Query 007461
Match_columns 603
No_of_seqs 727 out of 3238
Neff 11.2
Searched_HMMs 29240
Date Tue Mar 26 02:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.5E-41 2.9E-45 353.4 42.4 471 115-600 82-576 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5E-40 1.7E-44 347.5 42.8 490 76-584 80-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 8.9E-31 3.1E-35 264.8 25.2 204 348-551 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.2E-30 4E-35 264.0 25.8 207 311-517 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3.9E-27 1.3E-31 234.5 48.2 381 124-552 6-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 8.7E-27 3E-31 232.0 48.0 380 161-588 8-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 9.2E-24 3.2E-28 218.5 41.8 445 117-575 6-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.6E-23 8.8E-28 215.2 40.0 442 83-535 9-480 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 6.3E-22 2.2E-26 201.1 41.0 327 100-462 11-357 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 6.7E-22 2.3E-26 200.9 39.5 329 77-441 22-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 3.3E-21 1.1E-25 200.5 45.1 401 119-533 27-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.2E-21 4.2E-26 203.8 38.2 402 152-569 25-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.3E-18 7.7E-23 168.9 38.8 332 116-481 2-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 4.9E-18 1.7E-22 166.5 40.5 334 151-516 2-352 (359)
15 2xm6_A Protein corresponding t 99.8 5E-16 1.7E-20 159.1 49.6 364 137-535 27-434 (490)
16 2ooe_A Cleavage stimulation fa 99.8 7E-17 2.4E-21 167.2 43.5 133 114-249 10-158 (530)
17 2ooe_A Cleavage stimulation fa 99.8 2.1E-16 7.1E-21 163.6 46.7 127 82-214 15-158 (530)
18 2xm6_A Protein corresponding t 99.8 7.1E-16 2.4E-20 157.9 50.0 365 100-500 26-434 (490)
19 3hym_B Cell division cycle pro 99.8 7.6E-18 2.6E-22 163.1 32.3 194 155-355 25-219 (330)
20 3hym_B Cell division cycle pro 99.8 8.8E-18 3E-22 162.6 32.6 288 113-409 18-314 (330)
21 1fch_A Peroxisomal targeting s 99.8 1.4E-17 4.9E-22 163.9 28.0 307 233-564 37-355 (368)
22 1xi4_A Clathrin heavy chain; a 99.8 8.2E-15 2.8E-19 157.1 49.4 383 115-560 983-1376(1630)
23 1fch_A Peroxisomal targeting s 99.8 1.4E-17 4.6E-22 164.1 26.6 302 165-494 38-355 (368)
24 1xi4_A Clathrin heavy chain; a 99.8 1.6E-14 5.5E-19 155.0 50.2 447 85-595 903-1376(1630)
25 1b89_A Protein (clathrin heavy 99.8 6.2E-17 2.1E-21 155.8 28.4 330 118-529 33-368 (449)
26 1b89_A Protein (clathrin heavy 99.8 9.6E-17 3.3E-21 154.5 26.2 236 78-353 30-267 (449)
27 4eqf_A PEX5-related protein; a 99.8 3.8E-17 1.3E-21 160.8 24.1 233 185-426 64-308 (365)
28 4eqf_A PEX5-related protein; a 99.8 8.2E-17 2.8E-21 158.3 26.5 263 332-599 68-352 (365)
29 3cv0_A Peroxisome targeting si 99.8 7.9E-16 2.7E-20 148.6 29.1 276 296-599 23-311 (327)
30 3cv0_A Peroxisome targeting si 99.8 4.5E-16 1.5E-20 150.3 26.9 96 119-215 23-118 (327)
31 3spa_A Mtrpol, DNA-directed RN 99.7 2.6E-18 9E-23 178.2 11.2 117 400-516 128-248 (1134)
32 4g1t_A Interferon-induced prot 99.7 9.6E-15 3.3E-19 149.0 37.2 390 152-577 51-469 (472)
33 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.7E-20 143.0 28.0 246 197-462 10-263 (291)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.5E-18 1.5E-22 176.5 10.4 138 431-573 124-265 (1134)
35 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.8E-20 142.9 26.8 251 125-393 7-264 (291)
36 4g1t_A Interferon-induced prot 99.7 7.7E-15 2.6E-19 149.7 33.5 386 114-535 48-461 (472)
37 3e4b_A ALGK; tetratricopeptide 99.6 5.9E-14 2E-18 141.4 26.7 346 158-534 9-388 (452)
38 3e4b_A ALGK; tetratricopeptide 99.6 7E-14 2.4E-18 140.9 26.6 346 123-499 9-388 (452)
39 3uq3_A Heat shock protein STI1 99.6 1.4E-13 5E-18 127.6 25.5 93 472-566 142-234 (258)
40 3uq3_A Heat shock protein STI1 99.6 1.4E-13 4.9E-18 127.6 25.4 223 261-532 7-235 (258)
41 2pl2_A Hypothetical conserved 99.6 6.6E-14 2.2E-18 126.1 21.7 198 114-319 2-210 (217)
42 2pl2_A Hypothetical conserved 99.6 4.7E-14 1.6E-18 127.0 20.6 199 149-355 2-211 (217)
43 4e6h_A MRNA 3'-END-processing 99.6 3.8E-11 1.3E-15 125.0 43.1 147 100-249 51-222 (679)
44 2h6f_A Protein farnesyltransfe 99.6 2.8E-13 9.7E-18 132.1 25.5 247 117-374 97-363 (382)
45 1ouv_A Conserved hypothetical 99.6 6.9E-12 2.4E-16 117.4 32.1 224 328-569 5-252 (273)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.3E-13 7.8E-18 127.6 21.2 245 343-597 19-269 (275)
47 2ho1_A Type 4 fimbrial biogene 99.6 2E-12 6.9E-17 119.5 26.4 198 367-568 40-238 (252)
48 3u4t_A TPR repeat-containing p 99.6 1.2E-12 4.2E-17 122.5 25.2 230 158-393 9-250 (272)
49 3u4t_A TPR repeat-containing p 99.6 1.5E-12 5.1E-17 121.9 25.6 245 331-581 5-262 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.3E-13 8E-18 127.6 19.9 216 99-322 23-243 (275)
51 2vq2_A PILW, putative fimbrial 99.6 3.3E-12 1.1E-16 115.5 26.9 200 366-568 10-211 (225)
52 2ho1_A Type 4 fimbrial biogene 99.6 2.7E-12 9.2E-17 118.6 26.5 198 119-322 39-237 (252)
53 1ouv_A Conserved hypothetical 99.5 2.2E-11 7.5E-16 114.0 32.8 218 299-534 11-252 (273)
54 4e6h_A MRNA 3'-END-processing 99.5 6.6E-10 2.3E-14 115.7 46.5 425 81-536 67-573 (679)
55 2vq2_A PILW, putative fimbrial 99.5 3.5E-12 1.2E-16 115.3 26.2 97 117-214 8-105 (225)
56 2h6f_A Protein farnesyltransfe 99.5 1.4E-12 4.8E-17 127.2 24.6 230 152-390 97-344 (382)
57 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4.3E-17 120.0 21.7 197 331-532 25-221 (243)
58 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.4E-17 120.7 21.0 211 363-579 22-232 (243)
59 4a1s_A PINS, partner of inscut 99.5 1.1E-12 3.6E-17 131.1 19.6 235 120-355 51-329 (411)
60 3sf4_A G-protein-signaling mod 99.5 3.3E-12 1.1E-16 127.2 21.9 206 115-321 7-254 (406)
61 3sf4_A G-protein-signaling mod 99.5 2.1E-12 7.1E-17 128.6 20.3 305 220-555 8-363 (406)
62 3ro2_A PINS homolog, G-protein 99.5 2.2E-12 7.6E-17 124.6 19.8 278 119-428 7-332 (338)
63 4a1s_A PINS, partner of inscut 99.5 1.5E-12 5.3E-17 129.9 18.7 132 401-532 225-371 (411)
64 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-11 6.7E-16 106.7 21.6 167 116-288 4-170 (184)
65 2ond_A Cleavage stimulation fa 99.4 8.1E-11 2.8E-15 112.2 27.5 79 169-249 81-162 (308)
66 3ro2_A PINS homolog, G-protein 99.4 3.8E-12 1.3E-16 122.9 18.3 133 436-568 185-332 (338)
67 2ond_A Cleavage stimulation fa 99.4 3.4E-10 1.2E-14 107.8 30.5 218 276-496 33-268 (308)
68 3ulq_A Response regulator aspa 99.4 2.3E-11 7.7E-16 120.1 22.6 164 401-567 186-367 (383)
69 4abn_A Tetratricopeptide repea 99.4 2.8E-11 9.7E-16 122.6 23.0 195 398-597 101-315 (474)
70 3ulq_A Response regulator aspa 99.4 4E-11 1.4E-15 118.3 23.2 197 401-600 145-365 (383)
71 3vtx_A MAMA; tetratricopeptide 99.4 9.1E-11 3.1E-15 102.4 22.8 167 398-568 4-170 (184)
72 4abn_A Tetratricopeptide repea 99.4 1.9E-11 6.4E-16 123.9 19.9 210 133-350 84-313 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 2.6E-12 9E-17 122.7 11.7 171 117-287 27-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.3 1.1E-11 3.9E-16 118.2 14.8 172 151-322 26-223 (311)
75 3q15_A PSP28, response regulat 99.3 5.2E-10 1.8E-14 110.1 24.6 165 227-392 107-289 (378)
76 3q15_A PSP28, response regulat 99.3 4E-10 1.4E-14 110.9 23.6 164 401-567 184-364 (378)
77 1hz4_A MALT regulatory protein 99.3 8.7E-10 3E-14 108.3 25.8 166 122-287 19-202 (373)
78 1hz4_A MALT regulatory protein 99.3 1.3E-09 4.6E-14 106.9 27.0 270 299-568 19-322 (373)
79 3as5_A MAMA; tetratricopeptide 99.3 3.6E-10 1.2E-14 98.4 19.4 166 117-288 8-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.8E-10 6.2E-15 121.4 19.7 166 116-287 8-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.2 1.8E-09 6.3E-14 93.8 21.1 127 402-531 45-171 (186)
82 4i17_A Hypothetical protein; T 99.2 2.2E-09 7.5E-14 97.2 21.3 209 115-335 5-220 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.2 6E-10 2.1E-14 117.5 19.1 167 149-322 6-173 (723)
84 4i17_A Hypothetical protein; T 99.2 7E-09 2.4E-13 93.8 23.0 191 366-568 9-209 (228)
85 3edt_B KLC 2, kinesin light ch 99.1 5.2E-10 1.8E-14 104.9 14.7 144 117-287 43-197 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 9.1E-10 3.1E-14 103.2 15.1 201 366-567 45-280 (283)
87 2fo7_A Synthetic consensus TPR 99.1 8.4E-09 2.9E-13 84.1 16.6 128 119-248 3-130 (136)
88 3mv2_B Coatomer subunit epsilo 99.1 5.4E-08 1.8E-12 89.9 23.3 60 368-427 104-164 (310)
89 3qky_A Outer membrane assembly 99.0 1.3E-08 4.5E-13 94.2 19.4 171 115-288 13-224 (261)
90 3mv2_B Coatomer subunit epsilo 99.0 9.5E-08 3.2E-12 88.2 24.6 79 278-357 85-164 (310)
91 1qqe_A Vesicular transport pro 99.0 1.3E-08 4.4E-13 95.9 19.5 203 371-579 44-276 (292)
92 2uy1_A Cleavage stimulation fa 99.0 8.4E-07 2.9E-11 89.7 32.6 100 133-249 11-117 (493)
93 2pzi_A Probable serine/threoni 99.0 1E-08 3.5E-13 108.6 17.7 165 100-273 410-582 (681)
94 3qky_A Outer membrane assembly 99.0 2.9E-08 9.9E-13 91.8 18.7 106 149-254 12-130 (261)
95 3dra_A Protein farnesyltransfe 99.0 3.1E-07 1.1E-11 85.7 25.5 180 87-274 39-235 (306)
96 3urz_A Uncharacterized protein 99.0 1.9E-08 6.4E-13 89.5 16.6 168 119-295 6-191 (208)
97 1qqe_A Vesicular transport pro 99.0 3.6E-08 1.2E-12 92.8 19.4 207 309-532 32-268 (292)
98 2fo7_A Synthetic consensus TPR 99.0 6.3E-08 2.2E-12 78.8 18.3 123 370-495 7-129 (136)
99 3dra_A Protein farnesyltransfe 99.0 3.4E-07 1.2E-11 85.5 25.1 233 132-372 48-301 (306)
100 2yhc_A BAMD, UPF0169 lipoprote 99.0 9.2E-08 3.1E-12 86.2 20.5 184 117-324 4-214 (225)
101 2r5s_A Uncharacterized protein 98.9 1.3E-08 4.4E-13 87.8 13.4 162 120-286 9-171 (176)
102 2uy1_A Cleavage stimulation fa 98.9 5E-06 1.7E-10 84.0 34.3 123 401-531 288-411 (493)
103 3qou_A Protein YBBN; thioredox 98.9 3.3E-08 1.1E-12 92.8 16.0 166 116-285 116-281 (287)
104 3urz_A Uncharacterized protein 98.9 7E-08 2.4E-12 85.7 17.2 96 155-251 7-118 (208)
105 2pzi_A Probable serine/threoni 98.9 1.8E-08 6E-13 106.9 14.8 153 128-287 402-562 (681)
106 2ifu_A Gamma-SNAP; membrane fu 98.8 4.2E-08 1.4E-12 93.2 14.9 159 371-531 43-222 (307)
107 3rjv_A Putative SEL1 repeat pr 98.8 5.3E-07 1.8E-11 80.2 21.2 177 382-570 4-199 (212)
108 4ga2_A E3 SUMO-protein ligase 98.8 2.8E-08 9.5E-13 83.0 11.4 133 99-235 15-148 (150)
109 4ga2_A E3 SUMO-protein ligase 98.8 1E-08 3.6E-13 85.6 8.7 108 130-239 10-117 (150)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.2E-07 1.4E-11 81.8 19.9 188 152-361 4-216 (225)
111 2r5s_A Uncharacterized protein 98.8 4.1E-08 1.4E-12 84.6 12.5 161 83-248 9-171 (176)
112 3qou_A Protein YBBN; thioredox 98.8 7.9E-08 2.7E-12 90.2 15.0 167 149-321 114-282 (287)
113 3rjv_A Putative SEL1 repeat pr 98.8 1.3E-06 4.3E-11 77.7 21.6 176 204-394 4-198 (212)
114 2vsy_A XCC0866; transferase, g 98.8 1.1E-07 3.9E-12 98.8 17.0 156 94-254 3-161 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.6E-07 5.5E-12 89.1 16.6 127 229-356 44-182 (307)
116 2vsy_A XCC0866; transferase, g 98.8 1.6E-07 5.5E-12 97.7 17.8 152 131-288 3-157 (568)
117 3q7a_A Farnesyltransferase alp 98.7 4.7E-06 1.6E-10 78.6 24.9 161 87-251 60-238 (349)
118 3q7a_A Farnesyltransferase alp 98.7 7.4E-06 2.5E-10 77.2 24.8 235 131-372 68-345 (349)
119 3u3w_A Transcriptional activat 98.7 3E-06 1E-10 79.6 22.3 129 228-356 82-223 (293)
120 3u3w_A Transcriptional activat 98.7 5.5E-06 1.9E-10 77.8 23.1 163 405-567 81-265 (293)
121 1a17_A Serine/threonine protei 98.7 9E-07 3.1E-11 75.0 15.8 128 118-247 14-143 (166)
122 4gco_A Protein STI-1; structur 98.6 6.5E-07 2.2E-11 71.9 14.0 96 119-215 15-110 (126)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.5E-06 5E-11 77.3 17.5 128 119-251 8-151 (213)
124 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.6E-11 69.6 14.6 98 117-215 9-106 (125)
125 4f3v_A ESX-1 secretion system 98.6 2.4E-06 8.2E-11 77.8 17.5 189 164-360 18-239 (282)
126 3gw4_A Uncharacterized protein 98.6 5.3E-07 1.8E-11 79.5 12.7 157 129-286 4-174 (203)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5E-06 1.7E-10 73.8 19.2 124 369-498 11-150 (213)
128 2lni_A Stress-induced-phosphop 98.6 1.3E-06 4.5E-11 70.7 14.0 97 117-214 16-112 (133)
129 4gco_A Protein STI-1; structur 98.6 1.6E-06 5.5E-11 69.6 14.0 99 153-252 14-112 (126)
130 3gyz_A Chaperone protein IPGC; 98.6 3.9E-07 1.3E-11 75.6 10.6 98 117-215 36-133 (151)
131 3dss_A Geranylgeranyl transfer 98.6 5.6E-05 1.9E-09 70.9 26.3 190 91-288 40-267 (331)
132 2qfc_A PLCR protein; TPR, HTH, 98.5 6.6E-06 2.3E-10 77.3 20.1 168 187-354 76-262 (293)
133 2vyi_A SGTA protein; chaperone 98.5 1.5E-06 5.2E-11 69.9 13.5 118 117-236 12-129 (131)
134 3gyz_A Chaperone protein IPGC; 98.5 1.9E-07 6.4E-12 77.6 7.8 98 153-251 37-134 (151)
135 2qfc_A PLCR protein; TPR, HTH, 98.5 5.2E-06 1.8E-10 78.0 18.9 168 155-322 78-265 (293)
136 4f3v_A ESX-1 secretion system 98.5 1.2E-06 4E-11 79.8 13.6 190 129-324 18-238 (282)
137 1a17_A Serine/threonine protei 98.5 2.5E-06 8.5E-11 72.2 15.1 128 153-285 14-143 (166)
138 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.1E-11 75.3 12.5 121 91-215 21-144 (177)
139 2c2l_A CHIP, carboxy terminus 98.5 1.3E-06 4.6E-11 81.4 13.3 95 118-213 5-99 (281)
140 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.4E-11 76.4 13.1 124 163-286 3-134 (203)
141 2c2l_A CHIP, carboxy terminus 98.5 3.6E-07 1.2E-11 85.3 9.1 195 151-357 3-198 (281)
142 2vgx_A Chaperone SYCD; alterna 98.5 6.4E-07 2.2E-11 74.3 9.6 48 164-211 33-80 (148)
143 2vgx_A Chaperone SYCD; alterna 98.5 1.9E-06 6.5E-11 71.5 12.4 109 104-215 10-118 (148)
144 2e2e_A Formate-dependent nitri 98.5 1.6E-06 5.6E-11 74.4 12.4 125 128-254 21-148 (177)
145 2lni_A Stress-induced-phosphop 98.5 2.6E-06 8.9E-11 68.9 13.0 119 150-273 14-132 (133)
146 1na0_A Designed protein CTPR3; 98.5 4.9E-06 1.7E-10 66.2 14.4 99 152-251 9-107 (125)
147 1p5q_A FKBP52, FK506-binding p 98.4 3.7E-06 1.3E-10 80.7 15.3 123 117-240 147-283 (336)
148 2xcb_A PCRH, regulatory protei 98.4 1.7E-06 5.7E-11 71.3 10.8 99 116-215 17-115 (142)
149 3upv_A Heat shock protein STI1 98.4 4.3E-06 1.5E-10 67.1 12.9 98 117-215 4-101 (126)
150 2vyi_A SGTA protein; chaperone 98.4 5.1E-06 1.7E-10 66.8 13.2 118 152-274 12-129 (131)
151 1elw_A TPR1-domain of HOP; HOP 98.4 9.3E-06 3.2E-10 63.8 14.5 98 117-215 4-101 (118)
152 3dss_A Geranylgeranyl transfer 98.4 0.00044 1.5E-08 64.9 26.9 166 128-300 40-233 (331)
153 2kck_A TPR repeat; tetratricop 98.4 4.6E-06 1.6E-10 64.9 11.6 99 116-215 5-106 (112)
154 2xcb_A PCRH, regulatory protei 98.3 3.3E-06 1.1E-10 69.5 10.3 96 154-250 20-115 (142)
155 1p5q_A FKBP52, FK506-binding p 98.3 1.8E-05 6.1E-10 75.9 16.8 86 366-453 198-283 (336)
156 3upv_A Heat shock protein STI1 98.3 1.2E-05 4.2E-10 64.3 12.9 97 153-250 5-101 (126)
157 2fbn_A 70 kDa peptidylprolyl i 98.3 9.8E-07 3.3E-11 77.5 6.8 95 155-250 41-151 (198)
158 1hxi_A PEX5, peroxisome target 98.3 7.8E-06 2.7E-10 65.0 11.3 95 120-215 20-114 (121)
159 3q49_B STIP1 homology and U bo 98.3 1.6E-05 5.4E-10 64.7 13.5 99 115-214 7-105 (137)
160 3sz7_A HSC70 cochaperone (SGT) 98.3 1.5E-05 5.2E-10 67.3 13.5 101 115-216 9-109 (164)
161 1elw_A TPR1-domain of HOP; HOP 98.3 3.3E-05 1.1E-09 60.5 14.7 98 153-251 5-102 (118)
162 4gcn_A Protein STI-1; structur 98.3 1.4E-05 4.8E-10 64.1 12.5 95 119-214 10-111 (127)
163 2fbn_A 70 kDa peptidylprolyl i 98.2 1.3E-05 4.4E-10 70.3 13.1 128 118-247 39-183 (198)
164 1elr_A TPR2A-domain of HOP; HO 98.2 9.6E-06 3.3E-10 65.1 11.1 97 118-215 5-108 (131)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 4E-05 1.4E-09 64.7 15.2 99 433-533 10-108 (164)
166 2kck_A TPR repeat; tetratricop 98.2 1.1E-05 3.8E-10 62.6 10.9 101 185-288 5-106 (112)
167 4gcn_A Protein STI-1; structur 98.2 2.9E-05 1E-09 62.2 13.4 104 471-577 10-119 (127)
168 2dba_A Smooth muscle cell asso 98.2 3.4E-05 1.2E-09 63.5 14.2 103 83-190 31-137 (148)
169 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.6E-10 64.2 10.5 97 155-252 20-116 (121)
170 3q49_B STIP1 homology and U bo 98.2 2.9E-05 1E-09 63.0 13.2 99 150-249 7-105 (137)
171 2dba_A Smooth muscle cell asso 98.2 8.4E-05 2.9E-09 61.1 15.9 97 469-568 28-128 (148)
172 4b4t_Q 26S proteasome regulato 98.1 0.00017 5.8E-09 71.8 20.5 198 124-321 11-243 (434)
173 4b4t_Q 26S proteasome regulato 98.1 0.0002 6.8E-09 71.3 20.7 165 367-531 58-243 (434)
174 1wao_1 Serine/threonine protei 98.1 1.6E-05 5.5E-10 80.1 12.5 118 126-245 15-134 (477)
175 1elr_A TPR2A-domain of HOP; HO 98.1 4.8E-05 1.6E-09 60.9 12.2 93 369-462 9-107 (131)
176 1dce_A Protein (RAB geranylger 98.1 0.00012 4.2E-09 75.0 17.7 181 89-277 37-244 (567)
177 2xev_A YBGF; tetratricopeptide 98.0 9.8E-05 3.4E-09 59.1 13.5 93 122-215 7-105 (129)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.5E-05 2.6E-09 74.9 14.6 121 118-240 269-404 (457)
179 3ro3_A PINS homolog, G-protein 98.0 5.9E-05 2E-09 63.0 11.9 133 435-567 10-157 (164)
180 1wao_1 Serine/threonine protei 98.0 2E-05 7E-10 79.4 9.8 119 160-283 14-134 (477)
181 3ro3_A PINS homolog, G-protein 98.0 4.5E-05 1.6E-09 63.7 10.6 64 223-286 91-156 (164)
182 1ihg_A Cyclophilin 40; ppiase 98.0 6.2E-05 2.1E-09 72.9 12.8 138 118-279 224-361 (370)
183 3rkv_A Putative peptidylprolyl 97.9 0.0001 3.6E-09 61.9 12.1 99 117-215 11-126 (162)
184 2xev_A YBGF; tetratricopeptide 97.9 0.00014 4.7E-09 58.2 12.2 93 158-251 8-106 (129)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 9.2E-05 3.1E-09 74.2 13.5 123 152-279 268-405 (457)
186 3k9i_A BH0479 protein; putativ 97.9 2.1E-05 7.1E-10 62.0 6.6 84 131-214 4-89 (117)
187 2hr2_A Hypothetical protein; a 97.9 0.00018 6.2E-09 58.9 11.9 97 118-214 12-130 (159)
188 3k9i_A BH0479 protein; putativ 97.9 2.9E-05 9.8E-10 61.2 6.7 86 482-568 3-90 (117)
189 2if4_A ATFKBP42; FKBP-like, al 97.8 4.1E-05 1.4E-09 73.4 9.0 148 118-288 180-328 (338)
190 1ihg_A Cyclophilin 40; ppiase 97.8 0.00015 5.2E-09 70.2 12.9 137 154-315 225-362 (370)
191 1dce_A Protein (RAB geranylger 97.8 0.001 3.6E-08 68.2 19.4 171 131-309 43-241 (567)
192 3rkv_A Putative peptidylprolyl 97.8 0.00014 4.8E-09 61.0 10.4 115 153-288 12-126 (162)
193 2l6j_A TPR repeat-containing p 97.7 2.7E-05 9.2E-10 60.5 4.4 89 117-206 4-98 (111)
194 2hr2_A Hypothetical protein; a 97.7 0.00037 1.3E-08 57.1 11.0 111 154-287 13-130 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00015 5.2E-09 69.4 10.0 147 83-251 182-329 (338)
196 1klx_A Cysteine rich protein B 97.7 0.0015 5.1E-08 52.9 14.4 110 449-569 10-127 (138)
197 1zu2_A Mitochondrial import re 97.6 0.00014 4.8E-09 59.5 7.8 98 129-229 14-132 (158)
198 2kat_A Uncharacterized protein 97.6 0.00054 1.9E-08 53.4 11.0 80 100-182 4-83 (115)
199 2kat_A Uncharacterized protein 97.6 0.00023 7.8E-09 55.6 8.5 80 135-215 3-82 (115)
200 1klx_A Cysteine rich protein B 97.6 0.0024 8.2E-08 51.7 14.8 110 414-534 10-127 (138)
201 1na3_A Designed protein CTPR2; 97.6 0.00058 2E-08 50.3 10.3 80 117-197 9-88 (91)
202 2l6j_A TPR repeat-containing p 97.6 4.3E-05 1.5E-09 59.3 3.9 89 151-241 3-98 (111)
203 1na3_A Designed protein CTPR2; 97.5 0.001 3.5E-08 48.9 9.9 80 152-232 9-88 (91)
204 3n71_A Histone lysine methyltr 97.4 0.0013 4.6E-08 65.7 12.7 26 260-285 394-419 (490)
205 3n71_A Histone lysine methyltr 97.4 0.00084 2.9E-08 67.2 11.0 92 231-322 319-421 (490)
206 3ma5_A Tetratricopeptide repea 97.3 0.0014 4.8E-08 49.5 8.7 64 116-180 6-69 (100)
207 3ma5_A Tetratricopeptide repea 97.2 0.0011 3.7E-08 50.2 8.0 66 149-214 4-69 (100)
208 1zu2_A Mitochondrial import re 97.1 0.0019 6.5E-08 52.8 8.1 71 164-235 14-94 (158)
209 2kc7_A BFR218_protein; tetratr 96.9 0.0036 1.2E-07 47.0 7.7 65 124-189 7-72 (99)
210 3ly7_A Transcriptional activat 96.8 0.063 2.1E-06 50.6 16.6 71 220-297 276-346 (372)
211 3u64_A Protein TP_0956; tetrat 96.5 0.034 1.2E-06 50.2 12.4 92 275-368 179-281 (301)
212 2kc7_A BFR218_protein; tetratr 96.5 0.0055 1.9E-07 45.9 6.4 58 159-216 7-65 (99)
213 3ly7_A Transcriptional activat 96.5 0.084 2.9E-06 49.7 15.2 64 294-359 277-340 (372)
214 3qww_A SET and MYND domain-con 96.4 0.014 4.9E-07 57.2 10.5 86 482-567 311-410 (433)
215 3mkq_A Coatomer beta'-subunit; 96.4 0.053 1.8E-06 58.7 15.8 157 371-566 606-763 (814)
216 3bee_A Putative YFRE protein; 96.3 0.045 1.5E-06 40.3 10.3 67 150-216 4-73 (93)
217 3qwp_A SET and MYND domain-con 96.3 0.023 7.9E-07 55.8 11.1 90 478-567 296-399 (429)
218 3mkq_B Coatomer subunit alpha; 96.3 0.28 9.7E-06 40.6 15.5 99 163-284 16-114 (177)
219 3lvg_A Clathrin heavy chain 1; 96.3 0.00068 2.3E-08 65.1 -0.1 232 83-349 86-324 (624)
220 1wy6_A Hypothetical protein ST 96.2 0.31 1.1E-05 37.8 14.9 59 405-464 97-155 (172)
221 3mkq_A Coatomer beta'-subunit; 96.2 0.065 2.2E-06 58.0 15.1 132 119-285 631-762 (814)
222 3bee_A Putative YFRE protein; 96.2 0.063 2.2E-06 39.5 10.4 70 114-184 3-75 (93)
223 3qww_A SET and MYND domain-con 96.1 0.029 9.9E-07 55.0 10.8 86 447-532 311-410 (433)
224 3u64_A Protein TP_0956; tetrat 95.9 0.071 2.4E-06 48.1 11.2 106 485-600 179-295 (301)
225 3qwp_A SET and MYND domain-con 95.9 0.067 2.3E-06 52.5 12.0 90 267-356 295-398 (429)
226 3mkq_B Coatomer subunit alpha; 95.9 0.3 1E-05 40.5 13.8 131 441-601 12-142 (177)
227 1pc2_A Mitochondria fission pr 95.8 0.11 3.7E-06 41.9 10.8 77 137-214 18-99 (152)
228 2v5f_A Prolyl 4-hydroxylase su 95.8 0.097 3.3E-06 39.5 10.1 73 116-188 4-82 (104)
229 4ady_A RPN2, 26S proteasome re 95.6 3.1 0.00011 44.5 32.6 271 305-585 385-672 (963)
230 1pc2_A Mitochondria fission pr 95.4 0.14 4.8E-06 41.3 10.2 78 488-567 17-99 (152)
231 4b4t_P 26S proteasome regulato 95.4 2.3 7.9E-05 41.8 21.6 94 298-391 141-245 (445)
232 2v5f_A Prolyl 4-hydroxylase su 95.1 0.25 8.7E-06 37.1 10.4 64 505-568 6-75 (104)
233 1wy6_A Hypothetical protein ST 94.8 1.1 3.7E-05 34.9 14.2 67 469-536 91-157 (172)
234 4h7y_A Dual specificity protei 94.8 0.37 1.3E-05 38.4 10.4 114 468-584 12-138 (161)
235 4h7y_A Dual specificity protei 94.1 1.8 6E-05 34.5 13.0 54 200-254 74-127 (161)
236 3lvg_A Clathrin heavy chain 1; 93.0 6.2E-05 2.1E-09 72.0 -16.5 262 82-384 56-324 (624)
237 1nzn_A CGI-135 protein, fissio 92.4 0.63 2.2E-05 36.0 7.9 26 226-251 79-104 (126)
238 1nzn_A CGI-135 protein, fissio 92.0 1.2 4E-05 34.5 9.0 80 383-463 20-103 (126)
239 4b4t_P 26S proteasome regulato 91.6 11 0.00037 37.0 22.1 255 99-355 34-321 (445)
240 4gns_B Protein CSD3, chitin bi 91.5 1.1 3.7E-05 46.9 11.1 126 122-248 253-398 (754)
241 1v54_E Cytochrome C oxidase po 91.5 1.1 3.7E-05 32.7 7.6 59 135-193 28-86 (109)
242 2ff4_A Probable regulatory pro 90.2 0.92 3.1E-05 43.7 8.7 96 117-212 112-231 (388)
243 2ff4_A Probable regulatory pro 89.4 1.8 6.3E-05 41.6 10.1 70 508-578 175-249 (388)
244 4gns_B Protein CSD3, chitin bi 88.8 2.5 8.5E-05 44.2 11.0 51 536-588 610-660 (754)
245 1v54_E Cytochrome C oxidase po 88.7 5 0.00017 29.3 9.1 50 484-533 25-74 (109)
246 4fhn_B Nucleoporin NUP120; pro 88.1 36 0.0012 38.1 20.7 53 225-285 816-868 (1139)
247 2y69_E Cytochrome C oxidase su 87.5 2.8 9.7E-05 32.4 7.6 56 138-193 74-129 (152)
248 1qsa_A Protein (soluble lytic 85.3 36 0.0012 34.9 33.0 119 236-357 229-347 (618)
249 2y69_E Cytochrome C oxidase su 84.8 9 0.00031 29.7 9.1 50 484-533 68-117 (152)
250 1zbp_A Hypothetical protein VP 83.6 4.3 0.00015 36.1 8.1 115 125-250 5-129 (273)
251 4fhn_B Nucleoporin NUP120; pro 83.2 13 0.00046 41.5 14.1 84 507-592 902-989 (1139)
252 3ffl_A Anaphase-promoting comp 82.7 10 0.00035 30.8 9.4 129 112-253 13-154 (167)
253 2wpv_A GET4, UPF0363 protein Y 82.1 30 0.001 31.7 21.4 166 332-531 36-215 (312)
254 4ady_A RPN2, 26S proteasome re 81.4 63 0.0021 34.8 35.1 313 267-589 382-721 (963)
255 3o48_A Mitochondria fission 1 79.8 19 0.00066 27.9 10.1 72 114-186 37-112 (134)
256 3o48_A Mitochondria fission 1 78.4 22 0.00074 27.7 11.0 73 501-575 37-112 (134)
257 3ffl_A Anaphase-promoting comp 77.1 17 0.00057 29.6 8.9 26 436-461 124-149 (167)
258 3esl_A Checkpoint serine/threo 76.0 17 0.00057 30.7 8.9 53 485-537 95-148 (202)
259 2wpv_A GET4, UPF0363 protein Y 75.2 50 0.0017 30.2 22.8 166 157-356 38-215 (312)
260 1y8m_A FIS1; mitochondria, unk 74.7 29 0.001 27.3 12.1 73 114-187 36-112 (144)
261 4b4t_R RPN7, 26S proteasome re 74.4 20 0.00069 34.8 10.8 61 401-461 133-195 (429)
262 3eiq_C Programmed cell death p 74.0 36 0.0012 31.9 11.7 26 331-356 56-81 (358)
263 3lpz_A GET4 (YOR164C homolog); 73.3 58 0.002 30.1 23.4 167 332-532 38-215 (336)
264 1zbp_A Hypothetical protein VP 72.3 7.6 0.00026 34.5 6.3 55 161-215 6-60 (273)
265 4b4t_R RPN7, 26S proteasome re 71.8 75 0.0026 30.7 14.5 102 186-287 131-236 (429)
266 1n11_A Ankyrin; clathrin, BAND 68.4 36 0.0012 32.9 11.3 18 228-245 117-134 (437)
267 1y8m_A FIS1; mitochondria, unk 66.6 46 0.0016 26.2 13.0 66 502-567 37-105 (144)
268 4a1g_A Mitotic checkpoint seri 66.2 32 0.0011 27.5 8.2 53 522-574 83-136 (152)
269 3eiq_C Programmed cell death p 64.3 85 0.0029 29.4 12.0 73 261-334 219-293 (358)
270 2wvi_A Mitotic checkpoint seri 62.2 44 0.0015 27.1 8.4 53 523-575 79-132 (164)
271 2zu6_B Programmed cell death p 62.1 31 0.0011 31.5 8.5 25 332-356 6-30 (307)
272 2uwj_G Type III export protein 61.9 42 0.0014 24.4 7.1 50 374-429 49-98 (115)
273 2p58_C Putative type III secre 61.5 44 0.0015 24.4 7.9 50 374-429 50-99 (116)
274 1qsa_A Protein (soluble lytic 61.4 1.5E+02 0.005 30.3 34.3 268 107-392 62-347 (618)
275 3esl_A Checkpoint serine/threo 60.9 69 0.0023 27.0 9.6 57 447-503 92-149 (202)
276 2p58_C Putative type III secre 58.1 52 0.0018 24.0 7.4 78 484-569 22-99 (116)
277 1wdy_A 2-5A-dependent ribonucl 57.8 41 0.0014 29.8 8.9 14 384-397 199-212 (285)
278 2d2s_A Exocyst complex compone 56.3 63 0.0022 28.1 9.1 89 265-356 24-118 (235)
279 2zu6_B Programmed cell death p 54.4 92 0.0031 28.4 10.3 70 261-331 168-239 (307)
280 1k1a_A B-cell lymphoma 3-encod 53.4 74 0.0025 27.2 9.6 20 228-247 83-102 (241)
281 2rfa_A Transient receptor pote 52.1 65 0.0022 27.5 8.9 59 227-290 124-182 (232)
282 3jxi_A Vanilloid receptor-rela 51.2 14 0.00047 32.7 4.3 117 124-245 9-161 (260)
283 1wdy_A 2-5A-dependent ribonucl 51.2 33 0.0011 30.4 7.1 18 123-140 42-59 (285)
284 2d2s_A Exocyst complex compone 48.8 86 0.0029 27.3 8.8 24 122-145 23-46 (235)
285 2qx5_A Nucleoporin NIC96; mRNA 48.3 2.4E+02 0.0083 29.0 13.2 80 439-530 299-382 (661)
286 3txn_A 26S proteasome regulato 46.8 2E+02 0.0067 27.4 25.9 92 404-495 104-207 (394)
287 1k1a_A B-cell lymphoma 3-encod 45.7 69 0.0023 27.4 8.1 24 228-251 13-36 (241)
288 2nsz_A Programmed cell death p 45.4 88 0.003 24.1 7.5 64 472-536 10-75 (129)
289 2uwj_G Type III export protein 45.4 86 0.003 22.8 7.2 48 444-497 49-96 (115)
290 3bu8_A Telomeric repeat-bindin 45.0 72 0.0025 27.0 7.0 51 133-183 88-145 (235)
291 3txn_A 26S proteasome regulato 44.2 2.2E+02 0.0074 27.1 27.5 92 431-534 253-344 (394)
292 4b4t_S RPN3, 26S proteasome re 43.2 2.1E+02 0.0071 28.3 11.2 68 117-184 231-302 (523)
293 3lpz_A GET4 (YOR164C homolog); 43.1 2E+02 0.007 26.5 27.4 167 367-567 38-215 (336)
294 4a1g_A Mitotic checkpoint seri 42.6 1.3E+02 0.0044 24.0 9.4 50 488-537 84-134 (152)
295 2ion_A PDCD4, programmed cell 40.2 56 0.0019 26.1 5.7 64 262-326 12-77 (152)
296 3kea_A K1L; tropism, ANK repea 39.0 1.4E+02 0.0048 26.6 9.2 117 123-248 65-185 (285)
297 2etb_A Transient receptor pote 38.1 48 0.0016 29.0 5.8 55 124-178 6-69 (256)
298 2r9g_A AAA ATPase, central reg 37.8 1.8E+02 0.0062 24.4 10.2 63 369-432 16-86 (204)
299 2nsz_A Programmed cell death p 37.4 1.4E+02 0.0047 22.9 9.3 65 436-501 9-75 (129)
300 1n11_A Ankyrin; clathrin, BAND 36.8 1.1E+02 0.0039 29.2 8.8 18 228-245 84-101 (437)
301 2wvi_A Mitotic checkpoint seri 35.7 1.7E+02 0.006 23.6 9.2 53 488-540 79-132 (164)
302 4aez_C MAD3, mitotic spindle c 35.1 1.4E+02 0.0049 25.5 7.7 52 521-572 131-183 (223)
303 3t8k_A Uncharacterized protein 35.1 1.9E+02 0.0064 23.7 11.3 130 195-324 44-181 (186)
304 3l6a_A Eukaryotic translation 34.9 2.3E+02 0.0079 26.5 10.0 26 223-248 14-39 (364)
305 2ion_A PDCD4, programmed cell 34.9 1.2E+02 0.0042 24.1 6.9 23 121-143 13-35 (152)
306 3eu9_A Huntingtin-interacting 34.6 50 0.0017 28.2 5.3 17 228-244 113-129 (240)
307 3l6a_A Eukaryotic translation 34.3 2.9E+02 0.01 25.8 13.0 27 331-357 14-40 (364)
308 3mv2_A Coatomer subunit alpha; 33.9 2.8E+02 0.0095 25.4 10.8 18 445-462 125-142 (325)
309 3ygs_P Procaspase 9; apoptosis 32.9 1.4E+02 0.0047 21.5 6.7 37 235-278 51-87 (97)
310 3hra_A Ankyrin repeat family p 32.8 54 0.0019 27.1 5.0 39 559-597 158-198 (201)
311 3kea_A K1L; tropism, ANK repea 32.6 1.1E+02 0.0039 27.2 7.5 17 301-317 66-82 (285)
312 3t8k_A Uncharacterized protein 31.6 1.3E+02 0.0045 24.7 7.1 67 227-293 41-108 (186)
313 2xig_A Ferric uptake regulatio 31.5 1.5E+02 0.005 23.5 7.0 55 182-236 22-76 (150)
314 4g8k_A 2-5A-dependent ribonucl 31.0 2.3E+02 0.0078 25.8 9.5 289 190-503 26-328 (337)
315 3hra_A Ankyrin repeat family p 30.6 1.1E+02 0.0039 25.0 6.8 15 230-244 78-92 (201)
316 3v31_A Ankyrin repeat family A 30.5 2E+02 0.0067 22.6 9.7 17 229-245 74-90 (167)
317 3bu8_A Telomeric repeat-bindin 30.1 2.6E+02 0.0087 23.8 9.6 63 520-584 88-157 (235)
318 3ygs_P Procaspase 9; apoptosis 29.7 1.6E+02 0.0054 21.2 7.2 40 200-243 51-90 (97)
319 3ltm_A Alpha-REP4; protein eng 29.7 2.4E+02 0.0082 23.3 17.8 198 85-309 6-203 (211)
320 3aji_A 26S proteasome non-ATPa 29.7 2.5E+02 0.0085 23.5 10.0 19 124-142 10-28 (231)
321 2pnn_A Transient receptor pote 29.6 67 0.0023 28.4 5.3 20 226-245 150-169 (273)
322 3b7b_A Euchromatic histone-lys 29.5 1.3E+02 0.0043 25.6 7.0 17 124-140 48-64 (237)
323 2fe3_A Peroxide operon regulat 29.2 1.7E+02 0.0059 22.9 7.0 46 190-235 25-70 (145)
324 3eu9_A Huntingtin-interacting 28.6 1.5E+02 0.0051 25.1 7.4 16 409-424 217-232 (240)
325 2fe3_A Peroxide operon regulat 28.0 1.6E+02 0.0053 23.1 6.5 59 355-414 13-71 (145)
326 2f6m_A Suppressor protein STP2 27.9 85 0.0029 20.7 3.9 23 124-146 9-31 (65)
327 3b7b_A Euchromatic histone-lys 27.8 79 0.0027 27.0 5.3 18 375-392 218-235 (237)
328 2w57_A Ferric uptake regulatio 27.6 1.6E+02 0.0054 23.3 6.6 56 182-237 12-68 (150)
329 4fke_A Aminopeptidase N; zinc 27.5 6.1E+02 0.021 27.3 15.7 89 404-497 691-786 (909)
330 2xig_A Ferric uptake regulatio 27.1 1.9E+02 0.0066 22.8 7.0 33 556-588 43-75 (150)
331 1mzb_A Ferric uptake regulatio 25.8 1.6E+02 0.0054 22.8 6.1 48 189-236 20-68 (136)
332 3eyy_A Putative iron uptake re 25.8 1.3E+02 0.0045 23.6 5.7 46 190-236 22-67 (145)
333 3jxi_A Vanilloid receptor-rela 25.8 28 0.00097 30.6 2.0 19 581-599 229-247 (260)
334 1ug3_A EIF4GI, eukaryotic prot 25.7 96 0.0033 28.8 5.6 24 224-247 14-37 (339)
335 3bge_A Predicted ATPase; struc 25.2 3E+02 0.01 23.0 9.4 45 369-413 9-56 (201)
336 3pvs_A Replication-associated 25.1 4.7E+02 0.016 25.2 13.8 38 376-413 267-304 (447)
337 3eyy_A Putative iron uptake re 24.8 1.5E+02 0.005 23.3 5.8 58 355-414 10-67 (145)
338 3aji_A 26S proteasome non-ATPa 24.3 2.5E+02 0.0084 23.6 7.9 81 159-244 10-93 (231)
339 1mzb_A Ferric uptake regulatio 23.5 1.9E+02 0.0065 22.3 6.2 23 274-296 33-55 (136)
340 2rfa_A Transient receptor pote 23.4 2.1E+02 0.0073 24.0 7.4 19 228-246 41-59 (232)
341 3ctd_A Putative ATPase, AAA fa 22.6 3.5E+02 0.012 22.9 9.7 65 367-431 35-107 (213)
342 3mv2_A Coatomer subunit alpha; 22.6 4.4E+02 0.015 24.0 11.3 48 261-323 209-256 (325)
343 3mwm_A ZUR, putative metal upt 22.6 1.3E+02 0.0044 23.5 5.0 49 189-237 16-64 (139)
344 2w57_A Ferric uptake regulatio 22.4 2.1E+02 0.0073 22.5 6.4 40 265-304 22-62 (150)
345 2yru_A Steroid receptor RNA ac 22.3 1.6E+02 0.0055 22.2 5.2 19 162-180 71-89 (118)
346 4fjo_A DNA repair protein REV1 21.8 2.3E+02 0.0078 20.4 5.9 48 238-285 12-59 (97)
347 4b4t_S RPN3, 26S proteasome re 21.6 6E+02 0.02 25.1 11.2 68 185-252 230-301 (523)
348 2keb_A DNA polymerase subunit 21.3 2.4E+02 0.0081 20.4 6.7 31 523-553 28-58 (101)
349 1bd8_A P19INK4D CDK4/6 inhibit 21.2 1.2E+02 0.0041 23.6 4.8 153 120-285 2-156 (156)
350 2ijq_A Hypothetical protein; s 20.8 3.3E+02 0.011 21.9 7.7 63 186-249 33-103 (161)
351 2fu4_A Ferric uptake regulatio 20.5 2.1E+02 0.0071 19.4 6.5 34 202-235 33-66 (83)
352 4ets_A Ferric uptake regulatio 20.4 2E+02 0.007 23.0 5.9 52 185-236 31-84 (162)
353 2qx5_A Nucleoporin NIC96; mRNA 20.2 7.1E+02 0.024 25.5 21.3 44 189-233 155-198 (661)
354 3f3f_C Nucleoporin NUP85; stru 20.1 2.7E+02 0.0093 27.8 7.6 74 200-278 495-568 (570)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-41 Score=353.44 Aligned_cols=471 Identities=10% Similarity=0.010 Sum_probs=312.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHH
Confidence 56777888888888888888888888888754 467788888888888888888888888877543 467778888888
Q ss_pred hhhhcCcHHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccH
Q 007461 195 GYNKLHMYYSTILVYEKMKSA---------------GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFST 259 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 259 (603)
+|.+.|++++|+++|+++... +..++..+|+.++.+|.+.|++++|.++|+++...++.. .
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~ 234 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC----Y 234 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh----h
Confidence 888888888888888743221 223357788888888888888888888888887765432 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 260 HMYKILCDSLGKSGRAFEALKF---FRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~---~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
..+..+...+...+..+.+... +..+...+..+...+|..++..|.+.|++++|.++++++.+. +++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 4555555544443332222111 333433333334445555566666666677777776666554 35666667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
..|.+.|++++|.++|+++.+.++. +..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 7777777777777777766655542 45566666777777777777777777666443 345566666666677777777
