Query 007462
Match_columns 603
No_of_seqs 402 out of 1904
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 23:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 2.2E-21 4.7E-26 195.6 16.9 120 32-155 1-120 (229)
2 COG2204 AtoC Response regulato 99.8 1.5E-19 3.2E-24 197.2 18.4 121 30-154 3-123 (464)
3 COG4753 Response regulator con 99.8 1.7E-19 3.7E-24 196.7 14.6 120 31-154 1-123 (475)
4 PF00072 Response_reg: Respons 99.8 7.3E-18 1.6E-22 146.9 15.9 111 34-148 1-112 (112)
5 COG4566 TtrR Response regulato 99.8 3.8E-18 8.3E-23 165.2 13.1 120 31-154 4-123 (202)
6 COG4565 CitB Response regulato 99.8 1E-17 2.2E-22 164.9 14.0 122 32-157 1-124 (224)
7 PF06203 CCT: CCT motif; Inte 99.7 5.1E-19 1.1E-23 133.9 2.5 44 541-584 1-44 (45)
8 COG3437 Response regulator con 99.7 2.3E-17 4.9E-22 173.1 13.0 119 31-151 14-133 (360)
9 COG0784 CheY FOG: CheY-like re 99.7 3E-16 6.6E-21 140.0 16.8 120 30-152 4-125 (130)
10 COG2197 CitB Response regulato 99.7 1.9E-16 4.2E-21 157.6 16.2 122 32-157 1-124 (211)
11 COG3706 PleD Response regulato 99.7 9.1E-17 2E-21 174.4 15.0 163 30-208 131-293 (435)
12 PLN03029 type-a response regul 99.7 7.6E-16 1.7E-20 154.0 16.7 123 31-153 8-148 (222)
13 PRK10161 transcriptional regul 99.7 1.3E-15 2.7E-20 148.8 17.7 122 30-153 1-122 (229)
14 PRK10046 dpiA two-component re 99.7 1.2E-15 2.7E-20 151.4 17.3 121 31-155 4-126 (225)
15 TIGR02154 PhoB phosphate regul 99.7 1.8E-15 4E-20 145.7 17.3 123 30-154 1-123 (226)
16 PRK10816 DNA-binding transcrip 99.7 2.3E-15 5E-20 146.4 17.3 119 32-154 1-119 (223)
17 PRK10529 DNA-binding transcrip 99.7 2.6E-15 5.7E-20 145.9 17.4 118 32-154 2-119 (225)
18 PRK10766 DNA-binding transcrip 99.7 2.6E-15 5.5E-20 145.6 17.3 120 30-154 1-120 (221)
19 PRK09836 DNA-binding transcrip 99.7 3.4E-15 7.5E-20 145.6 17.5 119 32-154 1-119 (227)
20 PRK10643 DNA-binding transcrip 99.7 4.6E-15 1E-19 142.8 17.5 119 32-154 1-119 (222)
21 PRK11173 two-component respons 99.6 5.4E-15 1.2E-19 145.9 17.2 118 32-154 4-121 (237)
22 PRK09468 ompR osmolarity respo 99.6 7.4E-15 1.6E-19 144.6 17.2 121 30-154 4-124 (239)
23 PRK10336 DNA-binding transcrip 99.6 8.8E-15 1.9E-19 140.9 17.1 119 32-154 1-119 (219)
24 PRK10430 DNA-binding transcrip 99.6 8.3E-15 1.8E-19 146.6 17.1 121 32-154 2-124 (239)
25 PRK10701 DNA-binding transcrip 99.6 1.2E-14 2.6E-19 143.4 17.4 118 32-154 2-119 (240)
26 PRK10955 DNA-binding transcrip 99.6 1.3E-14 2.8E-19 141.2 17.1 117 32-154 2-118 (232)
27 PRK11083 DNA-binding response 99.6 1.4E-14 3E-19 140.0 17.1 119 32-154 4-122 (228)
28 TIGR03787 marine_sort_RR prote 99.6 1.9E-14 4.1E-19 140.1 17.4 118 33-154 2-121 (227)
29 PRK13856 two-component respons 99.6 1.7E-14 3.7E-19 143.1 17.3 118 32-154 2-120 (241)
30 PRK11517 transcriptional regul 99.6 2.3E-14 5E-19 138.6 17.2 118 32-154 1-118 (223)
31 KOG0519 Sensory transduction h 99.6 4E-15 8.7E-20 173.5 14.0 119 31-151 666-784 (786)
32 PRK11107 hybrid sensory histid 99.6 9.1E-15 2E-19 171.2 17.0 122 31-154 667-788 (919)
33 CHL00148 orf27 Ycf27; Reviewed 99.6 3E-14 6.6E-19 139.3 17.5 119 31-154 6-124 (240)
34 PRK10841 hybrid sensory kinase 99.6 1.7E-14 3.6E-19 171.3 17.8 120 31-154 801-920 (924)
35 TIGR02875 spore_0_A sporulatio 99.6 3.2E-14 6.9E-19 143.8 17.0 121 31-153 2-124 (262)
36 PRK15347 two component system 99.6 2.1E-14 4.6E-19 168.4 17.4 121 31-153 690-812 (921)
37 PRK09958 DNA-binding transcrip 99.6 4.7E-14 1E-18 134.9 16.7 119 32-154 1-120 (204)
38 TIGR01387 cztR_silR_copR heavy 99.6 5.3E-14 1.2E-18 135.0 16.6 117 34-154 1-117 (218)
39 PRK09483 response regulator; P 99.6 5.6E-14 1.2E-18 135.6 16.8 119 32-154 2-122 (217)
40 PRK09581 pleD response regulat 99.6 1.3E-14 2.9E-19 155.1 13.2 119 31-152 155-273 (457)
41 COG3947 Response regulator con 99.6 7.7E-15 1.7E-19 150.2 10.7 117 32-154 1-117 (361)
42 COG4567 Response regulator con 99.6 3.4E-14 7.3E-19 133.4 13.9 115 32-150 10-124 (182)
43 PRK10840 transcriptional regul 99.6 5.8E-14 1.3E-18 137.9 16.3 119 32-154 4-127 (216)
44 PRK15115 response regulator Gl 99.6 5.3E-14 1.2E-18 153.2 16.2 121 29-153 3-123 (444)
45 PRK10365 transcriptional regul 99.6 5.1E-14 1.1E-18 152.7 15.5 119 31-153 5-123 (441)
46 PRK14084 two-component respons 99.6 1.1E-13 2.4E-18 138.0 16.7 117 32-154 1-119 (246)
47 TIGR02956 TMAO_torS TMAO reduc 99.5 6.3E-14 1.4E-18 165.4 17.2 121 31-153 702-823 (968)
48 PRK11466 hybrid sensory histid 99.5 6.7E-14 1.5E-18 164.5 16.6 121 31-154 681-801 (914)
49 PRK10360 DNA-binding transcrip 99.5 2.3E-13 4.9E-18 129.3 16.2 115 32-153 2-118 (196)
50 PRK10923 glnG nitrogen regulat 99.5 1.7E-13 3.7E-18 150.4 17.5 118 32-153 4-121 (469)
51 PRK09935 transcriptional regul 99.5 3.5E-13 7.6E-18 128.6 16.8 120 31-154 3-124 (210)
52 PRK11091 aerobic respiration c 99.5 1.4E-13 3.1E-18 159.7 16.8 121 31-154 525-646 (779)
53 PRK11361 acetoacetate metaboli 99.5 2E-13 4.3E-18 149.0 16.8 119 31-153 4-122 (457)
54 PRK15479 transcriptional regul 99.5 4.4E-13 9.5E-18 128.9 17.3 119 32-154 1-119 (221)
55 PRK11697 putative two-componen 99.5 2.5E-13 5.5E-18 134.3 15.9 115 32-153 2-118 (238)
56 PRK09581 pleD response regulat 99.5 3.2E-13 7E-18 144.4 17.8 122 30-153 1-122 (457)
57 TIGR02915 PEP_resp_reg putativ 99.5 2.2E-13 4.7E-18 148.5 15.9 114 34-153 1-119 (445)
58 PRK10610 chemotaxis regulatory 99.5 1.3E-12 2.8E-17 111.8 17.3 121 31-153 5-126 (129)
59 TIGR01818 ntrC nitrogen regula 99.5 3.7E-13 8E-18 147.3 16.3 116 34-153 1-116 (463)
60 PRK10710 DNA-binding transcrip 99.5 8.5E-13 1.8E-17 129.1 17.1 118 32-154 11-128 (240)
61 PRK09959 hybrid sensory histid 99.5 3.4E-13 7.4E-18 163.2 17.0 119 31-153 958-1076(1197)
62 PRK12555 chemotaxis-specific m 99.5 4.9E-13 1.1E-17 141.2 16.2 115 32-151 1-128 (337)
63 PRK13435 response regulator; P 99.5 1.5E-12 3.2E-17 119.4 15.3 119 30-156 4-124 (145)
64 PRK09390 fixJ response regulat 99.5 1.2E-12 2.5E-17 122.9 14.8 119 32-154 4-122 (202)
65 PRK10403 transcriptional regul 99.4 2.5E-12 5.4E-17 122.4 16.2 120 30-153 5-126 (215)
66 PRK00742 chemotaxis-specific m 99.4 2E-12 4.3E-17 137.4 16.5 105 30-139 2-110 (354)
67 PRK15369 two component system 99.4 5.7E-12 1.2E-16 118.8 16.6 119 31-153 3-123 (211)
68 COG2201 CheB Chemotaxis respon 99.4 1.5E-12 3.2E-17 138.1 13.0 104 31-139 1-108 (350)
69 PRK13558 bacterio-opsin activa 99.4 2.2E-12 4.7E-17 147.2 14.8 119 31-153 7-127 (665)
70 PRK10651 transcriptional regul 99.4 8.3E-12 1.8E-16 119.1 16.3 120 31-154 6-127 (216)
71 PRK10100 DNA-binding transcrip 99.4 4.6E-12 1E-16 126.9 14.1 117 31-156 10-130 (216)
72 PRK11475 DNA-binding transcrip 99.4 8.2E-12 1.8E-16 124.3 13.9 108 44-155 3-117 (207)
73 PRK09191 two-component respons 99.4 1.9E-11 4.1E-16 122.6 16.6 119 29-154 135-255 (261)
74 PRK15411 rcsA colanic acid cap 99.3 2.7E-11 5.8E-16 120.3 15.9 120 32-156 1-126 (207)
75 COG3707 AmiR Response regulato 99.3 1.7E-11 3.7E-16 119.7 11.9 121 29-154 3-124 (194)
76 PRK13837 two-component VirA-li 99.3 5.4E-11 1.2E-15 139.8 16.8 118 32-154 698-815 (828)
77 cd00156 REC Signal receiver do 99.3 1E-10 2.2E-15 95.1 13.5 112 35-150 1-112 (113)
78 PRK13557 histidine kinase; Pro 99.2 3.2E-10 7E-15 124.0 15.7 120 31-153 415-535 (540)
79 PRK10693 response regulator of 99.2 2.7E-10 5.9E-15 119.2 12.8 91 60-154 2-93 (303)
80 COG3279 LytT Response regulato 99.0 2.3E-09 5E-14 109.4 11.3 117 31-153 1-119 (244)
81 PRK15029 arginine decarboxylas 99.0 3.8E-09 8.3E-14 122.6 14.1 118 33-154 2-134 (755)
82 PRK11107 hybrid sensory histid 98.4 3.7E-06 8E-11 99.1 14.5 115 31-151 536-650 (919)
83 COG3706 PleD Response regulato 98.1 2.9E-06 6.2E-11 93.2 5.2 92 56-153 13-104 (435)
84 PF06490 FleQ: Flagellar regul 97.9 7.5E-05 1.6E-09 67.4 9.8 107 33-150 1-107 (109)
85 smart00448 REC cheY-homologous 97.7 0.00035 7.6E-09 49.0 8.0 55 32-88 1-55 (55)
86 cd02071 MM_CoA_mut_B12_BD meth 96.3 0.1 2.3E-06 47.7 13.5 112 33-148 1-121 (122)
87 PRK02261 methylaspartate mutas 96.0 0.29 6.2E-06 46.1 14.8 117 32-152 4-135 (137)
88 PF03709 OKR_DC_1_N: Orn/Lys/A 95.8 0.093 2E-06 47.7 10.3 104 44-151 6-112 (115)
89 PRK10618 phosphotransfer inter 95.4 0.016 3.5E-07 69.7 4.8 49 31-87 689-737 (894)
90 cd02067 B12-binding B12 bindin 95.2 0.27 5.9E-06 44.2 11.2 93 38-135 10-108 (119)
91 TIGR00640 acid_CoA_mut_C methy 94.9 0.72 1.6E-05 43.2 13.4 110 38-151 13-127 (132)
92 KOG1601 GATA-4/5/6 transcripti 94.7 0.013 2.9E-07 58.5 1.4 108 35-144 19-130 (340)
93 PF09425 CCT_2: Divergent CCT 94.7 0.017 3.8E-07 39.6 1.4 26 538-564 1-26 (27)
94 PRK15399 lysine decarboxylase 93.7 0.56 1.2E-05 55.3 11.9 117 32-154 1-124 (713)
95 TIGR03815 CpaE_hom_Actino heli 93.5 0.31 6.8E-06 51.5 8.9 85 55-151 1-86 (322)
96 PRK15400 lysine decarboxylase 92.9 0.82 1.8E-05 54.0 11.8 117 32-154 1-124 (714)
97 TIGR01501 MthylAspMutase methy 92.4 3.8 8.1E-05 38.7 13.3 108 40-151 14-132 (134)
98 cd02070 corrinoid_protein_B12- 92.2 1.9 4.1E-05 42.9 11.8 100 31-135 82-190 (201)
99 cd04728 ThiG Thiazole synthase 91.3 1.7 3.6E-05 45.1 10.4 109 32-151 94-224 (248)
100 PRK00208 thiG thiazole synthas 90.6 1.3 2.9E-05 45.8 9.0 109 32-151 94-224 (250)
101 cd02069 methionine_synthase_B1 89.7 3.2 7E-05 41.9 10.8 103 31-137 88-202 (213)
102 TIGR02370 pyl_corrinoid methyl 88.3 4 8.7E-05 40.5 10.3 99 32-135 85-192 (197)
103 cd02072 Glm_B12_BD B12 binding 88.3 13 0.00028 34.9 12.9 105 40-148 12-127 (128)
104 PRK11572 copper homeostasis pr 87.7 4.8 0.0001 41.8 10.6 117 2-134 63-196 (248)
105 PRK00043 thiE thiamine-phospha 87.2 13 0.00029 36.3 13.2 69 61-135 111-187 (212)
106 PF02310 B12-binding: B12 bind 87.1 5.9 0.00013 35.2 9.7 92 40-136 13-111 (121)
107 PF01408 GFO_IDH_MocA: Oxidore 86.0 12 0.00026 33.0 11.1 107 32-153 1-112 (120)
108 PF03602 Cons_hypoth95: Conser 85.5 6.4 0.00014 38.7 9.9 92 19-113 54-151 (183)
109 PRK01130 N-acetylmannosamine-6 85.1 12 0.00026 37.4 11.9 85 46-136 109-202 (221)
110 COG4999 Uncharacterized domain 85.0 3.8 8.3E-05 38.2 7.3 107 32-147 12-121 (140)
111 COG0512 PabA Anthranilate/para 84.8 3 6.5E-05 41.6 7.1 76 32-114 2-81 (191)
112 PF10087 DUF2325: Uncharacteri 84.7 7.7 0.00017 34.0 9.0 87 33-126 1-93 (97)
113 PRK00278 trpC indole-3-glycero 83.1 29 0.00064 36.0 14.0 91 41-136 146-240 (260)
114 COG2185 Sbm Methylmalonyl-CoA 82.9 24 0.00052 33.8 12.0 116 31-150 12-136 (143)
115 CHL00162 thiG thiamin biosynth 82.1 32 0.0007 36.0 13.5 98 48-152 130-239 (267)
116 PRK09426 methylmalonyl-CoA mut 82.0 17 0.00037 43.3 13.0 116 32-151 583-707 (714)
117 cd02068 radical_SAM_B12_BD B12 81.9 14 0.0003 33.6 9.9 106 42-151 3-111 (127)
118 PF05690 ThiG: Thiazole biosyn 81.5 13 0.00029 38.4 10.4 112 32-150 94-223 (247)
119 COG3142 CutC Uncharacterized p 80.9 12 0.00027 38.5 9.8 119 2-135 63-199 (241)
120 PF03932 CutC: CutC family; I 80.6 6.6 0.00014 39.6 7.8 118 2-134 62-197 (201)
121 PRK12704 phosphodiesterase; Pr 80.1 3 6.6E-05 47.6 5.9 44 109-152 251-296 (520)
122 cd04729 NanE N-acetylmannosami 80.0 29 0.00063 34.6 12.4 87 43-136 111-206 (219)
123 PRK03958 tRNA 2'-O-methylase; 79.5 16 0.00034 36.2 9.8 65 32-98 32-98 (176)
124 TIGR02311 HpaI 2,4-dihydroxyhe 79.0 24 0.00053 36.4 11.7 101 47-150 3-106 (249)
125 PF02254 TrkA_N: TrkA-N domain 78.9 32 0.0007 30.1 11.0 95 29-134 19-114 (116)
126 TIGR02026 BchE magnesium-proto 78.6 23 0.0005 40.1 12.3 107 40-151 21-136 (497)
127 PRK08385 nicotinate-nucleotide 77.8 24 0.00051 37.4 11.2 97 33-135 156-258 (278)
128 TIGR00007 phosphoribosylformim 77.6 35 0.00077 34.1 12.2 68 63-135 146-217 (230)
129 cd04962 GT1_like_5 This family 75.7 27 0.00058 36.3 11.1 115 23-152 219-335 (371)
130 COG2022 ThiG Uncharacterized e 75.4 25 0.00054 36.4 10.1 98 32-136 101-211 (262)
131 TIGR00095 RNA methyltransferas 74.8 45 0.00098 32.8 11.8 87 29-115 70-159 (189)
132 TIGR03239 GarL 2-dehydro-3-deo 74.2 33 0.00072 35.5 11.1 100 47-149 3-105 (249)
133 TIGR03151 enACPred_II putative 74.2 32 0.0007 36.6 11.3 84 47-136 101-190 (307)
134 PRK10558 alpha-dehydro-beta-de 74.1 30 0.00065 36.0 10.7 102 46-150 9-113 (256)
135 PRK10128 2-keto-3-deoxy-L-rham 73.9 37 0.0008 35.7 11.4 102 46-150 8-112 (267)
136 cd04730 NPD_like 2-Nitropropan 73.7 60 0.0013 32.4 12.6 98 31-136 80-185 (236)
137 cd02065 B12-binding_like B12 b 73.5 21 0.00045 31.7 8.4 73 38-114 10-87 (125)
138 PRK12724 flagellar biosynthesi 73.5 41 0.00089 37.8 12.2 104 29-136 250-367 (432)
139 PRK11840 bifunctional sulfur c 73.4 20 0.00044 38.7 9.4 113 32-151 168-298 (326)
140 PRK13125 trpA tryptophan synth 71.8 51 0.0011 33.8 11.7 89 43-136 117-214 (244)
141 PLN02871 UDP-sulfoquinovose:DA 71.1 43 0.00092 37.1 11.9 107 31-152 290-399 (465)
142 KOG4175 Tryptophan synthase al 70.9 17 0.00038 36.8 7.7 59 93-153 83-147 (268)
143 cd04724 Tryptophan_synthase_al 70.9 42 0.0009 34.4 10.9 59 91-152 63-127 (242)
144 TIGR00693 thiE thiamine-phosph 70.8 33 0.00071 33.3 9.7 70 60-135 102-179 (196)
145 TIGR00566 trpG_papA glutamine 70.7 13 0.00028 36.5 6.8 73 34-114 2-79 (188)
146 PRK05749 3-deoxy-D-manno-octul 70.6 46 0.00099 36.2 11.8 110 31-152 262-387 (425)
147 cd04726 KGPDC_HPS 3-Keto-L-gul 70.5 77 0.0017 30.8 12.3 105 25-136 71-186 (202)
148 cd03114 ArgK-like The function 70.2 19 0.00042 34.0 7.7 85 23-116 19-123 (148)
149 cd00452 KDPG_aldolase KDPG and 69.7 38 0.00083 33.2 9.9 77 52-136 94-171 (190)
150 PRK05458 guanosine 5'-monophos 69.0 79 0.0017 34.3 12.8 98 33-136 113-230 (326)
151 PRK07649 para-aminobenzoate/an 68.9 6 0.00013 39.2 4.1 49 34-84 2-50 (195)
152 cd00564 TMP_TenI Thiamine mono 68.7 45 0.00097 31.7 10.0 69 61-136 102-178 (196)
153 cd00331 IGPS Indole-3-glycerol 68.2 58 0.0013 32.4 11.0 80 52-136 118-201 (217)
154 PRK05567 inosine 5'-monophosph 67.5 87 0.0019 35.5 13.5 110 23-136 230-360 (486)
155 TIGR03088 stp2 sugar transfera 67.4 47 0.001 35.0 10.8 107 31-152 229-337 (374)
156 PRK14974 cell division protein 67.3 78 0.0017 34.4 12.5 106 27-136 164-287 (336)
157 PRK11359 cyclic-di-GMP phospho 67.2 39 0.00085 39.6 11.1 102 46-150 682-794 (799)
158 PRK03708 ppnK inorganic polyph 66.9 45 0.00098 35.1 10.3 100 32-154 1-113 (277)
159 PRK13111 trpA tryptophan synth 66.5 20 0.00044 37.3 7.6 60 91-152 75-140 (258)
160 PRK00748 1-(5-phosphoribosyl)- 66.2 29 0.00062 34.7 8.4 67 64-135 148-219 (233)
161 cd03823 GT1_ExpE7_like This fa 65.9 75 0.0016 32.0 11.6 107 31-152 220-328 (359)
162 TIGR01037 pyrD_sub1_fam dihydr 65.8 81 0.0017 33.0 12.0 59 93-154 223-287 (300)
163 PF07688 KaiA: KaiA domain; I 65.8 33 0.00071 36.0 8.7 79 33-116 2-80 (283)
164 KOG1601 GATA-4/5/6 transcripti 64.7 0.72 1.6E-05 46.0 -3.4 41 538-578 290-330 (340)
165 PLN02274 inosine-5'-monophosph 64.6 1.1E+02 0.0024 35.1 13.6 101 30-136 259-380 (505)
166 TIGR00736 nifR3_rel_arch TIM-b 64.6 66 0.0014 33.1 10.7 95 36-135 116-219 (231)
167 TIGR00343 pyridoxal 5'-phospha 64.5 49 0.0011 35.2 9.9 60 91-153 184-250 (287)
168 cd04727 pdxS PdxS is a subunit 64.4 54 0.0012 34.9 10.1 87 61-153 119-247 (283)
169 PF03808 Glyco_tran_WecB: Glyc 64.2 51 0.0011 31.9 9.4 78 31-115 48-134 (172)
170 PTZ00314 inosine-5'-monophosph 64.0 77 0.0017 36.2 12.1 100 31-136 253-373 (495)
171 PRK08007 para-aminobenzoate sy 63.9 14 0.00029 36.4 5.5 86 34-130 2-91 (187)
172 COG0313 Predicted methyltransf 63.9 52 0.0011 34.8 9.9 111 32-150 31-152 (275)
173 COG3959 Transketolase, N-termi 63.7 10 0.00022 39.0 4.6 69 19-87 155-242 (243)
174 PRK06774 para-aminobenzoate sy 63.6 9.3 0.0002 37.4 4.2 74 34-114 2-79 (191)
175 PRK06895 putative anthranilate 63.6 27 0.00059 34.2 7.5 76 32-114 2-79 (190)
176 smart00052 EAL Putative diguan 63.3 37 0.00081 33.2 8.5 92 46-140 137-239 (241)
177 COG0742 N6-adenine-specific me 62.9 55 0.0012 32.7 9.5 57 28-85 63-122 (187)
178 PRK04302 triosephosphate isome 62.9 1.2E+02 0.0027 30.4 12.3 101 30-136 84-202 (223)
179 PRK15484 lipopolysaccharide 1, 62.4 1.3E+02 0.0028 32.4 13.2 109 31-152 224-343 (380)
180 COG3836 HpcH 2,4-dihydroxyhept 62.4 68 0.0015 33.4 10.2 98 46-146 7-106 (255)
181 cd04723 HisA_HisF Phosphoribos 62.3 1E+02 0.0022 31.3 11.7 68 64-136 148-218 (233)
182 PRK05458 guanosine 5'-monophos 62.1 28 0.0006 37.7 7.8 68 63-134 98-166 (326)
183 PF03060 NMO: Nitronate monoox 62.1 68 0.0015 34.4 10.8 83 48-136 129-219 (330)
184 PF01729 QRPTase_C: Quinolinat 61.9 28 0.00061 34.0 7.2 96 33-135 52-154 (169)
185 PLN02591 tryptophan synthase 61.7 27 0.00058 36.3 7.4 59 91-152 65-129 (250)
186 COG2200 Rtn c-di-GMP phosphodi 61.4 86 0.0019 32.3 11.1 103 43-148 137-250 (256)
187 cd03804 GT1_wbaZ_like This fam 60.8 73 0.0016 33.2 10.6 107 30-153 220-326 (351)
188 PF04321 RmlD_sub_bind: RmlD s 60.6 17 0.00037 37.9 5.8 55 32-88 1-62 (286)
189 PRK02155 ppnK NAD(+)/NADH kina 60.4 73 0.0016 33.8 10.5 102 33-154 7-120 (291)
190 PRK03659 glutathione-regulated 60.4 74 0.0016 37.0 11.5 97 27-134 419-516 (601)
191 TIGR00262 trpA tryptophan synt 60.2 1.7E+02 0.0037 30.4 13.0 110 24-136 105-227 (256)
192 PRK05703 flhF flagellar biosyn 60.1 82 0.0018 35.2 11.3 104 30-134 250-363 (424)
193 PRK03562 glutathione-regulated 60.0 64 0.0014 37.8 10.9 98 26-134 418-516 (621)
194 cd03813 GT1_like_3 This family 59.9 75 0.0016 35.4 11.1 107 31-152 324-441 (475)
195 PF14097 SpoVAE: Stage V sporu 59.8 90 0.002 30.9 10.0 76 34-112 3-87 (180)
196 PRK01372 ddl D-alanine--D-alan 59.7 17 0.00037 37.7 5.6 55 28-84 1-63 (304)
197 cd01948 EAL EAL domain. This d 59.6 36 0.00079 33.3 7.7 91 47-140 137-238 (240)
198 cd04722 TIM_phosphate_binding 59.5 56 0.0012 30.5 8.7 105 26-135 79-198 (200)
199 PRK07259 dihydroorotate dehydr 59.0 1.3E+02 0.0027 31.7 12.0 59 92-153 222-286 (301)
200 KOG1562 Spermidine synthase [A 58.4 32 0.0007 36.9 7.2 80 16-97 130-215 (337)
201 PF09936 Methyltrn_RNA_4: SAM- 58.4 82 0.0018 31.5 9.6 101 32-140 43-162 (185)
202 PRK06543 nicotinate-nucleotide 58.1 1.1E+02 0.0025 32.4 11.3 93 33-135 161-264 (281)
203 PRK12726 flagellar biosynthesi 57.9 1.3E+02 0.0028 33.7 12.1 105 30-136 233-350 (407)
204 CHL00101 trpG anthranilate syn 57.7 25 0.00053 34.6 6.1 76 34-114 2-79 (190)
205 PRK01231 ppnK inorganic polyph 57.4 1E+02 0.0022 32.8 11.0 106 28-154 2-119 (295)
206 PRK09490 metH B12-dependent me 57.3 51 0.0011 41.8 9.9 101 32-136 752-864 (1229)
207 PRK06843 inosine 5-monophospha 57.2 1.4E+02 0.0031 33.3 12.4 101 30-136 164-285 (404)
208 COG0157 NadC Nicotinate-nucleo 57.1 1.3E+02 0.0028 32.1 11.3 95 33-135 160-261 (280)
209 PRK13143 hisH imidazole glycer 57.1 43 0.00094 33.1 7.7 44 32-83 1-44 (200)
210 PRK14098 glycogen synthase; Pr 57.0 1.4E+02 0.003 33.8 12.6 112 31-152 336-450 (489)
211 TIGR00262 trpA tryptophan synt 57.0 42 0.0009 34.9 7.9 59 91-151 73-137 (256)
212 COG1856 Uncharacterized homolo 56.7 79 0.0017 32.8 9.4 100 36-139 118-254 (275)
213 TIGR01334 modD putative molybd 56.5 1.1E+02 0.0023 32.5 10.9 71 58-135 192-262 (277)
214 cd06533 Glyco_transf_WecG_TagA 56.4 76 0.0016 30.7 9.1 86 23-115 35-132 (171)
215 TIGR00735 hisF imidazoleglycer 56.3 1.2E+02 0.0025 31.2 11.0 78 65-148 158-247 (254)
216 PRK06552 keto-hydroxyglutarate 56.1 98 0.0021 31.4 10.2 63 82-147 41-105 (213)
217 TIGR01761 thiaz-red thiazoliny 55.9 1.4E+02 0.0029 32.6 11.8 104 31-152 3-113 (343)
218 PRK05848 nicotinate-nucleotide 55.8 2E+02 0.0042 30.5 12.6 99 28-135 147-256 (273)
219 cd06338 PBP1_ABC_ligand_bindin 55.7 1.2E+02 0.0027 31.4 11.4 77 33-115 143-230 (345)
220 PRK11889 flhF flagellar biosyn 55.6 1.3E+02 0.0028 33.9 11.6 106 29-136 267-385 (436)
221 TIGR00064 ftsY signal recognit 55.5 1.6E+02 0.0034 30.9 11.9 56 28-85 97-162 (272)
222 cd03818 GT1_ExpC_like This fam 55.4 1E+02 0.0022 33.1 10.9 77 63-153 290-366 (396)
223 PRK13566 anthranilate synthase 55.0 40 0.00086 40.3 8.2 79 30-115 525-606 (720)
224 cd01424 MGS_CPS_II Methylglyox 54.9 1.3E+02 0.0028 26.6 9.7 21 40-60 11-31 (110)
225 PRK15427 colanic acid biosynth 54.5 1.4E+02 0.003 32.7 11.8 108 31-152 253-369 (406)
226 PRK05581 ribulose-phosphate 3- 54.3 90 0.002 30.7 9.5 85 49-136 103-198 (220)
227 cd03819 GT1_WavL_like This fam 54.2 2.3E+02 0.0049 29.0 12.8 109 30-151 215-328 (355)
228 PRK07765 para-aminobenzoate sy 53.1 40 0.00086 33.9 6.8 80 32-115 1-84 (214)
229 PRK06843 inosine 5-monophospha 53.0 63 0.0014 36.1 8.8 65 65-135 156-221 (404)
230 TIGR01303 IMP_DH_rel_1 IMP deh 52.9 1.2E+02 0.0026 34.5 11.2 67 63-134 225-292 (475)
231 PRK10669 putative cation:proto 52.7 1E+02 0.0022 35.4 10.9 96 28-134 437-533 (558)
232 PRK05567 inosine 5'-monophosph 52.4 1.3E+02 0.0027 34.3 11.4 66 65-135 230-296 (486)
233 PRK10060 RNase II stability mo 52.4 1.2E+02 0.0026 35.6 11.5 102 45-149 544-656 (663)
234 PRK13587 1-(5-phosphoribosyl)- 52.1 80 0.0017 32.3 8.9 68 65-136 151-221 (234)
235 COG0673 MviM Predicted dehydro 52.1 1.7E+02 0.0037 30.5 11.7 109 30-152 2-116 (342)
236 PRK09922 UDP-D-galactose:(gluc 52.0 1.4E+02 0.0031 31.5 11.2 110 31-154 210-325 (359)
237 COG3172 NadR Predicted ATPase/ 51.6 89 0.0019 31.0 8.5 89 19-121 66-170 (187)
238 PRK07114 keto-hydroxyglutarate 51.2 1.3E+02 0.0028 30.8 10.2 63 84-148 45-109 (222)
239 cd05844 GT1_like_7 Glycosyltra 51.2 2.7E+02 0.0058 28.7 13.0 108 31-152 219-335 (367)
240 cd00381 IMPDH IMPDH: The catal 50.8 2.3E+02 0.0049 30.5 12.5 101 31-135 106-225 (325)
241 PRK13585 1-(5-phosphoribosyl)- 50.6 2.1E+02 0.0045 28.8 11.6 78 63-145 150-237 (241)
242 PF00218 IGPS: Indole-3-glycer 50.5 1.6E+02 0.0034 30.8 10.8 99 33-136 134-238 (254)
243 TIGR03449 mycothiol_MshA UDP-N 50.2 2.1E+02 0.0046 30.4 12.3 107 32-152 253-367 (405)
244 cd00429 RPE Ribulose-5-phospha 50.2 66 0.0014 31.2 7.7 82 51-136 101-194 (211)
245 PRK02083 imidazole glycerol ph 50.0 1.7E+02 0.0037 29.9 11.0 78 65-148 156-245 (253)
246 TIGR01182 eda Entner-Doudoroff 50.0 97 0.0021 31.3 8.9 57 87-147 41-97 (204)
247 cd03801 GT1_YqgM_like This fam 49.9 2.7E+02 0.0058 27.5 12.5 107 31-152 230-340 (374)
248 cd06346 PBP1_ABC_ligand_bindin 49.7 1.5E+02 0.0033 30.5 10.8 82 33-120 139-231 (312)
249 PRK13609 diacylglycerol glucos 49.6 3.2E+02 0.0069 29.1 13.5 105 31-152 230-337 (380)
250 cd02809 alpha_hydroxyacid_oxid 49.4 2.1E+02 0.0045 30.2 11.8 88 45-136 162-256 (299)
251 PF05582 Peptidase_U57: YabG p 49.3 2.1E+02 0.0045 30.6 11.4 52 30-83 104-160 (287)
252 PRK07695 transcriptional regul 49.3 1.1E+02 0.0023 30.2 9.1 68 60-134 101-175 (201)
253 TIGR02855 spore_yabG sporulati 49.3 1.9E+02 0.0042 30.7 11.1 53 29-83 102-159 (283)
254 cd03785 GT1_MurG MurG is an N- 49.2 3.2E+02 0.007 28.2 13.6 65 78-152 253-323 (350)
255 PRK01911 ppnK inorganic polyph 49.1 1.8E+02 0.0039 31.0 11.2 103 32-154 1-121 (292)
256 PRK05637 anthranilate synthase 49.1 31 0.00068 34.6 5.3 77 32-114 2-80 (208)
257 TIGR01133 murG undecaprenyldip 49.1 3.2E+02 0.007 28.2 13.4 93 45-152 222-320 (348)
258 TIGR00308 TRM1 tRNA(guanine-26 48.8 2.2E+02 0.0049 31.3 12.2 81 32-120 70-152 (374)
259 TIGR01163 rpe ribulose-phospha 48.8 57 0.0012 31.8 7.0 101 32-136 80-193 (210)
260 PLN02335 anthranilate synthase 48.8 21 0.00046 36.2 4.1 78 31-114 18-98 (222)
261 PRK07206 hypothetical protein; 48.7 2.2E+02 0.0048 30.9 12.3 30 30-60 1-30 (416)
262 cd04740 DHOD_1B_like Dihydroor 48.7 3.2E+02 0.0068 28.5 13.0 58 93-153 220-283 (296)
263 PRK04296 thymidine kinase; Pro 48.7 15 0.00034 35.9 3.0 90 20-113 19-112 (190)
264 cd01573 modD_like ModD; Quinol 48.6 1.3E+02 0.0029 31.5 10.1 72 58-136 187-258 (272)
265 cd03825 GT1_wcfI_like This fam 48.5 56 0.0012 33.5 7.3 75 32-113 1-82 (365)
266 PLN02591 tryptophan synthase 48.3 3.1E+02 0.0067 28.6 12.6 109 24-137 96-219 (250)
267 PRK07028 bifunctional hexulose 48.3 4.2E+02 0.0092 29.4 15.5 100 47-152 99-211 (430)
268 cd03805 GT1_ALG2_like This fam 48.2 2.2E+02 0.0049 29.8 12.0 108 30-152 244-363 (392)
269 cd04731 HisF The cyclase subun 48.1 1.9E+02 0.0042 29.1 11.0 61 69-135 156-222 (243)
270 TIGR01425 SRP54_euk signal rec 48.0 1.9E+02 0.0041 32.6 11.6 107 29-139 126-250 (429)
271 PLN02823 spermine synthase 47.9 88 0.0019 34.0 8.8 56 30-88 126-187 (336)
272 PRK07428 nicotinate-nucleotide 47.8 82 0.0018 33.5 8.4 101 28-135 161-270 (288)
273 TIGR02082 metH 5-methyltetrahy 47.8 1.3E+02 0.0029 38.1 11.4 104 31-138 732-847 (1178)
274 PRK14722 flhF flagellar biosyn 47.8 1.4E+02 0.003 33.1 10.3 88 32-121 168-261 (374)
275 PLN02775 Probable dihydrodipic 47.6 2.5E+02 0.0053 30.1 11.8 103 30-140 10-138 (286)
276 TIGR01306 GMP_reduct_2 guanosi 47.1 92 0.002 33.7 8.7 56 78-136 109-165 (321)
277 PF04131 NanE: Putative N-acet 47.0 2.9E+02 0.0062 27.9 11.5 69 61-136 99-173 (192)
278 PF01596 Methyltransf_3: O-met 46.8 85 0.0018 31.6 8.0 76 21-99 61-141 (205)
279 PRK00771 signal recognition pa 46.7 3.1E+02 0.0068 30.9 13.2 108 27-135 119-239 (437)
280 PF03328 HpcH_HpaI: HpcH/HpaI 46.7 2E+02 0.0042 28.8 10.6 86 62-150 8-106 (221)
281 PRK06096 molybdenum transport 46.5 90 0.002 33.2 8.4 71 58-135 193-263 (284)
282 PRK10867 signal recognition pa 46.4 2.4E+02 0.0052 31.8 12.1 102 31-135 129-247 (433)
283 PRK05670 anthranilate synthase 46.3 27 0.00059 34.1 4.3 48 34-83 2-49 (189)
284 PRK14994 SAM-dependent 16S rib 46.2 1.4E+02 0.003 31.8 9.8 94 32-134 38-140 (287)
285 PRK03378 ppnK inorganic polyph 46.2 1.8E+02 0.0039 30.9 10.7 103 32-154 6-120 (292)
286 PRK09140 2-dehydro-3-deoxy-6-p 46.2 1.4E+02 0.003 30.0 9.4 64 82-148 38-101 (206)
287 PRK04885 ppnK inorganic polyph 46.2 1.4E+02 0.0031 31.2 9.8 58 78-154 36-94 (265)
288 PRK14723 flhF flagellar biosyn 46.0 1.8E+02 0.004 35.1 11.7 103 32-138 216-333 (767)
289 PRK07896 nicotinate-nucleotide 46.0 1.5E+02 0.0033 31.6 10.0 72 57-135 202-273 (289)
290 cd00331 IGPS Indole-3-glycerol 45.9 1.7E+02 0.0038 28.9 10.1 68 80-150 48-117 (217)
291 PLN02274 inosine-5'-monophosph 45.9 1.1E+02 0.0023 35.2 9.5 64 65-135 251-316 (505)
292 CHL00200 trpA tryptophan synth 45.6 67 0.0015 33.6 7.3 58 91-151 78-141 (263)
293 PF00534 Glycos_transf_1: Glyc 45.6 2.4E+02 0.0053 25.8 11.2 110 30-154 46-159 (172)
294 PRK09016 quinolinate phosphori 45.3 92 0.002 33.4 8.3 69 57-135 211-279 (296)
295 PRK06731 flhF flagellar biosyn 45.2 2.6E+02 0.0057 29.4 11.6 104 31-135 103-218 (270)
296 PRK00811 spermidine synthase; 45.1 1.8E+02 0.0039 30.4 10.5 68 31-101 100-179 (283)
297 PRK06015 keto-hydroxyglutarate 45.1 1.1E+02 0.0023 31.0 8.3 61 83-147 33-93 (201)
298 PRK10909 rsmD 16S rRNA m(2)G96 45.0 2.2E+02 0.0047 28.5 10.6 83 29-116 74-160 (199)
299 PRK06559 nicotinate-nucleotide 44.7 1.4E+02 0.0031 31.8 9.6 92 33-134 169-267 (290)
300 PRK13146 hisH imidazole glycer 44.5 1E+02 0.0022 30.8 8.2 44 32-83 2-47 (209)
301 PRK08318 dihydropyrimidine deh 44.3 2.6E+02 0.0057 30.9 12.1 62 93-154 239-307 (420)
302 PRK06978 nicotinate-nucleotide 44.2 1.3E+02 0.0028 32.3 9.1 93 33-135 178-276 (294)
303 PF02581 TMP-TENI: Thiamine mo 44.0 1.7E+02 0.0037 28.2 9.5 69 59-134 100-175 (180)
304 cd06326 PBP1_STKc_like Type I 43.9 3.5E+02 0.0076 27.8 12.4 81 32-118 137-228 (336)
305 cd03799 GT1_amsK_like This is 43.9 2.5E+02 0.0054 28.6 11.2 108 31-152 210-326 (355)
306 cd04949 GT1_gtfA_like This fam 43.8 2.7E+02 0.0059 29.1 11.7 67 78-153 279-345 (372)
307 TIGR01302 IMP_dehydrog inosine 43.8 3.5E+02 0.0076 30.4 13.1 103 30-136 235-356 (450)
308 PRK12595 bifunctional 3-deoxy- 43.6 1.3E+02 0.0028 33.0 9.4 84 63-150 240-350 (360)
309 cd06356 PBP1_Amide_Urea_BP_lik 43.6 2.3E+02 0.0049 29.7 11.0 78 31-113 132-220 (334)
310 TIGR00734 hisAF_rel hisA/hisF 43.5 1.3E+02 0.0028 30.5 8.8 68 63-135 142-212 (221)
311 PRK05718 keto-hydroxyglutarate 43.5 3.6E+02 0.0078 27.3 11.9 99 30-137 15-136 (212)
312 COG0159 TrpA Tryptophan syntha 43.5 85 0.0018 33.1 7.6 55 91-147 80-140 (265)
313 PRK13397 3-deoxy-7-phosphohept 43.4 1.4E+02 0.0029 31.3 9.0 70 63-140 137-224 (250)
314 PRK04539 ppnK inorganic polyph 43.3 2.6E+02 0.0057 29.8 11.4 103 32-154 6-125 (296)
315 COG0626 MetC Cystathionine bet 43.2 1.8E+02 0.0038 32.5 10.4 102 27-134 98-205 (396)
316 PRK10742 putative methyltransf 43.0 2.2E+02 0.0048 29.8 10.5 57 31-90 110-177 (250)
317 cd06330 PBP1_Arsenic_SBP_like 42.9 2.2E+02 0.0047 29.7 10.8 80 33-116 140-232 (346)
318 PRK11036 putative S-adenosyl-L 42.9 2.8E+02 0.0061 28.2 11.3 76 23-101 58-137 (255)
319 PRK03604 moaC bifunctional mol 42.5 49 0.0011 35.6 5.8 63 22-84 148-222 (312)
320 PF00563 EAL: EAL domain; Int 42.4 41 0.00088 32.8 4.9 84 45-132 138-227 (236)
321 cd02911 arch_FMN Archeal FMN-b 42.3 2.6E+02 0.0057 28.6 10.9 90 38-135 123-219 (233)
322 cd04732 HisA HisA. Phosphorib 42.2 2.2E+02 0.0048 28.3 10.2 69 63-136 147-219 (234)
323 cd06329 PBP1_SBP_like_3 Peripl 42.2 2.8E+02 0.0061 29.0 11.5 78 32-115 144-235 (342)
324 PRK14075 pnk inorganic polypho 42.1 2.1E+02 0.0047 29.6 10.3 84 40-153 11-94 (256)
325 cd04951 GT1_WbdM_like This fam 42.0 1.9E+02 0.0041 29.5 10.0 104 31-151 219-324 (360)
326 cd03806 GT1_ALG11_like This fa 41.9 2.9E+02 0.0062 30.4 11.9 110 31-152 273-391 (419)
327 TIGR00417 speE spermidine synt 41.9 1.9E+02 0.0042 29.9 10.0 68 31-101 96-174 (270)
328 cd08185 Fe-ADH1 Iron-containin 41.7 1.5E+02 0.0033 32.2 9.6 65 31-100 25-103 (380)
329 PRK10818 cell division inhibit 41.6 44 0.00096 34.1 5.2 20 22-41 22-41 (270)
330 PRK12723 flagellar biosynthesi 41.6 3.2E+02 0.0069 30.3 12.1 103 31-136 206-320 (388)
331 PRK10416 signal recognition pa 41.5 2.6E+02 0.0057 30.0 11.2 106 29-136 140-267 (318)
332 PRK15490 Vi polysaccharide bio 41.3 4.6E+02 0.01 30.8 13.6 103 31-148 429-533 (578)
333 cd06388 PBP1_iGluR_AMPA_GluR4 41.3 2E+02 0.0043 31.1 10.4 57 44-104 140-203 (371)
334 PRK03372 ppnK inorganic polyph 41.3 3.2E+02 0.0069 29.3 11.7 103 32-154 6-129 (306)
335 cd02940 DHPD_FMN Dihydropyrimi 41.2 1.7E+02 0.0036 30.9 9.6 42 93-135 239-280 (299)
336 cd08179 NADPH_BDH NADPH-depend 41.2 2.4E+02 0.0052 30.7 11.0 64 32-100 24-101 (375)
337 cd03817 GT1_UGDG_like This fam 41.0 3.8E+02 0.0081 26.9 11.9 106 31-152 233-342 (374)
338 PRK12727 flagellar biosynthesi 41.0 1.9E+02 0.0042 33.6 10.5 53 32-85 381-436 (559)
339 cd04724 Tryptophan_synthase_al 40.9 2.6E+02 0.0056 28.6 10.6 107 24-136 94-215 (242)
340 cd06382 PBP1_iGluR_Kainate N-t 40.6 2.2E+02 0.0048 29.5 10.3 81 32-116 130-218 (327)
341 TIGR03704 PrmC_rel_meth putati 40.6 3.1E+02 0.0068 28.1 11.2 93 31-126 110-228 (251)
342 TIGR01302 IMP_dehydrog inosine 40.6 1.1E+02 0.0023 34.5 8.3 65 64-134 226-291 (450)
343 PRK00025 lpxB lipid-A-disaccha 40.3 3.5E+02 0.0076 28.6 12.0 105 32-153 221-341 (380)
344 PRK13789 phosphoribosylamine-- 40.2 3.6E+02 0.0078 30.1 12.4 61 31-93 4-84 (426)
345 COG0421 SpeE Spermidine syntha 40.1 1.5E+02 0.0033 31.4 9.0 82 18-102 87-179 (282)
346 TIGR01361 DAHP_synth_Bsub phos 40.1 1.3E+02 0.0027 31.5 8.3 90 47-140 124-234 (260)
347 TIGR01579 MiaB-like-C MiaB-lik 39.9 1.9E+02 0.004 31.9 10.0 94 41-150 10-107 (414)
348 PRK05096 guanosine 5'-monophos 39.9 1.6E+02 0.0034 32.3 9.1 55 77-134 122-177 (346)
349 PRK04180 pyridoxal biosynthesi 39.8 85 0.0018 33.5 6.9 60 91-153 190-256 (293)
350 PRK14024 phosphoribosyl isomer 39.5 1.7E+02 0.0037 29.9 9.0 79 64-146 148-238 (241)
351 PRK04128 1-(5-phosphoribosyl)- 39.5 1.2E+02 0.0027 30.8 8.0 67 63-136 144-211 (228)
352 cd01572 QPRTase Quinolinate ph 39.5 2.9E+02 0.0064 28.9 10.9 92 33-134 154-252 (268)
353 cd03115 SRP The signal recogni 39.4 2.9E+02 0.0064 26.0 10.2 88 25-117 22-124 (173)
354 PF03102 NeuB: NeuB family; I 39.4 1.1E+02 0.0023 31.8 7.6 85 41-133 55-143 (241)
355 PRK00726 murG undecaprenyldiph 39.3 4.7E+02 0.01 27.4 13.0 66 78-153 253-324 (357)
356 COG4122 Predicted O-methyltran 39.0 94 0.002 31.8 6.9 68 31-99 84-155 (219)
357 KOG3040 Predicted sugar phosph 38.9 1.5E+02 0.0033 30.5 8.2 82 26-115 34-119 (262)
358 PRK01395 V-type ATP synthase s 38.8 2.5E+02 0.0055 25.3 8.9 51 30-85 2-53 (104)
359 PRK13695 putative NTPase; Prov 38.8 2E+02 0.0042 27.4 8.9 73 77-151 96-172 (174)
360 PRK09522 bifunctional glutamin 38.7 47 0.001 38.3 5.3 76 32-114 2-84 (531)
361 PRK07107 inosine 5-monophospha 38.7 1.9E+02 0.0042 33.1 10.1 104 30-136 253-381 (502)
362 PRK05718 keto-hydroxyglutarate 38.6 3.5E+02 0.0076 27.4 10.9 95 47-147 8-104 (212)
363 cd08187 BDH Butanol dehydrogen 38.5 1.6E+02 0.0034 32.2 9.1 81 31-116 28-137 (382)
364 cd06355 PBP1_FmdD_like Peripla 38.4 1.8E+02 0.0039 30.7 9.3 77 32-112 134-222 (348)
365 cd03802 GT1_AviGT4_like This f 38.3 4.4E+02 0.0094 26.6 12.1 106 30-151 196-306 (335)
366 cd04737 LOX_like_FMN L-Lactate 38.1 2.5E+02 0.0054 30.8 10.4 87 46-136 212-305 (351)
367 PF00977 His_biosynth: Histidi 38.1 1.7E+02 0.0037 29.7 8.7 69 63-135 148-219 (229)
368 PRK02649 ppnK inorganic polyph 38.0 2.6E+02 0.0056 30.0 10.4 102 33-154 3-125 (305)
369 PRK13398 3-deoxy-7-phosphohept 38.0 2E+02 0.0043 30.2 9.3 71 65-139 151-235 (266)
370 cd06359 PBP1_Nba_like Type I p 37.9 4.7E+02 0.01 27.1 12.4 48 63-114 174-221 (333)
371 PLN02316 synthase/transferase 37.8 4.2E+02 0.0091 33.3 13.3 112 31-153 869-998 (1036)
372 PRK13111 trpA tryptophan synth 37.7 4.2E+02 0.0091 27.7 11.7 99 33-137 120-229 (258)
373 PLN02935 Bifunctional NADH kin 37.7 4E+02 0.0086 30.8 12.2 111 20-154 187-319 (508)
374 cd06366 PBP1_GABAb_receptor Li 37.5 4.5E+02 0.0098 27.4 12.2 58 43-104 151-217 (350)
375 PRK11829 biofilm formation reg 37.4 3.2E+02 0.007 31.6 11.9 99 44-147 541-652 (660)
376 PRK01362 putative translaldola 37.4 1.8E+02 0.004 29.5 8.8 91 41-134 85-183 (214)
377 cd04736 MDH_FMN Mandelate dehy 37.2 2.4E+02 0.0052 31.1 10.2 85 46-136 227-318 (361)
378 PF05991 NYN_YacP: YacP-like N 37.1 1.6E+02 0.0034 28.5 8.0 102 41-152 25-132 (166)
379 cd06360 PBP1_alkylbenzenes_lik 37.1 4.8E+02 0.01 26.8 13.4 79 33-115 136-225 (336)
380 PF03830 PTSIIB_sorb: PTS syst 37.0 80 0.0017 30.3 5.8 57 14-73 11-70 (151)
381 cd02810 DHOD_DHPD_FMN Dihydroo 37.0 2.3E+02 0.005 29.3 9.7 41 93-134 230-270 (289)
382 PRK08857 para-aminobenzoate sy 36.9 41 0.0009 33.0 3.9 29 34-62 2-30 (193)
383 TIGR02149 glgA_Coryne glycogen 36.7 3.9E+02 0.0085 28.0 11.6 107 32-152 230-351 (388)
384 cd08181 PPD-like 1,3-propanedi 36.7 2.7E+02 0.0059 30.0 10.5 64 31-99 25-102 (357)
385 cd04731 HisF The cyclase subun 36.6 1.1E+02 0.0024 30.9 7.1 70 62-136 27-100 (243)
386 cd03795 GT1_like_4 This family 36.5 4.7E+02 0.01 26.5 13.7 110 31-153 218-332 (357)
387 cd06348 PBP1_ABC_ligand_bindin 36.4 3.2E+02 0.0069 28.5 10.8 73 42-120 152-231 (344)
388 TIGR01305 GMP_reduct_1 guanosi 36.4 1.5E+02 0.0033 32.4 8.3 68 65-136 110-178 (343)
389 cd03820 GT1_amsD_like This fam 36.3 4.3E+02 0.0093 26.0 12.7 108 31-152 209-318 (348)
390 cd05212 NAD_bind_m-THF_DH_Cycl 36.3 1.1E+02 0.0023 29.1 6.4 52 31-89 28-83 (140)
391 PF01959 DHQS: 3-dehydroquinat 36.2 3.2E+02 0.007 30.1 10.7 71 78-152 97-169 (354)
392 TIGR02095 glgA glycogen/starch 36.1 4.1E+02 0.0088 29.4 12.1 108 31-152 320-436 (473)
393 cd00381 IMPDH IMPDH: The catal 35.9 1.7E+02 0.0037 31.4 8.8 55 78-135 107-162 (325)
394 TIGR00078 nadC nicotinate-nucl 35.9 2.8E+02 0.0062 29.0 10.1 93 33-135 150-249 (265)
395 cd03798 GT1_wlbH_like This fam 35.9 4.3E+02 0.0094 26.2 11.3 108 31-153 233-344 (377)
396 PRK14329 (dimethylallyl)adenos 35.8 2.3E+02 0.0049 32.0 10.1 97 39-151 35-139 (467)
397 PRK08649 inosine 5-monophospha 35.7 5.2E+02 0.011 28.5 12.5 67 63-136 142-215 (368)
398 cd00532 MGS-like MGS-like doma 35.4 1E+02 0.0023 27.5 6.0 41 65-111 57-103 (112)
399 TIGR01306 GMP_reduct_2 guanosi 35.0 6.2E+02 0.013 27.5 13.1 98 33-136 110-227 (321)
400 PRK11425 PTS system N-acetylga 35.0 74 0.0016 30.8 5.2 57 14-73 13-72 (157)
401 PRK02645 ppnK inorganic polyph 34.4 2.8E+02 0.0062 29.5 10.0 102 33-153 5-115 (305)
402 TIGR00696 wecB_tagA_cpsF bacte 34.4 2.6E+02 0.0057 27.4 9.1 66 31-100 48-121 (177)
403 PRK08883 ribulose-phosphate 3- 34.2 1.9E+02 0.0042 29.3 8.4 86 47-136 98-195 (220)
404 cd03794 GT1_wbuB_like This fam 34.0 4E+02 0.0087 26.7 10.8 107 31-151 250-363 (394)
405 PF07652 Flavi_DEAD: Flaviviru 34.0 2.2E+02 0.0048 27.5 8.2 85 30-116 32-135 (148)
406 cd06343 PBP1_ABC_ligand_bindin 33.9 4E+02 0.0086 28.0 11.1 80 32-117 145-235 (362)
407 PF00478 IMPDH: IMP dehydrogen 33.9 6.4E+02 0.014 27.7 12.7 101 30-136 119-240 (352)
408 PRK05234 mgsA methylglyoxal sy 33.8 3.4E+02 0.0074 25.8 9.4 32 38-69 13-46 (142)
409 cd06282 PBP1_GntR_like_2 Ligan 33.8 2.3E+02 0.005 27.7 8.8 64 44-115 18-87 (266)
410 PRK07807 inosine 5-monophospha 33.8 2.2E+02 0.0047 32.5 9.5 67 63-134 227-294 (479)
411 PRK04457 spermidine synthase; 33.8 3.6E+02 0.0078 27.9 10.5 69 31-102 90-166 (262)
412 PF06283 ThuA: Trehalose utili 33.5 1E+02 0.0022 30.6 6.2 76 33-114 1-88 (217)
413 PF13433 Peripla_BP_5: Peripla 33.4 1.2E+02 0.0025 33.5 7.0 89 20-114 124-225 (363)
414 PRK06106 nicotinate-nucleotide 33.3 5E+02 0.011 27.6 11.5 68 58-135 198-265 (281)
415 PRK10551 phage resistance prot 33.0 3.7E+02 0.008 30.8 11.3 99 47-148 402-511 (518)
416 PLN02460 indole-3-glycerol-pho 33.0 5.7E+02 0.012 28.0 12.0 91 43-136 218-317 (338)
417 PRK00654 glgA glycogen synthas 32.9 7.2E+02 0.016 27.6 13.7 108 31-152 311-427 (466)
418 PRK10415 tRNA-dihydrouridine s 32.9 4.4E+02 0.0096 28.2 11.3 103 36-143 114-237 (321)
419 cd06375 PBP1_mGluR_groupII Lig 32.8 2.6E+02 0.0057 31.1 9.9 102 44-150 191-304 (458)
420 COG0134 TrpC Indole-3-glycerol 32.8 5.2E+02 0.011 27.2 11.3 86 45-136 146-236 (254)
421 COG1908 FrhD Coenzyme F420-red 32.8 93 0.002 29.2 5.1 36 105-140 27-64 (132)
422 PRK09860 putative alcohol dehy 32.7 2.4E+02 0.0053 30.9 9.4 64 32-100 32-108 (383)
423 PRK01581 speE spermidine synth 32.6 2.2E+02 0.0049 31.5 9.0 69 31-102 174-257 (374)
424 PRK14967 putative methyltransf 32.4 4.7E+02 0.01 26.0 10.8 49 32-85 60-109 (223)
425 cd08189 Fe-ADH5 Iron-containin 32.4 2.6E+02 0.0056 30.4 9.6 64 32-100 27-103 (374)
426 cd02801 DUS_like_FMN Dihydrour 32.3 4.6E+02 0.01 25.8 10.7 92 39-135 107-212 (231)
427 cd06296 PBP1_CatR_like Ligand- 32.1 1.4E+02 0.0031 29.4 7.0 64 43-115 17-86 (270)
428 COG1748 LYS9 Saccharopine dehy 32.1 3.5E+02 0.0075 30.2 10.4 91 32-131 2-94 (389)
429 TIGR01815 TrpE-clade3 anthrani 32.1 1.6E+02 0.0034 35.4 8.3 78 30-114 515-595 (717)
430 TIGR01859 fruc_bis_ald_ fructo 32.0 1.9E+02 0.004 30.6 8.1 69 61-135 152-229 (282)
431 cd03816 GT1_ALG1_like This fam 32.0 5.8E+02 0.012 27.8 12.3 107 31-153 269-381 (415)
432 COG0269 SgbH 3-hexulose-6-phos 31.9 4.9E+02 0.011 26.8 10.6 100 32-136 84-192 (217)
433 cd03812 GT1_CapH_like This fam 31.9 4.9E+02 0.011 26.6 11.2 108 31-154 223-332 (358)
434 cd00956 Transaldolase_FSA Tran 31.8 2.2E+02 0.0048 28.7 8.3 48 89-136 137-185 (211)
435 PRK00994 F420-dependent methyl 31.7 4E+02 0.0087 28.0 10.0 79 53-137 29-116 (277)
436 cd06345 PBP1_ABC_ligand_bindin 31.6 5.4E+02 0.012 26.8 11.6 67 44-116 161-234 (344)
437 PRK14340 (dimethylallyl)adenos 31.3 3E+02 0.0066 30.8 10.1 110 27-150 2-121 (445)
438 PF01564 Spermine_synth: Sperm 31.2 2.1E+02 0.0046 29.4 8.2 68 31-101 100-179 (246)
439 PRK09134 short chain dehydroge 31.1 2.7E+02 0.0059 27.7 8.9 90 23-115 1-95 (258)
440 cd08186 Fe-ADH8 Iron-containin 31.0 2.2E+02 0.0048 31.0 8.8 63 32-99 27-103 (383)
441 COG1568 Predicted methyltransf 30.9 46 0.00099 35.6 3.2 60 22-84 166-228 (354)
442 PRK03612 spermidine synthase; 30.9 2E+02 0.0043 33.0 8.7 68 32-102 322-404 (521)
443 cd06358 PBP1_NHase Type I peri 30.6 3.3E+02 0.0071 28.3 9.7 79 32-116 133-222 (333)
444 PLN02275 transferase, transfer 30.5 5.5E+02 0.012 27.4 11.6 104 31-150 261-370 (371)
445 cd06332 PBP1_aromatic_compound 30.5 6E+02 0.013 25.9 11.8 53 63-119 174-226 (333)
446 cd03811 GT1_WabH_like This fam 30.4 5.4E+02 0.012 25.3 11.4 105 31-150 220-326 (353)
447 cd06374 PBP1_mGluR_groupI Liga 30.4 1.7E+02 0.0037 32.6 7.9 26 78-103 244-269 (472)
448 PF01081 Aldolase: KDPG and KH 30.4 1.4E+02 0.003 30.1 6.4 62 82-147 36-97 (196)
449 PRK14076 pnk inorganic polypho 30.4 3.8E+02 0.0083 31.1 10.9 105 30-154 289-405 (569)
450 TIGR03407 urea_ABC_UrtA urea A 30.3 3.3E+02 0.0072 28.9 9.8 78 32-113 135-224 (359)
451 PRK13170 hisH imidazole glycer 30.3 1.2E+02 0.0027 29.8 6.1 44 32-83 1-44 (196)
452 cd06349 PBP1_ABC_ligand_bindin 30.2 6.3E+02 0.014 26.1 11.8 84 33-122 137-231 (340)
453 cd03808 GT1_cap1E_like This fa 30.2 4.2E+02 0.0091 26.2 10.1 65 78-152 264-328 (359)
454 cd06281 PBP1_LacI_like_5 Ligan 30.2 2.8E+02 0.0061 27.4 8.8 66 43-116 17-88 (269)
455 TIGR03499 FlhF flagellar biosy 30.2 1.3E+02 0.0029 31.4 6.6 53 32-85 225-280 (282)
456 cd06273 PBP1_GntR_like_1 This 30.2 2.8E+02 0.0061 27.2 8.8 63 44-115 18-86 (268)
457 PRK14607 bifunctional glutamin 30.0 69 0.0015 36.9 4.8 75 33-114 1-80 (534)
458 PLN02716 nicotinate-nucleotide 29.9 3.9E+02 0.0084 28.9 10.0 99 33-134 172-288 (308)
459 COG1091 RfbD dTDP-4-dehydrorha 29.8 1.1E+02 0.0025 32.4 6.0 57 33-92 2-65 (281)
460 PRK11596 cyclic-di-GMP phospho 29.7 3.2E+02 0.007 27.7 9.2 97 49-148 147-253 (255)
461 PRK01033 imidazole glycerol ph 29.7 1.6E+02 0.0034 30.4 7.0 69 63-135 153-225 (258)
462 TIGR00959 ffh signal recogniti 29.7 5.6E+02 0.012 28.9 11.7 104 30-136 127-247 (428)
463 TIGR03590 PseG pseudaminic aci 29.6 5E+02 0.011 26.9 10.7 76 31-117 31-113 (279)
464 PRK09140 2-dehydro-3-deoxy-6-p 29.6 5.9E+02 0.013 25.5 12.5 111 25-144 5-142 (206)
465 cd03807 GT1_WbnK_like This fam 29.6 5.5E+02 0.012 25.5 10.9 106 31-153 224-332 (365)
466 PF00448 SRP54: SRP54-type pro 29.5 3.5E+02 0.0075 26.8 9.1 101 31-136 29-149 (196)
467 COG4262 Predicted spermidine s 29.5 2.7E+02 0.0058 31.2 8.7 70 31-102 313-396 (508)
468 cd04509 PBP1_ABC_transporter_G 29.4 5.4E+02 0.012 25.1 12.4 11 91-101 203-213 (299)
469 PRK07807 inosine 5-monophospha 29.4 5.5E+02 0.012 29.3 11.7 103 31-136 239-359 (479)
470 cd06268 PBP1_ABC_transporter_L 29.4 5.4E+02 0.012 25.1 12.7 83 32-120 136-229 (298)
471 TIGR00096 probable S-adenosylm 29.4 2.7E+02 0.0059 29.5 8.7 79 32-116 26-110 (276)
472 PLN02366 spermidine synthase 29.3 4.3E+02 0.0092 28.3 10.3 69 31-101 115-194 (308)
473 COG1171 IlvA Threonine dehydra 29.3 6.7E+02 0.015 27.6 11.9 105 19-129 109-223 (347)
474 PRK00941 acetyl-CoA decarbonyl 29.3 7.4E+02 0.016 30.2 13.1 115 29-152 235-382 (781)
475 cd08176 LPO Lactadehyde:propan 29.2 3.1E+02 0.0067 29.8 9.5 64 32-100 29-105 (377)
476 PRK08005 epimerase; Validated 28.9 1.6E+02 0.0034 29.9 6.6 86 47-136 98-191 (210)
477 TIGR01163 rpe ribulose-phospha 28.8 4.8E+02 0.01 25.2 10.0 56 91-149 43-99 (210)
478 PF13380 CoA_binding_2: CoA bi 28.7 1.2E+02 0.0025 27.6 5.1 92 33-130 2-103 (116)
479 PLN02819 lysine-ketoglutarate 28.7 6.1E+02 0.013 32.0 12.7 110 31-150 569-692 (1042)
480 TIGR02472 sucr_P_syn_N sucrose 28.6 7.4E+02 0.016 27.2 12.5 79 64-152 327-405 (439)
481 cd03332 LMO_FMN L-Lactate 2-mo 28.6 4.4E+02 0.0096 29.2 10.5 87 45-136 243-337 (383)
482 cd06341 PBP1_ABC_ligand_bindin 28.5 4.4E+02 0.0096 27.3 10.3 72 43-120 149-227 (341)
483 PRK04128 1-(5-phosphoribosyl)- 28.5 4.9E+02 0.011 26.5 10.2 81 62-147 30-115 (228)
484 cd03814 GT1_like_2 This family 28.5 6.2E+02 0.013 25.4 11.6 76 63-152 256-331 (364)
485 cd00405 PRAI Phosphoribosylant 28.4 3.1E+02 0.0066 27.0 8.6 51 77-133 120-178 (203)
486 TIGR00875 fsa_talC_mipB fructo 28.4 3.6E+02 0.0077 27.4 9.1 93 41-137 85-186 (213)
487 PRK08673 3-deoxy-7-phosphohept 28.4 4.3E+02 0.0092 28.8 10.2 69 64-136 216-298 (335)
488 PLN02535 glycolate oxidase 28.4 3.7E+02 0.0081 29.6 9.8 74 61-138 231-310 (364)
489 TIGR00735 hisF imidazoleglycer 28.3 2.6E+02 0.0057 28.6 8.3 72 61-136 29-103 (254)
490 PRK14077 pnk inorganic polypho 28.2 7.4E+02 0.016 26.3 11.8 104 30-153 9-120 (287)
491 COG0118 HisH Glutamine amidotr 28.1 1.4E+02 0.0031 30.3 6.1 36 32-67 2-37 (204)
492 PF00290 Trp_syntA: Tryptophan 28.1 86 0.0019 32.9 4.7 54 91-146 73-132 (259)
493 cd04946 GT1_AmsK_like This fam 28.1 4.6E+02 0.01 28.5 10.7 108 32-152 264-376 (407)
494 cd04726 KGPDC_HPS 3-Keto-L-gul 28.0 2E+02 0.0043 27.9 7.1 84 62-149 10-98 (202)
495 PF11072 DUF2859: Protein of u 27.9 3.3E+02 0.0072 26.2 8.2 75 27-114 59-138 (142)
496 cd06318 PBP1_ABC_sugar_binding 27.8 3.2E+02 0.0069 27.2 8.7 63 45-115 19-88 (282)
497 cd06336 PBP1_ABC_ligand_bindin 27.8 4.4E+02 0.0094 27.7 10.1 78 35-118 143-231 (347)
498 cd06389 PBP1_iGluR_AMPA_GluR2 27.7 4.8E+02 0.01 28.1 10.6 73 40-116 127-213 (370)
499 cd06327 PBP1_SBP_like_1 Peripl 27.7 3.5E+02 0.0075 28.1 9.3 77 32-112 136-223 (334)
500 cd06292 PBP1_LacI_like_10 Liga 27.7 2.8E+02 0.0061 27.4 8.3 67 43-115 17-91 (273)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.87 E-value=2.2e-21 Score=195.57 Aligned_cols=120 Identities=28% Similarity=0.478 Sum_probs=113.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++|||||||+.++..|...|+..||+|..+.++.+|++.+.. . ||+||+|++||++||+++|++||+. ....+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEE
Confidence 489999999999999999999999999999999999999975 3 9999999999999999999999965 55678999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
|+|+.++......++++||+|||+|||.+.||..+|+.++++..
