++..|..|..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233 334567889999999999888775 67788899999998864
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.76 E-value=34 Score=31.92 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=33.9
Q ss_pred CCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 113 FRPEKST-LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157 (603)
Q Consensus 113 ~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (603)
+.|+... |+..|....+.||.++|++++++..+.|+.--..+|-.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4466665 66889999999999999999999998886554445433
No 393
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.27 E-value=5.4e+02 Score=32.08 Aligned_cols=319 Identities=6% Similarity=-0.053 Sum_probs=165.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007461 226 QIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA 305 (603)
Q Consensus 226 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (603)
.+..+-.+++.+.+|...++.-.... .........|..+...|..-+++|...-+...-.. .| .....|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e-k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE-KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHH
Confidence 45556678899999999888741111 11111123344555589999998888777654211 12 2333444556
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCCHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISC-AIVNGFSKRRGYWAAV 384 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~ 384 (603)
..|++..|...++.+.+.+. +....++.++......|.++...-..+....... +....|+ .=+.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s-e~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS-EEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccC-HHHHHHHHHHHHHHhhhcchhhhh
Confidence 78999999999999988752 2366677777766677777777766555544332 1222222 2233335566666655
Q ss_pred HHHHHHHHcCCCCCHHHHHHH--HHHHHh--cCChHHHHHHHHHHHHc--------CCC-cCHhhHHHHHHHHHccCCHH
Q 007461 385 KVYEQLISQGCIPGQVTYASI--INAYCR--IALYSKAEKVFIEMQQK--------GFD-KCVVAYSSMVAMYGKTGRIR 451 (603)
Q Consensus 385 ~~~~~m~~~g~~p~~~~~~~l--l~~~~~--~g~~~~a~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~g~~~ 451 (603)
..+. .. +..+|... .....+ ..+.-.-.+..+.+.+. +.. .-...|..+++...-..
T Consensus 1539 ~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e--- 1608 (2382)
T KOG0890|consen 1539 SYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE--- 1608 (2382)
T ss_pred hhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH---
Confidence 5544 11 11222222 222221 12211111222222221 111 11234444444433211
Q ss_pred HHHHHHHHHHHcCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCCC-----HHHHHHHHHHHHhcCC
Q 007461 452 DAMWLVAKMKAKGCEPN------VWIYNSLMDMHGRAKNLRQVEKLWKE-MERRKVTPD-----KVSYTTVISAYNRARE 519 (603)
Q Consensus 452 ~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~p~-----~~~~~~li~~~~~~g~ 519 (603)
-....+... ++.++ ..-|..-+..-....+..+-+-.+++ +......|+ ..+|....+...+.|.
T Consensus 1609 -l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1609 -LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred -HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 111111111 12222 11222222211111122222222222 222112222 2468888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 007461 520 FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG 569 (603)
Q Consensus 520 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 569 (603)
++.|...+-.+.+.+ -+..+--..+.+...|+-..|+.++++..+..
T Consensus 1686 ~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999988877765 23344456677788999999999999988653
No 394
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=53.13 E-value=33 Score=18.18 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=9.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHH
Q 007461 263 KILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~m 285 (603)
..+...+...|++++|...|+..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333444444444444444333
No 395
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.74 E-value=1.7e+02 Score=26.18 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=61.0
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007461 465 CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP---DKVS--YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDR 539 (603)
Q Consensus 465 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 539 (603)
+.+...-+|.|+--|.....+.+|...|..-. |+.| |..+ -..-|......|++++|++..+.+-..-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 45666677777777777666666666665543 4444 3333 345566677888999888888876443333343
Q ss_pred HHH-----HHHHHHHHccCCHHHHHHHHHHHH
Q 007461 540 AIA-----GIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 540 ~~~-----~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
..+ ..+|. +.|.|..++|+++.+.=.
T Consensus 100 ~l~F~Lq~q~lIE-liR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIE-LIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHc
Confidence 222 23333 457788888888776543
No 396
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.73 E-value=1.2e+02 Score=31.40 Aligned_cols=102 Identities=7% Similarity=-0.064 Sum_probs=62.8
Q ss_pred ccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
..|+...|.+.+.......| ..-+..-.|...+.+.|....|-.++.+.+... ...+-++..+.++|.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 34777777777666655444 233344455556666666667777666655543 2345567777778888888888888
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLG 270 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~ 270 (603)
-|+......... .+.-+.|...-|
T Consensus 698 ~~~~a~~~~~~~----~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKC----PECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCC----hhhHHHHHHHHH
Confidence 887776655442 245555555444
No 397
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.67 E-value=2.5e+02 Score=28.03 Aligned_cols=26 Identities=15% Similarity=0.036 Sum_probs=20.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
.|-++.-|...|+..+|.+..+++..