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777666543 3456666677777777777777777777666542 3356666666677777777777777777766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 007461 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVID--RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT 570 (603)
Q Consensus 497 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 570 (603)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 542 225566667777777777777777777666554 44555 5566667777777777777777777666553
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 571 KLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 571 ~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+.+..+|..+..+|.+.|++++|.+.+++.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 335666666667777777777776666654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-40 Score=347.55 Aligned_cols=490 Identities=9% Similarity=-0.003 Sum_probs=411.4
Q ss_pred CCCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 76 AVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC 155 (603)
Q Consensus 76 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (603)
+.++...|+.++..+.+.++..+ |..+|+.+... .|+..++..++..|.+.|++++|+.+|+.+... +++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKC-AAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchH-HHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 33556669999999999999877 99999999854 578899999999999999999999999988643 6899999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcC----------------CcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDG----------------EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL 219 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 219 (603)
+.++.+|.+.|++++|.++|+++.... +.+..+|+.++.+|.+.|++++|+++|++|.+.+..
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 232 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK- 232 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-
Confidence 999999999999999999999643332 236889999999999999999999999999986532
Q ss_pred ChhhHHHHHHHHHHcCCHHHHH--HH-HHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 007461 220 DSGCYCQIMEAYYKIGDSEKVA--AL-FLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSI 296 (603)
Q Consensus 220 ~~~~~~~ll~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 296 (603)
+...+..+...+...++.+.+. .+ +..+...+.. ....+|+.++..|.+.|++++|.++|+++.+. .++..+
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 307 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA---FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDL 307 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH---HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH---HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHH
Confidence 4555665655444333222221 11 3344333221 12356777889999999999999999999875 578999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 007461 297 YASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK 376 (603)
Q Consensus 297 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 376 (603)
+..++..+.+.|++++|.++++++.+.+. .+..++..++.+|.+.|++++|.++++.+.+..+ .+..+|+.++..|.+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHH
Confidence 99999999999999999999999998763 3778899999999999999999999999987654 477889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHH
Q 007461 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWL 456 (603)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 456 (603)
.|++++|+++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++
T Consensus 386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998754 3467899999999999999999999999999875 56889999999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 457 VAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR----KVTPD--KVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 457 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++
T Consensus 464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99998863 457899999999999999999999999999775 66787 678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
.+.+. .+..+|..++.+|.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 543 ~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 543 LLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 98753 378899999999999999999999999999763 23455555555444
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=8.9e-31 Score=264.82 Aligned_cols=204 Identities=14% Similarity=0.160 Sum_probs=123.4
Q ss_pred HHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 007461 348 TLDVVESMKNAKLKISD-CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL---------YSK 417 (603)
Q Consensus 348 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~ 417 (603)
+..+.+.+.+++..... .+++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555555554332 34666667777777777777777777777777777777777777665543 455
Q ss_pred HHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 497 (603)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007461 498 RKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSK 551 (603)
Q Consensus 498 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
.|+.||..||++||.+|++.|++++|.+++++|++.+..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.2e-30 Score=263.98 Aligned_cols=207 Identities=14% Similarity=0.175 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---------H
Q 007461 311 KLAEELFKEAEEKGMLRDP-EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRG---------Y 380 (603)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~ 380 (603)
..++.+.+.+.+.+....+ .+++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456666777777766554 46888999999999999999999999999999999999999999987654 7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 381 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007461 461 KAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517 (603)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 517 (603)
.+.|+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.9e-27 Score=234.51 Aligned_cols=381 Identities=12% Similarity=0.085 Sum_probs=214.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++......|.+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455666777777777777776654 4445566666666777777777777777777776667777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFR 283 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (603)
+|+..|+++.+... .+..+|..+..++.+.|++++|.+.|+++...++.. ...+..+...+...|++++|.+.|+
T Consensus 85 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC----THHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777766431 134456677777777777777777777766654332 2456666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007461 284 DMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKIS 363 (603)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 363 (603)
++.+.. +.+..+|..+...+...|++++|...++++.+.+. .+...+..+...+...|++++|...|++..+.++ .+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence 666542 11345566666666666666666666666665432 2445555555555555555555555555544433 12
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 007461 364 DCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 443 (603)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (603)
..++..+...+.+.|++++|+..|+++. +.+ +.+..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAI-----------------------------------ELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------------HTC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------hhC-CCCHHHHHHHHHH
Confidence 3344444444444444444444444444 432 2233444444445
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007461 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMC 523 (603)
Q Consensus 444 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 523 (603)
+.+.|++++|.+.++++.+. .+.+..+|..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555554443 13344445555555555555555555555554321 12234455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007461 524 VKFYNEFRMNGGVIDRAIAGIMVGVFSKL 552 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
.+.++++.+.... +...|..+...+...
T Consensus 359 ~~~~~~a~~~~p~-~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 359 LMHYKEAIRISPT-FADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCC-CHHHHHhHHHHHHHc
Confidence 5555555443211 334444444444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.7e-27 Score=231.99 Aligned_cols=380 Identities=12% Similarity=0.043 Sum_probs=265.6
Q ss_pred HHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 007461 161 SCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 240 (603)
.+.+.|++++|.+.++.+....|.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34455666666666666655555555555555555555666666665555555432 22445555555555555555555
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEA 320 (603)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 320 (603)
.+.|+++...++. +..+|..+..++.+.|++++|++.|+++.+. .|+
T Consensus 87 ~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------------- 133 (388)
T 1w3b_A 87 IEHYRHALRLKPD----FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD--------------------------- 133 (388)
T ss_dssp HHHHHHHHHHCTT----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT---------------------------
T ss_pred HHHHHHHHHcCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------------
Confidence 5555555443322 1234555555555555555555555555443 222
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007461 321 EEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV 400 (603)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 400 (603)
+...+..+...+...|++++|.+.|+++.+.++ .+..+|..+...+...|++++|+..|+++.+.+ +.+..
T Consensus 134 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 204 (388)
T 1w3b_A 134 -------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLD 204 (388)
T ss_dssp -------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred -------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHH
Confidence 233444455555555555555555555555443 234556666667777777777777777776654 33566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 480 (603)
.+..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...+.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 78888888999999999999999988875 5568899999999999999999999999999862 335788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007461 481 RAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVK 560 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 560 (603)
+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+... .+...+..+..+|.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 45778899999999999999999999999987642 357789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 561 LLQDMKSEGTKLDERLYHSAMNALRDAG 588 (603)
Q Consensus 561 ~~~~m~~~g~~~~~~~~~~ll~a~~~~g 588 (603)
.++++.+.. +.+...|..+...+...|
T Consensus 361 ~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 999999752 234677777777777655
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.2e-24 Score=218.53 Aligned_cols=445 Identities=9% Similarity=-0.016 Sum_probs=307.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|...++++.+..|.+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4466777888888999999999999988876 68888888999999999999999999999888888888999999999
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
.+.|++++|+..|+++.+.+. ++......++..+.+......+.+.+..+......+... .++.-...........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL---STQPAKERKDKQENLP 159 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------CCC
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCChhhHHHhhccCCc
Confidence 999999999999999888753 344455555555554444444433332222111111000 0000000000001111
Q ss_pred HHHHHHHHHHHCCCC--------C-CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCCHHH
Q 007461 277 EALKFFRDMKEKGIL--------E-DPSIYASLICSFAS---ITEVKLAEELFKEAEE-----KGM--------LRDPEV 331 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~--------p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~ 331 (603)
....+...+...... | +...+......+.. .|++++|...++++.+ ... +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 111111111111000 2 13334334343443 7888888888888777 311 123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 411 (603)
+..+...+...|++++|...|+.+.+.++. ...+..+...+...|++++|+..++++.... +.+...+..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 777888888888888888888888877654 6778888888888888888888888887754 3456677888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKL 491 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 491 (603)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 899999999998888765 4467788888888888999999999998887752 33567788888888889999999998
Q ss_pred HHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 492 WKEMERRKVT-PD----KVSYTTVISAYNR---AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQ 563 (603)
Q Consensus 492 ~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 563 (603)
++++.+.... ++ ...+..+...+.. .|++++|...++++.+.... +...+..+..+|.+.|++++|.+.++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888653211 11 2378888888888 89999999999988876433 56778888888999999999999999
Q ss_pred HHHhCCCCCCHH
Q 007461 564 DMKSEGTKLDER 575 (603)
Q Consensus 564 ~m~~~g~~~~~~ 575 (603)
++.+. .|+..
T Consensus 474 ~a~~~--~~~~~ 483 (514)
T 2gw1_A 474 ESADL--ARTME 483 (514)
T ss_dssp HHHHH--CSSHH
T ss_pred HHHHh--ccccH
Confidence 88875 35443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-23 Score=215.18 Aligned_cols=442 Identities=11% Similarity=-0.015 Sum_probs=330.2
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
+......+...++..+ |...|+.+.+. .|+...|..+..++.+.|++++|+..++.+.+.+ +.+..++..+..++
T Consensus 9 ~~~~g~~~~~~g~~~~-A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDD-AIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHTSCHHH-HHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHH-HHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 4555666778888877 99999999986 3799999999999999999999999999999886 66788999999999
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---CCHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI---GDSEK 239 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~ 239 (603)
...|++++|...|+.+...++.+......++..+........+.+.+..+...+..|+...+..-....... .....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999888777776667666666555555555444433332222222111111111111 11111
Q ss_pred HHHHHHHHHhCC---CCCCCccHHHHHHHHHHHhc---cCCHHHHHHHHHHHHH-----CCCCC--------CHHHHHHH
Q 007461 240 VAALFLECKSRK---LDSTPFSTHMYKILCDSLGK---SGRAFEALKFFRDMKE-----KGILE--------DPSIYASL 300 (603)
Q Consensus 240 a~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~~~~~l 300 (603)
+...+....... ....+.+...+......+.. .|++++|+..|+++.+ ....| +...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 111111111000 00012234455555555554 8999999999999987 31122 34577788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 007461 301 ICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY 380 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 380 (603)
...+...|++++|...++.+.+.... ...+..+...|...|++++|.+.++.+.+..+. +..++..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCH
Confidence 88899999999999999999987644 888899999999999999999999999887663 566889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 381 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
++|+..+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998865 3356788888999999999999999999998874 556788999999999999999999999998
Q ss_pred HHcCC-CCC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 461 KAKGC-EPN----VWIYNSLMDMHGR---AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 461 ~~~~~-~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
.+..- .++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 76411 111 3388899999999 999999999999998653 33567889999999999999999999999998
Q ss_pred CCC
Q 007461 533 NGG 535 (603)
Q Consensus 533 ~~~ 535 (603)
...
T Consensus 478 ~~~ 480 (514)
T 2gw1_A 478 LAR 480 (514)
T ss_dssp HCS
T ss_pred hcc
Confidence 643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.3e-22 Score=201.07 Aligned_cols=327 Identities=14% Similarity=-0.004 Sum_probs=170.1
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
+...+..+.... +.+...+..++..+.+.|++++|+.+|+.+.+.. +.+..++..+...+...|++++|...|+++.
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 4455667777777777777777777777776654 4556677777777777777777777777777
Q ss_pred hcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 007461 180 TDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDS---GCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP 256 (603)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 256 (603)
+.++.+..++..+...|.+.|++++|.+.|+++.+.+.. +. ..+..+...+..
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------
Confidence 766666667777777777777777777777776664321 22 344444443111
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 257 FSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336 (603)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
..+..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.. +.+..++..+.
T Consensus 144 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 218 (450)
T 2y4t_A 144 ---QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS 218 (450)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 012233344555566666666666655432 2244455555555555556555555555555442 22455555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----H
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI------------VNGFSKRRGYWAAVKVYEQLISQGCIPG-----Q 399 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~ 399 (603)
..|...|++++|.+.|+++.+..+. +...+..+ ...+.+.|++++|+..|+++.+.. |+ .
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~ 295 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTV 295 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHH
Confidence 6666666666666666655544331 22222222 344444444555555444444422 22 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA 462 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 462 (603)
..+..+...+.+.|++++|...++++.+.. +.+...|..+..+|.+.|++++|...+++..+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 234444444444444444444444444432 22344444444444444444444444444444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=6.7e-22 Score=200.87 Aligned_cols=329 Identities=12% Similarity=0.046 Sum_probs=219.4
Q ss_pred CCCh-hchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 77 VPDA-KKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC 155 (603)
Q Consensus 77 ~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (603)
.|+. ..+..+...+...++..+ |..+|+.+.+.. +.+...|..+...+...|++++|+..++.+.+.+ +.+..++
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~-A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLAD-ALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 4443 337777888888888877 999999998753 5678899999999999999999999999999886 5678899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCcch---hhHHHHHhh------------hhhcCcHHHHHHHHHHHHhCCCCCC
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDGEIAL---LAFNSAMGG------------YNKLHMYYSTILVYEKMKSAGIVLD 220 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~~~~~~a~~~~~~m~~~~~~p~ 220 (603)
..+...|.+.|++++|...|+++....+.+. .++..++.. +...|++++|+..|+++.+... .+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 176 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WD 176 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 9999999999999999999999999888777 888887655 5555555555555555554322 24
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 007461 221 SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS-IYAS 299 (603)
Q Consensus 221 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ 299 (603)
..++..+..+|.+.|++++|.+.|+++...++. +..+|..++..|...|++++|++.|+++... .|+.. .+..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 250 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKND----NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 250 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHH
Confidence 445555555555555555555555555443221 2344555555555555555555555555443 22221 1111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh
Q 007461 300 LICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKIS---DCISCAIVNGFSK 376 (603)
Q Consensus 300 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 376 (603)
+ .... .......+...+.+.|++++|.+.|+.+.+..+... ...|..+...+.+
T Consensus 251 ~-~~~~----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 251 Y-KQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp H-HHHH----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred H-HHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 1 0000 000112236677777888888888877776543211 2356777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHH
Q 007461 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441 (603)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (603)
.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+.
T Consensus 308 ~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 888888888888877653 3456777888888888888888888888887753 33444554444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.3e-21 Score=200.54 Aligned_cols=401 Identities=8% Similarity=0.003 Sum_probs=175.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...++++...+|.+..++..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34444555555555555555555555443 33445555555555555555555555555555555555555555555555
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------------------------
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL-------------------------- 252 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------------- 252 (603)
.|++++|+..|+.+ .. .|+ .....+..+...+....|...++.+....+
T Consensus 106 ~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 55555555555322 11 111 111112233333344445555544433211
Q ss_pred -------CCCCccHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHccCC
Q 007461 253 -------DSTPFSTHMYKILCDSLGKS--------GRAFEALKFFRDMKEKGILED--------PSIYASLICSFASITE 309 (603)
Q Consensus 253 -------~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~~~~~ll~~~~~~g~ 309 (603)
...+.....+..+...+... |++++|+.+|+++.+. .|+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 11110111122222222211 2455555555555443 222 1123333344444555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 310 VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389 (603)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (603)
+++|...++.+.+.. |+...+..+...|...|++++|.+.++.+.+..+ .+..+|..+...+...|++++|+..+++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 555555555555442 2344455555555555555555555555544433 1334455555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-----
Q 007461 390 LISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG----- 464 (603)
Q Consensus 390 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 464 (603)
..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+..
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 54432 1223444445555555555555555555554442 3334445555555555555555555555544321
Q ss_pred CCCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 465 CEPNVWIYNSLMDMHGRA----------KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 465 ~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.......+..+...+... |++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 000111122223334444 55555555555554331 113344445555555555555555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.2e-21 Score=203.76 Aligned_cols=402 Identities=11% Similarity=0.037 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+.+.|++++|+..|+++....|.+..+|..+..+|.+.|++++|++.|+++.+.+.. +..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 4567778888999999999999999999999999999999999999999999999999999987533 778899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCCCHHHH--------
Q 007461 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK------GILEDPSIY-------- 297 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~-------- 297 (603)
...|++++|...|+.+ ...+.. .+..+..+...+...+|...++++... ...|+....
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDF-------DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHcCCHHHHHHHHHHH-hcCCCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999743 333222 223344555566677888888888543 112222221
Q ss_pred ----------------------HHHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 007461 298 ----------------------ASLICSFAS--------ITEVKLAEELFKEAEEKGMLRDP-------EVCLKLVLMYI 340 (603)
Q Consensus 298 ----------------------~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 340 (603)
..+...+.. .|++++|..+++.+.+.... +. .++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 112112111 24788888888888876422 32 34666777888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007461 341 EEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEK 420 (603)
Q Consensus 341 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 420 (603)
..|++++|.+.|+...+.++. ..++..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 899999999999999887654 6778888899999999999999999988765 3467788888999999999999999
Q ss_pred HHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007461 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV 500 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 500 (603)
.+++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998875 4567788899999999999999999999998762 44567888899999999999999999999865421
Q ss_pred -----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 501 -----TPDKVSYTTVISAYNRA----------REFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 501 -----~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
......+......+... |++++|...++++.+.... +...+..+..+|.+.|++++|.+.+++.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11122244555667777 9999999999999886443 6678888999999999999999999999
Q ss_pred HhCC
Q 007461 566 KSEG 569 (603)
Q Consensus 566 ~~~g 569 (603)
.+..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8763
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.3e-18 Score=168.89 Aligned_cols=332 Identities=10% Similarity=-0.023 Sum_probs=194.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
++..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...++++....+.+..+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566777777788888888888888877765 45677777777778888888888888888777777777778888888
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCC--CChhhHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIV--LDSGCYCQI------------MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHM 261 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (603)
+...|++++|...|++..+.... .+...+..+ ...+...|++++|.+.++++....+. +..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~ 156 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW----DAEL 156 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----chHH
Confidence 88888888888888877765320 123333333 24444455555555555554443322 1234
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+..
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~---- 230 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ---- 230 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH----
Confidence 4444555555555555555555444431 113344444444444444444444444444433211 1111111000
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHH
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ----VTYASIINAYCRIALYSK 417 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~ 417 (603)
+. .......+...+.+.|++++|+..++++.+.... +. ..+..+...+...|++++
T Consensus 231 -------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 231 -------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp -------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 00 0000112355566777777777777776664311 22 224445667777788888
Q ss_pred HHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHh
Q 007461 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGR 481 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~ 481 (603)
|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+. .| +...+..+..+...
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 888888777764 446777777888888888888888888887765 34 35555555555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4.9e-18 Score=166.51 Aligned_cols=334 Identities=9% Similarity=0.005 Sum_probs=224.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
+...+..+...+...|++++|...|+.+....+.+..++..+...+...|++++|+..|+++.+.... +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 34566677777888888888888888888877777888888888888888888888888887775322 55677778888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 310 (603)
+...|++++|...|+++....+... .+...+..+...+. ...+..+...+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQ-EEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcCCccc-ChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 8888888888888887776543100 12233333311100 00112223444555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQL 390 (603)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (603)
++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..+ .+..++..+...+...|++++|+..+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665555555543 23455555666666666666666666666655543 24455666666666666666666666666
Q ss_pred HHcCCCCCHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----hhHHHHHHHHHccCCHHHHH
Q 007461 391 ISQGCIPGQVTY------------ASIINAYCRIALYSKAEKVFIEMQQKGFDKCV----VAYSSMVAMYGKTGRIRDAM 454 (603)
Q Consensus 391 ~~~g~~p~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 454 (603)
.+.. +.+...+ ..+...+.+.|++++|...++++.+.. +.+. ..+..+...+.+.|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5543 1222222 233667889999999999999998875 2233 33556888999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 007461 455 WLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD-KVSYTTVISAYNR 516 (603)
Q Consensus 455 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 516 (603)
..+++..+.. +.+..+|..+...+...|++++|...|+++.+. .|+ ...+..+..+...
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 9999998862 447889999999999999999999999999965 455 4556666665543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=5e-16 Score=159.07 Aligned_cols=364 Identities=12% Similarity=0.063 Sum_probs=248.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh----cCcHHHHHHH
Q 007461 137 VSLSEDFKIYNVLPDAHTCSRLVASCVR----ARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK----LHMYYSTILV 208 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 208 (603)
...++...+ ..+..++..+...|.. .++++.|...|++..+. .+..++..|...|.. .+++++|++.
T Consensus 27 ~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 27 LEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 344444443 3466777777777776 67888888888887765 356677777777777 7788888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc----cCCHHHHHH
Q 007461 209 YEKMKSAGIVLDSGCYCQIMEAYYK----IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK----SGRAFEALK 280 (603)
Q Consensus 209 ~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 280 (603)
|++..+.| +...+..|...|.. .+++++|.+.|++....+. ..++..|...|.. .+++++|++
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR------DSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88877764 55667777777777 6788888888887776542 3467777777766 677888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 007461 281 FFRDMKEKGILEDPSIYASLICSFAS----ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE----EGLVEKTLDVV 352 (603)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 352 (603)
.|++..+.| +...+..+...+.. .++.++|.+++++..+.+ ++..+..+...|.. .+++++|.++|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888777654 56666667666666 677888888887777754 56667777777775 67777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHH
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSK----RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI-----ALYSKAEKVFI 423 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~ 423 (603)
++..+.+. ...+..+...+.. .++.++|+..|++..+.| +...+..+...|... ++.++|...|+
T Consensus 247 ~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 77766542 3355556666666 677777777777776554 344555566666655 67777777777
Q ss_pred HHHHcCCCcCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 007461 424 EMQQKGFDKCVVAYSSMVAMYGKTG---RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEME 496 (603)
Q Consensus 424 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 496 (603)
+..+.+ +...+..+...|.+.| ++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 776654 3455666666666545 5667777777776653 55666666666666 677777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 007461 497 RRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 497 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~ 535 (603)
+.+ +...+..|...|.. .+++++|...|++..+.+.