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 99999999999999999999999999999999999999998864
No 2
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-19 Score=197.23 Aligned_cols=121 Identities=26% Similarity=0.518 Sum_probs=114.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+|||||||+.+|..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||++||++++++|++.. +++|
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~--~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~p 78 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP--FDLVLLDIRMPGMDGLELLKEIKSRD--PDLP 78 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhC--CCCC
Confidence 4468999999999999999999999999999999999999999764 99999999999999999999998765 8999
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|||||++.+...+++|++.||.|||.|||+.+.|...+.+++...
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998754
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.81 E-value=1.7e-19 Score=196.66 Aligned_cols=120 Identities=24% Similarity=0.480 Sum_probs=110.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHH--hCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLR--KSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~--~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
|.+||||||++.+|+.|+.++. .+|++|+. |.||.+||+++.+.. |||||+|+.||+|||++|++.+++. .|.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~--~p~ 76 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQ--SPD 76 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHh--CCC
Confidence 3699999999999999999985 67998665 899999999999876 9999999999999999999999874 489
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+-+||+|++++.+.+.+||.+|+.|||+||++..+|..+|.++....
T Consensus 77 ~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 77 TEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred ceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886543
No 4
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.78 E-value=7.3e-18 Score=146.91 Aligned_cols=111 Identities=34% Similarity=0.624 Sum_probs=105.6
Q ss_pred EEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 007462 34 VLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy-~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVIm 112 (603)
||||||++..+..+..+|...|| +|..+.++.+|+..++... ||+||+|+.||+++|+++++.|+... +.+|||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeecccccccccccccccc--ccccEEE
Confidence 79999999999999999999999 8999999999999998866 99999999999999999999998765 7899999
Q ss_pred EecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007462 113 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
+|...+.....+++++|+++||.||++.++|.++|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999998874
No 5
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.76 E-value=3.8e-18 Score=165.19 Aligned_cols=120 Identities=23% Similarity=0.388 Sum_probs=110.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..-|.|||||..+|+.+..+|+..||+|.+..++.+-|...... .|-++|+|+.||+|+|+++..+|.+.. ..+||
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~--~~~PV 79 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERG--IRLPV 79 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcC--CCCCE
Confidence 35789999999999999999999999999999999999885443 489999999999999999999998765 57999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||||++.|..+.++||+.||.|||.|||+...|..++++++.+.
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764
No 6
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.75 E-value=1e-17 Score=164.94 Aligned_cols=122 Identities=20% Similarity=0.371 Sum_probs=110.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC-CCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKS-SYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++|||||||+.+.++-+.+++.. ||.++. |.++++|..+++... |||||+|+-||+.+|++||..|+... ..+-
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~D 76 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQH--YPVD 76 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcC--CCCC
Confidence 48999999999999999999864 888665 889999999999765 99999999999999999999998754 5788
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcccc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 157 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~~ 157 (603)
||++|+..+.+.+.+++..||.|||+|||..+.|.++|.+..+.+...
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887665443
No 7
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.74 E-value=5.1e-19 Score=133.92 Aligned_cols=44 Identities=57% Similarity=1.005 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcccCCCCccchhhhhhhhhcCCCcccceeecc
Q 007462 541 REAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQV 584 (603)
Q Consensus 541 r~~~~~r~~~k~~~r~~~k~~ry~~rk~~a~~r~rv~g~f~~~~ 584 (603)
|+++|+||++||++|+|+|+|||+|||.+||.|||||||||++.
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~ 44 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS 44 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence 68999999999999999999999999999999999999999985
No 8
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=2.3e-17 Score=173.06 Aligned_cols=119 Identities=29% Similarity=0.487 Sum_probs=112.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh-cccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME-HEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~-~~~~~~IP 109 (603)
.++||+|||.+..+..++.+|+..||.|..|.+|++|++++.... +|+||+|++||+|||+++|.+|+. .+.+..||
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip 91 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIP 91 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCcccccc
Confidence 479999999999999999999999999999999999999998876 999999999999999999999998 77788999
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
||++|++.+.+...+++..||+|||.|||++.+|...+...+
T Consensus 92 ~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 92 VILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred eEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998885433
No 9
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.71 E-value=3e-16 Score=139.97 Aligned_cols=120 Identities=32% Similarity=0.550 Sum_probs=105.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGL-KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~-eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
...+||||||++..+..+..+|...|+.|..+.++. +|++.++... .||+||+|+.||++||+++++.|+.. .+.+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~--~~~~ 80 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRAR--GPNI 80 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhC--CCCC
Confidence 357999999999999999999999999999999995 9999998752 39999999999999999999999876 3578
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE-LRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~e-L~~~L~~v~r 152 (603)
|||++|++........++..|+++||.||+...+ |...+.+++.
T Consensus 81 pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 81 PVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred CEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 8999999998887788899999999999977776 7777775543
No 10
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.71 E-value=1.9e-16 Score=157.65 Aligned_cols=122 Identities=21% Similarity=0.375 Sum_probs=110.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC-CEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSS-YRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~G-y~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++.+|..|+.+|...+ ++|+. +.++.++++.++... ||+||+|+.||+++|+++++.|++ ..++++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~--~~p~~~ 76 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRA--RGPDIK 76 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHH--HCCCCc
Confidence 479999999999999999998765 88665 678999999987755 999999999999999999999984 348899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcccc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 157 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~~ 157 (603)
||++|.+.+...+.+++..||++|+.|....++|..+|+.+..+....
T Consensus 77 vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~ 124 (211)
T COG2197 77 VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYL 124 (211)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEe
Confidence 999999999999999999999999999999999999999998776443
No 11
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.71 E-value=9.1e-17 Score=174.37 Aligned_cols=163 Identities=25% Similarity=0.402 Sum_probs=133.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
...+||||||+...+..|+.+|...||+|..+.++.+|+..+.+.. ||+||+|+.||++||+++++++|.......+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 4579999999999999999999999999999999999999999865 99999999999999999999999988888999
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccccCCCCccccchhhHHHHHHhhhcccccccccch
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGY 189 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~~~s~~~~~~~~~~~~~l~~a~~~~~~s~~~~~~ 189 (603)
||++++.++.....+|++.|++|||+||+...+|...+.+.+++.+.. ..+........ .....+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~-------------~~L~~~~~~~~-~l~~~D~ 274 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE-------------RQLRESLERLQ-ELALVDG 274 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHH-------------HHHHHHHHHHH-Hhhcccc
Confidence 999999999999999999999999999999999999988887765321 11111111110 0122355
Q ss_pred hHhhhhchhHhhcCchhhh
Q 007462 190 MACIQSKGEFIEKGSDEQS 208 (603)
Q Consensus 190 l~~l~~~~~~~e~gs~~~s 208 (603)
++.+.+++.|.+.......
T Consensus 275 LTGL~NRR~~~~~L~~~~~ 293 (435)
T COG3706 275 LTGLFNRRYFDEHLADLWK 293 (435)
T ss_pred ccCcccHHHHHHHHHHHHH
Confidence 6677777776666554443
No 12
>PLN03029 type-a response regulator protein; Provisional
Probab=99.68 E-value=7.6e-16 Score=154.04 Aligned_cols=123 Identities=33% Similarity=0.601 Sum_probs=110.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC------------------CCceEEEEeCCCCCCCH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRP------------------RNIDLILTEVDLPSISG 92 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~------------------~~pDLVLlDl~MPgmDG 92 (603)
.++||||||++..+..+..+|...||+|..+.++.+|++.+.... ..+||||+|+.||+++|
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 579999999999999999999999999999999999999986432 12679999999999999
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
+++++.|+.......+|||++|+........+++..|+++||.||+...+|..++.++.+.
T Consensus 88 ~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 88 YDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 9999999876545689999999999999999999999999999999999998887776544
No 13
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.68 E-value=1.3e-15 Score=148.82 Aligned_cols=122 Identities=29% Similarity=0.430 Sum_probs=112.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+||||||++..+..+...|+..||++..+.++.++++.+.... ||+||+|+.||+++|+++++.|+.....+.+|
T Consensus 1 m~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~~p 78 (229)
T PRK10161 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLDWMLPGGSGIQFIKHLKRESMTRDIP 78 (229)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhccccCCCC
Confidence 5679999999999999999999999999999999999999987644 99999999999999999999998754446799
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++++..+.....+++..||++||.||++..+|...++.++++
T Consensus 79 vi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 79 VVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988765
No 14
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.68 E-value=1.2e-15 Score=151.40 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=109.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK-SSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~-~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
.++||||||++.++..+..+|.. .++. |..+.++.+|++.+.... |||||+|+.||+++|+++++.|+... +.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~--~~~ 79 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAH--YPG 79 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcC--CCC
Confidence 47999999999999999999986 4785 567999999999998755 99999999999999999999998643 467
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
+||++|+..+.....+++..||++||.||++.++|...|+++..+..
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876553
No 15
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.67 E-value=1.8e-15 Score=145.66 Aligned_cols=123 Identities=31% Similarity=0.471 Sum_probs=112.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+||||||++..+..+..+|...|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.....+.+|
T Consensus 1 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ 78 (226)
T TIGR02154 1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIP 78 (226)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCC
Confidence 4578999999999999999999989999999999999999987654 99999999999999999999998654446799
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++++..+......++..||++||.||+..++|...+..++++.
T Consensus 79 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 79 IIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999887654
No 16
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.66 E-value=2.3e-15 Score=146.37 Aligned_cols=119 Identities=24% Similarity=0.408 Sum_probs=110.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
|+||||||++..+..+...|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~--~~~pii 76 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 38999999999999999999999999999999999999987654 99999999999999999999998643 689999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++..+......++..||++||.||++..+|...++.++++.
T Consensus 77 ~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887654
No 17
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.66 E-value=2.6e-15 Score=145.94 Aligned_cols=118 Identities=27% Similarity=0.391 Sum_probs=109.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi 76 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQW---SAIPVI 76 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 58999999999999999999999999999999999999887644 9999999999999999999999863 478999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++..+......++..||++||.||+...+|...++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999887654
No 18
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.66 E-value=2.6e-15 Score=145.62 Aligned_cols=120 Identities=23% Similarity=0.420 Sum_probs=111.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|.++||||||++..+..+...|...||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 1 ~~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~---~~~~ 75 (221)
T PRK10766 1 MSYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQH--VDLILLDINLPGEDGLMLTRELRSR---STVG 75 (221)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhC---CCCC
Confidence 5679999999999999999999999999999999999999987654 9999999999999999999999864 4789
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++++..+......++..||+|||.||++..+|...+..++++.
T Consensus 76 ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 76 IILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred EEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999887764
No 19
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.66 E-value=3.4e-15 Score=145.57 Aligned_cols=119 Identities=25% Similarity=0.494 Sum_probs=109.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
|+||||||++..+..+...|...||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~~~~~~g~~~~~~lr~~~--~~~pii 76 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD--YDLIILDIMLPDVNGWDIVRMLRSAN--KGMPIL 76 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 38999999999999999999999999999999999999887654 99999999999999999999998643 679999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++..+......++..||++||.||++..+|...++.++++.
T Consensus 77 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 77 LLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (227)
T ss_pred EEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887653
No 20
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.65 E-value=4.6e-15 Score=142.80 Aligned_cols=119 Identities=25% Similarity=0.415 Sum_probs=109.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..+..+|...|+.+..+.++.++++.+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~--~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKK--YTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 48999999999999999999999999999999999999887654 99999999999999999999998643 678999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++..+......++..||++||.||++.++|...++.++++.
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999887654
No 21
>PRK11173 two-component response regulator; Provisional
Probab=99.64 E-value=5.4e-15 Score=145.87 Aligned_cols=118 Identities=24% Similarity=0.443 Sum_probs=109.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+...|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~---~~~pii 78 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEND--INLVIMDINLPGKNGLLLARELREQ---ANVALM 78 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHhcC---CCCCEE
Confidence 58999999999999999999999999999999999999997654 9999999999999999999999863 478999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++..+......++..||++||.||++..+|...++.++++.
T Consensus 79 ~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 79 FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999888764
No 22
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.63 E-value=7.4e-15 Score=144.60 Aligned_cols=121 Identities=22% Similarity=0.382 Sum_probs=111.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
...+||||||++..+..+...|...||++..+.++.++++.+.... ||+||+|+.||+++|+++++.|+... +.+|
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~--~~~p 79 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRES--FHLMVLDLMLPGEDGLSICRRLRSQN--NPTP 79 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 3469999999999999999999999999999999999999987654 99999999999999999999998643 6799
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++++..+......++..|+++||.||++..+|...++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 80 IIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999887664
No 23
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.63 E-value=8.8e-15 Score=140.85 Aligned_cols=119 Identities=26% Similarity=0.414 Sum_probs=109.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..+..+|...|+++..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. .+.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~i~~~--~~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP--YDAVILDLTLPGMDGRDILREWREK--GQREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhc--CCCCcEE
Confidence 48999999999999999999999999999999999999887644 9999999999999999999999864 3679999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|+..+......++..||++||.||++.++|..+++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998887653
No 24
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.63 E-value=8.3e-15 Score=146.62 Aligned_cols=121 Identities=21% Similarity=0.368 Sum_probs=106.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRK-SSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++..+..+..+|.. .++.++ .+.++.+|++.+......|||||+|+.||+++|+++++.|+... +.+|
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~--~~~~ 79 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKSD 79 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC--CCCC
Confidence 6999999999999999999986 477654 67899999998863223499999999999999999999998643 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++|+..+.....+++..|+++||.||++.++|...|.+++.+.
T Consensus 80 vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765543
No 25
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.62 E-value=1.2e-14 Score=143.39 Aligned_cols=118 Identities=24% Similarity=0.335 Sum_probs=108.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..|...|+..||.+..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~---~~~pii 76 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPK---WQGPIV 76 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 58999999999999999999999999999999999999997654 9999999999999999999999863 367999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++..+......++..||+|||.||+...+|...+..++++.
T Consensus 77 ~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 77 LLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999988888899999999999999999999999998887664
No 26
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.62 E-value=1.3e-14 Score=141.23 Aligned_cols=117 Identities=30% Similarity=0.475 Sum_probs=107.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|...||.+..+.++.++++.+.. .||+||+|+.||+++|+++++.|+... + +|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~--~-~~ii 75 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTH--Q-TPVI 75 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcC--C-CcEE
Confidence 589999999999999999999999999999999999998863 399999999999999999999998643 3 8999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|+..+......+++.||++||.||++..+|...++.++++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 76 MLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887664
No 27
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.62 E-value=1.4e-14 Score=140.03 Aligned_cols=119 Identities=28% Similarity=0.477 Sum_probs=109.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~ii 79 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQP--PDLVILDVGLPDISGFELCRQLLAFH--PALPVI 79 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCEE
Confidence 58999999999999999999999999999999999999887654 99999999999999999999998643 689999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++..+......++..||++||.||++..+|...++.++++.
T Consensus 80 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 80 FLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 9999999999999999999999999999999999998887654
No 28
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.61 E-value=1.9e-14 Score=140.11 Aligned_cols=118 Identities=25% Similarity=0.401 Sum_probs=108.7
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeE
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg--mDGleLLr~Lr~~~~~~~IPV 110 (603)
+||||||++..+..+...|+..||.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.|+... +.+||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~--~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLS--ATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 6999999999999999999999999999999999999987654 999999999998 58999999998643 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+......++.+||++||.||+...+|...++.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888764
No 29
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.61 E-value=1.7e-14 Score=143.11 Aligned_cols=118 Identities=21% Similarity=0.408 Sum_probs=106.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..|...|+..||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii 76 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATK---SDVPII 76 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEE
Confidence 48999999999999999999999999999999999999987654 9999999999999999999999763 468999
Q ss_pred EEecC-CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~-~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++. .+.....+++.+||++||.||++..+|...++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 77 IISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred EEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 99985 46677789999999999999999999999999887764
No 30
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.61 E-value=2.3e-14 Score=138.60 Aligned_cols=118 Identities=31% Similarity=0.488 Sum_probs=108.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
|+||||||++..+..+...|...|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD--YALIILDIMLPGMDGWQILQTLRTA---KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 38999999999999999999999999999999999999987654 9999999999999999999999863 468999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++..+.....+++..||++||.||+...+|...++.++++.
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999887653
No 31
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.61 E-value=4e-15 Score=173.47 Aligned_cols=119 Identities=25% Similarity=0.496 Sum_probs=111.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||||||+...+.+.+.+|.+.|.++.++.+|.+|++.+.. .+.||+||+|++||.|||+++.++||+... .++||
T Consensus 666 g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~pI 743 (786)
T KOG0519|consen 666 GPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLPI 743 (786)
T ss_pred CCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhc-CCCCE
Confidence 5799999999999999999999999999999999999999983 245999999999999999999999997654 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
|.||+..+.....+|++.|+++||.|||+.+.|+..+++++
T Consensus 744 vAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 744 VALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888765
No 32
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.61 E-value=9.1e-15 Score=171.21 Aligned_cols=122 Identities=25% Similarity=0.416 Sum_probs=113.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..++.+|...|+.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|++....+++||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 479999999999999999999999999999999999999998755 999999999999999999999997655578999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+|+..|+++||.||++..+|...|.++....
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999998876543
No 33
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.60 E-value=3e-14 Score=139.30 Aligned_cols=119 Identities=27% Similarity=0.499 Sum_probs=109.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~---~~~~i 80 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ--PDLVILDVMMPKLDGYGVCQEIRKE---SDVPI 80 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCcE
Confidence 579999999999999999999999999998999999999887654 9999999999999999999999863 47999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++++..+......++..||++||.||++..+|...+..++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 81 IMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998887654
No 34
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.59 E-value=1.7e-14 Score=171.31 Aligned_cols=120 Identities=24% Similarity=0.444 Sum_probs=111.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|+..||+|..+.+|.+|++.+.... ||+||+|+.||+|+|+++++.|++.. +.+||
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~--~~~pI 876 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLG--LTLPV 876 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 469999999999999999999999999999999999999998755 99999999999999999999998754 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+....+...+|+..|+++||.||++..+|...|.++..+.
T Consensus 877 I~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 877 IGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998876543
No 35
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.59 E-value=3.2e-14 Score=143.75 Aligned_cols=121 Identities=19% Similarity=0.347 Sum_probs=107.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
.++||||||++..+..+..+|... ++.++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.......+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 368999999999999999999854 56655 6899999999998754 9999999999999999999999876544458
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||++|+........+++..|+++||.||++..+|...|++++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988654
No 36
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.58 E-value=2.1e-14 Score=168.40 Aligned_cols=121 Identities=21% Similarity=0.411 Sum_probs=111.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc--cCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE--ICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~--~~~~I 108 (603)
.++||||||++..+..+..+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... ..+.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 368999999999999999999999999999999999999998755 99999999999999999999998642 23679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||++|+..+.....+++..|+++||.||++..+|..++.++...
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999877543
No 37
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.58 E-value=4.7e-14 Score=134.87 Aligned_cols=119 Identities=15% Similarity=0.270 Sum_probs=108.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
++||||||++..+..+...|+..|+.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++... +.+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQ--YSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 4899999999999999999998999987 6899999999988654 99999999999999999999998643 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++++..+......++..|+++||.||++.++|...++.+.++.
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887653
No 38
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.58 E-value=5.3e-14 Score=135.02 Aligned_cols=117 Identities=32% Similarity=0.486 Sum_probs=108.1
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEE
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVIml 113 (603)
||||||++..+..+...|...|+.+..+.++.++++.+.... ||+||+|+.||+++|+++++.|+.. .+.+|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~--~~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDD--YDLIILDVMLPGMDGWQILQTLRRS--GKQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcc--CCCCcEEEE
Confidence 689999999999999999999999999999999999987654 9999999999999999999999864 368999999
Q ss_pred ecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 114 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++..+......++..||++||.||+...+|...++.++++.
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999887654
No 39
>PRK09483 response regulator; Provisional
Probab=99.58 E-value=5.6e-14 Score=135.59 Aligned_cols=119 Identities=23% Similarity=0.356 Sum_probs=108.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++..+..+..+|+.. |+.++ .+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. .+.+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~ 77 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRY--TPDVK 77 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHH--CCCCe
Confidence 69999999999999999999874 88876 6899999999998654 9999999999999999999999764 47899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||+++...+......++..|+++||.||++.++|..+++.++.+.
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 78 IIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999887654
No 40
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.57 E-value=1.3e-14 Score=155.11 Aligned_cols=119 Identities=24% Similarity=0.407 Sum_probs=108.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||||||++..+..|..+|.. .+.+..+.++.+|+..+.... |||||+|+.||+++|+++++.|++...++.+||
T Consensus 155 ~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~--~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~i 231 (457)
T PRK09581 155 DGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETN--YDLVIVSANFENYDPLRLCSQLRSKERTRYVPI 231 (457)
T ss_pred CceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCC--CCEEEecCCCCCchHhHHHHHHHhccccCCCcE
Confidence 46899999999999999999964 577778999999999987654 999999999999999999999997655679999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
|++|++.+.+.+.+|+..||+|||.||++.++|...|.....
T Consensus 232 i~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 232 LLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred EEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988876544
No 41
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.57 E-value=7.7e-15 Score=150.15 Aligned_cols=117 Identities=22% Similarity=0.400 Sum_probs=105.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++|+|||||..+...|..+|.+.|..+..|....+|++.|+... |||||+|+.||+|+|++++++++... +.+|||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~--~~v~ii 76 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPII 76 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhh--ccCcEE
Confidence 48999999999999999999999988888999999999999765 99999999999999999999998876 789999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|++.. .+..++...+.|||+||++++.|-.+|.++.++.
T Consensus 77 fIssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 77 FISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred EEecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 9999864 4556778888999999999999999999887554
No 42
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.57 E-value=3.4e-14 Score=133.43 Aligned_cols=115 Identities=18% Similarity=0.335 Sum_probs=107.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
...||||||..+...|...++.-||.|..+.+.++|+..++... |.-.++|+.|.+.+|+++++.|++.. .+..||
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~--~d~riv 85 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERR--ADMRIV 85 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcC--CcceEE
Confidence 36899999999999999999999999999999999999999866 99999999999999999999998765 789999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
++|++.+...+++|+++||++||.||-+.+.+..++.+-
T Consensus 86 vLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 86 VLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 999999999999999999999999999999988777643
No 43
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.57 E-value=5.8e-14 Score=137.89 Aligned_cols=119 Identities=11% Similarity=0.221 Sum_probs=106.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCC---CCHHHHHHHHHhcccCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSY-R-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS---ISGFALLTLVMEHEICK 106 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy-~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg---mDGleLLr~Lr~~~~~~ 106 (603)
++||||||++..+..+..+|...++ . +..+.++.++++.+.... |||||+|+.||+ ++|+++++.|+.. .+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~--~~ 79 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRH--FP 79 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHH--CC
Confidence 6999999999999999999987665 4 556899999999987654 999999999999 5999999999764 36
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+|||++|...+......+++.||++||.||+..++|..+|+.+..+.
T Consensus 80 ~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 80 SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred CCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 899999999999999999999999999999999999999999887654
No 44
>PRK15115 response regulator GlrR; Provisional
Probab=99.56 E-value=5.3e-14 Score=153.21 Aligned_cols=121 Identities=22% Similarity=0.445 Sum_probs=111.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
.-..+||||||++..+..+..+|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+.. .+.+
T Consensus 3 ~~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~--~dlvilD~~lp~~~g~~ll~~l~~~--~~~~ 78 (444)
T PRK15115 3 RKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREK--VDLVISDLRMDEMDGMQLFAEIQKV--QPGM 78 (444)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhc--CCCC
Confidence 34579999999999999999999999999999999999999998654 9999999999999999999999864 4789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||++|+..+.....+++..|+.+||.||+...+|...+..++..
T Consensus 79 pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 79 PVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred cEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988764
No 45
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.55 E-value=5.1e-14 Score=152.75 Aligned_cols=119 Identities=30% Similarity=0.497 Sum_probs=110.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|...||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+... +.+||
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~DlvilD~~m~~~~G~~~~~~ir~~~--~~~~v 80 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGIATLKEIKALN--PAIPV 80 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 479999999999999999999999999999999999999998654 99999999999999999999998643 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|++|++.+...+..++..|+.+||.||++..+|...+.+++.+
T Consensus 81 i~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 81 LIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 46
>PRK14084 two-component response regulator; Provisional
Probab=99.55 E-value=1.1e-13 Score=137.96 Aligned_cols=117 Identities=20% Similarity=0.353 Sum_probs=101.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSS-Y-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~G-y-~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++..+..+..+|...+ + .+..+.++.+|+..+.... |||||+|+.||+++|+++++.|+... +.++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~--~dlv~lDi~m~~~~G~~~~~~i~~~~--~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQ--YDIIFLDINLMDESGIELAAKIQKMK--EPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCE
Confidence 589999999999999999998765 4 4667899999999987654 99999999999999999999998643 5678
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++|++.. ...++++.|+.+||.||+..++|..++.++....
T Consensus 77 iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 77 IIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 999988754 5678999999999999999999999999886543
No 47
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.55 E-value=6.3e-14 Score=165.42 Aligned_cols=121 Identities=26% Similarity=0.371 Sum_probs=111.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC-Ce
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN-IP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~-IP 109 (603)
..+||||||++..+..+..+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....... +|
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHA--FDLALLDINLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCCC--CCEEEECCCCCCCCHHHHHHHHHhCccccCCCe
Confidence 358999999999999999999999999999999999999998754 999999999999999999999987653323 99
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++|+........+++..|+++||.||++..+|...|.+++..
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 48
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.54 E-value=6.7e-14 Score=164.52 Aligned_cols=121 Identities=26% Similarity=0.345 Sum_probs=111.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|...||.|..+.++.+|++.+... ..|||||+|+.||++||+++++.|+.. .+.+||
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~--~~~~~i 757 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQ--YPSLVL 757 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCE
Confidence 46999999999999999999999999999999999999988643 248999999999999999999999864 478999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+........+++..|+++||.||++.++|...|.+++...
T Consensus 758 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 758 IGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999887654
No 49
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.53 E-value=2.3e-13 Score=129.31 Aligned_cols=115 Identities=27% Similarity=0.382 Sum_probs=103.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKS-SYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~-Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++..+..|..+|... ++. +..+.++.++++.+.... ||+||+|+.||+++|+++++.|+ +.+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~-----~~~~ 74 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRG--VQVCICDISMPDISGLELLSQLP-----KGMA 74 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHc-----cCCC
Confidence 68999999999999999999754 665 457899999999997654 99999999999999999999985 2579
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||+++...+......++..||++||.||++.++|..+|+.+.++
T Consensus 75 vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 75 TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999988765
No 50
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.53 E-value=1.7e-13 Score=150.39 Aligned_cols=118 Identities=25% Similarity=0.441 Sum_probs=109.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|...||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~--~~~pvI 79 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRH--PMLPVI 79 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhC--CCCeEE
Confidence 58999999999999999999999999999999999999998755 99999999999999999999998643 679999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
++|+..+......++..|+.+||.||+...+|...+.+++..
T Consensus 80 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred EEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654
No 51
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.52 E-value=3.5e-13 Score=128.63 Aligned_cols=120 Identities=22% Similarity=0.386 Sum_probs=107.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+||||||++..+..+..+|... ++.++ .+.++.++++.+.... ||+||+|+.||+++|+++++.|+.. .+.+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~--~~~~ 78 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP--VDLIIMDIDLPGTDGFTFLKRIKQI--QSTV 78 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHh--CCCC
Confidence 368999999999999999999876 57775 5889999999887654 9999999999999999999999864 3679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|||++++..+......++..|+++|+.||++.++|...++.++.+.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 79 KVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred cEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999998887653
No 52
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.52 E-value=1.4e-13 Score=159.66 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=107.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC-Ce
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN-IP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~-IP 109 (603)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.....+. +|
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~--~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPDE--YDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCC--CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 479999999999999999999999999999999999999998654 999999999999999999999987543345 48
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++|+.... ....++..|+++||.||++..+|...|.+++...
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 9999987654 4678999999999999999999999999887543
No 53
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.52 E-value=2e-13 Score=148.97 Aligned_cols=119 Identities=24% Similarity=0.449 Sum_probs=109.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||||||++..+..+..+|...||+|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+.. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~--~~~~pv 79 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSH--ETRTPV 79 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 468999999999999999999999999999999999999998654 9999999999999999999999864 368999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|++|+..+......++..|++|||.||++.++|...+.+++..
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999888876543
No 54
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.52 E-value=4.4e-13 Score=128.95 Aligned_cols=119 Identities=26% Similarity=0.475 Sum_probs=108.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..+..+|...|+.+..+.++.++++.+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~vild~~~~~~~~~~~~~~i~~~~--~~~~ii 76 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEM--YALAVLDINMPGMDGLEVLQRLRKRG--QTLPVL 76 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEE
Confidence 47999999999999999999999999999999999998887644 99999999999999999999998653 578999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+++...+.....+++..|+++||.||+...+|...++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 77 LLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred EEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998887654
No 55
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.52 E-value=2.5e-13 Score=134.30 Aligned_cols=115 Identities=19% Similarity=0.393 Sum_probs=98.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSS-YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~G-y~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++..+..|..+|+..+ +.+ ..+.++.++++.+.... |||||+|+.||+++|+++++.|+.. ...+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlv~lDi~~~~~~G~~~~~~l~~~---~~~~ 76 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLK--PDVVFLDIQMPRISGLELVGMLDPE---HMPY 76 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHhccc---CCCE
Confidence 799999999999999999999887 343 45889999999987644 9999999999999999999998532 2457
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++|++. +.+.+++..||.+||.||++.++|...+.++...
T Consensus 77 ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 77 IVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88888875 4667999999999999999999999999888654
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.52 E-value=3.2e-13 Score=144.44 Aligned_cols=122 Identities=25% Similarity=0.394 Sum_probs=111.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|+.+||||||++..+..+..+|...||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.....+.+|
T Consensus 1 M~~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 1 MTARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIP 78 (457)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 3458999999999999999999988999999999999999998654 99999999999999999999998754445799
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++++..+.....+++..|+++||.||++.++|..++..+++.
T Consensus 79 ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 79 VVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887654
No 57
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.51 E-value=2.2e-13 Score=148.50 Aligned_cols=114 Identities=19% Similarity=0.348 Sum_probs=104.7
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC-----CCHHHHHHHHHhcccCCCC
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-----ISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-----mDGleLLr~Lr~~~~~~~I 108 (603)
||||||++..+..+...| .||+|..+.++.+|++.+.... |||||+|+.||+ ++|+++++.|+.. .+.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~--~dlvllD~~mp~~~~~~~~g~~~l~~i~~~--~~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE--PAVVTLDLGLPPDADGASEGLAALQQILAI--APDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcCCCCCHHHHHHHHHhh--CCCC
Confidence 699999999999999988 7899999999999999998754 999999999996 8999999999764 3789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||++|+..+.....+++..||+|||.||++.++|...|++++..
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999877643
No 58
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.51 E-value=1.3e-12 Score=111.80 Aligned_cols=121 Identities=22% Similarity=0.493 Sum_probs=108.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
.++||++++++.....+...|...|+. +..+.++.+++..+.... +|+||+|+.+++++|+++++.++.....+.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--FGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccC--CCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 369999999999999999999988985 777889999999887654 99999999999999999999998754446789
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
+|+++..........++..|+.+|+.||++..+|...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999988888999999999999999999999999999888754
No 59
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.49 E-value=3.7e-13 Score=147.27 Aligned_cols=116 Identities=27% Similarity=0.456 Sum_probs=107.5
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEE
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVIml 113 (603)
||||||++..+..+..+|...||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+.. .+.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlVllD~~~p~~~g~~ll~~l~~~--~~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQ--PDLLITDVRMPGEDGLDLLPQIKKR--HPQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHHh--CCCCeEEEE
Confidence 699999999999999999999999999999999999997654 9999999999999999999999864 367999999
Q ss_pred ecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 114 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|+..+.....+++..|+++||.||+..++|...+.+++..
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887653
No 60
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.49 E-value=8.5e-13 Score=129.07 Aligned_cols=118 Identities=26% Similarity=0.427 Sum_probs=108.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|...|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~---~~~pii 85 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTP--PDLILLDLMLPGTDGLTLCREIRRF---SDIPIV 85 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 48999999999999999999999999999999999999997654 9999999999999999999999853 478999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+++...+......++..|+++||.||+...+|...++.++++.
T Consensus 86 ~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred EEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 9999999888999999999999999999999999998887654
No 61
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.49 E-value=3.4e-13 Score=163.23 Aligned_cols=119 Identities=21% Similarity=0.389 Sum_probs=110.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.. .+.+||
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~i~~~--~~~~pi 1033 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQH--YDLLITDVNMPNMDGFELTRKLREQ--NSSLPI 1033 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 468999999999999999999999999999999999999998654 9999999999999999999999864 368999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|++|+..+.....+++..|+++||.||++.++|...|+++...
T Consensus 1034 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1034 WGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999877543
No 62
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.49 E-value=4.9e-13 Score=141.25 Aligned_cols=115 Identities=23% Similarity=0.391 Sum_probs=98.0
Q ss_pred CEEEEEecCHHHHHHHHHHH-HhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALL-RKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL-~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++..+..+..+| +..+++++ .+.++.+|++.+.... ||+||+|+.||+|+|++++++|+.. ..+|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~---~~~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAE---RPCP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHH---CCCc
Confidence 48999999999999999999 46788876 6899999999998754 9999999999999999999999864 3589
Q ss_pred EEEEecCC--CHHHHHHHHHcCCcEEEeCCC---------CHHHHHHHHHHHH
Q 007462 110 VIMMSSQD--SVSTVYKCMMRGAADYLVKPV---------RRNELRNLWQHVW 151 (603)
Q Consensus 110 VImlSa~~--d~~~~~~al~~GA~DyL~KP~---------~~~eL~~~L~~v~ 151 (603)
||++++.. ......++++.|+.+||.||+ ..++|...|+.+.
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 99999875 356778999999999999999 4455666665554
No 63
>PRK13435 response regulator; Provisional
Probab=99.46 E-value=1.5e-12 Score=119.36 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=102.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~ 107 (603)
++++|||+|+++..+..+...|...||.++ .+.++.++++.+.... |||||+|+.|+ +.+|+++++.++.. +.
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~dliivd~~~~~~~~~~~~~~~l~~~---~~ 78 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQ--PDVALVDVHLADGPTGVEVARRLSAD---GG 78 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcC--CCEEEEeeecCCCCcHHHHHHHHHhC---CC
Confidence 357999999999999999999998899877 6899999999887544 99999999998 58999999999653 47
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
+|||+++...+. ..++..|+++||.||++..+|...|++++.+...
T Consensus 79 ~pii~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 79 VEVVFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred CCEEEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcc
Confidence 899999986542 4678899999999999999999999998766543
No 64
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.46 E-value=1.2e-12 Score=122.88 Aligned_cols=119 Identities=24% Similarity=0.396 Sum_probs=108.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|...||.+..+.++.++++.+.... ||+||+|+.||+++|+++++.|+.. .+.+|||
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~ii~d~~~~~~~~~~~~~~l~~~--~~~~~ii 79 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLR--FGCVVTDVRMPGIDGIELLRRLKAR--GSPLPVI 79 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCC--CCEEEEeCCCCCCcHHHHHHHHHhc--CCCCCEE
Confidence 68999999999999999999999999999999999999887654 9999999999999999999999864 3689999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+++...+......++..|+.+|+.||+...+|...+..++.+.
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888877653
No 65
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.45 E-value=2.5e-12 Score=122.37 Aligned_cols=120 Identities=23% Similarity=0.339 Sum_probs=106.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRK-SSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
+.++||||||++..+..+...|.. .++.++ .+.++.+++..+.... ||+||+|+.||+++|+++++.++... +.
T Consensus 5 ~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~~~~~~~~l~~~~--~~ 80 (215)
T PRK10403 5 TPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLD--PDVILLDLNMKGMSGLDTLNALRRDG--VT 80 (215)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 457999999999999999999975 578775 5889999999887654 99999999999999999999998643 57
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
+|+|+++...+......++..|+++||.||++..+|...++.+..+
T Consensus 81 ~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 81 AQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred CeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 8999999999988999999999999999999999999999988654
No 66
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.44 E-value=2e-12 Score=137.41 Aligned_cols=105 Identities=30% Similarity=0.547 Sum_probs=92.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
++++||||||++..+..|..+|... ++.++ .+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~--~- 76 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLR--P- 76 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhC--C-
Confidence 3579999999999999999999876 88877 7899999999987654 99999999999999999999998754 3
Q ss_pred CeEEEEecCC--CHHHHHHHHHcCCcEEEeCCCC
Q 007462 108 IPVIMMSSQD--SVSTVYKCMMRGAADYLVKPVR 139 (603)
Q Consensus 108 IPVImlSa~~--d~~~~~~al~~GA~DyL~KP~~ 139 (603)
+|||++++.. ......+++..|++|||.||+.
T Consensus 77 ~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 8999999764 4566789999999999999994
No 67
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.42 E-value=5.7e-12 Score=118.76 Aligned_cols=119 Identities=16% Similarity=0.351 Sum_probs=105.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
.++||||||++..+..+..+|... ++.++ .+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~ 78 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLE--PDIVILDLGLPGMNGLDVIPQLHQRW--PAM 78 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHC--CCC
Confidence 378999999999999999999875 56654 6889999998887654 99999999999999999999998643 678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||++++..+......++..|+.+||.||+...+|...+..+..+
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 79 NILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred cEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999887654
No 68
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.41 E-value=1.5e-12 Score=138.08 Aligned_cols=104 Identities=27% Similarity=0.500 Sum_probs=92.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSS-YR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~G-y~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++||||||....|..|+++|...+ ++ |..+.|+.+|++.+.... ||+|++|+.||.|||+++|+.|+.. ..+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~---~p~ 75 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRL---RPL 75 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcC---CCC
Confidence 3799999999999999999999888 55 556889999999998765 9999999999999999999999765 479
Q ss_pred eEEEEecCC--CHHHHHHHHHcCCcEEEeCCCC
Q 007462 109 PVIMMSSQD--SVSTVYKCMMRGAADYLVKPVR 139 (603)
Q Consensus 109 PVImlSa~~--d~~~~~~al~~GA~DyL~KP~~ 139 (603)
||||+|+.. ..+...+|+++||.||+.||..
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 999999854 4678889999999999999985
No 69
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.40 E-value=2.2e-12 Score=147.22 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=105.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|...||.|..+.++.+|+..+.... |||||+|+.||+++|+++++.|+.. .+.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~--~Dlvl~d~~lp~~~g~~~l~~l~~~--~~~~pi 82 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE--IDCVVADHEPDGFDGLALLEAVRQT--TAVPPV 82 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC--CCEEEEeccCCCCcHHHHHHHHHhc--CCCCCE
Confidence 369999999999999999999989999999999999999987654 9999999999999999999999764 368999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHH--HHHHHHHHHHHh
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRN--ELRNLWQHVWRR 153 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~--eL~~~L~~v~rr 153 (603)
|++|+..+...+.+++..|+.+||.||.... .|..+++.++..
T Consensus 83 I~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 83 VVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999997643 566666655543
No 70
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.40 E-value=8.3e-12 Score=119.13 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=106.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+||||||++..+..+..+|... ++.++ .+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~--~~~ 81 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKS--LSG 81 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhC--CCC
Confidence 469999999999999999999764 56654 5889999999987654 99999999999999999999998643 678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|||+++...+......++..|+++||.||++..+|...+..++++.
T Consensus 82 ~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 82 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999887653
No 71
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.39 E-value=4.6e-12 Score=126.87 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=96.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH-HHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL-TLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL-r~Lr~~~~~~~I 108 (603)
..+|+||||++.++..|+.+|.. ++. +..+.++.+|+..+. .|||||+|+.||+++|++++ +.|+.. .+.+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~--~p~~ 82 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRK--NNNI 82 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHh--CCCC
Confidence 36799999999999999999984 454 445789999988753 28999999999999999997 557654 3789
Q ss_pred eEEEEecCCCHHHHHHHHH--cCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 109 PVIMMSSQDSVSTVYKCMM--RGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~--~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
+||++|+..+. ...++. .||.+||.|+.+.++|..+|+.+..+...
T Consensus 83 ~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~ 130 (216)
T PRK10100 83 KILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECY 130 (216)
T ss_pred cEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcc
Confidence 99999998773 345555 59999999999999999999999876543
No 72
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.36 E-value=8.2e-12 Score=124.34 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=91.7
Q ss_pred HHHHHHHHHh---CCCEEEEECCHHHHHHHHhcCCCCceEEE---EeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 007462 44 RQIVTALLRK---SSYRVTAVPDGLKAWEVLKGRPRNIDLIL---TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (603)
Q Consensus 44 r~lL~~lL~~---~Gy~V~~A~dg~eALe~L~~~~~~pDLVL---lDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~ 117 (603)
|..+..+|.. .||.|..+.++.++++.+.... ||+|| +|+.||+++|++++++|+.. .+.+|||++|+++
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~--pd~vl~dl~d~~mp~~~Gl~~~~~l~~~--~p~~~iIvlt~~~ 78 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRIS--FSAVIFSLSAMRSERREGLSCLTELAIK--FPRMRRLVIADDD 78 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCC--CCEEEeeccccCCCCCCHHHHHHHHHHH--CCCCCEEEEeCCC
Confidence 6678888864 3556678999999999987654 89998 68889999999999999864 4789999999988
Q ss_pred CHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 118 SVSTVYKCM-MRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 118 d~~~~~~al-~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
+...+..++ ..||.+||.||+..++|..+|+.++.+..
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 777666666 79999999999999999999999987654
No 73
>PRK09191 two-component response regulator; Provisional
Probab=99.36 E-value=1.9e-11 Score=122.60 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=101.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICK 106 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~ 106 (603)
.+..+||||||++..+..+...|+..|+.+. .+.++.++++.+.... ||+||+|+.||+ ++|+++++.++...
T Consensus 135 ~~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~--~dlvi~d~~~~~~~~g~e~l~~l~~~~--- 209 (261)
T PRK09191 135 QVATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTR--PGLILADIQLADGSSGIDAVNDILKTF--- 209 (261)
T ss_pred cCCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccC--CCEEEEecCCCCCCCHHHHHHHHHHhC---
Confidence 3467999999999999999999998899887 6889999999987654 999999999995 89999999997643
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+|||++|+..+.... +...|+.+||.||++.++|...|++++...
T Consensus 210 ~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 210 DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 7899999998765543 345678899999999999999998876543
No 74
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.34 E-value=2.7e-11 Score=120.30 Aligned_cols=120 Identities=10% Similarity=0.130 Sum_probs=99.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC--E-EEEECCHHHHHHHHhcCCCCceEEEEeCC--CCCCCHHHHHHHHHhcccCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSY--R-VTAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy--~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~--MPgmDGleLLr~Lr~~~~~~ 106 (603)
+.||||||++.++..++.+|...++ . |..+.++.+++..+.... |||||+|+. ||+.+|++++++|++. .+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~--pDlvLlDl~~~l~~~~g~~~i~~i~~~--~p 76 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLR--PSVVFINEDCFIHDASNSQRIKQIINQ--HP 76 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccC--CCEEEEeCcccCCCCChHHHHHHHHHH--CC
Confidence 4689999999999999999986553 3 446889999999887654 999999976 8888999999999764 37
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcE-EEeCCCCHHHHHHHHHHHHHhccc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAAD-YLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~D-yL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
.++||++|+..+..... ++..|+.. |+.|+...++|..+|+.+..+...