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 45667778889999999888888754
No 398
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.44 E-value=2.1e+02 Score=27.14 Aligned_cols=61 Identities=8% Similarity=0.109 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 508 TTVISAYNRAREFDMCVKFYNEFRMNGGVIDR-AIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 508 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
..|.-+..+.|+..+|.+.++++.+.-.-... .+-..+++++....-+.+...++-+-.+.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444445779999999999988764221111 23456888888877777777776665543
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.01 E-value=68 Score=24.03 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=12.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 007461 265 LCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~m~ 286 (603)
+.......|++++|++.+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455566666666655554
No 400
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.96 E-value=97 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 88888888888888888888888876
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.83 E-value=35 Score=18.74 Aligned_cols=21 Identities=5% Similarity=-0.002 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhcCCcchhhH
Q 007461 169 KIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~ 189 (603)
+.+..+|+++....+.+...|
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 4 ERARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHH
Confidence 334444444443333333333
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.42 E-value=89 Score=27.30 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 326 LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 326 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
.|++.++..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666555555544
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.72 E-value=2.9e+02 Score=28.21 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007461 293 DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVN 372 (603)
Q Consensus 293 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 372 (603)
|.....+++..+.+.....-++.+..+|...| -+-..+..++..|... .-++-..+++++.+.+. +......-+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 55555666666666666666666666666554 2445555566666655 44455555555555544 2222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHhhHHHHHHHHHc
Q 007461 373 GFSKRRGYWAAVKVYEQLISQGCIP--G---QVTYASIINAYCRIALYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~~p--~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 446 (603)
.+...++...+..+|.+....-++. + ...|.-+... -..+.+....+...+... |...-...+.-+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333355555555555554332110 0 0112222211 123344444444444432 223333444444455555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 007461 447 TGRIRDAMWLVAKMKAK 463 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~ 463 (603)
..++.+|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55666666666655554
No 404
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.97 E-value=53 Score=32.78 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=60.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPD-AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
+..+...+.++.|..++.+.++.+ |+ ..-|..--.++.+.+++..|+.=+....+..+.....|---..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 344555666777777777777654 43 233333335566666666666655555555554444444445555566667
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 203 YSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
.+|+..|+.... +.|+..-....+.-|-
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 777777776655 4566655555555443
No 405
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.28 E-value=45 Score=31.18 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
|+..|....+.||+++|+.+++++.+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555554443
No 406
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.00 E-value=2.9e+02 Score=27.74 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007461 367 SCAIVNGFSK---RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA 413 (603)
Q Consensus 367 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 413 (603)
+..++.++.+ ..+.+.|+.++..|.+.|..|....-..++.++-..|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3344455544 3678888888888888877666555555555544443
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.97 E-value=1.3e+02 Score=25.95 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=12.1
Q ss_pred HhhhhhcCcHHHHHHHHHHHHh
Q 007461 193 MGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445555555555555555544
No 408
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.83 E-value=3.5e+02 Score=28.61 Aligned_cols=76 Identities=9% Similarity=-0.026 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007461 349 LDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQ 426 (603)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 426 (603)
....+.+..+-+..+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|...+.-+.+.|+......+-+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444443444555566677777777777777776665543211 12234444455555555554444444333
No 409
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.87 E-value=1.4e+02 Score=25.68 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 485 LRQVEKLWKEMERRKVTPDK--VSY-----TTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~~--~~~-----~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
++.|..+|+.+.+..-.|+. ... ...+..|.+.|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 55677777766554322211 111 2223356666666666666666655
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.62 E-value=1.3e+02 Score=24.39 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=41.1
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007461 114 RPEKSTLKLLIRYLVQSKK---WDSIVSLSEDFKIYNVLPDAHTCS-RLVASCVRARKFKIANTLLQVFITDGEI 184 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (603)
.++..+--.+.-++.++.+ ..+.+.+++++.+...+....-|. .|.-++.+.++++.++++.+.+.+..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4555555556666666543 456666777777533222223332 2334566777788887777777765543
No 411
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.26 E-value=2.6e+02 Score=26.66 Aligned_cols=164 Identities=16% Similarity=0.221 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007461 235 GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAE 314 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 314 (603)
++.+....++..+...+..| .|..|.. +..++.|...++.+..+ +...+++-.
T Consensus 36 ~~~~~~e~l~~~Ird~~Map------~Ye~lce-------------------~~~i~~D~~~l~~m~~~--neeki~eld 88 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP------LYEYLCE-------------------SLVIKLDQDLLNSMKKA--NEEKIKELD 88 (393)
T ss_pred cCHHHHHHHHHHHHhcccch------HHHHHHh-------------------hcceeccHHHHHHHHHh--hHHHHHHHH
Confidence 35556666777777776665 2443332 22344555555555443 222334444
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHHH-HHhcCCHHHHHHHHH
Q 007461 315 ELFKEAEEK-GMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA----KLKISDCISCAIVNG-FSKRRGYWAAVKVYE 388 (603)
Q Consensus 315 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~ 388 (603)
+..+...+. |-.--...+......||+-|+-+.|.+.+....++ |.+.|..-+.+-+.. |....-..+-++..+
T Consensus 89 ~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak 168 (393)
T KOG0687|consen 89 EKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAK 168 (393)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444433 21112344556677889999999998887765543 455554333322222 223333455666666
Q ss_pred HHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007461 389 QLISQGCIPGQ----VTYASIINAYCRIALYSKAEKVFIEMQQ 427 (603)
Q Consensus 389 ~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 427 (603)
.+.+.|...+. .+|..+- |....++.+|-.+|-+...
T Consensus 169 ~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 169 SLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 77777754432 2333332 3345677888887776654
No 412
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.92 E-value=83 Score=22.60 Aligned_cols=32 Identities=9% Similarity=0.370 Sum_probs=20.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 007461 544 IMVGVFSKLSQIEELVKLLQDMKSEGTKLDERL 576 (603)
Q Consensus 544 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 576 (603)
++++.+.++.--++|+++++-|.+.| ..+...
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~ 67 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEM 67 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 35556666777777777777777765 344433
No 413
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.35 E-value=84 Score=24.33 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=24.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 545 MVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRD 586 (603)
Q Consensus 545 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~ 586 (603)
+++.+.+|...++|+++++-|.+.| ..+...-..|-..+.+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4555667777777777777777766 4455544444444433
No 414
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.10 E-value=2.2e+02 Score=25.60 Aligned_cols=100 Identities=9% Similarity=0.038 Sum_probs=60.7
Q ss_pred CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHhH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007461 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP---NVWI--YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504 (603)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 504 (603)
+.+...-+|.||--|.-...+.+|.+.|.. +.|+.| |..+ =..-|......|+.++|++..+.+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 345555666666666666666666666644 334554 2222 244566778999999999999887543344454
Q ss_pred HHHHHHHH----HHHhcCCHHHHHHHHHHHH
Q 007461 505 VSYTTVIS----AYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 505 ~~~~~li~----~~~~~g~~~~a~~~~~~~~ 531 (603)
..+-.|.. -..+.|..++|+++.+.=.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 33322222 2346777888888776543
No 415
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.68 E-value=2.5e+02 Score=26.02 Aligned_cols=159 Identities=12% Similarity=0.063 Sum_probs=72.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 341 EEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK----VYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 341 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
+++++++|.+++.. -...+.+.++..-|.+ +++-..+.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~---------------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS---------------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHH---------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 45566666655432 2345666777655444 3444445566667666666666655543222
Q ss_pred -HHHHHHHHHHHc---C--CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 007461 417 -KAEKVFIEMQQK---G--FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490 (603)
Q Consensus 417 -~a~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 490 (603)
+-.++.+.+.+. + -.-++.....+...|.+.|++.+|+..|-.-. .|+...+..++.-....|...++
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~-- 140 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA-- 140 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--
Confidence 234444444432 1 11245566667777777777766665553221 12222222222222222222211
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 491 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
|...-..++ -|.-.++...|...++...+.