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 654 45566666666666 6777777777777776653
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=7e-17 Score=167.18 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=79.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+-+...|..++. +.+.|++++|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|+++....| +...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 345666777776 356677777777777776653 45566677777777777777777777777766654 555666655
Q ss_pred hhh-hhcCcHHHHHH----HHHHHHh-CCCCC-ChhhHHHHHHHHHH---------cCCHHHHHHHHHHHHh
Q 007461 194 GGY-NKLHMYYSTIL----VYEKMKS-AGIVL-DSGCYCQIMEAYYK---------IGDSEKVAALFLECKS 249 (603)
Q Consensus 194 ~~~-~~~~~~~~a~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~ 249 (603)
... ...|++++|.+ +|++..+ .|..| +...|...+....+ .|+++.|..+|++...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 432 23455555544 5555443 24333 34455555555544 4566666666666555
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=2.1e-16 Score=163.62 Aligned_cols=127 Identities=9% Similarity=0.069 Sum_probs=79.3
Q ss_pred chhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 82 KFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
.|..++. +.+.++..+ |..+|+.+.+. ++.+...|...+..+.+.|++++|..+|+.+.+.. |+...|...+..
T Consensus 15 ~w~~l~~-~~~~~~~~~-a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDK-ARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp HHHHHHH-HHHSSCHHH-HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHH-HHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 3666665 344555444 77777777764 35566677777777777777777777777777654 566666666543
Q ss_pred H-HccCChHHHHH----HHHHHHhc---CCcchhhHHHHHhhhhh---------cCcHHHHHHHHHHHHh
Q 007461 162 C-VRARKFKIANT----LLQVFITD---GEIALLAFNSAMGGYNK---------LHMYYSTILVYEKMKS 214 (603)
Q Consensus 162 ~-~~~~~~~~a~~----~~~~~~~~---~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~ 214 (603)
. ...|+.+.|.+ +|+..... .+.+...|...+....+ .|++++|..+|++.++
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 2 33456555544 55555432 12355667666665544 5677777777777776
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=7.1e-16 Score=157.91 Aligned_cols=365 Identities=12% Similarity=0.056 Sum_probs=284.7
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQ----SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVR----ARKFKIA 171 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 171 (603)
+++.+....+. .++..+..+...|.. .+++++|..+|+...+.| +..++..|...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 56777766653 367788888888887 788899999998887764 56677778888887 7888999
Q ss_pred HHHHHHHHhcCCcchhhHHHHHhhhhh----cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCCHHHHHHH
Q 007461 172 NTLLQVFITDGEIALLAFNSAMGGYNK----LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK----IGDSEKVAAL 243 (603)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~ 243 (603)
..+|++....+ +..++..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.+.
T Consensus 99 ~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 99 VIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99888887754 56677778777877 778899999998888765 56677788888877 7889999999
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHH
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSLGK----SGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS----ITEVKLAEE 315 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~ 315 (603)
|++..+.+ +..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..
T Consensus 174 ~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 174 YSKAAEQG------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHCC------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 98887764 23578888888877 788999999998888764 55667777777765 778899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHH
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIE----EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKR-----RGYWAAVKV 386 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~ 386 (603)
+++...+.+ +...+..+..+|.. .++.++|.+.|++..+.+ +...+..+...|... +++++|+..
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 988888764 56777778888887 888899999998887764 344667777777776 888999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCCHHHHHHHHHH
Q 007461 387 YEQLISQGCIPGQVTYASIINAYCRIA---LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMWLVAK 459 (603)
Q Consensus 387 ~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 459 (603)
|++..+.| +...+..+...|...| +.++|.+.|++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 98888765 4456666777776655 7788888888888764 56778888888887 7888999999988
Q ss_pred HHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 007461 460 MKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKV 500 (603)
Q Consensus 460 m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 500 (603)
..+.| +...+..|...|.. .++.++|...|++..+.+.
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88764 56777778888877 7889999999998887653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=7.6e-18 Score=163.11 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=78.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI 234 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 234 (603)
+..+...+...|++++|..+++++....+.+..++..++..+...|++++|..+++++.+... .+...+..+...+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444444444444444444444444444443321 1333444444444444
Q ss_pred C-CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 007461 235 G-DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLA 313 (603)
Q Consensus 235 g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 313 (603)
| ++++|.+.|++....++.. ...|..+...+...|++++|++.|++..+... .+...+..+...+...|++++|
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHH
Confidence 4 4444444444444332211 12344444444444444444444444443311 1222333333334444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 314 EELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESM 355 (603)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 355 (603)
...++.+.+.. +.+..++..+...|...|++++|...+++.
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44444443332 113334444444444444444444444433
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=8.8e-18 Score=162.63 Aligned_cols=288 Identities=11% Similarity=-0.022 Sum_probs=218.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHH
Q 007461 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSA 192 (603)
Q Consensus 113 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 192 (603)
++.+...+..++..+...|++++|+.+++.+.+.. +.+...+..++..+...|++++|..+++++....+.+..+|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34566677888888888899999999999888775 45566677777888888999999999999888888888889999
Q ss_pred HhhhhhcC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc
Q 007461 193 MGGYNKLH-MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK 271 (603)
Q Consensus 193 ~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 271 (603)
...+...| ++++|.+.|++..+.... +...+..+...+...|++++|.+.|++.....+.. ...+..+...+..
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~ 171 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC----HLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----SHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHH
Confidence 99999998 899999999988876432 56778888889999999999999998887765442 2467778888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHcC
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG--------MLRDPEVCLKLVLMYIEEG 343 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 343 (603)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999988763 3356788888888889999999999998887642 1234567777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007461 344 LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 409 (603)
++++|.+.+++..+.++. +..++..+...+.+.|++++|...|++..+.. +.+...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 777777777777665542 44566666677777777777777777665543 22444555555544
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.4e-17 Score=163.93 Aligned_cols=307 Identities=9% Similarity=0.008 Sum_probs=172.1
Q ss_pred HcCCHHHHHH-HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 007461 233 KIGDSEKVAA-LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVK 311 (603)
Q Consensus 233 ~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 311 (603)
-.|++++|.. .|++...........+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777776 66654433222111123456677777777888888888887777653 235566777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 312 LAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLI 391 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 391 (603)
+|...++.+.+.. +.+..++..+...|...|++++|.+.++++....+... ..+..+... .. .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~-------~~-------~- 178 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPAEEG-------AG-------G- 178 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH-------hh-------h-
Confidence 7777777777664 33667777777777888888888888877776654321 111111000 00 0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHh
Q 007461 392 SQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK-CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVW 470 (603)
Q Consensus 392 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 470 (603)
..+. ..+. .+..+...|++++|...|+++.+..... +..++..+...|.+.|++++|...+++..+.. +.+..
T Consensus 179 ---~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 179 ---AGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---hccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0000 0011 1122225566666666666665543111 35566666666666666666666666665541 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI----------DRA 540 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~ 540 (603)
.|..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...++++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 66666666666666666666666665432 2234556666666666667777766666665432211 145
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 007461 541 IAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
.|..+..+|.+.|++++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 666677777777777776666553
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=8.2e-15 Score=157.14 Aligned_cols=383 Identities=9% Similarity=0.125 Sum_probs=275.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHH
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN--VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSA 192 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 192 (603)
-++.-....+++|...|.+.+|++++++....+ +..+....+.++....+. +..+..+......... ...+
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eI 1055 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDI 1055 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHH
Confidence 455556677788888999999999999887332 113455666677666666 4555655555544221 3346
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS 272 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 272 (603)
...+...|.+++|..+|++... .....+.++ -..|++++|.++.+++.. ..+|..+..++.+.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn~---------p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCNE---------PAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcCC---------HHHHHHHHHHHHhC
Confidence 7778889999999999988521 111222232 277889999998886522 25799999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007461 273 GRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVV 352 (603)
Q Consensus 273 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 352 (603)
|++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++.+.+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999653 367788889999999999999999998877764 34444456888999999888644442
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
+ .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 1 234556777889999999999999999885 36888999999999999999998876 3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVI 511 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li 511 (603)
+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+. +.|.. ..|+-+.
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELa 1321 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 1321 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHH
Confidence 4688888888898899988888876643 34666677888999999999999999988773 34333 4566666
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHccCCHHHHHH
Q 007461 512 SAYNRA--REFDMCVKFYNEFRMNGGV------IDRAIAGIMVGVFSKLSQIEELVK 560 (603)
Q Consensus 512 ~~~~~~--g~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 560 (603)
..|++. ++..++.++|..-.. +. -+...|.-++..|.+.|+++.|..
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 666654 344444444442211 11 134568888889999999998883
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.4e-17 Score=164.13 Aligned_cols=302 Identities=9% Similarity=-0.062 Sum_probs=166.8
Q ss_pred cCChHHHHH-HHHHHHhcCCc----chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 165 ARKFKIANT-LLQVFITDGEI----ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 165 ~~~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
.|+++.|.. .+++.....+. +...+..+...+.+.|++++|+..|+++.+... .+..++..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 66654443332 345566777777777777777777777776542 255667777777777777777
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKE 319 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 319 (603)
|...|+++...++. +..+|..+...+...|++++|++.|+++...... +...+..+... ..
T Consensus 117 A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 117 AISALRRCLELKPD----NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 77777777665432 2456777777777777777777777777665321 11111111000 00
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 320 AEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKI-SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
... ....+..+...+ ..|++++|...|+++.+.++.. +..++..+...+...|++++|+..|+++.... +.+
T Consensus 178 ----~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 ----GAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000 000011111222 5555666666666555544321 34455566666666666666666666655543 234
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----------CC
Q 007461 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE----------PN 468 (603)
Q Consensus 399 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~ 468 (603)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|++..+..-. ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 5566666666666666666666666666553 444566666666666667777777666666543100 01
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 469 VWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
..+|..+..+|...|+.++|..++++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 45666677777777777776666553
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=1.6e-14 Score=154.96 Aligned_cols=447 Identities=14% Similarity=0.102 Sum_probs=319.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhC---CCCCCCHHhHHHHHHHHHhcCCHH---HHH--------HHHHHHHhCCC--
Q 007461 85 SFLHGMLKDPQTQELAYDYYNEAKKL---PEFRPEKSTLKLLIRYLVQSKKWD---SIV--------SLSEDFKIYNV-- 148 (603)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~---~a~--------~~~~~~~~~~~-- 148 (603)
.++..+|...+.. +|.-.|++-.-. -.+.-....|....+.++++.+.+ .++ ++.+......+
T Consensus 903 ~~vgkyce~rDp~-la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e 981 (1630)
T 1xi4_A 903 RVVGKYCEKRDPH-LACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSE 981 (1630)
T ss_pred HHHHHHHHhcCcc-hHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhccc
Confidence 4456677665543 466666531000 001223345666666666665533 221 22222222211
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC---cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHH
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE---IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYC 225 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 225 (603)
.-++.--...+++|...|.+.+|+++++++.-.+. .+...-+.++.+..+. +..+..+..++.... ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 23444556678888899999999999999985544 3455566677766666 556666666655422 234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007461 226 QIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA 305 (603)
Q Consensus 226 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (603)
-+...+...|.+++|..+|++.... ..+.+.++. ..|++++|.++.++. -+..+|..+..++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~--------~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVN--------TSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCH--------HHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHH
Confidence 4778888999999999999986310 122333332 778899999998865 24678999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 385 (603)
..|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+....+....+. ..+.++.+|++.+++++...
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--ccHHHHHHHHhhcCHHHHHH
Confidence 999999999999664 4788889999999999999999999998777653322 34458999999999886444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 007461 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC 465 (603)
Q Consensus 386 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 465 (603)
+. . .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++..
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 32 2 456677888999999999999999999984 489999999999999999999998763
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007461 466 EPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIM 545 (603)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... .-....|+-+
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 6789999999999999999998876653 2355667799999999999999999998887654 2244566666
Q ss_pred HHHHHcc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCcHHHHHH
Q 007461 546 VGVFSKL--SQIEELVKLLQDMKSEGTKL------DERLYHSAMNALRDAGLQMQAQW 595 (603)
Q Consensus 546 ~~~~~~~--g~~~~A~~~~~~m~~~g~~~------~~~~~~~ll~a~~~~g~~~~a~~ 595 (603)
...|.+. ++..++.++|..-. .+++ +...|..++-.|.+.|+++.|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666653 45566666655332 2322 46779999999999999999884
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=6.2e-17 Score=155.82 Aligned_cols=330 Identities=11% Similarity=0.110 Sum_probs=118.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
.+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..++...+. .+++.+.+.++.+|.
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CccchhHHHHHHHHH
Confidence 4666666666666666666666643 245555666666666666666666655544442 333455555666666
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+. .|..++.++.+.|++++
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------------n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT------------CHHHHHHHHHTTTCHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------------hHHHHHHHHHHhccHHH
Confidence 6666665555553 2444456666666666666666666665441 25666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
|++.++++ .+..+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++|..+++....
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 66666555 1455566666666666666655332221 222333333445555555555555555555444
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----
Q 007461 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK----- 432 (603)
Q Consensus 358 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----- 432 (603)
.+ +-....|+-+.-.|++- +.+++.+.++.|.. +.+++|
T Consensus 236 le-~ah~~~ftel~il~~ky---------------------------------~p~k~~ehl~~~~~--~ini~k~~~~~ 279 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKF---------------------------------KPQKMREHLELFWS--RVNIPKVLRAA 279 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHST--TSCHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHhc---------------------------------CHHHHHHHHHHHHH--HhcCcHHHHHH
Confidence 33 22333333333333321 12222223332221 112222
Q ss_pred -CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 433 -CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVI 511 (603)
Q Consensus 433 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 511 (603)
+...|..++..|.+.++++.|..+ |.++ +|+..--..+.....+..+.+--.+...-.++. .| ..++-|+
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll 350 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLL 350 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHH
Confidence 356788888888888888888763 4443 344444444455555555555544444444422 22 3355566
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 007461 512 SAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 512 ~~~~~~g~~~~a~~~~~~ 529 (603)
.++...=|..++..+|++
T Consensus 351 ~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 351 MVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHGGGCCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHH
Confidence 666555555555555543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=9.6e-17 Score=154.53 Aligned_cols=236 Identities=11% Similarity=0.127 Sum_probs=113.3
Q ss_pred CChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157 (603)
Q Consensus 78 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (603)
+++..|..+..++.+.++..+ |.+.|.+ .+|...|..++..+...|++++|+.+++..++. .+++.+.+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~e-AIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~ 99 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKE-AIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETE 99 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHH-HHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHH
Confidence 444579999999999999988 9999964 257779999999999999999999988877764 566888999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++
T Consensus 100 Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp ---------CHHHHTTTTT------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence 9999999999999988774 356679999999999999999999999976 3799999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 238 EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELF 317 (603)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 317 (603)
++|.+.++++. ++.+|..++.+|...|+++.|......+. +.| .-...++..|.+.|.++++..++
T Consensus 165 q~AVea~~KA~---------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 165 QAAVDGARKAN---------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHHHHHHHHHT---------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcC---------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999881 24789999999999999999977655432 234 44557889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 007461 318 KEAEEKGMLRDPEVCLKLVLMYIEE--GLVEKTLDVVE 353 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 353 (603)
+...... +-....|+-|.-.|++- +++.+.++.|.
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998765 55678888887777764 34445555444
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.8e-17 Score=160.77 Aligned_cols=233 Identities=11% Similarity=0.028 Sum_probs=121.7
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+...|..+...+.+.|++++|+..|+++.+... .+..++..+...|.+.|++++|...|+++...++. +..+|..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN----NLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHH
Confidence 445566777777777777777777777766532 25666777777777777777777777776665432 2456777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 007461 265 LCDSLGKSGRAFEALKFFRDMKEKGILEDP-----------SIYASLICSFASITEVKLAEELFKEAEEKGML-RDPEVC 332 (603)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 332 (603)
+...|...|++++|++.|+++.+. .|+. ..+..+...+...|++++|...++++.+.... .+..++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 777777777777777777777653 2221 11222344444555555555555555544321 134445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 412 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 412 (603)
..+...|.+.|++++|.+.|++..+..+ .+..+|..+...+...|++++|+..|++..+.. +.+..++..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 5555555555555555555555444333 133344444444444444444444444444332 12233444444444444
Q ss_pred CChHHHHHHHHHHH
Q 007461 413 ALYSKAEKVFIEMQ 426 (603)
Q Consensus 413 g~~~~a~~~~~~~~ 426 (603)
|++++|...|+++.
T Consensus 295 g~~~~A~~~~~~al 308 (365)
T 4eqf_A 295 GAYREAVSNFLTAL 308 (365)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=8.2e-17 Score=158.34 Aligned_cols=263 Identities=9% Similarity=-0.057 Sum_probs=164.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 411 (603)
+..+...+.+.|++++|.+.|+++.+.++ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 44444445555555555555555544433 234445555555555555555555555555432 2334555555555666
Q ss_pred cCChHHHHHHHHHHHHcCCCc----------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDK----------CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE-PNVWIYNSLMDMHG 480 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~ 480 (603)
.|++++|...|+++.+.. +. ....+..+...+.+.|++++|...++++.+..-. ++..+|..+...|.
T Consensus 146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666555432 11 1223344577777888888888888888775211 15777888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007461 481 RAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVK 560 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 560 (603)
..|++++|...++++.+.. +.+..+|..+..+|...|++++|+..++++.+.... +...+..+..+|.+.|++++|.+
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888887643 235677888888888888888888888888776432 46778888888888888888888
Q ss_pred HHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 561 LLQDMKSEGTK-----------LDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 561 ~~~~m~~~g~~-----------~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
.++++.+..-. .+..+|..+..++...|+.+.+..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88887764210 1356788888888889999888887764
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=7.9e-16 Score=148.61 Aligned_cols=276 Identities=10% Similarity=-0.028 Sum_probs=159.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007461 296 IYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375 (603)
Q Consensus 296 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 375 (603)
.+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|.+.++++.+.++ .+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence 344455555556666666666666555432 2445555555555555555555555555554433 23344444555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHH-HH-HHHccCCHHHH
Q 007461 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM-VA-MYGKTGRIRDA 453 (603)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A 453 (603)
..|++++|+..++++.+... .+...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 55555555555555444321 111111111000 0000000011 22 25566777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 454 MWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 454 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.+.++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777776652 3356677777777777777777777777776542 224566777777777888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 534 GGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKL-----------DERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 534 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-----------~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
... +...+..+..++.+.|++++|.+.++++.+..... +...|..+..++.+.|+.++|..++++
T Consensus 236 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 236 NPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 432 56677777778888888888888888777642111 356777777888888888888877764
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=4.5e-16 Score=150.33 Aligned_cols=96 Identities=6% Similarity=-0.162 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+..+...+...|++++|+.+++++.+.. +.+..++..+...+...|++++|...++++....+.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34445555555566666666665555543 33455555555555555566666655555555555555555555555555
Q ss_pred cCcHHHHHHHHHHHHhC
Q 007461 199 LHMYYSTILVYEKMKSA 215 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~ 215 (603)
.|++++|++.++++.+.
T Consensus 102 ~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS 118 (327)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555543
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=178.24 Aligned_cols=117 Identities=12% Similarity=0.243 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQQ---KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
.||+++|++|++.|++++|.++|++|.+ .|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||..|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4566666666666666666666655542 3556666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 477 DMHGRAKN-LRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516 (603)
Q Consensus 477 ~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 516 (603)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 66666665 35566666666666666666666666654443
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=9.6e-15 Score=148.98 Aligned_cols=390 Identities=12% Similarity=0.044 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhc---------CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC-----C-
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITD---------GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA-----G- 216 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~- 216 (603)
...|+.|...+...|++++|++.|++..+. .+....+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456677777777777777777777765432 1223455666666666666666666666655431 0
Q ss_pred CCC-ChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH---HhccCCHHHHHHHHHHHHHCCC
Q 007461 217 IVL-DSGCYCQIMEAYYKIG--DSEKVAALFLECKSRKLDSTPFSTHMYKILCDS---LGKSGRAFEALKFFRDMKEKGI 290 (603)
Q Consensus 217 ~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~ 290 (603)
..+ ...++..+..++...| ++++|.+.|++..+.++. +...+..+... +...++.++|++.|++..+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~----~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK----NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 011 2334444444444433 466666666666555432 12334433333 233455566666666655432
Q ss_pred CCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 007461 291 LEDPSIYASLICSFAS----ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI 366 (603)
Q Consensus 291 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 366 (603)
+.+...+..+...+.. .|+.++|.+.+++..+.. +.+..++..+...|...|++++|.+.+++..+..+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 1133344433333332 344555666666655543 234555566666666666666666666666555442 3334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
+..+...|...+.... ... ...........+..++|...++...+.. +.+...+..+...|.+
T Consensus 284 ~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 4444433322111000 000 0000000111233567888888877765 5566788888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVW--IYNSLMD-MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMC 523 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 523 (603)
.|++++|.+.|++..+....+... .+..+.. .....|+.++|+..|++.++. .|+..... +..+.+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHH
Confidence 999999999999988753322211 1222222 234678999999999998854 45543222 223445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 007461 524 VKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG-TKLDERLY 577 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~ 577 (603)
.++++...+.+.. +..+|..+..+|...|++++|++.|++.++.| ..|+...|
T Consensus 416 ~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 416 QKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 5566666655433 56788889999999999999999999988764 23444433
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.7e-15 Score=142.99 Aligned_cols=246 Identities=10% Similarity=0.049 Sum_probs=139.6
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
...|+++.|+..++..... .|+ ......+.++|...|+++.|...++. ..+++..++..+...+...|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCCc
Confidence 3456666666666554332 222 22444556677777777776654432 123345666667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007461 275 AFEALKFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 353 (603)
.++|++.++++...+..|+ ...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777766654453 33444455566666777777666665 3456666666666666666666666666
Q ss_pred HHHhCCCCCCHhhHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 354 SMKNAKLKISDCISCA----IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
.+.+.++ +. +... ++..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|...|++..+..
T Consensus 155 ~~~~~~p--~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQDE--DA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHCT--TC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhCc--Cc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6665542 21 1111 1222223355666666666665542 3455555556666666666666666666655553
Q ss_pred CCcCHhhHHHHHHHHHccCCHHH-HHHHHHHHHH
Q 007461 430 FDKCVVAYSSMVAMYGKTGRIRD-AMWLVAKMKA 462 (603)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 462 (603)
+.+..++..++..+...|+.++ +.++++++.+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455555566666666666544 3455555554
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=176.52 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=116.6
Q ss_pred CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA---KGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY 507 (603)
Q Consensus 431 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 507 (603)
..-..+|++||++|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44467899999999999999999999988764 488999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 007461 508 TTVISAYNRARE-FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLD 573 (603)
Q Consensus 508 ~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 573 (603)
|++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....+. ..++.++++ ..++.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 999999999987 478899999999999999999999888655443 445555555 3355554
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.7e-15 Score=142.94 Aligned_cols=251 Identities=12% Similarity=0.027 Sum_probs=166.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDA--HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
+-....|++..|+..++...... |+. .....+.++|...|+++.|+..++. ..+++..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 44556778888888777654432 332 3455667778888888777765543 3455677777777888888888
Q ss_pred HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 007461 203 YSTILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 281 (603)
++|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+..++..++..+.+.|++++|.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888877765444 445556666778888888888888765 12345777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 282 FRDMKEKGILEDPSIY---ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 282 ~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
|+++.+. .|+.... ...+..+...|++++|..+++++.+.. +.++.+++.+..++.+.|++++|.+.|++..+.
T Consensus 153 l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888765 3443211 122233344567777777777777663 346677777777777777777777777776666
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 007461 359 KLKISDCISCAIVNGFSKRRGYWA-AVKVYEQLISQ 393 (603)
Q Consensus 359 ~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~ 393 (603)
++ -+..++..++..+...|+.++ +.++++++.+.
T Consensus 230 ~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 54 255566666666666666654 45666666654
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.7e-15 Score=149.69 Aligned_cols=386 Identities=10% Similarity=-0.070 Sum_probs=244.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC--
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIY--------NVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE-- 183 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 183 (603)
......||.|...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++.....+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567999999999999999999999987643 1133467888999999999999999999988765321
Q ss_pred ------cchhhHHHHHhhhhhc--CcHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHHcCCHHHHHHHHHHHHhCCC
Q 007461 184 ------IALLAFNSAMGGYNKL--HMYYSTILVYEKMKSAGIVLDSGCYCQIMEA---YYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 184 ------~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
....++..+..++... +++++|++.|++..+.... ++..+..+..+ +...++.++|.+.+++....++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 2345666666555554 5799999999998886432 45555555544 3456777888888888776654
Q ss_pred CCCCccHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 007461 253 DSTPFSTHMYKILCDSLG----KSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD 328 (603)
Q Consensus 253 ~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 328 (603)
. +..++..+...+. ..|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+... .+
T Consensus 207 ~----~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~ 280 (472)
T 4g1t_A 207 D----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NN 280 (472)
T ss_dssp S----CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TC
T ss_pred c----chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-Ch
Confidence 3 2345655554444 3567889999999887763 33667888899999999999999999999988753 36
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINA 408 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 408 (603)
..++..+...|...+....+ .. ...........+..+.|+..+++..+.. +.+..++..+...
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence 67777777666432211111 00 0011111122234567788888777654 3344567777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHh--hHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 007461 409 YCRIALYSKAEKVFIEMQQKGFDKCVV--AYSSMVA-MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485 (603)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 485 (603)
+...|++++|...|++..+....+... .+..+.. .+.+.|+.++|+..|++..+. .|+...... ..
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~ 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MK 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HH
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HH
Confidence 888888888888888887764333211 2222222 234678888898888888774 555433222 23
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007461 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 486 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 535 (603)
..+.++++..++.. +.+..+|..+..+|...|++++|++.|++.++.+.
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455666665443 33567888888899999999999999998887654
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=5.9e-14 Score=141.41 Aligned_cols=346 Identities=9% Similarity=-0.008 Sum_probs=155.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY---YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI 234 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 234 (603)
+...+.+.|++++|.++|++..+.+ +..++..|...|...|+. ++|+..|++..+. ++..+..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 4455566677777777777766543 444555566666666666 6777777766643 344555555544444
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007461 235 G-----DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE---ALKFFRDMKEKGILEDPSIYASLICSFAS 306 (603)
Q Consensus 235 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (603)
| +.++|...|++....+... ++..|...|...+..++ +.+.+......| +......+...+..
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~------A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGN------TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSS------CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHH------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 4 5667777777666654332 45566666655544332 333333333333 23344444444544
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CC
Q 007461 307 ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG---LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKR----RG 379 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~ 379 (603)
.+.++.+........+.-...++..+..|..+|.+.| +.++|.+.|+...+.+. ++...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 4433322222222221111122225555555555566 55566666666555554 2333333444444332 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC-----CHH
Q 007461 380 YWAAVKVYEQLISQGCIPGQVTYASIINA-Y--CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG-----RIR 451 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~ 451 (603)
+++|+..|++.. .| +...+..+... + ...++.++|...|++..+.| +...+..|...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 556666655554 22 22333333333 2 33555556666665555544 3444445554444 23 555
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 007461 452 DAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMC 523 (603)
Q Consensus 452 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 523 (603)
+|.+.|++.. . -+...+..|...|.. ..+.++|...|++..+.|. ......|...|.. ..++++|
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 5555555544 2 234444444444443 2255555555555554432 2233344444432 2355555
Q ss_pred HHHHHHHHHCC
Q 007461 524 VKFYNEFRMNG 534 (603)
Q Consensus 524 ~~~~~~~~~~~ 534 (603)
..+|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 55555555544
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=7e-14 Score=140.86 Aligned_cols=346 Identities=8% Similarity=-0.056 Sum_probs=200.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF---KIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
+...+.+.|++++|.++|+...+.| +..++..|...|...|+. ++|..+|++..+. ++.++..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 5566677788888888888777665 233344455555566666 7777777777654 556666666644443
Q ss_pred C-----cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc
Q 007461 200 H-----MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK---VAALFLECKSRKLDSTPFSTHMYKILCDSLGK 271 (603)
Q Consensus 200 ~-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 271 (603)
+ ++++|+..|++..+.|.. ..+..|...|...+..+. +.+.+......+.. ..+..|...|..
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~------~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP------EAGLAQVLLYRT 153 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT------THHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH------HHHHHHHHHHHc
Confidence 3 677788888877776532 366677777776665443 33344443333332 356777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CC
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASIT---EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE----GL 344 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 344 (603)
.+.++++.+....+.+.-...+...+..+...+...| +.++|.+.++...+.|. ++...+..|..+|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 7755555554333332222223336667777777777 77778888887777763 3555556666666544 67
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----ChH
Q 007461 345 VEKTLDVVESMKNAKLKISDCISCAIVNG-F--SKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA-----LYS 416 (603)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~ 416 (603)
+++|.+.|++.. . -+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 788888887776 2 233455555555 3 45777888888888877765 4555666666655 44 778
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHH
Q 007461 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQV 488 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 488 (603)
+|...|++.. .| +...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 8888877766 33 45666666666665 337788888888777665 33344555555543 4577777
Q ss_pred HHHHHHHHhCC
Q 007461 489 EKLWKEMERRK 499 (603)
Q Consensus 489 ~~~~~~m~~~~ 499 (603)
...|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 77777777665
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.4e-13 Score=127.57 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007461 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSK 551 (603)
Q Consensus 472 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.... +...|..+..++.+
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 112333444444444444444444444444443211 23344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 007461 552 LSQIEELVKLLQDMK 566 (603)
Q Consensus 552 ~g~~~~A~~~~~~m~ 566 (603)
.|++++|.+.+++..
T Consensus 220 ~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 220 VKEYASALETLDAAR 234 (258)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444444
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.4e-13 Score=127.61 Aligned_cols=223 Identities=12% Similarity=0.027 Sum_probs=103.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML--RD----PEVCLK 334 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 334 (603)
.|..+...+...|++++|++.|++..+.. .+...+..+...+...|++++|...++.+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555555555555555555555555443 44445555555555555555555555554443210 11 344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007461 335 LVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL 414 (603)
Q Consensus 335 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 414 (603)
+...|.+.|++++|.+.|++..+.... ...+... |+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~-----------------------------------~~ 120 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKL-----------------------------------RN 120 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHH-----------------------------------HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHH-----------------------------------hH
Confidence 444555555555555555544443221 1122333 33
Q ss_pred hHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 415 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
+++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+...|...|++++|...+++
T Consensus 121 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444444444444332 2233344444444444555555555555444431 22344444455555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 495 MERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 495 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
..+.. +.+...+..+..++...|++++|.+.++++.+
T Consensus 199 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 199 AIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44331 11234445555555555555555555555444
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=6.6e-14 Score=126.08 Aligned_cols=198 Identities=14% Similarity=0.059 Sum_probs=115.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+++...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+.+.|++++|+..+++..+..|.+..+|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3456667777777777777777777777777665 456677777777777777777777777777777777777777777
Q ss_pred hhhhhc-----------CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHH
Q 007461 194 GGYNKL-----------HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMY 262 (603)
Q Consensus 194 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 262 (603)
..+... |++++|+..|++..+.... +...+..+..++...|++++|+..|++..+.+ . +...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----~~~~~ 154 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-D----TPEIR 154 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C----CHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c----chHHH
Confidence 777776 6666666666666554322 44455555666666666666666666655544 1 13455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 263 KILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKE 319 (603)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 319 (603)
..+...|...|++++|+..|++..+.. +.+...+..+...+...|+.++|...+++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 556666666666666666666555432 11344445555555555555555555544
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=4.7e-14 Score=127.05 Aligned_cols=199 Identities=14% Similarity=0.083 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIM 228 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 228 (603)
+++...+..+...+.+.|++++|...|++..+..|.+..+|..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 4566677777778888888888888888888888888888888888888888888888888888775432 566777777
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 229 EAYYKI-----------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297 (603)
Q Consensus 229 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 297 (603)
..+.+. |++++|...|++..+.++. +...|..+...+...|++++|++.|++..+.. .+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR----YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 777777 7777777777766665433 23466666667777777777777777666654 455666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESM 355 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 355 (603)
..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.|++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666666653 224555666666666666666666665544
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=3.8e-11 Score=124.97 Aligned_cols=147 Identities=9% Similarity=0.011 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK---FKIANTLLQ 176 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~ 176 (603)
.+..|+.....+ +-|...|..++..+.+.+.++.+..+|+.+...- +.....|..-+..-.+.++ ++.+..+|+
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 444445444432 4577778888887777777778888888777663 5566677777777667677 777777777
Q ss_pred HHHhcCC--cchhhHHHHHhhhhhcCcH--------HHHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHHH---------c
Q 007461 177 VFITDGE--IALLAFNSAMGGYNKLHMY--------YSTILVYEKMKS-AGI-VLD-SGCYCQIMEAYYK---------I 234 (603)
Q Consensus 177 ~~~~~~~--~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~~---------~ 234 (603)
+.....+ +++..|...+....+.++. +...++|+..+. .|. .++ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 7777653 6666777766655554432 223356665443 344 443 3455555555442 2
Q ss_pred CCHHHHHHHHHHHHh
Q 007461 235 GDSEKVAALFLECKS 249 (603)
Q Consensus 235 g~~~~a~~~~~~~~~ 249 (603)
++++.+..+|+....
T Consensus 208 ~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 345566666666553
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=2.8e-13 Score=132.09 Aligned_cols=247 Identities=9% Similarity=0.023 Sum_probs=190.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK-FKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
...|+.+...+.+.|++++|+..++.+.+.+ +.+..+|..+..++...|+ +++|+..|+++....+.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888888999999999999988876 5667888888888888886 9999999999999888899999999999
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc-cCC
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK-SGR 274 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 274 (603)
+...|++++|+..|+++++.+.. +...|..+..++.+.|++++|+..|+++...++. +..+|+.+..++.. .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~----~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR----NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCc
Confidence 99999999999999998886543 7778888888999999999999999988887654 35688888888888 566
Q ss_pred HHHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---
Q 007461 275 AFEA-----LKFFRDMKEKGILE-DPSIYASLICSFASIT--EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG--- 343 (603)
Q Consensus 275 ~~~A-----~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 343 (603)
.++| ++.|++.+.. .| +...|..+...+...| +.++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 5777 4778777765 34 5567777777777777 577888877776 32 2446677778888887764
Q ss_pred ------CHHHHHHHHHHH-HhCCCCCCHhhHHHHHHHH
Q 007461 344 ------LVEKTLDVVESM-KNAKLKISDCISCAIVNGF 374 (603)
Q Consensus 344 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 374 (603)
.+++|.++|+++ .+.++ .....|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 247788888887 55554 2333455444443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=6.9e-12 Score=117.45 Aligned_cols=224 Identities=12% Similarity=0.038 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007461 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK----RRGYWAAVKVYEQLISQGCIPGQVTYA 403 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 403 (603)
++..+..+...|...|++++|.+.|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34445555555555556666665555555522 23345555555555 666666666666655543 445555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 007461 404 SIINAYCR----IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIYNSL 475 (603)
Q Consensus 404 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 475 (603)
.+...|.. .+++++|...|++..+.+ +...+..+...|.+ .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555655 666666666666666553 45556666666666 666666666666666543 44555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007461 476 MDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547 (603)
Q Consensus 476 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 566655 666666666666666543 34555666666666 667777777776666653 2445555666
Q ss_pred HHHc----cCCHHHHHHHHHHHHhCC
Q 007461 548 VFSK----LSQIEELVKLLQDMKSEG 569 (603)
Q Consensus 548 ~~~~----~g~~~~A~~~~~~m~~~g 569 (603)
.|.+ .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666777777776666554
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=2.3e-13 Score=127.64 Aligned_cols=245 Identities=9% Similarity=-0.026 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007461 343 GLVEKTLDVVESMKNAKLK---ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAE 419 (603)
Q Consensus 343 g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 419 (603)
|++++|.+.|+++.+.... .+..++..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 3444444444444443210 122334445555555555555555555555443 223455555555555666666666
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
..|++..+.. +.+...+..+...|.+.|++++|...++++.+. .|+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666555543 334555666666666666666666666666553 3333333333344445566666666665554431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 007461 500 VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI---DRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERL 576 (603)
Q Consensus 500 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 576 (603)
+++...+ .++..+...++.++|...++++.+..... +...+..+...|.+.|++++|...++++.+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 2222222 24445555556666666666554432110 1345566666666667777777777666643 2322
Q ss_pred HHHHHHHHHhcCcHHHHHHHH
Q 007461 577 YHSAMNALRDAGLQMQAQWLQ 597 (603)
Q Consensus 577 ~~~ll~a~~~~g~~~~a~~~~ 597 (603)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222234555566666665543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2e-12 Score=119.47 Aligned_cols=198 Identities=10% Similarity=0.067 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 4444444444555555555555544432 2234455555555555566666666655555543 3345555566666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVK 525 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 525 (603)
.|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665522223 34455555666666666666666666665432 1234556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 526 FYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.++++.+... .+...+..+...+.+.|++++|.+.++++.+.