T Consensus 77 ~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~ 126 (207)
T PRK15411 77 NTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETT 126 (207)
T ss_pred CCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcc
Confidence 89999999998776543 55556554 889999999999999999876543
No 75
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.30 E-value=1.7e-11 Score=119.71 Aligned_cols=121 Identities=23% Similarity=0.362 Sum_probs=103.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
.|.++||++||++..+-.+...|...||+++. +.++.++.+...... ||+||+|+.||..|-++-+....+ ...
T Consensus 3 ~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~---~~~ 77 (194)
T COG3707 3 AMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASE---NVA 77 (194)
T ss_pred ccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhc---CCC
Confidence 46789999999999999999999999997654 678999988888765 999999999999995444444432 246
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.|||++|++++...+.++++.||.+||+||++...|+..|.-+..+.
T Consensus 78 ~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 78 RPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred CCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 79999999999999999999999999999999999998887666554
No 76
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.28 E-value=5.4e-11 Score=139.84 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=107.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+...|...||+|+.+.++.+|++.+......||+||+ .||+++|+++++.|+.. .+.+|||
T Consensus 698 ~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~--~~~ipII 773 (828)
T PRK13837 698 ETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAA--APTLPII 773 (828)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhh--CCCCCEE
Confidence 5899999999999999999999999999999999999999754334799999 79999999999999764 3789999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++........+++..| ++||.||++..+|..+|.+++++.
T Consensus 774 vls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 774 LGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 999999999999999999 999999999999999999887654
No 77
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.28 E-value=1e-10 Score=95.11 Aligned_cols=112 Identities=29% Similarity=0.523 Sum_probs=100.6
Q ss_pred EEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 35 LLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 35 LLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
||+++++..+..+...|...|+.+..+.+..+++..+.... +|+||+|+.++..+|+++++.++.. .+.+|+|+++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ii~~~~~~~~~~~~~~~~l~~~--~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK--PDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCC--CCEEEEecCCCCCchHHHHHHHHHh--CCCCCEEEEE
Confidence 57899999999999999988999988999999999887654 9999999999999999999999765 3678999999
Q ss_pred cCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 115 SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
..........++..|+.+|+.||+...+|...++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 888888888999999999999999999998887653
No 78
>PRK13557 histidine kinase; Provisional
Probab=99.18 E-value=3.2e-10 Score=124.04 Aligned_cols=120 Identities=23% Similarity=0.346 Sum_probs=107.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IP 109 (603)
..+||||+|++..+..+..+|...||.+..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|+... +.+|
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~--~~~~ 491 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQ--PKIK 491 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhC--CCCc
Confidence 45899999999999999999999999999999999999998643 14999999999997 99999999998643 6789
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||+++..........++..|+.+||.||++.++|...+..++..
T Consensus 492 ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 492 VLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 99999999888888899999999999999999999999887654
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.15 E-value=2.7e-10 Score=119.21 Aligned_cols=91 Identities=25% Similarity=0.476 Sum_probs=81.1
Q ss_pred EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCC-
Q 007462 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV- 138 (603)
Q Consensus 60 ~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~- 138 (603)
.+.++.+|++.+.... ||+||+|+.||+++|++++++|+.. .+.+|||++|+..+.+.+.++++.||+|||.||+
T Consensus 2 ~a~~g~~al~~l~~~~--pDlVL~D~~mp~~~Gle~~~~ir~~--~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGGFT--PDLIICDLAMPRMNGIEFVEHLRNR--GDQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhc--CCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 4678999999998754 9999999999999999999999865 3679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 007462 139 RRNELRNLWQHVWRRQ 154 (603)
Q Consensus 139 ~~~eL~~~L~~v~rr~ 154 (603)
+.++|...|.++++..
T Consensus 78 ~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 78 DLNRLREMVFACLYPS 93 (303)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 5899999888776543
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.99 E-value=2.3e-09 Score=109.40 Aligned_cols=117 Identities=21% Similarity=0.443 Sum_probs=99.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++|++|||++..+..|..++... .+++. .+.++.++++.++.. .+|++|+|+.||+++|+++...|+... +..
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~--~~~ 76 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGD--PRP 76 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccC--CCC
Confidence 379999999999999999999842 33333 588999999999876 499999999999999999999998753 567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
+||++|+++ +.+..+++..|.|||.||+..+.|...+.+..+.
T Consensus 77 ~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 77 AIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred eEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 899999976 4555777999999999999999999999876554
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.99 E-value=3.8e-09 Score=122.59 Aligned_cols=118 Identities=13% Similarity=0.188 Sum_probs=91.9
Q ss_pred EEEEEecCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHH----HHHHHHH
Q 007462 33 RVLLVEADDS--------TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF----ALLTLVM 100 (603)
Q Consensus 33 rVLLVDDD~~--------~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGl----eLLr~Lr 100 (603)
+|||||||.. .+..|...|+..||+|..+.++.+|+..+... ..||+||+|++||+++|+ ++|+.||
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~IR 80 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHHH
Confidence 7999999995 79999999999999999999999999999762 149999999999999997 8999998
Q ss_pred hcccCCCCeEEEEecCCC--HHHHHHHHHcCCcEEEeCCCCHHHH-HHHHHHHHHhc
Q 007462 101 EHEICKNIPVIMMSSQDS--VSTVYKCMMRGAADYLVKPVRRNEL-RNLWQHVWRRQ 154 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d--~~~~~~al~~GA~DyL~KP~~~~eL-~~~L~~v~rr~ 154 (603)
.. ..++||||+|+..+ ...-.. .-.-+++|+.+--+..++ ...|....++.
T Consensus 81 ~~--~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 134 (755)
T PRK15029 81 ER--QQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_pred hh--CCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHHHHHHHHHHHHHH
Confidence 64 36899999999986 333222 223367888776554444 34455554443
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.37 E-value=3.7e-06 Score=99.14 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=95.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||||||++..+..+..+|..+|+.|..+.++.+ +... .||++|+|+.||++++...+............++
T Consensus 536 g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~~--~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (919)
T PRK11107 536 GKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPEA--HYDILLLGLPVTFREPLTMLHERLAKAKSMTDFL 609 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hccC--CCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcE
Confidence 369999999999999999999999999999988887 3333 4999999999999887766655543333334578
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
|+++..........+...|+++||.||+...+|...+....
T Consensus 610 i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 610 ILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred EEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 88888888888899999999999999999999998887654
No 83
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.10 E-value=2.9e-06 Score=93.16 Aligned_cols=92 Identities=26% Similarity=0.373 Sum_probs=80.5
Q ss_pred CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 56 YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 56 y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
|+|..+..|.+|+..+.... ||++|+|++||+|+|+++++.+++... .|||+|..++...-.+.++.|+++||.
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~----~~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCc----ceEEEEecCCCCcchhHHhhhhhhhcc
Confidence 46777999999999998765 999999999999999999999987643 389999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 007462 136 KPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 136 KP~~~~eL~~~L~~v~rr 153 (603)
||+....+......+.+.
T Consensus 87 ~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred CCCChHHHHHhhhhhccc
Confidence 999999888777665543
No 84
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.91 E-value=7.5e-05 Score=67.43 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=77.3
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVIm 112 (603)
||||||||...|..|..+|+-.|+++..+....- ........ ++.+++-+.-.. ...++++.|.+. .+++|||+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~-~~~~~l~~l~~~--~~~~Pvll 74 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS-KLAELLKELLKW--APHIPVLL 74 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch-hHHHHHHHHHhh--CCCCCEEE
Confidence 6999999999999999999999999888765332 23333322 555544433333 567788888654 47999999
Q ss_pred EecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 113 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
+......... ..+.+-|..|++..+|..+|+++
T Consensus 75 lg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 75 LGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 9987766211 12666789999999999998865
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.65 E-value=0.00035 Score=49.02 Aligned_cols=55 Identities=38% Similarity=0.660 Sum_probs=48.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP 88 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MP 88 (603)
++|+++++++..+..+...|...|+++..+.+..+++..+.... +|+|++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEK--PDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCC
Confidence 37999999999999999999999999988999999999887544 99999998664
No 86
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.35 E-value=0.1 Score=47.67 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=79.8
Q ss_pred EEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcc
Q 007462 33 RVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHE 103 (603)
Q Consensus 33 rVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPgmD--GleLLr~Lr~~~ 103 (603)
|||+. |.+..=..++..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..++..- --++++.|++..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 667777778888899999998873 35677778887755 99999988776422 346677776643
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
+.-+.|++.+....+...+..++|++.|+..--..++....|+
T Consensus 79 --~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 --AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred --CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 2234455665555666778889999999998888877765543
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.99 E-value=0.29 Score=46.13 Aligned_cols=117 Identities=12% Similarity=0.017 Sum_probs=88.1
Q ss_pred CEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCCC--CHHHHHHHHHhc
Q 007462 32 LRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSI--SGFALLTLVMEH 102 (603)
Q Consensus 32 lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPgm--DGleLLr~Lr~~ 102 (603)
.+||+. |.+..=..++..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..|... ...+++++|++.
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 477777 888888888999999999998873 35677778887755 9999998877753 356777888765
Q ss_pred ccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 103 EICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 103 ~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
. .++++|++ .+.. ..+...++.++|++.+....-..++....|++.+.
T Consensus 82 ~-~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 G-LGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred C-CCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3 24565553 3332 45556788899999999988999999888887654
No 88
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.80 E-value=0.093 Score=47.72 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEEEecCCCHHH
Q 007462 44 RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIMMSSQDSVST 121 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg--mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~ 121 (603)
...|...|...|++|+.+.+..+|+..++... .++.||+++. ++ ....++|+.|+... .++||.+++.....+.
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~~~~~ 81 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERDTTED 81 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCCHHHC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCCCccc
Confidence 34566777778999999999999999999765 6899999986 22 23568889998755 7899999998775555
Q ss_pred HHHHHHcCCcEEEeCCCCHHHH-HHHHHHHH
Q 007462 122 VYKCMMRGAADYLVKPVRRNEL-RNLWQHVW 151 (603)
Q Consensus 122 ~~~al~~GA~DyL~KP~~~~eL-~~~L~~v~ 151 (603)
+-..+-..+++|+...-+..++ ...|..+.
T Consensus 82 l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa 112 (115)
T PF03709_consen 82 LPAEVLGEVDGFIWLFEDTAEFIARRIEAAA 112 (115)
T ss_dssp CCHHHHCCESEEEETTTTTHHHHHHHHHHHH
T ss_pred CCHHHHhhccEEEEecCCCHHHHHHHHHHHH
Confidence 5555556688999876654444 44555443
No 89
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.36 E-value=0.016 Score=69.71 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=41.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL 87 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~M 87 (603)
..+||||||++.++..+..+|+.+|++|+.+.++. .. ..|||||+|..+
T Consensus 689 g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~------~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 689 GVTVLLDITSEEVRKIVTRQLENWGATCITPDERL------IS--QEYDIFLTDNPS 737 (894)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc------cC--CCCCEEEECCCC
Confidence 36999999999999999999999999999887642 22 349999999884
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.21 E-value=0.27 Score=44.25 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=65.3
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCC-CCeEE
Q 007462 38 EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICK-NIPVI 111 (603)
Q Consensus 38 DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg--mDGleLLr~Lr~~~~~~-~IPVI 111 (603)
|.+..=..++..+|+..||+|+.. ...++.++.+.+.. ||+|.+-..+.. ....++++.+++.. + +++|+
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~--~~~~~i~ 85 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAG--LDDIPVL 85 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcC--CCCCeEE
Confidence 566677788999999999998763 25667778877655 999999877554 34577888887653 4 55544
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEe
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+.+..-......+...|++.|+.
T Consensus 86 -vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 86 -VGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred -EECCCCChhHHHHHHcCCeEEEC
Confidence 55544333335678899977775
No 91
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.92 E-value=0.72 Score=43.20 Aligned_cols=110 Identities=7% Similarity=-0.031 Sum_probs=78.3
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEE
Q 007462 38 EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 38 DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~~~~~~~IPVIm 112 (603)
|-+..-..++..+|+..||+|+.. .+.++.++.+.+.. +|+|.+-..+.. +. --++++.|++... ..++ |+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~g~-~~i~-vi 88 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKLGR-PDIL-VV 88 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhcCC-CCCE-EE
Confidence 567777888999999999998873 47888888887755 899988665532 22 2355666765432 2344 44
Q ss_pred EecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 113 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+-+....+......++|+++|+..--+..+....+...+
T Consensus 89 vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 89 VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 555445556677889999999998888888887776644
No 92
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=94.73 E-value=0.013 Score=58.49 Aligned_cols=108 Identities=23% Similarity=0.293 Sum_probs=68.7
Q ss_pred EEEecCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 35 LLVEADDSTRQIVTALLRKSSY----RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 35 LLVDDD~~~r~lL~~lL~~~Gy----~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+.+|++...+.++..++...-+ ....+....+....... ..+|+++.++.||++.++.++..+.......++|+
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcccc--ccccccccccccccccccccccccccCCCCCCCCc
Confidence 6777776666666666554321 12222222111111111 34899999999999999999988865444566777
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHH
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~ 144 (603)
+++............+..++.+|+.+|....++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 130 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLK 130 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCcc
Confidence 7777766666677777777888888888744333
No 93
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=94.66 E-value=0.017 Score=39.62 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccchh
Q 007462 538 SIQREAALNKFRLKRKDRCYDKKVRYE 564 (603)
Q Consensus 538 ~~~r~~~~~r~~~k~~~r~~~k~~ry~ 564 (603)
+..|.++|.||-||||.|.+. +.-|.
T Consensus 1 P~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 1 PIARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp -----HHHHHHHHHH------------
T ss_pred CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 357999999999999999988 55663
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.65 E-value=0.56 Score=55.31 Aligned_cols=117 Identities=9% Similarity=0.104 Sum_probs=77.2
Q ss_pred CEEEEEecCH-HH-----HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 32 LRVLLVEADD-ST-----RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 32 lrVLLVDDD~-~~-----r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
++||||+++- .. ...|..-|+..||+|+.+.+..+++..++... .++.||+++.-. ..+++..|+...
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~-- 74 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNP-RICGVIFDWDEY---SLDLCSDINQLN-- 74 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhccc-ceeEEEEecccc---hHHHHHHHHHhC--
Confidence 4788888774 11 34556667788999999999999999998543 689999995332 356888887655
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCC-HHHHHHHHHHHHHhc
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR-RNELRNLWQHVWRRQ 154 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~-~~eL~~~L~~v~rr~ 154 (603)
.++||+++........+....-.-+++|+.---. .+.....|....++.
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEY 124 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHH
Confidence 6899999887553333333333446666654333 334444455554443
No 95
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=93.53 E-value=0.31 Score=51.54 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=56.2
Q ss_pred CCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe-cCCCHHHHHHHHHcCCcEE
Q 007462 55 SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS-SQDSVSTVYKCMMRGAADY 133 (603)
Q Consensus 55 Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS-a~~d~~~~~~al~~GA~Dy 133 (603)
|.+++.+.+..++-.... .-.+||+|..+-. .++..+ .. +...||++. ...+......++..||.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~~~~--~p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~ 68 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMAE----ACAAAG--LP--RRRRVVLVGGGEPGGALWRAAAAVGAEHV 68 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhhh----HHHhcc--CC--CCCCEEEEeCCCCCHHHHHHHHHhChhhe
Confidence 455666666665544332 2578999864311 111221 11 233455444 4668999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 007462 134 LVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 134 L~KP~~~~eL~~~L~~v~ 151 (603)
|.+|+...+|..++.++.
T Consensus 69 l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 69 AVLPEAEGWLVELLADLD 86 (322)
T ss_pred eeCCCCHHHHHHHHHhhc
Confidence 999999999999998763
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.93 E-value=0.82 Score=53.96 Aligned_cols=117 Identities=9% Similarity=0.135 Sum_probs=75.3
Q ss_pred CEEEEEecCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 32 LRVLLVEADD-S-----TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 32 lrVLLVDDD~-~-----~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
|+||||+++. . -...|..-|++.||+|+.+.+..+++..++... .++.||+|+.- . ..+++..|+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~-- 74 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDK--Y-NLELCEEISKMN-- 74 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccc-ceeEEEEecch--h-hHHHHHHHHHhC--
Confidence 4678887763 1 134556667788999999999999999988543 68999999532 2 255888887654
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHhc
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 154 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~-~~~eL~~~L~~v~rr~ 154 (603)
.++||+++........+....-.-+++|+.--- +.+.....|.+..++.
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (714)
T PRK15400 75 ENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEY 124 (714)
T ss_pred CCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHH
Confidence 689999988754333222223333556665332 3444444455554443
No 97
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.37 E-value=3.8 Score=38.72 Aligned_cols=108 Identities=8% Similarity=0.001 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHhcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcccCCCCeEEEEe
Q 007462 40 DDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 40 D~~~r~lL~~lL~~~Gy~V~~---A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD--GleLLr~Lr~~~~~~~IPVImlS 114 (603)
+..=..++..+|+..||+|+. ....++.++.+.+.. +|+|-+-..|...- --++.+.|++... .++ +|++-
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl-~~~-~vivG 89 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGL-EGI-LLYVG 89 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCC-CCC-EEEec
Confidence 445567788999999999987 347788888887765 99999877665422 3456667766543 344 45565
Q ss_pred cCC-----CHH-HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 115 SQD-----SVS-TVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 115 a~~-----d~~-~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+.. +.. ...++.++|++..+...-..+++...|++.+
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 531 221 2446889999999988888899888887654
No 98
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=92.18 E-value=1.9 Score=42.86 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=71.4
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE--C-CHHHHHHHHhcCCCCceEEEEeCCCCCC--CHHHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV--P-DGLKAWEVLKGRPRNIDLILTEVDLPSI--SGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A--~-dg~eALe~L~~~~~~pDLVLlDl~MPgm--DGleLLr~Lr~ 101 (603)
..+||+. |-+..=..++..+|+..||+|+.. . ..++.++.+.+.. ||+|.+-..|... ...++++.|++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 3578887 777777889999999999998853 2 5677778887655 9999998877653 35677788877
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.....+++|++--..-..+ -+-..||+.|-.
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAE 190 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEEC
Confidence 5433367766555444443 456679988875
No 99
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.31 E-value=1.7 Score=45.08 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=73.5
Q ss_pred CEEEEEecCHHHHHHHHHHH------HhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCC---------CCCHHH
Q 007462 32 LRVLLVEADDSTRQIVTALL------RKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP---------SISGFA 94 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL------~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MP---------gmDGle 94 (603)
+++=|+.|+....--+...+ -+.||.|. ++.|...|-++.+- . +++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~-G--~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA-G--CAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-C--CCEe-----CCCCcCCCCCCCCCCHH
Confidence 57777776653333333322 24599876 46677777666654 2 7777 77 222268
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHH
Q 007462 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVW 151 (603)
Q Consensus 95 LLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~-----KP~~~~eL~~~L~~v~ 151 (603)
+++.|++. .++|||+=.+....+.+.+|+++||+..++ |.-++..+...+...+
T Consensus 166 ~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 166 NLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred HHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 88888764 379999988899999999999999999975 4444555555555444
No 100
>PRK00208 thiG thiazole synthase; Reviewed
Probab=90.60 E-value=1.3 Score=45.80 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=74.0
Q ss_pred CEEEEEecCHHHHHHHHHH------HHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCC---------CCCHHH
Q 007462 32 LRVLLVEADDSTRQIVTAL------LRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP---------SISGFA 94 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~l------L~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MP---------gmDGle 94 (603)
+++=|+.|+....--+... |-+.||.|. ++.|...|-++.+- . +|+| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~-G--~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA-G--CAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-C--CCEe-----CCCCcCCCCCCCCCCHH
Confidence 6777777765333333222 224599876 46677777666654 2 7877 77 222257
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHH
Q 007462 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVW 151 (603)
Q Consensus 95 LLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~-----KP~~~~eL~~~L~~v~ 151 (603)
+++.|++. .++|||+=.+....+.+.+++++|++..|+ |.-++..+...+...+
T Consensus 166 ~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 166 NLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred HHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 88888764 379999999999999999999999999975 4445556555555444
No 101
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=89.66 E-value=3.2 Score=41.88 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCCC-C-CHHHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MPg-m-DGleLLr~Lr~ 101 (603)
..+|||. |.+..=..++..+|+..||+|+... ..++.++.+.+.. ||+|.+-..|+. + .-.+++++|++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHHh
Confidence 3588888 7888888889999999999998732 5677778887755 999999988875 2 34577788876
Q ss_pred cccCCCCeEEEEecCCCHHHHHH---HHHcCCcEEEeCC
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYK---CMMRGAADYLVKP 137 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~---al~~GA~DyL~KP 137 (603)
.. .+++|++--+.-+.+.... +-..||+.|-.-.
T Consensus 166 ~~--~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 166 RG--IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred cC--CCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 53 4777776555545554432 2457998886533
No 102
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=88.32 E-value=4 Score=40.54 Aligned_cols=99 Identities=13% Similarity=0.064 Sum_probs=66.8
Q ss_pred CEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCCC-C-HHHHHHHHHhc
Q 007462 32 LRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSI-S-GFALLTLVMEH 102 (603)
Q Consensus 32 lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPgm-D-GleLLr~Lr~~ 102 (603)
-+||+. |.+..=..++..+|+..||+|+.. ...++.++.+++.. ||+|.+-+.|+.. . -.++++.|++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 466554 445666677888899999999863 25677778887755 9999999877653 2 35677788776
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
...++++|++=-..-... -+...||+.|-.
T Consensus 163 ~~~~~v~i~vGG~~~~~~---~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFMVGGAPVTQD---WADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEEEEChhcCHH---HHHHhCCcEEeC
Confidence 444456666544333332 355779998864
No 103
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=88.27 E-value=13 Score=34.91 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEEEe
Q 007462 40 DDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 40 D~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~~~~~~~IPVImlS 114 (603)
+..=..++..+|+..||+|+.. ...++.++...+.. +|+|.+-..|.. +. .-++++.|++... .+++|| +-
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl-~~v~vi-vG 87 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGL-KDILLY-VG 87 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCC-CCCeEE-EE
Confidence 4445578888999999999863 46777888877654 999998776664 33 3467777776543 355554 44
Q ss_pred cCC-----C-HHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007462 115 SQD-----S-VSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 115 a~~-----d-~~~~~~al~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
+.. + .+...+..++|++..+...-.++++...|.
T Consensus 88 G~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 331 1 334466888999999988778887766553
No 104
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=87.66 E-value=4.8 Score=41.83 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=79.9
Q ss_pred Cccccchhhhhhhcc---------CCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhC-CCEEE------EECCHH
Q 007462 2 GDVVLNDEELKEMNG---------NEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKS-SYRVT------AVPDGL 65 (603)
Q Consensus 2 ~~~~~~~~~~~~~~~---------~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~------~A~dg~ 65 (603)
|.++|+.+|++.|.. .+++|-- .|=.|.......++.++... ++.++ .+.+..
T Consensus 63 gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G-----------~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~ 131 (248)
T PRK11572 63 GDFCYSDGEFAAMLEDIATVRELGFPGLVTG-----------VLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPL 131 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEe-----------eECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHH
Confidence 778999999999872 2332211 12234456677777777654 34443 256999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 66 KAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+||+.|.+.. +|=||+-=.-+ -.+|++.|++|.+.. .. .+||.-+--..+.+.+....|+..|-
T Consensus 132 ~al~~l~~lG--~~rILTSGg~~~a~~g~~~L~~lv~~a--~~-~~Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 132 NALKQLADLG--VARILTSGQQQDAEQGLSLIMELIAAS--DG-PIIMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred HHHHHHHHcC--CCEEECCCCCCCHHHHHHHHHHHHHhc--CC-CEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 9999998765 99999865555 378999999997643 23 34666666667777666789998886
No 105
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.21 E-value=13 Score=36.33 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=51.6
Q ss_pred ECCHHHHHHHHhcCCCCceEEEEeCCCCCC--------CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcE
Q 007462 61 VPDGLKAWEVLKGRPRNIDLILTEVDLPSI--------SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (603)
Q Consensus 61 A~dg~eALe~L~~~~~~pDLVLlDl~MPgm--------DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~D 132 (603)
+.+..++.+.+.. .+|+|.+.-..|.. .|++.++++++.. +++||++..+- +.+.+..++..||+.
T Consensus 111 ~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI-~~~~i~~~~~~Ga~g 184 (212)
T PRK00043 111 THTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--GDIPIVAIGGI-TPENAPEVLEAGADG 184 (212)
T ss_pred CCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 5566777777653 38999987655543 3688899987642 45899888776 578888999999999
Q ss_pred EEe
Q 007462 133 YLV 135 (603)
Q Consensus 133 yL~ 135 (603)
+.+
T Consensus 185 v~~ 187 (212)
T PRK00043 185 VAV 187 (212)
T ss_pred EEE
Confidence 975
No 106
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=87.05 E-value=5.9 Score=35.19 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeC-CCCCC-CHHHHHHHHHhcccCCCCeEEEEe
Q 007462 40 DDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEV-DLPSI-SGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 40 D~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl-~MPgm-DGleLLr~Lr~~~~~~~IPVImlS 114 (603)
.+.-...+..+|++.||+|... .+.++..+.+.+.. ||+|.+-. ..+.. ...++++.+++. .++++||+=-
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~--~p~~~iv~GG 88 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKER--NPNIPIVVGG 88 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTT--CTTSEEEEEE
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhc--CCCCEEEEEC
Confidence 4566788999999999998765 24567777777654 99999988 44444 356777776553 3666666544
Q ss_pred cCCCHHHHHHHHH--cCCcEEEeC
Q 007462 115 SQDSVSTVYKCMM--RGAADYLVK 136 (603)
Q Consensus 115 a~~d~~~~~~al~--~GA~DyL~K 136 (603)
.+. ...-..+++ .|++..+.-
T Consensus 89 ~~~-t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 89 PHA-TADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SSS-GHHHHHHHHHHHTSEEEEEE
T ss_pred Cch-hcChHHHhccCcCcceecCC
Confidence 443 333344454 677665543
No 107
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.03 E-value=12 Score=33.01 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=64.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHh-CCCEEEE-EC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRK-SSYRVTA-VP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~-A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+||.||.--..-+..+..++.. .+++++. +. +...+-...+... +. ++.| ++.+-... ..++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~--~~-~~~~-----------~~~ll~~~-~~D~ 65 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG--IP-VYTD-----------LEELLADE-DVDA 65 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT--SE-EESS-----------HHHHHHHT-TESE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc--cc-chhH-----------HHHHHHhh-cCCE
Confidence 4677777777777777777766 5666654 33 3333333333322 34 4444 23332221 1233
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
-+|........+.+..+++.|..=|+-||+ +.+++..+++.+-+.
T Consensus 66 V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 66 VIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 333333345778889999999999999999 788888887765443
No 108
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=85.53 E-value=6.4 Score=38.75 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=59.2
Q ss_pred CccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCE---EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH---
Q 007462 19 GIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYR---VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG--- 92 (603)
Q Consensus 19 ~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~---V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG--- 92 (603)
|.+.-| ++.+-.-+|.+||-++.....|+.-++.++.. .+...|...++..+......+|||++| -|-..+
T Consensus 54 GalGlE-ALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD--PPY~~~~~~ 130 (183)
T PF03602_consen 54 GALGLE-ALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD--PPYAKGLYY 130 (183)
T ss_dssp SHHHHH-HHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHH
T ss_pred CccHHH-HHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC--CCcccchHH
Confidence 455555 45566679999999999999999999988753 344678888887774333459999999 344333
Q ss_pred HHHHHHHHhcccCCCCeEEEE
Q 007462 93 FALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVIml 113 (603)
.+++..|........-.+|++
T Consensus 131 ~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 131 EELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHHHHHHHHTTSEEEEEEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEE
Confidence 568888865444333344443
No 109
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.14 E-value=12 Score=37.37 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=59.1
Q ss_pred HHHHHHHh-CCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCC-------CCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 46 IVTALLRK-SSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVD-------LPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 46 lL~~lL~~-~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~-------MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
.+...+++ .++.+. .+.+.+++...... .+|+|.+... ......++++++|+..- ++|||...+.
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~iPvia~GGI 182 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---GCPVIAEGRI 182 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---CCCEEEECCC
Confidence 34444455 566654 46788888665543 3788865321 12233578899987642 6899998888
Q ss_pred CCHHHHHHHHHcCCcEEEeC
Q 007462 117 DSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~K 136 (603)
.+.+.+.+++..||+.+++-
T Consensus 183 ~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 183 NTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 89999999999999998765
No 110
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=85.02 E-value=3.8 Score=38.16 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=71.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHH--HHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT--LVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr--~Lr~~~~~~~IP 109 (603)
.+.++||-+........++|..-+.+|+.-.... .+-. ..||++|+.+-.+-..-+.+-. ..+.-. -.-
T Consensus 12 k~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~---mtd 82 (140)
T COG4999 12 KRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----ALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALS---MTD 82 (140)
T ss_pred ceeEEecCccHHHHHHHHHHhcCCceEEeccccc----ccCh--hhhceeeecccccccCCchHHHHHHHHHHh---hhc
Confidence 5889999999999999999999999988644322 2211 2499999999777654433322 111111 112
Q ss_pred EEEEec-CCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 007462 110 VIMMSS-QDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (603)
Q Consensus 110 VImlSa-~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L 147 (603)
.+|+.- ......+.+.+..|+.+.|.||++.-.|...+
T Consensus 83 ~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 83 FVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred ceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 233322 22344566778899999999999999888743
No 111
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=84.78 E-value=3 Score=41.65 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=52.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeC--CCCCCCH--HHHHHHHHhcccCCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV--DLPSISG--FALLTLVMEHEICKN 107 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl--~MPgmDG--leLLr~Lr~~~~~~~ 107 (603)
++|||||...++-..|.++|++.|.+|....+....++.++... ||+|++-= .-|.-.| +++++++ ..+
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~--pd~iviSPGPG~P~d~G~~~~~i~~~-----~~~ 74 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALK--PDAIVISPGPGTPKDAGISLELIRRF-----AGR 74 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcC--CCEEEEcCCCCChHHcchHHHHHHHh-----cCC
Confidence 68999999999999999999999988777655443344555433 89999864 2233222 4555544 246
Q ss_pred CeEEEEe
Q 007462 108 IPVIMMS 114 (603)
Q Consensus 108 IPVImlS 114 (603)
+||+-+.
T Consensus 75 ~PiLGVC 81 (191)
T COG0512 75 IPILGVC 81 (191)
T ss_pred CCEEEEC
Confidence 8998665
No 112
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.68 E-value=7.7 Score=33.96 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=56.2
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEE------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTAV------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~A------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
+||||...+.....++.++++.|+++... ......++..- ...|+||+=...-.-+-...+++.... .
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i---~~aD~VIv~t~~vsH~~~~~vk~~akk---~ 74 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI---KKADLVIVFTDYVSHNAMWKVKKAAKK---Y 74 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc---CCCCEEEEEeCCcChHHHHHHHHHHHH---c
Confidence 48999998889999999999999987777 22222233222 236998876655555555555555332 4
Q ss_pred CCeEEEEecCCCHHHHHHHH
Q 007462 107 NIPVIMMSSQDSVSTVYKCM 126 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al 126 (603)
++|+|+.-+.+ ...+.+++
T Consensus 75 ~ip~~~~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 75 GIPIIYSRSRG-VSSLERAL 93 (97)
T ss_pred CCcEEEECCCC-HHHHHHHH
Confidence 78998775433 33444443
No 113
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=83.08 E-value=29 Score=36.01 Aligned_cols=91 Identities=15% Similarity=0.015 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 41 DSTRQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 41 ~~~r~lL~~lL~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl---~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
+.....+.......|..+ +.+.+.+++...+.. .+|+|-+.- ..-..| ++.+.+|...- ...+++|..++-
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~-p~~~~vIaegGI 220 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLI-PSDRLVVSESGI 220 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhC-CCCCEEEEEeCC
Confidence 334444444455678874 458899888776653 378876531 122233 66666665431 124689999999
Q ss_pred CCHHHHHHHHHcCCcEEEeC
Q 007462 117 DSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~K 136 (603)
.+.+.+.+++.+|++.+++-
T Consensus 221 ~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999998754
No 114
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=82.89 E-value=24 Score=33.81 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=78.1
Q ss_pred CCEEEE----EecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHhcCCCCceEEEEeCCCCC-C-CHHHHHHHHHh
Q 007462 31 ALRVLL----VEADDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLL----VDDD~~~r~lL~~lL~~~Gy~V~~---A~dg~eALe~L~~~~~~pDLVLlDl~MPg-m-DGleLLr~Lr~ 101 (603)
..|||| .|-+..-...+..+|+..||+|+. ..+++|++...-+.. .|+|.+-..--+ + ..-++.+.|++
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~d--v~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEED--VDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcC--CCEEEEEeccchHHHHHHHHHHHHHH
Confidence 346655 577888889999999999999886 569999998775544 787776532221 1 13345556655
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
... .+|. +++-+....+...+..+.|++.++.--....+....+...
T Consensus 90 ~G~-~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 90 AGV-EDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred hCC-cceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 432 2333 4556666777777788899999998777776665544443
No 115
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=82.09 E-value=32 Score=36.04 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=69.6
Q ss_pred HHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHH-----HHHHHHHhcccCCCCeEEEEecCCCHH
Q 007462 48 TALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF-----ALLTLVMEHEICKNIPVIMMSSQDSVS 120 (603)
Q Consensus 48 ~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGl-----eLLr~Lr~~~~~~~IPVImlSa~~d~~ 120 (603)
.+.|-+.||.|.. ..|.--|.++.+.. -.+|+-+.-|-.+|. ..|+.|++. +++|||+=.+-...+
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~G----c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vpVivdAGIgt~s 202 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDIG----CATVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVIIDAGIGTPS 202 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHcC----CeEEeeccCcccCCCCCCCHHHHHHHHHc---CCCcEEEeCCcCCHH
Confidence 3445678999876 34666665555433 245666666644432 567777765 479999999999999
Q ss_pred HHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHHH
Q 007462 121 TVYKCMMRGAADYL-----VKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 121 ~~~~al~~GA~DyL-----~KP~~~~eL~~~L~~v~r 152 (603)
.+..+|++|+++.| .|--++.++...+..+..
T Consensus 203 Da~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 203 EASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 99999999999986 456677888777776653
No 116
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=82.03 E-value=17 Score=43.32 Aligned_cols=116 Identities=9% Similarity=0.010 Sum_probs=78.9
Q ss_pred CEEEEE----ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHhcCCCCceEEEEeCCCCCC--CHHHHHHHHHhc
Q 007462 32 LRVLLV----EADDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSI--SGFALLTLVMEH 102 (603)
Q Consensus 32 lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~---A~dg~eALe~L~~~~~~pDLVLlDl~MPgm--DGleLLr~Lr~~ 102 (603)
.+|+|. |.+..-...+..+|+..||+|+. ..+.+++.+...+.. +|+|++-..+... ..-++++.|++.
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 356543 44566677788889999999964 246788888887654 8888876555432 355778888765
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
. ..+++ |++.+..-........++|+++||..-.+..++...+.+.+
T Consensus 661 G-~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 661 G-REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred C-CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 3 12333 34555433344456788999999999888888777776655
No 117
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=81.85 E-value=14 Score=33.57 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCC-CHHHHHHHHHhcccCCCCeEEEEecCCC
Q 007462 42 STRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 42 ~~r~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgm-DGleLLr~Lr~~~~~~~IPVImlSa~~d 118 (603)
.-...+..+|++.|+++.. ....++.++.+... ..||+|.+-+..+.. ...++++.|++.. ++++||+--.+..
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~--p~~~iv~GG~~~t 79 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVVGGPHAT 79 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHC--CCCEEEECCcchh
Confidence 3456788899988987655 34556667777542 249999999855554 3677888887653 6777776544433
Q ss_pred HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 119 VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 119 ~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
.. -..++.....||++.---..-+..+++.+.
T Consensus 80 ~~-p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 80 FF-PEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred hC-HHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 22 112234445578777555555666666553
No 118
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=81.51 E-value=13 Score=38.42 Aligned_cols=112 Identities=18% Similarity=0.235 Sum_probs=65.9
Q ss_pred CEEEEEecCH----HHHHHHH--HHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHH-----HHHHH
Q 007462 32 LRVLLVEADD----STRQIVT--ALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF-----ALLTL 98 (603)
Q Consensus 32 lrVLLVDDD~----~~r~lL~--~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGl-----eLLr~ 98 (603)
+|+=|+.|+. ...+.++ +.|.+.||.|.. ..|.--|-++.+-. -.+|+-+.-|-.+|. ..|+.
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~G----caavMPlgsPIGSg~Gi~n~~~l~~ 169 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAG----CAAVMPLGSPIGSGRGIQNPYNLRI 169 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-----SEBEEBSSSTTT---SSTHHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCC----CCEEEecccccccCcCCCCHHHHHH
Confidence 5776776654 2333433 346678999876 45666665555533 235566666755543 66777
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHH
Q 007462 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHV 150 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K-----P~~~~eL~~~L~~v 150 (603)
|++.. ++|||+=.+-.....+..||++|++..|+- --++-.+...+...
T Consensus 170 i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~A 223 (247)
T PF05690_consen 170 IIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLA 223 (247)
T ss_dssp HHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred HHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHH
Confidence 77653 899999999999999999999999999874 44455555444443
No 119
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=80.89 E-value=12 Score=38.47 Aligned_cols=119 Identities=25% Similarity=0.347 Sum_probs=80.0
Q ss_pred Cccccchhhhhhhc---------cCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhC-CCEEEE------ECCHH
Q 007462 2 GDVVLNDEELKEMN---------GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKS-SYRVTA------VPDGL 65 (603)
Q Consensus 2 ~~~~~~~~~~~~~~---------~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~~------A~dg~ 65 (603)
|.+|++.+|+.-|. +.+++|-- .+-.|.......++.++... |..|+. +.|..
T Consensus 63 GdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G-----------~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~ 131 (241)
T COG3142 63 GDFVYSDDELEIMLEDIRLARELGVQGVVLG-----------ALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPL 131 (241)
T ss_pred CCcccChHHHHHHHHHHHHHHHcCCCcEEEe-----------eecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHH
Confidence 78999999998887 45555543 45556666677888888753 444443 56999
Q ss_pred HHHHHHhcCCCCceEEEEeC-CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHH-HHcCCcEEEe
Q 007462 66 KAWEVLKGRPRNIDLILTEV-DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKC-MMRGAADYLV 135 (603)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl-~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~a-l~~GA~DyL~ 135 (603)
+|++.|-+.. +.=||+-= .-.-.+|++.|++|-+.. ..-++||.-+--..+.+... ...|+.+|-.
T Consensus 132 ~ale~li~~G--v~RILTsGg~~sa~eg~~~l~~li~~a--~gri~Im~GaGV~~~N~~~l~~~tg~~e~H~ 199 (241)
T COG3142 132 EALEQLIELG--VERILTSGGKASALEGLDLLKRLIEQA--KGRIIIMAGAGVRAENIAELVLLTGVTEVHG 199 (241)
T ss_pred HHHHHHHHCC--CcEEecCCCcCchhhhHHHHHHHHHHh--cCCEEEEeCCCCCHHHHHHHHHhcCchhhhh
Confidence 9999998754 77777632 334578999999886544 34566666655555555554 5677766643
No 120
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=80.56 E-value=6.6 Score=39.55 Aligned_cols=118 Identities=26% Similarity=0.324 Sum_probs=67.9
Q ss_pred Cccccchhhhhhhcc---------CCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHh-CCCEEEE------ECCHH
Q 007462 2 GDVVLNDEELKEMNG---------NEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK-SSYRVTA------VPDGL 65 (603)
Q Consensus 2 ~~~~~~~~~~~~~~~---------~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~------A~dg~ 65 (603)
|.++++.+|+..|.. .+++|=- .|=+|.......++.++.. .|+.++. +.+..
T Consensus 62 gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG-----------~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~ 130 (201)
T PF03932_consen 62 GDFVYSDEEIEIMKEDIRMLRELGADGFVFG-----------ALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPE 130 (201)
T ss_dssp S-S---HHHHHHHHHHHHHHHHTT-SEEEE-------------BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHcCCCeeEEE-----------eECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHH
Confidence 678999999999872 2222211 1224555666777777764 3677665 56999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH-cCCcEEE
Q 007462 66 KAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYL 134 (603)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~-~GA~DyL 134 (603)
+||+.|.+.. ++-||+-=.-+ -.+|++.|++|.+... ..+- ||..+--..+.+....+ .|+..|-
T Consensus 131 ~al~~L~~lG--~~rVLTSGg~~~a~~g~~~L~~lv~~a~-~~i~-Im~GgGv~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 131 EALEQLIELG--FDRVLTSGGAPTALEGIENLKELVEQAK-GRIE-IMPGGGVRAENVPELVEETGVREIH 197 (201)
T ss_dssp HHHHHHHHHT---SEEEESTTSSSTTTCHHHHHHHHHHHT-TSSE-EEEESS--TTTHHHHHHHHT-SEEE
T ss_pred HHHHHHHhcC--CCEEECCCCCCCHHHHHHHHHHHHHHcC-CCcE-EEecCCCCHHHHHHHHHhhCCeEEe
Confidence 9999998764 99999965544 4799999999976532 2333 44443333333444443 7776664
No 121
>PRK12704 phosphodiesterase; Provisional
Probab=80.08 E-value=3 Score=47.63 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=38.6
Q ss_pred eEEEEecCCCHH--HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVS--TVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~--~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.+|+||+++... .+..+++.++.|+.+||++.+++...++.-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 588899998776 89999999999999999999999888776554
No 122
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=80.03 E-value=29 Score=34.63 Aligned_cols=87 Identities=20% Similarity=0.204 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCC-CEE-EEECCHHHHHHHHhcCCCCceEEEEeCC-------CCCCCHHHHHHHHHhcccCCCCeEEEE
Q 007462 43 TRQIVTALLRKSS-YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVD-------LPSISGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 43 ~r~lL~~lL~~~G-y~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~-------MPgmDGleLLr~Lr~~~~~~~IPVIml 113 (603)
....++.+ ++.+ ..+ ..+.+.+++...... .+|+|.+... ......+++++.|++.- ++|||..
T Consensus 111 ~~~~i~~~-~~~g~~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~ 183 (219)
T cd04729 111 LAELIKRI-HEEYNCLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAE 183 (219)
T ss_pred HHHHHHHH-HHHhCCeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEe
Confidence 33344333 3344 543 446788888776653 3788765321 11223578889887642 6999999
Q ss_pred ecCCCHHHHHHHHHcCCcEEEeC
Q 007462 114 SSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+-.+.+.+.+++..||+.+++-
T Consensus 184 GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 184 GRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEc
Confidence 98889999999999999998864
No 123
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=79.47 E-value=16 Score=36.23 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=51.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~G--y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
-+++|+.+++.+++.+.+++..+| |.|..+.+..++++-++.....+.|+..+..+.. .++-++.
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~ 98 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIRE 98 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHH
Confidence 488999999999999999999997 6688899999999988743334788888887766 5544443
No 124
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=79.03 E-value=24 Score=36.42 Aligned_cols=101 Identities=11% Similarity=0.024 Sum_probs=68.1
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 007462 47 VTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (603)
Q Consensus 47 L~~lL~~~G--y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~ 124 (603)
|+..|+.-. +-+.........++.+.... +|.|++|++--..|.-++...|+..... .+.+|+=....+...+.+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g--~D~v~iDlEH~~~~~~~~~~~~~a~~~~-g~~~~VRv~~~~~~~i~~ 79 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAG--FDWLLIDGEHAPNDVRTILSQLQALAPY-PSSPVVRPAIGDPVLIKQ 79 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHhc-CCCcEEECCCCCHHHHHH
Confidence 445555422 22223334456667776554 9999999988888888888877654332 334555555567778999
Q ss_pred HHHcCCcEEEe-CCCCHHHHHHHHHHH
Q 007462 125 CMMRGAADYLV-KPVRRNELRNLWQHV 150 (603)
Q Consensus 125 al~~GA~DyL~-KP~~~~eL~~~L~~v 150 (603)
+++.||+++++ |--+.++++.+++.+
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 99999999975 555778877777654
No 125
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.86 E-value=32 Score=30.13 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=58.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
+...+|++||.++.....+ +..|+.++... .-.+.|+.+.-. ..+.||+...- +..-+.++..+++. .+.
T Consensus 19 ~~~~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~-d~~n~~~~~~~r~~--~~~ 89 (116)
T PF02254_consen 19 EGGIDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGIE--KADAVVILTDD-DEENLLIALLAREL--NPD 89 (116)
T ss_dssp HTTSEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSS-HHHHHHHHHHHHHH--TTT
T ss_pred hCCCEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCcc--ccCEEEEccCC-HHHHHHHHHHHHHH--CCC
Confidence 3446899999998874433 45567776643 445566655433 48888887542 23445666666553 366
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
++||+... +.........+|++..+
T Consensus 90 ~~ii~~~~--~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 90 IRIIARVN--DPENAELLRQAGADHVI 114 (116)
T ss_dssp SEEEEEES--SHHHHHHHHHTT-SEEE
T ss_pred CeEEEEEC--CHHHHHHHHHCCcCEEE
Confidence 78776664 45555566778997765
No 126
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=78.64 E-value=23 Score=40.14 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEE
Q 007462 40 DDSTRQIVTALLRKSS-YRVTAVP------DGLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 40 D~~~r~lL~~lL~~~G-y~V~~A~------dg~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVI 111 (603)
.|.-...|...|+..| ++|.... +.++..+.+.... ||||.+-..-|... ..++++.+++. .++++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~--pdvVgis~~t~~~~~a~~~~~~~k~~--~P~~~iV 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHC--PDLVLITAITPAIYIACETLKFARER--LPNAIIV 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcC--cCEEEEecCcccHHHHHHHHHHHHHH--CCCCEEE
Confidence 4666778999999999 5766542 3344456666544 99999987666543 55777777764 3677777
Q ss_pred EEecCCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 112 MMSSQDSVSTVYKCMM-RGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 112 mlSa~~d~~~~~~al~-~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+=-.+... .-.+++. ....||++.---...+..+++.+.
T Consensus 97 ~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 97 LGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred EcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 54444332 2234443 355688888776677777777653
No 127
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.78 E-value=24 Score=37.37 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=63.0
Q ss_pred EEEEEecCHHHHHHHHHHHHh----CCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEADDSTRQIVTALLRK----SSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~----~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
.|||-|++-... .+...+.. ... -.+.+.+.++|.+.++.. +|+|++|=..|. +--++.+.++.....+
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~ag---aDiI~LDn~~~e-~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAG---ADIIMLDNMTPE-EIREVIEALKREGLRE 230 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcC---cCEEEECCCCHH-HHHHHHHHHHhcCcCC
Confidence 478888886555 55555532 221 245588999999999853 799999954332 2333334443321112
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
-..|..|+--..+.+.+....|+|.+-+
T Consensus 231 -~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 231 -RVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred -CEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3467778888999999999999987654
No 128
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=77.64 E-value=35 Score=34.11 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=49.9
Q ss_pred CHHHHHHHHhcCCCCce-EEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNID-LILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MPgm-DG--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+..+.++.+.+.. +| ++++|+.--++ .| +++++++++. .++|||+-.+..+.+.+.+++..||+++++
T Consensus 146 ~~~~~~~~~~~~g--~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEELG--LEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3455556565543 66 77788854432 22 6888888764 478999988899999999999999999886
No 129
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=75.69 E-value=27 Score=36.28 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=73.1
Q ss_pred hHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
|+.+..+...+++|+.+.+. ...++.++...+. .|.......+..+++.. .|++|+=.. .+.-|+-+++.+.
T Consensus 219 ~~~l~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~-~E~~~~~~~EAma 292 (371)
T cd04962 219 FAKVRKEVPARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSE-KESFGLAALEAMA 292 (371)
T ss_pred HHHHHhcCCceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCC-cCCCccHHHHHHH
Confidence 44444444567888876643 3456666666554 35544444455555643 588876443 3344777888774
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
..+|||... .. ...+.+..|..+|+..|-+.++|...+..++.
T Consensus 293 -----~g~PvI~s~-~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 293 -----CGVPVVASN-AG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -----cCCCEEEeC-CC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 357888633 22 23456677889999999999999998887753
No 130
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=75.41 E-value=25 Score=36.44 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=67.5
Q ss_pred CEEEEEecCHH----HHHH--HHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHH-----HHHHH
Q 007462 32 LRVLLVEADDS----TRQI--VTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF-----ALLTL 98 (603)
Q Consensus 32 lrVLLVDDD~~----~r~l--L~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGl-----eLLr~ 98 (603)
+++=|+-|+.. ..+. -.++|-+.||.|.. -.|.--|-++.+.. -..|+-+.-|-.+|+ ..|+.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~G----caavMPl~aPIGSg~G~~n~~~l~i 176 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAG----CAAVMPLGAPIGSGLGLQNPYNLEI 176 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcC----ceEeccccccccCCcCcCCHHHHHH
Confidence 56666666532 2223 33456678998876 34555555554432 356677777755554 56677
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
|+++. ++|||+=.+-.....+..+|++|++..|+-
T Consensus 177 iie~a---~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 177 IIEEA---DVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHhC---CCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 76653 899999999999999999999999999864
No 131
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=74.76 E-value=45 Score=32.83 Aligned_cols=87 Identities=21% Similarity=0.163 Sum_probs=56.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYR--VT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
+..-+|..||.++.....++.-++..++. +. ...|..+++..+......+|+|++|=-.....-.+++..|......
T Consensus 70 rga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l 149 (189)
T TIGR00095 70 RGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWIL 149 (189)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCC
Confidence 33458999999999999999999887763 32 3456666665443221237999999654443445667777655444
Q ss_pred CCCeEEEEec
Q 007462 106 KNIPVIMMSS 115 (603)
Q Consensus 106 ~~IPVImlSa 115 (603)
..--||++-.
T Consensus 150 ~~~~iiv~E~ 159 (189)
T TIGR00095 150 EDTVLIVVEE 159 (189)
T ss_pred CCCeEEEEEe
Confidence 4455555543
No 132
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.20 E-value=33 Score=35.51 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=68.4
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 007462 47 VTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (603)
Q Consensus 47 L~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~ 124 (603)
|+..|+.-.. -+........+.+++.... ||.|++|++--.+|--++...|+.... ..++.|+=....+...+.+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~~~a~~~-~g~~~~VRvp~~~~~~i~r 79 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAG--FDWLLLDGEHAPNDVLTFIPQLMALKG-SASAPVVRPPWNEPVIIKR 79 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEecccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHHH
Confidence 4455554322 2222334456667776544 999999999998888888777776543 3455555666678899999
Q ss_pred HHHcCCcEEEeCCC-CHHHHHHHHHH
Q 007462 125 CMMRGAADYLVKPV-RRNELRNLWQH 149 (603)
Q Consensus 125 al~~GA~DyL~KP~-~~~eL~~~L~~ 149 (603)
+++.||+++++-=+ +.++.+.+++.
T Consensus 80 ~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 80 LLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred HhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 99999999987655 45666655543
No 133
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=74.19 E-value=32 Score=36.64 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=61.2
Q ss_pred HHHHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecCCCHH
Q 007462 47 VTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQDSVS 120 (603)
Q Consensus 47 L~~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MP-----gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~ 120 (603)
+-..|+..|..|.. +.+.++|..+.+. .+|.|++.-.-. ...-+.++.++++. -++|||+--+..+..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGR 174 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHH
Confidence 44455666876544 6788888776654 389998843211 22358899998754 268999988889999
Q ss_pred HHHHHHHcCCcEEEeC
Q 007462 121 TVYKCMMRGAADYLVK 136 (603)
Q Consensus 121 ~~~~al~~GA~DyL~K 136 (603)
.+..++.+||+..++-
T Consensus 175 ~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 175 GMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHHcCCCEeecc
Confidence 9999999999998764
No 134
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=74.05 E-value=30 Score=36.00 Aligned_cols=102 Identities=12% Similarity=0.056 Sum_probs=69.8
Q ss_pred HHHHHHHhCCCE--EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 007462 46 IVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 46 lL~~lL~~~Gy~--V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
.|+..|+.-... +........+.+++.... ||.|++|++--.+|--++...|+.... ..++.|+=....+...+.
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~i~a~~~-~g~~~lVRvp~~~~~~i~ 85 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAG--FDWLVLDGEHAPNDVSTFIPQLMALKG-SASAPVVRVPTNEPVIIK 85 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEccccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHH
Confidence 466666653222 222234456667776554 999999999998888888777765543 345555566667889999
Q ss_pred HHHHcCCcEEEeCCC-CHHHHHHHHHHH
Q 007462 124 KCMMRGAADYLVKPV-RRNELRNLWQHV 150 (603)
Q Consensus 124 ~al~~GA~DyL~KP~-~~~eL~~~L~~v 150 (603)
++++.||+++++-=+ +.++.+.+++..
T Consensus 86 r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 86 RLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 999999999987655 456666655543
No 135
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=73.89 E-value=37 Score=35.68 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=68.5
Q ss_pred HHHHHHHhCCCE--EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 007462 46 IVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 46 lL~~lL~~~Gy~--V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
.|+..|..-... +........+.+++.... ||.|++|++---.|--++...|+.... ..++.|+=....+...+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~G--fD~v~iD~EHg~~~~~~l~~~i~a~~~-~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAIAP-YASQPVIRPVEGSKPLIK 84 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcC--CCEEEEccccCCCCHHHHHHHHHHHHh-cCCCeEEECCCCCHHHHH
Confidence 355666543222 222234456667776554 999999999988887777777765543 344555555666888999
Q ss_pred HHHHcCCcEEEeCCCC-HHHHHHHHHHH
Q 007462 124 KCMMRGAADYLVKPVR-RNELRNLWQHV 150 (603)
Q Consensus 124 ~al~~GA~DyL~KP~~-~~eL~~~L~~v 150 (603)
++++.||.++|+-=++ .++.+.+++..
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 9999999999987775 45555555433
No 136
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=73.71 E-value=60 Score=32.36 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEH 102 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPg-------mDGleLLr~Lr~~ 102 (603)
....+++-+.. .. .+...+...+..+.. +.+..++..+.+ .. .|.|+++-.-++ ...+++++++++.
T Consensus 80 g~d~v~l~~~~-~~-~~~~~~~~~~i~~i~~v~~~~~~~~~~~-~g--ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~ 154 (236)
T cd04730 80 GVPVVSFSFGP-PA-EVVERLKAAGIKVIPTVTSVEEARKAEA-AG--ADALVAQGAEAGGHRGTFDIGTFALVPEVRDA 154 (236)
T ss_pred CCCEEEEcCCC-CH-HHHHHHHHcCCEEEEeCCCHHHHHHHHH-cC--CCEEEEeCcCCCCCCCccccCHHHHHHHHHHH
Confidence 34555555542 22 233334445555444 456666655444 33 788887542111 2457788888753
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.++|||+.-+-...+.+.+++..||+.+++-
T Consensus 155 ---~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 ---VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred ---hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 2689999888888888999999999998764
No 137
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=73.50 E-value=21 Score=31.69 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=50.9
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCC-CCeEEE
Q 007462 38 EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICK-NIPVIM 112 (603)
Q Consensus 38 DDD~~~r~lL~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~-~IPVIm 112 (603)
|.++.-...+..+|+..||++.... ...+.++.+... .||+|.+-..+.... .+..+..+++.. + +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 5566777888999999999988643 556666666664 499999998776543 456666665533 4 677765
Q ss_pred Ee
Q 007462 113 MS 114 (603)
Q Consensus 113 lS 114 (603)
--
T Consensus 86 GG 87 (125)
T cd02065 86 GG 87 (125)
T ss_pred eC
Confidence 44
No 138
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.50 E-value=41 Score=37.80 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=59.4
Q ss_pred cCCCEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCC-----CHHHHHHHHH
Q 007462 29 RMALRVLLVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI-----SGFALLTLVM 100 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~---r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm-----DGleLLr~Lr 100 (603)
....+|+||+-|..- ...+..+....|+.+..+.+..++.+.+... .+|+||+|. ||. +-++-+..+.