T Consensus 141 ------------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ------------DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222223 355567888888887776654
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.54 E-value=79 Score=20.15 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=18.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007461 516 RAREFDMCVKFYNEFRMNGGVIDRAIAGIMV 546 (603)
Q Consensus 516 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
+.|-.+++..++++|.+.|+..+...++.++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455566666666666666666665555444
No 417
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.28 E-value=3.1e+02 Score=26.95 Aligned_cols=65 Identities=6% Similarity=-0.067 Sum_probs=45.1
Q ss_pred chhhHHHH---HhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 007461 185 ALLAFNSA---MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY-KIGDSEKVAALFLECKS 249 (603)
Q Consensus 185 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~ 249 (603)
|...|.++ +..+.+.|.+..|+++..-+...+..-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444443 5567778888888888888887766657777777777765 66777777777776554
No 418
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.26 E-value=64 Score=21.96 Aligned_cols=28 Identities=11% Similarity=0.212 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 505 VSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
.---.+|.+|...|++++|.++++++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455555555555555555555443
No 419
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.13 E-value=1.9e+02 Score=26.40 Aligned_cols=57 Identities=7% Similarity=0.107 Sum_probs=29.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK-TGRIRDAMWLVAKMK 461 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 461 (603)
+...+.+.|+++++...++++...+...+..--+.+-.+|-. .|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 444555666666666666666666555555555555555532 344444555554444
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.99 E-value=3.2e+02 Score=27.13 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=9.8
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 007461 233 KIGDSEKVAALFLECKSR 250 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~ 250 (603)
+.+++..|.++|+.+..+
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 455555555555555544
No 421
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.58 E-value=1.1e+02 Score=25.23 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=30.0
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA 413 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 413 (603)
..+.+.|.+++. --..++..+.+.++.-.|.++++++.+.+...+..|.-..++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444444332 234455555555555556666666666554444444444444444444
No 422
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.40 E-value=1.4e+02 Score=22.76 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=27.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 372 NGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
..+...|++++|..+.+.+ +.||...+.++.. .+.|..++...-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445556666666555544 2455555544432 34555555555555555554
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.30 E-value=23 Score=28.44 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 007461 486 RQVEKLWKEMERRKVTPD 503 (603)
Q Consensus 486 ~~a~~~~~~m~~~~~~p~ 503 (603)
..|..+|++|++.|-+||
T Consensus 112 ~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CcHHHHHHHHHhCCCCCc
Confidence 344445555555554444
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.07 E-value=27 Score=28.03 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=19.0
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
.|.-..|..+|.+|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3445566777777777777766 45555543
No 425
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.53 E-value=40 Score=23.25 Aligned_cols=31 Identities=3% Similarity=-0.005 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN 147 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 147 (603)
...++.++...++..-.++++..+.++...|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444443
No 426
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.52 E-value=2.6e+02 Score=25.47 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHHHHHHHhhCCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKS-TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAH-TCSRLVASCVRARKFKIANTLLQV 177 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 177 (603)
|+..|.+++.. .|+.. -|..-+..+.+..+|+.+..=.....+. .|+.. ..-.+...+.....++.|+..+.+
T Consensus 29 ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 29 AIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred HHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 55555555543 34442 2444555555555555555444444333 23322 222233334444444555544444
Q ss_pred H
Q 007461 178 F 178 (603)
Q Consensus 178 ~ 178 (603)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 3
No 427
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.16 E-value=3.9e+02 Score=27.46 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 147 NVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 147 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
|+..+......+... ..|+...|+.+++++.
T Consensus 197 gi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 197 NVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred CCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 444455544444332 2466667776666644
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.11 E-value=2.1e+02 Score=30.11 Aligned_cols=23 Identities=4% Similarity=-0.064 Sum_probs=11.0
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHH
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMK 213 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~ 213 (603)
+|+.+|..+|++-++.++++.+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 44444444444444444444443
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.87 E-value=1.2e+02 Score=25.17 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=20.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (603)
-..+++.+...+..-.|.++|+++.+.+...+..|.-..++.+
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 4445555555555555566666665554444433333333333
No 430
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.49 E-value=26 Score=33.25 Aligned_cols=90 Identities=10% Similarity=-0.071 Sum_probs=50.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHH
Q 007461 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILV 208 (603)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 208 (603)
..|.++.|++.|...++.+ ++....|.--.+++.+.++...|++=+......++.....|-.--.+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4556666666666666554 444555555555556666666666555555555554444444444444555666666666
Q ss_pred HHHHHhCCCCC
Q 007461 209 YEKMKSAGIVL 219 (603)
Q Consensus 209 ~~~m~~~~~~p 219 (603)
|+...+.++.+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66555555443
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.30 E-value=1.2e+02 Score=22.69 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=6.7
Q ss_pred hhcCcHHHHHHHHHHH
Q 007461 197 NKLHMYYSTILVYEKM 212 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m 212 (603)
...|++++|.+.+++.
T Consensus 52 ~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 52 RRFGHYEEALQALEEA 67 (94)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3334444444444433
No 432
>PRK09857 putative transposase; Provisional
Probab=41.80 E-value=2e+02 Score=27.20 Aligned_cols=65 Identities=6% Similarity=0.022 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 007461 508 TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLD 573 (603)
Q Consensus 508 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 573 (603)
..++.-....++.++..++++.+.+.. .......-++.+-+...|.-+++.++.++|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444445566655666666555442 11223333455556666666778888888888887655
No 433
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.47 E-value=2.2e+02 Score=26.93 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=62.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 484 (603)
++....+.++.......+..+ + ....-...++.+...|++..|++++.+..+. . -....|+++=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i-~-----~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l-~~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI-K-----TVQQTQSRLQELLEEGDYPGALDLIEECQQL-L-EELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-H-HhcccchHHHHH---hHH
Confidence 344444444444444444443 1 3555566777778889999999988887653 1 011112211111 112
Q ss_pred HHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 485 LRQVEKLWKEMERRK-----VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
+++-....+++.+.. ..-|+..|..+..+|.-.|+.+.+.+-+...-.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~ 225 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFT 225 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 233333333322211 135777888888888888877665555554443
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=41.41 E-value=1.4e+02 Score=21.89 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 207 LVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 207 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
.+++.+.+.|+- |....-..-+...+.+++.++++.++.+|.. +|..+.+++...|...