T Consensus 197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666665432 24455566666666666666666666666654
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=1.2e-12 Score=122.46 Aligned_cols=230 Identities=12% Similarity=0.010 Sum_probs=114.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcC
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIG 235 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g 235 (603)
....+...|++++|+..|+++.+..+.+..++..+...|...|++++|+..+++..+.+..++ ...|..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 344455555555555555555555555555555555555555555556555555555221111 112555555566666
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007461 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 315 (603)
++++|.+.|++....++.. ..+|..+...|...|++++|++.|++..+.. +.+...+..+...+...+++++|.+
T Consensus 89 ~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555543321 2355566666666666666666665555441 1133344444412233345666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHhcCCHHHHHH
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGL---VEKTLDVVESMKNAK-LKIS------DCISCAIVNGFSKRRGYWAAVK 385 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~a~~ 385 (603)
.++.+.+... .+...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|+.
T Consensus 164 ~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6665555431 234445555555555555 555555555443321 0011 1234444445555555555555
Q ss_pred HHHHHHHc
Q 007461 386 VYEQLISQ 393 (603)
Q Consensus 386 ~~~~m~~~ 393 (603)
.|++..+.
T Consensus 243 ~~~~al~~ 250 (272)
T 3u4t_A 243 AWKNILAL 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55554443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=1.5e-12 Score=121.89 Aligned_cols=245 Identities=9% Similarity=0.023 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 007461 331 VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG--QVTYASIINA 408 (603)
Q Consensus 331 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~ 408 (603)
.+......+...|++++|...|++..+.++. +...+..+...+...|++++|+..+++..+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566777778888888888877776553 444677777788888888888888888776331121 2347778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 007461 409 YCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQV 488 (603)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 488 (603)
+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..+. .+.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888764 456678888888888889999999888888775 233566666666344445588999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCC-CCC------HHHHHHHHHHHHccCCHHHH
Q 007461 489 EKLWKEMERRKVTPDKVSYTTVISAYNRARE---FDMCVKFYNEFRMNGG-VID------RAIAGIMVGVFSKLSQIEEL 558 (603)
Q Consensus 489 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~A 558 (603)
.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+... .|+ ...|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99998887643 2235667777777877777 7788888888765421 122 14677788888889999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHH
Q 007461 559 VKLLQDMKSEGTKLD-ERLYHSAM 581 (603)
Q Consensus 559 ~~~~~~m~~~g~~~~-~~~~~~ll 581 (603)
.+.++++.+. .|+ ...+..+.
T Consensus 241 ~~~~~~al~~--~p~~~~a~~~l~ 262 (272)
T 3u4t_A 241 DAAWKNILAL--DPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHC
T ss_pred HHHHHHHHhc--CccHHHHHHHhh
Confidence 9999988875 344 44444433
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.3e-13 Score=127.58 Aligned_cols=216 Identities=6% Similarity=-0.159 Sum_probs=145.2
Q ss_pred HHHHHHHHHhhCCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 007461 99 LAYDYYNEAKKLPEFR--PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQ 176 (603)
Q Consensus 99 ~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 176 (603)
.|+..|+.+.+..... .+...+..+...+...|++++|+..++++.+.+ +.+..++..+...+...|++++|...++
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4888888887652211 245667888888888888888888888888775 5567888888888888888888888888
Q ss_pred HHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 007461 177 VFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP 256 (603)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 256 (603)
++....+.+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++..........
T Consensus 102 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 178 (275)
T 1xnf_A 102 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ- 178 (275)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS-
T ss_pred HHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch-
Confidence 888877777888888888888888888888888888774 34444444455555667888888888876665543321
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 257 FSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE---DPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
..+ .++..+...++.++|++.+++........ +...+..+...+...|++++|...++.+.+
T Consensus 179 ---~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 179 ---WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp ---THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223 36666677777777777777765431110 023334444444444444444444444443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.3e-12 Score=115.52 Aligned_cols=200 Identities=9% Similarity=0.057 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (603)
.+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34455555555555555555555555432 2334555556666666666666666666665553 344556666666666
Q ss_pred cc-CCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007461 446 KT-GRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMC 523 (603)
Q Consensus 446 ~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 523 (603)
.. |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 66 77777777776666522222 24556666666677777777777777666532 22355666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 524 VKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.+.++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777666543135555666666666777777777777766543
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=2.7e-12 Score=118.61 Aligned_cols=198 Identities=9% Similarity=-0.022 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++++....+.+..++..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444455555555555555555554443 33444555555555555555555555555554444444455555555555
Q ss_pred cCcHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
.|++++|++.++++.+.+..| +...+..+...+...|++++|.+.|++.....+. +..++..+...+...|++++
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN----QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHH
Confidence 555555555555554421122 2334444444555555555555555544443321 12344444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
|.+.++++.+.. ..+...+..+...+...|+.++|.+.++.+.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555444331 12333344444444444444444444444444
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=2.2e-11 Score=114.01 Aligned_cols=218 Identities=12% Similarity=0.066 Sum_probs=122.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007461 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE----EGLVEKTLDVVESMKNAKLKISDCISCAIVNGF 374 (603)
Q Consensus 299 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 374 (603)
.+...+...|++++|.+.+++..+. .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3333333444444444444444331 133334444444444 444555555444444443 333444455555
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 375 SK----RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR----IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 375 ~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 55 555555555555555543 44555555555555 666666666666666554 34455556666665
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 007461 447 ----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR-- 516 (603)
Q Consensus 447 ----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 516 (603)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGE 232 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 667777777777766643 45556666666666 777777777777776653 24556666667776
Q ss_pred --cCCHHHHHHHHHHHHHCC
Q 007461 517 --AREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 517 --~g~~~~a~~~~~~~~~~~ 534 (603)
.+++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 777777777777776654
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=6.6e-10 Score=115.69 Aligned_cols=425 Identities=10% Similarity=0.031 Sum_probs=257.3
Q ss_pred hchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHHHH
Q 007461 81 KKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKK---WDSIVSLSEDFKIYN-VLPDAHTCS 156 (603)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~ 156 (603)
..|..++..+.+.+.... +..+|+.+... ++.+...|..-+..-.+.++ .+.+..+|+...... .+|+...|.
T Consensus 67 ~~W~~yi~~~~~~~~~~~-aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 67 FLYVKLLKHHVSLKQWKQ-VYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp HHHHHHHHHHHHTTCHHH-HHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred HHHHHHHHHHHhcCcHHH-HHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 448888888777766654 99999999875 46778889998888888888 999999999988664 248888888
Q ss_pred HHHHHHHccCCh--------HHHHHHHHHHHhc----CCcchhhHHHHHhhhhh---------cCcHHHHHHHHHHHHhC
Q 007461 157 RLVASCVRARKF--------KIANTLLQVFITD----GEIALLAFNSAMGGYNK---------LHMYYSTILVYEKMKSA 215 (603)
Q Consensus 157 ~ll~~~~~~~~~--------~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~ 215 (603)
.-+....+.++. +...++|+..... .+.....|...+..... .++++.+..+|++.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 877766655543 3345777776542 23355688888766442 34567788889888853
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH--CCCC--
Q 007461 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE--KGIL-- 291 (603)
Q Consensus 216 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~-- 291 (603)
....-..+|......--..+. ..+.+++.+. ...++.|...+.++.. .++.
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~------------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL------------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH------------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 211111222222211111110 0111111110 1123333333333221 0110
Q ss_pred -------------C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007461 292 -------------E-----D---PSIYASLICSFASIT-------EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG 343 (603)
Q Consensus 292 -------------p-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 343 (603)
| + ...|...+.---..+ ..+.+..+|++++... +.+..+|...+..+.+.|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Confidence 1 0 122333333222221 1234556677776653 347777877777777888
Q ss_pred CHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HHH
Q 007461 344 LVEKTL-DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC---------IPG------------QVT 401 (603)
Q Consensus 344 ~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~ 401 (603)
+.++|. ++|+......+ .+...|-..+....+.|++++|..+|+++..... .|+ ...
T Consensus 358 ~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 888886 88888776443 3555566677777778888888888887765310 131 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT-GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 480 (603)
|...+....+.|..+.|..+|....+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|...++...
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 6666666677788888888888887651122233443333333344 4478888888888776 4446666677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 481 RAKNLRQVEKLWKEMERRKVTP--DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
..|+.+.|..+|++.+.....+ ....|...+..-...|+.+.+..+.+++.+..+.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7888888888888887653222 2245777777777788888888888888776433
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=3.5e-12 Score=115.35 Aligned_cols=97 Identities=6% Similarity=-0.125 Sum_probs=44.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|+..++.+.+.. +.+...+..+...+...|++++|...++++....+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3344444444555555555555555444433 233444444444444444444444444444444443444444444444
Q ss_pred hhc-CcHHHHHHHHHHHHh
Q 007461 197 NKL-HMYYSTILVYEKMKS 214 (603)
Q Consensus 197 ~~~-~~~~~a~~~~~~m~~ 214 (603)
... |++++|...++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHc
Confidence 444 444444444444443
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=1.4e-12 Score=127.18 Aligned_cols=230 Identities=9% Similarity=-0.008 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc-HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM-YYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
..+|..+...+...|++++|+..++++....+.+..+|+.+...+...|+ +++|+..|++.++.... +...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 46677788888899999999999999999999999999999999999997 99999999999987544 77889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCC
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS-ITE 309 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~ 309 (603)
+...|++++|+..|+++...++. +..+|..+..++.+.|++++|++.|+++++... -+...|+.+..++.. .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~----~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK----NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999887654 357899999999999999999999999988632 266788888888887 555
Q ss_pred HHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----
Q 007461 310 VKLA-----EELFKEAEEKGMLRDPEVCLKLVLMYIEEG--LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRR---- 378 (603)
Q Consensus 310 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 378 (603)
.++| .+.++.+++.. +-+...|..+...+.+.| ++++|.+.+..+ +.++ .+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccc
Confidence 4666 47777777765 236777777777777777 577888777777 3333 34556667777776653
Q ss_pred -----CHHHHHHHHHHH
Q 007461 379 -----GYWAAVKVYEQL 390 (603)
Q Consensus 379 -----~~~~a~~~~~~m 390 (603)
..++|+++|+++
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 246777777776
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.2e-12 Score=120.04 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 331 VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410 (603)
Q Consensus 331 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 410 (603)
.+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 344444444555555555555555544333 133344444444444444444444444444332 123344444444444
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 007461 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 490 (603)
..|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444432 2333444444444444444444444444444331 2233344444444444444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 491 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
.++++.+.. +.+..++..+..+|...|++++|.+.++++.+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444443321 11233344444444444444444444444443
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1e-12 Score=120.66 Aligned_cols=211 Identities=9% Similarity=0.025 Sum_probs=163.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 007461 363 SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442 (603)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (603)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44567788888999999999999999998754 4567888889999999999999999999998875 557889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007461 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDM 522 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 522 (603)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998863 4577889999999999999999999999998653 3367788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 523 CVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHS 579 (603)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 579 (603)
|.+.++++.+.... +...+..+..+|.+.|++++|.+.++++.+.. +.+...+..
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 232 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHH
Confidence 99999999886433 67789999999999999999999999998763 223444443
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.1e-12 Score=131.11 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhc------CCcchhhH
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA----HTCSRLVASCVRARKFKIANTLLQVFITD------GEIALLAF 189 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~ 189 (603)
+..+...+...|++++|+..|+++.+.+ +.+. .++..+...+...|++++|...+++.... .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445555666666777777666666553 2222 35555666666666666666666665543 12345566
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhC----C-CCCChhhHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSA----G-IVLDSGCYCQIMEAYYKIGD-----------------SEKVAALFLEC 247 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~~ 247 (603)
..+...|...|++++|...+++..+. + ......++..+...|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66666666777777777666665442 1 01123355666666677777 66666666554
Q ss_pred HhCC--CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 248 KSRK--LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL-ED----PSIYASLICSFASITEVKLAEELFKEA 320 (603)
Q Consensus 248 ~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 320 (603)
.... ....+....++..+...|...|++++|++.+++..+.... ++ ...+..+...+...|++++|...++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3211 0000112345667777777777777777777766543100 01 124555556666666666666666655
Q ss_pred HHcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 321 EEKGML-R----DPEVCLKLVLMYIEEGLVEKTLDVVESM 355 (603)
Q Consensus 321 ~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 355 (603)
.+.... . ...++..+...|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543110 0 1234444555555555555555555544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=3.3e-12 Score=127.18 Aligned_cols=206 Identities=15% Similarity=0.050 Sum_probs=125.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhcC------Cc
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD----AHTCSRLVASCVRARKFKIANTLLQVFITDG------EI 184 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~ 184 (603)
.....+......+...|++++|+..++++.+.+ +.+ ..++..+...+...|++++|...+++..... +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445566677777888888888888888887764 233 3466777777888888888888877765431 12
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHHcCC--------------------HHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV-LD----SGCYCQIMEAYYKIGD--------------------SEK 239 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~--------------------~~~ 239 (603)
...++..+...|...|++++|+..+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3566777777888888888888877766543100 11 3356667777777777 777
Q ss_pred HHHHHHHHHhCC--CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHH
Q 007461 240 VAALFLECKSRK--LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI-LED----PSIYASLICSFASITEVKL 312 (603)
Q Consensus 240 a~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~ 312 (603)
|...+++..... ....+....++..+...+...|++++|++.+++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 777766543321 011111234566666677777777777777666643200 011 1244445555555555555
Q ss_pred HHHHHHHHH
Q 007461 313 AEELFKEAE 321 (603)
Q Consensus 313 a~~~~~~~~ 321 (603)
|...+++..
T Consensus 246 A~~~~~~al 254 (406)
T 3sf4_A 246 ASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=2.1e-12 Score=128.62 Aligned_cols=305 Identities=13% Similarity=0.004 Sum_probs=167.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CH
Q 007461 220 DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK----GILE-DP 294 (603)
Q Consensus 220 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 294 (603)
....+......+...|++++|...|++.....+.....-..+|..+...+...|++++|+..+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455556666666666666666666665533211111235566666666666666666666655322 1111 12
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007461 295 SIYASLICSFASITEVKLAEELFKEAEEKGM-LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNG 373 (603)
Q Consensus 295 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 373 (603)
.++..+...+...|++++|...++++.+... ..+ ......++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------KVGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------ccchHHHHHHHHHH
Confidence 2344444445555555555555554443210 001 00011234444455
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 374 FSKRRG--------------------YWAAVKVYEQLISQ----GCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 374 ~~~~~~--------------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
+...|+ +++|+..+++.... +..+ ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 55555555543321 1011 1235566666777777777777777776543
Q ss_pred C----C-CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 429 G----F-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC-EPN----VWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498 (603)
Q Consensus 429 ~----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 498 (603)
. . ......+..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 0 01123677777788888888888888877654200 011 456677777888888888888888776542
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCH
Q 007461 499 KV-TPD----KVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVI-DRAIAGIMVGVFSKLSQI 555 (603)
Q Consensus 499 ~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 555 (603)
.. .++ ..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11 011 345777777888888888888888876543 1111 123455666666666654
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=2.2e-12 Score=124.60 Aligned_cols=278 Identities=14% Similarity=0.036 Sum_probs=147.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhc------CCcchhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD----AHTCSRLVASCVRARKFKIANTLLQVFITD------GEIALLA 188 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ 188 (603)
.+......+...|++++|+.+++++.+.. +.+ ...+..+...+...|++++|...+++.... .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44455666777888888888888877764 223 356667777777788888887777765543 1123556
Q ss_pred HHHHHhhhhhcCcHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHHcCC--------------------HHHHHHH
Q 007461 189 FNSAMGGYNKLHMYYSTILVYEKMKSAGIV-LD----SGCYCQIMEAYYKIGD--------------------SEKVAAL 243 (603)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~ 243 (603)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 677777777777777777777765542110 11 2355666666667777 6666666
Q ss_pred HHHHHhCC--CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 007461 244 FLECKSRK--LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG----ILE-DPSIYASLICSFASITEVKLAEEL 316 (603)
Q Consensus 244 ~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 316 (603)
+++..... ....+....++..+...+...|++++|.+.+++..+.. ..+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 65543210 00001112345566666666666666666666554320 000 012344444444455555555555
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 007461 317 FKEAEEKGML-RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ-- 393 (603)
Q Consensus 317 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 393 (603)
+++..+.... .+. .....++..+...+...|++++|...+++....
T Consensus 246 ~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5444332100 010 000223444445555555555555555544331
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 394 --GCI-PGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 394 --g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
+.. ....++..+...+...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 100 01234555566666666666666666666543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=1.5e-12 Score=129.94 Aligned_cols=132 Identities=12% Similarity=-0.022 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC---C--cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CC---CCHh
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKGF---D--KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG--CE---PNVW 470 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~---p~~~ 470 (603)
++..+...+...|++++|...+++..+... . .....+..+...|...|++++|...+++..+.. .. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445555556666666666666665543210 0 012255556666666666666666666554320 00 0133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVT-PD----KVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555566666666555555322100 01 12344555555555555555555555544
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=1.9e-11 Score=106.70 Aligned_cols=167 Identities=14% Similarity=0.090 Sum_probs=135.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
++.+|..+...+.+.|++++|+..|++..+.+ +.+..++..+...+.+.|++++|...+.......+.+..++..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56778888888888888888888888888776 55778888888888888888888888888888888888888888888
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
+...++++.|...+.+..+.... +...+..+...|.+.|++++|++.|++..+.++. +..+|..+..+|.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG----FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch----hhhHHHHHHHHHHHCCCH
Confidence 88888888888888887775432 6677888888888888888888888888776543 346788888888888888
Q ss_pred HHHHHHHHHHHHC
Q 007461 276 FEALKFFRDMKEK 288 (603)
Q Consensus 276 ~~A~~~~~~m~~~ 288 (603)
++|++.|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=8.1e-11 Score=112.18 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHh-cCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHHcCCHHHHHHHHH
Q 007461 169 KIANTLLQVFIT-DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD-SG-CYCQIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 169 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~ 245 (603)
++|..+|++... ..+.+...|..++..+.+.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 445555555544 23444444555555555555555555555554442 221 21 44444444444455555555554
Q ss_pred HHHh
Q 007461 246 ECKS 249 (603)
Q Consensus 246 ~~~~ 249 (603)
+..+
T Consensus 159 ~a~~ 162 (308)
T 2ond_A 159 KARE 162 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4444
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=3.8e-12 Score=122.93 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=70.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HH
Q 007461 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAK----GCE-PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV-TPD----KV 505 (603)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~ 505 (603)
.+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4444455555555555555555544321 000 0122455555555666666666666555532110 011 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 506 SYTTVISAYNRAREFDMCVKFYNEFRMNGGV-ID----RAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 506 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
++..+...|...|++++|...++++.+.... .+ ...+..+...|.+.|++++|.+.+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4566666667777777777777666542111 11 235566777777777777777777777654
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=3.4e-10 Score=107.81 Aligned_cols=218 Identities=9% Similarity=0.006 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007461 276 FEALKFFRDMKEKGILEDPSIYASLICSFA-------SITEV-------KLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
++|+.+|++.+... +-+...|..+...+. +.|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665531 124445555544443 23543 5566666665552112244455555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHH
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY-CRIALYSKAEK 420 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 420 (603)
.|++++|.++|++..+..+.-...+|..+...+.+.|++++|..+|++..+.. +.+...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665554321111145555555555555555555555555432 11222222221111 11355555555
Q ss_pred HHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG-CEP--NVWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544432 2334445555555555555555555555554431 222 23344444444444555555555555544
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=2.3e-11 Score=120.15 Aligned_cols=164 Identities=8% Similarity=0.010 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHh
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQK----GF-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK----GC-EPNVW 470 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~ 470 (603)
++..+...|...|++++|...|++..+. +- .....++..+...|...|++++|.+.+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 4444555555555555555555554432 10 001234555556666666666666666555441 11 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKV---TPD-KVSYTTVISAYNRARE---FDMCVKFYNEFRMNGGVID-RAIA 542 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~ 542 (603)
++..+...|...|++++|...+++..+... .|. ...+..+...|...|+ +++|+.++++. +..++ ...+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 455555666666666666666655533210 111 1224455555666666 55555555544 22222 2345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 543 GIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+...|...|++++|.+.+++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666667777777777777666554
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2.8e-11 Score=122.58 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 398 GQVTYASIINAYCRIALY-SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 398 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
+...+..+...+...|++ ++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344444444555555555 55555555554443 333445555555555555555555555555543 34444555555
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--C
Q 007461 477 DMHGRA---------KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA--------REFDMCVKFYNEFRMNGGV--I 537 (603)
Q Consensus 477 ~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~--~ 537 (603)
..|... |++++|+..+++..+.. +-+...|..+..+|... |++++|++.|+++.+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 555555 55555555555554332 11234455555555544 5555555555555543220 1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 007461 538 DRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQ 597 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~ 597 (603)
+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|+.++|.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555432 123334444455555555555555433
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=4e-11 Score=118.34 Aligned_cols=197 Identities=8% Similarity=-0.026 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC--C----CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----H
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKG--F----DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC-EPN----V 469 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 469 (603)
++..+...+...|++++|...+.+..+.- . +....+++.+...|...|++++|.+.+++..+..- .++ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44555555556666666666665554320 0 11134566677777777777777777776654200 011 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HH
Q 007461 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERR----KV-TPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-ID---RA 540 (603)
Q Consensus 470 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~ 540 (603)
.++..+...|...|++++|...+++..+. +. +....++..+...|...|++++|...+++..+.... .+ ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35666777777777777777777776541 22 222345667777777777777777777766543110 11 12
Q ss_pred HHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 541 IAGIMVGVFSKLSQ---IEELVKLLQDMKSEGTKLD-ERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 541 ~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~-~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
.+..+...+...|+ +++|+.++++. +..|+ ...+..+...+...|++++|...+++.
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556666777777 56666666554 22222 335556666777777777777766653
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=9.1e-11 Score=102.38 Aligned_cols=167 Identities=12% Similarity=0.022 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 007461 398 GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477 (603)
Q Consensus 398 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 477 (603)
+...|..+...+...|++++|...|++..+.. +-+...+..+...|.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455666666666666666666666666554 4455566666666666666666666666665542 234455555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 007461 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEE 557 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
.+...++++.+...+.+..+.. +-+...+..+...|...|++++|++.|++..+.... +...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665432 223455666666666667777777777666665332 45566666666777777777
Q ss_pred HHHHHHHHHhC
Q 007461 558 LVKLLQDMKSE 568 (603)
Q Consensus 558 A~~~~~~m~~~ 568 (603)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777666653
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.9e-11 Score=123.90 Aligned_cols=210 Identities=10% Similarity=-0.049 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHH
Q 007461 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF-KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEK 211 (603)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (603)
+++++..++...... +.+...+..+...+...|++ ++|+..|++..+..+.+..+|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555544332 34556666666666666666 6666666666666666666666666666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc--------CC
Q 007461 212 MKSAGIVLDSGCYCQIMEAYYKI---------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS--------GR 274 (603)
Q Consensus 212 m~~~~~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~ 274 (603)
..+.. |+...+..+...|... |++++|.+.|++..+.++. +...|..+..+|... |+
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL----DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhhccccch
Confidence 66543 4455666666666666 6666666666666554432 234566666666555 55
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007461 275 AFEALKFFRDMKEKGIL--EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLD 350 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 350 (603)
+++|++.|++..+.... -+...|..+..++...|++++|.+.++++.+... .+...+..+...+...|++++|.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665553110 1444555555555555555555555555555431 234444455555555555555444
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.6e-12 Score=122.71 Aligned_cols=171 Identities=14% Similarity=0.049 Sum_probs=107.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc--------
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIY-------NVLPDAHTCSRLVASCVRARKFKIANTLLQVFITD-------- 181 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------- 181 (603)
..++..+...+...|++++|+.+++++.+. ..+....++..+...+...|++++|...+++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666777777777777666653 22233455666666666777777777766666543
Q ss_pred CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---
Q 007461 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA------GI-VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK--- 251 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--- 251 (603)
.+....++..+...|...|++++|...+++..+. +. .....++..+...+...|++++|.+.|++.....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1234566667777777777777777777766543 11 1133456667777777777777777777665430
Q ss_pred -CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 252 -LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 252 -~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
....+....++..+...|...|++++|.+.|+++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011222345677777788888888888888877764
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.1e-11 Score=118.25 Aligned_cols=172 Identities=15% Similarity=0.081 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhc--------CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC------C
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITD--------GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA------G 216 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 216 (603)
+..++..+...+...|++++|..+++++... .+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888889999999999999888773 3456778888888888899999988888887653 1
Q ss_pred -CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---
Q 007461 217 -IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK----LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK--- 288 (603)
Q Consensus 217 -~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 288 (603)
......++..+...|...|++++|...|++..... ....+....++..+...+...|++++|++.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12234567778888888888888888887776531 0111223456777788888888888888888777653
Q ss_pred ---CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 289 ---GILE-DPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 289 ---g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
+..| ...++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234566667777777777777777777665
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=5.2e-10 Score=110.05 Aligned_cols=165 Identities=6% Similarity=-0.055 Sum_probs=87.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC--CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CC-CHHHHH
Q 007461 227 IMEAYYKIGDSEKVAALFLECKSRKLD--STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK----GI-LE-DPSIYA 298 (603)
Q Consensus 227 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p-~~~~~~ 298 (603)
....+...|++++|...|++....... ..+....++..+...|...|++++|+..+++..+. +. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344455667777777777766543211 11122456667777777777777777777666532 10 11 133455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 007461 299 SLICSFASITEVKLAEELFKEAEEKG--ML---RDPEVCLKLVLMYIEEGLVEKTLDVVESMKN-----AKLKISDCISC 368 (603)
Q Consensus 299 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 368 (603)
.+...+...|++++|.+.+++..+.. .. ....++..+...|...|++++|.+.+++..+ ..+.. ..++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 56666666677777666666655421 00 0123444555555666666666665555544 22211 33444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
.+...+.+.|++++|...+++..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455555555555555554443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=4e-10 Score=110.92 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHhH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQK----GFD-KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK----GCEPNVWI 471 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~ 471 (603)
++..+...|...|++++|...|++..+. +.+ ....++..+...|...|++++|.+.+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444444555555555555555444331 100 11234555555555555555555555555440 11122444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCH-HHHH
Q 007461 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKV---TPD-KVSYTTVISAYNRARE---FDMCVKFYNEFRMNGGVIDR-AIAG 543 (603)
Q Consensus 472 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~-~~~~ 543 (603)
+..+...|.+.|++++|...+++..+... .|. ...+..+...|...++ +++|+..+++ .+..++. ..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 55555555666666666666655543211 111 1224444444445555 4455554444 2112221 2444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 007461 544 IMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 544 ~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
.+...|...|++++|.+.+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666666666666666665543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=8.7e-10 Score=108.30 Aligned_cols=166 Identities=10% Similarity=-0.125 Sum_probs=96.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHhcCC--c----chhhHHH
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAH----TCSRLVASCVRARKFKIANTLLQVFITDGE--I----ALLAFNS 191 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~ 191 (603)
.+...+...|++++|...+++........+.. ++..+...+...|++++|...+++.....+ . ...+++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566788888888888776654222222 345555666677778777777776654322 1 1233455
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-ccHHHHH
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKSA----GIV--L-DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP-FSTHMYK 263 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 263 (603)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.........+ ....+|.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 666667777777777777665542 111 1 1234455666667777777777777666543322111 1224556
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 007461 264 ILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
.+...+...|++++|...+++...
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666667777777776666643
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=1.3e-09 Score=106.95 Aligned_cols=270 Identities=9% Similarity=-0.068 Sum_probs=187.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HhhHHH
Q 007461 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPE----VCLKLVLMYIEEGLVEKTLDVVESMKNAKLK-IS----DCISCA 369 (603)
Q Consensus 299 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 369 (603)
.....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++....... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445567899999999999988765333332 4566777888899999999999887643211 11 122556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----cCHhhHH
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQ----GCI--P-GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFD----KCVVAYS 438 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~ 438 (603)
+...+...|++++|+..+++..+. +.. | ....+..+...+...|++++|...+++..+.... .....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888899999999999887653 221 2 2345566777888899999999999988764321 1235677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPN-VWIYN-----SLMDMHGRAKNLRQVEKLWKEMERRKVTPD---KVSYTT 509 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ 509 (603)
.+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 788888899999999999998865311111 11222 233447788999999999988865432211 224667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 510 VISAYNRAREFDMCVKFYNEFRMN----GGVIDR-AIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778888899999999999887643 211122 25566777888899999999999998865
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=3.6e-10 Score=98.40 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=116.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|+..++.+.+.. +.+..++..+...+...|++++|...++++....+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456666777777788888888887776554 446667777777777778888888888777777666777777777777
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
...|++++|.+.++++.+... .+...+..+...+...|++++|.+.+++.....+. +..++..+...+...|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN----EGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHcCCHH
Confidence 777777777777777766532 35566667777777777777777777776655432 2356777777777777777
Q ss_pred HHHHHHHHHHHC
Q 007461 277 EALKFFRDMKEK 288 (603)
Q Consensus 277 ~A~~~~~~m~~~ 288 (603)
+|.+.+++..+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777766543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=1.8e-10 Score=121.41 Aligned_cols=166 Identities=11% Similarity=0.000 Sum_probs=145.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
+...|+.|...+.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|+..|++..+..+.+..+|+.+...
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46679999999999999999999999998876 55688899999999999999999999999999888899999999999
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
|...|++++|++.|++.++.... +...|..+..+|.+.|++++|++.|++..+.++. +..+|..+...+...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~----~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD----FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHhhhhhHHHhcccH
Confidence 99999999999999998886433 6778999999999999999999999998877644 356899999999999999
Q ss_pred HHHHHHHHHHHH
Q 007461 276 FEALKFFRDMKE 287 (603)
Q Consensus 276 ~~A~~~~~~m~~ 287 (603)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888754
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=1.8e-09 Score=93.84 Aligned_cols=127 Identities=9% Similarity=0.034 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHH
Confidence 3333333333444444444444333332 223333444444444444444444444444332 12233344444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 123 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444443321 1123344444444444444444444444443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=2.2e-09 Score=97.20 Aligned_cols=209 Identities=14% Similarity=0.075 Sum_probs=151.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.++..+......+...|++++|+..|+...+...+++...+..+...+...|++++|+..+++.....+.+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888888888999999999999988887633777777778888888999999999999998888888888999999
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 007461 195 GYNKLHMYYSTILVYEKMKSAGIVLDS-------GCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~ 267 (603)
.|...|++++|+..+++..+.... +. ..|..+...+...|++++|.+.|++....++. ..+..+|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK--KWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH--HHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC--cccHHHHHHHHH
Confidence 999999999999999988875322 34 45777788888899999999999988766432 003457777777
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL 335 (603)
Q Consensus 268 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 335 (603)
.|...|+ ..++++...+ ..+...|..... ...+.+++|...+++..+... .+..+...+
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 7765443 3445554442 223344443332 234567888888888888652 244444443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=6e-10 Score=117.45 Aligned_cols=167 Identities=11% Similarity=0.048 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIM 228 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 228 (603)
+.+..+|+.|...+.+.|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|++.|++.++.... +...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999986433 678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 007461 229 EAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASI 307 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 307 (603)
.+|.+.|++++|++.|++..+.++. +..+|+.+...|.+.|++++|++.|++.++. .| +...+..+..++...
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 9999999999999999999887644 3578999999999999999999999999886 45 567889999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 007461 308 TEVKLAEELFKEAEE 322 (603)
Q Consensus 308 g~~~~a~~~~~~~~~ 322 (603)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999988888765
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=7e-09 Score=93.85 Aligned_cols=191 Identities=13% Similarity=0.020 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (603)
.+......+...|++++|+..|++..+....++...+..+..++...|++++|...|++..+.. +.+...|..+...|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 3444444444444445555544444443322344444445555555555555555555555443 223445555555555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 007461 446 KTGRIRDAMWLVAKMKAKGCEPNV-------WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD---KVSYTTVISAYN 515 (603)
Q Consensus 446 ~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~ 515 (603)
+.|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++.++. .|+ ...+..+..+|.
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 5555555555555555431 1122 23455555555666666666666666532 343 234444444443
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 516 RAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 516 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.. +..+++++...+.. +...|.... ....+.+++|+..+++..+.