T Consensus 250 ~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDT--aGr~~rd~~~l~eL~~~~ 325 (432)
T PRK12724 250 HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDT--AGYSHRNLEQLERMQSFY 325 (432)
T ss_pred hcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeC--CCCCccCHHHHHHHHHHH
Confidence 345689999988732 2334444455677666666667777777643 489999996 332 2233333332
Q ss_pred hcc--cCCCCeEEEEecCCCHHHHHHHHH----cCCcEEEeC
Q 007462 101 EHE--ICKNIPVIMMSSQDSVSTVYKCMM----RGAADYLVK 136 (603)
Q Consensus 101 ~~~--~~~~IPVImlSa~~d~~~~~~al~----~GA~DyL~K 136 (603)
... ..+.-.++++++......+..++. .|.+.+|.-
T Consensus 326 ~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlT 367 (432)
T PRK12724 326 SCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred HhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 211 112345677787765544444432 667776543
No 139
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=73.35 E-value=20 Score=38.71 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=72.0
Q ss_pred CEEEEEecCHHHHHHHHHHH------HhCCCEE--EEECCHHHHHHHHhcCCCCceEEEEeCCCC-----CCCHHHHHHH
Q 007462 32 LRVLLVEADDSTRQIVTALL------RKSSYRV--TAVPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTL 98 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL------~~~Gy~V--~~A~dg~eALe~L~~~~~~pDLVLlDl~MP-----gmDGleLLr~ 98 (603)
+++=|+.|+....--+...+ -+.||.| +++.|...|-++..-. + +.++-+.-| +..--+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g---~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAG---A-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcC---C-EEEeeccccccCCCCCCCHHHHHH
Confidence 56666666554433333322 2448987 4567888777666542 4 333332222 2333466777
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHH
Q 007462 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVW 151 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~-----KP~~~~eL~~~L~~v~ 151 (603)
+.+. +.+|||+=.+-...+.+..||++|+++.|+ |--++-.+..++....
T Consensus 244 ~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av 298 (326)
T PRK11840 244 IVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAV 298 (326)
T ss_pred HHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHH
Confidence 7665 479999999999999999999999999874 4556666666655544
No 140
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.84 E-value=51 Score=33.75 Aligned_cols=89 Identities=12% Similarity=-0.036 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCCCC------CHHHHHHHHHhcccCCCCeEEEE
Q 007462 43 TRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSI------SGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MPgm------DGleLLr~Lr~~~~~~~IPVIml 113 (603)
....+...+++.|.++..+- +..+.++.+.... ..++++ -.+|+. +-.+.+++|++.. ++.||++=
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v~ 191 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLV--GNKYLVVG 191 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEEe
Confidence 34456667788898765532 3344555444333 467766 456653 2245666666532 34676654
Q ss_pred ecCCCHHHHHHHHHcCCcEEEeC
Q 007462 114 SSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+-...+.+.+++.+||+.+++-
T Consensus 192 gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 192 FGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEC
Confidence 55558888889899999999986
No 141
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=71.11 E-value=43 Score=37.13 Aligned_cols=107 Identities=13% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+++||.|.+. +..|+++.......+...-..++..+++.. .|++|+=-. .+.=|+-+++.+. ..+||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA-----~G~PV 358 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA-----SGVPV 358 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH-----cCCCE
Confidence 468888887654 455666655443333334456777777764 578776332 2333666777774 36799
Q ss_pred EEEecCCCHHHHHHHHHc---CCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 111 IMMSSQDSVSTVYKCMMR---GAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~---GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
|.... ... .+.+.. |-.++|+.|-+.++|...|..++.
T Consensus 359 I~s~~-gg~---~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 359 VAARA-GGI---PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EEcCC-CCc---HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 85433 222 233444 889999999999999999988864
No 142
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=70.94 E-value=17 Score=36.81 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
++++++.+.. .-.+|||+|+-+. ....+..+-++||++||+--+.++|-..+-+.+...
T Consensus 83 ~emvk~ar~~--gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~ 147 (268)
T KOG4175|consen 83 IEMVKEARPQ--GVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKH 147 (268)
T ss_pred HHHHHHhccc--CcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhc
Confidence 3444444332 2468999998765 778888999999999999988888876554444333
No 143
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=70.93 E-value=42 Score=34.42 Aligned_cols=59 Identities=10% Similarity=0.215 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~d------~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.++++++.++.. .++||++|+-... ...+..+.++|+++.+.-.+..+++...++.+..
T Consensus 63 ~~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 63 DVLELVKEIRKK---NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHHhhc---CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 356777777653 2689998887653 6678889999999999976667777666665543
No 144
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=70.84 E-value=33 Score=33.34 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=50.1
Q ss_pred EECCHHHHHHHHhcCCCCceEEEEeCCCCC--------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCc
Q 007462 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPS--------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA 131 (603)
Q Consensus 60 ~A~dg~eALe~L~~~~~~pDLVLlDl~MPg--------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~ 131 (603)
.+.+..++.+.++. .+|+|+++-..|. ..|+++++.+... .+++||+++-+- ..+.+.+++..|++
T Consensus 102 s~h~~~e~~~a~~~---g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~--~~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 102 STHNLEELAEAEAE---GADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT--SIDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 35677777665543 3899998766552 2378999988653 246898888666 57888889999998
Q ss_pred EEEe
Q 007462 132 DYLV 135 (603)
Q Consensus 132 DyL~ 135 (603)
++.+
T Consensus 176 gva~ 179 (196)
T TIGR00693 176 GVAV 179 (196)
T ss_pred EEEE
Confidence 8764
No 145
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=70.67 E-value=13 Score=36.52 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=46.4
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCC---CCCH--HHHHHHHHhcccCCCC
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP---SISG--FALLTLVMEHEICKNI 108 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MP---gmDG--leLLr~Lr~~~~~~~I 108 (603)
|||||.....-..+.++|+..|+.+....+-...++.+... .||.||+ ..=| .-++ .++++++ ..++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iil-sgGpg~p~~~~~~~~~i~~~-----~~~~ 73 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVI-SPGPCTPNEAGISLEAIRHF-----AGKL 73 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEE-cCCCCChhhcchhHHHHHHh-----ccCC
Confidence 89999999999999999999999877755322223333332 3886666 2222 2222 3344443 1468
Q ss_pred eEEEEe
Q 007462 109 PVIMMS 114 (603)
Q Consensus 109 PVImlS 114 (603)
||+-+.
T Consensus 74 PvLGIC 79 (188)
T TIGR00566 74 PILGVC 79 (188)
T ss_pred CEEEEC
Confidence 998776
No 146
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=70.57 E-value=46 Score=36.22 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEE---------------EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRV---------------TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFAL 95 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V---------------~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleL 95 (603)
..+++||-+.+.....|.++++..|... ..+....+...++.. -||+++--.....-|.-+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCCH
Confidence 4678888888765567888887777632 223333455555543 588666322212235556
Q ss_pred HHHHHhcccCCCCeEEEEecCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 96 LTLVMEHEICKNIPVIMMSSQDSVSTVYKCM-MRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 96 Lr~Lr~~~~~~~IPVImlSa~~d~~~~~~al-~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
++.+. ..+|||+--.......+.+.+ .. +++..|-+.++|...|..++.
T Consensus 338 lEAma-----~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA-----FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH-----hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhc
Confidence 66663 357888633223344444433 33 457778899999999988764
No 147
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=70.47 E-value=77 Score=30.78 Aligned_cols=105 Identities=17% Similarity=0.088 Sum_probs=67.1
Q ss_pred HhhhcCCCEEEEEecCH--HHHHHHHHHHHhCCCEEE----EECCHHHHHHHHhcCCCCceEEEEeCC-----CCCCCHH
Q 007462 25 TFLQRMALRVLLVEADD--STRQIVTALLRKSSYRVT----AVPDGLKAWEVLKGRPRNIDLILTEVD-----LPSISGF 93 (603)
Q Consensus 25 ~fl~~m~lrVLLVDDD~--~~r~lL~~lL~~~Gy~V~----~A~dg~eALe~L~~~~~~pDLVLlDl~-----MPgmDGl 93 (603)
+.+.+.....+++.+.. .....+...+++.|..+. .+.+..++++.+.. ..|+|++... .....+.
T Consensus 71 ~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~---~~d~v~~~~~~~~~~~~~~~~~ 147 (202)
T cd04726 71 EMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL---GVDIVILHRGIDAQAAGGWWPE 147 (202)
T ss_pred HHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC---CCCEEEEcCcccccccCCCCCH
Confidence 33445555666665543 233445555666777644 45688888885543 3788887531 1124567
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 94 eLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+.++++++. .++||++.-+- ..+.+.++++.||+.+++-
T Consensus 148 ~~i~~~~~~---~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 148 DDLKKVKKL---LGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HHHHHHHhh---cCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 788887653 46787766665 5888999999999988654
No 148
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=70.22 E-value=19 Score=33.98 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=46.8
Q ss_pred hHHhhhcCCCEEEEEecCHHHHHHHHHHHH----------hCCCEEEEEC----------CHHHHHHHHhcCCCCceEEE
Q 007462 23 WETFLQRMALRVLLVEADDSTRQIVTALLR----------KSSYRVTAVP----------DGLKAWEVLKGRPRNIDLIL 82 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD~~~r~lL~~lL~----------~~Gy~V~~A~----------dg~eALe~L~~~~~~pDLVL 82 (603)
|-..+.....+|++++-|+.....+..++. ..++.+.... ...++++.++.. .+|+||
T Consensus 19 l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~ii 96 (148)
T cd03114 19 LITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATPEVIRVLDAA--GFDVII 96 (148)
T ss_pred HHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHHHHHHHHHhc--CCCEEE
Confidence 334445566899999987644333222221 1233232222 235566766653 499999
Q ss_pred EeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 83 lDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
+|. +|..- ..+..+.. .+..||+++..
T Consensus 97 IDt--aG~~~-~~~~~~~~----Ad~~ivv~tpe 123 (148)
T cd03114 97 VET--VGVGQ-SEVDIASM----ADTTVVVMAPG 123 (148)
T ss_pred EEC--CccCh-hhhhHHHh----CCEEEEEECCC
Confidence 998 77553 33344432 35677777765
No 149
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=69.67 E-value=38 Score=33.17 Aligned_cols=77 Identities=9% Similarity=0.083 Sum_probs=56.2
Q ss_pred HhCCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCC
Q 007462 52 RKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGA 130 (603)
Q Consensus 52 ~~~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA 130 (603)
+..+.. +..+.+..|+.+.++. .+|+|-++- .+.. |.++++.|+.. .+++|++.+-+- +.+.+.+.+..|+
T Consensus 94 ~~~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~--~~~~p~~a~GGI-~~~n~~~~~~~G~ 165 (190)
T cd00452 94 NRAGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGP--FPQVRFMPTGGV-SLDNAAEWLAAGV 165 (190)
T ss_pred HHcCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhh--CCCCeEEEeCCC-CHHHHHHHHHCCC
Confidence 334544 3457799999998864 379998853 3333 99999999653 356898877776 7888999999998
Q ss_pred cEEEeC
Q 007462 131 ADYLVK 136 (603)
Q Consensus 131 ~DyL~K 136 (603)
+.+-+-
T Consensus 166 ~~v~v~ 171 (190)
T cd00452 166 VAVGGG 171 (190)
T ss_pred EEEEEc
Confidence 877544
No 150
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=68.97 E-value=79 Score=34.27 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=65.4
Q ss_pred EEEEEec----CHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHhcCCCCceEEEEeCC----------CC-CCC--H
Q 007462 33 RVLLVEA----DDSTRQIVTALLRKSS-YRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD----------LP-SIS--G 92 (603)
Q Consensus 33 rVLLVDD----D~~~r~lL~~lL~~~G-y~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~----------MP-gmD--G 92 (603)
.+|.||- .....+.++.+=+... ..|+. +.+.++|..+++.. +|+|++-.. .. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG---ad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG---ADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC---cCEEEECCCCCcccccccccCCCCCccH
Confidence 6777753 3344444444444443 44443 67999998888643 788764311 11 112 5
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+..+.+. .++|||.-.+-.....+.+|+.+||+.+.+-
T Consensus 190 l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 6668887653 3689999999999999999999999998865
No 151
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=68.95 E-value=6 Score=39.23 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=36.9
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEe
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE 84 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlD 84 (603)
|||||.....-..|.++|++.|+++......+..++.+... .||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEEC
Confidence 89999999999999999999999887765443333444333 38888773
No 152
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=68.71 E-value=45 Score=31.71 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=50.3
Q ss_pred ECCHHHHHHHHhcCCCCceEEEEeCCCCC--------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcE
Q 007462 61 VPDGLKAWEVLKGRPRNIDLILTEVDLPS--------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (603)
Q Consensus 61 A~dg~eALe~L~~~~~~pDLVLlDl~MPg--------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~D 132 (603)
+.+..++.+.+.. .+|.|++.-..|. ..|++.++++++. .++||++..+-. .+.+.+++..|++.
T Consensus 102 ~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi~-~~~i~~~~~~Ga~~ 174 (196)
T cd00564 102 THSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGIT-PENAAEVLAAGADG 174 (196)
T ss_pred CCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCCC-HHHHHHHHHcCCCE
Confidence 4567777776653 3899998755443 3467888888754 468999887764 67888999999998
Q ss_pred EEeC
Q 007462 133 YLVK 136 (603)
Q Consensus 133 yL~K 136 (603)
+.+-
T Consensus 175 i~~g 178 (196)
T cd00564 175 VAVI 178 (196)
T ss_pred EEEe
Confidence 8654
No 153
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=68.24 E-value=58 Score=32.37 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=54.9
Q ss_pred HhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEe-C--CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH
Q 007462 52 RKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTE-V--DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM 127 (603)
Q Consensus 52 ~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlD-l--~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~ 127 (603)
...|..+ +.+.+.+++.+.++. .+|+|.+- . ... ..+++++++|+.. ...++|||...+-.+.+.+.+++.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~-~~~~~~~~~l~~~-~~~~~pvia~gGI~s~edi~~~~~ 192 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTF-EVDLNTTERLAPL-IPKDVILVSESGISTPEDVKRLAE 192 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCcccc-CcCHHHHHHHHHh-CCCCCEEEEEcCCCCHHHHHHHHH
Confidence 4467765 346777777666653 27777654 1 111 2235777888653 113689999999999999999999
Q ss_pred cCCcEEEeC
Q 007462 128 RGAADYLVK 136 (603)
Q Consensus 128 ~GA~DyL~K 136 (603)
+||+++++-
T Consensus 193 ~Ga~gvivG 201 (217)
T cd00331 193 AGADAVLIG 201 (217)
T ss_pred cCCCEEEEC
Confidence 999999753
No 154
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=67.51 E-value=87 Score=35.50 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=68.3
Q ss_pred hHHh--hhcCCCEEEEEecC----HHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCC----
Q 007462 23 WETF--LQRMALRVLLVEAD----DSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS---- 89 (603)
Q Consensus 23 we~f--l~~m~lrVLLVDDD----~~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPg---- 89 (603)
|+.. |......+|+||.. ......+..+-.+. +..|+. +.+.++|..+++.. .|+|.+-+ -|+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG---ad~i~vg~-g~gs~~~ 305 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG---ADAVKVGI-GPGSICT 305 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC---CCEEEECC-CCCcccc
Confidence 5554 33345788888854 12333444443343 344333 66888888888753 68886533 122
Q ss_pred --------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 90 --------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 90 --------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
..-++++..++.......+|||.=.+......+.+|+.+||+-.++-
T Consensus 306 ~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 306 TRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred ceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 12244555554322224689998888889999999999999988764
No 155
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=67.40 E-value=47 Score=34.96 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+++||.+.+. +..+..++...+.. +.......+..+++.. .|++|+=-. ...-|+-+++.+. ..+
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma-----~G~ 297 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA-----SGL 297 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH-----cCC
Confidence 367888877654 45667777766543 3333333445555643 577765322 2334677888774 357
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
|||+ |.... ..+.+..|..+++..|-+.++|...|..++.
T Consensus 298 Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 298 PVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred CEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 8876 33332 3345567888999999999999999988754
No 156
>PRK14974 cell division protein FtsY; Provisional
Probab=67.32 E-value=78 Score=34.36 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=57.6
Q ss_pred hhcCCCEEEEEecCH---HHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHhcCCCCceEEEEeCCCCCCC--HHH
Q 007462 27 LQRMALRVLLVEADD---STRQIVTALLRKSSYRVTAVPDG-------LKAWEVLKGRPRNIDLILTEVDLPSIS--GFA 94 (603)
Q Consensus 27 l~~m~lrVLLVDDD~---~~r~lL~~lL~~~Gy~V~~A~dg-------~eALe~L~~~~~~pDLVLlDl~MPgmD--Gle 94 (603)
+.....+|+|+.-|. .....|..+....|..+.....+ .+|++.+... .+|+||+|.. +.. -..
T Consensus 164 l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTa--Gr~~~~~~ 239 (336)
T PRK14974 164 LKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTA--GRMHTDAN 239 (336)
T ss_pred HHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CccCCcHH
Confidence 334457899998883 34455666666777766554322 2444554443 3899999973 221 233
Q ss_pred HHHHHHhc--ccCCCCeEEEEecCCCHHHH--HHHH--HcCCcEEEeC
Q 007462 95 LLTLVMEH--EICKNIPVIMMSSQDSVSTV--YKCM--MRGAADYLVK 136 (603)
Q Consensus 95 LLr~Lr~~--~~~~~IPVImlSa~~d~~~~--~~al--~~GA~DyL~K 136 (603)
++.+|+.. ...++.-++++++....+.+ .+.+ ..+++.+|.-
T Consensus 240 lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 240 LMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred HHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 33333221 12355566666665443333 2333 3677777643
No 157
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=67.16 E-value=39 Score=39.58 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=71.9
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 007462 46 IVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 46 lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MP-----gmDGleLLr~Lr~~~~~~~IPVImlSa~~d 118 (603)
..-..|+..||.+.. +.++...+..|.... ||.|-+|-.+- +.....+++.|.......++.| +..+.++
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-ia~gVe~ 758 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV-VAEGVET 758 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeE-EEEcCCC
Confidence 344457888998765 668888888888765 99999997442 1223455666643222234554 4578889
Q ss_pred HHHHHHHHHcCCcE----EEeCCCCHHHHHHHHHHH
Q 007462 119 VSTVYKCMMRGAAD----YLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 119 ~~~~~~al~~GA~D----yL~KP~~~~eL~~~L~~v 150 (603)
.+....+.++|++. |+.||...++|...|+..
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 99999999999873 478999999999866543
No 158
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.92 E-value=45 Score=35.07 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=59.5
Q ss_pred CEEEEEec--CH---HHHHHHHHHHHhCCCEEEEECCHHHHHH--------HHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 32 LRVLLVEA--DD---STRQIVTALLRKSSYRVTAVPDGLKAWE--------VLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 32 lrVLLVDD--D~---~~r~lL~~lL~~~Gy~V~~A~dg~eALe--------~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
|||.||-. .+ .....+..+|+..|+++.......+.+. .+.. ..+|+||+ -|.||. +++.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~----iGGDGT-lL~a 73 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIA----IGGDGT-ILRI 73 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEE----EeCcHH-HHHH
Confidence 46777722 22 3344566667778888776532221111 1111 13787776 277884 5555
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++ . ...++||+.+.. |-.+||. .+.++++...|..+.+..
T Consensus 74 ~~-~-~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 74 EH-K-TKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred HH-h-cCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 55 2 235789887763 4456775 678899999998887553
No 159
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=66.48 E-value=20 Score=37.31 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+.+++++++|+. ..++|+|+|+-+. -...+.+|.++|+++.|+-.+..+|....+..+..
T Consensus 75 ~~~~~~~~~r~~--~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 75 DVFELVREIREK--DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 467888888743 2578999998553 44568889999999999988888888777766543
No 160
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=66.16 E-value=29 Score=34.74 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCCce-EEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcC-CcEEEe
Q 007462 64 GLKAWEVLKGRPRNID-LILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLV 135 (603)
Q Consensus 64 g~eALe~L~~~~~~pD-LVLlDl~MPgm-DG--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~G-A~DyL~ 135 (603)
..+..+.+.... ++ |+++|...-++ .| +++++++.+. ..+|||.-.+-.+.+.+.++++.| |+++++
T Consensus 148 ~~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 355666666533 56 88888765442 34 6888988754 258999988899999999999999 999885
No 161
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=65.93 E-value=75 Score=32.01 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=64.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+++|+.+.+......... ...-.|... -+..+..+++.. .|++|+--...+.-|+-+++.+. ..+
T Consensus 220 ~~~l~i~G~~~~~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~~~----ad~~i~ps~~~e~~~~~~~Ea~a-----~G~ 288 (359)
T cd03823 220 DIELVIVGNGLELEEESYEL--EGDPRVEFLGAYPQEEIDDFYAE----IDVLVVPSIWPENFPLVIREALA-----AGV 288 (359)
T ss_pred CcEEEEEcCchhhhHHHHhh--cCCCeEEEeCCCCHHHHHHHHHh----CCEEEEcCcccCCCChHHHHHHH-----CCC
Confidence 46677776654433222221 111223332 234666666653 57777643323445677888774 257
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
|||.. .... ..+.+..|..+++.+|-+.++|...+..++.
T Consensus 289 Pvi~~-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 289 PVIAS-DIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CEEEC-CCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 88853 3222 3345667888999999999999999988865
No 162
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=65.84 E-value=81 Score=33.04 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=43.8
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcE------EEeCCCCHHHHHHHHHHHHHhc
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD------YLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~D------yL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++++.+|++. -++|||..-+..+.+.+.+++..||+. +|..|.-..++..-|..++...
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 4667777653 369999999999999999999999876 4556766666666666665543
No 163
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=65.78 E-value=33 Score=36.03 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=56.4
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVIm 112 (603)
.|-+.-.++...+.+..+|...-|.++.+.++.+-++.++...+.+|.+|+.... .-..++..|.+.. --+|+|+
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g--~LLPaVi 76 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQG--ILLPAVI 76 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT------EEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcC--ccccEEE
Confidence 3555666788889999999888899999999999999999888889999998643 4456778887655 3579998
Q ss_pred EecC
Q 007462 113 MSSQ 116 (603)
Q Consensus 113 lSa~ 116 (603)
+...
T Consensus 77 l~~~ 80 (283)
T PF07688_consen 77 LGSS 80 (283)
T ss_dssp ES--
T ss_pred EecC
Confidence 8663
No 164
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=64.73 E-value=0.72 Score=46.02 Aligned_cols=41 Identities=51% Similarity=0.803 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccchhhhhhhhhcCCCccc
Q 007462 538 SIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKG 578 (603)
Q Consensus 538 ~~~r~~~~~r~~~k~~~r~~~k~~ry~~rk~~a~~r~rv~g 578 (603)
...|++.+.||+++++.|.|+++++|..||..|+.|||++|
T Consensus 290 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 290 SHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred cchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 57899999999999999999999999999999999999999
No 165
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=64.60 E-value=1.1e+02 Score=35.07 Aligned_cols=101 Identities=11% Similarity=0.206 Sum_probs=67.2
Q ss_pred CCCEEEEEecCH----HHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeC--------------CCC
Q 007462 30 MALRVLLVEADD----STRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEV--------------DLP 88 (603)
Q Consensus 30 m~lrVLLVDDD~----~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl--------------~MP 88 (603)
...-|++||--. .+...++.+=..+ +..|+. +.+.++|..+++.. .|+|.+-+ ..|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG---aD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG---VDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC---cCEEEECCCCCccccCccccccCCC
Confidence 346677777532 1123333333333 345543 77888888888743 78886632 234
Q ss_pred CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 89 gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
...-+..+.++.+. ..+|||.-.+......+.+|+.+||+..++-
T Consensus 336 ~~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 QATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 44566667777543 3689999999999999999999999988764
No 166
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=64.56 E-value=66 Score=33.12 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=64.5
Q ss_pred EEecCHHHHHHHHHHHHhCCCEEEE-----EC--CHHHHHHHHhcCCCCceEEEEeCCCCCC--CHHHHHHHHHhcccCC
Q 007462 36 LVEADDSTRQIVTALLRKSSYRVTA-----VP--DGLKAWEVLKGRPRNIDLILTEVDLPSI--SGFALLTLVMEHEICK 106 (603)
Q Consensus 36 LVDDD~~~r~lL~~lL~~~Gy~V~~-----A~--dg~eALe~L~~~~~~pDLVLlDl~MPgm--DGleLLr~Lr~~~~~~ 106 (603)
|..|.....++++.+- ..+..|.. .. +..+..+.+++.. .|.|.+|...|+. --++++++|++.- +
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~aG--ad~i~Vd~~~~g~~~a~~~~I~~i~~~~--~ 190 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDDG--FDGIHVDAMYPGKPYADMDLLKILSEEF--N 190 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHcC--CCEEEEeeCCCCCchhhHHHHHHHHHhc--C
Confidence 4556666666666665 33443332 11 2224445555543 8999999877764 2588888887642 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+|||..-+-.+.+.+.+++..||+...+
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 59999988888999999999999998865
No 167
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=64.53 E-value=49 Score=35.19 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhcccCCCCeEE--EEecCCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHHh
Q 007462 91 SGFALLTLVMEHEICKNIPVI--MMSSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHVWRR 153 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVI--mlSa~~d~~~~~~al~~GA~DyL~K-----P~~~~eL~~~L~~v~rr 153 (603)
-++++|+++.+. ..+||| ...+-...+.+..++++||+.+++- .-++.+....+...+..
T Consensus 184 ~~~elLkei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 588999999764 368998 6666779999999999999998643 34566655555554433
No 168
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=64.38 E-value=54 Score=34.87 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=60.1
Q ss_pred ECCHHHHHHHHhcCCCCceEEEEeC---------------------------------CC--CCCCHHHHHHHHHhcccC
Q 007462 61 VPDGLKAWEVLKGRPRNIDLILTEV---------------------------------DL--PSISGFALLTLVMEHEIC 105 (603)
Q Consensus 61 A~dg~eALe~L~~~~~~pDLVLlDl---------------------------------~M--PgmDGleLLr~Lr~~~~~ 105 (603)
+.+..||+...+.. +|+|=+=+ .. ...-++++|+++.+.
T Consensus 119 ~stleEal~a~~~G---ad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~--- 192 (283)
T cd04727 119 ARNLGEALRRISEG---AAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL--- 192 (283)
T ss_pred CCCHHHHHHHHHCC---CCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh---
Confidence 67888888888753 78777654 01 123478999999764
Q ss_pred CCCeEE--EEecCCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHHh
Q 007462 106 KNIPVI--MMSSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHVWRR 153 (603)
Q Consensus 106 ~~IPVI--mlSa~~d~~~~~~al~~GA~DyL~K-----P~~~~eL~~~L~~v~rr 153 (603)
..+||| ...+-...+.+.++++.||+.+++- .-++.+....+...+..
T Consensus 193 ~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 193 GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 258997 6666779999999999999999754 23455555555444433
No 169
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=64.25 E-value=51 Score=31.94 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=54.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC--CCEEEEECCH-------HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS--SYRVTAVPDG-------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~--Gy~V~~A~dg-------~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
..+|.++-..+.....+...|+.. |..++.+.++ ++.++.+.... |||||+-+.+|... .++.+.+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~~ 123 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG--PDIVFVGLGAPKQE--RWIARHRQ 123 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHHH
Confidence 479999999999999999999865 6677765443 44556666654 99999999999866 34555543
Q ss_pred cccCCCCeEEEEec
Q 007462 102 HEICKNIPVIMMSS 115 (603)
Q Consensus 102 ~~~~~~IPVImlSa 115 (603)
. -+.+|++..+
T Consensus 124 ~---l~~~v~i~vG 134 (172)
T PF03808_consen 124 R---LPAGVIIGVG 134 (172)
T ss_pred H---CCCCEEEEEC
Confidence 3 2345554443
No 170
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=63.98 E-value=77 Score=36.21 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=56.0
Q ss_pred CCEEEEEec----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEe--------------CCCCC
Q 007462 31 ALRVLLVEA----DDSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTE--------------VDLPS 89 (603)
Q Consensus 31 ~lrVLLVDD----D~~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlD--------------l~MPg 89 (603)
...++.||- .....+.++.+-+.. +..|.. +.+.+.|..+++.. .|.|.+. +..|.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aG---ad~I~vg~g~Gs~~~t~~~~~~g~p~ 329 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAG---ADGLRIGMGSGSICITQEVCAVGRPQ 329 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcC---CCEEEECCcCCcccccchhccCCCCh
Confidence 345566653 222233333333332 233433 45666666666542 5777543 22343
Q ss_pred CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 90 mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
..-+.-+.++.. ..++|||.=-+......+.+|+.+||+..++-
T Consensus 330 ~~ai~~~~~~~~---~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 330 ASAVYHVARYAR---ERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred HHHHHHHHHHHh---hcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 333222222211 13689887778888999999999999998865
No 171
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=63.95 E-value=14 Score=36.37 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=52.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCC--CCCCCH--HHHHHHHHhcccCCCCe
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSISG--FALLTLVMEHEICKNIP 109 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~--MPgmDG--leLLr~Lr~~~~~~~IP 109 (603)
|||||.....-..|.++|+..|+++..+.+-...++.+... .||.||+-=. -|.-++ .++++.+ ...+|
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~GPg~p~~~~~~~~~~~~~-----~~~~P 74 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISPGPCTPDEAGISLDVIRHY-----AGRLP 74 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcCCCCChHHCCccHHHHHHh-----cCCCC
Confidence 89999999999999999999999877765432123333332 3888877421 122222 2333332 24689
Q ss_pred EEEEecCCCHHHHHHHHHcCC
Q 007462 110 VIMMSSQDSVSTVYKCMMRGA 130 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA 130 (603)
|+-+.- ....-|..+|+
T Consensus 75 iLGICl----G~Q~la~a~Gg 91 (187)
T PRK08007 75 ILGVCL----GHQAMAQAFGG 91 (187)
T ss_pred EEEECH----HHHHHHHHcCC
Confidence 887662 33334445565
No 172
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=63.87 E-value=52 Score=34.83 Aligned_cols=111 Identities=20% Similarity=0.282 Sum_probs=68.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEE--CCHH----HHHHHHhcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcc
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAV--PDGL----KAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHE 103 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A--~dg~----eALe~L~~~~~~pDLVLlDl~MPgmD--GleLLr~Lr~~~ 103 (603)
.-++++||...++.+|..+=-.. .++.. .+.. ..+..++... -=.++.|..||..+ |+.|++..++.
T Consensus 31 ~D~iaaEDTR~t~~LL~~~~I~~--~~is~h~hne~~~~~~li~~l~~g~--~valVSDAG~P~ISDPG~~LV~~a~~~- 105 (275)
T COG0313 31 VDVIAAEDTRVTRKLLSHLGIKT--PLISYHEHNEKEKLPKLIPLLKKGK--SVALVSDAGTPLISDPGYELVRAAREA- 105 (275)
T ss_pred CCEEEEeccHHHHHHHHHhCCCC--ceecccCCcHHHHHHHHHHHHhcCC--eEEEEecCCCCcccCccHHHHHHHHHc-
Confidence 57899999999988776652211 12222 2333 3445555432 34677899999965 99999999764
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC---CCCHHHHHHHHHHH
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK---PVRRNELRNLWQHV 150 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K---P~~~~eL~~~L~~v 150 (603)
+++|+.+.+....-.+.-+-.+-.+.|+-. |-...+-+..++.+
T Consensus 106 ---gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l 152 (275)
T COG0313 106 ---GIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEAL 152 (275)
T ss_pred ---CCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHH
Confidence 689999998776555444333333444433 33344444444444
No 173
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=63.74 E-value=10 Score=38.99 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=46.7
Q ss_pred CccchHHhhhcCC----CEEEEEecCHHHHH----------HHHHHHHhCCCEEEEEC--CHHHHHHHHhcC---CCCce
Q 007462 19 GIAKWETFLQRMA----LRVLLVEADDSTRQ----------IVTALLRKSSYRVTAVP--DGLKAWEVLKGR---PRNID 79 (603)
Q Consensus 19 ~~v~we~fl~~m~----lrVLLVDDD~~~r~----------lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~---~~~pD 79 (603)
+--.||-+|-..- --|.|||.+..+.. -|...++..|++|+.+. |.++..+.+... ...|-
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~ 234 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPT 234 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCe
Confidence 4668999987653 35889998876654 36667778899988875 555555544432 23588
Q ss_pred EEEEeCCC
Q 007462 80 LILTEVDL 87 (603)
Q Consensus 80 LVLlDl~M 87 (603)
+||+|..+
T Consensus 235 ~IIa~Tvk 242 (243)
T COG3959 235 VIIAKTVK 242 (243)
T ss_pred EEEEeccc
Confidence 88887643
No 174
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=63.61 E-value=9.3 Score=37.42 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=46.2
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCC--CCCCCH--HHHHHHHHhcccCCCCe
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSISG--FALLTLVMEHEICKNIP 109 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~--MPgmDG--leLLr~Lr~~~~~~~IP 109 (603)
|||||.....-..|.++|+..|++|..+.+..--++.+... .||.||+-=. -|..++ +.+++.+ ...+|
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~-----~~~~P 74 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF-----ADKLP 74 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh-----cCCCC
Confidence 89999999999999999999999887766432122334332 3787776321 111222 2333332 24688
Q ss_pred EEEEe
Q 007462 110 VIMMS 114 (603)
Q Consensus 110 VImlS 114 (603)
|+-+.
T Consensus 75 iLGIC 79 (191)
T PRK06774 75 ILGVC 79 (191)
T ss_pred EEEEC
Confidence 88666
No 175
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=63.58 E-value=27 Score=34.18 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=45.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEE-Ee-CCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLIL-TE-VDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVL-lD-l~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
+||||||..+..-..|..+|+..|+++..+.....-.+.+. .+|.|| +- -..|...+ .+.+.|+. ...++|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~----~~d~iIi~gGp~~~~~~~-~~~~~i~~--~~~~~P 74 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE----NFSHILISPGPDVPRAYP-QLFAMLER--YHQHKS 74 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc----cCCEEEECCCCCChHHhh-HHHHHHHH--hcCCCC
Confidence 69999999988888899999999987666542111123332 267666 31 22121111 23344433 224689
Q ss_pred EEEEe
Q 007462 110 VIMMS 114 (603)
Q Consensus 110 VImlS 114 (603)
|+-+.
T Consensus 75 iLGIC 79 (190)
T PRK06895 75 ILGVC 79 (190)
T ss_pred EEEEc
Confidence 88766
No 176
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=63.30 E-value=37 Score=33.21 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=59.5
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCC-----CCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 007462 46 IVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS-----ISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 46 lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPg-----mDGleLLr~Lr~~~~~~~IPVImlSa~~d 118 (603)
..-..|+..|+.+.. +..+..-+..+.... ||.|-+|..+-. .....+++.|.......++. |+.++.++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCC
Confidence 344556788998765 456667777777654 999999964431 12345566554432223444 44678889
Q ss_pred HHHHHHHHHcCCc---E-EEeCCCCH
Q 007462 119 VSTVYKCMMRGAA---D-YLVKPVRR 140 (603)
Q Consensus 119 ~~~~~~al~~GA~---D-yL~KP~~~ 140 (603)
.+....+..+|++ + |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 9999999999985 4 35667643
No 177
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=62.94 E-value=55 Score=32.74 Aligned_cols=57 Identities=28% Similarity=0.365 Sum_probs=41.9
Q ss_pred hcCCCEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHhcCCCCceEEEEeC
Q 007462 28 QRMALRVLLVEADDSTRQIVTALLRKSSY--RVT-AVPDGLKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 28 ~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~-~A~dg~eALe~L~~~~~~pDLVLlDl 85 (603)
.+-..++++||-|......|+.-++.++. ++. ...|...++..+.... .||||++|-
T Consensus 63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~-~FDlVflDP 122 (187)
T COG0742 63 SRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTRE-PFDLVFLDP 122 (187)
T ss_pred hCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCC-cccEEEeCC
Confidence 34447999999999999999999988773 332 2345557776665432 499999995
No 178
>PRK04302 triosephosphate isomerase; Provisional
Probab=62.92 E-value=1.2e+02 Score=30.40 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=59.2
Q ss_pred CCCEEEEEecC------HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCC-CCC---------CC-
Q 007462 30 MALRVLLVEAD------DSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVD-LPS---------IS- 91 (603)
Q Consensus 30 m~lrVLLVDDD------~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~-MPg---------mD- 91 (603)
.....+|+.|. ......+... ...|+.++ ++.+.+++.. +... .+|+|-..-. .-+ -.
T Consensus 84 ~G~~~vii~~ser~~~~~e~~~~v~~a-~~~Gl~~I~~v~~~~~~~~-~~~~--~~~~I~~~p~~~igt~~~~~~~~~~~ 159 (223)
T PRK04302 84 AGAVGTLINHSERRLTLADIEAVVERA-KKLGLESVVCVNNPETSAA-AAAL--GPDYVAVEPPELIGTGIPVSKAKPEV 159 (223)
T ss_pred cCCCEEEEeccccccCHHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH-HhcC--CCCEEEEeCccccccCCCCCcCCHHH
Confidence 44455555552 1223333333 34688654 4556555554 3333 3677654311 001 11
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
-.++++.+++. ..++|||.-.+-...+.+..++..|++++|+-
T Consensus 160 i~~~~~~ir~~--~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 160 VEDAVEAVKKV--NPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 23555666643 24689999888889999999999999999865
No 179
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=62.38 E-value=1.3e+02 Score=32.37 Aligned_cols=109 Identities=12% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCEEEEEecCH--------HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADD--------STRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~--------~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
..+++||.+.+ .....+..+....+-.|.... +..+..+++.. .|++++=-...+.=|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 46788887632 233345555555555554432 45677777764 58888643333333566777763
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY-LVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~~al~~GA~Dy-L~KP~~~~eL~~~L~~v~r 152 (603)
..+|||... ... ..+.+..|..+| +..|.+.++|...|.+++.
T Consensus 300 -----~G~PVI~s~-~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 -----AGKPVLAST-KGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred -----cCCCEEEeC-CCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 367987643 332 234456688898 5679999999999988764
No 180
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=62.38 E-value=68 Score=33.40 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=68.9
Q ss_pred HHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 007462 46 IVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 46 lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
.++..|+..-..+-... .-.-..|++.... ||-+++|.+--..|.-.++.+|+.....+..|||=+. ..+..++.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aG--fDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATAG--FDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhcC--CCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCC-CCCHHHHH
Confidence 35666664333443322 2223446666544 9999999999999999999999887666667777544 46788899
Q ss_pred HHHHcCCcEEEeCCCCHHHHHHH
Q 007462 124 KCMMRGAADYLVKPVRRNELRNL 146 (603)
Q Consensus 124 ~al~~GA~DyL~KP~~~~eL~~~ 146 (603)
++++.||..+|+-=++..|-...
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~ 106 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQ 106 (255)
T ss_pred HHHccccceeeeeccCCHHHHHH
Confidence 99999999999876655443333
No 181
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=62.34 E-value=1e+02 Score=31.30 Aligned_cols=68 Identities=26% Similarity=0.303 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCC-H--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLPSIS-G--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MPgmD-G--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
..+.++.+.... -.|+++|+..-++. | +++++.|.+. ..+|||+-.+..+.+.+.+++.+|++..++-
T Consensus 148 ~~~~~~~~~~~~--~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 218 (233)
T cd04723 148 PEELLRRLAKWP--EELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALVA 218 (233)
T ss_pred HHHHHHHHHHhC--CeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEe
Confidence 566666665431 36999999776532 2 6778888653 4789999999999999999999999998853
No 182
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=62.14 E-value=28 Score=37.68 Aligned_cols=68 Identities=10% Similarity=0.001 Sum_probs=48.3
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+.+++.++++... .+|+|.+|...+... -.++++.|++. ++++|||+ -...+.+.+..++++||+..+
T Consensus 98 ~~~~~~~Lv~ag~-~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 98 EYDFVDQLAAEGL-TPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHHhcCC-CCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 3456667776421 259999999997644 57889999764 35666665 224478888999999999876
No 183
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=62.08 E-value=68 Score=34.41 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=55.9
Q ss_pred HHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEe-CCCC-----CC-CHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 48 TALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTE-VDLP-----SI-SGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 48 ~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlD-l~MP-----gm-DGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
-..|+..|..|+ .+.+..+|...++.. +|+|++- ..-- .. +-+.|+.+++.. .++|||.=-+-.+.
T Consensus 129 i~~l~~~gi~v~~~v~s~~~A~~a~~~G---~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iPViaAGGI~dg 202 (330)
T PF03060_consen 129 IERLHAAGIKVIPQVTSVREARKAAKAG---ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIPVIAAGGIADG 202 (330)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--SH
T ss_pred HHHHHHcCCccccccCCHHHHHHhhhcC---CCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCcEEEecCcCCH
Confidence 355677787655 589999999887753 8998875 2211 22 357777888654 35999998888899
Q ss_pred HHHHHHHHcCCcEEEeC
Q 007462 120 STVYKCMMRGAADYLVK 136 (603)
Q Consensus 120 ~~~~~al~~GA~DyL~K 136 (603)
..+..++.+||++..+-
T Consensus 203 ~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 203 RGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHHHCT-SEEEES
T ss_pred HHHHHHHHcCCCEeecC
Confidence 99999999999998754
No 184
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=61.91 E-value=28 Score=34.04 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=58.5
Q ss_pred EEEEEecCHHHHHHHHHHH----HhCCC---EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 33 RVLLVEADDSTRQIVTALL----RKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL----~~~Gy---~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
-|||=|.+-...-.+...+ +..+. -.+.+.+.+++.+.++.. +|+|.+|-.-| -+--++++.|+...
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g---~d~I~lD~~~~-~~~~~~v~~l~~~~-- 125 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAG---ADIIMLDNMSP-EDLKEAVEELRELN-- 125 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT----SEEEEES-CH-HHHHHHHHHHHHHT--
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhC---CCEEEecCcCH-HHHHHHHHHHhhcC--
Confidence 4555555555443344443 22332 234588999999999853 89999996544 23334444443332
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
++ ..|..|+--..+.+.+....|++.|-+
T Consensus 126 ~~-v~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 126 PR-VKIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp TT-SEEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred Cc-EEEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 33 677788888888888999999877654
No 185
>PLN02591 tryptophan synthase
Probab=61.66 E-value=27 Score=36.32 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+.+++++++|.. .++|+|+|+-+. -.....+|.++|+++.|+-.+..+|....+..+..
T Consensus 65 ~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 467888888742 478999998765 34557889999999999999998888877766643
No 186
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=61.36 E-value=86 Score=32.28 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 43 TRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MP-----gmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
....+-..|+..|+.+.. +.+|-..+.+|..-. ||+|=+|-.+- ......+++.|-.....-++.|| .-+
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vv-aEG 213 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV-AEG 213 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEE-Eee
Confidence 344455556788987654 889999999998755 99998886432 23344667766543322344444 456
Q ss_pred CCCHHHHHHHHHcCCc---E-EEeCCCCHHHHHHHHH
Q 007462 116 QDSVSTVYKCMMRGAA---D-YLVKPVRRNELRNLWQ 148 (603)
Q Consensus 116 ~~d~~~~~~al~~GA~---D-yL~KP~~~~eL~~~L~ 148 (603)
....+.+..+.++|++ + |+.||...+++...+.
T Consensus 214 VEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 214 VETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred cCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 6788888888899976 3 4688999877776554
No 187
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=60.78 E-value=73 Score=33.16 Aligned_cols=107 Identities=9% Similarity=0.108 Sum_probs=67.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
...+++||.+.+... .+...+ .....+...-+.++..+++.. .|++|+-.. ..-|+-+++.+. ..+|
T Consensus 220 ~~~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama-----~G~P 286 (351)
T cd03804 220 LGKRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA-----SGTP 286 (351)
T ss_pred CCCcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH-----cCCC
Confidence 347888888876533 333311 122334444567777888864 577776543 334666777764 3579
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||...... ..+.+..|..++++.|-+.++|...|..++..
T Consensus 287 vi~~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 287 VIAYGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred EEEeCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 98754322 22334567789999999999999999888654
No 188
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=60.63 E-value=17 Score=37.86 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=39.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHhcCCCCceEEEEeCCCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVP-------DGLKAWEVLKGRPRNIDLILTEVDLP 88 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-------dg~eALe~L~~~~~~pDLVLlDl~MP 88 (603)
|||||+...-.+...|...|...|++|+... +..+..+++.... ||+||-=..+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~ 62 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYT 62 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceee
Confidence 5999999999999999999999999888762 5566667776644 99998655443
No 189
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=60.45 E-value=73 Score=33.80 Aligned_cols=102 Identities=14% Similarity=0.222 Sum_probs=61.0
Q ss_pred EEEEEe--cCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------HhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 33 RVLLVE--ADDSTR---QIVTALLRKSSYRVTAVPDGLKAWEV-------LKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 33 rVLLVD--DD~~~r---~lL~~lL~~~Gy~V~~A~dg~eALe~-------L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
+|+||- +.+... ..+..+|+..|+++....+....+.. .+.....+|+||+ -|.|| .+|+.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDG-t~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDG-TMLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcH-HHHHHHH
Confidence 488773 333333 44555566778887664432221110 0111123788887 37787 3556665
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
... ..++||+-+. .|=.+||. .+..+++...|.++....
T Consensus 82 ~~~-~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 82 QLA-PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred Hhc-CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 432 2578988554 56678888 788999999999887543
No 190
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=60.37 E-value=74 Score=37.04 Aligned_cols=97 Identities=14% Similarity=0.246 Sum_probs=59.3
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
+.+....+++||.|+...+.++ +.|+.++..+ +-.+.|+.+.- .+.|+||+-..-+ .+-+.++..+|+. .
T Consensus 419 L~~~g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~-~~n~~i~~~~r~~--~ 489 (601)
T PRK03659 419 LMANKMRITVLERDISAVNLMR----KYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEP-EDTMKIVELCQQH--F 489 (601)
T ss_pred HHhCCCCEEEEECCHHHHHHHH----hCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCH-HHHHHHHHHHHHH--C
Confidence 4455677888888877655443 3577666543 33445554432 2367777654332 2345566666653 3
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
++++||+-+. +.....+..++||+..+
T Consensus 490 p~~~IiaRa~--~~~~~~~L~~~Ga~~vv 516 (601)
T PRK03659 490 PHLHILARAR--GRVEAHELLQAGVTQFS 516 (601)
T ss_pred CCCeEEEEeC--CHHHHHHHHhCCCCEEE
Confidence 7788876554 55667778889998776
No 191
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=60.24 E-value=1.7e+02 Score=30.41 Aligned_cols=110 Identities=12% Similarity=0.121 Sum_probs=64.0
Q ss_pred HHhhhcC---CCEEEEEecCH-HHHHHHHHHHHhCCCEEE-EE--CCHHHHHHHHhcCCCCceEEEEeCCCCCC------
Q 007462 24 ETFLQRM---ALRVLLVEADD-STRQIVTALLRKSSYRVT-AV--PDGLKAWEVLKGRPRNIDLILTEVDLPSI------ 90 (603)
Q Consensus 24 e~fl~~m---~lrVLLVDDD~-~~r~lL~~lL~~~Gy~V~-~A--~dg~eALe~L~~~~~~pDLVLlDl~MPgm------ 90 (603)
|+|+... ....+|+-|.+ .....+...+++.|...+ .+ .+..+-++.+......+..++.=..-.|.
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~ 184 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAAS 184 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCCh
Confidence 5555443 34545555544 445566666777887644 22 23344444444333235555541111111
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+-.+.+++|++. .++||++=-+-.+.+.+.++.+.||+.+++-
T Consensus 185 ~~~~~i~~lr~~---~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 185 ALNELVKRLKAY---SAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred hHHHHHHHHHhh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 245677777654 3568776445567999999999999999986
No 192
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.06 E-value=82 Score=35.18 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=57.3
Q ss_pred CCCEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCC-CCCC--CHHHHHHHHHhcc
Q 007462 30 MALRVLLVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD-LPSI--SGFALLTLVMEHE 103 (603)
Q Consensus 30 m~lrVLLVDDD~~~---r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~-MPgm--DGleLLr~Lr~~~ 103 (603)
...+|++|+-|+.. ...|..+-+..|+.+..+.+..+....+.... .+|+||+|.. +... ..++.+..+....
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 35799999998842 23444445556777766677766666665433 4899999962 1112 2334444443311
Q ss_pred cCCCCeEEEEecCCCHHHHHHH---H-HcCCcEEE
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKC---M-MRGAADYL 134 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~a---l-~~GA~DyL 134 (603)
..+.-.++++++......+.++ + ..+.+.+|
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI 363 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLI 363 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 1122336667776554444333 2 34555554
No 193
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=60.01 E-value=64 Score=37.80 Aligned_cols=98 Identities=14% Similarity=0.240 Sum_probs=59.9
Q ss_pred hhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 26 fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
.+.+....+.+||.|+...+.+++ .|+.++..+ +-.+.++...- .+.|+||+-..-+. .-+.++..+++.
T Consensus 418 ~L~~~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi--~~A~~vvv~~~d~~-~n~~i~~~ar~~-- 488 (621)
T PRK03562 418 LLLSSGVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQ-TSLQLVELVKEH-- 488 (621)
T ss_pred HHHhCCCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcCC--CcCCEEEEEeCCHH-HHHHHHHHHHHh--
Confidence 345556788888888876655543 577766543 33334444332 24777877653332 235555666554
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
.++++||+-+. +.....+..+.||+..+
T Consensus 489 ~p~~~iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 FPHLQIIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred CCCCeEEEEEC--CHHHHHHHHHCCCCEEe
Confidence 47888876553 55667788889998654
No 194
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.85 E-value=75 Score=35.43 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCEEEEEec---CHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 31 ALRVLLVEA---DDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 31 ~lrVLLVDD---D~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
.++++||.+ ++.....++++++..|. .|.... ..+..+++.. .|++++-... ..-|+-+++.+.
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~~-Eg~p~~vlEAma----- 392 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSIS-EGQPLVILEAMA----- 392 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCchh-hcCChHHHHHHH-----
Confidence 467777754 34556667777776665 344433 4444555542 6888875432 334677888774
Q ss_pred CCCeEEEEecCCCHHHHHHHHHc------CCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMR------GAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~------GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
..+|||. |...... +.+.. |..++++.|-+.++|...|..++.
T Consensus 393 ~G~PVVa-td~g~~~---elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 393 AGIPVVA-TDVGSCR---ELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred cCCCEEE-CCCCChH---HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 3578876 4433333 33333 778999999999999999998764
No 195
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=59.78 E-value=90 Score=30.92 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=56.2
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHhcCCCCceEEEEe-CCCCC-CCHHHHHHHHHhccc
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVP-------DGLKAWEVLKGRPRNIDLILTE-VDLPS-ISGFALLTLVMEHEI 104 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-------dg~eALe~L~~~~~~pDLVLlD-l~MPg-mDGleLLr~Lr~~~~ 104 (603)
|||-|-|...++.+...-++.|-+++..+ +|.+.++++....+.|=+|.+| -..++ ..|-+.|+.+..+
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h-- 80 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANH-- 80 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcC--
Confidence 56666688888888888888999988754 8999999999887666666664 44554 4578888888765
Q ss_pred CCCCeEEE
Q 007462 105 CKNIPVIM 112 (603)
Q Consensus 105 ~~~IPVIm 112 (603)
++|-|+-
T Consensus 81 -~~IeVLG 87 (180)
T PF14097_consen 81 -PDIEVLG 87 (180)
T ss_pred -CCceEEE
Confidence 4555553
No 196
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=59.73 E-value=17 Score=37.73 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=39.3
Q ss_pred hcCCCEEEEEe------cCH--HHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEe
Q 007462 28 QRMALRVLLVE------ADD--STRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE 84 (603)
Q Consensus 28 ~~m~lrVLLVD------DD~--~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlD 84 (603)
|+|+++|.|+- .+. .....+...|++.||+|..+....+.+..+... .||+||.=
T Consensus 1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~--~~D~v~~~ 63 (304)
T PRK01372 1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKEL--GFDRVFNA 63 (304)
T ss_pred CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccC--CCCEEEEe
Confidence 46778888887 222 245677788889999988876556677777654 48999964
No 197
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=59.56 E-value=36 Score=33.26 Aligned_cols=91 Identities=14% Similarity=0.214 Sum_probs=59.4
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCC-----CCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 47 VTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS-----ISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 47 L~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPg-----mDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
+-..|+..|+.+.. +..+...++.+..-. ||.|-+|..+.. .....+++.|.......+++| +.++.++.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKV-VAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeE-EEEecCCH
Confidence 44446778998776 456677777777654 999999964431 234556666544322234444 56888999
Q ss_pred HHHHHHHHcCCc---EE-EeCCCCH
Q 007462 120 STVYKCMMRGAA---DY-LVKPVRR 140 (603)
Q Consensus 120 ~~~~~al~~GA~---Dy-L~KP~~~ 140 (603)
.....+..+|++ +| +.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 999999999984 33 4566643
No 198
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=59.51 E-value=56 Score=30.49 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=60.8
Q ss_pred hhhcCCCEEEEEecCHH-----HHHHHHHHHHhC-CCEEEE-ECCHHHHHHH-HhcCCCCceEEEEeCCCCCCCH-----
Q 007462 26 FLQRMALRVLLVEADDS-----TRQIVTALLRKS-SYRVTA-VPDGLKAWEV-LKGRPRNIDLILTEVDLPSISG----- 92 (603)
Q Consensus 26 fl~~m~lrVLLVDDD~~-----~r~lL~~lL~~~-Gy~V~~-A~dg~eALe~-L~~~~~~pDLVLlDl~MPgmDG----- 92 (603)
++.......+.|..... ..+.+..+-+.. +..+.. +....+.... +... ..|.|.++-..+...+
T Consensus 79 ~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~--g~d~i~~~~~~~~~~~~~~~~ 156 (200)
T cd04722 79 AARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEA--GVDEVGLGNGGGGGGGRDAVP 156 (200)
T ss_pred HHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHc--CCCEEEEcCCcCCCCCccCch
Confidence 44455555555555442 445555555443 454433 2211211111 3332 3799988877765432
Q ss_pred --HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 93 --FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 93 --leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
...+..++. ...+|||...+....+.+.+++..||+.+++
T Consensus 157 ~~~~~~~~~~~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 157 IADLLLILAKR---GSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred hHHHHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 234444433 2578999988888878899999999988764
No 199
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=59.03 E-value=1.3e+02 Score=31.65 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEE------EeCCCCHHHHHHHHHHHHHh
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY------LVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~Dy------L~KP~~~~eL~~~L~~v~rr 153 (603)
.++++.+|++. -++|||...+..+.+.+.+++..||+.. |..|.-...++.-+.+.+.+
T Consensus 222 ~l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 222 ALRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred cHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 36788888764 2699999999999999999999998654 22355555555555555443
No 200
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=58.42 E-value=32 Score=36.94 Aligned_cols=80 Identities=28% Similarity=0.402 Sum_probs=62.8
Q ss_pred cCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHh--CCC---EEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCC
Q 007462 16 GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK--SSY---RVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89 (603)
Q Consensus 16 ~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~--~Gy---~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPg 89 (603)
+.++.|-=|..+++..-.|+++|-|..+.+.=+.+|.. +|| +|. ...||..-++.+.+.. +|+||+|..-|.