T Consensus 20 ~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~-------AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 20 YLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQ-------AFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhcCchH
Confidence 355556665543 2222223333445677777777777777753 5777777776666543
No 435
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.77 E-value=5e+02 Score=28.06 Aligned_cols=220 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHcc
Q 007461 238 EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED----------PSIYASLICSFASI 307 (603)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------~~~~~~ll~~~~~~ 307 (603)
++-...+.+|..+--.++.....+...++-.|....+++..+++.+.+++ -|| .+.|.-.++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCC
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 007461 308 TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVY 387 (603)
Q Consensus 308 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 387 (603)
|+-++|....-.+++..-...+..|....+.|-.. .+-+.|...+..+.|.+.|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDm--------------------------F~~S~ytDa~s~~~a~~Wy 310 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDM--------------------------FIASNYTDAESLNHAIEWY 310 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhh--------------------------hhccCCcchhhHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 007461 388 EQLISQGCIPGQVTYASIINAYCRIAL-YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE 466 (603)
Q Consensus 388 ~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 466 (603)
++..+ +.|+..+-..+...+...|. ++...++-.--.+.+ ..+++.|..++..++|+-..
T Consensus 311 rkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn------------~LlgrKG~leklq~YWdV~~----- 371 (1226)
T KOG4279|consen 311 RKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLN------------SLLGRKGALEKLQEYWDVAT----- 371 (1226)
T ss_pred HHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHHHHH------------HHhhccchHHHHHHHHhHHH-----
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 467 PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYN 515 (603)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 515 (603)
.+.+-.-.+++.+|.+.-+.|. .++|...-+.+.+....
T Consensus 372 --------y~~asVLAnd~~kaiqAae~mf--KLk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 372 --------YFEASVLANDYQKAIQAAEMMF--KLKPPVWYLKSTMENIL 410 (1226)
T ss_pred --------hhhhhhhccCHHHHHHHHHHHh--ccCCceehHHHHHHHHH
No 436
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.56 E-value=6.2e+02 Score=29.07 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=92.6
Q ss_pred HHHcCCHHHHHHHHHHHHh-----------------------CCCCCCCcc--HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 231 YYKIGDSEKVAALFLECKS-----------------------RKLDSTPFS--THMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
|...|...+|...|.+... .|..+.+.. .+-|-..++.+-+.+..+++.++-...
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5567888888888866531 222222222 456778888888899999988887776
Q ss_pred HHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHH----------
Q 007461 286 KEKGILED----PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDP----EVCLKLVLMYIEEGLVEK---------- 347 (603)
Q Consensus 286 ~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~---------- 347 (603)
++. +.+| ..+++.+.+...+.|.+-+|...+-. .||. .....++-.++.+|+++.
T Consensus 1010 Ie~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1010 IEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 654 2222 34677888888888888887665432 2443 345567777888887753
Q ss_pred --HHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 007461 348 --TLD-VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKV 386 (603)
Q Consensus 348 --a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 386 (603)
... +++......+......|+.|-.-+...+++.+|-.+
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 233 333332232222233466666667778888776554
No 437
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=39.91 E-value=77 Score=22.27 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
+.+.|..++..+......++..||++.+.+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 456677777777766667788888877776655
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.99 E-value=2e+02 Score=23.02 Aligned_cols=43 Identities=7% Similarity=-0.055 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 522 MCVKFYNEFRMNGGVID-RAIAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 522 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
.+.++|+.|..+|+... ...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776665533 34566666667777777777777654
No 439
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.49 E-value=1.9e+02 Score=30.42 Aligned_cols=75 Identities=11% Similarity=0.016 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 007461 474 SLMDMHGRAKNLRQVEKLWKEMERRKV--TPDKVSYTTVISAYNRAREFD------MCVKFYNEFRMNGGVIDRAIAGIM 545 (603)
Q Consensus 474 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+|+.+|...|++..+.++++......- +.=...+|..|+...+.|.++ .|.+.++... +.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 678888888888888888888765421 111234777777777777653 3344444433 33466677776
Q ss_pred HHHHHc
Q 007461 546 VGVFSK 551 (603)
Q Consensus 546 ~~~~~~ 551 (603)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 440
>PRK14136 recX recombination regulator RecX; Provisional
Probab=38.11 E-value=3.6e+02 Score=25.59 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 76 AVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC 155 (603)
Q Consensus 76 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (603)
..|....++..+..|....... .++.+++.+. |+.+ +....+++.+.+.|+..|..--
T Consensus 158 ~~~~~~lk~kAL~lLSrReRSe---~ELr~KL~kk-G~~e------------------e~IE~VIerLke~gYLDDeRFA 215 (309)
T PRK14136 158 SRPARSLKGRALGYLSRREYSR---AELARKLAPY-ADES------------------DSVEPLLDALEREGWLSDARFA 215 (309)
T ss_pred cccHHHHHHHHHHHhhcccccH---HHHHHHHHHc-CCCH------------------HHHHHHHHHHHHcCCcCHHHHH
Confidence 4455555777777776665553 3555555554 4432 2334555555566655554443
Q ss_pred HHHHH
Q 007461 156 SRLVA 160 (603)
Q Consensus 156 ~~ll~ 160 (603)
..++.
T Consensus 216 esyVr 220 (309)
T PRK14136 216 ESLVH 220 (309)
T ss_pred HHHHH
Confidence 44443
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.80 E-value=2.8e+02 Score=24.23 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
--+++..|-+.-+|.+.+++++.|.+..+
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i 163 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQI 163 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777888888888887776544
No 442
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.67 E-value=80 Score=31.61 Aligned_cols=52 Identities=17% Similarity=-0.015 Sum_probs=26.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHh
Q 007461 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSL-MDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 444 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~ 497 (603)
+.+.+.++.|..++.+.++. .||...|-.. ..++.+.+++..|..=+...++
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 34455555666666555553 4443333222 2455555555555555555543
No 443
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.61 E-value=1.7e+02 Score=21.61 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 525 KFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
++|+-....|+..|+..|.++++.+.-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7777777778888888888888766666667777777777754
No 444
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.36 E-value=1.7e+02 Score=21.73 Aligned_cols=31 Identities=6% Similarity=0.043 Sum_probs=13.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIY 146 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 146 (603)
|...--.+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444444455555555555544444433
No 445
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.85 E-value=1.2e+02 Score=19.86 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=9.5
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 007461 548 VFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 548 ~~~~~g~~~~A~~~~~~m~~ 567 (603)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34455555555555555543
No 446
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.39 E-value=2.3e+02 Score=22.79 Aligned_cols=41 Identities=5% Similarity=-0.031 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHH
Q 007461 523 CVKFYNEFRMNGGVIDR-AIAGIMVGVFSKLSQIEELVKLLQ 563 (603)
Q Consensus 523 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 563 (603)
..++|..|..+++-... ..|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666666655433 345556666666677777766664
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.02 E-value=3.4e+02 Score=24.66 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHHHHHhC-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007461 480 GRAKNLRQVEKLWKEMERR-K-----------VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI 537 (603)
Q Consensus 480 ~~~g~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 537 (603)
...|+..+|..-++.-... | -.|.+.....++..|.+ +++++|.+++.++-+.|+.|
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSP 271 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCH
Confidence 4456666666555544321 1 12444444444544433 45566666666655555543
No 448
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.58 E-value=2e+02 Score=28.56 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHH-------HHhCCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSED-------FKIYNVLP-----DAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
+....-.++..+....+..+-++..+. ....|..| .-.+...|++..+-.||+..|+++++.+.-...