T Consensus 165 ~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 165 NN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 32 22333443333211 233332222 22334566777777766654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=5.2e-10 Score=104.88 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=69.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIY------NV-LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (603)
..++..+...+...|++++|+..++++.+. +- +....++..+...+...|++++|...+++.....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 115 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------- 115 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------
Confidence 445666666666777777777776666543 11 1123445555555555566666655555544330
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCCccHHHHHHH
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR----KLDSTPFSTHMYKIL 265 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~l 265 (603)
++......+....++..+...|...|++++|...|++.... .....+....++..+
T Consensus 116 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 116 --------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred --------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 00000000112234444445555555555555555444332 001111123455555
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 007461 266 CDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~m~~ 287 (603)
...|...|++++|.+.|++..+
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666655543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=9.1e-10 Score=103.19 Aligned_cols=201 Identities=11% Similarity=0.138 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CC
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQ------GCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQK------G-FD 431 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~ 431 (603)
++..+...+...|++++|+..+++..+. +-.| ...++..+...+...|++++|...+++..+. . .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444555555555555555555544432 1111 2334555666666666666666666665543 1 12
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 007461 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK------GCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERR------ 498 (603)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 498 (603)
.....+..+...|...|++++|...+++..+. +-.| ...++..+...|...|++++|...+++..+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23556666677777777777777777766543 1112 2445666667777777777777777766542
Q ss_pred -CCCCCH-HHHHHHHHHHHhcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 499 -KVTPDK-VSYTTVISAYNRAREFDMCVK------FYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 499 -~~~p~~-~~~~~li~~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
...+.. ..+..+...+...+....+.. .++..... .......+..+...|...|++++|.+++++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 223333333333222222222 11111100 011223566777777888888888888877664
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=8.4e-09 Score=84.13 Aligned_cols=128 Identities=15% Similarity=0.131 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.|..+...+...|++++|+.+++.+.+.+ +.+...+..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34555566666666666666666665543 33455555555556666666666666666555555555555555555555
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
.|++++|.+.++++.+... .+..++..+...+.+.|++++|...|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5555555555555554321 133444445555555555555555555443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=5.4e-08 Score=89.88 Aligned_cols=60 Identities=8% Similarity=-0.091 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007461 368 CAIVNGFSKRRGYWAAVKVYEQLISQGC-IPGQVTYASIINAYCRIALYSKAEKVFIEMQQ 427 (603)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 427 (603)
..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444555555555444433321 01223344444444444445555544444444
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=1.3e-08 Score=94.16 Aligned_cols=171 Identities=11% Similarity=-0.002 Sum_probs=101.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC---cchhh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD---AHTCSRLVASCVRARKFKIANTLLQVFITDGE---IALLA 188 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 188 (603)
.+...+-.+...+.+.|++++|+..|+.+.+.. +.+ ..++..+..++.+.|++++|+..|+.+....| ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666777777777777777777777654 223 55666677777777777777777777777644 23456
Q ss_pred HHHHHhhhhh--------cCcHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHHcCCHHHHHHH
Q 007461 189 FNSAMGGYNK--------LHMYYSTILVYEKMKSAGIVLDSGCY-----------------CQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 189 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~ll~~~~~~g~~~~a~~~ 243 (603)
+..+..++.. .|++++|+..|+++++.... +.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 6666677766 77777777777777764321 22222 3344555555555555555
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHC
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSLGKS----------GRAFEALKFFRDMKEK 288 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 288 (603)
|+.+....+... .....+..+..+|... |++++|+..|+++.+.
T Consensus 171 ~~~~l~~~p~~~-~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFDAYPDTP-WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHCTTST-THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCc-hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 555554433211 1223444455555443 5555555555555543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=9.5e-08 Score=88.23 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM-LRDPEVCLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
|+..|+++...+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 22333333444444444444444444444433321 1133334444444444444444444444443
Q ss_pred h
Q 007461 357 N 357 (603)
Q Consensus 357 ~ 357 (603)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 3
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=1.3e-08 Score=95.94 Aligned_cols=203 Identities=8% Similarity=-0.025 Sum_probs=116.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---Cc--CHhhHHHH
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQ----GCIPG-QVTYASIINAYCRIALYSKAEKVFIEMQQKGF---DK--CVVAYSSM 440 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 440 (603)
...|...|++++|+..|++.... |-.++ ..+|+.+...|.+.|++++|...+++..+... .+ -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56677777777777777766542 21111 34667777777777777777777777665421 11 13456667
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHHcCCCC---C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HH
Q 007461 441 VAMYGKT-GRIRDAMWLVAKMKAKGCEP---N----VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK------VS 506 (603)
Q Consensus 441 i~~~~~~-g~~~~A~~~~~~m~~~~~~p---~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~ 506 (603)
...|... |++++|+..|++..+. .| + ..++..+...+...|++++|...|++..+....... ..
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 7777775 7777777777776653 11 1 245666677777777777777777777654322211 13
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH---HHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVI-DRA---IAGIMVGVFS--KLSQIEELVKLLQDMKSEGTKLDERLYHS 579 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~---~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 579 (603)
|..+..++...|++++|...+++..+..... +.. .+..++..+. ..+++++|++.|+++ +..|...-..
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~----~~l~~~~~~~ 276 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF----MRLDKWKITI 276 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS----SCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC----CccHHHHHHH
Confidence 5556666677777777777777766532221 111 2233444443 345566666666544 2345544333
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=8.4e-07 Score=89.67 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc-HHHHHHHHHH
Q 007461 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM-YYSTILVYEK 211 (603)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 211 (603)
.+.|..+|+.+...- |. ++++.+..+|++....- |+...|...+....+.+. .+....+|+.
T Consensus 11 i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKS-YNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 566666666655431 22 67777777777777643 466677777766666553 3445556665
Q ss_pred HHhC-CCCC-ChhhHHHHHHHHH----HcCCHHHHHHHHHHHHh
Q 007461 212 MKSA-GIVL-DSGCYCQIMEAYY----KIGDSEKVAALFLECKS 249 (603)
Q Consensus 212 m~~~-~~~p-~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~ 249 (603)
.+.. |..| +...|...+..+. ..|+++.+.++|++...
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5542 3222 4455555555443 23556667777776665
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1e-08 Score=108.64 Aligned_cols=165 Identities=9% Similarity=-0.121 Sum_probs=89.9
Q ss_pred HHHHHHHHh--------hCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 007461 100 AYDYYNEAK--------KLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171 (603)
Q Consensus 100 a~~~~~~~~--------~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 171 (603)
|++.|+.+. +.. +.+...+..+...+.+.|++++|+..++++.+.+ +.+...|..+..++...|++++|
T Consensus 410 A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A 486 (681)
T 2pzi_A 410 TLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSA 486 (681)
T ss_dssp HHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHH
Confidence 666666555 221 3344455555666666666666666666655543 34455555555566666666666
Q ss_pred HHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 172 NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
+..|++..+..+.+..+|..+..+|.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|.+.|++..+.+
T Consensus 487 ~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 487 TKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPTS 564 (681)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Confidence 666666666555556666666666666666666 6666665554322 44455556666666666666666665544333
Q ss_pred CCCCCccHHHHHHHHHHHhccC
Q 007461 252 LDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 252 ~~~~~~~~~~~~~li~~~~~~g 273 (603)
+. +..+|..+..++...+
T Consensus 565 P~----~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 565 RH----FTTARLTSAVTLLSGR 582 (681)
T ss_dssp TT----HHHHHHHHHHHTC---
T ss_pred cc----cHHHHHHHHHHHHccC
Confidence 22 2344555555554433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=2.9e-08 Score=91.85 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc---hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC-C-Chhh
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA---LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV-L-DSGC 223 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~ 223 (603)
+.+...+-.+...+.+.|++++|...|+.+....|.+ ..++..+..+|.+.|++++|+..|++..+.... | ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456667777778888999999999999998887765 778888889999999999999999998875321 1 2345
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCC
Q 007461 224 YCQIMEAYYK--------IGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 224 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~ 254 (603)
+..+..++.. .|++++|...|+++....+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 6677778888 889999999998888766543
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=3.1e-07 Score=85.74 Aligned_cols=180 Identities=6% Similarity=-0.013 Sum_probs=107.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 007461 87 LHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK--KWDSIVSLSEDFKIYNVLPDAHTCSRLVASC-- 162 (603)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-- 162 (603)
+.+..+.+...+.|+++++.++... +-+...|+..-..+...| ++++++.+++.+...+ +-+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 3444445555555888888888653 334445777777777777 7888888888777765 44555565554444
Q ss_pred --Hcc---CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 163 --VRA---RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY--STILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 163 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
... +++++++.+++.+...++.+..+|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.-...+.+.|
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 444 56677777777777777777777776666666666666 666666666665443 5555555555454444
Q ss_pred C------HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 236 D------SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 236 ~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
. ++++.+.++.+...++. |..+|+.+...+.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~----n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQ----NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCC----CccHHHHHHHHHHhcCC
Confidence 4 45555555554444332 23345444444444444
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=1.9e-08 Score=89.46 Aligned_cols=168 Identities=10% Similarity=0.016 Sum_probs=102.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHHhcC
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR----------------LVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
.+-.....+...|++++|+..|+...+.. +.+...|.. +...+.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34444556667777777777777777654 223444555 6667777777777777777777777
Q ss_pred CcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCCccHH
Q 007461 183 EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD--SEKVAALFLECKSRKLDSTPFSTH 260 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~ 260 (603)
|.+..+|..+...|...|++++|+..|++.++.... +..++..+...|...|+ .+.+...++.... +.+ ...
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~ 158 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS----PTK-MQY 158 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C----CCH-HHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----CCc-hhH
Confidence 777777777777777777777777777777765432 55666666666655543 2333444443321 111 112
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS 295 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 295 (603)
.+..+..++...|++++|+..|++.++. .|+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 3344455556667777777777777654 45543
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=3.6e-08 Score=92.83 Aligned_cols=207 Identities=12% Similarity=0.009 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHHHH
Q 007461 309 EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA----KLKI-SDCISCAIVNGFSKRRGYWAA 383 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a 383 (603)
++++|...+..+ ...|...|++++|.+.|.+..+. +-.+ ...+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 377777777665 34567788888888888776543 2111 135678888888888999998
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCC---Cc--CHhhHHHHHHHHHccCCHHH
Q 007461 384 VKVYEQLISQGC---IP--GQVTYASIINAYCRI-ALYSKAEKVFIEMQQKGF---DK--CVVAYSSMVAMYGKTGRIRD 452 (603)
Q Consensus 384 ~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~ 452 (603)
+..|++..+... .+ -..++..+...|... |++++|...|++..+... .+ ...++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888887665311 11 134677888888886 999999999998876421 11 13568889999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcC
Q 007461 453 AMWLVAKMKAKGCEPNV------WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV------SYTTVISAYN--RAR 518 (603)
Q Consensus 453 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~--~~g 518 (603)
|...|++..+....... ..|..+..++...|++++|...|++..+ +.|+.. .+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999885322211 1567778889999999999999999874 344422 2445566665 456
Q ss_pred CHHHHHHHHHHHHH
Q 007461 519 EFDMCVKFYNEFRM 532 (603)
Q Consensus 519 ~~~~a~~~~~~~~~ 532 (603)
++++|+..|+.+..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 78888888876644
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=6.3e-08 Score=78.80 Aligned_cols=123 Identities=14% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (603)
+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.+.|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 3333444444444444444433322 1223333333444444444444444444443332 2233334444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 495 (603)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 444444444443321 122333333444444444444444444443
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=3.4e-07 Score=85.51 Aligned_cols=233 Identities=11% Similarity=-0.025 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhcCCcchhhHHHHHhhh----hhc---CcH
Q 007461 132 KWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR--KFKIANTLLQVFITDGEIALLAFNSAMGGY----NKL---HMY 202 (603)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 202 (603)
..++|+.+++.+...+ +-+..+|+.--..+...+ +++++++.++.+....|.+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3468999999999887 556778888888888888 999999999999999999999998776666 555 789
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC------
Q 007461 203 YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE--KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR------ 274 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 274 (603)
++++.+++.+.+.... |..+|+.-...+.+.|.++ ++.+.++.+.+.++. |-.+|+.-...+...++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~----N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK----NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccccchhhh
Confidence 9999999999987644 8888988888888899888 999999999987765 45689888888888777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007461 275 AFEALKFFRDMKEKGILEDPSIYASLICSFASITE-VKLAEELFKEAEEKG--MLRDPEVCLKLVLMYIEEGLVEKTLDV 351 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 351 (603)
++++++.+++++...+ -|...|+-+-..+.+.|. .+.+..+..++.+.+ -..++..+..+.+.|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999988743 377888888888877776 444555666655433 245788999999999999999999999
Q ss_pred HHHHHh-CCCCCCHhhHHHHHH
Q 007461 352 VESMKN-AKLKISDCISCAIVN 372 (603)
Q Consensus 352 ~~~~~~-~~~~~~~~~~~~li~ 372 (603)
++.+.+ .++ .....|+..++
T Consensus 281 ~~~l~~~~Dp-ir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNP-IRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCG-GGHHHHHHHHH
T ss_pred HHHHHhccCh-HHHHHHHHHHh
Confidence 999987 454 34555655443
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=9.2e-08 Score=86.15 Aligned_cols=184 Identities=9% Similarity=0.004 Sum_probs=103.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchh---hHHH
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVL-P-DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALL---AFNS 191 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 191 (603)
...+..+...+.+.|++++|+..|+.+.+.... | ....+..+..++.+.|++++|+..|+++.+..|.+.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677777777777777777765311 1 1345666677777777777777777777776654332 4444
Q ss_pred HHhhhhh------------------cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 192 AMGGYNK------------------LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD 253 (603)
Q Consensus 192 l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (603)
+...+.. .|++++|+..|+++++.... +...+...... + .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~------~~~~~~~----- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V------FLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H------HHHHHHH-----
Confidence 4444433 45667777777766664211 12222111000 0 0000000
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED----PSIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
.....+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01234556666777777777777777654 232 2356666667777777777777777666553
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=1.3e-08 Score=87.82 Aligned_cols=162 Identities=12% Similarity=0.094 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh-hhh
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG-YNK 198 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 198 (603)
+..+...+.+.|++++|+..++...+.. +.+...+..+...+...|++++|+..++.+....+ +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 4455566666777777777777665543 44556666666667777777777777776665554 44333222211 112
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.+...+|+..+++..+.... +...+..+...+...|++++|...|+++...++.+. +...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ--DGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--TTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC--hHHHHHHHHHHHHHhCCCCcH
Confidence 22233456666666654322 456666677777777777777777777666554321 123566677777777777777
Q ss_pred HHHHHHHH
Q 007461 279 LKFFRDMK 286 (603)
Q Consensus 279 ~~~~~~m~ 286 (603)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=5e-06 Score=83.99 Aligned_cols=123 Identities=10% Similarity=0.038 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT-GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMH 479 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 479 (603)
.|...+....+.+..+.|..+|+.. +.. ..+...|......-.+. ++.+.|..+|+...+. .+-+...|...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4455555555566677777777777 221 12333443222222222 3577778888777764 222344455566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 480 GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 480 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
...|+.+.|..+|+++. .....|...+..=...|+.+.+..++++..
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777762 134556666665566677777777777665
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=3.3e-08 Score=92.80 Aligned_cols=166 Identities=11% Similarity=0.041 Sum_probs=95.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
+...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+.+.|++++|...++++....+............
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455556666666666666666666666554 44555666666666666666666666666655544333333333333
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
+...++.++|+..+++..+... .+...+..+...+...|++++|...|+++...++... +...+..++..+...|+.
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA--DGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG--GGHHHHHHHHHHHHHCTT
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc--cchHHHHHHHHHHHcCCC
Confidence 5555556666666666655432 2455566666666666666666666666665543321 134566666666666666
Q ss_pred HHHHHHHHHH
Q 007461 276 FEALKFFRDM 285 (603)
Q Consensus 276 ~~A~~~~~~m 285 (603)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 6666666554
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=7e-08 Score=85.69 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHH----------------HHhhhhhcCcHHHHHHHHHHHHhCCCC
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNS----------------AMGGYNKLHMYYSTILVYEKMKSAGIV 218 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (603)
+......+...|++++|+..|++.....|.+..+|.. +...|.+.|++++|+..|++.++....
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 3344556678899999999999998887767766666 555555555555555555555443221
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 219 LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 219 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
+...+..+...+...|++++|...|++....+
T Consensus 87 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 87 -NVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444455555555555555555555544433
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.8e-08 Score=106.86 Aligned_cols=153 Identities=7% Similarity=-0.107 Sum_probs=77.6
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 128 VQSKKWDSIVSLSEDFK--------IYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
...|++++|++.++... +.. +.+...+..+...+...|++++|+..|+++.+..+.+..+|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 222 233444555555555555555555555555555555555555555555555
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEAL 279 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 279 (603)
|++++|+..|++..+.... +...+..+..+|.+.|++++ .+.|++..+.++. +..+|..+..++.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG----VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc----hHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555543221 34445555555555555555 5555555444332 1234555555555555555555
Q ss_pred HHHHHHHH
Q 007461 280 KFFRDMKE 287 (603)
Q Consensus 280 ~~~~~m~~ 287 (603)
+.|++..+
T Consensus 555 ~~~~~al~ 562 (681)
T 2pzi_A 555 RTLDEVPP 562 (681)
T ss_dssp HHHHTSCT
T ss_pred HHHHhhcc
Confidence 55555443
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=4.2e-08 Score=93.19 Aligned_cols=159 Identities=9% Similarity=-0.004 Sum_probs=79.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc--CHhhHHH
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQGC---IP--GQVTYASIINAYCRIALYSKAEKVFIEMQQK----GFDK--CVVAYSS 439 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~ 439 (603)
...|...|++++|...|.+..+... .+ -..+|..+...|...|++++|...|++..+. | .+ ...++..
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDR 121 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 3445566666666666665543210 00 0234555556666666666666666655432 1 11 1234555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCC---CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAKGC---EP--NVWIYNSLMDMHGRAKNLRQVEKLWKEMERR----KVTPD-KVSYTT 509 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ 509 (603)
+...|.+ |++++|+..+++..+..- .+ ...++..+...|...|++++|+..|++..+. +..+. ...+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 5555555 666666666665543200 00 0234555555556666666666666555432 11111 113444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 007461 510 VISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~ 531 (603)
+..++...|++++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 4444555566666666665555
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=5.3e-07 Score=80.20 Aligned_cols=177 Identities=12% Similarity=0.028 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC----CHHHHHHHH
Q 007461 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG----RIRDAMWLV 457 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 457 (603)
+|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 44555556666666666667776666666654 34555566666655 4 667777777
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007461 458 AKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVT-PDKVSYTTVISAYNR----AREFDMCVKFYN 528 (603)
Q Consensus 458 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~ 528 (603)
++..+.| +...+..|...|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7666543 45555666666655 66777777777777654321 014556666666666 567777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhCCC
Q 007461 529 EFRMNGGVIDRAIAGIMVGVFSKL-S-----QIEELVKLLQDMKSEGT 570 (603)
Q Consensus 529 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 570 (603)
+..+.+ .+...+..|...|... | ++++|..++++..+.|.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 776651 1333455555555432 2 67777777777776653
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=2.8e-08 Score=82.99 Aligned_cols=133 Identities=8% Similarity=-0.119 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 007461 99 LAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVF 178 (603)
Q Consensus 99 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 178 (603)
.|+..++.+.... +-+...+-.+...|.+.|++++|++.|++..+.+ +.+..+|..+...+...|++++|+..|++.
T Consensus 15 ~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 15 RYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3555555554321 1122234445555556666666666666555554 344555555555555556666666666655
Q ss_pred HhcCCcchhhHHHHHhhhhhcCcHHHHHHH-HHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 179 ITDGEIALLAFNSAMGGYNKLHMYYSTILV-YEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
.+..|.+..+|..+...|.+.|++++|.+. +++..+..+. ++.+|......+.+.|
T Consensus 92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 555555555555555555555555544433 3444443211 3344444444444333
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=1e-08 Score=85.60 Aligned_cols=108 Identities=9% Similarity=-0.006 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHH
Q 007461 130 SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVY 209 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (603)
.|++++|+..++...... +.+...+-.+...|.+.|++++|++.|++..+..|.+..+|..+...|.+.|++++|+..|
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 344445555444443221 1122233344444555555555555555555544444555555555555555555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 210 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
++..+.... +..++..+...|.+.|+.++
T Consensus 89 ~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 89 RRSVELNPT-QKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence 544443211 33444444444444444443
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=4.2e-07 Score=81.77 Aligned_cols=188 Identities=5% Similarity=-0.126 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc---hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCCh--hhHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIA---LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDS--GCYCQ 226 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ 226 (603)
...+-.+...+.+.|++++|+..|+.+....|.+ ..++..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556667888899999999999998876643 467888899999999999999999999875432111 13444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 227 IMEAYYK------------------IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 227 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
+..++.+ .|+.++|...|+++....+.... ++...... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~----a~~a~~~l----------~~~~~~~~-- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY----TTDATKRL----------VFLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT----HHHHHHHH----------HHHHHHHH--
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh----HHHHHHHH----------HHHHHHHH--
Confidence 5555544 35666666666666665544321 22111100 00000000
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 289 GILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR--DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK 361 (603)
Q Consensus 289 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 361 (603)
.....+...+.+.|++++|...++.+.+..... ....+..+..+|.+.|+.++|.+.++.+...++.
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 112345667889999999999999999875321 1356888999999999999999999999887653
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=4.1e-08 Score=84.62 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=127.7
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS- 161 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 161 (603)
+......+...++..+ |...|+.+.+.. +.+...+..+...+.+.|++++|+..++...+.. |+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~-A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQ-ALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHH-HHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 4445556677788776 999999987653 4567889999999999999999999999987665 355444333222
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a 240 (603)
+...++...|...+++.....|.+..++..+...+...|++++|+..|+++.+....+ +...+..+...+...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2222334457899999999989899999999999999999999999999999876543 356888999999999999999
Q ss_pred HHHHHHHH
Q 007461 241 AALFLECK 248 (603)
Q Consensus 241 ~~~~~~~~ 248 (603)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998654
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=7.9e-08 Score=90.17 Aligned_cols=167 Identities=9% Similarity=-0.036 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHH-HH
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYC-QI 227 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l 227 (603)
+.+...+..+...+...|++++|...|++.....|.+..++..+...+.+.|++++|...++++... .|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 4455666777777888888888888888888888888888888888888888888888888877664 34433222 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 007461 228 MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFAS 306 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 306 (603)
...+.+.++.+.|.+.|++....++. +...+..+...+...|++++|++.|+++.+..... +...+..++..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE----DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 23355667777777777777666543 34567777888888888888888888777653221 24566667777777
Q ss_pred cCCHHHHHHHHHHHH
Q 007461 307 ITEVKLAEELFKEAE 321 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~ 321 (603)
.|+.+++...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 777666666665543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=1.3e-06 Score=77.73 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC----CHHHHH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG----RAFEAL 279 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~ 279 (603)
+|++.|++..+.| ++..+..+...|...+++++|.+.|++..+.+. ..++..|...|.. + ++++|+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~------~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD------GDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 3445555555543 445566666666666666666666666655432 2355556666655 4 566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHH
Q 007461 280 KFFRDMKEKGILEDPSIYASLICSFAS----ITEVKLAEELFKEAEEKGML-RDPEVCLKLVLMYIE----EGLVEKTLD 350 (603)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~ 350 (603)
+.|++..+.| +...+..+...+.. .++.++|.+++++..+.+.. .++..+..|..+|.. .+++++|..
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 6666665543 44455555555544 55666666666666554411 014555555555555 555666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 007461 351 VVESMKNAKLKISDCISCAIVNGFSKR-R-----GYWAAVKVYEQLISQG 394 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~g 394 (603)
.|++..+.+. +...+..|...|... | +.++|+..|++..+.|
T Consensus 151 ~~~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6665554411 122344444444332 1 4555555555555544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=1.1e-07 Score=98.82 Aligned_cols=156 Identities=7% Similarity=-0.099 Sum_probs=116.4
Q ss_pred CCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 007461 94 PQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANT 173 (603)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 173 (603)
++..+ |.+.|+++.+.. +.+...|..+...+.+.|++++|+..+++..+.. +.+..++..+...+...|++++|.+
T Consensus 3 g~~~~-A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPR-ELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34444 888888887653 4457788888899999999999999999988775 5567888888888999999999999
Q ss_pred HHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHhC
Q 007461 174 LLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI---GDSEKVAALFLECKSR 250 (603)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 250 (603)
.+++..+..+.+..++..+...|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988888888888999999999999999999999988876432 567788888888888 8999999999888877
Q ss_pred CCCC
Q 007461 251 KLDS 254 (603)
Q Consensus 251 ~~~~ 254 (603)
++..
T Consensus 158 ~p~~ 161 (568)
T 2vsy_A 158 GVGA 161 (568)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6553
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=1.6e-07 Score=89.10 Aligned_cols=127 Identities=11% Similarity=0.067 Sum_probs=67.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHH
Q 007461 229 EAYYKIGDSEKVAALFLECKSRKLDSTP--FSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG---ILED--PSIYASLI 301 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll 301 (603)
..|...|++++|...|.+.......... .-..+|+.+...|...|++++|++.|++..+.- -.+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666666666666554432111000 113456777777777778888777777665321 0111 23455555
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 302 CSFASITEVKLAEELFKEAEEKGMLR-----DPEVCLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
..+.. |++++|...+++..+..... ...++..+...|.+.|++++|...|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56655 67777766666655431100 12344555555666666666665555544
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=1.6e-07 Score=97.72 Aligned_cols=152 Identities=9% Similarity=-0.124 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHH
Q 007461 131 KKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYE 210 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (603)
|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+..+.+..+|..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 33456666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc---CCHHHHHHHHHHHHH
Q 007461 211 KMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS---GRAFEALKFFRDMKE 287 (603)
Q Consensus 211 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 287 (603)
+..+.... +...+..+...|.+.|++++|.+.|++..+.++. +...+..+...+... |++++|.+.+++..+
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE----EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 66654322 4556666666666666666666666666555432 234566666666666 666666666666665
Q ss_pred C
Q 007461 288 K 288 (603)
Q Consensus 288 ~ 288 (603)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 4
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=4.7e-06 Score=78.58 Aligned_cols=161 Identities=7% Similarity=-0.014 Sum_probs=103.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 007461 87 LHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK-KWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRA 165 (603)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 165 (603)
++++.+.+...+.|+++++.++... +-+...|+..-..+...| .+++++.+++.+...+ +-+..+|+.-...+.+.
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 3444444444444888888888753 334556788777777777 4888888888888776 56677777776666665
Q ss_pred -C-ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 166 -R-KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY--------STILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 166 -~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
+ ++++++++++.+...++.+..+|+.-.-.+.+.+.++ ++++.++++++.++. |...|+.....+.+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 5 7778888888888777777778777666666665555 566666666655433 5555555555555555
Q ss_pred C-------HHHHHHHHHHHHhCC
Q 007461 236 D-------SEKVAALFLECKSRK 251 (603)
Q Consensus 236 ~-------~~~a~~~~~~~~~~~ 251 (603)
. ++++.+.+++....+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHHHHhC
Confidence 4 344444444444433
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=7.4e-06 Score=77.24 Aligned_cols=235 Identities=9% Similarity=-0.054 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc-C-cHHHHHH
Q 007461 131 KKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR-KFKIANTLLQVFITDGEIALLAFNSAMGGYNKL-H-MYYSTIL 207 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 207 (603)
+..++|+++++.+...+ +-+..+|+.--..+...| ++++++..++.+....+.+..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34568999999999887 566778888888887888 599999999999999999999999988888777 7 8899999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC-----
Q 007461 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE--------KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR----- 274 (603)
Q Consensus 208 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 274 (603)
+++++.+.... |..+|+.-...+.+.|.++ ++.+.++++.+.++. |-.+|+.....+.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~----N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR----NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccccccch
Confidence 99999987644 7778887666666666655 899999999887754 45689999999888886
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH--------------------HHHHHHHHHHHHcC-----CCC
Q 007461 275 --AFEALKFFRDMKEKGILEDPSIYASLICSFASITEV--------------------KLAEELFKEAEEKG-----MLR 327 (603)
Q Consensus 275 --~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~ 327 (603)
++++++.+++.+... .-|...|+-+-..+.+.|.. ....+....+...+ ..+
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 799999999998863 22677777766666555442 33333333333222 146
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007461 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVN 372 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 372 (603)
++.....|++.|...|+.++|.++++.+.+.--+....-|+-.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 788999999999999999999999999975422234444554443
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=3e-06 Score=79.63 Aligned_cols=129 Identities=11% Similarity=0.009 Sum_probs=68.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 007461 228 MEAYYKIGDSEKVAALFLECKSRKLDSTPFS--THMYKILCDSLGKSGRAFEALKFFRDMKEKGIL-ED----PSIYASL 300 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 300 (603)
+..+...|++++|..++++............ ...+..+...+...|++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556677777777777777665332111000 112334556666666777777777777653222 12 1245666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 301 ICSFASITEVKLAEELFKEAEEK-----GMLR-DPEVCLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
...+...|++++|...++++.+. +..+ ...++..+...|.+.|++++|.+.+++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666666666666666531 1000 12244455555555555555555555443
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=5.5e-06 Score=77.83 Aligned_cols=163 Identities=9% Similarity=0.015 Sum_probs=110.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCcCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HhHHHH
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKG-FDKCV----VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE-PN----VWIYNS 474 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 474 (603)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677788888888888876642 12221 13334666666777888888888888763222 22 235788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 007461 475 LMDMHGRAKNLRQVEKLWKEMER----R-KVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVID-RAIAG 543 (603)
Q Consensus 475 li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 543 (603)
+...|...|++++|...++++.+ . +..+.. .++..+...|.+.|++++|++.+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888888763 1 111222 35778888888889999998888877643 22222 45778
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHh
Q 007461 544 IMVGVFSKLS-QIEELVKLLQDMKS 567 (603)
Q Consensus 544 ~l~~~~~~~g-~~~~A~~~~~~m~~ 567 (603)
.+..+|.+.| .+++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888888 46888888887754
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=9e-07 Score=74.99 Aligned_cols=128 Identities=13% Similarity=0.017 Sum_probs=85.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
..+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...+++.....+.+..+|..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 356666677777778888888777777654 4456677777777777777777777777777776667777777777777
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHHcCCHHHHHHHHHHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYC--QIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
..|++++|...|++..+.... +...+. .++..+.+.|++++|.+.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777777664322 333332 2333355667777776666554
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=6.5e-07 Score=71.91 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+......+.+.|++++|+..|++..+.+ +.+..+|..+..++.+.|++++|+..+++..+.++.+..+|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45555666666666666666666666554 44556666666666666666666666666666666666666666666666
Q ss_pred cCcHHHHHHHHHHHHhC
Q 007461 199 LHMYYSTILVYEKMKSA 215 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~ 215 (603)
.|++++|++.|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66666666666666553
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=1.5e-06 Score=77.30 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+..+...+...|++++|+..+++.. .|+..++..+...+...|++++|...+++.....+.+..+|..+...|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34556667777888888888887663 56777788888888888888888888888877777777778888888888
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDS----------------GCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
.|++++|++.|++..+.... +. ..+..+..+|.+.|++++|.+.|+......
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888777764321 11 455556666666666666666666665544
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1.4e-06 Score=69.58 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=62.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...++++....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4456666666667777777777777666554 345556666666666666666666666666665555566666666666
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|...|+++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=2.4e-06 Score=77.80 Aligned_cols=189 Identities=8% Similarity=-0.059 Sum_probs=123.0
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHH-------HhhhhhcCcHHHHHHHHHHHHhCCCCCC----------------
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSA-------MGGYNKLHMYYSTILVYEKMKSAGIVLD---------------- 220 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------- 220 (603)
..++...|.+.|.++...+|.....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888888888888888888 5666666666666666655544 1121
Q ss_pred ------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-
Q 007461 221 ------SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED- 293 (603)
Q Consensus 221 ------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 293 (603)
..........+...|++++|.++|+.+...++ .+. ....+...+.+.+++++|+..|+...... .|.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p----~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS----EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC----HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 11233456677788888888888877665432 123 55566667888888888888887544321 111
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 294 -PSIYASLICSFASITEVKLAEELFKEAEEKGMLRD--PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 294 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
...+..+..++...|++++|...|++.......|. .........++.+.|+.++|..+|+++...++
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 23556666677777777777777777764332132 33455566666777777777777777766554
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=5.3e-07 Score=79.45 Aligned_cols=157 Identities=8% Similarity=-0.012 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh------cCCcchhhHHHHHhhhhhcCcH
Q 007461 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT------DGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
..|++++|.++++.+.. .......++..+...+...|++++|...+++... ..+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45566666664433322 1112344555555556666666666666655544 1122344555555666666666
Q ss_pred HHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHhccCC
Q 007461 203 YSTILVYEKMKSA----GIVL--DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP--FSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 203 ~~a~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 274 (603)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++.......... ....++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666655554432 1011 1233455555666666666666666554422110000 012234455555555666
Q ss_pred HHHHHHHHHHHH
Q 007461 275 AFEALKFFRDMK 286 (603)
Q Consensus 275 ~~~A~~~~~~m~ 286 (603)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655555543
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=5e-06 Score=73.82 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 448 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 448 (603)
.+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444555555555555555442 3455555555666666666666666666655543 344555666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 449 RIRDAMWLVAKMKAKGCEPN----------------VWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498 (603)
Q Consensus 449 ~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 498 (603)
++++|.+.|++..+.. +.+ ...+..+..+|...|++++|...|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666665531 111 245556666666666666666666666643
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=1.3e-06 Score=70.66 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=46.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++.....+.+..++..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3344444455555555555555555544432 223444444444444455555555555554444444444444444444
Q ss_pred hhcCcHHHHHHHHHHHHh
Q 007461 197 NKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~ 214 (603)
...|++++|++.|++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 455555555555444443
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=1.6e-06 Score=69.56 Aligned_cols=99 Identities=5% Similarity=-0.022 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+......|.+.|++++|+..|++..+..|.+..+|..+..+|.+.|++++|+..|++.++.+.. +...|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 455556666777777777777777777766666777777777777777777777777766664322 4556666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCC
Q 007461 233 KIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~ 252 (603)
..|++++|.+.|++..+.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 66777777766666665543
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=3.9e-07 Score=75.60 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=65.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+.+.|++++|+..|+...+.+ +.+...|..+..+|...|++++|+..|++.....|.++.+|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3455666666666777777777777666654 445666666666666667777777777766666666666666666666
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|+..|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666654
No 131
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=5.6e-05 Score=70.93 Aligned_cols=190 Identities=8% Similarity=-0.054 Sum_probs=127.4
Q ss_pred hcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKK----------WDSIVSLSEDFKIYNVLPDAHTCSRLVA 160 (603)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 160 (603)
.+.+...+.|+++++.+.... +-+...|+.--..+...+. +++++.+++.+...+ +-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345666656888888888753 3334457765554444333 567888888887765 567778877777
Q ss_pred HHHccC--ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---
Q 007461 161 SCVRAR--KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM-YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI--- 234 (603)
Q Consensus 161 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--- 234 (603)
.+.+.+ ++++++.+++.+...++.+..+|+.-.-.+...|. ++++++.++.+++.++. |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 777766 47888888888888888888888877777777777 57888888888876554 667777666666554
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHC
Q 007461 235 -----------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS-----------GRAFEALKFFRDMKEK 288 (603)
Q Consensus 235 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 288 (603)
+.++++.+.++.....++. |..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~----d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777766665543 344666555554444 3456666666666654
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=6.6e-06 Score=77.29 Aligned_cols=168 Identities=9% Similarity=-0.058 Sum_probs=91.4
Q ss_pred hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc--cH
Q 007461 187 LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD-----SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPF--ST 259 (603)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~ 259 (603)
..+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|...+++........... ..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444455666667777777777766655422111 0122334455566677777777777665433221111 13
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-C
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKE---K-GILE--DPSIYASLICSFASITEVKLAEELFKEAEEKG----MLR-D 328 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~-~ 328 (603)
.+|+.+...|...|++++|+..|++..+ . +..+ ...++..+...|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4667777777777777777777776652 1 1111 11355666666666666666666666655431 000 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKT-LDVVES 354 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a-~~~~~~ 354 (603)
..++..+...|.+.|++++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34555566666666666666 444444
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=1.5e-06 Score=69.95 Aligned_cols=118 Identities=12% Similarity=0.002 Sum_probs=70.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++......+.+..++..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4455566666666677777777776666553 345556666666666666666666666666665555566666666666
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
...|++++|...|++..+.... +...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666666666666665554321 44445555555554443
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=1.9e-07 Score=77.59 Aligned_cols=98 Identities=7% Similarity=-0.024 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+..+...+.+.|++++|...|+++...+|.+...|..+..+|...|++++|+..|++..+.... ++..|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 344455555555566666666666665555555555555555555566666666655555554322 3445555555555
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 007461 233 KIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~ 251 (603)
+.|++++|...|++.....