T Consensus 130 ggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~--~dVii~dssdpv 207 (337)
T KOG1562|consen 130 GGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP--FDVIITDSSDPV 207 (337)
T ss_pred cCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC--ceEEEEecCCcc
Confidence 44566666778887778999999999999998888874 466 232 2459999999887655 999999999999
Q ss_pred CCHHHHHH
Q 007462 90 ISGFALLT 97 (603)
Q Consensus 90 mDGleLLr 97 (603)
+.+-.+..
T Consensus 208 gpa~~lf~ 215 (337)
T KOG1562|consen 208 GPACALFQ 215 (337)
T ss_pred chHHHHHH
Confidence 98876654
No 201
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=58.38 E-value=82 Score=31.50 Aligned_cols=101 Identities=22% Similarity=0.344 Sum_probs=56.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC--CC-------------EEEEECCHHHHHHHHhcC-CCCceEEEEeCC-CCCCCHHH
Q 007462 32 LRVLLVEADDSTRQIVTALLRKS--SY-------------RVTAVPDGLKAWEVLKGR-PRNIDLILTEVD-LPSISGFA 94 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~--Gy-------------~V~~A~dg~eALe~L~~~-~~~pDLVLlDl~-MPgmDGle 94 (603)
-+..||..-+.+++++..+|..+ |+ .|..+.+.++|++.+++. ...|-+|.+|.. -|+.=.++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~ 122 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA 122 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH
Confidence 47799999999999999999743 32 266789999999888642 234899999998 56666777
Q ss_pred HHHHHHhcccCCCCeEEEE--ecCCCHHHHHHHHHcCCcEEEeCCCCH
Q 007462 95 LLTLVMEHEICKNIPVIMM--SSQDSVSTVYKCMMRGAADYLVKPVRR 140 (603)
Q Consensus 95 LLr~Lr~~~~~~~IPVIml--Sa~~d~~~~~~al~~GA~DyL~KP~~~ 140 (603)
-++++.... +-|++++ |+..-...+ +...||++.|+.-
T Consensus 123 ~lr~~l~~~---~~P~LllFGTGwGL~~ev-----~~~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEEE---DRPVLLLFGTGWGLAPEV-----MEQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH-----S-EEEEE--TT---HHH-----HTT-SEEB--TTT
T ss_pred HHHHHHhcc---CCeEEEEecCCCCCCHHH-----HHhcCeeEccccc
Confidence 676664222 3466555 555433333 2456899999864
No 202
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.13 E-value=1.1e+02 Score=32.42 Aligned_cols=93 Identities=17% Similarity=0.062 Sum_probs=60.0
Q ss_pred EEEEEecCHHHH--H--HHHHHH----HhCCC--E-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 33 RVLLVEADDSTR--Q--IVTALL----RKSSY--R-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 33 rVLLVDDD~~~r--~--lL~~lL----~~~Gy--~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
.|||=|.+-... - .+...+ +..++ . .+.+.+.+++.+.++. .+|+|++| +|+--+--+++..++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLD-n~s~e~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLD-NFSLDDLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEEC-CCCHHHHHHHHHHhC-
Confidence 577777775542 1 233333 33443 2 4568999999999975 38999999 333323333333332
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
...+|-.|+-...+.+.+.-..|+|-.-+
T Consensus 236 -----~~~~leaSGgI~~~ni~~yA~tGVD~Is~ 264 (281)
T PRK06543 236 -----GRAIVEASGNVNLNTVGAIASTGVDVISV 264 (281)
T ss_pred -----CCeEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 22478888989999999998999875543
No 203
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.89 E-value=1.3e+02 Score=33.65 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=58.2
Q ss_pred CCCEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC--CCceEEEEeCCCCCC--CHHHHHHHHHhc
Q 007462 30 MALRVLLVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRP--RNIDLILTEVDLPSI--SGFALLTLVMEH 102 (603)
Q Consensus 30 m~lrVLLVDDD~~~---r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~--~~pDLVLlDl~MPgm--DGleLLr~Lr~~ 102 (603)
...+|.+|+-|+.- ...|+.+-...|+.+..+.++.+..+.+.... ..+|+||+|.. |. .--+++..|...
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA--Gr~~~d~~~l~EL~~l 310 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV--GRNYLAEESVSEISAY 310 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC--CCCccCHHHHHHHHHH
Confidence 35789999998752 44566666667776766777766555443211 24899999973 32 122334443321
Q ss_pred --ccCCCCeEEEEecCCCHHHHHHHH----HcCCcEEEeC
Q 007462 103 --EICKNIPVIMMSSQDSVSTVYKCM----MRGAADYLVK 136 (603)
Q Consensus 103 --~~~~~IPVImlSa~~d~~~~~~al----~~GA~DyL~K 136 (603)
...++..++++++......+...+ ..+.+.+|.-
T Consensus 311 ~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~T 350 (407)
T PRK12726 311 TDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIIT 350 (407)
T ss_pred hhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEE
Confidence 122344455666644444444432 3566676543
No 204
>CHL00101 trpG anthranilate synthase component 2
Probab=57.71 E-value=25 Score=34.57 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=46.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeC--CCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV--DLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl--~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
|||||.....-..|.+.|+..|+.+..+......+..+... .||.||+-= ..|..++ +...|.+. ....+||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiiisgGpg~~~~~~--~~~~i~~~-~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIIISPGPGHPRDSG--ISLDVISS-YAPYIPIL 76 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEECCCCCChHHCc--chHHHHHH-hcCCCcEE
Confidence 89999999999999999999999887766443222223222 388777521 1111122 22233221 22468988
Q ss_pred EEe
Q 007462 112 MMS 114 (603)
Q Consensus 112 mlS 114 (603)
-+.
T Consensus 77 GIC 79 (190)
T CHL00101 77 GVC 79 (190)
T ss_pred EEc
Confidence 666
No 205
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.40 E-value=1e+02 Score=32.77 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=61.1
Q ss_pred hcCCCEEEEEec--CH---HHHHHHHHHHHhCCCEEEEECCHHHHHH-----H--HhcCCCCceEEEEeCCCCCCCHHHH
Q 007462 28 QRMALRVLLVEA--DD---STRQIVTALLRKSSYRVTAVPDGLKAWE-----V--LKGRPRNIDLILTEVDLPSISGFAL 95 (603)
Q Consensus 28 ~~m~lrVLLVDD--D~---~~r~lL~~lL~~~Gy~V~~A~dg~eALe-----~--L~~~~~~pDLVLlDl~MPgmDGleL 95 (603)
|.| .+|+||-. .+ .....+..+|+..|+++.......+.+. . .......+|+||+= |.||. +
T Consensus 2 ~~~-~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~----GGDGt-~ 75 (295)
T PRK01231 2 PSF-RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVV----GGDGS-L 75 (295)
T ss_pred CCC-CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEE----eCcHH-H
Confidence 444 36777732 33 3344556667778888776443222111 0 01011137888762 67773 4
Q ss_pred HHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 96 LTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 96 Lr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|+.++... ..++||+-+.. |=.+|| -.++.+++...|..++...
T Consensus 76 l~~~~~~~-~~~~Pvlgin~-------------G~lGFl-~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 76 LGAARALA-RHNVPVLGINR-------------GRLGFL-TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HHHHHHhc-CCCCCEEEEeC-------------Cccccc-ccCCHHHHHHHHHHHHcCC
Confidence 44443321 35789886653 666778 4688999999999887543
No 206
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=57.26 E-value=51 Score=41.76 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=68.9
Q ss_pred CEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCC-CCC-HHHHHHHHHhc
Q 007462 32 LRVLLV----EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLP-SIS-GFALLTLVMEH 102 (603)
Q Consensus 32 lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MP-gmD-GleLLr~Lr~~ 102 (603)
-+|||. |-+..=..++.-+|+..||+|+... ..++.++.+++.. +|+|.+-..|. .+. -.++++.|++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 578887 7788888888888999999998742 5677777777654 99999877665 344 35777888765
Q ss_pred ccCCCCeEEEEecCCCHHH-HHHH--HHcCCcEEEeC
Q 007462 103 EICKNIPVIMMSSQDSVST-VYKC--MMRGAADYLVK 136 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~-~~~a--l~~GA~DyL~K 136 (603)
. .++||++--+..+... ..++ --.|++.|-.-
T Consensus 830 g--~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~D 864 (1229)
T PRK09490 830 G--FTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTD 864 (1229)
T ss_pred C--CCCeEEEEeeccchhhhhhhhhhcccCCcEEecC
Confidence 3 5788887665544333 1111 11288777653
No 207
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.22 E-value=1.4e+02 Score=33.27 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=63.5
Q ss_pred CCCEEEEEec---C-HHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCC--------------C
Q 007462 30 MALRVLLVEA---D-DSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL--------------P 88 (603)
Q Consensus 30 m~lrVLLVDD---D-~~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~M--------------P 88 (603)
...-|++||- + ......++.+=... +..++. +.+.++|..+++.. .|.|.+-+.- |
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG---aD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG---ADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC---CCEEEECCCCCcCCcceeecCCCCC
Confidence 4567888775 2 23333333332232 233433 77999999888753 7988754321 2
Q ss_pred CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 89 gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
...-+..+.++.. ...+|||+=.+......+.+|+.+||+..++-
T Consensus 241 ~ltai~~v~~~~~---~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCK---NTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHh---hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 2223333344322 13689998888899999999999999998764
No 208
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=57.11 E-value=1.3e+02 Score=32.07 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=62.0
Q ss_pred EEEEEecCHHHHHHHHHHHH----hCCCEE---EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 33 RVLLVEADDSTRQIVTALLR----KSSYRV---TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~----~~Gy~V---~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
-|||=|.+-...-.+...++ ..+|.+ +.+++.+++.++++.. +|||++|-+-| -++-+.+.... .
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag---aDiImLDNm~~----e~~~~av~~l~-~ 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG---ADIIMLDNMSP----EELKEAVKLLG-L 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC---CCEEEecCCCH----HHHHHHHHHhc-c
Confidence 46666666655554666654 346532 4588999999999864 79999994333 23333222211 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
..-.++=.|+.-..+.+...-..|++-+-+
T Consensus 232 ~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~ 261 (280)
T COG0157 232 AGRALLEASGGITLENIREYAETGVDVISV 261 (280)
T ss_pred CCceEEEEeCCCCHHHHHHHhhcCCCEEEe
Confidence 334667778888999999998999876644
No 209
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=57.11 E-value=43 Score=33.10 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=35.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl 83 (603)
|+|+|||-.......+..+|+..|+++....+.. .+. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~----~~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPE----EIL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHH----HHc----cCCEEEE
Confidence 5899999999999999999999999988887542 222 3898887
No 210
>PRK14098 glycogen synthase; Provisional
Probab=57.01 E-value=1.4e+02 Score=33.85 Aligned_cols=112 Identities=8% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCEEEEEecCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADD-STRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~-~~r~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+++||.+-+ .....|+++....+-.|. ..-+..++.+++.. .|++|+=- ...--|+..++.++. .
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS-~~E~~Gl~~lEAma~-----G 405 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPG-KIESCGMLQMFAMSY-----G 405 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCC-CCCCchHHHHHHHhC-----C
Confidence 57888888643 345677777665543333 33355555666653 58887532 223457777777743 3
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|+|+...-.-.+.+......+..+|+..|.+.++|...|.+++.
T Consensus 406 ~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 406 TIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred CCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 455543322222222222223678999999999999999887653
No 211
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=56.97 E-value=42 Score=34.88 Aligned_cols=59 Identities=24% Similarity=0.270 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~d------~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+.+++++.|++.. .++|+++|+-+.. ...+.+|.++|++++|.-....+++...+..+.
T Consensus 73 ~~~~~v~~ir~~~--~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 73 KCFELLKKVRQKH--PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 4677788887532 4789888887664 677889999999999998888888776666553
No 212
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=56.75 E-value=79 Score=32.84 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=59.7
Q ss_pred EEecCHHHHHHHHH------------HHHhCCCEEEE----------ECCHHHHHHHHhcCCCCceEEEEeCCCCC----
Q 007462 36 LVEADDSTRQIVTA------------LLRKSSYRVTA----------VPDGLKAWEVLKGRPRNIDLILTEVDLPS---- 89 (603)
Q Consensus 36 LVDDD~~~r~lL~~------------lL~~~Gy~V~~----------A~dg~eALe~L~~~~~~pDLVLlDl~MPg---- 89 (603)
+|.|+..+..+... +|.+.|.+|+. ..-..+|+++|.+.. ||.+++++-||-
T Consensus 118 fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~--~DalVl~vliPtpGtk 195 (275)
T COG1856 118 FVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYE--PDALVLVVLIPTPGTK 195 (275)
T ss_pred ecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCC--CCeEEEEEEecCCchh
Confidence 45677777665432 34556665432 235678999998765 999999999983
Q ss_pred C------CHHHHHHHHH-hcccCCCCeEEEEecCC----CHHHHHHHHHcCCcEEEeCCCC
Q 007462 90 I------SGFALLTLVM-EHEICKNIPVIMMSSQD----SVSTVYKCMMRGAADYLVKPVR 139 (603)
Q Consensus 90 m------DGleLLr~Lr-~~~~~~~IPVImlSa~~----d~~~~~~al~~GA~DyL~KP~~ 139 (603)
| +--|.++.++ ++...++ ||++=.++- -...-..+..+|++ -|++|.+
T Consensus 196 m~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd-~It~P~~ 254 (275)
T COG1856 196 MGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVD-RITFPPR 254 (275)
T ss_pred ccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCc-eeecCCc
Confidence 1 2234444443 2234566 887765543 23334455666664 5667654
No 213
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=56.50 E-value=1.1e+02 Score=32.46 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=50.8
Q ss_pred EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 58 V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+.+.+.++|.+.++.. +|+|++| +|+--+-.++++.|+... ++ .+|-.|+--..+.+......|++-+.+
T Consensus 192 eVEv~tleea~ea~~~G---aDiI~lD-n~~~e~l~~~v~~l~~~~--~~-~~leasGGI~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 192 TVEADTIEQALTVLQAS---PDILQLD-KFTPQQLHHLHERLKFFD--HI-PTLAAAGGINPENIADYIEAGIDLFIT 262 (277)
T ss_pred EEECCCHHHHHHHHHcC---cCEEEEC-CCCHHHHHHHHHHHhccC--CC-EEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 45678999999999753 8999999 454444445555554211 23 467778888999999999999877654
No 214
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.39 E-value=76 Score=30.73 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=57.9
Q ss_pred hHHhhhcC---CCEEEEEecCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 007462 23 WETFLQRM---ALRVLLVEADDSTRQIVTALLRKS--SYRVTAVP-------DGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (603)
Q Consensus 23 we~fl~~m---~lrVLLVDDD~~~r~lL~~lL~~~--Gy~V~~A~-------dg~eALe~L~~~~~~pDLVLlDl~MPgm 90 (603)
++.++... ..+|.++-..+.+...+...|+.. |.+++... +..+.++.+.... ||+||+-+.+|..
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~--pdiv~vglG~PkQ 112 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG--ADILFVGLGAPKQ 112 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHH
Confidence 44444443 479999999999999998888765 55666532 2233467777654 9999999999987
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEec
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
.- ++.+++..- +.+|++..+
T Consensus 113 E~--~~~~~~~~l---~~~v~~~vG 132 (171)
T cd06533 113 EL--WIARHKDRL---PVPVAIGVG 132 (171)
T ss_pred HH--HHHHHHHHC---CCCEEEEec
Confidence 73 445554332 456665543
No 215
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=56.30 E-value=1.2e+02 Score=31.21 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCceE-EEEeCCC----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcC-CcEEEe---
Q 007462 65 LKAWEVLKGRPRNIDL-ILTEVDL----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLV--- 135 (603)
Q Consensus 65 ~eALe~L~~~~~~pDL-VLlDl~M----PgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~G-A~DyL~--- 135 (603)
.+..+.+.+.. +|. +++|+.- ++. -+++++++++. .++|||..-+..+.+.+.+++..| |+..++
T Consensus 158 ~~~~~~l~~~G--~~~iivt~i~~~g~~~g~-~~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 158 VEWAKEVEKLG--AGEILLTSMDKDGTKSGY-DLELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred HHHHHHHHHcC--CCEEEEeCcCcccCCCCC-CHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 34445555443 674 4445422 222 26888888765 379999999999999999999988 888654
Q ss_pred ---CCCCHHHHHHHHH
Q 007462 136 ---KPVRRNELRNLWQ 148 (603)
Q Consensus 136 ---KP~~~~eL~~~L~ 148 (603)
+-++..+++..+.
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 232 FHYREITIGEVKEYLA 247 (254)
T ss_pred HhCCCCCHHHHHHHHH
Confidence 3455555554443
No 216
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.15 E-value=98 Score=31.36 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=40.6
Q ss_pred EEeCCCCCCCHHHHHHHHHhcccCCCC--eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 007462 82 LTEVDLPSISGFALLTLVMEHEICKNI--PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (603)
Q Consensus 82 LlDl~MPgmDGleLLr~Lr~~~~~~~I--PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L 147 (603)
++++.|-.-++++.++.|++.. +.- -+|=.-..-+.+.+.++.++||. ||+-|.-..++....
T Consensus 41 ~iEit~~~~~a~~~i~~l~~~~--~~~p~~~vGaGTV~~~~~~~~a~~aGA~-FivsP~~~~~v~~~~ 105 (213)
T PRK06552 41 AIEVTYTNPFASEVIKELVELY--KDDPEVLIGAGTVLDAVTARLAILAGAQ-FIVSPSFNRETAKIC 105 (213)
T ss_pred EEEEECCCccHHHHHHHHHHHc--CCCCCeEEeeeeCCCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 4445555556788888886542 221 23333345688899999999995 777787777766543
No 217
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=55.88 E-value=1.4e+02 Score=32.60 Aligned_cols=104 Identities=11% Similarity=0.175 Sum_probs=63.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC-CCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
.+||.||.- ..-...+..+.+.. +++++.+ . +.+.|-+..+... +. +..| --+++ .. .+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g--i~-~y~~-------~eell----~d---~D 64 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG--VP-LYCE-------VEELP----DD---ID 64 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC--CC-ccCC-------HHHHh----cC---CC
Confidence 478999998 54444454454444 6787664 3 4454544444321 11 2222 11222 11 35
Q ss_pred CeEEEEec----CCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSS----QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa----~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+-+|.+.. ....+.+.+|++.|..=++-||+..+|...+++.+.+
T Consensus 65 i~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 65 IACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 66666622 3568899999999999999999998887777766543
No 218
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.79 E-value=2e+02 Score=30.47 Aligned_cols=99 Identities=9% Similarity=0.163 Sum_probs=60.8
Q ss_pred hcCCC--EEEEEecCHHHHHHHHHHH----HhCCC--E-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 28 QRMAL--RVLLVEADDSTRQIVTALL----RKSSY--R-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 28 ~~m~l--rVLLVDDD~~~r~lL~~lL----~~~Gy--~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
+|+.+ -|||=|.+-.....+...+ ....+ . .+.+.+.+||++.++.. +|+|.+|= |+ ++.+++
T Consensus 147 HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~G---aDiI~LDn----~~-~e~l~~ 218 (273)
T PRK05848 147 HRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAG---ADIVMCDN----MS-VEEIKE 218 (273)
T ss_pred ccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcC---CCEEEECC----CC-HHHHHH
Confidence 44444 3555555544443444444 33443 2 34588999999999753 79999983 23 333333
Q ss_pred HHhc--ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 99 VMEH--EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 99 Lr~~--~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+... ...+++ +|..++.-+.+.+.+....|++-+.+
T Consensus 219 ~v~~~~~~~~~~-~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 219 VVAYRNANYPHV-LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred HHHHhhccCCCe-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3222 111333 56677778999999999999987754
No 219
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=55.75 E-value=1.2e+02 Score=31.39 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=48.5
Q ss_pred EEEEEecCH----HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 33 RVLLVEADD----STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 33 rVLLVDDD~----~~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
+|.+|.++. .....+...++..|++|+.. .+....+..|+... +|+||+.. ...+...+++++++
T Consensus 143 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~--~d~i~~~~--~~~~~~~~~~~~~~ 218 (345)
T cd06338 143 KVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAG--PDAVVVAG--HFPDAVLLVRQMKE 218 (345)
T ss_pred eEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcC--CCEEEECC--cchhHHHHHHHHHH
Confidence 444444433 34455667778889887641 35556677776544 89999754 34577888898876
Q ss_pred cccCCCCeEEEEec
Q 007462 102 HEICKNIPVIMMSS 115 (603)
Q Consensus 102 ~~~~~~IPVImlSa 115 (603)
... ..++++.+.
T Consensus 219 ~g~--~~~~~~~~~ 230 (345)
T cd06338 219 LGY--NPKALYMTV 230 (345)
T ss_pred cCC--CCCEEEEec
Confidence 553 456665544
No 220
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.59 E-value=1.3e+02 Score=33.94 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=57.0
Q ss_pred cCCCEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC--CCceEEEEeCCCCCCC--HHHHHHHHHh
Q 007462 29 RMALRVLLVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRP--RNIDLILTEVDLPSIS--GFALLTLVME 101 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~---r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~--~~pDLVLlDl~MPgmD--GleLLr~Lr~ 101 (603)
....+|++|+-|+.. ...|+.+-...|+.+..+.+..+..+.+.... ..+|+||+|. +|.+ -.+.+++|..
T Consensus 267 ~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT--aGRs~kd~~lm~EL~~ 344 (436)
T PRK11889 267 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIE 344 (436)
T ss_pred HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC--ccccCcCHHHHHHHHH
Confidence 345689999998753 34445555567888777766665544443211 1389999996 3321 1333444332
Q ss_pred c--ccCCCCeEEEEecCCCH---HHHHHHH-HcCCcEEEeC
Q 007462 102 H--EICKNIPVIMMSSQDSV---STVYKCM-MRGAADYLVK 136 (603)
Q Consensus 102 ~--~~~~~IPVImlSa~~d~---~~~~~al-~~GA~DyL~K 136 (603)
. ...++-.++++++.... ....+.+ ..|.+.+|.-
T Consensus 345 ~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~T 385 (436)
T PRK11889 345 TMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 385 (436)
T ss_pred HHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEE
Confidence 1 12244445666654322 2333333 3577777643
No 221
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=55.50 E-value=1.6e+02 Score=30.89 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=34.4
Q ss_pred hcCCCEEEEEecCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHhcCCCCceEEEEeC
Q 007462 28 QRMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 28 ~~m~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~---dg~----eALe~L~~~~~~pDLVLlDl 85 (603)
.+...+|+||+-|.. ..+.+..+.+..|..+.... +.. ++++.+... .+|+||+|.
T Consensus 97 ~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~--~~D~ViIDT 162 (272)
T TIGR00064 97 KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR--NIDVVLIDT 162 (272)
T ss_pred HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 344579999998863 23455666677776665432 222 333333333 399999996
No 222
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=55.41 E-value=1e+02 Score=33.06 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=53.1
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHH
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~e 142 (603)
+..+..+++.. .|+.++ ...|..-|+-+++.+. ..+|||.. ... ...+.+..|..++|+.|.+.++
T Consensus 290 ~~~~~~~~l~~----adv~v~-~s~~e~~~~~llEAmA-----~G~PVIas-~~~---g~~e~i~~~~~G~lv~~~d~~~ 355 (396)
T cd03818 290 PYDQYLALLQV----SDVHVY-LTYPFVLSWSLLEAMA-----CGCLVVGS-DTA---PVREVITDGENGLLVDFFDPDA 355 (396)
T ss_pred CHHHHHHHHHh----CcEEEE-cCcccccchHHHHHHH-----CCCCEEEc-CCC---CchhhcccCCceEEcCCCCHHH
Confidence 45667777754 466665 2346656677888774 35788853 322 2334556788999999999999
Q ss_pred HHHHHHHHHHh
Q 007462 143 LRNLWQHVWRR 153 (603)
Q Consensus 143 L~~~L~~v~rr 153 (603)
|...|..++..
T Consensus 356 la~~i~~ll~~ 366 (396)
T cd03818 356 LAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHhC
Confidence 99999888643
No 223
>PRK13566 anthranilate synthase; Provisional
Probab=55.02 E-value=40 Score=40.30 Aligned_cols=79 Identities=28% Similarity=0.379 Sum_probs=51.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEe--CCCCC-CCHHHHHHHHHhcccCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE--VDLPS-ISGFALLTLVMEHEICK 106 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlD--l~MPg-mDGleLLr~Lr~~~~~~ 106 (603)
..++|||||........|..+|++.|++|..+..... .+.+... .||.||+= -..|. ..-.++++.+.+ .
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~~----~ 597 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAALA----R 597 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHHH----C
Confidence 3579999999999999999999999999887654321 2233222 38987762 11121 123455555533 3
Q ss_pred CCeEEEEec
Q 007462 107 NIPVIMMSS 115 (603)
Q Consensus 107 ~IPVImlSa 115 (603)
++||+-+.-
T Consensus 598 ~iPILGICl 606 (720)
T PRK13566 598 NLPIFGVCL 606 (720)
T ss_pred CCcEEEEeh
Confidence 689987763
No 224
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=54.87 E-value=1.3e+02 Score=26.61 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEE
Q 007462 40 DDSTRQIVTALLRKSSYRVTA 60 (603)
Q Consensus 40 D~~~r~lL~~lL~~~Gy~V~~ 60 (603)
+......+...|...||.+..
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLVA 31 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEEE
Confidence 333333444455556776654
No 225
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=54.49 E-value=1.4e+02 Score=32.69 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=70.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHhcCCCCceEEEEeCCCC---CCC--HHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLP---SIS--GFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A--~dg~eALe~L~~~~~~pDLVLlDl~MP---gmD--GleLLr~Lr~ 101 (603)
.++++||.+-+. +..++.++...|. .|... -+..+..+++.. .|++++=.... +++ |+-+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 467788887654 4567777776664 23332 345666777764 57777633211 123 456777763
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
..+|||.. .... +.+.+..|..++++.|-+.++|...|..++.
T Consensus 327 ----~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 ----VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ----CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 35788853 3322 3456678899999999999999999998865
No 226
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=54.30 E-value=90 Score=30.73 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=47.1
Q ss_pred HHHHhCCCEEEE-E--CCHHHHHHHHhcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcccCCCC-eEEEEecCC
Q 007462 49 ALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEICKNI-PVIMMSSQD 117 (603)
Q Consensus 49 ~lL~~~Gy~V~~-A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-------leLLr~Lr~~~~~~~I-PVImlSa~~ 117 (603)
..++..|+.+.. + .+..+.++.+.. .+|.|+++-..|+..| ++.+++++.......+ ++|++.+--
T Consensus 103 ~~~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T PRK05581 103 QLIKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI 179 (220)
T ss_pred HHHHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 334445665333 2 244555554432 2687777665565543 3445555432111122 456566656
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 007462 118 SVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 118 d~~~~~~al~~GA~DyL~K 136 (603)
..+.+.++.+.|++.+++-
T Consensus 180 ~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 180 NADNIKECAEAGADVFVAG 198 (220)
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 6688888999999987654
No 227
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=54.21 E-value=2.3e+02 Score=29.03 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCCEEEEEecCHH---HHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 30 MALRVLLVEADDS---TRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 30 m~lrVLLVDDD~~---~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
...+++||.+.+. ....+...+...+. .|.......+..+++.. .|++|+=..-+..-|+-+++.+.
T Consensus 215 ~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a---- 286 (355)
T cd03819 215 PDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA---- 286 (355)
T ss_pred CCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh----
Confidence 3467888876543 33444455555543 34444444555666653 57777643234556778888774
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
..+|||+.. ... ..+.+..|..+++..|-+.++|...|..++
T Consensus 287 -~G~PvI~~~-~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 287 -MGRPVIASD-HGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred -cCCCEEEcC-CCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 367887543 222 234566777899999999999999886543
No 228
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=53.09 E-value=40 Score=33.94 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=46.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEe--CCCCCCCHH--HHHHHHHhcccCCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE--VDLPSISGF--ALLTLVMEHEICKN 107 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlD--l~MPgmDGl--eLLr~Lr~~~~~~~ 107 (603)
++|||||..+.....+...|+..|+.+..+......+..+......+|.||+- -..|..++. .+++.+.. .+
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~----~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAA----AG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHh----CC
Confidence 58999999988888899999999998766543221111111100137877762 112332332 34554432 36
Q ss_pred CeEEEEec
Q 007462 108 IPVIMMSS 115 (603)
Q Consensus 108 IPVImlSa 115 (603)
+||+-+.-
T Consensus 77 ~PiLGIC~ 84 (214)
T PRK07765 77 TPLLGVCL 84 (214)
T ss_pred CCEEEEcc
Confidence 89887663
No 229
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=53.01 E-value=63 Score=36.07 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+.+.++++. ..|+|++|..-+. ..-+++++.|+.. +++++|| +......+.+..++++||+.+.+
T Consensus 156 ~~v~~lv~a---GvDvI~iD~a~g~~~~~~~~v~~ik~~--~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 156 ERVEELVKA---HVDILVIDSAHGHSTRIIELVKKIKTK--YPNLDLI-AGNIVTKEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHHhc---CCCEEEEECCCCCChhHHHHHHHHHhh--CCCCcEE-EEecCCHHHHHHHHHcCCCEEEE
Confidence 344455543 3899999998874 5567888888763 3666644 55566788899999999988764
No 230
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=52.86 E-value=1.2e+02 Score=34.50 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=47.2
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCC-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgm-DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+..+-++.|-... .|+|++|...+.. .-++++++|+.. ++++|||+ -.-.+.+.+..++++||+.+-
T Consensus 225 ~~~~ra~~Lv~aG--Vd~i~~D~a~g~~~~~~~~i~~i~~~--~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDAG--VDVLVIDTAHGHQVKMISAIKAVRAL--DLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred cHHHHHHHHHHhC--CCEEEEeCCCCCcHHHHHHHHHHHHH--CCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 4444444444433 8999999988543 346788888753 46788886 336688899999999997764
No 231
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=52.70 E-value=1e+02 Score=35.36 Aligned_cols=96 Identities=10% Similarity=0.071 Sum_probs=55.2
Q ss_pred hcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 28 QRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 28 ~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
.+....|++||.|+...+.++ +.|+.++..+ +-.+.++.+.-. +.|.|++-..-.. +-..++..+++. .+
T Consensus 437 ~~~g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i~--~a~~viv~~~~~~-~~~~iv~~~~~~--~~ 507 (558)
T PRK10669 437 LAAGIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHLD--CARWLLLTIPNGY-EAGEIVASAREK--RP 507 (558)
T ss_pred HHCCCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCcc--ccCEEEEEcCChH-HHHHHHHHHHHH--CC
Confidence 334567888888877554443 3577766643 345556555432 3787776543222 122344445543 36
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+++||.... +.+......++|++..+
T Consensus 508 ~~~iiar~~--~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 508 DIEIIARAH--YDDEVAYITERGANQVV 533 (558)
T ss_pred CCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 778887664 34555556778988666
No 232
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=52.45 E-value=1.3e+02 Score=34.25 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.++.+.|.+.. +|+|++|..-.. ..-+++++.|+.. .+++|||+ -.-.+.+.+..++++||+.+.+
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~--~p~~~vi~-g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAK--YPDVQIIA-GNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhh--CCCCCEEE-eccCCHHHHHHHHHcCCCEEEE
Confidence 44554444433 899999975433 3456778888753 35788876 6667889999999999987753
No 233
>PRK10060 RNase II stability modulator; Provisional
Probab=52.40 E-value=1.2e+02 Score=35.61 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=71.6
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCC----C-CCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 007462 45 QIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL----P-SISGFALLTLVMEHEICKNIPVIMMSSQD 117 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~M----P-gmDGleLLr~Lr~~~~~~~IPVImlSa~~ 117 (603)
..+-..|+..|+.+.. +.+|-..+..|...+ +|.|=+|-.+ . +.....+++.|-.....-++.|| ..+..
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCC
Confidence 3444566788998766 678888899998765 9999999522 2 23456666666433222345554 46778
Q ss_pred CHHHHHHHHHcCCc---EE-EeCCCCHHHHHHHHHH
Q 007462 118 SVSTVYKCMMRGAA---DY-LVKPVRRNELRNLWQH 149 (603)
Q Consensus 118 d~~~~~~al~~GA~---Dy-L~KP~~~~eL~~~L~~ 149 (603)
+.+....+..+|++ +| +.||+...++...+..
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 88888888899985 43 6799999999877654
No 234
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=52.13 E-value=80 Score=32.30 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPgm-DG--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+.++.+.... --.+|++|+..-++ .| +++++++.+. .++|||+--+..+.+.+.+++++|++..++-
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 44555554432 13699999977663 33 6788888653 4789999988999999999999999999863
No 235
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=52.08 E-value=1.7e+02 Score=30.53 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=65.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSS--YRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~G--y~V~~A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
+++||.||.--..........|...+ +.++.+ .+.+.|-+..++.. +..+..| ++.+-+.. .
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~-~ 67 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTD-----------LEELLADP-D 67 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCC-C
Confidence 45799999977666555555555543 466665 46666666555432 2222322 23332221 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHH
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v~r 152 (603)
.++-+|........+.+.+|+++|..=|+-||+. .+|...+++.+-+
T Consensus 68 iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 68 IDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred CCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 2344444444568889999999999999999984 6677766655433
No 236
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=52.01 E-value=1.4e+02 Score=31.48 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=67.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEE---CCHHHHH-HHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAV---PDGLKAW-EVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A---~dg~eAL-e~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
.++++||.+-+. +..+..+.+..+. .|... .+..+.+ +.+.. .|++|+=-.. ..=|+-+++.+.
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~----~d~~v~~s~~-Egf~~~~lEAma---- 279 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN----VSALLLTSKF-EGFPMTLLEAMS---- 279 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc----CcEEEECCcc-cCcChHHHHHHH----
Confidence 467888877654 4556666665554 34443 2333333 33332 4777653222 223778888874
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
..+|||..-..... .+.+..|..++|+.|-+.++|.+.|..++...
T Consensus 280 -~G~Pvv~s~~~~g~---~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 280 -YGIPCISSDCMSGP---RDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred -cCCCEEEeCCCCCh---HHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 35788753213332 34566788999999999999999999987654
No 237
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=51.61 E-value=89 Score=31.01 Aligned_cols=89 Identities=24% Similarity=0.293 Sum_probs=57.1
Q ss_pred CccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEe-CCCC-CCCHH---
Q 007462 19 GIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE-VDLP-SISGF--- 93 (603)
Q Consensus 19 ~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlD-l~MP-gmDGl--- 93 (603)
|-..|+.+..+-..+|+++|-|..+-.....++.-.+. + -....|.+.+ +||+|+= -+.| .-||+
T Consensus 66 Gq~~~~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~-------P-~~~~~i~~~r--~DL~lLl~p~t~wvaDG~R~~ 135 (187)
T COG3172 66 GQAAYEDAAVRYANKVAFIDTDFLTTQAFCKKYEGREH-------P-FLQALIAEYR--FDLTLLLEPNTPWVADGLRSL 135 (187)
T ss_pred hhHHHHHHHHhCCCceEEEeccHHHHHHHHHHHcccCC-------c-hHHHHHhhcc--cceEEEcCCCCceeCCCcccc
Confidence 55789999999888999999999999998888864221 1 2234555554 8988862 1222 23343
Q ss_pred ----------HHHHH-HHhcccCCCCeEEEEecCCCHHH
Q 007462 94 ----------ALLTL-VMEHEICKNIPVIMMSSQDSVST 121 (603)
Q Consensus 94 ----------eLLr~-Lr~~~~~~~IPVImlSa~~d~~~ 121 (603)
.+|.+ |.+ .++|+|++.+.+-.+.
T Consensus 136 ~~~~~R~~F~~~l~~~L~~----~~~~~v~i~~~~y~eR 170 (187)
T COG3172 136 GSSVQRQEFQNLLEQMLEE----NNIPFVVIEGEDYLER 170 (187)
T ss_pred ccHhHHHHHHHHHHHHHHH----hCCcEEEEcCCCHHHH
Confidence 22322 332 3689999988654443
No 238
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.23 E-value=1.3e+02 Score=30.81 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=35.6
Q ss_pred eCCCCCCCHHHHHHHHHhc--ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007462 84 EVDLPSISGFALLTLVMEH--EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 84 Dl~MPgmDGleLLr~Lr~~--~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
++.|-.-++++.++.|+.. ..+++ -+|=.-..-+.+.+..++++||. ||+-|.-..+|.+..+
T Consensus 45 EiT~~tp~a~~~i~~l~~~~~~~~p~-~~vGaGTVl~~e~a~~a~~aGA~-FiVsP~~~~~v~~~~~ 109 (222)
T PRK07114 45 EFTNRGDFAHEVFAELVKYAAKELPG-MILGVGSIVDAATAALYIQLGAN-FIVTPLFNPDIAKVCN 109 (222)
T ss_pred EEeCCCCcHHHHHHHHHHHHHhhCCC-eEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 3333334456666666422 11122 12333344588889999999995 7777776666654433
No 239
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=51.23 E-value=2.7e+02 Score=28.74 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=68.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHhcCCCCceEEEEeCCC-C----CCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAV--PDGLKAWEVLKGRPRNIDLILTEVDL-P----SISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A--~dg~eALe~L~~~~~~pDLVLlDl~M-P----gmDGleLLr~Lr~ 101 (603)
..+++||.+.+.. ..+..+....|+ .|... -+.++..+++.. .|++++=... + ..-|+.+++.+.
T Consensus 219 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 4688888876543 456666666543 34433 244666677754 5777653221 1 122677888774
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
..+|||.-. ... ..+.+..|..+++..|-+.++|...|.+++.
T Consensus 293 ----~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 ----SGVPVVATR-HGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred ----cCCCEEEeC-CCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 367888533 222 2344556778899999999999999988764
No 240
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=50.83 E-value=2.3e+02 Score=30.49 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCEEEEEec----CHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCC------------CC
Q 007462 31 ALRVLLVEA----DDSTRQIVTALLRKSS-YRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS------------IS 91 (603)
Q Consensus 31 ~lrVLLVDD----D~~~r~lL~~lL~~~G-y~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPg------------mD 91 (603)
...+++|+- .....+.++.+=+... ..|.. +.+.+.|..+++.. .|.|++.+ -|+ ..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aG---aD~I~vg~-g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAG---ADGVKVGI-GPGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcC---CCEEEECC-CCCcCcccceeCCCCCC
Confidence 467777763 2233333333333221 34443 56788887777642 78887632 111 11
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
-+.++..+.+.....++|||.--+..+...+.+++.+||+..++
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 23344444332211268998766778899999999999998875
No 241
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=50.60 E-value=2.1e+02 Score=28.81 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=52.6
Q ss_pred CHHHHHHHHhcCCCCce-EEEEeCCCC---CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC--
Q 007462 63 DGLKAWEVLKGRPRNID-LILTEVDLP---SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK-- 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MP---gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K-- 136 (603)
+..+..+.+.... ++ |+++|+..- ..-.+++++++.+. .++|||+..+-.+.+.+.+++..||+.+++-
T Consensus 150 ~~~~~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 150 TPVEAAKRFEELG--AGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHH
Confidence 4455555555433 55 556666322 12347888888764 3699999998888999999999999998653
Q ss_pred ----CCCHHHHHH
Q 007462 137 ----PVRRNELRN 145 (603)
Q Consensus 137 ----P~~~~eL~~ 145 (603)
|+...+++.
T Consensus 225 ~~~~~~~~~~~~~ 237 (241)
T PRK13585 225 LYKGKFTLEEAIE 237 (241)
T ss_pred HhcCCcCHHHHHH
Confidence 565555543
No 242
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=50.50 E-value=1.6e+02 Score=30.83 Aligned_cols=99 Identities=19% Similarity=0.147 Sum_probs=61.1
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEA--DDSTRQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDD--D~~~r~lL~~lL~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl---~MPgmDGleLLr~Lr~~~~~~ 106 (603)
-|||+-. ++.....|..+-..+|.++ +.+.+..|+-..+... .+||=++- .....| ++....|... ...
T Consensus 134 aVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~---a~iiGINnRdL~tf~vd-~~~~~~l~~~-ip~ 208 (254)
T PF00218_consen 134 AVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAG---ADIIGINNRDLKTFEVD-LNRTEELAPL-IPK 208 (254)
T ss_dssp EEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEESBCTTTCCBH-THHHHHHHCH-SHT
T ss_pred EeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcC---CCEEEEeCccccCcccC-hHHHHHHHhh-Ccc
Confidence 4555544 2233345555556789985 5699999988888643 67766543 222333 3344444322 124
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++.+|.-|+-.+.+.+.+....|++.+|+.
T Consensus 209 ~~~~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 209 DVIVISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp TSEEEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred ceeEEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 577778888889999999999999999975
No 243
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=50.22 E-value=2.1e+02 Score=30.40 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=68.7
Q ss_pred CEEEEEec---CH-HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 32 LRVLLVEA---DD-STRQIVTALLRKSSY--RVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 32 lrVLLVDD---D~-~~r~lL~~lL~~~Gy--~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
++++||.+ +. .....+..+.+..+. .|.... +.++..+++.. .|++++-.. ...-|+-+++.+.
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--- 324 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--- 324 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH---
Confidence 56777764 11 344556666666554 244432 45666677753 577776533 3344677888774
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
..+|||..... . ..+.+..|..++++.|-+.++|...|.+++.
T Consensus 325 --~G~Pvi~~~~~-~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 325 --CGTPVVAARVG-G---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred --cCCCEEEecCC-C---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 36798864432 2 2234567888999999999999999988864
No 244
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=50.19 E-value=66 Score=31.23 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=46.6
Q ss_pred HHhCCCEEEE-EC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcc--cCCCCeEEEEecCCC
Q 007462 51 LRKSSYRVTA-VP--DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHE--ICKNIPVIMMSSQDS 118 (603)
Q Consensus 51 L~~~Gy~V~~-A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-------leLLr~Lr~~~--~~~~IPVImlSa~~d 118 (603)
++..|..+.. +. +..+.++.+... +|.|+++-..|+..| ++.++++++.. ..+++||++.-+-.
T Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~~~~~---~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~- 176 (211)
T cd00429 101 IKELGMKAGVALNPGTPVEVLEPYLDE---VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN- 176 (211)
T ss_pred HHHCCCeEEEEecCCCCHHHHHHHHhh---CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-
Confidence 3444554333 21 234444444322 688887765566443 44555554331 01247876655544
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 007462 119 VSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 119 ~~~~~~al~~GA~DyL~K 136 (603)
.+.+.++...||+.+++-
T Consensus 177 ~env~~~~~~gad~iivg 194 (211)
T cd00429 177 LETIPLLAEAGADVLVAG 194 (211)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 588889999999998764
No 245
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=50.00 E-value=1.7e+02 Score=29.89 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCCce-EEEEeCCC----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc-CCcEEEeC--
Q 007462 65 LKAWEVLKGRPRNID-LILTEVDL----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR-GAADYLVK-- 136 (603)
Q Consensus 65 ~eALe~L~~~~~~pD-LVLlDl~M----PgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~-GA~DyL~K-- 136 (603)
.+..+.+.... ++ |+++|+.- .+. -+++++++.+. ..+|||.--+..+.+.+.++++. |++..++-
T Consensus 156 ~~~~~~~~~~g--~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 156 VEWAKEVEELG--AGEILLTSMDRDGTKNGY-DLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHHHHHHHcC--CCEEEEcCCcCCCCCCCc-CHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 34445554433 55 66766542 222 26778888754 36899999889999999999975 99988763
Q ss_pred ----CCCHHHHHHHHH
Q 007462 137 ----PVRRNELRNLWQ 148 (603)
Q Consensus 137 ----P~~~~eL~~~L~ 148 (603)
-++..+++..+.
T Consensus 230 l~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 230 FHFGEITIGELKAYLA 245 (253)
T ss_pred HHcCCCCHHHHHHHHH
Confidence 455566654443
No 246
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.98 E-value=97 Score=31.32 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 007462 87 LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (603)
Q Consensus 87 MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L 147 (603)
|-.-+.++++++|++. ++++ +|-.-..-+.+.+.++.++||. ||+-|....++....
T Consensus 41 ~~t~~a~~~i~~l~~~--~~~~-~vGAGTVl~~~~a~~a~~aGA~-FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 41 LRTPVALDAIRLLRKE--VPDA-LIGAGTVLNPEQLRQAVDAGAQ-FIVSPGLTPELAKHA 97 (204)
T ss_pred CCCccHHHHHHHHHHH--CCCC-EEEEEeCCCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 3344577788888754 2442 2333345688889999999995 677777666655443
No 247
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=49.90 E-value=2.7e+02 Score=27.54 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=65.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY----RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy----~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
.++++|+.+. .....+..++...+. .+...-+..+..+++.. .|++|+-... +.-|.-+++.+. .
T Consensus 230 ~~~l~i~G~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~-----~ 298 (374)
T cd03801 230 DVRLVIVGDG-PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA-----A 298 (374)
T ss_pred CeEEEEEeCc-HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchh-ccccchHHHHHH-----c
Confidence 3677777744 344455555433332 23333455777777764 5787765433 344666777764 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.+|||+... .. ..+.+..+-.+++..+.+.++|.+.|..++.
T Consensus 299 g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 299 GLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred CCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 578875443 22 2233455788899999999999999988754
No 248
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=49.67 E-value=1.5e+02 Score=30.53 Aligned_cols=82 Identities=15% Similarity=0.030 Sum_probs=52.1
Q ss_pred EEEEE-ecCHHH---HHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 33 RVLLV-EADDST---RQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 33 rVLLV-DDD~~~---r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
+|.|| +|++.- ...++..+++.|.+|+.. .|....+..++... ||+||+-.. ..++..+++++++
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~~~~--~~~~~~~~~~~~~ 214 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGG--PDALVVIGY--PETGSGILRSAYE 214 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEecc--cchHHHHHHHHHH
Confidence 44443 444432 344566677888887642 36677788787654 999987543 4488889999887
Q ss_pred cccCCCCeEEEEecCCCHH
Q 007462 102 HEICKNIPVIMMSSQDSVS 120 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~ 120 (603)
... ..++|..++..+..
T Consensus 215 ~G~--~~~~~~~~~~~~~~ 231 (312)
T cd06346 215 QGL--FDKFLLTDGMKSDS 231 (312)
T ss_pred cCC--CCceEeeccccChH
Confidence 553 55666655544433
No 249
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=49.59 E-value=3.2e+02 Score=29.07 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=55.7
Q ss_pred CCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLV-DDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
.+++++| .++...+..|+.+.+..+-.|....-..+..+++.. -|++|++ ++ |+.+++.+. ..+|
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~g--g~t~~EA~a-----~g~P 295 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---PG--GITLSEAAA-----LGVP 295 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---CC--chHHHHHHH-----hCCC
Confidence 3566555 445556666766665544233333222333345542 5777763 22 666667663 3578
Q ss_pred EEEEecCC--CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 110 VIMMSSQD--SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 110 VImlSa~~--d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
||+..... ..+.+......|+ .+.+-+.++|...|..++.
T Consensus 296 vI~~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 296 VILYKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred EEECCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 87654222 1222222334554 3345678888888877753
No 250
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=49.39 E-value=2.1e+02 Score=30.21 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCC-----CCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 007462 45 QIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL-----PSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~M-----PgmDGleLLr~Lr~~~~~~~IPVImlSa~~ 117 (603)
..++.+-...+.-|+ .+.+.+.|..+.+. ..|.|.+.-.- .+...++++.++++.- ..++|||.-.+..
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~~~ipvia~GGI~ 237 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAV-GGRIEVLLDGGIR 237 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-cCCCeEEEeCCCC
Confidence 344444444443333 24567777666553 27877774321 1334677787776532 2369999999999
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 007462 118 SVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 118 d~~~~~~al~~GA~DyL~K 136 (603)
+...+.+++.+||+...+-
T Consensus 238 ~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 238 RGTDVLKALALGADAVLIG 256 (299)
T ss_pred CHHHHHHHHHcCCCEEEEc
Confidence 9999999999999998754
No 251
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=49.33 E-value=2.1e+02 Score=30.57 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=40.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-----CCHHHHHHHHhcCCCCceEEEE
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV-----PDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A-----~dg~eALe~L~~~~~~pDLVLl 83 (603)
++-+||=+|-|+.-....-.+-+++|..+... .-+....++|+... ||||++
T Consensus 104 ~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 160 (287)
T PF05582_consen 104 RPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYR--PDILVI 160 (287)
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcC--CCEEEE
Confidence 45699999999999988888888888866542 35555677888765 999887
No 252
>PRK07695 transcriptional regulator TenI; Provisional
Probab=49.30 E-value=1.1e+02 Score=30.16 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=48.8
Q ss_pred EECCHHHHHHHHhcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcE
Q 007462 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (603)
Q Consensus 60 ~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~D 132 (603)
.+.+.+++.+..+. ..|.|++.-..|. .-|++.++.+... .++|||.+-+- +.+.+..++..|++.
T Consensus 101 s~~s~e~a~~a~~~---Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~~Ga~g 173 (201)
T PRK07695 101 SVHSLEEAIQAEKN---GADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLAAGVSG 173 (201)
T ss_pred eCCCHHHHHHHHHc---CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHcCCCE
Confidence 35677777665543 3799987653332 2367888888653 36899988777 788899999999988
Q ss_pred EE
Q 007462 133 YL 134 (603)
Q Consensus 133 yL 134 (603)
+.
T Consensus 174 va 175 (201)
T PRK07695 174 IA 175 (201)
T ss_pred EE
Confidence 73
No 253
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=49.30 E-value=1.9e+02 Score=30.73 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=42.2
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHhcCCCCceEEEE
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTA-----VPDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-----A~dg~eALe~L~~~~~~pDLVLl 83 (603)
.|+-+||=+|-|+......-.+-+++|..+.. -.-++....+|+... ||||++
T Consensus 102 ~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 159 (283)
T TIGR02855 102 GMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVI 159 (283)
T ss_pred CCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEE
Confidence 45679999999999988888888888876554 246677788888765 998886
No 254
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=49.15 E-value=3.2e+02 Score=28.25 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=38.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC----CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ----DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~----~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~ 151 (603)
.|++|+.- + +..+++.+. ..+|||++... .......+.+..+-.++++.+- +.++|.+.|..++
T Consensus 253 ad~~v~~s---g--~~t~~Eam~-----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA-----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH-----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 57777632 2 455566653 36798876422 1122222333334467888775 8999998888776
Q ss_pred H
Q 007462 152 R 152 (603)
Q Consensus 152 r 152 (603)
.
T Consensus 323 ~ 323 (350)
T cd03785 323 S 323 (350)
T ss_pred c
Confidence 3
No 255
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.15 E-value=1.8e+02 Score=30.98 Aligned_cols=103 Identities=15% Similarity=0.212 Sum_probs=59.8
Q ss_pred CEEEEEe--cCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------------HhcCCCCceEEEEeCCCCCCCHH
Q 007462 32 LRVLLVE--ADDSTR---QIVTALLRKSSYRVTAVPDGLKAWEV-------------LKGRPRNIDLILTEVDLPSISGF 93 (603)
Q Consensus 32 lrVLLVD--DD~~~r---~lL~~lL~~~Gy~V~~A~dg~eALe~-------------L~~~~~~pDLVLlDl~MPgmDGl 93 (603)
|+|.||- +.+... ..+..+|+..|+++.........+.. .......+|+||+ -|.||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG- 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDG- 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcH-
Confidence 3566662 233333 44555666778887764432222110 0111113687776 37788
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 94 eLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+|+..+... ..++||+-+- .|-.+||. .+.++++...|.+++...
T Consensus 76 T~L~aa~~~~-~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 76 TFLRTATYVG-NSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred HHHHHHHHhc-CCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 3555555332 2478988654 36667775 588899999999887654
No 256
>PRK05637 anthranilate synthase component II; Provisional
Probab=49.11 E-value=31 Score=34.64 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=46.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE--eCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT--EVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl--Dl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
-+|||||....+-..|..+|+..|+.+..+..... ++.+... .||.||+ .-.-|. |..+..+.|+.. ..++|
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIlsgGPg~~~-d~~~~~~li~~~--~~~~P 75 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICLSPGPGHPR-DAGNMMALIDRT--LGQIP 75 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEEeCCCCCHH-HhhHHHHHHHHH--hCCCC
Confidence 48999999999999999999999988777654222 2333222 3787777 222221 111222333221 13678
Q ss_pred EEEEe
Q 007462 110 VIMMS 114 (603)
Q Consensus 110 VImlS 114 (603)
|+-+.
T Consensus 76 iLGIC 80 (208)
T PRK05637 76 LLGIC 80 (208)
T ss_pred EEEEc
Confidence 88665
No 257
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=49.07 E-value=3.2e+02 Score=28.22 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCC-EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC---CCHH
Q 007462 45 QIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ---DSVS 120 (603)
Q Consensus 45 ~lL~~lL~~~Gy-~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~---~d~~ 120 (603)
..|++.+...+. .++... ..+..+++.. .|++|+. .+ +..+++.+. ..+|+|++... ....
T Consensus 222 ~~l~~~~~~~~l~~~v~~~-~~~~~~~l~~----ad~~v~~---~g--~~~l~Ea~~-----~g~Pvv~~~~~~~~~~~~ 286 (348)
T TIGR01133 222 EKVKNVYQELGIEAIVTFI-DENMAAAYAA----ADLVISR---AG--ASTVAELAA-----AGVPAILIPYPYAADDQY 286 (348)
T ss_pred HHHHHHHhhCCceEEecCc-ccCHHHHHHh----CCEEEEC---CC--hhHHHHHHH-----cCCCEEEeeCCCCccchh
Confidence 456666665554 232222 1144455542 5888863 12 455666663 36799876321 1222
Q ss_pred HHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHH
Q 007462 121 TVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (603)
Q Consensus 121 ~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v~r 152 (603)
...+.+..+-.++++.|-+ .++|.+.+.+++.
T Consensus 287 ~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 287 YNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 2234455677788887654 9999999988764
No 258
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=48.82 E-value=2.2e+02 Score=31.33 Aligned_cols=81 Identities=7% Similarity=0.119 Sum_probs=51.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
-+|..+|-++.....++.-++..+.. +.. ..|....+... ...||+|++|- ++.. ..++..+-.. ..+-.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~~~fDvIdlDP--fGs~-~~fld~al~~--~~~~g 141 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---NRKFHVIDIDP--FGTP-APFVDSAIQA--SAERG 141 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---CCCCCEEEeCC--CCCc-HHHHHHHHHh--cccCC
Confidence 58999999999999999999877653 322 33444444332 22499999995 4432 3455544321 13446
Q ss_pred EEEEecCCCHH
Q 007462 110 VIMMSSQDSVS 120 (603)
Q Consensus 110 VImlSa~~d~~ 120 (603)
+|.+|+.+...
T Consensus 142 lL~vTaTD~~~ 152 (374)
T TIGR00308 142 LLLVTATDTSA 152 (374)
T ss_pred EEEEEecccHH
Confidence 88888766433
No 259
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=48.80 E-value=57 Score=31.81 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=54.9
Q ss_pred CEEEEEecC-HHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHhcCCCCceEEEEeCCCCCCC-------HHHHHHHHH
Q 007462 32 LRVLLVEAD-DSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-------GFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD-~~~r~lL~~lL~~~Gy~V~~---A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD-------GleLLr~Lr 100 (603)
...++|.+. ..........++..|..+.. ..+..+.++.+... +|.|+++-.-|+.. +++.+++++
T Consensus 80 adgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~---~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~ 156 (210)
T TIGR01163 80 ADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPD---VDLVLLMSVNPGFGGQKFIPDTLEKIREVR 156 (210)
T ss_pred CCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh---CCEEEEEEEcCCCCcccccHHHHHHHHHHH
Confidence 344444443 22223333555556655333 33556666666432 57777765445443 334555554
Q ss_pred hcc--cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 101 EHE--ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 101 ~~~--~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+.. ..+.+||++.-+- ..+.+.+++..||+.+++-
T Consensus 157 ~~~~~~~~~~~i~v~GGI-~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 157 KMIDENGLSILIEVDGGV-NDDNARELAEAGADILVAG 193 (210)
T ss_pred HHHHhcCCCceEEEECCc-CHHHHHHHHHcCCCEEEEC
Confidence 321 1123576554544 5688889899999988764
No 260
>PLN02335 anthranilate synthase
Probab=48.76 E-value=21 Score=36.16 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=46.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHhcCCCCceEEEEeC--CCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG-LKAWEVLKGRPRNIDLILTEV--DLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg-~eALe~L~~~~~~pDLVLlDl--~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+|||||-....-..|.++|+..|+.+..+... .. ++.+... .||.||+-= .-|.-.| ..++.++.. ...