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred c--------chhhHHHHHhhhhhcCcHHHHHHHHHHHH
Q 007461 184 I--------ALLAFNSAMGGYNKLHMYYSTILVYEKMK 213 (603)
Q Consensus 184 ~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 213 (603)
. ...++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 449
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.44 E-value=2.6e+02 Score=26.94 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=47.1
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPEK----STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
..|-..+.++..+..+++. -|+. .-|-.+++.....|.++.++.+|++++..|..|-...-..+++.+-
T Consensus 114 ~eGcp~eei~~~L~~li~~---IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKN---IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HcCCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4455555577777776653 3443 3567777777778888888888888888887776666666666554
No 450
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.28 E-value=4.6e+02 Score=26.01 Aligned_cols=180 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---------CCCCC
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEK--GILEDPSIYASLICSFASITEVKLAEELFKEAEEK---------GMLRD 328 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~~ 328 (603)
..+..+.+.|...|+++.|++.|-+.+.- ..+--...|..+|....-.|+|........+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK------ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTY 402 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 402 (603)
...+..+.....+ ++..|.+.|-........ |+..+....+.+++--++-+--+.+...-.-..+---....
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-----CCCcCHhhHHHHHH
Q 007461 403 ASIINAYCRIALYSKAEKVFIEMQQK-----GFDKCVVAYSSMVA 442 (603)
Q Consensus 403 ~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~ 442 (603)
..+|..+.. +++....++++++... -+.|.+.+.-.+|+
T Consensus 309 r~il~~fy~-sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 309 REILFKFYS-SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHhh-hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 451
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.22 E-value=3.8e+02 Score=25.11 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007461 449 RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA-------KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----A 517 (603)
Q Consensus 449 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 517 (603)
+..+|...+++..+.|..+.......+...|... -+...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 4555555555555554333211122222222221 12235666777766554 33333444444432 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---------------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 007461 518 REFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLS---------------QIEELVKLLQDMKSEGTKLDERLYH 578 (603)
Q Consensus 518 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~g~~~~~~~~~ 578 (603)
.++++|...|+..-+.|. ......+. .+...| +...|...+......|.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 367777777777777654 22222222 333333 6777778877777777655555555
No 452
>PRK09857 putative transposase; Provisional
Probab=35.19 E-value=2.8e+02 Score=26.29 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 007461 403 ASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN 468 (603)
Q Consensus 403 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 468 (603)
..++......++.++..++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444555555555555555443 122222333444444444544555555666655555443
No 453
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.04 E-value=4.8e+02 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 007461 123 LIRYLVQSKKWDSIVSLSEDF 143 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~ 143 (603)
+..-++..|.++.|.+++++-
T Consensus 124 laadhvAAGsFetAm~LLnrQ 144 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQ 144 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHH
T ss_pred cHHHHHHhCCHHHHHHHHHHH
Confidence 566688899999999999853
No 454
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.78 E-value=2e+02 Score=21.80 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 520 FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581 (603)
Q Consensus 520 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 581 (603)
.....+.++++...+....+.....|.-.|++.|+-+.|.+-|+.=+. ..|..-+|--.+
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFL 112 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHH
Confidence 344455666666666555555555666677777777777777765443 355555554433
No 455
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.77 E-value=1.5e+02 Score=22.88 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 007461 475 LMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 475 li~~~~~~g~~~~a~~~~~~m 495 (603)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444445555555555443
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.45 E-value=4.7e+02 Score=25.93 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--ccCChHHHHHHHHHHHhc
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAH--TCSRLVASCV--RARKFKIANTLLQVFITD 181 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 181 (603)
+..+...+++..|.++++.+... ++++.. .+..+..+|. ...++++|.+.++.+...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455678888888888888776 455444 3344444443 345677777777776553
No 457
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.28 E-value=1.5e+02 Score=20.21 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=15.4
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007461 270 GKSGRAFEALKFFRDMKEKGILEDPSIYASLICS 303 (603)
Q Consensus 270 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (603)
...|++=+|-++++++-.....+....+..+|..
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 3455666666666665432222233444444443
No 458
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=34.26 E-value=2.1e+02 Score=21.87 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 485 LRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
.++|..+-+-+...+-. ....-.+=+..+...|++++|..+.+.. ..||...|-.|-. .+.|..+++..-+-+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555555433211 1111122233455677777777776654 3567666655544 366666666666666
Q ss_pred HHhCC
Q 007461 565 MKSEG 569 (603)
Q Consensus 565 m~~~g 569 (603)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66655
No 459
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.23 E-value=2e+02 Score=22.24 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQL 390 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m 390 (603)
.++..|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555555566555555554
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.15 E-value=2.2e+02 Score=24.34 Aligned_cols=51 Identities=6% Similarity=-0.111 Sum_probs=30.1
Q ss_pred hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 187 LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
..-..++..+...+..-.|.++++.+.+.+..++..|....|+.+.+.|-+
T Consensus 26 ~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 26 PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 333344444444455566777777777766666666655666666666643
No 461
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=33.05 E-value=4.6e+02 Score=25.38 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 521 DMCVKFYNEFRMNGGVIDRA----IAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALR 585 (603)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~ 585 (603)
+++..++++++++ .|+.. .|-+++....+.|.+++++.+|++++..|-.|=...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3445555555443 22321 345555555556666666666666666665555555555554443
No 462
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.01 E-value=5.6e+02 Score=26.01 Aligned_cols=118 Identities=8% Similarity=-0.079 Sum_probs=61.9
Q ss_pred cCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHH
Q 007461 130 SKKWDSIV-SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILV 208 (603)
Q Consensus 130 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 208 (603)
.|+.-.|- +++..++.....|+.....+. .....|+++.+...+......-.....+..++++...+.|++++|..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 44444333 333333333333443333332 234556777666666555443334555666667777777777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 209 YEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 209 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
-+-|....+. ++.....-.-..-..|-++++...++++...