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555554443
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=5.2e-06 Score=77.99 Aligned_cols=168 Identities=15% Similarity=0.024 Sum_probs=107.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcch------hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC---CC--hhh
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIAL------LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV---LD--SGC 223 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~~ 223 (603)
+...+..+...|++++|.+.++......+... ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33444555666666666666666555433211 22334555566777788888877777653211 11 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCC-CHH
Q 007461 224 YCQIMEAYYKIGDSEKVAALFLECKS---RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG----ILE-DPS 295 (603)
Q Consensus 224 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~ 295 (603)
++.+...|...|++++|...|++... ...........+|+.+...|...|++++|++.+++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77788888888888888888887762 2221111122578888888889999999998888876431 111 156
Q ss_pred HHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 007461 296 IYASLICSFASITEVKLA-EELFKEAEE 322 (603)
Q Consensus 296 ~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 322 (603)
+|..+...+...|+.++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 778888888899999888 776776654
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.2e-06 Score=79.85 Aligned_cols=190 Identities=12% Similarity=-0.072 Sum_probs=129.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHccCChHHHHHHHHHHHhcCCc------c----------
Q 007461 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRL-------VASCVRARKFKIANTLLQVFITDGEI------A---------- 185 (603)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~------~---------- 185 (603)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...++.-....+. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4678888888888887776 5566777766 45555555555555555555443331 1
Q ss_pred -----hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-cH
Q 007461 186 -----LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPF-ST 259 (603)
Q Consensus 186 -----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~ 259 (603)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... ++. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHH
Confidence 2233456677888889999999988877654 433355566667888899999999987443321 111 12
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILED--PSIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
.++..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3677788888999999999999998874432253 3355666677778899999999999988865
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=2.5e-06 Score=72.21 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+..+...+...|+++.|...|+......+.+..+|..+...+...|++++|+..+++..+... .+...+..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34555666666777777777777777776666677777777777777777777777777666532 24556666677777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHH--HHHHHHHhccCCHHHHHHHHHHH
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMY--KILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m 285 (603)
..|++++|...|++.....+.. ...+ -.++..+...|++++|++.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHD----KDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777666554321 1233 22333355566666666666554
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=1.2e-06 Score=75.31 Aligned_cols=121 Identities=8% Similarity=0.059 Sum_probs=74.0
Q ss_pred hcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCh-
Q 007461 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS-CVRARKF- 168 (603)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~- 168 (603)
...++..+ |...|+.+.+.. +.+...|..+...+...|++++|+..+++..+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~-A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEA-QLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CC-CCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHH-HHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 34445544 666676666542 3455666677777777777777777777766554 3455566666666 5566666
Q ss_pred -HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 169 -KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 169 -~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
++|...++......+.+..++..+...|...|++++|...|++..+.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66777766666666666666666666666666666666666666654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=1.3e-06 Score=81.40 Aligned_cols=95 Identities=11% Similarity=-0.079 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
..+..+...+.+.|++++|+..|+...+.. +.+...|..+...+.+.|++++|...+++..+..+.+..++..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444444444445555544444444432 2234444444444444444444444444444444444444444444444
Q ss_pred hcCcHHHHHHHHHHHH
Q 007461 198 KLHMYYSTILVYEKMK 213 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~ 213 (603)
..|++++|+..|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444433
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.6e-06 Score=76.37 Aligned_cols=124 Identities=11% Similarity=0.018 Sum_probs=71.9
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHHcCCH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA----GIV-LDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~ 237 (603)
...|++++|.+.++.+...+.....++..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677888887555555443356677777777788888888888777776551 111 1234556666667777777
Q ss_pred HHHHHHHHHHHhC---CCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 007461 238 EKVAALFLECKSR---KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 238 ~~a~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 286 (603)
++|.+.+++.... ..........++..+...+...|++++|.+.+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777776665432 110000123445566666666666666666666554
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=3.6e-07 Score=85.34 Aligned_cols=195 Identities=9% Similarity=0.030 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
+...+..+...+.+.|++++|...|++.....+.+...|..+...|.+.|++++|+..+++..+.... +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45566777777888888888888888888877778888888888888888888888888888775432 56677788888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 310 (603)
|...|++++|...|++....++.... .+...+....+ ..++.. +..........+......+ ..+ ..|+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~----~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRL----NFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC----CCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHH
Confidence 88888888888888776654321100 01111111111 111111 1222222233333333333 222 25777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 007461 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE-GLVEKTLDVVESMKN 357 (603)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 357 (603)
++|.+.++...+.. +.+......+...+.+. +.+++|.++|....+
T Consensus 152 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88887777766543 12333444444445554 667788888887664
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=6.4e-07 Score=74.34 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=17.5
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEK 211 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (603)
..|++++|...|+.+....+.+...|..+..+|...|++++|+..|++
T Consensus 33 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 33 QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=1.9e-06 Score=71.47 Aligned_cols=109 Identities=8% Similarity=-0.129 Sum_probs=94.1
Q ss_pred HHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 104 YNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 104 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
|+.+.... +.+...+..+...+.+.|++++|+..|+.....+ +.+...|..+..++...|++++|+..|++.....|
T Consensus 10 ~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555432 3355677888899999999999999999998876 66888999999999999999999999999999988
Q ss_pred cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 184 IALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.+..+|..+..+|...|++++|+..|++..+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988774
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.6e-06 Score=74.45 Aligned_cols=125 Identities=6% Similarity=-0.040 Sum_probs=106.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh-hhhcCcH--HH
Q 007461 128 VQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG-YNKLHMY--YS 204 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 204 (603)
...|++++|+..++...+.. +.+...|..+...|...|++++|...|++.....+.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45788999999999988776 56788999999999999999999999999999888889999999999 8899998 99
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007461 205 TILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 205 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 254 (603)
|+..+++..+.+.. +...+..+...|...|++++|...|+......+..
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999999886432 57788899999999999999999999998877654
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=2.6e-06 Score=68.88 Aligned_cols=119 Identities=10% Similarity=-0.004 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
.+...+..+...+...|++++|...+++.....+.+..++..+...+...|++++|+..+++..+... .+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 34567777777777888888888888888777777777788888888888888888888877776532 25666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC
Q 007461 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 273 (603)
.+.+.|++++|.+.|++.....+. +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS----CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG----GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhc
Confidence 777777777777777776655432 1234555555554433
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=4.9e-06 Score=66.20 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+...|++++|...++++....+.+..++..+...+...|++++|+..++++.+... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 345555666666666666666666666665555556666666666666666666666666655422 2444555555666
Q ss_pred HHcCCHHHHHHHHHHHHhCC
Q 007461 232 YKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~ 251 (603)
...|++++|...|+++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 66666666666666555443
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=3.7e-06 Score=80.66 Aligned_cols=123 Identities=7% Similarity=-0.054 Sum_probs=75.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD--------------AHTCSRLVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
...+..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..+++.....
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666777777777777777777777776541111 3555666666666666666666666666665
Q ss_pred CcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 007461 183 EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 240 (603)
+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+.++|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666554322 444555555556566665555
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=1.7e-06 Score=71.28 Aligned_cols=99 Identities=13% Similarity=-0.092 Sum_probs=78.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
+...+..+...+.+.|++++|+..|+.....+ +.+...|..+..++...|++++|...|+......|.+..+|..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34456667777888888888888888887765 55677777888888888888888888888888877788888888888
Q ss_pred hhhcCcHHHHHHHHHHHHhC
Q 007461 196 YNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~ 215 (603)
|...|++++|+..|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888877764
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=4.3e-06 Score=67.07 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=70.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.....+.+..+|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456666677777777777777777777665 455667777777777777777777777777777776777777777777
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|+..|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777766654
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=5.1e-06 Score=66.78 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+...|+++.|...+++.....+.+..++..+...+...|++++|+..+++..+... .+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 344555555666666666666666666665555556666666666666666666666666555422 1344555555566
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
.+.|++++|...|++.....+. +...+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD----NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHhc
Confidence 6666666666666555544322 12344444444444443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=9.3e-06 Score=63.79 Aligned_cols=98 Identities=9% Similarity=-0.067 Sum_probs=61.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++.....+.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455566666666666777776666666554 345556666666666666666666666666665555566666666666
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665554
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.36 E-value=0.00044 Score=64.85 Aligned_cols=166 Identities=10% Similarity=0.001 Sum_probs=108.8
Q ss_pred HhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 128 VQSKKWD-SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK----------FKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 128 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
.+.|.+. +|+.+++.+...+ +-+..+|+.--..+...++ +++++.+++.+....|.+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554 7888888888776 4455566654444433332 56778888888888888888888777777
Q ss_pred hhcCc--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc-
Q 007461 197 NKLHM--YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD-SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS- 272 (603)
Q Consensus 197 ~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 272 (603)
...+. +++++.+++.+.+.+.. |...|+.-...+...|. ++++.+.++.+...++. |..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~----N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS----NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHHS
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhh
Confidence 77763 77888888888876544 67777777777777777 57888888887776544 345666665555443
Q ss_pred -------------CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007461 273 -------------GRAFEALKFFRDMKEKGILEDPSIYASL 300 (603)
Q Consensus 273 -------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (603)
+.++++++.++...... +-|...|+-+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34566666666666542 1144455433
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=4.6e-06 Score=64.92 Aligned_cols=99 Identities=7% Similarity=-0.060 Sum_probs=64.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc--chhhHHHHH
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI--ALLAFNSAM 193 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 193 (603)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++.....+. +..+|..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455566666666777777777777666554 345566666666666667777777777766666655 666666666
Q ss_pred hhhhhc-CcHHHHHHHHHHHHhC
Q 007461 194 GGYNKL-HMYYSTILVYEKMKSA 215 (603)
Q Consensus 194 ~~~~~~-~~~~~a~~~~~~m~~~ 215 (603)
..+... |++++|++.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666654
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.32 E-value=3.3e-06 Score=69.47 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=53.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
.+..+...+.+.|++++|...|+.+....|.+...|..+..+|...|++++|+..|++..+.+.. +...+..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 34444455555666666666666666555555556666666666666666666666655554322 44455555555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007461 234 IGDSEKVAALFLECKSR 250 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~ 250 (603)
.|++++|.+.|+.....
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.32 E-value=1.8e-05 Score=75.86 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (603)
+|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555544432 2234445555555555555555555555555543 334445555555555
Q ss_pred ccCCHHHH
Q 007461 446 KTGRIRDA 453 (603)
Q Consensus 446 ~~g~~~~A 453 (603)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.2e-05 Score=64.31 Aligned_cols=97 Identities=8% Similarity=0.011 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+..+...+.+.|++++|...|++.....+.+..+|..+..+|.+.|++++|+..+++..+.+.. +...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 445556666667777777777777777766666777777777777777777777777776665322 4556666666666
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 007461 233 KIGDSEKVAALFLECKSR 250 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~ 250 (603)
..|++++|...|++....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777666665544
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=9.8e-07 Score=77.52 Aligned_cols=95 Identities=12% Similarity=-0.082 Sum_probs=44.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcch----------------hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIAL----------------LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV 218 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (603)
+..+...+...|++++|...|++.....+.+. .+|..+..+|...|++++|+..+++..+...
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p- 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK- 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-
Confidence 33344444444555555555555444333222 3444444455555555555555554444321
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 219 LDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 219 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
.+...+..+..+|...|++++|.+.|++....
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 13344444555555555555555555544443
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=7.8e-06 Score=64.97 Aligned_cols=95 Identities=6% Similarity=-0.161 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
+..+...+.+.|++++|+..++...+.. +.+...|..+..++...|++++|+..|++.....|.+..++..+...|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4455666777778888888887777665 456677777777777777888888877777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHhC
Q 007461 200 HMYYSTILVYEKMKSA 215 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~ 215 (603)
|++++|+..+++.++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777654
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=1.6e-05 Score=64.70 Aligned_cols=99 Identities=12% Similarity=-0.043 Sum_probs=61.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.+...|..+...+...|++++|+..|+...+.. +.+...+..+...+...|++++|...++......+.+..+|..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 345566666666666666666666666666554 3445566666666666666666666666666655555666666666
Q ss_pred hhhhcCcHHHHHHHHHHHHh
Q 007461 195 GYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~ 214 (603)
.|...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665544
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=1.5e-05 Score=67.31 Aligned_cols=101 Identities=15% Similarity=0.015 Sum_probs=85.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.....+.+..+|..+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345677788888888999999999999888775 5577888888888888999999999999988888888888888999
Q ss_pred hhhhcCcHHHHHHHHHHHHhCC
Q 007461 195 GYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
+|...|++++|+..|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999988887753
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=3.3e-05 Score=60.55 Aligned_cols=98 Identities=10% Similarity=-0.060 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+..+...+...|++++|...++......+.+...+..+...+...|++++|...+++..+... .+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44555566666667777777777776666666666666666666666666666666666665432 14555566666666
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 007461 233 KIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~ 251 (603)
..|++++|.+.|+.....+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 6666666666666665543
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=1.4e-05 Score=64.09 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc-------hhhHHH
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-------LLAFNS 191 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 191 (603)
.+..+...+.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|+..+++..+..+.+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666666777777777777666654 4455666666666666677777766666665543321 134455
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHh
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
+...+...|++++|++.|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555566666666666665554
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=1.3e-05 Score=70.26 Aligned_cols=128 Identities=7% Similarity=-0.084 Sum_probs=88.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD----------------AHTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
..+..+...+.+.|++++|+..|++..+.. +.+ ...+..+..++...|++++|+..++.....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666677777888888888888777653 112 266777777788888888888888888887
Q ss_pred CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHH-HHHHHH
Q 007461 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA-ALFLEC 247 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~ 247 (603)
.+.+..++..+..+|...|++++|+..|++..+.... +...+..+..++...++.+++. ..|..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888888887775322 5556666776666666665555 344433
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=9.6e-06 Score=65.14 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc-------hhhHH
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-------LLAFN 190 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 190 (603)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++......+.+ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666777777777777777777776654 4456666667777777777777777777766654433 55666
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666667777777776666654
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=4e-05 Score=64.66 Aligned_cols=99 Identities=6% Similarity=-0.128 Sum_probs=62.3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 512 (603)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++.++.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666667777777777777666542 2355666666666666777777777776666542 123455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 007461 513 AYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 513 ~~~~~g~~~~a~~~~~~~~~~ 533 (603)
+|...|++++|+..|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666777776666666654
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=1.1e-05 Score=62.64 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=56.9
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+..+|..+...+...|++++|...|++..+... .+...+..+...+...|++++|.+.|++.....+. ..+...|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHH
Confidence 344455555555555666666666655555422 24445555666666666666666666666554432 112345666
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHC
Q 007461 265 LCDSLGKS-GRAFEALKFFRDMKEK 288 (603)
Q Consensus 265 li~~~~~~-g~~~~A~~~~~~m~~~ 288 (603)
+...+... |++++|++.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 66666666 6666666666666554
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=2.9e-05 Score=62.20 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV--ID----RAIAGI 544 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 544 (603)
.+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|++.+++.++.+.. .+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555666666666666666655432 113445556666666666666666666665543211 11 124555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 545 MVGVFSKLSQIEELVKLLQDMKSEGTKLDERLY 577 (603)
Q Consensus 545 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 577 (603)
+..++...|++++|++.|++.++. .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666666677777777777766653 3454443
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.4e-05 Score=63.54 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=50.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE----KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
+..+...+...++..+ |.+.|+.+.+. .|+ ...|..+...+...|++++|+..++...+.. +.+...+..+
T Consensus 31 ~~~~a~~~~~~~~~~~-A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 31 LRKEGNELFKCGDYGG-ALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHTTTCHHH-HHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHH-HHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 3444444444444444 55555555543 233 3445555555555555555555555554443 2334444455
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchhhHH
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALLAFN 190 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 190 (603)
...+...|++++|...|++.....+.+..++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 55555555555555555555544444443333
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.20 E-value=1.1e-05 Score=64.20 Aligned_cols=97 Identities=7% Similarity=-0.115 Sum_probs=68.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI 234 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 234 (603)
+..+...+.+.|++++|+..|++.....|.+..+|..+..++...|++++|+..|++..+.... +...+..+..++.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3445556667778888888888877777777777777777777778888887777777765432 556677777777777
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 007461 235 GDSEKVAALFLECKSRKL 252 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~ 252 (603)
|++++|...|++....++
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 777777777777665443
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=2.9e-05 Score=63.04 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
.+...+..+...+...|++++|...|+......+.+..+|..+...+...|++++|+..+++..+.+.. +...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 345556666666666666666666666666665556666666666666666666666666666554322 4445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 007461 230 AYYKIGDSEKVAALFLECKS 249 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~ 249 (603)
++...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666665555443
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=8.4e-05 Score=61.09 Aligned_cols=97 Identities=11% Similarity=-0.039 Sum_probs=53.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007461 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD----KVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGI 544 (603)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 544 (603)
...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+..+++..+.... +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 444555555555555555555555555532 333 344555555566666666666666665554222 3445555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 007461 545 MVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 545 l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
+..++...|++++|.+.+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 566666666666666666666543
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=0.00017 Score=71.82 Aligned_cols=198 Identities=12% Similarity=-0.033 Sum_probs=106.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC--c-
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPD----------------AHTCSRLVASCVRARKFKIANTLLQVFITDGE--I- 184 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~- 184 (603)
.+.+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+..... .
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455667777777777777665431110 12355666777777777777777766554221 1
Q ss_pred ---chhhHHHHHhhhhhcCcHHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC
Q 007461 185 ---ALLAFNSAMGGYNKLHMYYSTILVYEKMKS----AGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECKSR--KLDS 254 (603)
Q Consensus 185 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~ 254 (603)
...+.+.+...+...|++++|..+++.... .+..+ -..++..+...|...|++++|..+++++... ....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 112334444455556677777776665543 22222 2335566777777777777777777665432 1222
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 255 TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK----GILED--PSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 255 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
.+....+|..++..|...|++++|..++++.... +..+. ...+..+...+...|+++.|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2223455666666677777777776666655421 11111 1233334444445555555555554443
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.0002 Score=71.33 Aligned_cols=165 Identities=6% Similarity=-0.098 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHhh
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQG-CIPGQV----TYASIINAYCRIALYSKAEKVFIEMQQK----GFDK-CVVA 436 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~ 436 (603)
+..+...|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+.+++..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555666666666666655544311 011111 1122222233456666666666655432 1111 1345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--CCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--HH
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMKAK--GCE--P-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERR--KVT-P-D--KV 505 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~-p-~--~~ 505 (603)
+..+...|...|++++|..++++.... +.. + ...+|..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566666666677777777766665432 111 1 1345666666677777777777766665321 111 1 1 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 506 SYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 506 ~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555566677777766665554
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=1.6e-05 Score=80.14 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHH
Q 007461 126 YLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYST 205 (603)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 205 (603)
.+.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|++++|+..+++..+..+.+..+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445566666666666665553 334555666666666666666666666666666555666666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH--HHHcCCHHHHHHHHH
Q 007461 206 ILVYEKMKSAGIVLDSGCYCQIMEA--YYKIGDSEKVAALFL 245 (603)
Q Consensus 206 ~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~ 245 (603)
++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665554221 23334444333 555566666666665
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.08 E-value=4.8e-05 Score=60.93 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcC----HhhHHHHHH
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF--DKC----VVAYSSMVA 442 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~li~ 442 (603)
.+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+... .++ ...+..+..
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 33344444444444444444443332 12333344444444444444444444444433210 011 334444444
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 007461 443 MYGKTGRIRDAMWLVAKMKA 462 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~ 462 (603)
.|.+.|++++|.+.|++..+
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 44445555555555544444
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=0.00012 Score=75.04 Aligned_cols=181 Identities=7% Similarity=-0.086 Sum_probs=140.3
Q ss_pred HHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 89 GMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKK----------WDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
++.+.+...+.|++.++.+.+.. +-+...|+..-..+.+.|+ +++++..++.+.+.+ +-+..+|..-
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34455666666999999998753 3455668887777777777 899999999998876 6678888888
Q ss_pred HHHHHccC--ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc-
Q 007461 159 VASCVRAR--KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH-MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI- 234 (603)
Q Consensus 159 l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~- 234 (603)
...+.+.+ +++++++.++++.+.++.+..+|+.-...+.+.| .++++++.++++++.++. |...|+.....+.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhc
Confidence 88888888 6699999999999999999999998888888888 888999999988887654 777888777776663
Q ss_pred -------------CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 235 -------------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 235 -------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
+.++++.+.+++....++. +..+|+.+...+.+.++.++
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~----~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS----CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCCC----CccHHHHHHHHHhcCCCccc
Confidence 4567888888777766543 23578877777777776444
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=9.8e-05 Score=59.08 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc---hhhHHHHHhh
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA---HTCSRLVASCVRARKFKIANTLLQVFITDGEIA---LLAFNSAMGG 195 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~ 195 (603)
.+...+...|++++|...|+.+.+.. +.+. ..+..+...+...|++++|...|+.+....+.+ ..++..+...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34555666666777776666666543 2222 355555566666666666666666666655544 4556666666
Q ss_pred hhhcCcHHHHHHHHHHHHhC
Q 007461 196 YNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~ 215 (603)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.01 E-value=7.5e-05 Score=74.85 Aligned_cols=121 Identities=10% Similarity=-0.025 Sum_probs=60.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD---------------AHTCSRLVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
..|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..++++....
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 356666667777777777777777766543 111 3444444444555555555555555555444
Q ss_pred CcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 007461 183 EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 240 (603)
+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.+++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555544443211 233444444444444444433
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=5.9e-05 Score=63.04 Aligned_cols=133 Identities=10% Similarity=0.065 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----H
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC-EPN----VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV-TPD----K 504 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~ 504 (603)
.++..+...+...|++++|...+++..+..- .++ ..++..+...+...|++++|...+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455555566666666666666665543200 011 13455566666666777777766666543210 011 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 505 VSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVI-DRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666777777777777777766532 1111 123456677777777888888777777654
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.98 E-value=2e-05 Score=79.36 Aligned_cols=119 Identities=8% Similarity=-0.030 Sum_probs=91.1
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 160 ASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
..+.+.|++++|.+.+++..+..+.+..+|..+..+|.+.|++++|++.+++..+.... +...+..+..+|.+.|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 34556788999999999988888888888999999999999999999999988886433 66788888888999999999
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHH--HhccCCHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDS--LGKSGRAFEALKFFR 283 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 283 (603)
|.+.|++..+..+... .++..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCT----THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999988877654332 356656555 778888888888887
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=4.5e-05 Score=63.74 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECKSRKL--DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 286 (603)
++..+...+...|++++|.+.+++...... ........++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344444455555555555555544332110 0000112334445555555555555555554443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=6.2e-05 Score=72.94 Aligned_cols=138 Identities=9% Similarity=0.000 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
..+..+...+.+.|++++|+..|++..+.- +.. ..... .+......+.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888888876521 000 00000 00111112223444555555555
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
+.|++++|+..+++.++.... +...+..+..+|...|++++|.+.|++..+..+. +...+..+...+...++.++
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~----~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE----DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555543221 3444555555555555555555555555444322 22345555555555555544
Q ss_pred HH
Q 007461 278 AL 279 (603)
Q Consensus 278 A~ 279 (603)
+.
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=0.0001 Score=61.87 Aligned_cols=99 Identities=7% Similarity=-0.068 Sum_probs=70.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIY--------N---------VLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
...+......+.+.|++++|+..|+..... . -+.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445677777888888888888888887764 1 01223566666677777777777777777777
Q ss_pred hcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 180 TDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
..++.+..+|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777664
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.92 E-value=0.00014 Score=58.22 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=50.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcch---hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHH
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIAL---LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD---SGCYCQIMEAY 231 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~ 231 (603)
+...+...|++++|...|+.+....+.+. .++..+...+...|++++|+..|++..+.... + ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 33445556666666666666665544433 45555555666666666666666655553211 1 33444555555
Q ss_pred HHcCCHHHHHHHHHHHHhCC
Q 007461 232 YKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~ 251 (603)
.+.|++++|...|+.+....
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 55555555555555555443
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.92 E-value=9.2e-05 Score=74.22 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc---------------hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIA---------------LLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
...+..+...+.+.|++++|...|++.....+.+ ..+|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4466667777778888888888888877755544 4566666666666666666666666666543
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHH
Q 007461 217 IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEAL 279 (603)
Q Consensus 217 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 279 (603)
.. +...|..+..+|...|++++|...|++..+.++.. ..++..+..++.+.++.+++.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~----~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN----KAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHH
Confidence 22 45556666666666666666666666665544322 235555555555555555544
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.89 E-value=2.1e-05 Score=62.01 Aligned_cols=84 Identities=11% Similarity=-0.124 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHH
Q 007461 131 KKWDSIVSLSEDFKIYN--VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILV 208 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 208 (603)
|++++|+..|++..+.+ -+.+..++..+...|...|++++|+..|++..+..|.+..++..+..++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555555554432 1222344444555555555555555555555555554555555555555555555555555
Q ss_pred HHHHHh
Q 007461 209 YEKMKS 214 (603)
Q Consensus 209 ~~~m~~ 214 (603)
|++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.88 E-value=0.00018 Score=58.95 Aligned_cols=97 Identities=9% Similarity=-0.063 Sum_probs=60.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHccCChHHHHHHHHHHHhc-----
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLP------DA-----HTCSRLVASCVRARKFKIANTLLQVFITD----- 181 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 181 (603)
..+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566677778888888888888877664210 12 25666666666666666666666666665
Q ss_pred --CCcchhhH----HHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 182 --GEIALLAF----NSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 182 --~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
+|.+..+| .....++...|++++|+..|++.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555 5555566666666666666555543
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=2.9e-05 Score=61.20 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007461 482 AKNLRQVEKLWKEMERRKV-TP-DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 559 (603)
.|++++|+..|++.++.+. .| +...+..+..+|...|++++|+..++++.+.... +...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4566666777776664321 12 2345666666677777777777777777665433 4556666677777777777777
Q ss_pred HHHHHHHhC
Q 007461 560 KLLQDMKSE 568 (603)
Q Consensus 560 ~~~~~m~~~ 568 (603)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.85 E-value=4.1e-05 Score=73.37 Aligned_cols=148 Identities=11% Similarity=0.016 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
..+..+...+.+.|++++|+..|+...... |+... +...++.+++...+ ...+|+.+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---------~~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---------HHHHHHHHHHHHH
Confidence 345566666677777777777777766543 33221 11112222222111 1135666666777
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH-HhccCCHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS-LGKSGRAF 276 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~ 276 (603)
+.|++++|+..+++.++... .+...|..+..+|...|++++|...|++.....+. +..++..+... ....+..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~----~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD----DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666432 25566667777777777777777777766554332 12345555544 33445566
Q ss_pred HHHHHHHHHHHC
Q 007461 277 EALKFFRDMKEK 288 (603)
Q Consensus 277 ~A~~~~~~m~~~ 288 (603)
++.++|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 666777776544
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=0.00015 Score=70.18 Aligned_cols=137 Identities=14% Similarity=0.034 Sum_probs=96.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
.+..+...+.+.|++++|+..|++.....+... .....+ ...+.. ..+..+|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~~-------~~~~~~-~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAEDA-------DGAKLQ-PVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCHH-------HHGGGH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccChH-------HHHHHH-HHHHHHHHHHHHHHHh
Confidence 355566677778888888887777664211000 000011 111110 1145688899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHH
Q 007461 234 IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKL 312 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 312 (603)
.|++++|++.+++..+.++. +..+|..+..+|...|++++|++.|++..+. .| +...+..+..++...++.++
T Consensus 286 ~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886543 4578999999999999999999999999886 44 56677777777777777776
Q ss_pred HHH
Q 007461 313 AEE 315 (603)
Q Consensus 313 a~~ 315 (603)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.82 E-value=0.001 Score=68.16 Aligned_cols=171 Identities=9% Similarity=-0.027 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 131 KKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK----------FKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
...++|++.++.+.+.+ +-+..+|+.--..+...|+ ++++.+.++.+.+..+.+..+|+.-.-.+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 34468899999998876 5566777777666666666 889999999999998999999998888888888
Q ss_pred --cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc-----
Q 007461 201 --MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG-DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS----- 272 (603)
Q Consensus 201 --~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 272 (603)
+++++++.++++.+.+.. |...|+.-..++.+.| .++++.+.++++.+.++. +..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~----n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS----NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC----CHHHHHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----CccHHHHHHHHHHhhccccc
Confidence 669999999999987655 7788888888888888 888888888887766543 456777776666553
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 007461 273 ---------GRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITE 309 (603)
Q Consensus 273 ---------g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 309 (603)
+.++++++.+++.... .| |...|.-.-..+.+.+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 4456777777666654 23 44555555555444443
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00014 Score=61.04 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+......+.+.|++++|+..|......-+. ........... ...+. +.+...|..+..+|.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~-----------~~~~~~~~~~~--~~~~~----~~~~~~~~nla~~~~ 74 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDT-----------LILREKPGEPE--WVELD----RKNIPLYANMSQCYL 74 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HHHTSCTTSHH--HHHHH----HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------hcccCCCCHHH--HHHHH----HHHHHHHHHHHHHHH
Confidence 45566667777888888888888877654000 00000000000 00000 012335555566666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
+.|++++|...++.....++. +..+|..+..+|...|++++|+..|++....
T Consensus 75 ~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 75 NIGDLHEAEETSSEVLKREET----NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 666666666666665554322 2345666666666666666666666666554
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=2.7e-05 Score=60.47 Aligned_cols=89 Identities=8% Similarity=-0.088 Sum_probs=48.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc------hhhHH
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA------LLAFN 190 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 190 (603)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.....+.+ ..++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4455555566666666666666666665553 3345555555566666666666666666665555443 33444
Q ss_pred HHHhhhhhcCcHHHHH
Q 007461 191 SAMGGYNKLHMYYSTI 206 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~ 206 (603)
.+..++...|+++.|+
T Consensus 83 ~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHhHhhhH
Confidence 4444444444444433
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.70 E-value=0.00037 Score=57.08 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=59.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
.+......+.+.|++++|+..|++..+..|..+.. ++... .+.+...|..+..++.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------~a~~~--------~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------EAFDH--------AGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------SCCCH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------hhhhh--------ccchHHHHHHHHHHHHH
Confidence 34445555666777777777777776655431110 00000 00011255555555666
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCCCccHHHH----HHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 234 IGDSEKVAALFLECKSR---KLDSTPFSTHMY----KILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
.|++++|+..+++..+. ....+|.+..+| .....++...|++++|+..|++.++
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666655555543 000011234566 7777777778888888887777754
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.68 E-value=0.00015 Score=69.37 Aligned_cols=147 Identities=12% Similarity=0.035 Sum_probs=67.3
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
+...-..+.+.++..+ |...|+.+.+. .|+... +...++.+++...+. ...|..+..+|
T Consensus 182 ~~~~g~~~~~~g~~~~-A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEE-AMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHTCSSSCCHH-HHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 4555566667788877 99999998864 344321 111222222222111 12455566666
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHHcCCHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA-YYKIGDSEKVA 241 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~ 241 (603)
.+.|++++|+..+++.....+.+..+|..+..+|...|++++|+..|++..+.... +...+..+... ....+..+.+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777766666666666777777777777777777777666554221 33344444433 22344556666
Q ss_pred HHHHHHHhCC
Q 007461 242 ALFLECKSRK 251 (603)
Q Consensus 242 ~~~~~~~~~~ 251 (603)
.+|..+....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 6666665443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.0015 Score=52.92 Aligned_cols=110 Identities=11% Similarity=0.030 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007461 449 RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCV 524 (603)
Q Consensus 449 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 524 (603)
++++|.+.|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555544 22222 4444444455555555555555543 44455555555555 45666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 007461 525 KFYNEFRMNGGVIDRAIAGIMVGVFSK----LSQIEELVKLLQDMKSEG 569 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 569 (603)
++|++..+.| ++..+..|...|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 34445555555555 556666666666665554
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=0.00014 Score=59.49 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=71.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK----------FKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
+.+.+++|++.++...+.+ +.+...|..+..++...++ +++|+..|++..+.+|....+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455667777777776665 5566666666666666554 4588888888888888888888888888887
Q ss_pred cC-----------cHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 199 LH-----------MYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 199 ~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
.| ++++|++.|++.++. .|+...|..-+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 64 788999999888874 566655554444
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00054 Score=53.42 Aligned_cols=80 Identities=5% Similarity=-0.110 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
|++.|+.+.+.. +.+...+..+...+...|++++|+..++...+.. +.+...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 667777777643 4466777888888888888888888888887765 4556777777778888888888888888776
Q ss_pred hcC
Q 007461 180 TDG 182 (603)
Q Consensus 180 ~~~ 182 (603)
...