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~-~~~~~~~--~~d~iVisgGPg~p~d~~-~~~~~~~~~--~~~ 91 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT-VEELKRK--NPRGVLISPGPGTPQDSG-ISLQTVLEL--GPL 91 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCC-HHHHHhc--CCCEEEEcCCCCChhhcc-chHHHHHHh--CCC
Confidence 4589999988888889999999999887765432 22 2323322 377777632 1122122 234444332 246
Q ss_pred CeEEEEe
Q 007462 108 IPVIMMS 114 (603)
Q Consensus 108 IPVImlS 114 (603)
+||+-+.
T Consensus 92 ~PiLGIC 98 (222)
T PLN02335 92 VPLFGVC 98 (222)
T ss_pred CCEEEec
Confidence 8988665
No 261
>PRK07206 hypothetical protein; Provisional
Probab=48.74 E-value=2.2e+02 Score=30.95 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=17.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEE
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA 60 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~ 60 (603)
|+.+||||+-...-. .+...++..||+++.
T Consensus 1 ~~k~~liv~~~~~~~-~~~~a~~~~G~~~v~ 30 (416)
T PRK07206 1 MMKKVVIVDPFSSGK-FLAPAFKKRGIEPIA 30 (416)
T ss_pred CCCeEEEEcCCchHH-HHHHHHHHcCCeEEE
Confidence 456777777764443 344455556776543
No 262
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=48.70 E-value=3.2e+02 Score=28.49 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=41.5
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe------CCCCHHHHHHHHHHHHHh
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV------KPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~------KP~~~~eL~~~L~~v~rr 153 (603)
++++++|++. .++|||...+..+.+.+.+++..||+...+ -|.-..++..-+.+.+.+
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~ 283 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDE 283 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHH
Confidence 5778888754 269999999999999999999999876532 355555555555554443
No 263
>PRK04296 thymidine kinase; Provisional
Probab=48.70 E-value=15 Score=35.93 Aligned_cols=90 Identities=14% Similarity=0.205 Sum_probs=48.2
Q ss_pred ccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCC-C-CCCCHHHH
Q 007462 20 IAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVD-L-PSISGFAL 95 (603)
Q Consensus 20 ~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~-M-PgmDGleL 95 (603)
..++=.-+.....+|+++-..-..+.....++.+.|..+. .+....+.+..+......+|+|++|-. + +...-.++
T Consensus 19 ~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~~~~v~~l 98 (190)
T PRK04296 19 LLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLDKEQVVQL 98 (190)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCCHHHHHHH
Confidence 3344333333457899884321234444455666675443 356677777776542234899999963 2 11113455
Q ss_pred HHHHHhcccCCCCeEEEE
Q 007462 96 LTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 96 Lr~Lr~~~~~~~IPVIml 113 (603)
++.++. .++.||+.
T Consensus 99 ~~~l~~----~g~~vi~t 112 (190)
T PRK04296 99 AEVLDD----LGIPVICY 112 (190)
T ss_pred HHHHHH----cCCeEEEE
Confidence 655543 35566654
No 264
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=48.59 E-value=1.3e+02 Score=31.50 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=48.2
Q ss_pred EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 58 V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+.+.+.++|.+.++. ..|+|.+|-.-|. +--++++.++.. .+++||+++- --..+.+.+....|++.+.+-
T Consensus 187 gVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~--~~~i~i~AsG-GI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 187 VVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSL--APPVLLAAAG-GINIENAAAYAAAGADILVTS 258 (272)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhcc--CCCceEEEEC-CCCHHHHHHHHHcCCcEEEEC
Confidence 3457899999998864 3799999965553 112344444321 2467766554 457888889999999988543
No 265
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=48.46 E-value=56 Score=33.52 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=45.8
Q ss_pred CEEEEEecCH------HHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 32 LRVLLVEADD------STRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 32 lrVLLVDDD~------~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
|+||++-... .....+...|.+.|++|..+. +.......+... .||||.+-......-.+.++..+.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~---- 74 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL---- 74 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH----
Confidence 4788886654 466667777888899876643 333444555543 499999865444444444454442
Q ss_pred CCCCeEEEE
Q 007462 105 CKNIPVIMM 113 (603)
Q Consensus 105 ~~~IPVIml 113 (603)
..+|+|+.
T Consensus 75 -~~~~~v~~ 82 (365)
T cd03825 75 -DRKPVVWT 82 (365)
T ss_pred -cCCCEEEE
Confidence 35677754
No 266
>PLN02591 tryptophan synthase
Probab=48.30 E-value=3.1e+02 Score=28.57 Aligned_cols=109 Identities=11% Similarity=0.102 Sum_probs=68.1
Q ss_pred HHhhhcCC----CEEEEEecCHHHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHhcCCCCceEEEE-e-CCCCC-----
Q 007462 24 ETFLQRMA----LRVLLVEADDSTRQIVTALLRKSSYRVTA-V-P-DGLKAWEVLKGRPRNIDLILT-E-VDLPS----- 89 (603)
Q Consensus 24 e~fl~~m~----lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A-~-dg~eALe~L~~~~~~pDLVLl-D-l~MPg----- 89 (603)
|+|+.+.. --|||+|-.......+...++..|...+. + . +..+=++.+.... .+.|-+ - ..-.|
T Consensus 96 ~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~ 173 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGARASV 173 (250)
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCCCcCC
Confidence 55655432 35677776767777788888888886443 3 2 3333344444333 233321 1 11111
Q ss_pred -CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 007462 90 -ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (603)
Q Consensus 90 -mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP 137 (603)
.+-.++++++++. .++||++=.+-.+.+.+.++...||++.++--
T Consensus 174 ~~~~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 174 SGRVESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred chhHHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 1234557777763 48999987777889999999999999999863
No 267
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=48.26 E-value=4.2e+02 Score=29.37 Aligned_cols=100 Identities=25% Similarity=0.257 Sum_probs=60.0
Q ss_pred HHHHHHhCCCEEEE----ECCHHHHHHHHhcCCCCceEEEEeCCC----CCCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 007462 47 VTALLRKSSYRVTA----VPDGLKAWEVLKGRPRNIDLILTEVDL----PSISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 47 L~~lL~~~Gy~V~~----A~dg~eALe~L~~~~~~pDLVLlDl~M----PgmDGleLLr~Lr~~~~~~~IPVImlSa~~d 118 (603)
+....++.|..+.. +.+..+.+..+.+. ..|.|.+.... ....+++.+++++.. .++||++.-+- .
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~---~~iPI~a~GGI-~ 172 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEE---VSIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhh---CCCcEEEECCC-C
Confidence 44444556766553 23433333333332 27888765321 225678889998754 25898877665 5
Q ss_pred HHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHH
Q 007462 119 VSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVWR 152 (603)
Q Consensus 119 ~~~~~~al~~GA~DyL~-----KP~~~~eL~~~L~~v~r 152 (603)
.+.+..++..||+.+++ +.-++.+....++..+.
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 77888999999997754 34455555555554443
No 268
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=48.23 E-value=2.2e+02 Score=29.83 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCCEEEEEecCH-------HHHHHHHHHHHh-CCC--EEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHH
Q 007462 30 MALRVLLVEADD-------STRQIVTALLRK-SSY--RVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (603)
Q Consensus 30 m~lrVLLVDDD~-------~~r~lL~~lL~~-~Gy--~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr 97 (603)
...+++||.+.+ .....+..+++. .|. .|.. .-...+..+++.. .|++|+-... ..-|+-+++
T Consensus 244 ~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~-E~~g~~~lE 318 (392)
T cd03805 244 KNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSN-EHFGIVPLE 318 (392)
T ss_pred cCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCc-CCCCchHHH
Confidence 367888888643 223556666666 554 3443 3355556677753 5888864332 223566677
Q ss_pred HHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 98 LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 98 ~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.+. ..+|||..-.... .+.+..|..+|+..| +.+++.+.|..++.
T Consensus 319 Ama-----~G~PvI~s~~~~~----~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~ 363 (392)
T cd03805 319 AMY-----AGKPVIACNSGGP----LETVVDGETGFLCEP-TPEEFAEAMLKLAN 363 (392)
T ss_pred HHH-----cCCCEEEECCCCc----HHHhccCCceEEeCC-CHHHHHHHHHHHHh
Confidence 663 3578886433222 234556778898876 99999988887764
No 269
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=48.10 E-value=1.9e+02 Score=29.12 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=43.2
Q ss_pred HHHhcCCCCce-EEEEeCC----CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc-CCcEEEe
Q 007462 69 EVLKGRPRNID-LILTEVD----LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR-GAADYLV 135 (603)
Q Consensus 69 e~L~~~~~~pD-LVLlDl~----MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~-GA~DyL~ 135 (603)
+.+.... +| |++.++. +++. .+++++++.+. ..+|||+.-+..+.+.+.++++. |++..++
T Consensus 156 ~~l~~~G--~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~---~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 156 KEVEELG--AGEILLTSMDRDGTKKGY-DLELIRAVSSA---VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHCC--CCEEEEeccCCCCCCCCC-CHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 4444433 67 5565653 2222 47888888754 37999988888899999999997 8988876
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=48.01 E-value=1.9e+02 Score=32.60 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=56.0
Q ss_pred cCCCEEEEEecCHHHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHhcCCCCceEEEEeCCCCCCC--HHHHH
Q 007462 29 RMALRVLLVEADDSTR---QIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEVDLPSIS--GFALL 96 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r---~lL~~lL~~~Gy~V~~A~---dg----~eALe~L~~~~~~pDLVLlDl~MPgmD--GleLL 96 (603)
+...+|+||+-|+... ..|+.+-+..+..+.... ++ .++++.++.. .+|+||+|.. |.. --+++
T Consensus 126 ~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDTa--Gr~~~d~~lm 201 (429)
T TIGR01425 126 RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDTS--GRHKQEDSLF 201 (429)
T ss_pred HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CCCcchHHHH
Confidence 3456899999886433 333333444565555433 32 2456666543 3899999973 322 22455
Q ss_pred HHHHhcc--cCCCCeEEEEecCC--CHHHHHHHHH--cCCcEEEeCCCC
Q 007462 97 TLVMEHE--ICKNIPVIMMSSQD--SVSTVYKCMM--RGAADYLVKPVR 139 (603)
Q Consensus 97 r~Lr~~~--~~~~IPVImlSa~~--d~~~~~~al~--~GA~DyL~KP~~ 139 (603)
++|.... ..++..++++.+.. +.....+++. .+...+|.-=++
T Consensus 202 ~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 202 EEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred HHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECcc
Confidence 5554321 22444555665533 2233445553 466776544333
No 271
>PLN02823 spermine synthase
Probab=47.87 E-value=88 Score=33.96 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKS-----SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP 88 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~-----Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MP 88 (603)
...+|.+||=|+.+.++.+..+... +-++. ...|+.+-++ .....+||||+|+.-|
T Consensus 126 ~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 126 TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KRDEKFDVIIGDLADP 187 (336)
T ss_pred CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hCCCCccEEEecCCCc
Confidence 3468999999999999999988532 12332 2456665554 3334599999998655
No 272
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.76 E-value=82 Score=33.54 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=58.9
Q ss_pred hcCCC--EEEEEecCHHHHHHHHHHH----HhCCC--E-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 28 QRMAL--RVLLVEADDSTRQIVTALL----RKSSY--R-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 28 ~~m~l--rVLLVDDD~~~r~lL~~lL----~~~Gy--~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
+|+.+ -|||=|.+-...-.+...+ +..++ . .+.+.+.+||.+.+.. .+|+|.+|- |.--+--++++.
T Consensus 161 HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn-~~~e~l~~av~~ 236 (288)
T PRK07428 161 HRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDN-MPVDLMQQAVQL 236 (288)
T ss_pred ccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHH
Confidence 44443 4666665543332233333 33453 2 3447899999999974 389999993 322122223333
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
++.. .+++| |..++--..+.+.+....|++.+-+
T Consensus 237 ~~~~--~~~i~-leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 237 IRQQ--NPRVK-IEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred HHhc--CCCeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3321 24555 5556667888888999999987653
No 273
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=47.76 E-value=1.3e+02 Score=38.07 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=70.8
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCC-CCCH-HHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLP-SISG-FALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MP-gmDG-leLLr~Lr~ 101 (603)
.-+|||. |-+..=..++.-+|+..||+|+... ..++.++.+++.. +|+|-+-..|. .+.. .++++.|++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3578777 7777777888888999999998743 5677778777754 99999877665 3443 567788876
Q ss_pred cccCCCCeEEEEecCCCHHHHHH---HHHcCCcEEEeCCC
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYK---CMMRGAADYLVKPV 138 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~---al~~GA~DyL~KP~ 138 (603)
.. .++||++--+..+...+.. ....||+.|-.-.+
T Consensus 810 ~g--~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 810 RG--ITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred cC--CCceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 54 4688877666555554432 12348877765333
No 274
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.75 E-value=1.4e+02 Score=33.07 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=50.3
Q ss_pred CEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCC-CCCCCH--HHHHHHHHhcccC
Q 007462 32 LRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD-LPSISG--FALLTLVMEHEIC 105 (603)
Q Consensus 32 lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~-MPgmDG--leLLr~Lr~~~~~ 105 (603)
.+|.+|..|.. -.+.|+.+-+..|..+..+.++.+....+.... .+|+||+|.. +...|. .+.+..|.... .
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~-~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGAD-T 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccC-C
Confidence 47888887765 345566666667877777766555444444322 4799999973 333333 24444443211 1
Q ss_pred CCCeEEEEecCCCHHH
Q 007462 106 KNIPVIMMSSQDSVST 121 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~ 121 (603)
+.-.++++++......
T Consensus 246 ~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 246 PVQRLLLLNATSHGDT 261 (374)
T ss_pred CCeEEEEecCccChHH
Confidence 2234777777665444
No 275
>PLN02775 Probable dihydrodipicolinate reductase
Probab=47.62 E-value=2.5e+02 Score=30.06 Aligned_cols=103 Identities=14% Similarity=0.197 Sum_probs=55.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEE------------------------CCHHHHHHHHhcCCCCceEEEEeC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV------------------------PDGLKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A------------------------~dg~eALe~L~~~~~~pDLVLlDl 85 (603)
+.++|+|..---.+-..+...+...+++++.+ .+..++|..+.... ||+|++|+
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~--~~~VvIDF 87 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEY--PNLIVVDY 87 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccC--CCEEEEEC
Confidence 44677777766666555555544455554442 44555554444333 89999999
Q ss_pred CCCCCCHHHHHHHHHhcccCCCCeEEEEe-cCCCHHHHHHHHH-cCCcEEEeCCCCH
Q 007462 86 DLPSISGFALLTLVMEHEICKNIPVIMMS-SQDSVSTVYKCMM-RGAADYLVKPVRR 140 (603)
Q Consensus 86 ~MPgmDGleLLr~Lr~~~~~~~IPVImlS-a~~d~~~~~~al~-~GA~DyL~KP~~~ 140 (603)
..|..- ++.++...++ .+|+|+=| +.... .+.+... .++--++.-.|..
T Consensus 88 T~P~a~-~~~~~~~~~~----g~~~VvGTTG~~~e-~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 88 TLPDAV-NDNAELYCKN----GLPFVMGTTGGDRD-RLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred CChHHH-HHHHHHHHHC----CCCEEEECCCCCHH-HHHHHHhcCCccEEEECcccH
Confidence 999732 2334433332 45666555 44444 3333333 3444444445554
No 276
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=47.10 E-value=92 Score=33.71 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=41.6
Q ss_pred ceEEEEeCCCCCC-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 78 IDLILTEVDLPSI-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 78 pDLVLlDl~MPgm-DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.|+|++|.--... .-++.++.|++.- ..|+|+.-.....+.+..++++||+.+.+-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 6999999865543 3567788887642 345565555789999999999999998754
No 277
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=47.03 E-value=2.9e+02 Score=27.92 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=49.0
Q ss_pred ECCHHHHHHHHhcCCCCceEEEEeC------CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 61 VPDGLKAWEVLKGRPRNIDLILTEV------DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 61 A~dg~eALe~L~~~~~~pDLVLlDl------~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+.+.++++...+.. +|+|=+=+ ......-++|+++|.+. .+|||.=-...+.+.+.+|+++||+..+
T Consensus 99 ist~ee~~~A~~~G---~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~pvIaEGri~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 99 ISTLEEAINAAELG---FDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVPVIAEGRIHTPEQAAKALELGAHAVV 171 (192)
T ss_dssp -SSHHHHHHHHHTT----SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred cCCHHHHHHHHHcC---CCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCcEeecCCCCCHHHHHHHHhcCCeEEE
Confidence 67999999888743 89887643 12233468999999753 6898877778899999999999999988
Q ss_pred eC
Q 007462 135 VK 136 (603)
Q Consensus 135 ~K 136 (603)
+-
T Consensus 172 VG 173 (192)
T PF04131_consen 172 VG 173 (192)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 278
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=46.77 E-value=85 Score=31.56 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=52.5
Q ss_pred cchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHhcCC--CCceEEEEeCCCCCCCHHHH
Q 007462 21 AKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRP--RNIDLILTEVDLPSISGFAL 95 (603)
Q Consensus 21 v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~-A~dg~eALe~L~~~~--~~pDLVLlDl~MPgmDGleL 95 (603)
+.|-+.++. .-+|.-||-++......+..++..|+ .|.. ..++.+.+..+.... ..||+||+|..= -+-...
T Consensus 61 l~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y 137 (205)
T PF01596_consen 61 LWLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEY 137 (205)
T ss_dssp HHHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHH
T ss_pred HHHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc--cchhhH
Confidence 445555553 46999999999999999999999887 3433 578888888765432 259999999843 233444
Q ss_pred HHHH
Q 007462 96 LTLV 99 (603)
Q Consensus 96 Lr~L 99 (603)
++.+
T Consensus 138 ~~~~ 141 (205)
T PF01596_consen 138 FEKA 141 (205)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=46.67 E-value=3.1e+02 Score=30.88 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=53.2
Q ss_pred hhcCCCEEEEEecCHH---HHHHHHHHHHhCCCEEEEEC---CHHH-HHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 007462 27 LQRMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVP---DGLK-AWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~---dg~e-ALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~L 99 (603)
+.+...+|+||+-|.. ..+.|+.+....|..+.... ++.+ +.+.++... ..|+||+|.---...--+++++|
T Consensus 119 L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTAGr~~~d~~lm~El 197 (437)
T PRK00771 119 FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTAGRHALEEDLIEEM 197 (437)
T ss_pred HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECCCcccchHHHHHHH
Confidence 3344579999998864 23445555566777665542 3332 223333221 25999999741111122344333
Q ss_pred Hhc--ccCCCCeEEEEecCCCHHHH--HHHHH--cCCcEEEe
Q 007462 100 MEH--EICKNIPVIMMSSQDSVSTV--YKCMM--RGAADYLV 135 (603)
Q Consensus 100 r~~--~~~~~IPVImlSa~~d~~~~--~~al~--~GA~DyL~ 135 (603)
+.. ...++..++++.+....+.+ .+.+. .++.++|.
T Consensus 198 ~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIl 239 (437)
T PRK00771 198 KEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIII 239 (437)
T ss_pred HHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEEEE
Confidence 321 12245556666654433322 22232 45666554
No 280
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=46.67 E-value=2e+02 Score=28.76 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=54.1
Q ss_pred CCHHHHHHHHhcCCCCceEEEEeCCCCC---------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH---HHHcC
Q 007462 62 PDGLKAWEVLKGRPRNIDLILTEVDLPS---------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK---CMMRG 129 (603)
Q Consensus 62 ~dg~eALe~L~~~~~~pDLVLlDl~MPg---------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~---al~~G 129 (603)
.+-.+.++.+.... +|.|++|+.-.. .+-.+++..++.... ....+++=....+.....+ ++..|
T Consensus 8 ~~~~~~~~~a~~~g--~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~-~~~~~~VRvn~~~~~~~~~Dl~~l~~g 84 (221)
T PF03328_consen 8 ANSPKMLEKAAASG--ADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA-AGSEIIVRVNSLDSPHIERDLEALDAG 84 (221)
T ss_dssp STSHHHHHHHHTTC--SSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT-SSSEEEEE-SSTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhcC--CCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc-ccccceecCCCCCcchhhhhhhhcccC
Confidence 34455666666544 999999998765 455566666654221 2245555555555555556 99999
Q ss_pred CcEEEeCCC-CHHHHHHHHHHH
Q 007462 130 AADYLVKPV-RRNELRNLWQHV 150 (603)
Q Consensus 130 A~DyL~KP~-~~~eL~~~L~~v 150 (603)
++++++-=+ +.++++.+++.+
T Consensus 85 ~~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SSEEEETT--SHHHHHHHHHHH
T ss_pred CCeeeccccCcHHHHHHHHHHH
Confidence 999976555 567777666544
No 281
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=46.46 E-value=90 Score=33.17 Aligned_cols=71 Identities=8% Similarity=0.118 Sum_probs=49.9
Q ss_pred EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 58 V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+.+.+.++|.+.++.. +|+|++| +|+--+--++.+.++.. .++ .+|-.|+--..+.+...-..|++-+.+
T Consensus 193 eVEv~tleqa~ea~~ag---aDiI~LD-n~~~e~l~~av~~~~~~--~~~-~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 193 VVEADTPKEAIAALRAQ---PDVLQLD-KFSPQQATEIAQIAPSL--APH-CTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred EEECCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHhhcc--CCC-eEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 45578999999999753 8999999 44443334444444321 123 467778888999999999999877654
No 282
>PRK10867 signal recognition particle protein; Provisional
Probab=46.37 E-value=2.4e+02 Score=31.81 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=53.4
Q ss_pred CCEEEEEecCHHHHH---HHHHHHHhCCCEEEEEC---CHHH----HHHHHhcCCCCceEEEEeCC--CC-CCCHHHHHH
Q 007462 31 ALRVLLVEADDSTRQ---IVTALLRKSSYRVTAVP---DGLK----AWEVLKGRPRNIDLILTEVD--LP-SISGFALLT 97 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~---lL~~lL~~~Gy~V~~A~---dg~e----ALe~L~~~~~~pDLVLlDl~--MP-gmDGleLLr 97 (603)
..+|+||+-|..... .|+.+....|..+.... ++.+ +++..... .+|+||+|.. ++ +-..++-+.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~--~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKEN--GYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcccCHHHHHHHH
Confidence 679999999864333 34444566677666542 4433 33333433 4899999973 22 122444445
Q ss_pred HHHhcccCCCCeEEEEecCCCHHH--HHHHHH--cCCcEEEe
Q 007462 98 LVMEHEICKNIPVIMMSSQDSVST--VYKCMM--RGAADYLV 135 (603)
Q Consensus 98 ~Lr~~~~~~~IPVImlSa~~d~~~--~~~al~--~GA~DyL~ 135 (603)
.+... ..+.-.++++.+....+. ..+.+. .+..++|.
T Consensus 207 ~i~~~-v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIl 247 (433)
T PRK10867 207 AIKAA-VNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVIL 247 (433)
T ss_pred HHHHh-hCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEE
Confidence 55432 223333555555442222 223333 55666654
No 283
>PRK05670 anthranilate synthase component II; Provisional
Probab=46.29 E-value=27 Score=34.06 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=33.6
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl 83 (603)
|||||-....-..+.++|++.|+++..........+.+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999999999999999999999877654321112222222 2787776
No 284
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=46.24 E-value=1.4e+02 Score=31.79 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=57.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHH----HHHHhcCCCCceEEEE-eCCCCCCC--HHHHHHHHHhc
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKA----WEVLKGRPRNIDLILT-EVDLPSIS--GFALLTLVMEH 102 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~--dg~eA----Le~L~~~~~~pDLVLl-Dl~MPgmD--GleLLr~Lr~~ 102 (603)
..|++++|-.....++..+ . ..-+++... +..+. ++.+.+. -+++++ |..+|... |..+++.+++.
T Consensus 38 aDvI~~edtr~t~~ll~~~-~-i~~~~~~~~~~~~~~~~~~i~~~l~~G---~~ValvSdaGdP~I~dpg~~Lv~~~~~~ 112 (287)
T PRK14994 38 VDLIAAEDTRHTGLLLQHF-A-INARLFALHDHNEQQKAETLLAKLQEG---QNIALVSDAGTPLINDPGYHLVRTCREA 112 (287)
T ss_pred CCEEEEeCCcchHHHHhhc-C-CCCEEEEccCCCHHHHHHHHHHHHHCC---CeEEEEccCCCCceeCCHHHHHHHHHHC
Confidence 4678899887665433322 2 122343332 23333 3444443 477777 99999854 89999999763
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+++|.++-+......+..+.......|+
T Consensus 113 ----gi~v~vIPGiSA~~aA~a~sG~~~~~f~ 140 (287)
T PRK14994 113 ----GIRVVPLPGPCAAITALSAAGLPSDRFC 140 (287)
T ss_pred ----CCCEEEeCCHHHHHHHHHHcCCCCCcce
Confidence 6899998887766665555544434443
No 285
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.19 E-value=1.8e+02 Score=30.94 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=60.4
Q ss_pred CEEEEEe--cCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------HhcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 007462 32 LRVLLVE--ADDSTR---QIVTALLRKSSYRVTAVPDGLKAWEV-------LKGRPRNIDLILTEVDLPSISGFALLTLV 99 (603)
Q Consensus 32 lrVLLVD--DD~~~r---~lL~~lL~~~Gy~V~~A~dg~eALe~-------L~~~~~~pDLVLlDl~MPgmDGleLLr~L 99 (603)
.+|+||- +.+... ..+..+|.+.|+++.........+.. +......+|+||+ -|.|| .+|+..
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDG-T~L~aa 80 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDG-NMLGAA 80 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcH-HHHHHH
Confidence 4688873 333333 44555666778887765433222210 0111123687776 37788 355555
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+... ..++|||-+- .|=.+||. .+.++++...|++++...
T Consensus 81 ~~~~-~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 81 RVLA-RYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred HHhc-CCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 4322 2368988554 36677776 688899999999887653
No 286
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=46.16 E-value=1.4e+02 Score=30.01 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=39.0
Q ss_pred EEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007462 82 LTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 82 LlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
++.+.+-.-++++.++.|++.. +.--+|=.-..-+.+.+..|+.+|| +|++-|....++....+
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~~~~~~~~a~~aGA-~fivsp~~~~~v~~~~~ 101 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVLSPEQVDRLADAGG-RLIVTPNTDPEVIRRAV 101 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecCCHHHHHHHHHcCC-CEEECCCCCHHHHHHHH
Confidence 4444455556778888886542 2212232233457888999999999 56666766666654433
No 287
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.16 E-value=1.4e+02 Score=31.20 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=41.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhccc-CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEI-CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~-~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+|+||+ -|.|| .+|+.++.... ..++||+-+- .|-.+||. .+.++++...|.++....
T Consensus 36 ~Dlvi~----iGGDG-T~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDIVIS----VGGDG-TLLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCEEEE----ECCcH-HHHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCC
Confidence 788887 37788 46666654321 1478988554 58889998 688899999998887653
No 288
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.98 E-value=1.8e+02 Score=35.13 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=62.3
Q ss_pred CEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC---CC--HHHHHHHHHhcc
Q 007462 32 LRVLLVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS---IS--GFALLTLVMEHE 103 (603)
Q Consensus 32 lrVLLVDDD~~~---r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg---mD--GleLLr~Lr~~~ 103 (603)
.+|+||.-|..- .+.|+.+-+..|..+..+.+..+..+.++... .+|+||+|. +| .+ -++.+..|...
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDT--AGRs~~d~~l~eel~~l~~~- 291 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDT--VGMSQRDRNVSEQIAMLCGV- 291 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeC--CCCCccCHHHHHHHHHHhcc-
Confidence 588888888642 35566666677877777778888777776543 579999996 33 22 23444444321
Q ss_pred cCCCCeEEEEecCCCHH---HHHHHHHc----CCcEEEeCCC
Q 007462 104 ICKNIPVIMMSSQDSVS---TVYKCMMR----GAADYLVKPV 138 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~---~~~~al~~----GA~DyL~KP~ 138 (603)
..+.-.++++++..... .+.+.+.. +.+++|.-=+
T Consensus 292 ~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKL 333 (767)
T PRK14723 292 GRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKL 333 (767)
T ss_pred CCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEecc
Confidence 22445567777665443 34455543 6777764433
No 289
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.98 E-value=1.5e+02 Score=31.60 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=49.0
Q ss_pred EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 57 RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 57 ~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
-.+.+.+.++|.+.++.. +|+|++| +|.--+--+.+..++.. .++ .+|..|+--..+.+...-..|++-+-+
T Consensus 202 IeVEv~tl~ea~eal~~g---aDiI~LD-nm~~e~vk~av~~~~~~--~~~-v~ieaSGGI~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAEG---AELVLLD-NFPVWQTQEAVQRRDAR--APT-VLLESSGGLTLDTAAAYAETGVDYLAV 273 (289)
T ss_pred EEEEcCCHHHHHHHHHcC---CCEEEeC-CCCHHHHHHHHHHHhcc--CCC-EEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 355688999999999753 7999999 44422222233333222 233 467788888999999999999976643
No 290
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=45.91 E-value=1.7e+02 Score=28.95 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=47.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE--eCCCCHHHHHHHHHHH
Q 007462 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL--VKPVRRNELRNLWQHV 150 (603)
Q Consensus 80 LVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL--~KP~~~~eL~~~L~~v 150 (603)
|-++|+..--...++.++.+++. .++||++...-.+...+..+++.||+..+ ..-+..+.+..++...
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 44455544445567888888764 37999987655677788899999999997 3334446666666655
No 291
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=45.88 E-value=1.1e+02 Score=35.20 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPgmD--GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+.+.++++. . .|+|++|..- +.+ -++++++|+.. +++++|| +......+.+..++++||+...+
T Consensus 251 ~r~~~l~~a-g--~d~i~iD~~~-g~~~~~~~~i~~ik~~--~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 251 ERLEHLVKA-G--VDVVVLDSSQ-GDSIYQLEMIKYIKKT--YPELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHc-C--CCEEEEeCCC-CCcHHHHHHHHHHHHh--CCCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 344444443 3 8999999842 222 24788888763 3555554 34456788899999999998765
No 292
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.64 E-value=67 Score=33.63 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+.+++++++|.. .++|+|+|+-+. -...+.+|.++|++++|+--+..+|....++.+.
T Consensus 78 ~~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~ 141 (263)
T CHL00200 78 KILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCN 141 (263)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHH
Confidence 467888888742 578999998764 3556889999999999999888888766665553
No 293
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=45.58 E-value=2.4e+02 Score=25.83 Aligned_cols=110 Identities=16% Similarity=0.250 Sum_probs=69.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSY--RVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
....++|+.+...... +..+....+. .+.... ...+..+++.. .|++|+=... +.-|+.+++.+.
T Consensus 46 ~~~~l~i~G~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~----- 114 (172)
T PF00534_consen 46 PNYKLVIVGDGEYKKE-LKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA----- 114 (172)
T ss_dssp TTEEEEEESHCCHHHH-HHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH-----
T ss_pred CCeEEEEEcccccccc-ccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc-----
Confidence 3567888884444333 4445444443 343333 34566777765 5787775554 555678888774
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
..+|||+ +. .....+.+..+..+++..|.+.++|...|..++...
T Consensus 115 ~g~pvI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 115 CGCPVIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp TT-EEEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cccceee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 2567774 33 233346677888999999999999999999887553
No 294
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=45.30 E-value=92 Score=33.36 Aligned_cols=69 Identities=14% Similarity=0.051 Sum_probs=47.6
Q ss_pred EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 57 RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 57 ~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
-.+.+.+.++|.+.++.. +|+|++|-.-| -++-+.+... +.-.+|..|+--+.+.+.+.-..|++-+-+
T Consensus 211 IeVEv~sleea~ea~~~g---aDiI~LDn~s~----e~~~~av~~~---~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 211 VEVEVENLDELDQALKAG---ADIIMLDNFTT----EQMREAVKRT---NGRALLEVSGNVTLETLREFAETGVDFISV 279 (296)
T ss_pred EEEEeCCHHHHHHHHHcC---CCEEEeCCCCh----HHHHHHHHhh---cCCeEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 355688999999999853 79999995433 2222222211 122467778888999999999999976644
No 295
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.22 E-value=2.6e+02 Score=29.38 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=53.9
Q ss_pred CCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHH---HHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhc--
Q 007462 31 ALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLK---AWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH-- 102 (603)
Q Consensus 31 ~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~dg~e---ALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~-- 102 (603)
..+|.+|+-|.. ....++......|+.+..+.+..+ +++.+... ..+|+||+|..=-.-..-+++++|.+.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 468888888764 344455555667888887766544 44444432 248999999631111122333333221
Q ss_pred ccCCCCeEEEEecCCCH---HHHHHH-HHcCCcEEEe
Q 007462 103 EICKNIPVIMMSSQDSV---STVYKC-MMRGAADYLV 135 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~---~~~~~a-l~~GA~DyL~ 135 (603)
...++..++++++.... ....+. -..+.+.+|.
T Consensus 182 ~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 182 QVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred hhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 11233346667665332 222222 2355666653
No 296
>PRK00811 spermidine synthase; Provisional
Probab=45.14 E-value=1.8e+02 Score=30.43 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=44.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCC------CEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCC-----HHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSS------YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-----GFALLTL 98 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~G------y~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD-----GleLLr~ 98 (603)
..+|.+||=|+.+.+..+..|...+ -+|. ...|+.+.++. ....+|+||+|+.-|..- .-++++.
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~ 176 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPVGPAEGLFTKEFYEN 176 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCCCchhhhhHHHHHHH
Confidence 4589999999999999999886421 1332 35566654443 223599999998766422 2355555
Q ss_pred HHh
Q 007462 99 VME 101 (603)
Q Consensus 99 Lr~ 101 (603)
+++
T Consensus 177 ~~~ 179 (283)
T PRK00811 177 CKR 179 (283)
T ss_pred HHH
Confidence 544
No 297
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.10 E-value=1.1e+02 Score=30.99 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=38.6
Q ss_pred EeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 007462 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (603)
Q Consensus 83 lDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L 147 (603)
+++.|-.-+.++.+++|++.. ++ -+|=.-..-+.+.+.++.++||. ||+-|.-..++....
T Consensus 33 iEit~~tp~a~~~I~~l~~~~--~~-~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~a 93 (201)
T PRK06015 33 IEITLRTPAALDAIRAVAAEV--EE-AIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAAA 93 (201)
T ss_pred EEEeCCCccHHHHHHHHHHHC--CC-CEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 334444455777777776532 33 23333345588899999999995 777777666666443
No 298
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=45.04 E-value=2.2e+02 Score=28.45 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=51.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH--HHHHHHHHhccc
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYR-VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISG--FALLTLVMEHEI 104 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG--leLLr~Lr~~~~ 104 (603)
+...+|..||-++.....++.-++..|.. +.. ..|..+.+... ...||+||+|- |-..| -++++.|.....
T Consensus 74 r~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~---~~~fDlV~~DP--Py~~g~~~~~l~~l~~~~~ 148 (199)
T PRK10909 74 RYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP---GTPHNVVFVDP--PFRKGLLEETINLLEDNGW 148 (199)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc---CCCceEEEECC--CCCCChHHHHHHHHHHCCC
Confidence 33468999999999999999999887753 332 34555444321 12499999985 42333 456677765432
Q ss_pred CCCCeEEEEecC
Q 007462 105 CKNIPVIMMSSQ 116 (603)
Q Consensus 105 ~~~IPVImlSa~ 116 (603)
...--||++...
T Consensus 149 l~~~~iv~ve~~ 160 (199)
T PRK10909 149 LADEALIYVESE 160 (199)
T ss_pred cCCCcEEEEEec
Confidence 223345555543
No 299
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.67 E-value=1.4e+02 Score=31.83 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=59.4
Q ss_pred EEEEEecCHHHHHHHHHHH----HhCCC--E-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 33 RVLLVEADDSTRQIVTALL----RKSSY--R-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL----~~~Gy--~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
-|||=|.+-...-.+...+ +...+ . .+.+.+.++|.+.++.. +|+|++|=+-|. +--++++.++
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~ag---aDiImLDnmspe-~l~~av~~~~----- 239 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAG---ADIIMLDNMSLE-QIEQAITLIA----- 239 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHHhc-----
Confidence 5777777765554444444 33443 2 34588999999999753 799999943322 2223333332
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
.-.+|-.|+-...+.+......|+|-.-
T Consensus 240 -~~~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 240 -GRSRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred -CceEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 2246777888899999998899987654
No 300
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=44.46 E-value=1e+02 Score=30.80 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=35.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLl 83 (603)
|+|.|||----....+...|+..|+ ++....+..++ . .+|.||+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l----~----~~d~lIl 47 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV----A----AADRVVL 47 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh----c----CCCEEEE
Confidence 5999999888888889999999998 77777776653 2 3898887
No 301
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=44.29 E-value=2.6e+02 Score=30.88 Aligned_cols=62 Identities=8% Similarity=0.119 Sum_probs=41.7
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC-------CCCHHHHHHHHHHHHHhc
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK-------PVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K-------P~~~~eL~~~L~~v~rr~ 154 (603)
++++.+|++.-...++|||-..+-.+.+.+.+.+.+||+...+- |.-...|..-|...+.+.
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~ 307 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEK 307 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHc
Confidence 45666665431113799999999999999999999999875422 544555555555555443
No 302
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.23 E-value=1.3e+02 Score=32.26 Aligned_cols=93 Identities=14% Similarity=0.015 Sum_probs=58.6
Q ss_pred EEEEEecCHHHHHHHHHHHH---hC-C-CE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEADDSTRQIVTALLR---KS-S-YR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~---~~-G-y~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
-|||=|.+-...-.+...+. +. . .. .+.+.+.+++.+.++.. +|+|++|= |+--+--+.++.++
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~aG---aDiImLDn-mspe~l~~av~~~~------ 247 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAHG---AQSVLLDN-FTLDMMREAVRVTA------ 247 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcC---CCEEEECC-CCHHHHHHHHHhhc------
Confidence 56777766655443444442 21 1 22 34588999999999753 79999993 33222223333331
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.-.+|-.|+--..+.+.+.-..|++-.-+
T Consensus 248 ~~~~lEaSGGIt~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 248 GRAVLEVSGGVNFDTVRAFAETGVDRISI 276 (294)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 22467788888999999988999875543
No 303
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=43.99 E-value=1.7e+02 Score=28.25 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=48.3
Q ss_pred EEECCHHHHHHHHhcCCCCceEEEEeCCCCCC-------CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCc
Q 007462 59 TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI-------SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA 131 (603)
Q Consensus 59 ~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm-------DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~ 131 (603)
..+.+.+++.+..+. .+|.|++--..|.. -|++.++++.+.. .+||+.+-+-. .+.+..+.+.|++
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI~-~~~i~~l~~~Ga~ 172 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGIT-PENIPELREAGAD 172 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---TTTHHHHHHTT-S
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCCC-HHHHHHHHHcCCC
Confidence 457899997766653 37999998776543 3899999887643 58999998864 4556678899998
Q ss_pred EEE
Q 007462 132 DYL 134 (603)
Q Consensus 132 DyL 134 (603)
++-
T Consensus 173 gvA 175 (180)
T PF02581_consen 173 GVA 175 (180)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 304
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=43.94 E-value=3.5e+02 Score=27.78 Aligned_cols=81 Identities=12% Similarity=0.022 Sum_probs=47.0
Q ss_pred CEEEEEecC-H---HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEAD-D---STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD-~---~~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+|-++ . .....+...+++.|..++.. .+....+..+.... +|+||+-.. +.+.+.+++.++
T Consensus 137 ~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~--~dav~~~~~--~~~a~~~i~~~~ 212 (336)
T cd06326 137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAAR--PQAVIMVGA--YKAAAAFIRALR 212 (336)
T ss_pred ceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcC--CCEEEEEcC--cHHHHHHHHHHH
Confidence 456555333 2 33344556666777654331 35666666665543 888888542 235777888887
Q ss_pred hcccCCCCeEEEEecCCC
Q 007462 101 EHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d 118 (603)
+.. ..+||+.++....
T Consensus 213 ~~G--~~~~~~~~~~~~~ 228 (336)
T cd06326 213 KAG--GGAQFYNLSFVGA 228 (336)
T ss_pred hcC--CCCcEEEEeccCH
Confidence 655 3567776654443
No 305
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=43.88 E-value=2.5e+02 Score=28.57 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCC-----CCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MP-----gmDGleLLr~Lr~ 101 (603)
.++++|+.+.+. ...+..++...+. .|.. .-+..+...++.. .|++|+-..-+ ..-|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a- 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA- 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH-
Confidence 456777766543 3455555555433 2333 2345677777764 57777643331 223677787774
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
..+|||.. .... ..+.+..+..+++..|-+.++|.+.|..++.
T Consensus 284 ----~G~Pvi~~-~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 284 ----MGLPVIST-DVSG---IPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred ----cCCCEEec-CCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 36788753 2222 2345667778999999999999999988764
No 306
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=43.85 E-value=2.7e+02 Score=29.10 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=43.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
.|++|+=- ..+.-|+-+++.+. ..+|||....... ....+..|..+||+.|-+.++|...|..++..
T Consensus 279 ad~~v~~S-~~Eg~~~~~lEAma-----~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLTS-QSEGFGLSLMEALS-----HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEecc-cccccChHHHHHHh-----CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 35555422 22344677777773 3678886532211 12345678899999999999999999888643
No 307
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=43.77 E-value=3.5e+02 Score=30.41 Aligned_cols=103 Identities=15% Similarity=0.223 Sum_probs=62.2
Q ss_pred CCCEEEEEec---CHH-HHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCC------------C
Q 007462 30 MALRVLLVEA---DDS-TRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS------------I 90 (603)
Q Consensus 30 m~lrVLLVDD---D~~-~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPg------------m 90 (603)
....++.||- +.. ..+.++.+-... ...|+. +.+.++|..+++.. .|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG---ad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG---ADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCCccceecCCCc
Confidence 3477888887 332 223333332231 334443 67888888888743 677754321 11 1
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
--+.++..+.......++|||.--+......+.+|+.+||+..++-
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 1234444443322224689998778889999999999999998865
No 308
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=43.60 E-value=1.3e+02 Score=32.96 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=46.9
Q ss_pred CHHHHHHHHhcCCCCceEEEEe-CCC----CCC--CHHHHHHHHHhcccCCCCeEEEEecCC-C---H--HHHHHHHHcC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTE-VDL----PSI--SGFALLTLVMEHEICKNIPVIMMSSQD-S---V--STVYKCMMRG 129 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlD-l~M----Pgm--DGleLLr~Lr~~~~~~~IPVImlSa~~-d---~--~~~~~al~~G 129 (603)
+...|++.+.... ..+|+|+. -.. |+. =-+..+..|++. .++||++=+.+. . . .....|+.+|
T Consensus 240 e~~~Ave~i~~~G-n~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~---~~~PV~~d~~Hs~G~r~~~~~~a~aAva~G 315 (360)
T PRK12595 240 EFIYAAEYIMSQG-NGQIILCERGIRTYEKATRNTLDISAVPILKQE---THLPVMVDVTHSTGRRDLLLPTAKAALAIG 315 (360)
T ss_pred HHHHHHHHHHHCC-CCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH---hCCCEEEeCCCCCcchhhHHHHHHHHHHcC
Confidence 3445777776543 47899997 211 111 123334444432 368988734553 2 2 2556689999
Q ss_pred CcEE-EeCC-------------CCHHHHHHHHHHH
Q 007462 130 AADY-LVKP-------------VRRNELRNLWQHV 150 (603)
Q Consensus 130 A~Dy-L~KP-------------~~~~eL~~~L~~v 150 (603)
|++. |-|- +++++|..++..+
T Consensus 316 Adg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i 350 (360)
T PRK12595 316 ADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDEL 350 (360)
T ss_pred CCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHHH
Confidence 9964 5553 3355666555544
No 309
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=43.57 E-value=2.3e+02 Score=29.69 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=50.4
Q ss_pred CCEEEEEe-cCH---HHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 007462 31 ALRVLLVE-ADD---STRQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (603)
Q Consensus 31 ~lrVLLVD-DD~---~~r~lL~~lL~~~Gy~V~~-------A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~L 99 (603)
..+|.+|- |++ .....+...|++.|.+++. ..|....+..++... ||+|++- ..+-++..+++++
T Consensus 132 ~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~~--~~~~~~~~~~~~~ 207 (334)
T cd06356 132 GKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAK--PDFVMSI--LVGANHLSFYRQW 207 (334)
T ss_pred CCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcC--CCEEEEe--ccCCcHHHHHHHH
Confidence 34555554 332 3455667778888988753 235666667776654 9999963 3455788899999
Q ss_pred HhcccCCCCeEEEE
Q 007462 100 MEHEICKNIPVIMM 113 (603)
Q Consensus 100 r~~~~~~~IPVIml 113 (603)
++... ..+|++..
T Consensus 208 ~~~G~-~~~~~~~~ 220 (334)
T cd06356 208 AAAGL-GNIPMASS 220 (334)
T ss_pred HHcCC-ccCceeee
Confidence 87654 35677653
No 310
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=43.54 E-value=1.3e+02 Score=30.48 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=51.0
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgm-DG--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+..+..+.+.... .-+|++|+.--++ .| +++++++.+. ..+|||+--+..+.+.+.++...||+..++
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4455555555433 4799999976553 33 7889998764 368999888889999999999999999886
No 311
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.51 E-value=3.6e+02 Score=27.34 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=56.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHhcCCCCceEEEE-eCC------------------
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV----PDGLKAWEVLKGRPRNIDLILT-EVD------------------ 86 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A----~dg~eALe~L~~~~~~pDLVLl-Dl~------------------ 86 (603)
-.+-.+|..++......+.+.|...|++++.+ ..+.++++.+++.- ++++|- +..
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTVl~~~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTVLNPEQLAQAIEAGAQFIV 92 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeeccCHHHHHHHHHcCCCEEE
Confidence 33444555666666667777777778866553 36777777776543 565443 332
Q ss_pred CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 007462 87 LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (603)
Q Consensus 87 MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP 137 (603)
.|+.+- ++++.-++. .+|+| -+..+...+..|+++|++-+-+-|
T Consensus 93 sP~~~~-~vi~~a~~~----~i~~i--PG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 93 SPGLTP-PLLKAAQEG----PIPLI--PGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred CCCCCH-HHHHHHHHc----CCCEe--CCCCCHHHHHHHHHCCCCEEEEcc
Confidence 366665 566554431 23333 344445556777777776554444
No 312
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.46 E-value=85 Score=33.11 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=40.4
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L 147 (603)
+-+++++.+++.. ..+|||+|+-+. -...+.+|.+.|++++|+--+..++-....
T Consensus 80 ~~lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~ 140 (265)
T COG0159 80 DTLELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELL 140 (265)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Confidence 4577888887543 689999999765 344577899999999999866666544333
No 313
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.40 E-value=1.4e+02 Score=31.32 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=43.7
Q ss_pred CHHHHHHHHhcCCCCceEEEEe-----CC-----CCCCCHHHHHHHHHhcccCCCCeEEE-EecCC-CH-----HHHHHH
Q 007462 63 DGLKAWEVLKGRPRNIDLILTE-----VD-----LPSISGFALLTLVMEHEICKNIPVIM-MSSQD-SV-----STVYKC 125 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlD-----l~-----MPgmDGleLLr~Lr~~~~~~~IPVIm-lSa~~-d~-----~~~~~a 125 (603)
+...|++++.... ..+|+|+. +. ..++.++..++++ .++|||+ .| +. .. .....|
T Consensus 137 e~~~A~e~i~~~G-n~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~------~~lPVivd~S-Hs~G~r~~v~~~a~AA 208 (250)
T PRK13397 137 EYLGALSYLQDTG-KSNIILCERGVRGYDVETRNMLDIMAVPIIQQK------TDLPIIVDVS-HSTGRRDLLLPAAKIA 208 (250)
T ss_pred HHHHHHHHHHHcC-CCeEEEEccccCCCCCccccccCHHHHHHHHHH------hCCCeEECCC-CCCcccchHHHHHHHH
Confidence 3456777777543 47899997 11 2234455555533 3689998 56 54 32 677788
Q ss_pred HHcCCcEEE-eCCCCH
Q 007462 126 MMRGAADYL-VKPVRR 140 (603)
Q Consensus 126 l~~GA~DyL-~KP~~~ 140 (603)
+.+||++++ -|-+++
T Consensus 209 vA~GAdGl~IE~H~~P 224 (250)
T PRK13397 209 KAVGANGIMMEVHPDP 224 (250)
T ss_pred HHhCCCEEEEEecCCc
Confidence 999998754 554444
No 314
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.31 E-value=2.6e+02 Score=29.75 Aligned_cols=103 Identities=16% Similarity=0.291 Sum_probs=60.6
Q ss_pred CEEEEEe--cCHHHH---HHHHHHHHhCCCEEEEECCHHH---HHH-------H--HhcCCCCceEEEEeCCCCCCCHHH
Q 007462 32 LRVLLVE--ADDSTR---QIVTALLRKSSYRVTAVPDGLK---AWE-------V--LKGRPRNIDLILTEVDLPSISGFA 94 (603)
Q Consensus 32 lrVLLVD--DD~~~r---~lL~~lL~~~Gy~V~~A~dg~e---ALe-------~--L~~~~~~pDLVLlDl~MPgmDGle 94 (603)
.+|+||- +.+... ..|..+|...|+++........ ++. . .......+|+||+ -|.|| .
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDG-T 80 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDG-T 80 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcH-H
Confidence 4688873 334333 4455556677888776431111 110 0 0101113677776 27788 3
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 95 LLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+|+..+... ..++||+-+- .|-.+||.- +..+++...|..+++..
T Consensus 81 ~L~aa~~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 81 FLSVAREIA-PRAVPIIGIN-------------QGHLGFLTQ-IPREYMTDKLLPVLEGK 125 (296)
T ss_pred HHHHHHHhc-ccCCCEEEEe-------------cCCCeEeec-cCHHHHHHHHHHHHcCC
Confidence 555554332 2478998665 477889985 88999999999887653
No 315
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=43.21 E-value=1.8e+02 Score=32.52 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=65.8
Q ss_pred hhcCCCEEEEEec-CHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeC-CCCCCCH--HHHHHHHH
Q 007462 27 LQRMALRVLLVEA-DDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEV-DLPSISG--FALLTLVM 100 (603)
Q Consensus 27 l~~m~lrVLLVDD-D~~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl-~MPgmDG--leLLr~Lr 100 (603)
+-+..-+||+.+| -..++.++..+|.+.|++|..+. +..+.++.+... +.++|+++- .-|-|.- +..+.++.
T Consensus 98 ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~--~tk~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 98 LLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEP--NTKLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred hcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhccc--CceEEEEeCCCCcccccccHHHHHHHH
Confidence 3344568999988 66788899999999999998765 566677777542 379999986 2233322 22233332
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
.. .. .++++-..-..-...+.+.+|||-.+
T Consensus 176 ~~---~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 176 KA---YG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred Hh---cC-CEEEEECCcccccccChhhcCCCEEE
Confidence 11 12 45555554455567788899987664
No 316
>PRK10742 putative methyltransferase; Provisional
Probab=42.98 E-value=2.2e+02 Score=29.81 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=40.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC------CC----EEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS------SY----RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~------Gy----~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgm 90 (603)
.-+|.+||-++.+..+|++-|+.. +- ++.. ..+..+.|..+ ...||+|++|=+-|..
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCCCCCC
Confidence 347999999999999999999874 21 1222 34555555543 2359999999988863
No 317
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=42.93 E-value=2.2e+02 Score=29.66 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=49.0
Q ss_pred EEEEEecC----HHHHHHHHHHHHhC--CCEEEE-------ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 007462 33 RVLLVEAD----DSTRQIVTALLRKS--SYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (603)
Q Consensus 33 rVLLVDDD----~~~r~lL~~lL~~~--Gy~V~~-------A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~L 99 (603)
+|.+|..+ ......++..|+.. +.+++. ..+....+..|.... +|+||+... +.+...+++++
T Consensus 140 ~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~--~d~ii~~~~--~~~~~~~~~~~ 215 (346)
T cd06330 140 TWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAK--PDAIFSSLW--GGDLVTFVRQA 215 (346)
T ss_pred EEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcC--CCEEEEecc--cccHHHHHHHH
Confidence 56666554 23345566666666 444432 235566666665544 899987543 46778888888
Q ss_pred HhcccCCCCeEEEEecC
Q 007462 100 MEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~ 116 (603)
++....+.+++|.....
T Consensus 216 ~~~g~~~~~~~~~~~~~ 232 (346)
T cd06330 216 NARGLFDGTTVVLTLTG 232 (346)
T ss_pred HhcCcccCceEEeeccc
Confidence 87665556777765543
No 318
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=42.87 E-value=2.8e+02 Score=28.16 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=48.2
Q ss_pred hHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCC-CHHHHHHH
Q 007462 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTL 98 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgm-DGleLLr~ 98 (603)
+-..+.+...+|..||=++......+..+...|. .+.. ..+..+..... . ..+|+|++...+.-+ +-..+++.
T Consensus 58 ~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~--~~fD~V~~~~vl~~~~~~~~~l~~ 134 (255)
T PRK11036 58 TAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-E--TPVDLILFHAVLEWVADPKSVLQT 134 (255)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-C--CCCCEEEehhHHHhhCCHHHHHHH
Confidence 4444455567999999999999999998887764 2333 33444432222 2 249999987655432 33456666
Q ss_pred HHh
Q 007462 99 VME 101 (603)
Q Consensus 99 Lr~ 101 (603)
+..