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 6666665544 3333333333333446666666666665543
No 463
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.96 E-value=2.2e+02 Score=21.24 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 207 LVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 207 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
.+++.+.+.|+- |-...-...+..-+.+++.++++.+..+|+. +|..+..++...+.
T Consensus 24 ~v~~~L~~~gvl----t~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~-------AF~~F~~aL~~~~~ 80 (90)
T cd08332 24 ELLIHLLQKDIL----TDSMAESIMAKPTSFSQNVALLNLLPKRGPR-------AFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHcCCC----CHHHHHHHHcCCCcHHHHHHHHHHHHHhChh-------HHHHHHHHHHhcCh
Confidence 345555555543 1122222223335667777777777777753 57777777755443
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.80 E-value=1.3e+02 Score=32.73 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=51.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRARE 519 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 519 (603)
+|.-+.+.|-++-|+.+.+.-. + -...+...|+++.|++.-+.+- |..+|..|.......|+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcc
Confidence 3444455566665655543321 1 1234456789998887766552 66789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 007461 520 FDMCVKFYNEFRM 532 (603)
Q Consensus 520 ~~~a~~~~~~~~~ 532 (603)
.+-|+..|+..+.
T Consensus 688 ~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKN 700 (1202)
T ss_pred hHHHHHHHHHhhh
Confidence 9999999988764
No 465
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.79 E-value=1.2e+02 Score=20.99 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
|....++.++..+++-.-.++++..+.+....+..+..+|..-++.+++..-+.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~ 59 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLK 59 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666667777777777666666666666666666654333
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.65 E-value=2.5e+02 Score=25.75 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 510 VISAYNRAREFDMCVKFYNEFRMN----GGV-IDRAIAGIMVGVFSKLSQIEELVKLL 562 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 562 (603)
+..-|.+.|++++|.++|+.+... |.. +...+...+..++.+.|+.++.+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344455555555555555554211 111 12223334444555555555544443
No 467
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.07 E-value=6.3e+02 Score=26.31 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=17.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCCC
Q 007461 199 LHMYYSTILVYEKMKSAGIVLD 220 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~ 220 (603)
.|+..+|+.+++++...|..|.
T Consensus 270 ~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 270 HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 4788888888888888877643
No 468
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.83 E-value=6.7e+02 Score=26.57 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
....+..|++.+... +.+.-.++++++.. .. ...|..++++....|-......+.+.+....
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 334445555544332 34445555555433 11 4555666666666665555555555554433
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.77 E-value=4.7e+02 Score=24.75 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=29.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 227 IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 227 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
++..+.+.++.....+.++.+..- ..-...++.+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~v---------~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKTV---------QQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444555555555555555544321 1234456666677777777777766654
No 470
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.68 E-value=2.9e+02 Score=26.14 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
++++.+.+.++.|.-.++..+.-.+.+.=.+.+.+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344445555555555555555545555445555555555554
No 471
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.70 E-value=2.8e+02 Score=22.92 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=31.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 007461 494 EMERRKVTPDKVSYTTVISAYNRA-REFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI 555 (603)
Q Consensus 494 ~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 555 (603)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.---++.+...|-.
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444555544432 2333334332 34556777777777666555555544444555555543
No 472
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=29.56 E-value=2.3e+02 Score=22.76 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=23.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCcHHHHHHHHhh
Q 007461 543 GIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYH-SAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~a~~~~g~~~~a~~~~~~ 599 (603)
.++..++.=.|..++|.++++.. +.-++....+ .+++.|.+....++..++-++
T Consensus 70 EAlAAaLyI~G~~~~A~~lL~~F---kWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 70 EALAAALYILGFKEQAEELLSKF---KWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred HHHHHHHHHcCCHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34444444455555555544433 2223322222 344555555555454444443
No 473
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.14 E-value=72 Score=30.42 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV-SYTTVISAYNRAREFDMCVK 525 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~ 525 (603)
.|.++.|++.|...++.+ ++....|.--..++.+.++...|++=+...++ +.||.. .|-.=-.+....|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 344555555555444431 22333333333444555555555555444442 233331 12222222333455555555
Q ss_pred HHHHHHHCCC
Q 007461 526 FYNEFRMNGG 535 (603)
Q Consensus 526 ~~~~~~~~~~ 535 (603)
.++...+.++
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5555555444
No 474
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.04 E-value=4.9e+02 Score=24.44 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHcCC
Q 007461 259 THMYKILCDSLGKSGRAFEALKFFRDMKE----KGILEDPSIYAS-LICSFASITEVKLAEELFKEAEEKGM 325 (603)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~ 325 (603)
..+|..+...|++.++.+.+.++.++..+ .|.+.|.....+ +.-.|....-+++..+..+.+.++|-
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 45788888888888888888887766543 355555432222 22223333345566666666666653
No 475
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.70 E-value=8.4e+02 Score=27.05 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=28.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESM 355 (603)
Q Consensus 299 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 355 (603)
++-..+...|+.+....+-..+. .|..++..++..|.+++|++++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344445566665555444333 2455677778888888888776654
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.66 E-value=2.9e+02 Score=25.34 Aligned_cols=55 Identities=9% Similarity=-0.016 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 475 LMDMHGRAKNLRQVEKLWKEMER----RK-VTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 475 li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
+..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.=+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34455556666666666655521 11 112223344555555566666655554433
No 477
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=28.28 E-value=1.8e+02 Score=27.50 Aligned_cols=75 Identities=3% Similarity=-0.010 Sum_probs=32.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHccCChHHHHHHHHHHHhcCCcchhhH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV-ASCVRARKFKIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (603)
..|+..|...+..-.+.|.+.+...++.+..+.+ |.|+..|-.-- --+...++++.++.+|..-.+.++.++..|
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 3444455555444444455555555555554443 33333332211 112233444455555554444444444444
No 478
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=28.16 E-value=2.5e+02 Score=20.80 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 007461 542 AGIMVGVFSKLSQIEELVKLLQDMKSE-GTKLDERLYHSAMNALRDAGLQMQAQWLQ 597 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~a~~~~g~~~~a~~~~ 597 (603)
...+-.-|-+.|-.+.+.+++.+.... |- ..|...|+.|+...+...-|..++
T Consensus 35 ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~---~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 35 IDNLAYEYDREGLYEQAYQLLRRFIQSEGK---KATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHccchHHHHHHh
Confidence 444555677788888888888887764 32 377888888888888777777665
No 479
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=27.60 E-value=5.8e+02 Score=26.05 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHHhcC-CHH
Q 007461 307 ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI----SCAIVNGFSKRR-GYW 381 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~-~~~ 381 (603)
..++++|.++.++..+.+.. ..-|-+-.|.+++.++.++++.||..+ ....+.+|+-.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~-------------~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKP-------------ISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCc-------------eEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Q ss_pred HHHHHHHH---HHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----------
Q 007461 382 AAVKVYEQ---LISQGCIPGQVTYASIINAYCRIAL--YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK---------- 446 (603)
Q Consensus 382 ~a~~~~~~---m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------- 446 (603)
++.++..+ -...-...+.......|..+.+.|- +|-...+..+..+.|+. +...|-..+..|.+
T Consensus 274 e~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPF 352 (545)
T TIGR01228 274 DADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPF 352 (545)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCc
Q ss_pred -----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH--------------HHhcCCHHHHHHHHHHHHhCC
Q 007461 447 -----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM--------------HGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 447 -----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--------------~~~~g~~~~a~~~~~~m~~~~ 499 (603)
.|++++..+.=+.+.+. +++|...++-+=.+ |.-.|.-.++-..|++|+..|
T Consensus 353 RWvaLSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 353 RWVALSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred eeEecCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
No 480
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=27.35 E-value=6.7e+02 Score=25.47 Aligned_cols=135 Identities=8% Similarity=0.061 Sum_probs=96.3
Q ss_pred CChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157 (603)
Q Consensus 78 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (603)
|....-..-|..-...|+...+..+++.-+...+|. |+.... ........|+++.+.+.+...... +.....+...