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00023 Score=55.65 Aligned_cols=80 Identities=11% Similarity=-0.051 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
.|+..++...+.. +.+...+..+...+...|++++|+..|++.....+.+..+|..+...|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777776654 456777777888888888888888888888887777777888888888888888888888877765
Q ss_pred C
Q 007461 215 A 215 (603)
Q Consensus 215 ~ 215 (603)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.61 E-value=0.0024 Score=51.68 Aligned_cols=110 Identities=11% Similarity=0.021 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHH
Q 007461 414 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVE 489 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 489 (603)
+.++|.+.|++..+.| .+... |...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555554 22221 4444444455555555555555542 44455555555554 55666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007461 490 KLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 490 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 534 (603)
+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 44455555555555 566666666666666554
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00058 Score=50.35 Aligned_cols=80 Identities=9% Similarity=-0.045 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++.....+.+..++..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455566666666666666666666666554 334555666666666666666666666666665555555555555444
Q ss_pred h
Q 007461 197 N 197 (603)
Q Consensus 197 ~ 197 (603)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=4.3e-05 Score=59.25 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC-------hhh
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD-------SGC 223 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-------~~~ 223 (603)
+...+..+...+...|++++|...|++.....+.+..+|..+..++...|++++|+..+++..+.. |+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 455677777788888888888888888888877788888888888888888888888888887753 33 333
Q ss_pred HHHHHHHHHHcCCHHHHH
Q 007461 224 YCQIMEAYYKIGDSEKVA 241 (603)
Q Consensus 224 ~~~ll~~~~~~g~~~~a~ 241 (603)
+..+..++...|+.+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhHhhhH
Confidence 444444444444444443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.001 Score=48.94 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+...|++++|...+++.....+.+..++..+...+.+.|++++|+..|++..+.... +...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 3455555566666666666666666666665556666666666666666666666666666554221 334444444444
Q ss_pred H
Q 007461 232 Y 232 (603)
Q Consensus 232 ~ 232 (603)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.40 E-value=0.0013 Score=65.71 Aligned_cols=26 Identities=4% Similarity=-0.248 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
.+++.|...|...|++++|+.+|++.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444444444444443
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.38 E-value=0.00084 Score=67.16 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=50.1
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCCCC-ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHH
Q 007461 231 YYKIGDSEKVAALFLECKSR---KLDSTP-FSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-----GI-LED-PSIYAS 299 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~~ 299 (603)
+...|++++|+.++++.... -..++. ....+++.|...|...|++++|+.++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34567777777776655432 111221 12456666777777777777777766665421 11 121 234555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 007461 300 LICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 300 ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
|...|...|++++|..+++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666666666666666655543
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.25 E-value=0.0014 Score=49.52 Aligned_cols=64 Identities=14% Similarity=-0.049 Sum_probs=41.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT 180 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 180 (603)
+...+..+...+.+.|++++|+..|+...+.+ +.+..+|..+..+|...|++++|...|++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666677777777777666654 33455666666666666666666666666554
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.25 E-value=0.0011 Score=50.16 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
+.+...+..+...+...|++++|+..|++..+..+.+..+|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677788888888888888888888888888887888888888888888888888888887665
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.07 E-value=0.0019 Score=52.75 Aligned_cols=71 Identities=13% Similarity=0.031 Sum_probs=49.2
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH----------HHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY----------STILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
+.+.+++|++.++...+..|.+..+|+.+..++...++++ +|+..|++.++.+.. +..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 3456788888888888888888888888888888777654 666666666664322 44556666666655
Q ss_pred cC
Q 007461 234 IG 235 (603)
Q Consensus 234 ~g 235 (603)
.|
T Consensus 93 lg 94 (158)
T 1zu2_A 93 FA 94 (158)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.87 E-value=0.0036 Score=46.95 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAH-TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (603)
...+.+.|++++|+..++...+.. +.+.. .+..+..++...|++++|...|++.....+.+..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555666666666666665553 33444 555556666666666666666666665555444443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.77 E-value=0.063 Score=50.59 Aligned_cols=71 Identities=13% Similarity=-0.028 Sum_probs=40.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 220 DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297 (603)
Q Consensus 220 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 297 (603)
++.+|..+...+...|++++|...+++....+. +...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-----s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-----SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 455555555555555666666666666665541 2234555556666666666666666666554 3444444
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.53 E-value=0.034 Score=50.17 Aligned_cols=92 Identities=8% Similarity=0.037 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCH
Q 007461 275 AFEALKFFRDMKEKGILED---PSIYASLICSFASI-----TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE-GLV 345 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 345 (603)
...|..++++.++. .|+ ...|..+...|... |+.++|++.|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666664 444 45677777777773 88888888888888876433467777777777774 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHhhHH
Q 007461 346 EKTLDVVESMKNAKLK--ISDCISC 368 (603)
Q Consensus 346 ~~a~~~~~~~~~~~~~--~~~~~~~ 368 (603)
+++.+.+++....++. |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888877766 5543333
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.51 E-value=0.0055 Score=45.89 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchh-hHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALL-AFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
...+.+.|++++|...++++....+.+.. +|..+...|...|++++|++.|++..+.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34556677788888888887777776777 77777777777778888887777777653
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.46 E-value=0.084 Score=49.75 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 294 PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359 (603)
Q Consensus 294 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 359 (603)
..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344433333333445555555555444443 344444444444445555555555555444443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.44 E-value=0.014 Score=57.21 Aligned_cols=86 Identities=6% Similarity=0.016 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHH
Q 007461 482 AKNLRQVEKLWKEMERR---KVTPDK----VSYTTVISAYNRAREFDMCVKFYNEFRMN-----GG-VIDR-AIAGIMVG 547 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~---~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~ 547 (603)
.|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|+.++++.++- |. .|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777666665431 122332 35777777777777777777777766532 22 1332 35677777
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 007461 548 VFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 548 ~~~~~g~~~~A~~~~~~m~~ 567 (603)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77788888888777777654
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.39 E-value=0.053 Score=58.68 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=110.2
Q ss_pred HHHHHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 007461 371 VNGFSKRRGYWAAVK-VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449 (603)
Q Consensus 371 i~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (603)
.......+++++|.+ ++..+ ++......++..+.+.|..++|.++.+.-. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 344456788888877 55221 212334777888888999998887663211 11234566799
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
+++|.++.+.+ .+...|..+...+.+.|+++.|++.|.++. | |..+...|...|+.+...++.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~------d---~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH------D---LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT------C---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc------C---hhhhHHHHHHcCCHHHHHHHHHH
Confidence 99999886543 477899999999999999999999999885 2 33555556668888887777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 530 FRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 530 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
....|. ++.-..+|.+.|++++|++++.++.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 666542 3444556777899999999887763
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.34 E-value=0.045 Score=40.33 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 150 PDAHTCSRLVASCVRARK---FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
.+...+..+..++...++ .++|..++++....+|.++.+...+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 445555555555443332 4666666666666666666666666666666666666666666666543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.29 E-value=0.023 Score=55.81 Aligned_cols=90 Identities=8% Similarity=-0.090 Sum_probs=54.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC---CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHH
Q 007461 478 MHGRAKNLRQVEKLWKEMERRK---VTPDK----VSYTTVISAYNRAREFDMCVKFYNEFRMN-----GG-VIDR-AIAG 543 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~---~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~ 543 (603)
.+...|++++|+.++++..+.. +.|+. .+++.+..+|...|++++|+.+++++++- |. .|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666665321 22322 34677777777777777777777766532 21 1222 3566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 007461 544 IMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 544 ~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
.|...|...|++++|..++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777777777777777777776654
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.28 Score=40.59 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=56.8
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|+++.|.++.+.+ .+...|..|.......|+++-|..+|.+... +..+.-.|.-.|+.+...+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456666666555543 2455666666666666666666666655432 3344445555666666655
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
+-+....++- ++.....+.-.|++++++++|.+
T Consensus 82 la~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5554444432 55555666666777777776644
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.25 E-value=0.00068 Score=65.11 Aligned_cols=232 Identities=11% Similarity=0.108 Sum_probs=131.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
|..+|....+.+..++ ...++..+++. ..++.+=+.|+-+|++.++..+..+.+. .|+..-...+.+-|
T Consensus 86 y~eVi~~A~~~~~~ed-Lv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEE-LVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 154 (624)
T ss_dssp SSHHHHHTTTSSCCTT-HHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHH
T ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHH
Confidence 5556666555555554 44444444432 2233334455556666555444333221 24444445555555
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|.++.|.-+|. +..-|..|...+.+.|+++.|.+.-++ .-++.||..+-.+|...+++.-|.-
T Consensus 155 f~e~lYeAAKilys--------~isN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 155 YDEKMYDAAKLLYN--------NVSNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp HHSCCSTTSSTTGG--------GSCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred HHccCHHHHHHHHH--------hCccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHH
Confidence 55555555544443 333455666677777777777654332 2356689999999999998877755
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
.--.+.-..-. ...++..|-..|.+++-+.+++.-... -+.....|+-|.-.|++- ..++..+-++..-.
T Consensus 221 cGLniIvhade--------L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 221 CGLHIVVHADE--------LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp HHHHHHCCSSC--------CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred hcchhcccHHH--------HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 44333322211 334677888899999999988877632 133556677777667654 33433333332211
Q ss_pred c-CCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 007461 323 K-GMLR------DPEVCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 323 ~-~~~~------~~~~~~~l~~~~~~~g~~~~a~ 349 (603)
+ +++- ....|.-++-.|.+-.+++.|.
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 1 2211 2345667777777777777664
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.19 E-value=0.31 Score=37.82 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=23.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 464 (603)
.++.+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333344444444444444443221 13333344444444444444444444444444333
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.18 E-value=0.065 Score=57.97 Aligned_cols=132 Identities=11% Similarity=0.150 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
....++..+.+.|.++.|+++.++.. .-.......|++++|.++.+.+ .+...|..+...+.+
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHH
Confidence 34667777777888888776553211 1123345568888887775432 466788888888888
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.++++.|.++|.++.. |..+...|...|+.+...++-+.....+. ++.....|.+.|++++|
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---------~~~A~~~~~~~g~~~~a 755 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK---------FNLAFNAYWIAGDIQGA 755 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---------hHHHHHHHHHcCCHHHH
Confidence 8888888888887643 44555566667777766666555555432 55555566667777777
Q ss_pred HHHHHHH
Q 007461 279 LKFFRDM 285 (603)
Q Consensus 279 ~~~~~~m 285 (603)
+++|.++
T Consensus 756 ~~~~~~~ 762 (814)
T 3mkq_A 756 KDLLIKS 762 (814)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7766554
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.18 E-value=0.063 Score=39.48 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=48.7
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007461 114 RPEKSTLKLLIRYLVQSKK---WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI 184 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (603)
+.++..+..+..++...++ .++|..++++..+.+ +.+..+...+...+.+.|++++|+..|+.+....+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3566667777776654444 577777777777765 556667777777777777777777777777776554
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.13 E-value=0.029 Score=55.03 Aligned_cols=86 Identities=7% Similarity=-0.044 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAK---GCEPN----VWIYNSLMDMHGRAKNLRQVEKLWKEMERR-----K-VTPDK-VSYTTVIS 512 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~~-~~~~~li~ 512 (603)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777665442 12222 356677777777777777777777766431 2 12333 35888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007461 513 AYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 513 ~~~~~g~~~~a~~~~~~~~~ 532 (603)
.|...|++++|+.+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887754
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.93 E-value=0.071 Score=48.10 Aligned_cols=106 Identities=8% Similarity=0.081 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCH
Q 007461 485 LRQVEKLWKEMERRKVTPD---KVSYTTVISAYNR-----AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKL-SQI 555 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 555 (603)
...|...+++.++. .|+ ...|..+...|.+ .|+.++|.+.|++.++.+..-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666643 455 3456777777776 377777777777777754432355556667777663 777
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 556 EELVKLLQDMKSEGTK--LDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 556 ~~A~~~~~~m~~~g~~--~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+++.+.+++.+..... |+....+ .+..++|++++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHh
Confidence 7777777777776554 5433322 23345555555543
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.87 E-value=0.067 Score=52.54 Aligned_cols=90 Identities=7% Similarity=-0.002 Sum_probs=49.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CC-CHHHH
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKG---ILED----PSIYASLICSFASITEVKLAEELFKEAEEK-----GM-LR-DPEVC 332 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~ 332 (603)
..+.+.|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|..+++++++. |. .| ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445556666666666655321 1111 234556666666666666666666655532 21 11 13445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
+.|...|...|++++|..++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666667777777777777666654
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.3 Score=40.47 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=97.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007461 441 VAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF 520 (603)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 520 (603)
.....+.|+++.|.++.+++ .+...|..|.......|+++-|++.|.+.. | +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCH
Confidence 34456789999999998765 478899999999999999999999999875 3 33445556667888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 521 DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+...++-+.....|- ++.-...+.-.|+++++++++.+. |-.| ...-.....|..+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 887777776665531 445555677789999999999665 4322 2222345588899999998876
Q ss_pred c
Q 007461 601 E 601 (603)
Q Consensus 601 ~ 601 (603)
.
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 4
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.80 E-value=0.11 Score=41.89 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhcC-C-cchhhHHHHHhhhhhcCcHHHHHHHHHH
Q 007461 137 VSLSEDFKIYNVLPDAHTCSRLVASCVRAR---KFKIANTLLQVFITDG-E-IALLAFNSAMGGYNKLHMYYSTILVYEK 211 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (603)
.+-|++..+.+ +++..+.-.+..++++++ +.++++.+|+.+.+.+ | .....+-.+.-+|.+.|++++|++.++.
T Consensus 18 ~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 18 EKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333333 244444444555555554 3345555555555544 2 2344444455555555555555555555
Q ss_pred HHh
Q 007461 212 MKS 214 (603)
Q Consensus 212 m~~ 214 (603)
+++
T Consensus 97 lL~ 99 (152)
T 1pc2_A 97 LLQ 99 (152)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.097 Score=39.46 Aligned_cols=73 Identities=8% Similarity=-0.105 Sum_probs=44.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN------VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLA 188 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (603)
+...+..+...+.+.|++..|..+++...+.. ..+....+..+..++.+.|+++.|...++++....|.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 44555666777777777777777777665431 12334556666666666666666666666666655544443
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.59 E-value=3.1 Score=44.51 Aligned_cols=271 Identities=10% Similarity=-0.005 Sum_probs=135.3
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHhhHHHHHHHHH
Q 007461 305 ASITEVKLAEELFKEAEEKGMLRDP--EVCLKLVLMYIEEGLVEKTLDVVESMKNAKL-------KISDCISCAIVNGFS 375 (603)
Q Consensus 305 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~~~~ 375 (603)
...|+.+++..+++.....+-..+. ..-..+.-+...+|..+++.+++......+- .+....-.++.-+++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3556666666666554432101222 2333444556666666667776665443211 011111223333333
Q ss_pred hcCC-HHHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCH
Q 007461 376 KRRG-YWAAVKVYEQLISQGCIPGQVT--YA--SIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 450 (603)
Q Consensus 376 ~~~~-~~~a~~~~~~m~~~g~~p~~~~--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (603)
-.|. -+++.+.+..+.... +... .. .+...+...|+.+....++..+.+.. ..+..-...+.-++.-.|+.
T Consensus 465 ~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred hcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 3332 245566666655432 2211 11 22233445677777777777766542 22222223333334467888
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007461 451 RDAMWLVAKMKAKGCEPNVWIYN--SLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYN 528 (603)
Q Consensus 451 ~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 528 (603)
+.+..+++.+... -.|....-. ++.-+|+-.|+.....+++..+.+. ...+......+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887763 122222222 2334567778887777788888764 22233333333344555677777777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 529 EFRMNGGVIDRAIAGIMVGVFSKLSQI-EELVKLLQDMKSEGTKLDERLYHSAMNALR 585 (603)
Q Consensus 529 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~ 585 (603)
.+.+.+ .|....--.+.-+....|.. .+++.++..+... +|..+-...+-++.
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALS 672 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence 555532 23333223333344444432 6788888888642 45444444444443
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.44 E-value=0.14 Score=41.28 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 488 VEKLWKEMERRKVTPDKVSYTTVISAYNRAR---EFDMCVKFYNEFRMNGGVI--DRAIAGIMVGVFSKLSQIEELVKLL 562 (603)
Q Consensus 488 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 562 (603)
+++-|.+....+. ++..+...+..++++.+ +.++++.++++..+.+ .| ....+-.+.-++.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3334443333332 34444444444444444 3345555555554432 11 1122223333445555555555555
Q ss_pred HHHHh
Q 007461 563 QDMKS 567 (603)
Q Consensus 563 ~~m~~ 567 (603)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55553
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=2.3 Score=41.76 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=50.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC--Hhh
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEK--GMLRD---PEVCLKLVLMYIEEGLVEKTLDVVESMKN----AKLKIS--DCI 366 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 366 (603)
..|...+...|++.+|..++..+... +.... ...+..-++.|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555556666666666666665432 11111 23455556666677777777666666532 111111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLI 391 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~ 391 (603)
+..++..+...+++.+|-+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555666666777777766666554
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.07 E-value=0.25 Score=37.08 Aligned_cols=64 Identities=2% Similarity=-0.057 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNG------GVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.-+..+...+...|+++.|...++.+.+.. ..+...++..+..++.+.|++++|+..++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334455666666666666666666655431 1123445666666777777777777777766653
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.78 E-value=1.1 Score=34.86 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
.......++.....|+-++-.+++.++.. +.+|+....-.+..+|.+.|+..++.+++.++-++|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33445555566666666666666666433 33555666666666666666666666666666666543
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.76 E-value=0.37 Score=38.35 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=69.4
Q ss_pred CHhHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHCC
Q 007461 468 NVWIYNSLMDMHGRAKNL------RQVEKLWKEMERRKVTPDKV----SYTTVIS---AYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 468 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
|..+|-..+....+.|++ ++..++|++... .++|+.. .|-.+.- .+...+++++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555555555555555665 566666666654 2444421 1111111 1123378888888888887654
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 535 GVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 535 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
-+. ..+|-.....-.+.|++..|.+++.+.+..+.+ +...+...++-+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 344 667777777777889999999999888876644 345555555444
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.13 E-value=1.8 Score=34.54 Aligned_cols=54 Identities=7% Similarity=-0.032 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 254 (603)
+++++|.++|+.+++.+-.- ...|......-.+.|+++.|++++......++.|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665542222 4555555566666777777777777666655543
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.99 E-value=6.2e-05 Score=72.05 Aligned_cols=262 Identities=13% Similarity=0.125 Sum_probs=152.8
Q ss_pred chhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 82 KFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
.|..+-++....+...+ |++-| ++ .-|+..|..++....+.|.+++.+..+...++.. .++..=+.|+-+
T Consensus 56 VWs~LgkAqL~~~~v~e-AIdsy---Ik----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKE-AIDSY---IK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CSSSHHHHTTTSSSCTT-TTTSS---CC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred HHHHHHHHHHccCchHH-HHHHH---Hh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 37777777777766655 54433 11 2356677778888888888888777777665543 333444467777
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA 241 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 241 (603)
|++.+++.+..+.+ ..++..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++..|.
T Consensus 126 yAk~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 126 LAKTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HHTSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred HHhhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 77777655433221 12444445556666666666666665554332 2333444555566655554
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 242 ALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
+.-++ ..++.+|-.+..+|...+.+.-|.-+--.++-. || -...++..|.+.|.+++...+++...
T Consensus 191 daArK---------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 191 DGARK---------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp TTTTT---------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHh---------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 33211 112357999999999999888776665444422 11 23345666778899998888888776
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCC------CCHhhHHHHHHHHHhcCCHHHHH
Q 007461 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN-AKLK------ISDCISCAIVNGFSKRRGYWAAV 384 (603)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~~~~~li~~~~~~~~~~~a~ 384 (603)
... ......|+-|.-.|++- +.++..+.++..-. .+++ -....|.-++-.|.+-.++|.|.
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 322 45778888888888875 34444443332211 1221 01223666666666666666554
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.37 E-value=0.63 Score=35.99 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 226 QIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 226 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
.|.-++.+.|++++|++.++.+.+..
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34444555555555555555554443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.01 E-value=1.2 Score=34.47 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCC-cCHhhHHHHHHHHHccCCHHHHHHHHH
Q 007461 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK---AEKVFIEMQQKGFD-KCVVAYSSMVAMYGKTGRIRDAMWLVA 458 (603)
Q Consensus 383 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (603)
+.+-|......|. ++..+--.+..++.+..+... ++.+++.+.+.+.+ -.....-.|.-++.+.|++++|.+.++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333443333332 444444444445555444333 55555555544311 122333344445556666666666666
Q ss_pred HHHHc
Q 007461 459 KMKAK 463 (603)
Q Consensus 459 ~m~~~ 463 (603)
.+++.
T Consensus 99 ~lL~~ 103 (126)
T 1nzn_A 99 GLLQT 103 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65553
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.64 E-value=11 Score=36.95 Aligned_cols=255 Identities=11% Similarity=0.106 Sum_probs=141.9
Q ss_pred HHHHHHHHHh----hCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChHH
Q 007461 99 LAYDYYNEAK----KLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV----RARKFKI 170 (603)
Q Consensus 99 ~a~~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~ 170 (603)
.|++-+-.+. ...+..........++..|...|+|+...+.+..+.+..... ..+...+++.+. .....+.
T Consensus 34 ~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~~~d~ 112 (445)
T 4b4t_P 34 SALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSKSLDL 112 (445)
T ss_dssp HHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchhH
Confidence 3666553332 233445567778889999999999999988887766543222 222334443332 2332221
Q ss_pred --HHHHHHHHHhc--CCc-----chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHHcCC
Q 007461 171 --ANTLLQVFITD--GEI-----ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA--GIVLD---SGCYCQIMEAYYKIGD 236 (603)
Q Consensus 171 --a~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~g~ 236 (603)
-..+.+.+... +.. .......|...|...|++.+|..++..+... |.... ...+...++.|...++
T Consensus 113 ~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d 192 (445)
T 4b4t_P 113 NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD 192 (445)
T ss_dssp HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC
Confidence 12222221111 111 2234467788899999999999999987642 22111 3456777888999999
Q ss_pred HHHHHHHHHHHHhC---CCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHH-----HHHHHHcc
Q 007461 237 SEKVAALFLECKSR---KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-GILEDPSIYAS-----LICSFASI 307 (603)
Q Consensus 237 ~~~a~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~-----ll~~~~~~ 307 (603)
+..|..+++++... ...+...-...+...+..+...+++.+|.+.|.+.... ....|...+.. ++.... .
T Consensus 193 ~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL-a 271 (445)
T 4b4t_P 193 YSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL-S 271 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh-C
Confidence 99999999887532 11111112345677788888899999999888877542 11112222221 121111 1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 007461 308 TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE--GLVEKTLDVVESM 355 (603)
Q Consensus 308 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 355 (603)
+....-..++.........++...+..++.+|... .+++...+.|...
T Consensus 272 ~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 272 PYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp SCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred CCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 11111122222222222224566777777777654 3456665555543
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.54 E-value=1.1 Score=46.89 Aligned_cols=126 Identities=9% Similarity=-0.054 Sum_probs=75.9
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHh--------cCCcch-----
Q 007461 122 LLIRYLVQSKK-WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK-FKIANTLLQVFIT--------DGEIAL----- 186 (603)
Q Consensus 122 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~--------~~~~~~----- 186 (603)
.++..+.-.++ .+.|..+++++.+.....+......++..+...++ --+|.+++.+..+ ....+.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 57899999998877522222223334444333332 2234444444332 111111
Q ss_pred -----hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 187 -----LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 187 -----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
...+.=...+...|+++-|+++-++.+..- +-+-.+|..|..+|...|+++.|+-.++.++
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122233456677889999999988887753 2256789999999999999999998888875
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.51 E-value=1.1 Score=32.70 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
++.+-++.+-..++.|++....+.+++|.+-+++..|.++|+.+...-.....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 33444444444455555555555555555555555555555555544333333344443
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.25 E-value=0.92 Score=43.72 Aligned_cols=96 Identities=6% Similarity=-0.012 Sum_probs=45.0
Q ss_pred HHhHHHHHHHH---HhcCCHHHHHHHHHHHHhC--C-CCCCH------H------------HHHHHHHHHHccCChHHHH
Q 007461 117 KSTLKLLIRYL---VQSKKWDSIVSLSEDFKIY--N-VLPDA------H------------TCSRLVASCVRARKFKIAN 172 (603)
Q Consensus 117 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~-~~~~~------~------------~~~~ll~~~~~~~~~~~a~ 172 (603)
...|..++... ...|+.+.|...++++... | +-++. . +...++..+...|+++++.
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 33455544432 2357888888888777654 2 11111 0 1112222333444444444
Q ss_pred HHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHH
Q 007461 173 TLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKM 212 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (603)
..+..+....|.+...|-.+|.++.+.|+..+|++.|+..
T Consensus 192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444455555555555555554444443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.36 E-value=1.8 Score=41.58 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 007461 508 TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS-----EGTKLDERLYH 578 (603)
Q Consensus 508 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 578 (603)
..++.++...|++++++..++.+..... .+...|..++.++.+.|+..+|++.|++..+ .|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445555566666666666666655432 2555666666666666666666666665433 26666655433
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.80 E-value=2.5 Score=44.25 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 536 VIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g 588 (603)
+-...-|.+|.....|.+++++|.+.|+..+.. +.+...+..|++-|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 345566899999999999999999999999864 678899999999998876
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.73 E-value=5 Score=29.29 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 484 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
+.-+..+-++.+....+-|++....+.+++|.+.+++..|+++++-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45556666666666667777777777777777777777777777766654
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.12 E-value=36 Score=38.06 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 225 CQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 225 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
..++..+...+..+-+.++....... ...--.+..+|...|++++|.++|++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~~--------~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNSD--------PIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCCC--------HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccCC--------cHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555566667666666654432211 122334556677777777777777654
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.46 E-value=2.8 Score=32.41 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+-++.+...++.|++......+++|.+-+|+..|.++|+-+...-.....+|..++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33334444444555555555555555555555555555554443333333344333
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.28 E-value=36 Score=34.85 Aligned_cols=119 Identities=9% Similarity=0.038 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007461 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 315 (603)
+.+.|..++.................+..++..+...+...++...+....... ++.......+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 677777777776543322211112233444444455553445555665554432 333333444444456678888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
.+..+..... ....-.--+..++...|+.++|..+|..+..
T Consensus 307 ~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7776654221 1233333455566777888888887777654
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.76 E-value=9 Score=29.71 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 484 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
|.-+..+-++.+....+-|+.....+.+++|.+.+|+..|+++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455666666666677777777777788888888888888887777654
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.63 E-value=4.3 Score=36.07 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=67.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhhhcCc
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 201 (603)
..+.+.|++++++.....-++.. +.|...-..++..++-.|++++|.+-++.+.+..+. ....|-.+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH---
Confidence 34566778888888877777765 667777777888888888888888877777776552 23344444443211
Q ss_pred HHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 007461 202 YYSTILVYEKMKSAGIVL-----DSGCYCQIMEAYY--KIGDSEKVAALFLECKSR 250 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 250 (603)
=.++...+-.| ...-...++.+.. ..|+.++|.++-....+.
T Consensus 81 -------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 -------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111111111 1223334444443 347888777777666443
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.20 E-value=13 Score=41.50 Aligned_cols=84 Identities=13% Similarity=0.053 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDR----AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMN 582 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 582 (603)
|..++..+.+.|.++.+.++-+.+++....-+. ..|..+.+.....|++++|...+-.+.....+ ...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 556666666777777777776666554322122 14666677777777777777777666654332 455666666
Q ss_pred HHHhcCcHHH
Q 007461 583 ALRDAGLQMQ 592 (603)
Q Consensus 583 a~~~~g~~~~ 592 (603)
.++..|..+.
T Consensus 980 ~lce~~~~~~ 989 (1139)
T 4fhn_B 980 QLTKQGKINQ 989 (1139)
T ss_dssp HHHHHCCHHH
T ss_pred HHHhCCChhh
Confidence 6665555443
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.72 E-value=10 Score=30.79 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=65.8
Q ss_pred CCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 112 EFRPEKST--LKLLIRYLVQSKKWDSIVSLSEDFKIYN-VLPDA-------HTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 112 ~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
|+.|.... +-.-++.+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++.+|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 45555444 3345677888888998888888765442 12331 25556667778888888888888886543
Q ss_pred CC---cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 182 GE---IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD 253 (603)
Q Consensus 182 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (603)
.. .+..+...+. . ...... ......+...--.+..+|.+.+++++|+.+++.++.+...
T Consensus 93 ~k~l~k~~s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred HHHHhcCCCcccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 21 1111110010 0 000000 0011223344445677778888888888888776554433
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.13 E-value=30 Score=31.65 Aligned_cols=166 Identities=9% Similarity=-0.007 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHH
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK----VYEQLISQGCIPGQVTYASIIN 407 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~ 407 (603)
|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.+ +.+...+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3345555677777777776654321 22344455443333 4455556677777777777776
Q ss_pred HHHhcCChH-HHHHHHHHHHH----cC--CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 007461 408 AYCRIALYS-KAEKVFIEMQQ----KG--FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480 (603)
Q Consensus 408 ~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 480 (603)
.+.....-+ .=.++.+++.+ .| ..-++.....+...|.+.|++.+|...|-.-. .-|...+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHH
Confidence 665533211 12334444432 22 12367788889999999999999887764111 113445554444444
Q ss_pred hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 481 RA---KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 481 ~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.. |...++--+ .-..++ -|.-.|+...|..+++...
T Consensus 177 ~~~~~~~~~e~dlf--------------~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTVAEF--------------FSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHHHHH--------------HHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHH--------------HHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 33 433332211 112222 2445678888888887664
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.40 E-value=63 Score=34.78 Aligned_cols=313 Identities=7% Similarity=-0.038 Sum_probs=162.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHcCC--C-----CCHHHHHHHHH
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKGILEDPSI--YASLICSFASITEVKLAEELFKEAEEKGM--L-----RDPEVCLKLVL 337 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~ 337 (603)
-+....|+.++++.+++.....+-..+..+ -..+.-+....|...++..++...+...- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667788888877766554211123222 22333344556665667777777665421 0 11222223333
Q ss_pred HHHHcCC-HHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhc
Q 007461 338 MYIEEGL-VEKTLDVVESMKNAKLKISDCISC--AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN--AYCRI 412 (603)
Q Consensus 338 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~ 412 (603)
+++-.|. -+++.+.+..+...+-. ...... +|...+.-.|+.+....++..+.+. .+......+.- ++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence 3333343 23555555555543221 111122 2333344667777777777776653 23333333333 34477
Q ss_pred CChHHHHHHHHHHHHcCCCcCHhhHH--HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 007461 413 ALYSKAEKVFIEMQQKGFDKCVVAYS--SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490 (603)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 490 (603)
|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....++++.+.+. ...++.-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 89999999988887652 33332222 3344567788988888899988875 22334333333334555677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccC-------CHHHHHH
Q 007461 491 LWKEMERRKVTPDKVSYTTVISAYNRAREF-DMCVKFYNEFRMNGGVIDRAIAGIMVGVF--SKLS-------QIEELVK 560 (603)
Q Consensus 491 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g-------~~~~A~~ 560 (603)
++..+.+.+ .|....-..+.-+....|.. .++++++..+... +|..+-..-+.++ .-.| +....++
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 777666543 44444334444444445543 6788888888752 3444332222222 2223 3444444
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCc
Q 007461 561 LLQDMKSE-GTKLDERLYHSAMNALRDAGL 589 (603)
Q Consensus 561 ~~~~m~~~-g~~~~~~~~~~ll~a~~~~g~ 589 (603)
.+...... .-.++...-..+..+..+.|.
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 44444332 223334444455556665553
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.78 E-value=19 Score=27.91 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=47.0
Q ss_pred CCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcch
Q 007461 114 RPEKSTLKLLIRYLVQSKKW---DSIVSLSEDFKIYNVLPDA-HTCSRLVASCVRARKFKIANTLLQVFITDGEIAL 186 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (603)
.|++.+--...-+++++.+. ..++.+++++.+.+ +... ..+=.|.-++.+.|+++.|++..+.+.+..|.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 56777766667777776654 36777777777655 2133 3333444567778888888888888877766543
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.39 E-value=22 Score=27.65 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 007461 501 TPDKVSYTTVISAYNRARE---FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDER 575 (603)
Q Consensus 501 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 575 (603)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+--+.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4455554455555555543 445777777776654221233444556667777777777777777774 355543
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.07 E-value=17 Score=29.58 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=15.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 436 AYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
.---+..+|.+.|++++|+.+++.+.
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345556666666666666665543
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.02 E-value=17 Score=30.70 Aligned_cols=53 Identities=13% Similarity=0.042 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007461 485 LRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI 537 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 537 (603)
..++..+|..|...|+--.. .-|......+...|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555555443322 234444555555556666666665555554443
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.17 E-value=50 Score=30.22 Aligned_cols=166 Identities=14% Similarity=0.093 Sum_probs=84.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHH----HHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTIL----VYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +.+-..+.+++++......++..+.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45556667777777777655432 22344455444443 3444455667777766666666665
Q ss_pred HcCCHH-----HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007461 233 KIGDSE-----KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASI 307 (603)
Q Consensus 233 ~~g~~~-----~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 307 (603)
....-+ -..+...+-.+.+..+ .-+......+...|.+.|++.+|..-|- .|-.-|...+..++--+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~-~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYK-FGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCT-TCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHh
Confidence 533111 1112222222222211 1234667777888888888888777553 11111344555554444333
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 308 ---TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 308 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
|...++--. ....+-.|.-.|+...|..+|+...
T Consensus 179 ~~~~~~~e~dlf---------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAEF---------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHHH---------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHHH---------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 332222111 1122334556677777777777554
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.71 E-value=29 Score=27.32 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=51.8
Q ss_pred CCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCChHHHHHHHHHHHhcCCcchh
Q 007461 114 RPEKSTLKLLIRYLVQSKKW---DSIVSLSEDFKIYNVLPDAHTCSR-LVASCVRARKFKIANTLLQVFITDGEIALL 187 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 187 (603)
.|+..+--...-+++++.+. .+++.+++++.+.+ +.+..-|.. |.-++.+.|+++.|++..+.+.+..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 57777777777788887655 47888888887754 224444433 444688889999999998888887775533
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.36 E-value=20 Score=34.83 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQK--GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
+...+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555566666666666555543 222224445555555555555555555555543
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.05 E-value=36 Score=31.88 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 331 VCLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 331 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
....++.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34567777888888888888777764
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.29 E-value=58 Score=30.10 Aligned_cols=167 Identities=11% Similarity=0.054 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHH
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA----AVKVYEQLISQGCIPGQVTYASIIN 407 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~ 407 (603)
|.++..-|.+.+++++|.+++..- ...+.+.|+... +.-+++.+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445566678888888888775532 223444555444 3334455666778888887777777
Q ss_pred HHHhcCChH-HHHHHHHHHHH----cC--CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 007461 408 AYCRIALYS-KAEKVFIEMQQ----KG--FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480 (603)
Q Consensus 408 ~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 480 (603)
.+.....-+ .=..+.+++.+ .| ..-++.....+...|.+.+++.+|...|- . |-.+....|..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 776554321 11333444432 22 23456777888899999999999888772 2 22344456655554444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 481 RAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
..+...+ +|...-.+++ -|.-.+++..|..+++...+
T Consensus 179 ~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 4332111 1222222333 34456788888777666553
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.33 E-value=7.6 Score=34.48 Aligned_cols=55 Identities=9% Similarity=-0.147 Sum_probs=46.7
Q ss_pred HHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 161 SCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.+.+.|+++++++.+..-.+..|.|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4557788999998888888888888888899999999999999998888877764
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.75 E-value=75 Score=30.73 Aligned_cols=102 Identities=12% Similarity=-0.086 Sum_probs=59.1
Q ss_pred hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHH--H
Q 007461 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSAG--IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTH--M 261 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ 261 (603)
..++..+...|.+.|++++|.+.+.++...- ..--...+-.+++.+...+++..+...++++.........++.. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3466777788888888888888888776632 22223456667777777888888877777765322111111111 1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
...-+..+...+++.+|.+.|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 11112223446667777776666543
No 266
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=68.41 E-value=36 Score=32.87 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=10.6
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 007461 228 MEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~ 245 (603)
+...++.|+.+.+..+++
T Consensus 117 L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 117 LHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344556677766666554
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.56 E-value=46 Score=26.23 Aligned_cols=66 Identities=9% Similarity=-0.021 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 502 PDKVSYTTVISAYNRARE---FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 502 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....--+.-++.+.|++++|.+..+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444544432 334555555555533221222233344455566666666666666654
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.20 E-value=32 Score=27.46 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 007461 522 MCVKFYNEFRMNGGVID-RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE 574 (603)
Q Consensus 522 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 574 (603)
++.++|..|..+|+... ...|......+...|++++|.++++.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 37777777777766543 345677777777778888888888877777766643
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.27 E-value=85 Score=29.37 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITE--VKLAEELFKEAEEKGMLRDPEVCLK 334 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 334 (603)
..+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+...|+.+.......