T Consensus 135 ~~~ 137 (255)
T PRK11036 135 LWS 137 (255)
T ss_pred HHH
Confidence 654
No 319
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=42.45 E-value=49 Score=35.61 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=41.6
Q ss_pred chHHhhhcCCCEEEEEecCH-------HHHHHHHHHHHhCCCEEEE---ECCHHHHH-HHHhcC-CCCceEEEEe
Q 007462 22 KWETFLQRMALRVLLVEADD-------STRQIVTALLRKSSYRVTA---VPDGLKAW-EVLKGR-PRNIDLILTE 84 (603)
Q Consensus 22 ~we~fl~~m~lrVLLVDDD~-------~~r~lL~~lL~~~Gy~V~~---A~dg~eAL-e~L~~~-~~~pDLVLlD 84 (603)
.|++|-++-...||+|.|.. .....|..+|+.+|+++.. +.|-.+.+ +.++.. ...+||||+=
T Consensus 148 ~~~~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITT 222 (312)
T PRK03604 148 HKRRFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITT 222 (312)
T ss_pred cccccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEEC
Confidence 69988655555699999943 5667899999999997664 34444433 333321 1237888873
No 320
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=42.40 E-value=41 Score=32.81 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCC----CCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 007462 45 QIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLP----SISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MP----gmDGleLLr~Lr~~~~~~~IPVImlSa~~d 118 (603)
..|.. |+..|+.+.. +..+...+..+.... ||.|-+|..+. ......+++.|.......++. |+.++.++
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~l~--~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLASLP--PDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIK-VIAEGVES 213 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHHHC--GSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-E-EEEECE-S
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhhcc--cccceeecccccccchhhHHHHHHHHHHHhhccccc-cceeecCC
Confidence 44554 6789998654 545555666665544 99999998655 223455555554322222444 45688889
Q ss_pred HHHHHHHHHcCCcE
Q 007462 119 VSTVYKCMMRGAAD 132 (603)
Q Consensus 119 ~~~~~~al~~GA~D 132 (603)
.+....+..+|++-
T Consensus 214 ~~~~~~l~~~G~~~ 227 (236)
T PF00563_consen 214 EEQLELLKELGVDY 227 (236)
T ss_dssp HHHHHHHHHTTESE
T ss_pred HHHHHHHHHcCCCE
Confidence 99999999999863
No 321
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=42.26 E-value=2.6e+02 Score=28.55 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=59.1
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEE-E-----CCHHHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeE
Q 007462 38 EADDSTRQIVTALLRKSSYRVTA-V-----PDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 38 DDD~~~r~lL~~lL~~~Gy~V~~-A-----~dg~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IPV 110 (603)
.|.....++++.+- +.++.|.. . .+..+..+.+++.. .|.|-.+...++ .--++.+++++ .++||
T Consensus 123 ~~p~~l~eiv~avr-~~~~pVsvKir~g~~~~~~~la~~l~~aG--~d~ihv~~~~~g~~ad~~~I~~i~-----~~ipV 194 (233)
T cd02911 123 KDPERLSEFIKALK-ETGVPVSVKIRAGVDVDDEELARLIEKAG--ADIIHVDAMDPGNHADLKKIRDIS-----TELFI 194 (233)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEEcCCcCcCHHHHHHHHHHhC--CCEEEECcCCCCCCCcHHHHHHhc-----CCCEE
Confidence 34445555555553 34554432 1 24555556666544 788777766654 22356666664 36899
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
|..-.-.+.+.+.+++..||+...+
T Consensus 195 IgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 195 IGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EEECCcCCHHHHHHHHHcCCCEEEE
Confidence 9988889999999999999988764
No 322
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=42.20 E-value=2.2e+02 Score=28.31 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=47.8
Q ss_pred CHHHHHHHHhcCCCCce-EEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 63 DGLKAWEVLKGRPRNID-LILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MPgm---DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+.++.+.+.. .+ ++++|+..-++ --+++++++++. .++|||...+..+.+.+.+++..||+++++-
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 3445555555432 34 56777644322 236888888754 3689999998899999999999999998763
No 323
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=42.20 E-value=2.8e+02 Score=29.00 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=50.5
Q ss_pred CEEEEEecCH----HHHHHHHHHHHh--CCCEEEE-------E-CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHH
Q 007462 32 LRVLLVEADD----STRQIVTALLRK--SSYRVTA-------V-PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (603)
Q Consensus 32 lrVLLVDDD~----~~r~lL~~lL~~--~Gy~V~~-------A-~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr 97 (603)
-+|.||.++. ...+.+...|++ .|.+|+. . .|....+..++... +|+|++...-+ ++..+++
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~--~d~v~~~~~~~--~~~~~~~ 219 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASG--ADTVITGNWGN--DLLLLVK 219 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcC--CCEEEEcccCc--hHHHHHH
Confidence 3566665433 245666777887 8887653 1 45556677776654 99999966433 6788999
Q ss_pred HHHhcccCCCCeEEEEec
Q 007462 98 LVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 98 ~Lr~~~~~~~IPVImlSa 115 (603)
.+++... +++++..+.
T Consensus 220 ~~~~~g~--~~~~~~~~~ 235 (342)
T cd06329 220 QAADAGL--KLPFYTPYL 235 (342)
T ss_pred HHHHcCC--CceEEeccc
Confidence 9987653 566665443
No 324
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.12 E-value=2.1e+02 Score=29.64 Aligned_cols=84 Identities=13% Similarity=0.187 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 40 DDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 40 D~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
-......+...|.+.|+.+....+.. ......|+||+ -|.||. +|+.++.. ++||+-+.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~----~~Pilgin----- 69 (256)
T PRK14075 11 KEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV----GTPLVGFK----- 69 (256)
T ss_pred HHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc----CCCEEEEe-----
Confidence 33445566677777888777654422 11124788887 377884 56666542 78988665
Q ss_pred HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 120 STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 120 ~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
.|-.+||. .+..+++...|..+...
T Consensus 70 --------~G~lGfl~-~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 70 --------AGRLGFLS-SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred --------CCCCcccc-ccCHHHHHHHHHHHHcC
Confidence 45577787 68889999888887654
No 325
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=42.04 E-value=1.9e+02 Score=29.52 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=61.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+++|+.+.+.. ..+.+.+...+. .|.......+..+++.. .|++|+-.... .-|+.+++.+.. .+
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~e-~~~~~~~Ea~a~-----G~ 287 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAWE-GFGLVVAEAMAC-----EL 287 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEeccccc-CCChHHHHHHHc-----CC
Confidence 4678888776543 455566655443 34444434455556643 57777643332 236777877742 56
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
|||+ +....... .+.. .+++..|-+.+++...+..++
T Consensus 288 PvI~-~~~~~~~e---~i~~--~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 288 PVVA-TDAGGVRE---VVGD--SGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred CEEE-ecCCChhh---EecC--CceEeCCCCHHHHHHHHHHHH
Confidence 8875 32222221 1211 567888999999999998886
No 326
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=41.93 E-value=2.9e+02 Score=30.37 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=68.3
Q ss_pred CCEEEEEecCH-----HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADD-----STRQIVTALLRKSSY--RVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~-----~~r~lL~~lL~~~Gy--~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
..+++||.+.. ...+.|+.+.+..+. .|.... +-++..+++.. .|++|.=.. ...=|+-+++.+..
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~-~E~Fgi~~lEAMa~ 347 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMW-NEHFGIGVVEYMAA 347 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCc-cCCcccHHHHHHHc
Confidence 36888888742 356677777776665 355443 45677777764 577776332 23338888888743
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.+|||....-.....++.-...|..+||.. +.++|...|..++.
T Consensus 348 -----G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 348 -----GLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred -----CCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 467775443222222211111578899963 89999999988865
No 327
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=41.86 E-value=1.9e+02 Score=29.89 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=42.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCC-----HHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSS-----YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-----GFALLTLV 99 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~G-----y~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD-----GleLLr~L 99 (603)
..+|.+||-++.+.+..+..|...+ -++. ...|+.+.++.. ...+|+||+|..-|... ..++++.+
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~ 172 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDPVGPAETLFTKEFYELL 172 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCCCCcccchhHHHHHHHH
Confidence 4589999999999888888875431 1222 235665555433 23599999998655322 23555555
Q ss_pred Hh
Q 007462 100 ME 101 (603)
Q Consensus 100 r~ 101 (603)
++
T Consensus 173 ~~ 174 (270)
T TIGR00417 173 KK 174 (270)
T ss_pred HH
Confidence 43
No 328
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=41.74 E-value=1.5e+02 Score=32.22 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=44.8
Q ss_pred CCEEEEEecCHH-----HHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH
Q 007462 31 ALRVLLVEADDS-----TRQIVTALLRKSSYRVTAV---------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (603)
Q Consensus 31 ~lrVLLVDDD~~-----~r~lL~~lL~~~Gy~V~~A---------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL 96 (603)
..|||||-|... ....+...|+..|.++..+ ++..++++.+++.. +|+||- ..|.+-+++.
T Consensus 25 g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Iia---vGGGS~iD~a 99 (380)
T cd08185 25 GKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVVG---LGGGSSMDTA 99 (380)
T ss_pred CCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHH
Confidence 368999998765 3356777787777765543 24567777777654 999883 4577777777
Q ss_pred HHHH
Q 007462 97 TLVM 100 (603)
Q Consensus 97 r~Lr 100 (603)
+.+.
T Consensus 100 K~ia 103 (380)
T cd08185 100 KAIA 103 (380)
T ss_pred HHHH
Confidence 7664
No 329
>PRK10818 cell division inhibitor MinD; Provisional
Probab=41.58 E-value=44 Score=34.06 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=14.2
Q ss_pred chHHhhhcCCCEEEEEecCH
Q 007462 22 KWETFLQRMALRVLLVEADD 41 (603)
Q Consensus 22 ~we~fl~~m~lrVLLVDDD~ 41 (603)
.+-..+.+...+|||||-|+
T Consensus 22 nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 22 AIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred HHHHHHHHCCCeEEEEECCC
Confidence 33344555678999999998
No 330
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.57 E-value=3.2e+02 Score=30.33 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=60.0
Q ss_pred CCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCC--CCCCCHHHHHHHHHhc-c-
Q 007462 31 ALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSISGFALLTLVMEH-E- 103 (603)
Q Consensus 31 ~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~--MPgmDGleLLr~Lr~~-~- 103 (603)
..+|+||.-|.. ....|+.+.+..|+.+..+.+..+....+... ..+|+||+|.. ++ .+-.. +.++... .
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~ 282 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMK-LAEMKELLNA 282 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHh
Confidence 468999998863 23335555556788777777777666666544 35999999973 22 23332 3333221 1
Q ss_pred cCCC-CeEEEEecCCCHHHHHHHH----HcCCcEEEeC
Q 007462 104 ICKN-IPVIMMSSQDSVSTVYKCM----MRGAADYLVK 136 (603)
Q Consensus 104 ~~~~-IPVImlSa~~d~~~~~~al----~~GA~DyL~K 136 (603)
..+. -.++++++......+.+.+ ..|.+.+|.-
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~T 320 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFT 320 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 1122 3667888876555544433 2567777543
No 331
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=41.54 E-value=2.6e+02 Score=29.97 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=53.0
Q ss_pred cCCCEEEEEecCHHHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHhcCCCCceEEEEeCC--CCCCCH-HHH
Q 007462 29 RMALRVLLVEADDSTR---QIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEVD--LPSISG-FAL 95 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r---~lL~~lL~~~Gy~V~~A~---dg----~eALe~L~~~~~~pDLVLlDl~--MPgmDG-leL 95 (603)
....+|+|++-|.... +.+..+....+..++... ++ .+++...... .+|+||+|.- ++..+. ++-
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~--~~D~ViIDTaGr~~~~~~l~~e 217 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKAR--GIDVLIIDTAGRLHNKTNLMEE 217 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCCcCCHHHHHH
Confidence 3456999999886432 234444455566655442 22 2333333333 4999999973 332222 233
Q ss_pred HHHHHhc-----ccCCCCeEEEEecCCCHHHHHHHH----HcCCcEEEeC
Q 007462 96 LTLVMEH-----EICKNIPVIMMSSQDSVSTVYKCM----MRGAADYLVK 136 (603)
Q Consensus 96 Lr~Lr~~-----~~~~~IPVImlSa~~d~~~~~~al----~~GA~DyL~K 136 (603)
|+.+... ...++-.++++.+......+.++. ..+.+.+|.-
T Consensus 218 L~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlT 267 (318)
T PRK10416 218 LKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILT 267 (318)
T ss_pred HHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEE
Confidence 3333221 112444567777665443333332 2456666543
No 332
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=41.34 E-value=4.6e+02 Score=30.81 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=66.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+++||.|.+. +..|+.+....|. .|.....-.+..+++.. .|++++=. ..+.-|+-+++.+. ..+
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS-~~EGfp~vlLEAMA-----~Gl 497 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFS-RYEGLPNVLIEAQM-----VGV 497 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEcc-cccCccHHHHHHHH-----hCC
Confidence 467888887654 5567777776665 35554444455555543 68887633 23445778888774 367
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
|||.... .. ..+.+..|..+||+.|.+...|...+.
T Consensus 498 PVVATdv-GG---~~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 498 PVISTPA-GG---SAECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred CEEEeCC-CC---cHHHcccCCcEEEECCCChhhHHHHHH
Confidence 9985433 22 234556899999999998877766553
No 333
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=41.32 E-value=2e+02 Score=31.15 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCEEEE--EC-----CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 44 RQIVTALLRKSSYRVTA--VP-----DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~--A~-----dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
.+.+.+.++..|.+|+. +. +....|..++.. .+|.||+|..- ..+..+++++++...
T Consensus 140 lq~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~--~~~~iil~~~~--~~~~~il~qa~~~gm 203 (371)
T cd06388 140 LQAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRR--QEKKFVIDCEI--ERLQNILEQIVSVGK 203 (371)
T ss_pred HHHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhccc--ccEEEEEECCH--HHHHHHHHHHHhcCc
Confidence 33344444555766553 21 344455556554 38999998643 346788888876543
No 334
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.31 E-value=3.2e+02 Score=29.34 Aligned_cols=103 Identities=19% Similarity=0.257 Sum_probs=61.4
Q ss_pred CEEEEEec--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HhcCCCCceEEEEeCCCCCC
Q 007462 32 LRVLLVEA--DDS---TRQIVTALLRKSSYRVTAVPDGLKAWEV----------------LKGRPRNIDLILTEVDLPSI 90 (603)
Q Consensus 32 lrVLLVDD--D~~---~r~lL~~lL~~~Gy~V~~A~dg~eALe~----------------L~~~~~~pDLVLlDl~MPgm 90 (603)
.+|+||-. .+. ....|..+|...|++|.........+.. .......+|+||+ -|.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 46888733 233 3455666677788887765433222210 0111113677776 377
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|| .+|+..+... ..++||+-+- .|-.+||.- +.++++...|+.+++..
T Consensus 82 DG-T~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 82 DG-TILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CH-HHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 88 3445444322 3578988654 377788875 77899999999887654
No 335
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=41.18 E-value=1.7e+02 Score=30.87 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=34.4
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
++++.+|++.- .+++|||...+-.+.+.+.+++.+||+...+
T Consensus 239 l~~v~~~~~~~-~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAP-EPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 67888887642 2479999999999999999999999987653
No 336
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=41.16 E-value=2.4e+02 Score=30.66 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=46.0
Q ss_pred CEEEEEecCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHH
Q 007462 32 LRVLLVEADDSTR-----QIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (603)
Q Consensus 32 lrVLLVDDD~~~r-----~lL~~lL~~~Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr 97 (603)
-|+|||-|..... ..+...|...|+++..+. +..++++.+++.. +|+|| .+.|.+-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~II---avGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWII---ALGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEE---EeCCccHHHHHH
Confidence 5899998876654 567788887787765542 3567777777654 89887 356777788777
Q ss_pred HHH
Q 007462 98 LVM 100 (603)
Q Consensus 98 ~Lr 100 (603)
.+.
T Consensus 99 ~ia 101 (375)
T cd08179 99 AMW 101 (375)
T ss_pred HHH
Confidence 764
No 337
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=41.02 E-value=3.8e+02 Score=26.93 Aligned_cols=106 Identities=17% Similarity=0.276 Sum_probs=63.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
.++++|+.+.+. ...+..+....+. .|. ..-+..+..+++.. .|++|+-... +.-|+.+++.+. .
T Consensus 233 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~l~~s~~-e~~~~~~~Ea~~-----~ 301 (374)
T cd03817 233 DVKLVIVGDGPE-REELEELARELGLADRVIFTGFVPREELPDYYKA----ADLFVFASTT-ETQGLVLLEAMA-----A 301 (374)
T ss_pred CeEEEEEeCCch-HHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHH----cCEEEecccc-cCcChHHHHHHH-----c
Confidence 467777776553 3344555443332 222 23345666677754 5777764332 334677777763 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.+|||..- .. ...+.+..|..+++..+.+. ++...+..++.
T Consensus 302 g~PvI~~~-~~---~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~ 342 (374)
T cd03817 302 GLPVVAVD-AP---GLPDLVADGENGFLFPPGDE-ALAEALLRLLQ 342 (374)
T ss_pred CCcEEEeC-CC---ChhhheecCceeEEeCCCCH-HHHHHHHHHHh
Confidence 67888533 22 23355667788999998887 78877777754
No 338
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.97 E-value=1.9e+02 Score=33.63 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=34.9
Q ss_pred CEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeC
Q 007462 32 LRVLLVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 32 lrVLLVDDD~~~---r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl 85 (603)
.+|.||+-|... .+.+..+-...|+.+..+.+..+....++... .+|+||+|.
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDT 436 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDT 436 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecC
Confidence 578888877532 23444444556777777777666666665443 489999996
No 339
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=40.94 E-value=2.6e+02 Score=28.63 Aligned_cols=107 Identities=8% Similarity=0.061 Sum_probs=66.3
Q ss_pred HHhhhcC---CCE-EEEEecCHHHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHhcCCCCceEEEEeCCCCCC------
Q 007462 24 ETFLQRM---ALR-VLLVEADDSTRQIVTALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSI------ 90 (603)
Q Consensus 24 e~fl~~m---~lr-VLLVDDD~~~r~lL~~lL~~~Gy~V~~-A--~dg~eALe~L~~~~~~pDLVLlDl~MPgm------ 90 (603)
++|+... ... |++.|-.......+...+++.|..... + .+..+.++.+.... .|.|++=-.+|..
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCC
Confidence 5555443 234 455555665555677777888876443 2 24555566555422 3444332224422
Q ss_pred --CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 91 --SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 91 --DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+.+++|++. .++||++=.+-.+.+.+.++.+. |+.+++-
T Consensus 172 ~~~~~~~i~~lr~~---~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 172 PDDLKELIKRIRKY---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred ChhHHHHHHHHHhc---CCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 245677777653 47899987788888888899999 9999986
No 340
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=40.65 E-value=2.2e+02 Score=29.48 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=49.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC---EEEE--EC---CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSY---RVTA--VP---DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy---~V~~--A~---dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
.+|.||-++......+..+++..+. .|.. .. +....+..++... +|+||+.. ...++..+++++++..
T Consensus 130 ~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~--~d~vv~~~--~~~~~~~~~~qa~~~g 205 (327)
T cd06382 130 KSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSG--DNRIIIDC--SADILIELLKQAQQVG 205 (327)
T ss_pred cEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhcC--ceEEEEEC--CHHHHHHHHHHHHHhC
Confidence 3566665555566677888876653 3322 22 4566777777654 89999865 3456788888887765
Q ss_pred cCCCCeEEEEecC
Q 007462 104 ICKNIPVIMMSSQ 116 (603)
Q Consensus 104 ~~~~IPVImlSa~ 116 (603)
......+.+++..
T Consensus 206 ~~~~~~~~i~~~~ 218 (327)
T cd06382 206 MMSEYYHYIITNL 218 (327)
T ss_pred ccccceEEEEecC
Confidence 5443333444444
No 341
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=40.64 E-value=3.1e+02 Score=28.14 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=56.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCC-----------------------C
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD-----------------------L 87 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~-----------------------M 87 (603)
..+|..||-++......+.-+...+.++.. .|..+.+..... ..||+||+|-- .
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~--~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~ 186 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALR--GRVDILAANAPYVPTDAIALMPPEARDHEPRVALD 186 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcC--CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhc
Confidence 358999999999999988888877765543 343333321111 24999999841 1
Q ss_pred CCCCHHHHHHHHHhc---ccCCCCeEEEEecCCCHHHHHHHH
Q 007462 88 PSISGFALLTLVMEH---EICKNIPVIMMSSQDSVSTVYKCM 126 (603)
Q Consensus 88 PgmDGleLLr~Lr~~---~~~~~IPVImlSa~~d~~~~~~al 126 (603)
.+.||+++++.|-.. ...+.-.+++.........+...+
T Consensus 187 gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l 228 (251)
T TIGR03704 187 GGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAF 228 (251)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHH
Confidence 235788777776432 122344555555555555544444
No 342
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=40.56 E-value=1.1e+02 Score=34.51 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
.+.+..+++. .+|+|.+|..-.. ...++++++|++. ++++|||+ ..-.+.+.+..++++||+.+.
T Consensus 226 ~~r~~~L~~a---G~d~I~vd~a~g~~~~~~~~i~~i~~~--~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 226 KERAEALVKA---GVDVIVIDSSHGHSIYVIDSIKEIKKT--YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHhHHHHHHHHHHHh--CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 4556655553 3899999985543 3467788888764 36788776 455678888999999998774
No 343
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=40.26 E-value=3.5e+02 Score=28.57 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=60.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKS-SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
++++++-+++..+..+..++... |..+..... +...++.. .|++|+. +|.-.++.+ . ..+|+
T Consensus 221 ~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~----aDl~v~~------sG~~~lEa~-a----~G~Pv 283 (380)
T PRK00025 221 LRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG--QKREAMAA----ADAALAA------SGTVTLELA-L----LKVPM 283 (380)
T ss_pred eEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc--cHHHHHHh----CCEEEEC------ccHHHHHHH-H----hCCCE
Confidence 56777765566666666666665 555444331 33444432 5888884 477667443 2 36798
Q ss_pred EEEecCCCHH-HH------------HHHHHcC--CcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 111 IMMSSQDSVS-TV------------YKCMMRG--AADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 111 ImlSa~~d~~-~~------------~~al~~G--A~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|++-...... .+ .+.+..+ +..++.+..+.++|...+..++..
T Consensus 284 I~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 284 VVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLAD 341 (380)
T ss_pred EEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC
Confidence 8773322111 01 1122211 455778889999999888887643
No 344
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=40.20 E-value=3.6e+02 Score=30.07 Aligned_cols=61 Identities=28% Similarity=0.428 Sum_probs=40.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC-EEEEE-------------------CCHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTAV-------------------PDGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy-~V~~A-------------------~dg~eALe~L~~~~~~pDLVLlDl~MPgm 90 (603)
.++||||..--....+...+.+...+ .+.++ .|.++.++.++... +|+|+....-|-.
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~--iD~Vv~g~E~~l~ 81 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNP--FDLIVVGPEDPLV 81 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHcC--CCEEEECCchHHH
Confidence 37999999999888888887665322 22222 35555556666544 9999987766655
Q ss_pred CHH
Q 007462 91 SGF 93 (603)
Q Consensus 91 DGl 93 (603)
.|+
T Consensus 82 ~gl 84 (426)
T PRK13789 82 AGF 84 (426)
T ss_pred HHH
Confidence 555
No 345
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=40.10 E-value=1.5e+02 Score=31.40 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=54.8
Q ss_pred CCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCC--C---EEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCC-
Q 007462 18 EGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSS--Y---RVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSI- 90 (603)
Q Consensus 18 ~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~G--y---~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm- 90 (603)
.+.+-||-......-+|.+||=|+.+.++-+..|-... . +|. ...||.+-++... ..+|+||+|..-|..
T Consensus 87 dG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~---~~fDvIi~D~tdp~gp 163 (282)
T COG0421 87 DGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE---EKFDVIIVDSTDPVGP 163 (282)
T ss_pred ccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC---CcCCEEEEcCCCCCCc
Confidence 34555666666666899999999999999999997543 2 232 2456555554433 359999999988831
Q ss_pred ----CHHHHHHHHHhc
Q 007462 91 ----SGFALLTLVMEH 102 (603)
Q Consensus 91 ----DGleLLr~Lr~~ 102 (603)
--.++.+.+++.
T Consensus 164 ~~~Lft~eFy~~~~~~ 179 (282)
T COG0421 164 AEALFTEEFYEGCRRA 179 (282)
T ss_pred ccccCCHHHHHHHHHh
Confidence 124666666543
No 346
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=40.07 E-value=1.3e+02 Score=31.47 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=52.8
Q ss_pred HHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCC----CC---CCHHHHHHHHHhcccCCCCeEEE
Q 007462 47 VTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDL----PS---ISGFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 47 L~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~M----Pg---mDGleLLr~Lr~~~~~~~IPVIm 112 (603)
|...+...|.-|..- .+...|++.+.... ..+|+|+.... |. .--+..+..|++. .++||++
T Consensus 124 LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~G-n~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~---~~~pV~~ 199 (260)
T TIGR01361 124 LLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSG-NGNVILCERGIRTFEKATRNTLDLSAVPVLKKE---THLPIIV 199 (260)
T ss_pred HHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh---hCCCEEE
Confidence 334444556555431 23455777776543 46899998622 21 1134445555432 3689998
Q ss_pred EecCC-C-----HHHHHHHHHcCCcE-EEeCCCCH
Q 007462 113 MSSQD-S-----VSTVYKCMMRGAAD-YLVKPVRR 140 (603)
Q Consensus 113 lSa~~-d-----~~~~~~al~~GA~D-yL~KP~~~ 140 (603)
-+.+. . ......|..+||++ +|-|=+++
T Consensus 200 ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~ 234 (260)
T TIGR01361 200 DPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDP 234 (260)
T ss_pred cCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 55553 3 55666789999998 77775554
No 347
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=39.89 E-value=1.9e+02 Score=31.91 Aligned_cols=94 Identities=9% Similarity=0.069 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCC----CHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 41 DSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI----SGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 41 ~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm----DGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
...-+.|...|...||+.+... ..+|||++...-.-. ..+++++++++.. ++++||+.-.+
T Consensus 10 ~~ds~~~~~~l~~~g~~~~~~~-------------~~aD~v~intctv~~~a~~~~~~~i~~~k~~~--p~~~vvvgGc~ 74 (414)
T TIGR01579 10 QYESESLKNQLIQKGYEVVPDE-------------DKADVYIINTCTVTAKADSKARRAIRRARRQN--PTAKIIVTGCY 74 (414)
T ss_pred HHHHHHHHHHHHHCcCEECCCc-------------ccCCEEEEeccccchHHHHHHHHHHHHHHhhC--CCcEEEEECCc
Confidence 3445678888888899765321 237999998654443 3688888886543 55665544333
Q ss_pred CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 117 DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
. ...-.+++.....|+++.+-....+..++...
T Consensus 75 a-~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 75 A-QSNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred c-ccCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 3 22223345566778999888888888777643
No 348
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=39.85 E-value=1.6e+02 Score=32.30 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=40.4
Q ss_pred CceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 77 NIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 77 ~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
.+|+|++|+--.... -+++++.|++. +|+++|| .-.....+.+...+.+||+..-
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~--~P~~~vI-aGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREA--WPDKTIC-AGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHh--CCCCcEE-EecccCHHHHHHHHHcCCCEEE
Confidence 489999998765544 46788888764 4676644 4455678888889999999753
No 349
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=39.77 E-value=85 Score=33.55 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhcccCCCCeEE--EEecCCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHHh
Q 007462 91 SGFALLTLVMEHEICKNIPVI--MMSSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHVWRR 153 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVI--mlSa~~d~~~~~~al~~GA~DyL~K-----P~~~~eL~~~L~~v~rr 153 (603)
-++++|+++.+. ..+||| ...+-...+.+..++++||+.+++- .-++.+....+...+..
T Consensus 190 ~~~elL~ei~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478899998764 368998 6666679999999999999998653 33666666555555544
No 350
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=39.55 E-value=1.7e+02 Score=29.86 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH---cCCcEEEeC-
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM---RGAADYLVK- 136 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MPgm---DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~---~GA~DyL~K- 136 (603)
..+.++.+.+.. --.|+++|+..-++ -.+++++++.+. ..+|||.--+..+.+.+.+++. .||++.++-
T Consensus 148 ~~~~~~~l~~~G-~~~iiv~~~~~~g~~~G~d~~~i~~i~~~---~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igr 223 (241)
T PRK14024 148 LWEVLERLDSAG-CSRYVVTDVTKDGTLTGPNLELLREVCAR---TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGK 223 (241)
T ss_pred HHHHHHHHHhcC-CCEEEEEeecCCCCccCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeH
Confidence 345555555433 12488888855432 137888888764 3789998777888888888764 499998754
Q ss_pred -----CCCHHHHHHH
Q 007462 137 -----PVRRNELRNL 146 (603)
Q Consensus 137 -----P~~~~eL~~~ 146 (603)
+++.++++..
T Consensus 224 a~~~g~~~~~~~~~~ 238 (241)
T PRK14024 224 ALYAGAFTLPEALAV 238 (241)
T ss_pred HHHcCCCCHHHHHHH
Confidence 6777766544
No 351
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=39.53 E-value=1.2e+02 Score=30.82 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=49.4
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..++++.++... -.+|++|+.--| +.|++ .|... .+++|||.--+-.+.+.+.++...|+++.|+-
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d---~l~~~--~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg 211 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE---EIERF--WGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIG 211 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH---HHHHh--cCCCCEEEECCCCCHHHHHHHHHCCCCEEEEE
Confidence 4556666665442 369999998877 46877 33222 14789999989999999999999999998753
No 352
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=39.50 E-value=2.9e+02 Score=28.93 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=58.3
Q ss_pred EEEEEecCHHHHHHHHHHH----HhCCC---EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 33 RVLLVEADDSTRQIVTALL----RKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL----~~~Gy---~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
-|||.|++-...-.+...+ +..+. -.+.+.+.++|.+.++. .+|+|.+|-.- .+.++++.+.. .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~~-----~e~l~~~~~~~-~ 224 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNMS-----PEELREAVALL-K 224 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCcC-----HHHHHHHHHHc-C
Confidence 6788887755442222222 23342 23558899999998864 38999999432 46666654422 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
.++||++ ++--..+.+......|++.+-
T Consensus 225 ~~ipi~A-iGGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 225 GRVLLEA-SGGITLENIRAYAETGVDYIS 252 (268)
T ss_pred CCCcEEE-ECCCCHHHHHHHHHcCCCEEE
Confidence 2577554 445578888889999998764
No 353
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=39.41 E-value=2.9e+02 Score=25.96 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=46.4
Q ss_pred HhhhcCCCEEEEEecCHHHH---HHHHHHHHhCCCEEEEEC---CHHHH----HHHHhcCCCCceEEEEeCCCCCC----
Q 007462 25 TFLQRMALRVLLVEADDSTR---QIVTALLRKSSYRVTAVP---DGLKA----WEVLKGRPRNIDLILTEVDLPSI---- 90 (603)
Q Consensus 25 ~fl~~m~lrVLLVDDD~~~r---~lL~~lL~~~Gy~V~~A~---dg~eA----Le~L~~~~~~pDLVLlDl~MPgm---- 90 (603)
..+..+..+|++|+-|.... ..+..+....|..+.... +..+. ++.+... .+|+||+|. |+.
T Consensus 22 ~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~viiDt--~g~~~~~ 97 (173)
T cd03115 22 LYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE--NFDVVIVDT--AGRLQID 97 (173)
T ss_pred HHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC--cccchhh
Confidence 33444567999999885432 234444455566655532 33332 2333332 489999997 443
Q ss_pred -CHHHHHHHHHhcccCCCCeEEEEecCC
Q 007462 91 -SGFALLTLVMEHEICKNIPVIMMSSQD 117 (603)
Q Consensus 91 -DGleLLr~Lr~~~~~~~IPVImlSa~~ 117 (603)
+.++.+..+... ..+...++++.+..
T Consensus 98 ~~~l~~l~~l~~~-~~~~~~~lVv~~~~ 124 (173)
T cd03115 98 ENLMEELKKIKRV-VKPDEVLLVVDAMT 124 (173)
T ss_pred HHHHHHHHHHHhh-cCCCeEEEEEECCC
Confidence 344555555432 12444555565543
No 354
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=39.41 E-value=1.1e+02 Score=31.76 Aligned_cols=85 Identities=11% Similarity=0.235 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHH
Q 007462 41 DSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVS 120 (603)
Q Consensus 41 ~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~ 120 (603)
......|.+..++.|....+..-..++++.|.+ +++-++=+.-.+..-+.||+.+.+ .+.|||+=|+-...+
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~----tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK----TGKPVILSTGMSTLE 126 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT----T-S-EEEE-TT--HH
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH----hCCcEEEECCCCCHH
Confidence 344556777788899988776667888888865 455555666677889999999965 367999999887666
Q ss_pred HHHHHH----HcCCcEE
Q 007462 121 TVYKCM----MRGAADY 133 (603)
Q Consensus 121 ~~~~al----~~GA~Dy 133 (603)
.+.+|+ ..|..++
T Consensus 127 EI~~Av~~~~~~~~~~l 143 (241)
T PF03102_consen 127 EIERAVEVLREAGNEDL 143 (241)
T ss_dssp HHHHHHHHHHHHCT--E
T ss_pred HHHHHHHHHHhcCCCCE
Confidence 655543 3444444
No 355
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=39.28 E-value=4.7e+02 Score=27.35 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=38.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC----CCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHH
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ----DSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVW 151 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~----~d~~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v~ 151 (603)
.|++|+.- + +..+++.+. ..+|||++... .+.....+.+..+-.++++.|-+ .+.|.+.|..++
T Consensus 253 ~d~~i~~~---g--~~~~~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll 322 (357)
T PRK00726 253 ADLVICRA---G--ASTVAELAA-----AGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELL 322 (357)
T ss_pred CCEEEECC---C--HHHHHHHHH-----hCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHH
Confidence 57887632 1 355566653 36799887531 22222233333334477777655 899999998876
Q ss_pred Hh
Q 007462 152 RR 153 (603)
Q Consensus 152 rr 153 (603)
..
T Consensus 323 ~~ 324 (357)
T PRK00726 323 SD 324 (357)
T ss_pred cC
Confidence 43
No 356
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=39.00 E-value=94 Score=31.83 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=45.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHhc-CCCCceEEEEeCCCCC-CCHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPS-ISGFALLTLV 99 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~~A~dg~eALe~L~~-~~~~pDLVLlDl~MPg-mDGleLLr~L 99 (603)
.-+|.-||-++......+..|++.|+. |..... -+|++.+.. ....||+||+|..=+. -.-++.+..+
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~l 155 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPL 155 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHH
Confidence 358999999999999999999999873 444331 344444443 2245999999986554 2344544444
No 357
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=38.88 E-value=1.5e+02 Score=30.54 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=58.9
Q ss_pred hhhcCCCEEEEEecC-HHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 26 FLQRMALRVLLVEAD-DSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 26 fl~~m~lrVLLVDDD-~~~r~lL~~lL~~~Gy~V~~---A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
++.+...+|=.|-.. ......|..-|.++||+|.. .++...|..++++....|-+++-|-.|++.+|++.
T Consensus 34 rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT------ 107 (262)
T KOG3040|consen 34 RLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT------ 107 (262)
T ss_pred HHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC------
Confidence 344445667666653 45566677778889998764 56778888999988888999999999999999752
Q ss_pred cccCCCCeEEEEec
Q 007462 102 HEICKNIPVIMMSS 115 (603)
Q Consensus 102 ~~~~~~IPVImlSa 115 (603)
..|+..||-+..
T Consensus 108 --s~pn~VViglap 119 (262)
T KOG3040|consen 108 --SDPNCVVIGLAP 119 (262)
T ss_pred --CCCCeEEEecCc
Confidence 236666665443
No 358
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=38.84 E-value=2.5e+02 Score=25.28 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=33.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCceEEEEeC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGR-PRNIDLILTEV 85 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~-~~~pDLVLlDl 85 (603)
|+++|.||-| +.+... ++-.|.++..+.+.+++.+.++.. ...+.||++.-
T Consensus 2 ~~~kIaVIGD-~dtv~G----FrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite 53 (104)
T PRK01395 2 TMYKIGVVGD-KDSILP----FKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITE 53 (104)
T ss_pred cceeEEEEEC-HHHHHH----HHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcH
Confidence 4578999999 444433 344588888887777776655431 23488888864
No 359
>PRK13695 putative NTPase; Provisional
Probab=38.77 E-value=2e+02 Score=27.36 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=41.1
Q ss_pred CceEEEEeC--CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH--cCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 77 NIDLILTEV--DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM--RGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 77 ~pDLVLlDl--~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~--~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
.+|+||+|- .+...+ ..+++.|.... ....|+|+++...........+. .+..=|-+.|-+.++|...|...+
T Consensus 96 ~~~~lllDE~~~~e~~~-~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKS-PKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhh-HHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 589999996 232333 23334443322 24578888887654333222222 223335567889998887776543
No 360
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=38.75 E-value=47 Score=38.28 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=46.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHhcCCCCceEEEEeC--CCCCCCH--HHHHHHHHhccc
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG---LKAWEVLKGRPRNIDLILTEV--DLPSISG--FALLTLVMEHEI 104 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg---~eALe~L~~~~~~pDLVLlDl--~MPgmDG--leLLr~Lr~~~~ 104 (603)
.+|||||.....-..|.++|+..|+++....+- ...++.+... .||.||+-= .-|.-.+ .++++.+.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~--~~~~IIlSpGPg~p~d~~~~~~i~~~~~---- 75 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATM--SNPVLMLSPGPGVPSEAGCMPELLTRLR---- 75 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhc--CcCEEEEcCCCCChhhCCCCHHHHHHHh----
Confidence 589999999999999999999999877665431 2224444332 266676632 2221111 23443331
Q ss_pred CCCCeEEEEe
Q 007462 105 CKNIPVIMMS 114 (603)
Q Consensus 105 ~~~IPVImlS 114 (603)
..+||+-+.
T Consensus 76 -~~iPILGIC 84 (531)
T PRK09522 76 -GKLPIIGIC 84 (531)
T ss_pred -cCCCEEEEc
Confidence 368988766
No 361
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.69 E-value=1.9e+02 Score=33.14 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=62.2
Q ss_pred CCCEEEEEecCHHH----HHHHHHHHHhCC--CEEEE--ECCHHHHHHHHhcCCCCceEEEE--------------eCCC
Q 007462 30 MALRVLLVEADDST----RQIVTALLRKSS--YRVTA--VPDGLKAWEVLKGRPRNIDLILT--------------EVDL 87 (603)
Q Consensus 30 m~lrVLLVDDD~~~----r~lL~~lL~~~G--y~V~~--A~dg~eALe~L~~~~~~pDLVLl--------------Dl~M 87 (603)
....+++||--+-. ...++.+=..++ ..|.. +.+.+.|..+++.. .|.|.+ ++..
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG---Ad~I~vg~g~Gs~c~tr~~~~~g~ 329 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG---ADFVKVGIGGGSICITREQKGIGR 329 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC---CCEEEECCCCCcCcccccccCCCc
Confidence 34667777633332 333444433343 34555 56778887777643 577744 3444
Q ss_pred CCCCHHHHHHHHH-hc--ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 88 PSISGFALLTLVM-EH--EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 88 PgmDGleLLr~Lr-~~--~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
|..+.+.-+.... .. .....+|||+-.+.-....+.+|+.+||+..++-
T Consensus 330 ~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 330 GQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence 4444433222221 10 1123489999999999999999999999988754
No 362
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.58 E-value=3.5e+02 Score=27.44 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=59.2
Q ss_pred HHHHHHhCCC-EEEEECCHHHHHHHHhcCCC-CceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 007462 47 VTALLRKSSY-RVTAVPDGLKAWEVLKGRPR-NIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (603)
Q Consensus 47 L~~lL~~~Gy-~V~~A~dg~eALe~L~~~~~-~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~ 124 (603)
+...|...+. -|+-..+.++|++.++.-.. .+++| ++.|-.-++++.++.|++. +++ .+|-.-...+.+.+..
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~--~p~-~~IGAGTVl~~~~a~~ 82 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKE--VPE-ALIGAGTVLNPEQLAQ 82 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHH--CCC-CEEEEeeccCHHHHHH
Confidence 3345555554 45557788888877653321 25544 4445555899999999864 244 2333334456788999
Q ss_pred HHHcCCcEEEeCCCCHHHHHHHH
Q 007462 125 CMMRGAADYLVKPVRRNELRNLW 147 (603)
Q Consensus 125 al~~GA~DyL~KP~~~~eL~~~L 147 (603)
++++||+ |++-|.-..++....
T Consensus 83 a~~aGA~-FivsP~~~~~vi~~a 104 (212)
T PRK05718 83 AIEAGAQ-FIVSPGLTPPLLKAA 104 (212)
T ss_pred HHHcCCC-EEECCCCCHHHHHHH
Confidence 9999995 666665555655443
No 363
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.52 E-value=1.6e+02 Score=32.16 Aligned_cols=81 Identities=23% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCEEEEEecCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH
Q 007462 31 ALRVLLVEADDST-----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (603)
Q Consensus 31 ~lrVLLVDDD~~~-----r~lL~~lL~~~Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL 96 (603)
..|+|||-|.... ...+...|+..|+++..+. +..++++.++... +|+||- +.|.+-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHH
Confidence 3699999886444 3567788888788765442 4556777777654 899873 4577777777
Q ss_pred HHHHhc---------------ccCCCCeEEEEecC
Q 007462 97 TLVMEH---------------EICKNIPVIMMSSQ 116 (603)
Q Consensus 97 r~Lr~~---------------~~~~~IPVImlSa~ 116 (603)
+.+.-. ...+.+|+|.+...
T Consensus 103 K~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 103 KAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 765321 01246898887543
No 364
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=38.36 E-value=1.8e+02 Score=30.73 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=49.3
Q ss_pred CEEEEEecCH----HHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEADD----STRQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD~----~~r~lL~~lL~~~Gy~V~~-------A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.|+-+|. .....++..|+..|.+|+. ..|....+..|+... ||+||+= ..+-+...++++++
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~--pd~v~~~--~~~~~~~~~~~~~~ 209 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAK--PDVVVST--VNGDSNVAFFKQLK 209 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhC--CCEEEEe--ccCCchHHHHHHHH
Confidence 4666665443 4556666778888988764 225555666666544 9999873 34556788999998
Q ss_pred hcccCCC-CeEEE
Q 007462 101 EHEICKN-IPVIM 112 (603)
Q Consensus 101 ~~~~~~~-IPVIm 112 (603)
+....+. +|++.
T Consensus 210 ~~G~~~~~~~~~~ 222 (348)
T cd06355 210 AAGITASKVPVLS 222 (348)
T ss_pred HcCCCccCCeeEE
Confidence 7664332 45553
No 365
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=38.27 E-value=4.4e+02 Score=26.64 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=63.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHh---CCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 30 MALRVLLVEADDSTRQIVTALLRK---SSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~---~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
...+++|+.+.+.... +...+.. .+-.|.. .-+..+..+++.. .|++++=....+.-|+.+++.+.
T Consensus 196 ~~~~l~i~G~~~~~~~-~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma---- 266 (335)
T cd03802 196 AGIPLKLAGPVSDPDY-FYREIAPELLDGPDIEYLGEVGGAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA---- 266 (335)
T ss_pred cCCeEEEEeCCCCHHH-HHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh----
Confidence 3567888887643222 2222221 1223333 3355666677754 57888755444556788888874
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
..+|||..-. .. ..+.+..|..+|+..+ .++|...|..+.
T Consensus 267 -~G~PvI~~~~-~~---~~e~i~~~~~g~l~~~--~~~l~~~l~~l~ 306 (335)
T cd03802 267 -CGTPVIAFRR-GA---VPEVVEDGVTGFLVDS--VEELAAAVARAD 306 (335)
T ss_pred -cCCCEEEeCC-CC---chhheeCCCcEEEeCC--HHHHHHHHHHHh
Confidence 2578885432 22 2245567788999988 888888887763
No 366
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=38.06 E-value=2.5e+02 Score=30.77 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=57.4
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEe-C---CC-CCCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 007462 46 IVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTE-V---DL-PSISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 46 lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlD-l---~M-PgmDGleLLr~Lr~~~~~~~IPVImlSa~~d 118 (603)
.|..+-...+..|+. +.+.++|..+++. ..|.|++. . .+ .+...++.|.+|+..- ..++|||+-.+...
T Consensus 212 ~l~~lr~~~~~PvivKgv~~~~dA~~a~~~---G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~-~~~i~vi~dGGIr~ 287 (351)
T cd04737 212 DIEFIAKISGLPVIVKGIQSPEDADVAINA---GADGIWVSNHGGRQLDGGPASFDSLPEIAEAV-NHRVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHhCCcEEEecCCCHHHHHHHHHc---CCCEEEEeCCCCccCCCCchHHHHHHHHHHHh-CCCCeEEEECCCCC
Confidence 343443344444433 4677888777664 27877773 1 11 1223467778886532 24699999999999
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 007462 119 VSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 119 ~~~~~~al~~GA~DyL~K 136 (603)
...+.+++.+||+..++-
T Consensus 288 g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 288 GEHVFKALASGADAVAVG 305 (351)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999988754
No 367
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=38.05 E-value=1.7e+02 Score=29.68 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=51.1
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgm-DG--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+..+.++.+.... --.+|++|+.--|+ .| +++++++++.. ++|||.--+-.+.+.+.++...|+++.|+
T Consensus 148 ~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 5667777666553 24699999976653 33 57788886543 78999998999999999999999999886
No 368
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.03 E-value=2.6e+02 Score=29.97 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=61.2
Q ss_pred EEEEE--ecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HhcCCCCceEEEEeCCCCCCC
Q 007462 33 RVLLV--EADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEV----------------LKGRPRNIDLILTEVDLPSIS 91 (603)
Q Consensus 33 rVLLV--DDD~~---~r~lL~~lL~~~Gy~V~~A~dg~eALe~----------------L~~~~~~pDLVLlDl~MPgmD 91 (603)
+|.|| .+.+. ....|..+|...|+++....+..+.+.. .......+|+||+ -|.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 56666 22332 3455666677889888765433222210 0000112677776 2778
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
| .+|+..+... ..++||+-+. .|-.+||.- +..+++...|..+++..
T Consensus 79 G-TlL~aar~~~-~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 79 G-TVLSAARQLA-PCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred H-HHHHHHHHhc-CCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCC
Confidence 8 5666665432 2578988664 377788875 67889999999887654
No 369
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=37.96 E-value=2e+02 Score=30.22 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCCceEEEEeCCC---CCCC----HHHHHHHHHhcccCCCCeEEEEecCC-C-----HHHHHHHHHcCCc
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDL---PSIS----GFALLTLVMEHEICKNIPVIMMSSQD-S-----VSTVYKCMMRGAA 131 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~M---PgmD----GleLLr~Lr~~~~~~~IPVImlSa~~-d-----~~~~~~al~~GA~ 131 (603)
..|.+.+... .+.+++|+.... ++-. -+..+..+++. .++||++=+++. . ......|+.+||+
T Consensus 151 ~~A~e~i~~~-Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~---~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~ 226 (266)
T PRK13398 151 LYAAEYIMSE-GNENVVLCERGIRTFETYTRNTLDLAAVAVIKEL---SHLPIIVDPSHATGRRELVIPMAKAAIAAGAD 226 (266)
T ss_pred HHHHHHHHhc-CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhc---cCCCEEEeCCCcccchhhHHHHHHHHHHcCCC
Confidence 3455666644 347999998733 2222 23344444432 368988855553 3 5677788999998
Q ss_pred EE-EeCCCC
Q 007462 132 DY-LVKPVR 139 (603)
Q Consensus 132 Dy-L~KP~~ 139 (603)
+. |-|-++
T Consensus 227 Gl~iE~H~~ 235 (266)
T PRK13398 227 GLMIEVHPE 235 (266)
T ss_pred EEEEeccCC
Confidence 65 455433
No 370
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=37.91 E-value=4.7e+02 Score=27.10 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=32.1
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
|....+..++... ||+|++ ..++.+...+++++++....++++++...
T Consensus 174 d~~~~i~~l~~~~--pd~v~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 221 (333)
T cd06359 174 DFSAELAQIRAAK--PDAVFV--FLPGGMGVNFVKQYRQAGLKKDIPLYSPG 221 (333)
T ss_pred chHHHHHHHHhCC--CCEEEE--EccCccHHHHHHHHHHcCcccCCeeeccC
Confidence 5565666666544 899987 34556788888988876655566665433
No 371
>PLN02316 synthase/transferase
Probab=37.81 E-value=4.2e+02 Score=33.32 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=65.5
Q ss_pred CCEEEEEec--CHHHHHHHHHHHHhCCC----EEEEE--CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 007462 31 ALRVLLVEA--DDSTRQIVTALLRKSSY----RVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (603)
Q Consensus 31 ~lrVLLVDD--D~~~r~lL~~lL~~~Gy----~V~~A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~ 102 (603)
..+++||.+ ++.....|..+...++. .|... -+...+-.++.. .|++|+=- +-.--|+-.|+.++.
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaa----ADiflmPS-~~EP~GLvqLEAMa~- 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAG----ADFILVPS-IFEPCGLTQLTAMRY- 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHh----CcEEEeCC-cccCccHHHHHHHHc-
Confidence 578888886 34445666666665432 34332 233222234432 68888642 334558888888753
Q ss_pred ccCCCCeEEEEecCCC-HHHHHHH---------HHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 103 EICKNIPVIMMSSQDS-VSTVYKC---------MMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d-~~~~~~a---------l~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
.+|+|+ +.... .+.+... ...+..+||..|.+...|...|.+++..
T Consensus 943 ----GtppVv-s~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 943 ----GSIPVV-RKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred ----CCCeEE-EcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 345554 33333 2332221 1125789999999999999998888653
No 372
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.73 E-value=4.2e+02 Score=27.66 Aligned_cols=99 Identities=10% Similarity=0.114 Sum_probs=61.1
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHhcCCCCceEEEE-eC-CCCC------CCHHHHHHHHHh
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTA-V-P-DGLKAWEVLKGRPRNIDLILT-EV-DLPS------ISGFALLTLVME 101 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A-~-dg~eALe~L~~~~~~pDLVLl-Dl-~MPg------mDGleLLr~Lr~ 101 (603)
=|||.|=-......+...+++.|+..+. + . +..+=++.+.... .+.|-+ .+ .--| .+..++++++++
T Consensus 120 GviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 120 GLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKA 197 (258)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHh
Confidence 3555555555666677777888886544 3 2 3344444444433 343322 21 1111 235568888876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP 137 (603)
. .++||++=.+-.+.+.+.+++.. |++.++--
T Consensus 198 ~---~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 198 H---TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred c---CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 4 37999987777888888888875 99998763
No 373
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=37.66 E-value=4e+02 Score=30.80 Aligned_cols=111 Identities=19% Similarity=0.287 Sum_probs=64.8
Q ss_pred ccchHHhhhcCCCEEEEE--ecCHHHHHHHH---HHHH-hCCCEEEEECCHHHHHH----------------HHhcCCCC
Q 007462 20 IAKWETFLQRMALRVLLV--EADDSTRQIVT---ALLR-KSSYRVTAVPDGLKAWE----------------VLKGRPRN 77 (603)
Q Consensus 20 ~v~we~fl~~m~lrVLLV--DDD~~~r~lL~---~lL~-~~Gy~V~~A~dg~eALe----------------~L~~~~~~ 77 (603)
...|+.- +.+|+|| -+.+....++. .+|. ..|+.|.........+. .+......
T Consensus 187 ~l~w~~~----p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (508)
T PLN02935 187 SLKWESD----PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTK 262 (508)
T ss_pred EeeecCC----CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccC
Confidence 3456543 4578888 34455554444 4455 46787776443222110 00000113
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+|+||+ -|.|| .+|+..+... ...+||+-+ ..|-.+|| -++.++++...|..++++.
T Consensus 263 ~DlVIs----iGGDG-TlL~Aar~~~-~~~iPILGI-------------N~G~LGFL-t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVIT----LGGDG-TVLWAASMFK-GPVPPVVPF-------------SMGSLGFM-TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEE----ECCcH-HHHHHHHHhc-cCCCcEEEE-------------eCCCccee-cccCHHHHHHHHHHHHcCC
Confidence 677776 37788 3555555322 246888754 36888898 5789999999999987653
No 374
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=37.53 E-value=4.5e+02 Score=27.38 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 43 TRQIVTALLRKSSYRVTAV---------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A---------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
....+...|+..|.+|+.. .+....+..++... +|+||+... ..++..+++++++...
T Consensus 151 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~--~dvvi~~~~--~~~~~~~~~~a~~~g~ 217 (350)
T cd06366 151 GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKD--SRVIVVHFS--PDLARRVFCEAYKLGM 217 (350)
T ss_pred hHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCC--CeEEEEECC--hHHHHHHHHHHHHcCC
Confidence 3456666777778776541 23445556665443 898887653 4477888888876554
No 375
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=37.37 E-value=3.2e+02 Score=31.59 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCEEEE--ECCHHHHHHHHhc---CCCCceEEEEeC----CCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 44 RQIVTALLRKSSYRVTA--VPDGLKAWEVLKG---RPRNIDLILTEV----DLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~---~~~~pDLVLlDl----~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
...+-..|+..|+.+.. +..|...+..|.. -+ ||.|=+|- .++. + -.+++.|.......++.| +..
T Consensus 541 ~~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~--~d~iKid~~~~~~~~~-~-~~~~~~i~~~a~~l~~~v-iae 615 (660)
T PRK11829 541 ALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLP--IHMIKLDKSFVKNLPE-D-DAIARIISCVSDVLKVRV-MAE 615 (660)
T ss_pred HHHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCC--CcEEEECHHHHhcccC-C-HHHHHHHHHHHHHcCCeE-EEe
Confidence 33455557888998665 6788888888876 55 99999984 2332 2 223333322211124444 457
Q ss_pred cCCCHHHHHHHHHcCCcE----EEeCCCCHHHHHHHH
Q 007462 115 SQDSVSTVYKCMMRGAAD----YLVKPVRRNELRNLW 147 (603)
Q Consensus 115 a~~d~~~~~~al~~GA~D----yL~KP~~~~eL~~~L 147 (603)
+.++.+....+.++|++. |+.||....++...+
T Consensus 616 gVEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 616 GVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred cCCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 788888888999999854 478999998876544
No 376
>PRK01362 putative translaldolase; Provisional
Probab=37.37 E-value=1.8e+02 Score=29.51 Aligned_cols=91 Identities=18% Similarity=0.084 Sum_probs=56.5
Q ss_pred HHHHHHHHHH--HHhCCCEE--EEECCHHHHHHHHhcCCCCceEEE---EeCCCCCCCHHHHHHHHHhcccCCC-CeEEE
Q 007462 41 DSTRQIVTAL--LRKSSYRV--TAVPDGLKAWEVLKGRPRNIDLIL---TEVDLPSISGFALLTLVMEHEICKN-IPVIM 112 (603)
Q Consensus 41 ~~~r~lL~~l--L~~~Gy~V--~~A~dg~eALe~L~~~~~~pDLVL---lDl~MPgmDGleLLr~Lr~~~~~~~-IPVIm 112 (603)
|.+...++.+ |...|+.| +.+-+..+|+...+.. .+.|= --+.-.+.||+++++++.+.-...+ -.-|+
T Consensus 85 P~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkil 161 (214)
T PRK01362 85 PMTPEGLKAVKALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEII 161 (214)
T ss_pred CCCHHHHHHHHHHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 3333444433 56667754 4467888888777654 33322 1223347899999998865432112 24556
Q ss_pred EecCCCHHHHHHHHHcCCcEEE
Q 007462 113 MSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL 134 (603)
..+.-+...+.++..+|++-+-
T Consensus 162 aAS~r~~~~v~~~~~~G~d~iT 183 (214)
T PRK01362 162 AASVRHPMHVLEAALAGADIAT 183 (214)
T ss_pred EeecCCHHHHHHHHHcCCCEEe
Confidence 6677788999999999998443
No 377
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=37.23 E-value=2.4e+02 Score=31.07 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=57.9
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEE-eCCCCCCC----HHHHHHHHHhcccCCCCeEEEEecCCC
Q 007462 46 IVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILT-EVDLPSIS----GFALLTLVMEHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 46 lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLl-Dl~MPgmD----GleLLr~Lr~~~~~~~IPVImlSa~~d 118 (603)
.|+.+-+.+...++ .+.+.++|..+++.. +|.|++ ...-...+ .+++|.+|+..- ++|||+-.+.-.
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G---~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~---~~~vi~dGGIr~ 300 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELG---ADGVILSNHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRR 300 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHCC---cCEEEECCCCcCCCcCCccHHHHHHHHHHHh---CCeEEEeCCCCC
Confidence 34444444443333 366889998888743 676653 33333344 488888887532 489999889999
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 007462 119 VSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 119 ~~~~~~al~~GA~DyL~K 136 (603)
...+.+|+.+||+..++-
T Consensus 301 g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 301 GSDIVKALALGANAVLLG 318 (361)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999988653
No 378
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=37.12 E-value=1.6e+02 Score=28.54 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHH----hCCCEEEEECCHHHHHHHHhcC--CCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 41 DSTRQIVTALLR----KSSYRVTAVPDGLKAWEVLKGR--PRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 41 ~~~r~lL~~lL~----~~Gy~V~~A~dg~eALe~L~~~--~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
...|..|...|. ..|++|+.+-||...-...... ...+.||++. .+.+.-+++.++-.....+.-.|+|+|
T Consensus 25 ~~aR~~Li~~L~~y~~~~~~~v~VVFDa~~~~~~~~~~~~~~gi~Vvft~---~~~tAD~~Ie~~v~~~~~~~~~v~VVT 101 (166)
T PF05991_consen 25 EAARERLIEMLSEYAQFSGYEVIVVFDAYKVPGGSEEREEYGGIEVVFTK---EGETADDYIERLVRELKNRPRQVTVVT 101 (166)
T ss_pred HHHHHHHHHHHHHHhcccCCEEEEEEeCCcCCCCCceeeeeCceEEEECC---CCCCHHHHHHHHHHHhccCCCeEEEEe
Confidence 455556666664 3478888877764332211111 1247888875 356788888887544332246788888
Q ss_pred cCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 115 SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+ |......++..|| +.++.++|...|...-.