T Consensus 287 ~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~-p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~ 362 (831)
T PRK15180 287 DQIREITLSITKQLADGDIIAASQQLFAALRNQQQD-PVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRC 362 (831)
T ss_pred cchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCC-chhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHH
Confidence 333333344555556777776566677777665443 343333 334456779999999998876543 3456678889
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
+++...+.|+++.|...-+.|......++++...........|-++++.-.+.++...+
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999999999999999988777777777766666677788999999888887654
No 481
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.22 E-value=6.9e+02 Score=25.55 Aligned_cols=442 Identities=12% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCH-----HhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 85 SFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEK-----STLKLLIRYLVQSK-KWDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
.+-..+..-.+.-+.|...++++.....--|+- .++..|.+.+.... .+..+..++.+.++.. ...+.-...+
T Consensus 51 qLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels-q~~p~wsckl 129 (629)
T KOG2300|consen 51 QLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS-QSVPYWSCKL 129 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-cCCchhhHHH
Q ss_pred HHHHHcc----CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc---------CcHHHHHHHHHHHHhCCCCCC-----
Q 007461 159 VASCVRA----RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL---------HMYYSTILVYEKMKSAGIVLD----- 220 (603)
Q Consensus 159 l~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~----- 220 (603)
+--+++. .++..|.+++.-=-....+-...|..++..+.+. .++.++......|.+. ..+|
T Consensus 130 lfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E 208 (629)
T KOG2300|consen 130 LFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKE 208 (629)
T ss_pred HHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHH
Q ss_pred ---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 221 ---SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297 (603)
Q Consensus 221 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 297 (603)
++-...-+.-|.-.|+...+...++++...-....+++ ......=-..-...+|..+.+. ..+.-.|
T Consensus 209 ~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~--------~~h~e~ilgsps~~l~~wlpke--qicaLV~ 278 (629)
T KOG2300|consen 209 MLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS--------RGHDEKILGSPSPILFEWLPKE--QICALVY 278 (629)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC--------CCccccccCCCChHHHhhccHh--hhHhhhh
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKR 377 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 377 (603)
......-...|-++++.++-+++... --+..+.+....++..++-. +...++-.-.-.
T Consensus 279 l~tv~hsm~~gy~~~~~K~tDe~i~q---------------~eklkq~d~~srilsm~km~-------~LE~iv~c~lv~ 336 (629)
T KOG2300|consen 279 LVTVIHSMPAGYFKKAQKYTDEAIKQ---------------TEKLKQADLMSRILSMFKMI-------LLEHIVMCRLVR 336 (629)
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHH---------------HhhcccccchhHHHHHHHHH-------HHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhH--HHHHHHHHc
Q 007461 378 RGYWAAVKVYEQLISQGCIPGQ---------VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAY--SSMVAMYGK 446 (603)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~---------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~ 446 (603)
|++.+|++-..+|.+.-..... ..-..+.-.|+..|.++.|+.-|....+.--..|...+ ..+.-.|.+
T Consensus 337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~ 416 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR 416 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH----------HHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD----------MHGRAKNLRQVEKLWKEMERRK-----VTPDKVSYTTVI 511 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~----------~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li 511 (603)
.|+.+.-.++++.+- +++..++..-.- -....+++.+|...+.+-.+.. .+...-....|.
T Consensus 417 ~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 417 IGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred hccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHH----HHHHHHHHHHccCC--HHHHHHHHHH
Q 007461 512 SAYNRAREFDMCVKFYNEFRMNGGV-IDRA----IAGIMVGVFSKLSQ--IEELVKLLQD 564 (603)
Q Consensus 512 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~--~~~A~~~~~~ 564 (603)
..+...|+..++.+..+-....--+ ||.. .-.++-+.+...|+ .++..+.+..