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 3567778888888888888888888532111 12334444445544333 3456677777776665544443333
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.15 E-value=44 Score=27.12 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 007461 523 CVKFYNEFRMNGGVID-RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDER 575 (603)
Q Consensus 523 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 575 (603)
+.++|..|..+|+-.. ...|......+...|++++|.++|+.-++.+-.|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5566777776666543 3456666666667777777777777777766666443
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.07 E-value=31 Score=31.55 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567777888888888888777764
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.89 E-value=42 Score=24.43 Aligned_cols=50 Identities=8% Similarity=0.135 Sum_probs=21.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 374 FSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
+...|++++|..+.+.+. .||...+.++.. .+.|..+++..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344445555444433322 344444433322 24444444444444444444
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.55 E-value=44 Score=24.35 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 374 FSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
+...|++++|..+.+.+. .||...+.++.. .+.|..+++..-+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444455555554443322 344444443322 24444455444444444444
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=61.37 E-value=1.5e+02 Score=30.32 Aligned_cols=268 Identities=11% Similarity=0.052 Sum_probs=142.9
Q ss_pred HhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcch
Q 007461 107 AKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIAL 186 (603)
Q Consensus 107 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 186 (603)
+.+.++.+.....-+.-+..+.+.+++...+..+.. .+.+...-.....+....|+..+|....+.+=..+...+
T Consensus 62 l~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p 136 (618)
T 1qsa_A 62 VRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP 136 (618)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC
T ss_pred HHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc
Confidence 334444444444455667778888888877765542 234555555566677777887777777776666666666
Q ss_pred hhHHHHHhhhhhcCcHHH--HHHHHHHHHhCCC-----------CCChhh-HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 187 LAFNSAMGGYNKLHMYYS--TILVYEKMKSAGI-----------VLDSGC-YCQIMEAYYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~--a~~~~~~m~~~~~-----------~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
.....++..+.+.|.... ..+-++.+...|- .++... ...++..+. +...+...... .
T Consensus 137 ~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~ 208 (618)
T 1qsa_A 137 NACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----T 208 (618)
T ss_dssp THHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----S
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----c
Confidence 677777777776554332 2222333333221 111100 011111111 11111111110 1
Q ss_pred CCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 007461 253 DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASL----ICSFASITEVKLAEELFKEAEEKGMLRD 328 (603)
Q Consensus 253 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~ 328 (603)
.+++.+...+...+.-+.+. +.+.|...+....+.+ ..+......+ .......+...++...+...... ..+
T Consensus 209 ~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~ 284 (618)
T 1qsa_A 209 GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQS 284 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCC
T ss_pred CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCC
Confidence 11111111222223333333 7789999998886543 2233322222 22333445244555555554433 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
.....-.+....+.|+++.|...|..|...... ......-+..++...|+.++|..+|+.+..
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444555555666889999999999988764322 233344566778889999999999998864
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.87 E-value=69 Score=26.98 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD 503 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 503 (603)
++...++.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4557788999999988866543 45567777778888999999999999888877773
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.12 E-value=52 Score=24.02 Aligned_cols=78 Identities=8% Similarity=-0.006 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQ 563 (603)
Q Consensus 484 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 563 (603)
..++|..+-+-+...+- ....-.+=+..+...|++++|..+.+... .||...|-.|-. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45555555555544321 11111111223455666666666554432 456555544433 35566666665555
Q ss_pred HHHhCC
Q 007461 564 DMKSEG 569 (603)
Q Consensus 564 ~m~~~g 569 (603)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555544
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.79 E-value=41 Score=29.81 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=6.1
Q ss_pred HHHHHHHHHcCCCC
Q 007461 384 VKVYEQLISQGCIP 397 (603)
Q Consensus 384 ~~~~~~m~~~g~~p 397 (603)
.++++.+.+.|..+
T Consensus 199 ~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 199 EAITHLLLDHGADV 212 (285)
T ss_dssp HHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCC
Confidence 34444444444433
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.34 E-value=63 Score=28.11 Aligned_cols=89 Identities=16% Similarity=0.058 Sum_probs=44.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007461 265 LCDSLGKSGRAFEALKFFRDMKEK--GILE----DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLM 338 (603)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (603)
-++.+....++++|++++++..+. +.++ +.......+..-.....-..+..+.+++.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 345566666666666666655421 1121 111222223322222233334444444422 3455556666677
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 007461 339 YIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 339 ~~~~g~~~~a~~~~~~~~ 356 (603)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777788887777776554
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.38 E-value=92 Score=28.41 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITE--VKLAEELFKEAEEKGMLRDPEV 331 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~ 331 (603)
..+.++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+....++..+.+.|+.+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3567788888889999999999888532111 12333444444444333 4556677777777665544333
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.40 E-value=74 Score=27.22 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=10.8
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 007461 228 MEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~ 247 (603)
+...+..|+.+-+..+++..
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHcC
Confidence 33444566666655555543
No 281
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=52.11 E-value=65 Score=27.46 Aligned_cols=59 Identities=12% Similarity=-0.063 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 007461 227 IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI 290 (603)
Q Consensus 227 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 290 (603)
.+...+..|+.+-+..+++ .+..++..|..-+ +-+...+..|+.+-+..+++.+.+.|.
T Consensus 124 ~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 124 PLSFAACVGSEEIVRLLIE----HGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3444455666665555543 2332222111111 223334455666666666666666554
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.24 E-value=14 Score=32.74 Aligned_cols=117 Identities=10% Similarity=-0.074 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH--ccCChHHHHHHHHHHHhcCC-----------
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAH-------TCSRLVASCV--RARKFKIANTLLQVFITDGE----------- 183 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~----------- 183 (603)
+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-...+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 444566788887777777666655444422 2233333322 45777666666665432111
Q ss_pred cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhh----------------HHHHHHHHHHcCCHHHHHHHHH
Q 007461 184 IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGC----------------YCQIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----------------~~~ll~~~~~~g~~~~a~~~~~ 245 (603)
.+..-++.|.. .+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 89 ~d~~g~t~L~~-A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRGQTALHI-AIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEESBCHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCHHHH-HHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11122333333 33445544 3444455665555432 2244555667788776665554
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.17 E-value=33 Score=30.42 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=8.6
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 007461 123 LIRYLVQSKKWDSIVSLS 140 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~ 140 (603)
.+...+..|+.+-+..++
T Consensus 42 ~L~~A~~~g~~~~v~~Ll 59 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLL 59 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344455556654443333
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.81 E-value=86 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKI 145 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~ 145 (603)
--++.+....++++|..++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346778888889999888887654
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.31 E-value=2.4e+02 Score=28.95 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=44.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV-TPDKVSYTTVISAYNR- 516 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~- 516 (603)
....++.-.|+++.|.+++-.. ...+.+++...+.-|.-.+- -+.+..... .| ...+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcc-cccHHHHHHHHHHH
Confidence 3455666789999999988754 24455665555554433332 111211110 11 2347778888774
Q ss_pred --cCCHHHHHHHHHHH
Q 007461 517 --AREFDMCVKFYNEF 530 (603)
Q Consensus 517 --~g~~~~a~~~~~~~ 530 (603)
..+..+|+++|--+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 47888888887766
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.75 E-value=2e+02 Score=27.36 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CC---CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHhHHHHH-
Q 007461 404 SIINAYCRIALYSKAEKVFIEMQQK--GF---DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK--GCEPNVWIYNSL- 475 (603)
Q Consensus 404 ~ll~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l- 475 (603)
.++..|...|++.+|.+++..+.+. .. ..-..+|..-++.|...+++.++...+...... .+.+++.+-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4556666777777777777666543 10 111344555666677777777777777665432 122333322211
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHH
Q 007461 476 ---MDMHG-RAKNLRQVEKLWKEM 495 (603)
Q Consensus 476 ---i~~~~-~~g~~~~a~~~~~~m 495 (603)
...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 12234 567777777666655
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.73 E-value=69 Score=27.45 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=12.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 228 MEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
+...++.|+.+.+..+++.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334455566666666665544443
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.39 E-value=88 Score=24.07 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 007461 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRARE--FDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 472 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 536 (603)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 567888888899999999999988421111 12334455555555432 35667777777766544
No 289
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=45.35 E-value=86 Score=22.84 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=19.7
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 444 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 497 (603)
+...|++++|..+.+.+. .||...|.+|- -.+.|-.+++..-+.++..
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 334444444444433322 34444443332 2234444444444444433
No 290
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.96 E-value=72 Score=27.03 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 133 WDSIVSLSEDFKIYNVLPDAH-------TCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
++.|+.+|+.+.+....++.. .--..+..|.+.|.+++|.++|+++....+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP 145 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 477888888877654222211 112334557778888888888888766543
No 291
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=44.20 E-value=2.2e+02 Score=27.09 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=43.9
Q ss_pred CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTV 510 (603)
Q Consensus 431 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 510 (603)
.|....+..++.+| +.+++.+...+++..... +..|......+-..+. .--...+.++.+ +-...++..+
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~-----~Ir~~~L~~i~~---pYsrIsl~~i 322 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYD-----TMLEQNLCRIIE---PYSRVQVAHV 322 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHH-----HHHHHHHHHHHT---TCSEEEHHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHH-----HHHHHHHHHHhH---hhceeeHHHH
Confidence 45555666666665 356777666666654332 3445442111100000 000111112221 1233455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 511 ISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 511 i~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
...+.- ..++++..+-+|+..|
T Consensus 323 A~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 323 AESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHTC--CHHHHHHHHHHHHHTT
T ss_pred HHHHCc--CHHHHHHHHHHHHHCC
Confidence 555433 6778888888887665
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.24 E-value=2.1e+02 Score=28.35 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=42.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHH-HHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNV-LPDA--HTCS-RLVASCVRARKFKIANTLLQVFITDGEI 184 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (603)
...+|.+++.|...+.++.|..+..+..--.. .++. ..|. .+.+.+.-.+++.+|.+.|.......++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 34577788888888888888888887641100 1111 1222 2345566677888888887777665443
No 293
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.07 E-value=2e+02 Score=26.49 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCcCHhhHHHHHH
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKV----FIEMQQKGFDKCVVAYSSMVA 442 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~li~ 442 (603)
|.++..-|.+.+++++|++++..-- ..+.+.|+...|-++ .+-+.+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455666888999999998875522 123344555444443 455556678888888888888
Q ss_pred HHHccCCHH-HHHHHHHHHHH----cC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 443 MYGKTGRIR-DAMWLVAKMKA----KG--CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYN 515 (603)
Q Consensus 443 ~~~~~g~~~-~A~~~~~~m~~----~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 515 (603)
.+.....-+ .=..+++++.+ .| -.-|......+...|.+.+++.+|+..|- . |-.+....|..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 777655321 12333443332 22 12366677788888999999999888773 2 43333356655555444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 516 RAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 516 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+...++ |...-..++. |.-.++...|..+++...+
T Consensus 179 ~~~~~~e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHTA--------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGGH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCccH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 44332222 2222233333 4556788888777665543
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.60 E-value=1.3e+02 Score=24.01 Aligned_cols=50 Identities=6% Similarity=-0.000 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007461 488 VEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI 537 (603)
Q Consensus 488 a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 537 (603)
+..+|..|...|+--.. ..|......+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56666666666654333 235555566666677777777777766665554
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.15 E-value=56 Score=26.14 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=30.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCC
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITE--VKLAEELFKEAEEKGML 326 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~ 326 (603)
.+.++.-|...|+.++|.+.++++.... .-...+...+..++-+.++ .+.+..++..+...++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4455666666666666666666663210 0012223333334433222 34455555555555543
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.01 E-value=1.4e+02 Score=26.58 Aligned_cols=117 Identities=7% Similarity=-0.090 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPD---AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
.+...+..|+.+-+..+++ .|..++ ..-++. +...+..|+.+-+..+++.-......+...+.+.+...+..
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~ 139 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML 139 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Confidence 3444555666655444443 333332 111222 22333456665555444431111112222322333334444
Q ss_pred CcHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
|+.+ +.+.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-.
T Consensus 140 ~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 140 NDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp TCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 5443 333444444333 21133344555566777776666665533
No 297
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=38.06 E-value=48 Score=28.97 Aligned_cols=55 Identities=13% Similarity=0.028 Sum_probs=28.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHc--cCChHHHHHHHHHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDA-------HTCSRLVASCVR--ARKFKIANTLLQVF 178 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~~ 178 (603)
+...++.|+.+.+..+++.+.+.|..++. .-.+.|..++.. .|+.+-+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC
Confidence 44456677777666666666555543332 223333333322 26665555555543
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.82 E-value=1.8e+02 Score=24.37 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=40.2
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCc
Q 007461 369 AIVNGFS---KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL-----YSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 369 ~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~ 432 (603)
-+|+++. +-.+.+.|+-++.+|.+.| .|.-..-..++.+.-..|. ...|...++.....|.+-
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3455554 3567888888888888888 6666666666666665554 234455555556666443
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.39 E-value=1.4e+02 Score=22.94 Aligned_cols=65 Identities=11% Similarity=0.211 Sum_probs=41.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 007461 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN--LRQVEKLWKEMERRKVT 501 (603)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 501 (603)
....++.-|...|+.++|.+.++++..-.. ....+...+..++-+.++ .+.+.+++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456788889999999999999998862111 122334445555555432 35677777777766543
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=36.81 E-value=1.1e+02 Score=29.22 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=8.4
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 007461 228 MEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~ 245 (603)
+...++.|+.+-+.-+++
T Consensus 84 L~~A~~~g~~~~v~~Ll~ 101 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLE 101 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHh
Confidence 334445555554444443
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.66 E-value=1.7e+02 Score=23.58 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007461 488 VEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRA 540 (603)
Q Consensus 488 a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 540 (603)
+..+|..|...|+--.. ..|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 55566666666654333 235555555666677777777777776666555433
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.13 E-value=1.4e+02 Score=25.52 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 007461 521 DMCVKFYNEFRMNGGVID-RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKL 572 (603)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 572 (603)
+.+.++|..|..+|+... ...|......+...|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355566666666665533 2355666666666666666666666666665555
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=35.13 E-value=1.9e+02 Score=23.73 Aligned_cols=130 Identities=6% Similarity=-0.087 Sum_probs=56.9
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 007461 195 GYNKLHMYYSTILVYEKMKSAGIVLDSGC---YCQIMEAYYK-IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLG 270 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 270 (603)
..+..|+.+.-.++.+.+++.|..++... .+.|..++.. ..+.....++.+.+.+.+...+..|..-.+..+...+
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~ 123 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGG
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHH
Confidence 33445555555566666677776555322 2222222221 2233444555555666665554433332312222222
Q ss_pred ccCCH-HHHHHHHHHHHH-CCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 271 KSGRA-FEALKFFRDMKE-KGILEDPSIY--ASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 271 ~~g~~-~~A~~~~~~m~~-~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
..+.. ..-..+++.+.+ .|..++.... .+-+....+.|..+.+.-+.+...+.+
T Consensus 124 ~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp GCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred HcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 23322 334456666666 5655543211 122333344555554444444444333
No 304
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.95 E-value=2.3e+02 Score=26.52 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
....++.-|...||+++|.+.++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34566677777777777777777664
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.89 E-value=1.2e+02 Score=24.13 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDF 143 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~ 143 (603)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444445555555544444
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.61 E-value=50 Score=28.25 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=8.1
Q ss_pred HHHHHHcCCHHHHHHHH
Q 007461 228 MEAYYKIGDSEKVAALF 244 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~ 244 (603)
+...+..|+.+-+..++
T Consensus 113 l~~A~~~~~~~~~~~Ll 129 (240)
T 3eu9_A 113 IHLAAQFGHTSIVAYLI 129 (240)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHH
Confidence 33444556655444443
No 307
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.29 E-value=2.9e+02 Score=25.80 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 331 VCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 331 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
....++.-|...|++++|...++++..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 345677777888888888877777753
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.88 E-value=2.8e+02 Score=25.37 Aligned_cols=18 Identities=11% Similarity=-0.221 Sum_probs=12.9
Q ss_pred HccCCHHHHHHHHHHHHH
Q 007461 445 GKTGRIRDAMWLVAKMKA 462 (603)
Q Consensus 445 ~~~g~~~~A~~~~~~m~~ 462 (603)
...|++++|+..|+.++.
T Consensus 125 ~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 456788888887777654
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.93 E-value=1.4e+02 Score=21.54 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 235 GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
...+.|.++++.+..+|.. +|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~-------Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQ-------ALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTT-------HHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChH-------HHHHHHHHHHHcCcHHHH
Confidence 3567777777777776653 577777777665654443
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.77 E-value=54 Score=27.15 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCcHHHHHHHH
Q 007461 559 VKLLQDMKSEGTKLDERLY--HSAMNALRDAGLQMQAQWLQ 597 (603)
Q Consensus 559 ~~~~~~m~~~g~~~~~~~~--~~ll~a~~~~g~~~~a~~~~ 597 (603)
.++++.+.+.|..++.... .+.+......|..+-+..++
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 4455555555554443211 12233344455555544443
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.64 E-value=1.1e+02 Score=27.17 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=7.9
Q ss_pred HHHHHccCCHHHHHHHH
Q 007461 301 ICSFASITEVKLAEELF 317 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~ 317 (603)
+...+..|+.+-+..++
T Consensus 66 L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 66 LHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHTTSSSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444556655444333
No 312
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.62 E-value=1.3e+02 Score=24.70 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=29.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCC
Q 007461 227 IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK-SGRAFEALKFFRDMKEKGILED 293 (603)
Q Consensus 227 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~ 293 (603)
.+...+..|+.+.-.++.+.+.+.+..++..+..-++.|..++.. ..+.....++.+.+++.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 344444555555444555555555544443332222333222211 2233344555555666665544
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.47 E-value=1.5e+02 Score=23.52 Aligned_cols=55 Identities=7% Similarity=-0.089 Sum_probs=30.1
Q ss_pred CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
+...+.--..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 22 g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 22 GLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp C--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3333344444455555555566667777777666555555555555666665553
No 314
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=30.97 E-value=2.3e+02 Score=25.76 Aligned_cols=289 Identities=9% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSL 269 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 269 (603)
++.+...++.|+.+-...+++.=...+.. +...-.+-+...+..|+.+-+.-+++.-......... ....+...
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~-----~~~~~~~~ 99 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN-----GATPFILA 99 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----CCCHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccC-----CCchhHHH
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHH
Q 007461 270 GKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCL------------KLVL 337 (603)
Q Consensus 270 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~ 337 (603)
...+.......+...-...... |..-++.+..++.... .++.+.+.+.|..++..... +.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred HhcccchhhHHhhhccchhhhh-ccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCh
Q 007461 338 MYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYA--SIINAYCRIALY 415 (603)
Q Consensus 338 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~ 415 (603)
..++.|..+-+..++++....--..+..-.+.+...... +.......+.+.+.+.|..++..... +.+...+..|..
T Consensus 174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~ 252 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252 (337)
T ss_dssp HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 416 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 495 (603)
+.+..++..-...--..|..-.+.|..+..... .++.+.+++.|..+|..+ .+...++.|+.+ +.+.+
T Consensus 253 ~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~L 320 (337)
T 4g8k_A 253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVL 320 (337)
T ss_dssp HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHH
T ss_pred HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHH
Q ss_pred HhCCCCCC
Q 007461 496 ERRKVTPD 503 (603)
Q Consensus 496 ~~~~~~p~ 503 (603)
++.|-.||
T Consensus 321 l~~GA~~d 328 (337)
T 4g8k_A 321 LSHGAKED 328 (337)
T ss_dssp HHTTCCC-
T ss_pred HHCcCCCC
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.64 E-value=1.1e+02 Score=25.04 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=7.5
Q ss_pred HHHHcCCHHHHHHHH
Q 007461 230 AYYKIGDSEKVAALF 244 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~ 244 (603)
..+..|+.+-+..++
T Consensus 78 ~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 78 YAGAQGRTEILAYML 92 (201)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334455555554444
No 316
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=30.53 E-value=2e+02 Score=22.62 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=8.0
Q ss_pred HHHHHcCCHHHHHHHHH
Q 007461 229 EAYYKIGDSEKVAALFL 245 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~ 245 (603)
...+..|+.+-+.-+++
T Consensus 74 ~~A~~~~~~~~v~~Ll~ 90 (167)
T 3v31_A 74 SLACSKGYTDIVKMLLD 90 (167)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33444555554444443
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.09 E-value=2.6e+02 Score=23.79 Aligned_cols=63 Identities=8% Similarity=0.103 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--H-----HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 520 FDMCVKFYNEFRMNGGVIDRA--I-----AGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 520 ~~~a~~~~~~~~~~~~~~~~~--~-----~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
++.|+.+|+.+.+.-..++.. . -...+-.|.+.|.+++|.+++++.. +-.++..-...-+...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~--~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM--SKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence 467888888887654322222 1 1234446778888888888888876 4444445444444333
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.69 E-value=1.6e+02 Score=21.22 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 243 (603)
...++|.++++.+.+.|.. .|..++.++...|+..-|..+
T Consensus 51 t~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHHHHHH
Confidence 4677888888888887654 788888888766776655443
No 319
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.69 E-value=2.4e+02 Score=23.35 Aligned_cols=198 Identities=13% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007461 85 SFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVR 164 (603)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 164 (603)
.+..........++ +...+-...+ .++...-...+..+.+.|..+..-.+.+.+. .++...-...+.++.+
T Consensus 6 ~~~~~~~~~~~~~~-~~~~L~~~L~----~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 6 QFEKAAAPLRADPE-KVEMYIKNLQ----DDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQ 76 (211)
T ss_dssp ----------CCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSCHHHHHHHHHHHHH
T ss_pred ccchhhhHhhcCHh-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCccHHHHHHHHHc----CCCHHHHHHHHHHHHh
Q ss_pred cCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007461 165 ARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 244 (603)
.++.+....+.+.+ ..++..+-...+.++.+.+. .++...+..+.+. ++..+-...+.++.+.|+.+....+.
T Consensus 77 ~~~~~~~~~L~~~l---~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~L~ 149 (211)
T 3ltm_A 77 IGDERAVEPLIKAL---KDEDGWVRQSAAVALGQIGD-ERAVEPLIKALKD---EDWFVRIAAAFALGEIGDERAVEPLI 149 (211)
T ss_dssp HCCGGGHHHHHHHT---TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred hCCHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007461 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITE 309 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 309 (603)
+.+...+.. .-...+.++.+.+. .++...+..+.+ .++...-...+.++.+.+.
T Consensus 150 ~~l~d~~~~-------vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 150 KALKDEDGW-------VRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHTTCSSHH-------HHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC---
T ss_pred HHHcCCCHH-------HHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
No 320
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.69 E-value=2.5e+02 Score=23.52 Aligned_cols=19 Identities=26% Similarity=0.099 Sum_probs=10.9
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 007461 124 IRYLVQSKKWDSIVSLSED 142 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~ 142 (603)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445556666666666554
No 321
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=29.59 E-value=67 Score=28.39 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=11.9
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 007461 226 QIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 226 ~ll~~~~~~g~~~~a~~~~~ 245 (603)
+-+...+..|+.+-+..+++
T Consensus 150 tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 150 LPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp SHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHh
Confidence 34455566777766655554
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.52 E-value=1.3e+02 Score=25.65 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007461 124 IRYLVQSKKWDSIVSLS 140 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~ 140 (603)
+...+..|+.+-+..++
T Consensus 48 L~~A~~~~~~~~v~~Ll 64 (237)
T 3b7b_A 48 LMEAAENNHLEAVKYLI 64 (237)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 44445566655444333
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.17 E-value=1.7e+02 Score=22.88 Aligned_cols=46 Identities=4% Similarity=0.002 Sum_probs=24.3
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
..++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444445556666666665554445555555555555555
No 324
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.64 E-value=1.5e+02 Score=25.05 Aligned_cols=16 Identities=0% Similarity=-0.369 Sum_probs=7.5
Q ss_pred HHhcCChHHHHHHHHH
Q 007461 409 YCRIALYSKAEKVFIE 424 (603)
Q Consensus 409 ~~~~g~~~~a~~~~~~ 424 (603)
..+.|+.+-+..+++.
T Consensus 217 A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 217 AKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHh
Confidence 3444555544444443
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.97 E-value=1.6e+02 Score=23.15 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=27.4
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007461 355 MKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL 414 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 414 (603)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3344444332 2333444444444444555555555555444455555555555555443
No 326
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.94 E-value=85 Score=20.71 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIY 146 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~ 146 (603)
+..++...-.+.++-.++++.+.
T Consensus 9 l~l~Aed~AieDaiy~L~~aL~~ 31 (65)
T 2f6m_A 9 YNLVAQDYALTDTIEALSRMLHR 31 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333333333333333
No 327
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.77 E-value=79 Score=27.00 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=9.2
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007461 375 SKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~ 392 (603)
...++.+.++++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344555555555555543
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.62 E-value=1.6e+02 Score=23.29 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=33.3
Q ss_pred CCcchhhHHHHHhhhhhcC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 182 GEIALLAFNSAMGGYNKLH-MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
+...+.--..++..+...+ ..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 12 g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 12 GLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp TCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3333333344455555454 5666777777777776666666666666666666643
No 329
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.46 E-value=6.1e+02 Score=27.31 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=48.1
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHHc----CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 404 SIINAYCRIAL---YSKAEKVFIEMQQK----GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 404 ~ll~~~~~~g~---~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
.++...|..|. .+.|.+.|+..... .++|+.. ..+...-.+.|..++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 44555566665 34566666665442 1344432 22333334456655555566666543 2444445667
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 007461 477 DMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 477 ~~~~~~g~~~~a~~~~~~m~~ 497 (603)
.+++...+.....++++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 777777777776666666554
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.12 E-value=1.9e+02 Score=22.79 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 556 EELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588 (603)
Q Consensus 556 ~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g 588 (603)
-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 43 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 43 LSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp BCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444444433334444433344444433
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.80 E-value=1.6e+02 Score=22.77 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=27.0
Q ss_pred HHHHHhhhhhcC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 189 FNSAMGGYNKLH-MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 189 ~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 334444444444 455667777777666655565565555666665553
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.80 E-value=1.3e+02 Score=23.58 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=26.5
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 33444444444 45667777777666655566665556666666553
No 333
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.76 E-value=28 Score=30.60 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=10.6
Q ss_pred HHHHHhcCcHHHHHHHHhh
Q 007461 581 MNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 581 l~a~~~~g~~~~a~~~~~~ 599 (603)
+......|..+-+..++++
T Consensus 229 L~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3334455666666666554
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.66 E-value=96 Score=28.79 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 224 YCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 224 ~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
...++.-|...|+.++|.+.++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 344555555556666655555544
No 335
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.20 E-value=3e+02 Score=23.00 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007461 369 AIVNGFS---KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA 413 (603)
Q Consensus 369 ~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 413 (603)
-+|+++. +-.+.+.|+-++.+|++.|-.|....-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 35678888888888888887666666666666655544
No 336
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.12 E-value=4.7e+02 Score=25.23 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=24.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007461 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA 413 (603)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 413 (603)
+..+.+.|+.++.+|.+.|..|....-..+..+.-..|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34678888888888888776665555555555554444
No 337
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.79 E-value=1.5e+02 Score=23.35 Aligned_cols=58 Identities=3% Similarity=0.020 Sum_probs=30.0
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007461 355 MKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL 414 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 414 (603)
+.+.|.+++. .-..++..+...+ .-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 10 L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3444554433 2333444444444 44566666666665555555555555555555553
No 338
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.26 E-value=2.5e+02 Score=23.56 Aligned_cols=81 Identities=10% Similarity=-0.048 Sum_probs=35.5
Q ss_pred HHHHHccCChHHHHHHHHHHHhc-CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHHcC
Q 007461 159 VASCVRARKFKIANTLLQVFITD-GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGC--YCQIMEAYYKIG 235 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g 235 (603)
+...+..|+.+....+++.-... ...+...++.|. ..+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 34455667777777766653221 112222222222 233444443 3344445554443211 112333445556
Q ss_pred CHHHHHHHH
Q 007461 236 DSEKVAALF 244 (603)
Q Consensus 236 ~~~~a~~~~ 244 (603)
+.+-+..++
T Consensus 85 ~~~~v~~Ll 93 (231)
T 3aji_A 85 XDEIVKALL 93 (231)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665444444
No 339
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.48 E-value=1.9e+02 Score=22.29 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH
Q 007461 274 RAFEALKFFRDMKEKGILEDPSI 296 (603)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~ 296 (603)
..-.|.++++.+.+.+...+..|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aT 55 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLAT 55 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHH
Confidence 34444455555444433333333
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.42 E-value=2.1e+02 Score=24.00 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=9.9
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 007461 228 MEAYYKIGDSEKVAALFLE 246 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~ 246 (603)
+...+..|+.+-+..+++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344455666655555543
No 341
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.63 E-value=3.5e+02 Score=22.86 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 007461 367 SCAIVNGFSK---RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL-----YSKAEKVFIEMQQKGFD 431 (603)
Q Consensus 367 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 431 (603)
+.-+|+++.+ -.+.+.|+-++.+|.+.|-.|.-..-..++.+.-..|. ...|...++.....|.+
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3345555543 56788888888888888877766666666666655553 23455555555566643
No 342
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.60 E-value=4.4e+02 Score=24.04 Aligned_cols=48 Identities=10% Similarity=0.015 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
+...-+....+.+++..|..+-+++++.+..++ ..++|++++....+.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHHhcC
Confidence 456667778888999999999999988754322 234566666665544
No 343
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.59 E-value=1.3e+02 Score=23.47 Aligned_cols=49 Identities=8% Similarity=0.131 Sum_probs=34.3
Q ss_pred HHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 189 FNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455556666666777888888888877767777777777777777643
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.38 E-value=2.1e+02 Score=22.51 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=16.7
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007461 265 LCDSLGKSG-RAFEALKFFRDMKEKGILEDPSIYASLICSF 304 (603)
Q Consensus 265 li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (603)
++..+...+ ..-.|.++++.+.+.+...+..|.-.-|..+
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L 62 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQF 62 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 333333333 3444555555554444333433333333333
No 345
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.33 E-value=1.6e+02 Score=22.21 Aligned_cols=19 Identities=5% Similarity=0.207 Sum_probs=9.5
Q ss_pred HHccCChHHHHHHHHHHHh
Q 007461 162 CVRARKFKIANTLLQVFIT 180 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~ 180 (603)
+...++++.|..+...+..
T Consensus 71 al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3444555555555554443
No 346
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=21.82 E-value=2.3e+02 Score=20.42 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 238 EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
.+.+.+++........|.+.|+..+...+.-+...++.+.+..+++.+
T Consensus 12 ~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l 59 (97)
T 4fjo_A 12 SDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYM 59 (97)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 333444443333333444445555555555555555555555554444
No 347
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.59 E-value=6e+02 Score=25.13 Aligned_cols=68 Identities=10% Similarity=-0.003 Sum_probs=45.0
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC-CCCh--hhHH-HHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI-VLDS--GCYC-QIMEAYYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
....+|.+++.|...+.++.|..+..+..--.. .+|. .+|. .+...+.-.+++.+|.+.|.....+.+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 456788889999999999999988887642100 1111 1222 345666677888888888877765543
No 348
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.29 E-value=2.4e+02 Score=20.40 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007461 523 CVKFYNEFRMNGGVIDRAIAGIMVGVFSKLS 553 (603)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
+.++.+++..-|+.|+..+..-+++.|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444555555555555555444444
No 349
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.17 E-value=1.2e+02 Score=23.59 Aligned_cols=153 Identities=8% Similarity=-0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
....+...++.|+.+.+..+++. ....+......-...+.. +..|+.+-+..+++.-......+...++.+..+....
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYC--QIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
. .++++.+.+.|..++..... +.+...++.|+.+-+.-+++. ...+..... -..-+...+..|+.+-
T Consensus 80 ~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~-----g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 80 F-----LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDAR-----GLTPLELALQRGAQDL 148 (156)
T ss_dssp C-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTT-----SCCHHHHHHHSCCHHH
T ss_pred c-----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCC-----CCCHHHHHHHcCcHHH
Q ss_pred HHHHHHHH
Q 007461 278 ALKFFRDM 285 (603)
Q Consensus 278 A~~~~~~m 285 (603)
+.-+++.|
T Consensus 149 v~~Ll~~~ 156 (156)
T 1bd8_A 149 VDILQGHM 156 (156)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhC
No 350
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.77 E-value=3.3e+02 Score=21.87 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC--ChhhHHHHHH------HHHHcCCHHHHHHHHHHHHh
Q 007461 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL--DSGCYCQIME------AYYKIGDSEKVAALFLECKS 249 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~------~~~~~g~~~~a~~~~~~~~~ 249 (603)
..+|..-+..+.. |++-+|-++++..-.....+ +...|.-||. ...+.|+...|..++.+...
T Consensus 33 ~~~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 351
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.46 E-value=2.1e+02 Score=19.42 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
.-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3445555555555544444445555555555444
No 352
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.37 E-value=2e+02 Score=23.04 Aligned_cols=52 Identities=8% Similarity=0.023 Sum_probs=29.1
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCC
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA--GIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~ 236 (603)
.+.--..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 31 ~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 31 YTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp CCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3333444555555555566666667666665 444555555555566666553
No 353
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.22 E-value=7.1e+02 Score=25.53 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=25.8
Q ss_pred HHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 189 FNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
.-.+|-.|.|.|.+++|.++.++.... +.--...+...+..|+.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 446677788999999999988665432 11111355666666664
No 354
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.13 E-value=2.7e+02 Score=27.80 Aligned_cols=74 Identities=5% Similarity=-0.003 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
...........+++.+=.--+..-...++..|.+.|-.+.|.++++.+-.+-..... .+ .-+..|.++|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~----~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHN----II-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCcc----HH-HHHHHHHHcCChhhc
Confidence 344555666666655422224456677888899999999999999888776655432 34 666778888887654
Done!