T Consensus 493 ~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
No 482
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.08 E-value=5.3e+02 Score=24.22 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEM 425 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~ 425 (603)
..+..+...|++.++.+.+.+..++.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34445555556666655555555443
No 483
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=26.88 E-value=3.5e+02 Score=22.09 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=41.4
Q ss_pred hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 007461 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 265 (603)
..-|.+++-++.....+.....++.+..+..-.|+ -|..++. ....|++.++..+++.... .|+.+
T Consensus 59 ~A~~~AmliGL~Nr~~ytT~a~~l~Eal~Lp~rP~--Gyd~l~~-lvm~G~L~d~~~i~~~cE~-----------~W~Gl 124 (143)
T PF07827_consen 59 LAWYGAMLIGLHNRTLYTTSARVLPEALSLPSRPS--GYDELAQ-LVMSGQLTDPEKIYESCEA-----------LWTGL 124 (143)
T ss_dssp HHHHHHHHHHHHCT---SSCCCHHHHHTTSSS--T--THHHHHH-HHHHTB---HHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHhccceeeccccccHHHhcCCCCCc--cHHHHHH-HHhccccCCHHHHHHHHHH-----------HHHHH
Confidence 34456667777766666666667777776544444 4555554 4567888888888876653 46666
Q ss_pred HHHHhccC
Q 007461 266 CDSLGKSG 273 (603)
Q Consensus 266 i~~~~~~g 273 (603)
.......|
T Consensus 125 ~~Wa~~hg 132 (143)
T PF07827_consen 125 VKWAAEHG 132 (143)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 65554443
No 484
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=26.52 E-value=8.7e+02 Score=26.47 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHcc
Q 007461 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG-------------GVIDRAIAGIMVGVFSKL 552 (603)
Q Consensus 486 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~ 552 (603)
+-...+-..+...|+..+......++... .|+...++.+++++...+ ...+......+++++.+
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 553 SQIEELVKLLQDMKSEGTKLDERLYHSA 580 (603)
Q Consensus 553 g~~~~A~~~~~~m~~~g~~~~~~~~~~l 580 (603)
|+...++.+++++.+.|+.+....-..+
T Consensus 259 ~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 485
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.25 E-value=9.2e+02 Score=26.69 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=18.4
Q ss_pred hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC
Q 007461 187 LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL 219 (603)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 219 (603)
.....++..+. .+++.+++.+++++...|+.+
T Consensus 247 ~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 247 TYMVRLLDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 33444444333 366777777777777666543
No 486
>PHA00425 DNA packaging protein, small subunit
Probab=25.90 E-value=2.5e+02 Score=20.09 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
+.+.|..++..+......++..||++-..+.+.+ | .-..++||..+..-+..+
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHk--------F---~isKl~pD~~iLg~la~~ 66 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHK--------F---QISKLQPDENILGGLAAA 66 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHHhc--------c---cccccCCcHHHHHHHHHH
Confidence 5667788888887777788888998887766553 1 112367887765544433
No 487
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=25.81 E-value=5.8e+02 Score=24.23 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 007461 505 VSYTTVISAYNRAREFDMC 523 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a 523 (603)
.+|.-|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3577778888888876654
No 488
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=25.81 E-value=2.8e+02 Score=22.07 Aligned_cols=20 Identities=15% Similarity=-0.052 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 007461 330 EVCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~ 349 (603)
..+..|..++...|++++++
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHhhccHHHHH
Confidence 34444555555566655544
No 489
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.79 E-value=5.9e+02 Score=24.27 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=23.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
....+.....+.|..++-..+++.... .++...-..++.+.+...+.+...++++.+..
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 334444444444443333233222222 12334444455555555555555555554444
No 490
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.52 E-value=8e+02 Score=25.73 Aligned_cols=161 Identities=9% Similarity=-0.071 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc--------------
Q 007461 127 LVQSKKWDSIVSLSEDFKIY-----------NVLPDAHTCSRLVASCVRARKFKIANTLLQVFITD-------------- 181 (603)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------- 181 (603)
+..+..+++|..-|...... .-+-...+...+...+...|+.+-|..+.++.+=.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred -------CCcchhhHHHH---HhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHhC
Q 007461 182 -------GEIALLAFNSA---MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY-KIGDSEKVAALFLECKSR 250 (603)
Q Consensus 182 -------~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~ 250 (603)
.+.+...|.+| +..+.+.|.+..|.++...+.+....-|+.....+|+.|+ +..++.-.+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred CCCCCCccHHHHHHHHHHHhccCC---HHHHHHHHHHHHH
Q 007461 251 KLDSTPFSTHMYKILCDSLGKSGR---AFEALKFFRDMKE 287 (603)
Q Consensus 251 ~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~ 287 (603)
+....-++-.---+|+..|..... -+.|...+.+...
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.39 E-value=1.5e+02 Score=23.06 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=30.2
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHH
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE 238 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 238 (603)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 33444444555667777888877776666667666777777766433
No 492
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.23 E-value=1.1e+02 Score=21.75 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007461 517 AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLS 553 (603)
Q Consensus 517 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
.|+.+.+.+++++..+.|..|.....+.+..+..+.|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655555555544554443333
No 493
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.22 E-value=3.5e+02 Score=23.09 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=20.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007461 264 ILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASIT 308 (603)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 308 (603)
.++..+...++.-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334444444444455555555555554444444444444444433
No 494
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.19 E-value=3.8e+02 Score=21.93 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 202 YYSTILVYEKMKSA-GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 202 ~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
..+.+.+++.+.+. ...-.......|.-++.+.+++++++++.+.+.+..
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 44455555555541 111122233344445556666666666555555443
No 495
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=24.95 E-value=4.1e+02 Score=23.45 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 504 KVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
....+.++..|...||++.|.+.|.-++......=...|..=++.+.+.+......+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.91 E-value=1.5e+02 Score=23.15 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=22.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007461 511 ISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQ 554 (603)
Q Consensus 511 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
+..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33444444445566666666655555555444444444555544
No 497
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=24.72 E-value=5.8e+02 Score=23.86 Aligned_cols=84 Identities=18% Similarity=0.102 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH----hc
Q 007461 414 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG-------RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG----RA 482 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~ 482 (603)
+..+|...|+...+.|..+.......+...|.... +...|...+.+.-..+ +......+...|. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 45555555555555553222122333333333221 2235666666666554 2223333333332 23
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 007461 483 KNLRQVEKLWKEMERRKV 500 (603)
Q Consensus 483 g~~~~a~~~~~~m~~~~~ 500 (603)
.+.++|...|....+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 466777777777766653
No 498
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.42 E-value=1.2e+02 Score=17.52 Aligned_cols=13 Identities=8% Similarity=0.025 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKA 462 (603)
Q Consensus 450 ~~~A~~~~~~m~~ 462 (603)
++.|..+|++...
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 499
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.09 E-value=2.4e+02 Score=19.21 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=25.3
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCcHHHHHHH
Q 007461 549 FSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL-----RDAGLQMQAQWL 596 (603)
Q Consensus 549 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~-----~~~g~~~~a~~~ 596 (603)
+.+.|++=+|-++++.+-..--.+....+..+|+.. .+.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345666666666666665432233445555555543 245666666554
No 500
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.99 E-value=3.5e+02 Score=21.05 Aligned_cols=10 Identities=10% Similarity=-0.080 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 007461 100 AYDYYNEAKK 109 (603)
Q Consensus 100 a~~~~~~~~~ 109 (603)
|-.+.+|+.+
T Consensus 25 A~tIa~wL~~ 34 (116)
T PF09477_consen 25 ANTIADWLEQ 34 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444433
Done!