T Consensus 102 S--D~~iq~~~~~~GA-----~~iss~ef~~~l~~~~~ 132 (166)
T PF05991_consen 102 S--DREIQRAARGRGA-----KRISSEEFLRELKAAKR 132 (166)
T ss_pred C--CHHHHHHHhhCCC-----EEEcHHHHHHHHHHHHH
Confidence 7 5555556788898 56788999888876644
No 379
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=37.12 E-value=4.8e+02 Score=26.77 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=48.7
Q ss_pred EEEEE-ecCHHH---HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 33 RVLLV-EADDST---RQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 33 rVLLV-DDD~~~---r~lL~~lL~~~Gy~V~~-------A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
+|.+| .|+... ...++..|++.|++++. ..|....+..++... ||+|++= ...-+...++++++.
T Consensus 136 ~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~--pd~v~~~--~~~~~~~~~~~~~~~ 211 (336)
T cd06360 136 KVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDV--PDAVFVF--FAGGDAIKFVKQYDA 211 (336)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcC--CCEEEEe--cccccHHHHHHHHHH
Confidence 45444 444433 34455667777877643 246667777777654 8998863 445667888888877
Q ss_pred cccCCCCeEEEEec
Q 007462 102 HEICKNIPVIMMSS 115 (603)
Q Consensus 102 ~~~~~~IPVImlSa 115 (603)
.....++|++-.+.
T Consensus 212 ~g~~~~~~~~~~~~ 225 (336)
T cd06360 212 AGLKAKIPLIGSGF 225 (336)
T ss_pred cCCccCCeEEeccc
Confidence 65444566664433
No 380
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=37.00 E-value=80 Score=30.26 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=41.8
Q ss_pred hccCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHhc
Q 007462 14 MNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK---SSYRVTAVPDGLKAWEVLKG 73 (603)
Q Consensus 14 ~~~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~---~Gy~V~~A~dg~eALe~L~~ 73 (603)
+++.+-+..|-.++.-- +|+||||+-..-..++.+|+- .|+.+... +.++|.+.+..
T Consensus 11 LIHGQV~~~W~~~~~~~--~IiVvdD~~A~D~~~k~~l~ma~P~gvk~~i~-sv~~a~~~l~~ 70 (151)
T PF03830_consen 11 LIHGQVATAWVKKLNAN--RIIVVDDEVANDPFQKMILKMAAPAGVKLSIF-SVEEAIEKLKK 70 (151)
T ss_dssp CSCTTHHHHHHHHHTTS--EEEEE-HHHHHSHHHHHHHHHTSHTTSEEEEE--HHHHHHHHCG
T ss_pred eeeeeeeEEEhhhcccC--EEEEECHHHhcCHHHHHHHHHhhcCCCceEEE-EHHHHHHHHHh
Confidence 55777788999987655 899999988888888888864 36766544 67788888864
No 381
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=36.95 E-value=2.3e+02 Score=29.32 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
++++++|++.- ..++|||...+..+.+.+.+++.+||+...
T Consensus 230 ~~~v~~i~~~~-~~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARL-QLDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhc-CCCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 56677776532 127999999999999999999999987654
No 382
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=36.86 E-value=41 Score=33.01 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=26.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~ 62 (603)
|||||.....-..+.++|++.|+.+..+.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~ 30 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVR 30 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEE
Confidence 89999999999999999999999876654
No 383
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=36.74 E-value=3.9e+02 Score=27.95 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=64.3
Q ss_pred CEEEEEec---CHHHHHHHHHHHHhCCC---EEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 007462 32 LRVLLVEA---DDSTRQIVTALLRKSSY---RVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (603)
Q Consensus 32 lrVLLVDD---D~~~r~lL~~lL~~~Gy---~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~ 102 (603)
.+++|+-+ .+.....++..+...+. .|+.. -+..+..+++.. .|++|+=.. .+.-|+-+++.+.
T Consensus 230 ~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a-- 302 (388)
T TIGR02149 230 VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA-- 302 (388)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH--
Confidence 45555533 33444556666554433 13332 245666777753 688776322 2344677777764
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCH------HHHHHHHHHHHH
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR------NELRNLWQHVWR 152 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~------~eL~~~L~~v~r 152 (603)
..+|||+.- ... ..+.+..|..+++++|-+. ++|...|..++.
T Consensus 303 ---~G~PvI~s~-~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 ---CGTPVVASA-TGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred ---cCCCEEEeC-CCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 367987633 222 3345667888999999888 888888877654
No 384
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=36.71 E-value=2.7e+02 Score=30.05 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=44.2
Q ss_pred CCEEEEEecCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH
Q 007462 31 ALRVLLVEADDSTR-----QIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (603)
Q Consensus 31 ~lrVLLVDDD~~~r-----~lL~~lL~~~Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL 96 (603)
..|+|||-|..... ..+...|...|+++..+. +..++++.+++.. +|+||- ..|.+-+++.
T Consensus 25 g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~a 99 (357)
T cd08181 25 GKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAA 99 (357)
T ss_pred CCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHH
Confidence 36999999876522 557788888787655432 3556777777654 898873 5677777777
Q ss_pred HHH
Q 007462 97 TLV 99 (603)
Q Consensus 97 r~L 99 (603)
+.+
T Consensus 100 K~i 102 (357)
T cd08181 100 KAI 102 (357)
T ss_pred HHH
Confidence 755
No 385
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=36.62 E-value=1.1e+02 Score=30.94 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=50.2
Q ss_pred CCHHHHHHHHhcCCCCce-EEEEeCCCCC---CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 62 PDGLKAWEVLKGRPRNID-LILTEVDLPS---ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 62 ~dg~eALe~L~~~~~~pD-LVLlDl~MPg---mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+..+..+.+.... +| |+++|+.--+ ..-++++++|++. ..+|||+--+-.+.+.+.+++..|++..++-
T Consensus 27 ~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 27 GDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 36666666666543 44 7777876322 1236788888764 3689999989999999999999998877654
No 386
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=36.46 E-value=4.7e+02 Score=26.53 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=66.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHhcCCCCceEEEEeCCC-CCCCHHHHHHHHHhcccC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL-PSISGFALLTLVMEHEIC 105 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~M-PgmDGleLLr~Lr~~~~~ 105 (603)
..+++|+.+.+. ...+..+++..+. .|.. .-+..+..+++.. .|++|+-... ...-|+.+++.+..
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~~---- 288 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMAF---- 288 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHHc----
Confidence 467888877653 3455666644443 3443 3345556666653 5777753211 23346778887742
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
.+|||+.-.....+.+.. .|..+++..|-+.+++.+.|..++..
T Consensus 289 -g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 289 -GKPVISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred -CCCEEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 578885332222222222 48889999999999999999988753
No 387
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.39 E-value=3.2e+02 Score=28.45 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 42 STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 42 ~~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
.....++..++..|++|+.. .+....+..++... +|+||+.. ...+...+++.+++... ..+++...
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~--~d~vi~~~--~~~~~~~~~~~~~~~g~--~~~~~~~~ 225 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSK--PDLIVISA--LAADGGNLVRQLRELGY--NGLIVGGN 225 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEECC--cchhHHHHHHHHHHcCC--CCceeccc
Confidence 44566777788889887642 35667777777654 89999875 34566788888877543 34554333
Q ss_pred cCCCHH
Q 007462 115 SQDSVS 120 (603)
Q Consensus 115 a~~d~~ 120 (603)
...+..
T Consensus 226 ~~~~~~ 231 (344)
T cd06348 226 GFNTPN 231 (344)
T ss_pred cccCHH
Confidence 333333
No 388
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=36.38 E-value=1.5e+02 Score=32.40 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+.+..+++.. ..+|+|++|+--.... -++.++.|+.. +++++ |+--.....+.+..++.+||+...+-
T Consensus 110 er~~~L~~a~-~~~d~iviD~AhGhs~~~i~~ik~ir~~--~p~~~-viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 110 EKMTSILEAV-PQLKFICLDVANGYSEHFVEFVKLVREA--FPEHT-IMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCcHHHHHHHHHHHHhh--CCCCe-EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3444444432 2489999998765544 47888888764 34433 33334678899999999999998755
No 389
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=36.32 E-value=4.3e+02 Score=26.01 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=66.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+++|+.+.+. ...+..++...+. .|......++..+++.. .|++|+-....+ -|+-+++.+. ..+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~e~-~~~~~~Ea~a-----~G~ 277 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRFEG-FPMVLLEAMA-----FGL 277 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccccc-cCHHHHHHHH-----cCC
Confidence 457777776543 3344455555543 34443334555666653 588887655432 3677777774 367
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
|||+........ .....|..+++.++.+.++|...|..++.
T Consensus 278 Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 278 PVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred CEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 887543323322 23455668899999999999999998854
No 390
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=36.27 E-value=1.1e+02 Score=29.09 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHhcCCCCceEEEEeCCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVP----DGLKAWEVLKGRPRNIDLILTEVDLPS 89 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~----dg~eALe~L~~~~~~pDLVLlDl~MPg 89 (603)
..+|+||.......+-|..+|...|..|..+. +..+ .++. -|||++-..-|.
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~---~v~~----ADIVvsAtg~~~ 83 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS---KVHD----ADVVVVGSPKPE 83 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH---HHhh----CCEEEEecCCCC
Confidence 46999999999999999999999999999887 4443 3332 699999987775
No 391
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=36.22 E-value=3.2e+02 Score=30.09 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=47.7
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHHhcccCCCCeEEEE-ecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 78 IDLILTEVDLPSISGFA-LLTLVMEHEICKNIPVIMM-SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 78 pDLVLlDl~MPgmDGle-LLr~Lr~~~~~~~IPVIml-Sa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.+.+|++..-+..==+| ++..+.. ....||.. ....+...+..+++.|+++.|.+|-++.+++.+...+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~----~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQG----SSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcC----CCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 56677766555433333 3333321 23445544 344578888899999999999999999999988776644
No 392
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=36.14 E-value=4.1e+02 Score=29.43 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=64.5
Q ss_pred CCEEEEEecC-HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEAD-DSTRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD-~~~r~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+++|+.+- +.....+..+....+..+.. .-+..++..++.. .|++|+=-. -.--|+-+++.+.. .
T Consensus 320 ~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aDv~l~pS~-~E~~gl~~lEAma~-----G 389 (473)
T TIGR02095 320 GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAG----ADFILMPSR-FEPCGLTQLYAMRY-----G 389 (473)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHh----CCEEEeCCC-cCCcHHHHHHHHHC-----C
Confidence 3678888765 34555666666555444433 2244444455543 588876322 23446777776642 4
Q ss_pred CeEEEEecCCCHHHHHHHHHcC------CcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRG------AADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~G------A~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|+|+ +...... +.+..| ..+|+..|.+.++|...|.+++.
T Consensus 390 ~pvI~-s~~gg~~---e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 390 TVPIV-RRTGGLA---DTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred CCeEE-ccCCCcc---ceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 56664 3332222 222334 78999999999999999988765
No 393
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=35.92 E-value=1.7e+02 Score=31.41 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=40.1
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 78 IDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 78 pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+|+|.+|..-.. ..-+++++.|++.. +++|||+ ....+.+.+..++++||+...+
T Consensus 107 v~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 107 VDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 899999985432 23578888887642 4577765 4456788889999999987765
No 394
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=35.86 E-value=2.8e+02 Score=29.00 Aligned_cols=93 Identities=10% Similarity=0.048 Sum_probs=59.1
Q ss_pred EEEEEecCHHHHHHHHHHH----HhCCC---EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 33 RVLLVEADDSTRQIVTALL----RKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL----~~~Gy---~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
.|||.|++-...-.+...+ +..+. -.+.+.+.++|++.++.. +|.|.+|-.-| +.++++.+.- .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~g---aDyI~ld~~~~-----e~lk~~v~~~-~ 220 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAG---ADIIMLDNMKP-----EEIKEAVQLL-K 220 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcC---CCEEEECCCCH-----HHHHHHHHHh-c
Confidence 6788888754433222222 23442 235588999999998643 79999986544 4455543321 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
..+||+ .++--..+.+......||+.+-+
T Consensus 221 ~~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 221 GRVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 236755 45556788888999999987754
No 395
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=35.86 E-value=4.3e+02 Score=26.21 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=62.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
.++++|+.+.+. ...+..+++..+. .|.. .-+..+..+++.. .|++|+-... +.-|.-+++.+. .
T Consensus 233 ~~~l~i~g~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~i~~~~~-~~~~~~~~Ea~~-----~ 301 (377)
T cd03798 233 DVHLVIVGDGPL-REALEALAAELGLEDRVTFLGAVPHEEVPAYYAA----ADVFVLPSLR-EGFGLVLLEAMA-----C 301 (377)
T ss_pred CeEEEEEcCCcc-hHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHh----cCeeecchhh-ccCChHHHHHHh-----c
Confidence 355555554432 3345555543332 2222 2345566666653 4676653322 334566677663 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
.+|||+. .... ..+.+..+..+++.++-+.++|...|..++..
T Consensus 302 G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 302 GLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred CCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 5788753 3333 23445677778999999999999999888654
No 396
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.79 E-value=2.3e+02 Score=32.02 Aligned_cols=97 Identities=19% Similarity=0.120 Sum_probs=59.3
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCC----HHHHH---HHHHhcccCCCCeEE
Q 007462 39 ADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS----GFALL---TLVMEHEICKNIPVI 111 (603)
Q Consensus 39 DD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD----GleLL---r~Lr~~~~~~~IPVI 111 (603)
=+...-+.|...|...||+++. . ....||||+..--.--. -+..+ +.+++. .++++||
T Consensus 35 ~N~~dse~~~~~l~~~G~~~~~-----------~--~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~--~p~~~iv 99 (467)
T PRK14329 35 MNFADSEIVASILQMAGYNTTE-----------N--LEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKK--NPKLIVG 99 (467)
T ss_pred CcHHHHHHHHHHHHHCcCEECC-----------C--cccCCEEEEeCcceechHHHHHHHHHHHHHHHHhh--CCCcEEE
Confidence 4666778899999999998764 1 12379999986544322 23333 333332 3555554
Q ss_pred EEecCCCHHHHHHHHHc-CCcEEEeCCCCHHHHHHHHHHHH
Q 007462 112 MMSSQDSVSTVYKCMMR-GAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~-GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+++.-....-.+.+.. +..|+++.+-....|..++..+.
T Consensus 100 -vgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 100 -VLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred -EECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 4544322222344444 44899999999999888887653
No 397
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.67 E-value=5.2e+02 Score=28.47 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=45.9
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCC-------CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDL-------PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~M-------PgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+..+..+.+.+.. .|+|.++... +..+-..+.+.+++ .++|||. ....+.+.+.++++.||+.+++
T Consensus 142 ~~~e~a~~l~eaG--vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAG--VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666666544 8999997532 22255666666654 2688876 4566788889999999999876
Q ss_pred C
Q 007462 136 K 136 (603)
Q Consensus 136 K 136 (603)
-
T Consensus 215 G 215 (368)
T PRK08649 215 G 215 (368)
T ss_pred C
Confidence 4
No 398
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=35.37 E-value=1e+02 Score=27.52 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=22.3
Q ss_pred HHHHHHHhc-CCCCceEEEE--eCCC---CCCCHHHHHHHHHhcccCCCCeEE
Q 007462 65 LKAWEVLKG-RPRNIDLILT--EVDL---PSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 65 ~eALe~L~~-~~~~pDLVLl--Dl~M---PgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.++.+++.+ .. +|+||. +=.. ...||+.+.+.-.. .+||++
T Consensus 57 ~~i~~~i~~~g~--idlVIn~~~~~~~~~~~~dg~~iRR~A~~----~~Ip~~ 103 (112)
T cd00532 57 PTVDAAIAEKGK--FDVVINLRDPRRDRCTDEDGTALLRLARL----YKIPVT 103 (112)
T ss_pred cHHHHHHhCCCC--EEEEEEcCCCCcccccCCChHHHHHHHHH----cCCCEE
Confidence 446677765 44 787776 3122 34557655554332 256765
No 399
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=35.04 E-value=6.2e+02 Score=27.47 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=60.7
Q ss_pred EEEEEec----CHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCC-----------CCC--H
Q 007462 33 RVLLVEA----DDSTRQIVTALLRKSS-YRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLP-----------SIS--G 92 (603)
Q Consensus 33 rVLLVDD----D~~~r~lL~~lL~~~G-y~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MP-----------gmD--G 92 (603)
.++++|- ...+.+.++.+-+... ..|+. +.+.+.|..+++.. .|.|.+-+.-. +.- +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG---ad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG---ADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC---cCEEEECCCCCccccceeeeccCCCchH
Confidence 5555554 1344444444444432 32332 45777777777643 57776442111 111 3
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+..++.. .++|||.-.+-.....+.+|+.+||+..++-
T Consensus 187 l~ai~ev~~a---~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHh---cCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 5566666542 3699999999999999999999999998765
No 400
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=34.96 E-value=74 Score=30.75 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=40.8
Q ss_pred hccCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHhc
Q 007462 14 MNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK---SSYRVTAVPDGLKAWEVLKG 73 (603)
Q Consensus 14 ~~~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~---~Gy~V~~A~dg~eALe~L~~ 73 (603)
+++.+=+..|-+++.-- +|+||||....-...+.+|.- .|..+.. -+.++|++.+..
T Consensus 13 LIHGQV~~~W~~~~~~~--~IvVvdD~~A~D~~~k~~l~ma~P~gvk~~i-~sv~~a~~~l~~ 72 (157)
T PRK11425 13 LIHGQVGVQWVGFAGAN--LVLVANDEVAEDPVQQNLMEMVLAEGIAVRF-WTLQKVIDNIHR 72 (157)
T ss_pred chhHHhhhhhhcccCCC--EEEEEcchhcCCHHHHHHHHhhCCCCCeEEE-EEHHHHHHHHhc
Confidence 55677788998887554 899999988877777777763 3555443 356777777764
No 401
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.38 E-value=2.8e+02 Score=29.51 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=54.0
Q ss_pred EEEEEec--CH---HHHHHHHHHHHhCCCEEEEECCHHHHH--HH-HhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 33 RVLLVEA--DD---STRQIVTALLRKSSYRVTAVPDGLKAW--EV-LKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 33 rVLLVDD--D~---~~r~lL~~lL~~~Gy~V~~A~dg~eAL--e~-L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
+|+||-. .+ .....+...|++.|+++.......+.. .. .......+|+||+= |.||. +++.++...
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~----GGDGT-~l~~~~~~~- 78 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVL----GGDGT-VLAAARHLA- 78 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEE----CCcHH-HHHHHHHhc-
Confidence 4777633 22 234455566778899876643322211 10 01111237888873 77873 444444321
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCC-HHHHHHHHHHHHHh
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR-RNELRNLWQHVWRR 153 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~-~~eL~~~L~~v~rr 153 (603)
..++||+.+.. -|-.+||.-... ..+ ...|+.+...
T Consensus 79 ~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g 115 (305)
T PRK02645 79 PHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQED 115 (305)
T ss_pred cCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcC
Confidence 24789887763 256788885421 223 5666666543
No 402
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=34.36 E-value=2.6e+02 Score=27.43 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=48.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC--CCEEEEEC------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS--SYRVTAVP------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~--Gy~V~~A~------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
..+|.++...+.+.+.+.+.|+.. |.+++... +.++.++.+.... +|||++-+.+|...-+ +.+.+
T Consensus 48 ~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~--~dil~VglG~PkQE~~--~~~~~ 121 (177)
T TIGR00696 48 KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG--AGIVFVGLGCPKQEIW--MRNHR 121 (177)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEEcCCcHhHHH--HHHhH
Confidence 479999999999999999999764 55665531 2233457777654 9999999999987743 34443
No 403
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.24 E-value=1.9e+02 Score=29.32 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=52.3
Q ss_pred HHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhccc--CCCCeEEEEe
Q 007462 47 VTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEI--CKNIPVIMMS 114 (603)
Q Consensus 47 L~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-------leLLr~Lr~~~~--~~~IPVImlS 114 (603)
+-..+++.|..+..+ .+..+.++.+-. ..|+|++=-.-|+..| ++-++++++... ..++||.+.
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~---~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd- 173 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIMD---KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID- 173 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE-
Confidence 334556777765544 345555554432 2687777666777666 344555554321 124666554
Q ss_pred cCCCHHHHHHHHHcCCcEEEeC
Q 007462 115 SQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~K 136 (603)
+--..+.+..+.++||+.+++-
T Consensus 174 GGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 174 GGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCCCHHHHHHHHHcCCCEEEEe
Confidence 4445888999999999988654
No 404
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=34.00 E-value=4e+02 Score=26.72 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=58.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCC----CHHHHHHHHHhcc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI----SGFALLTLVMEHE 103 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy---~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm----DGleLLr~Lr~~~ 103 (603)
..++.|+.+.+.. ..+..++...+. .+...-+.++..+++.. .|++|+=....+. -+..+++.+.
T Consensus 250 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~~~~~~~~~p~~~~Ea~~--- 321 (394)
T cd03794 250 DIRFLIVGDGPEK-EELKELAKALGLDNVTFLGRVPKEELPELLAA----ADVGLVPLKPGPAFEGVSPSKLFEYMA--- 321 (394)
T ss_pred CeEEEEeCCcccH-HHHHHHHHHcCCCcEEEeCCCChHHHHHHHHh----hCeeEEeccCcccccccCchHHHHHHH---
Confidence 4566666654432 233333332222 22222345566666653 5677654433322 1333566653
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
..+|||+.......+ .+..+-.+++..+-+.++|...|..++
T Consensus 322 --~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 322 --AGKPVLASVDGESAE----LVEEAGAGLVVPPGDPEALAAAILELL 363 (394)
T ss_pred --CCCcEEEecCCCchh----hhccCCcceEeCCCCHHHHHHHHHHHH
Confidence 357887654333222 233446778999999999999998886
No 405
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=33.96 E-value=2.2e+02 Score=27.53 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=47.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEE---------------EECCHHHHHHHH-h-cCCCCceEEEEeCCCCCCC-
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT---------------AVPDGLKAWEVL-K-GRPRNIDLILTEVDLPSIS- 91 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~---------------~A~dg~eALe~L-~-~~~~~pDLVLlDl~MPgmD- 91 (603)
+.+||||+.--..+...+...|+...+.+. ....+. ....+ . ....+||+||+|---- .|
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~-~Dp 109 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHF-TDP 109 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT---SH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEecccc-CCH
Confidence 568999999999999999999986654322 111122 22222 2 1124599999996322 33
Q ss_pred -HHHHHHHHHhcccCCCCeEEEEecC
Q 007462 92 -GFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 92 -GleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
-+.+.-.|+.........+|+||+.
T Consensus 110 ~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 110 TSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred HHHhhheeHHHhhhccCeeEEEEeCC
Confidence 3333334443333345689999875
No 406
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.89 E-value=4e+02 Score=27.96 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=47.8
Q ss_pred CEEEEEecCH----HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEADD----STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD~----~~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
.+|.||-++. .....+.+.|+..|++++.. .+....+..+.... +|+||+-. ...+...++++++
T Consensus 145 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~--~d~v~~~~--~~~~~~~~~~~~~ 220 (362)
T cd06343 145 AKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAG--ADVVVLAT--TPKFAAQAIRKAA 220 (362)
T ss_pred ceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcC--CCEEEEEc--CcHHHHHHHHHHH
Confidence 3555554433 33344555667778875531 24556667776554 99999853 4557888999998
Q ss_pred hcccCCCCeEEEEecCC
Q 007462 101 EHEICKNIPVIMMSSQD 117 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~ 117 (603)
+.... .++|+.+...
T Consensus 221 ~~g~~--~~~~~~~~~~ 235 (362)
T cd06343 221 ELGWK--PTFLLSSVSA 235 (362)
T ss_pred HcCCC--ceEEEEeccc
Confidence 76532 3455444433
No 407
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=33.88 E-value=6.4e+02 Score=27.73 Aligned_cols=101 Identities=13% Similarity=0.234 Sum_probs=64.6
Q ss_pred CCCEEEEEe----cCHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHhcCCCCceEEEEeCC--------------CC
Q 007462 30 MALRVLLVE----ADDSTRQIVTALLRKSS-YRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD--------------LP 88 (603)
Q Consensus 30 m~lrVLLVD----DD~~~r~lL~~lL~~~G-y~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~--------------MP 88 (603)
....+|+|| ....+...++.+=+..+ ..|+. +.+.+.|..+++.. .|.|.+-+. .|
T Consensus 119 agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aG---ad~vkVGiGpGsiCtTr~v~GvG~P 195 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAG---ADAVKVGIGPGSICTTREVTGVGVP 195 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT----SEEEESSSSSTTBHHHHHHSBSCT
T ss_pred cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcC---CCEEEEeccCCcccccccccccCCc
Confidence 456889998 33444445554444444 45554 77999999988854 799998865 33
Q ss_pred CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 89 gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
....+--+...+.. ..+|||.=-+-.....+.+|+.+||+..++-
T Consensus 196 Q~tAv~~~a~~a~~---~~v~iIADGGi~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 196 QLTAVYECAEAARD---YGVPIIADGGIRTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp HHHHHHHHHHHHHC---TTSEEEEESS-SSHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHhhh---ccCceeecCCcCcccceeeeeeecccceeec
Confidence 33332222333222 3799998777888999999999999999875
No 408
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=33.84 E-value=3.4e+02 Score=25.75 Aligned_cols=32 Identities=3% Similarity=-0.152 Sum_probs=16.9
Q ss_pred ecCHHHHHHHHHHHHhC--CCEEEEECCHHHHHH
Q 007462 38 EADDSTRQIVTALLRKS--SYRVTAVPDGLKAWE 69 (603)
Q Consensus 38 DDD~~~r~lL~~lL~~~--Gy~V~~A~dg~eALe 69 (603)
|.+......+...|... ||.++....-.+.|+
T Consensus 13 d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~ 46 (142)
T PRK05234 13 DHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQ 46 (142)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHH
Confidence 33434444455555666 888765544444433
No 409
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=33.81 E-value=2.3e+02 Score=27.71 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
...+.+.+++.||.+.... +.. ++++.+... .+|.||+....+. ..++++.+.+ .++|+|++..
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~--~~~~~~~~~~----~~ipvV~~~~ 87 (266)
T cd06282 18 VQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQ--RVDGLILTVADAA--TSPALDLLDA----ERVPYVLAYN 87 (266)
T ss_pred HHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCC--chHHHHHHhh----CCCCEEEEec
Confidence 3455566677899877653 223 344555443 3898888643332 2345666643 3689988854
No 410
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.81 E-value=2.2e+02 Score=32.55 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=45.1
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+..+.++.|.... .|+|++|..-- +..-++++++|++. +++++||. -.....+.+..++++||+.+-
T Consensus 227 ~~~~~a~~Lv~aG--vd~i~~D~a~~~~~~~~~~i~~ik~~--~p~~~v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 227 DVAAKARALLEAG--VDVLVVDTAHGHQEKMLEALRAVRAL--DPGVPIVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hHHHHHHHHHHhC--CCEEEEeccCCccHHHHHHHHHHHHH--CCCCeEEe-eccCCHHHHHHHHHcCCCEEE
Confidence 3344444444433 89999997443 55667888888764 36666553 245678888899999998764
No 411
>PRK04457 spermidine synthase; Provisional
Probab=33.81 E-value=3.6e+02 Score=27.92 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=45.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCC--CEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCC-----CCHHHHHHHHHhc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSS--YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-----ISGFALLTLVMEH 102 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~G--y~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-----mDGleLLr~Lr~~ 102 (603)
..+|..||=|+.+....+..+...+ -++. ...|+.+.+.... ..+|+||+|..-+. +.-.++++.++..
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~---~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR---HSTDVILVDGFDGEGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC---CCCCEEEEeCCCCCCCccccCcHHHHHHHHHh
Confidence 4689999999999999999876432 2333 3467776665332 35999999963221 1235677776553
No 412
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=33.54 E-value=1e+02 Score=30.56 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=43.3
Q ss_pred EEEEEecC---------HHHHHHHHHHHH-hCCCEEEEECCHHHHH-HHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHH
Q 007462 33 RVLLVEAD---------DSTRQIVTALLR-KSSYRVTAVPDGLKAW-EVLKGRPRNIDLILTEVDLPS-ISGFALLTLVM 100 (603)
Q Consensus 33 rVLLVDDD---------~~~r~lL~~lL~-~~Gy~V~~A~dg~eAL-e~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr 100 (603)
|||||... +.....|..+|+ ..+|+|....+....- +.|+ .+|+||+....+. ++- +..+.|+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~----~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLK----GYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHC----T-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhc----CCCEEEEECCCCCcCCH-HHHHHHH
Confidence 57777766 367888999998 7789998877633221 2343 3899999877753 332 2223332
Q ss_pred hcccCCCCeEEEEe
Q 007462 101 EHEICKNIPVIMMS 114 (603)
Q Consensus 101 ~~~~~~~IPVImlS 114 (603)
.- .....++|++=
T Consensus 76 ~~-v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DY-VENGGGLVGLH 88 (217)
T ss_dssp HH-HHTT-EEEEEG
T ss_pred HH-HHcCCCEEEEc
Confidence 21 11356787774
No 413
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=33.43 E-value=1.2e+02 Score=33.52 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=57.0
Q ss_pred ccchHHhhhcCC-CEEEEEecCHH----HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCC
Q 007462 20 IAKWETFLQRMA-LRVLLVEADDS----TRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDL 87 (603)
Q Consensus 20 ~v~we~fl~~m~-lrVLLVDDD~~----~r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~M 87 (603)
.++| .+.+-. .|+.+|..|-. .-.+++++|...|-+|+. + ++....++.++... ||+||.-+
T Consensus 124 l~~~--~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~~--Pd~V~stl-- 197 (363)
T PF13433_consen 124 LIDY--LLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAAK--PDFVFSTL-- 197 (363)
T ss_dssp HHHH--HHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHHT---SEEEEE---
T ss_pred HHHH--HHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhhC--CCEEEEeC--
Confidence 4455 344445 79999999864 445677777778887764 2 35566667777655 99999865
Q ss_pred CCCCHHHHHHHHHhcccCCC-CeEEEEe
Q 007462 88 PSISGFALLTLVMEHEICKN-IPVIMMS 114 (603)
Q Consensus 88 PgmDGleLLr~Lr~~~~~~~-IPVImlS 114 (603)
-|-+-..++++++.....+. +||+-++
T Consensus 198 vG~s~~aF~r~~~~aG~~~~~~Pi~S~~ 225 (363)
T PF13433_consen 198 VGDSNVAFYRAYAAAGLDPERIPIASLS 225 (363)
T ss_dssp -TTCHHHHHHHHHHHH-SSS---EEESS
T ss_pred cCCcHHHHHHHHHHcCCCcccCeEEEEe
Confidence 57788999999987766554 7877544
No 414
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.25 E-value=5e+02 Score=27.62 Aligned_cols=68 Identities=16% Similarity=-0.054 Sum_probs=46.7
Q ss_pred EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 58 V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+.+.+.++|.+.++.. +|+|++|=+ +--++-+.+.... ...+ |..|+--..+.+.+....|+|-+-+
T Consensus 198 eVEv~tleea~ea~~~g---aDiI~LDn~----s~e~l~~av~~~~--~~~~-leaSGGI~~~ni~~yA~tGVD~Is~ 265 (281)
T PRK06106 198 EVEVDTLDQLEEALELG---VDAVLLDNM----TPDTLREAVAIVA--GRAI-TEASGRITPETAPAIAASGVDLISV 265 (281)
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEeCCC----CHHHHHHHHHHhC--CCce-EEEECCCCHHHHHHHHhcCCCEEEe
Confidence 45689999999999753 899999943 2223333332111 2333 7888888999999999999876543
No 415
>PRK10551 phage resistance protein; Provisional
Probab=33.02 E-value=3.7e+02 Score=30.77 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=66.0
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCC----CCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 47 VTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD----LPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 47 L~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~----MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
+-..|+..|+.+.. +.+|...+..|.... +|.|=+|-. +.... .-.+++.|......-++. |+..+.++.
T Consensus 402 ~l~~Lr~~G~~ialDDFGtg~ssl~~L~~l~--vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~-vVAEGVEt~ 478 (518)
T PRK10551 402 LFAWLHSQGIEIAIDDFGTGHSALIYLERFT--LDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNML-TVAEGVETP 478 (518)
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCE-EEEEeCCcH
Confidence 33557888998765 678888888888755 999999942 22211 233455543322222344 345778888
Q ss_pred HHHHHHHHcCCc---EE-EeCCCCHHHHHHHHH
Q 007462 120 STVYKCMMRGAA---DY-LVKPVRRNELRNLWQ 148 (603)
Q Consensus 120 ~~~~~al~~GA~---Dy-L~KP~~~~eL~~~L~ 148 (603)
+....+.+.|++ +| +.||...++|...++
T Consensus 479 ~q~~~L~~~Gv~~~QGy~f~kP~~~~~~~~~l~ 511 (518)
T PRK10551 479 EQARWLRERGVNFLQGYWISRPLPLEDFVRWLK 511 (518)
T ss_pred HHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHh
Confidence 888889999974 44 589999999886553
No 416
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=32.97 E-value=5.7e+02 Score=28.05 Aligned_cols=91 Identities=19% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeC-CCC--CCCHHHHHHHHHhc----cc-CCCCeEEEE
Q 007462 43 TRQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEV-DLP--SISGFALLTLVMEH----EI-CKNIPVIMM 113 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl-~MP--gmDGleLLr~Lr~~----~~-~~~IPVIml 113 (603)
....|..+-..+|+++ +.+.+.+|+-..+.... .+||=++- ++- ..| ++...+|... .. ..++.+|--
T Consensus 218 ~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~g--a~iIGINNRdL~Tf~vD-l~~t~~L~~~~~~~~i~~~~~~~VsE 294 (338)
T PLN02460 218 DIKYMLKICKSLGMAALIEVHDEREMDRVLGIEG--VELIGINNRSLETFEVD-ISNTKKLLEGERGEQIREKGIIVVGE 294 (338)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCcceEC-HHHHHHHhhhccccccCCCCeEEEEC
Confidence 3445555556789985 46999999988886312 56665432 222 223 3444444331 11 124445555
Q ss_pred ecCCCHHHHHHHHHcCCcEEEeC
Q 007462 114 SSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (603)
|+-...+.+..+...|++.+|+-
T Consensus 295 SGI~t~~Dv~~l~~~GadAvLVG 317 (338)
T PLN02460 295 SGLFTPDDVAYVQNAGVKAVLVG 317 (338)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEC
Confidence 67789999999999999999974
No 417
>PRK00654 glgA glycogen synthase; Provisional
Probab=32.94 E-value=7.2e+02 Score=27.59 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=65.4
Q ss_pred CCEEEEEecC-HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEAD-DSTRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD-~~~r~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+++||.+- +.....++.+.+..+-.+.. .-+...+-.++.. .|++|+=- .-+.-|+-+++.+.. .
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~----aDv~v~PS-~~E~~gl~~lEAma~-----G 380 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG----ADMFLMPS-RFEPCGLTQLYALRY-----G 380 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh----CCEEEeCC-CCCCchHHHHHHHHC-----C
Confidence 5788888764 34566677777666544432 2233333344542 58887742 234557777777642 4
Q ss_pred CeEEEEecCCCHHHHHHHHHcC------CcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRG------AADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~G------A~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|+|+ +...... +.+..| .++|+..|-+.++|...|.+++.
T Consensus 381 ~p~V~-~~~gG~~---e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 381 TLPIV-RRTGGLA---DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred CCEEE-eCCCCcc---ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 56665 3332222 122334 78999999999999999988764
No 418
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=32.92 E-value=4.4e+02 Score=28.19 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=63.0
Q ss_pred EEecCHHHHHHHHHHHHhCCCEEEE------EC---CHHHHHHHHhcCCCCceEEEEeCCC-C----CCCHHHHHHHHHh
Q 007462 36 LVEADDSTRQIVTALLRKSSYRVTA------VP---DGLKAWEVLKGRPRNIDLILTEVDL-P----SISGFALLTLVME 101 (603)
Q Consensus 36 LVDDD~~~r~lL~~lL~~~Gy~V~~------A~---dg~eALe~L~~~~~~pDLVLlDl~M-P----gmDGleLLr~Lr~ 101 (603)
++.|-....++++.+-...++.|.. -. +..+..+.+++.. .|.|.+.-.. + +...++++++|++
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G--~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCG--IQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhC--CCEEEEecCccccccCCCcChHHHHHHHH
Confidence 4455566666666665555543332 11 2334444555443 6766554321 2 2233788888876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHH-cCCcEEEe------CCCCHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLV------KPVRRNEL 143 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~-~GA~DyL~------KP~~~~eL 143 (603)
. .++|||..-.-.+.+.+.++++ .|++..++ .|+-..++
T Consensus 192 ~---~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~ 237 (321)
T PRK10415 192 K---VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 (321)
T ss_pred h---cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHH
Confidence 4 3699999888889999999997 58888764 46644444
No 419
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=32.85 E-value=2.6e+02 Score=31.14 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCEEEE---EC------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 44 RQIVTALLRKSSYRVTA---VP------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~---A~------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
.+.+.+.++..|..|+. +. +....+..|... ..+|+||+... ..++..+++++++.... .++|.-.
T Consensus 191 ~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~-~~a~vVvl~~~--~~~~~~ll~~a~~~g~~--~~wigs~ 265 (458)
T cd06375 191 IEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQK-PNARVVVLFTR--SEDARELLAAAKRLNAS--FTWVASD 265 (458)
T ss_pred HHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhcc-CCCEEEEEecC--hHHHHHHHHHHHHcCCc--EEEEEec
Confidence 34455555666766543 21 112233333322 24888888654 34577788887665432 3333322
Q ss_pred cCCCHHHHHH---HHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 115 SQDSVSTVYK---CMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 115 a~~d~~~~~~---al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
+......... ..-.|+.+|..+-.....+..-++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~G~i~~~~~~~~i~~f~~yl~~l 304 (458)
T cd06375 266 GWGAQESIVKGSEDVAEGAITIELASHPIPDFDRYFQSL 304 (458)
T ss_pred cccccchhhhccchhhceEEEEEeccccchhHHHHHHhC
Confidence 3222222112 22357778888777777776655543
No 420
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=32.80 E-value=5.2e+02 Score=27.21 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHH----HHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 45 QIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF----ALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGl----eLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
..|.+.-..+|+++. .+.|.+|+-..++.. ..|| .++--+...+ +....|... ...+..+|.-|+-...
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~g---a~iI--GINnRdL~tf~vdl~~t~~la~~-~p~~~~~IsESGI~~~ 219 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKLG---AKII--GINNRDLTTLEVDLETTEKLAPL-IPKDVILISESGISTP 219 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhCC---CCEE--EEeCCCcchheecHHHHHHHHhh-CCCCcEEEecCCCCCH
Confidence 344444467899854 589999998888732 3444 3333333332 333444322 2244667777788899
Q ss_pred HHHHHHHHcCCcEEEeC
Q 007462 120 STVYKCMMRGAADYLVK 136 (603)
Q Consensus 120 ~~~~~al~~GA~DyL~K 136 (603)
+.+.+....||++||+-
T Consensus 220 ~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 220 EDVRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHHHHHcCCCEEEec
Confidence 99999999999999975
No 421
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=32.79 E-value=93 Score=29.25 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCCCeEE--EEecCCCHHHHHHHHHcCCcEEEeCCCCH
Q 007462 105 CKNIPVI--MMSSQDSVSTVYKCMMRGAADYLVKPVRR 140 (603)
Q Consensus 105 ~~~IPVI--mlSa~~d~~~~~~al~~GA~DyL~KP~~~ 140 (603)
.+++.|| +.|+.-+.+.+.+|+..|||+.|+---..
T Consensus 27 p~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~ 64 (132)
T COG1908 27 PPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKI 64 (132)
T ss_pred CCceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccc
Confidence 3556665 77899999999999999999999875443
No 422
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.71 E-value=2.4e+02 Score=30.87 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=44.3
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAV---------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 32 lrVLLVDDD~~----~r~lL~~lL~~~Gy~V~~A---------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
-+||||-|... ....+...|+..|..+..+ ++..++.+.+++.. +|+||- ..|.+-+++.+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHH
Confidence 59999988643 3446777788778765443 24567777777654 999883 457777887777
Q ss_pred HH
Q 007462 99 VM 100 (603)
Q Consensus 99 Lr 100 (603)
+.
T Consensus 107 ia 108 (383)
T PRK09860 107 IA 108 (383)
T ss_pred HH
Confidence 64
No 423
>PRK01581 speE spermidine synthase; Validated
Probab=32.62 E-value=2.2e+02 Score=31.51 Aligned_cols=69 Identities=25% Similarity=0.250 Sum_probs=42.9
Q ss_pred CCEEEEEecCHHHHHHHHHH--HH---hC---CCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCC------CHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTAL--LR---KS---SYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI------SGFAL 95 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~l--L~---~~---Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgm------DGleL 95 (603)
..+|.+||=|+.+.+..+.. |. .. +-++.. +.|+.+-+... ...||+||+|+.-|.. -..++
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---~~~YDVIIvDl~DP~~~~~~~LyT~EF 250 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---SSLYDVIIIDFPDPATELLSTLYTSEL 250 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---CCCccEEEEcCCCccccchhhhhHHHH
Confidence 36999999999998888862 21 11 223433 56777655433 2359999999755432 12456
Q ss_pred HHHHHhc
Q 007462 96 LTLVMEH 102 (603)
Q Consensus 96 Lr~Lr~~ 102 (603)
++.++..
T Consensus 251 y~~~~~~ 257 (374)
T PRK01581 251 FARIATF 257 (374)
T ss_pred HHHHHHh
Confidence 6666543
No 424
>PRK14967 putative methyltransferase; Provisional
Probab=32.42 E-value=4.7e+02 Score=25.95 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=33.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl 85 (603)
.+|..||-++......+..+...+..+.. ..+..+ .+.. ..+|+||++.
T Consensus 60 ~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~np 109 (223)
T PRK14967 60 GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSNP 109 (223)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEECC
Confidence 48999999999888888887776665433 234333 2333 2499999983
No 425
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.37 E-value=2.6e+02 Score=30.38 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=42.5
Q ss_pred CEEEEEecCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 32 LRVLLVEADDST----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 32 lrVLLVDDD~~~----r~lL~~lL~~~Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
.+||||-|.... ...+...|...|+++..+. +..++++.+++.. +|+||- ..|.+-+++.+.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~d~IIa---iGGGS~~D~aK~ 101 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENG--CDAILA---VGGGSVIDCAKA 101 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHHH
Confidence 599999886543 2446667777777665442 3557788887654 898873 457677777766
Q ss_pred HH
Q 007462 99 VM 100 (603)
Q Consensus 99 Lr 100 (603)
+.
T Consensus 102 ia 103 (374)
T cd08189 102 IA 103 (374)
T ss_pred HH
Confidence 53
No 426
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.31 E-value=4.6e+02 Score=25.84 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=54.7
Q ss_pred cCHHHHHHHHHHHHhCCCEEEE-E---C----CHHHHHHHHhcCCCCceEEEEeCC----CC-CCCHHHHHHHHHhcccC
Q 007462 39 ADDSTRQIVTALLRKSSYRVTA-V---P----DGLKAWEVLKGRPRNIDLILTEVD----LP-SISGFALLTLVMEHEIC 105 (603)
Q Consensus 39 DD~~~r~lL~~lL~~~Gy~V~~-A---~----dg~eALe~L~~~~~~pDLVLlDl~----MP-gmDGleLLr~Lr~~~~~ 105 (603)
+-....+.++.+-+..++.+.. + . +..+.++.+.... +|.|.+.-. ++ +.-.++.++.|++.
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~G--vd~i~v~~~~~~~~~~~~~~~~~~~~i~~~--- 181 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAG--ASALTVHGRTREQRYSGPADWDYIAEIKEA--- 181 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhC--CCEEEECCCCHHHcCCCCCCHHHHHHHHhC---
Confidence 4444555666665555532221 1 1 2333445555433 677755332 12 22347888888763
Q ss_pred CCCeEEEEecCCCHHHHHHHHHc-CCcEEEe
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMR-GAADYLV 135 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~-GA~DyL~ 135 (603)
.++|||..-+..+.+.+.+++.. ||+.+++
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 47999988888899999999998 6776543
No 427
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.15 E-value=1.4e+02 Score=29.43 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 43 TRQIVTALLRKSSYRVTAVPD---G---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~d---g---~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
....+...+++.||.+..... . .++++.+.... +|.||+....+. . ..++.+.. .++|||++-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--~dgiii~~~~~~--~-~~~~~~~~----~~ipvV~i~~ 86 (270)
T cd06296 17 VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARR--TDGVILVTPELT--S-AQRAALRR----TGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcC--CCEEEEecCCCC--h-HHHHHHhc----CCCCEEEEec
Confidence 344556667788998776432 2 24556665543 898877543332 2 34566643 4689998754
No 428
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=32.10 E-value=3.5e+02 Score=30.19 Aligned_cols=91 Identities=13% Similarity=0.219 Sum_probs=51.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCH-HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSS-YRVTAVPDG-LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~G-y~V~~A~dg-~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++|||+.- -.+...+...|.+.| ++|+.|.-- +.+-++..........+.+|+. |.-.+.+.|... ++-
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~----d~~al~~li~~~----d~V 72 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA----DVDALVALIKDF----DLV 72 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc----ChHHHHHHHhcC----CEE
Confidence 57888888 455555555555544 788877644 3333332322123667777752 222333444322 445
Q ss_pred EEEEecCCCHHHHHHHHHcCCc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAA 131 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~ 131 (603)
|.++-.+-....+..|++.|++
T Consensus 73 In~~p~~~~~~i~ka~i~~gv~ 94 (389)
T COG1748 73 INAAPPFVDLTILKACIKTGVD 94 (389)
T ss_pred EEeCCchhhHHHHHHHHHhCCC
Confidence 5555556677777788888874
No 429
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=32.09 E-value=1.6e+02 Score=35.44 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=49.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEe--CCCCC-CCHHHHHHHHHhcccCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE--VDLPS-ISGFALLTLVMEHEICK 106 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlD--l~MPg-mDGleLLr~Lr~~~~~~ 106 (603)
...+|||||-.......|..+|+..|+++..+.... ..+.+... .||.||+= ..-|. .+-.++++.+.. .
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~--~~DgLILsgGPGsp~d~~~~~~I~~~~~----~ 587 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDER--RPDLVVLSPGPGRPADFDVAGTIDAALA----R 587 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhhc--CCCEEEEcCCCCCchhcccHHHHHHHHH----C
Confidence 457999999998889999999999999887664331 11222222 38887771 11121 122445554432 4
Q ss_pred CCeEEEEe
Q 007462 107 NIPVIMMS 114 (603)
Q Consensus 107 ~IPVImlS 114 (603)
++||+-+.
T Consensus 588 ~iPvLGIC 595 (717)
T TIGR01815 588 GLPVFGVC 595 (717)
T ss_pred CCCEEEEC
Confidence 68998776
No 430
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=32.03 E-value=1.9e+02 Score=30.65 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=49.4
Q ss_pred ECCHHHHHHHHhcCCCCceEEEEeC--------CCCCCCHHHHHHHHHhcccCCCCeEEEEec-CCCHHHHHHHHHcCCc
Q 007462 61 VPDGLKAWEVLKGRPRNIDLILTEV--------DLPSISGFALLTLVMEHEICKNIPVIMMSS-QDSVSTVYKCMMRGAA 131 (603)
Q Consensus 61 A~dg~eALe~L~~~~~~pDLVLlDl--------~MPgmDGleLLr~Lr~~~~~~~IPVImlSa-~~d~~~~~~al~~GA~ 131 (603)
..+.++|.+.++... +|.+-+.+ .-|.. ++++|++|++.- .+|+++.-+ -.+.+.+.++++.|++
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~ 225 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIA 225 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 458899998887444 78877542 11344 489999997642 689988863 3467778899999998
Q ss_pred EEEe
Q 007462 132 DYLV 135 (603)
Q Consensus 132 DyL~ 135 (603)
.+=+
T Consensus 226 kiNv 229 (282)
T TIGR01859 226 KINI 229 (282)
T ss_pred EEEE
Confidence 8754
No 431
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=31.95 E-value=5.8e+02 Score=27.83 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=66.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-EEEE---CCHHHHHHHHhcCCCCceEEEEeC-CCCCC-CHHHHHHHHHhccc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAV---PDGLKAWEVLKGRPRNIDLILTEV-DLPSI-SGFALLTLVMEHEI 104 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A---~dg~eALe~L~~~~~~pDLVLlDl-~MPgm-DGleLLr~Lr~~~~ 104 (603)
.++++||.|-+. +..+.++++..|.. ++.. -..++..+++.. .|+.++=. ...+. =+.-+++.+.
T Consensus 269 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~~~~~~~~~~~p~~~~Eama---- 339 (415)
T cd03816 269 KLLCIITGKGPL-KEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVSLHTSSSGLDLPMKVVDMFG---- 339 (415)
T ss_pred CEEEEEEecCcc-HHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEEccccccccCCcHHHHHHHH----
Confidence 368888887653 66777787777763 4433 245666677754 57776411 11111 1445666653
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
..+|||.. .... ..+.+..|..++++. +.++|.+.|..++..
T Consensus 340 -~G~PVI~s-~~~~---~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 340 -CGLPVCAL-DFKC---IDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred -cCCCEEEe-CCCC---HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 36799873 3332 335567788999984 899999998887653
No 432
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=31.95 E-value=4.9e+02 Score=26.81 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=73.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCE----EEEECCHHHHHHHHhcCCCCceEEEE----eCCCCCCCH-HHHHHHHHhc
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYR----VTAVPDGLKAWEVLKGRPRNIDLILT----EVDLPSISG-FALLTLVMEH 102 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~----V~~A~dg~eALe~L~~~~~~pDLVLl----Dl~MPgmDG-leLLr~Lr~~ 102 (603)
+.|+=+-++..+...++..= +.|.+ ...+.+..++.+.|++.. +|++++ |.++-|.+- ++.|..+++.
T Consensus 84 ~tV~g~A~~~TI~~~i~~A~-~~~~~v~iDl~~~~~~~~~~~~l~~~g--vd~~~~H~g~D~q~~G~~~~~~~l~~ik~~ 160 (217)
T COG0269 84 VTVLGAADDATIKKAIKVAK-EYGKEVQIDLIGVWDPEQRAKWLKELG--VDQVILHRGRDAQAAGKSWGEDDLEKIKKL 160 (217)
T ss_pred EEEEecCCHHHHHHHHHHHH-HcCCeEEEEeecCCCHHHHHHHHHHhC--CCEEEEEecccHhhcCCCccHHHHHHHHHh
Confidence 57777777777777666654 44443 344678999999998644 899996 777777774 7888888754
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
. ...--|.+++--..+.+..+...|++-|++-
T Consensus 161 ~--~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvG 192 (217)
T COG0269 161 S--DLGAKVAVAGGITPEDIPLFKGIGADIVIVG 192 (217)
T ss_pred h--ccCceEEEecCCCHHHHHHHhcCCCCEEEEC
Confidence 3 2335667788889999999999999888754
No 433
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=31.86 E-value=4.9e+02 Score=26.57 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
.++++||.+-+. ...+...++..+. .|....-..+..+++.. .|++|+--.. +.-|+-+++.+. ..+
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-E~~~~~~lEAma-----~G~ 291 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLY-EGLPLVLIEAQA-----SGL 291 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccc-cCCCHHHHHHHH-----hCC
Confidence 468888877554 3345555555443 24333324445556643 5777764332 334778888874 367
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|||+.. ...... .+.. ...|+..+-++++|..+|..++...
T Consensus 292 PvI~s~-~~~~~~---~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 292 PCILSD-TITKEV---DLTD-LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred CEEEEc-CCchhh---hhcc-CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 988643 333322 2233 3467777778899999999887654
No 434
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=31.84 E-value=2.2e+02 Score=28.68 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhcccCCCCe-EEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 89 SISGFALLTLVMEHEICKNIP-VIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 89 gmDGleLLr~Lr~~~~~~~IP-VImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+.||+++++.+.+.-...+++ -|+..+.-....+.+++.+|++-+-+-
T Consensus 137 g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 137 GGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLP 185 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeC
Confidence 679999999886543222323 445566678888889999999766543
No 435
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=31.66 E-value=4e+02 Score=28.00 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=46.7
Q ss_pred hCCCEEEEECCH-----HHHH---H-HHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 007462 53 KSSYRVTAVPDG-----LKAW---E-VLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 53 ~~Gy~V~~A~dg-----~eAL---e-~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
+.+++|..+.+| +++- . ++++ +.||+||+=---|..-|-.-.|++-.. .++|.|+++........
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~~- 102 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILKA---AGIPCIVIGDAPGKKVK- 102 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEEEEcCCCccchH-
Confidence 346766665533 3332 2 3333 358988875544555555555665433 47899999976555444
Q ss_pred HHHHcCCcEEEeCC
Q 007462 124 KCMMRGAADYLVKP 137 (603)
Q Consensus 124 ~al~~GA~DyL~KP 137 (603)
.+++..-.+||+=+
T Consensus 103 d~l~~~g~GYIivk 116 (277)
T PRK00994 103 DAMEEQGLGYIIVK 116 (277)
T ss_pred HHHHhcCCcEEEEe
Confidence 66766666776544
No 436
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=31.63 E-value=5.4e+02 Score=26.78 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 44 RQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
...++..++..|++|+.. .+....+..|.... +|+||+.. ...++..+++++++... ..+++.++..
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--~d~v~~~~--~~~~~~~~~~~~~~~g~--~~~~~~~~~~ 234 (344)
T cd06345 161 DAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAAD--PDVIIAGF--SGNVGVLFTQQWAEQKV--PIPTIGISVE 234 (344)
T ss_pred HHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcC--CCEEEEee--cCchHHHHHHHHHHcCC--CCceEEecCC
Confidence 344556667778876542 35666777776654 89999865 34467788888876543 4566655443
No 437
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.33 E-value=3e+02 Score=30.84 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=62.5
Q ss_pred hhcCCCEEEEEe----cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeC----CCCCCCHHHHHHH
Q 007462 27 LQRMALRVLLVE----ADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV----DLPSISGFALLTL 98 (603)
Q Consensus 27 l~~m~lrVLLVD----DD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl----~MPgmDGleLLr~ 98 (603)
|++|..+|.|+- =+...-+.|...|...||+++.- . ..-||||+.- ..........++.
T Consensus 2 ~~~~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~--~-----------~~ADviiiNTC~v~~~A~~k~~~~i~~ 68 (445)
T PRK14340 2 MPRMGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAAS--E-----------EDADIVLLNTCAVRENAVERIGHYLQH 68 (445)
T ss_pred CCCCCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCC--c-----------ccCCEEEEEeeeeeccHHHHHHHHHHH
Confidence 566766666653 35666778888898899987641 1 1258998875 2222333444443
Q ss_pred HHhcc-cCCCCeEEEEecCCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHH
Q 007462 99 VMEHE-ICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 99 Lr~~~-~~~~IPVImlSa~~d~~~~~~al~-~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
|+..+ ..+..+ |++++.-....-.+.++ .-..|+++-+-....+..++...
T Consensus 69 ~~~~k~~~~~~~-ivv~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~ 121 (445)
T PRK14340 69 LKGAKRRRKGLL-VGVLGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADA 121 (445)
T ss_pred HHHHhhcCCCCE-EEEeCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHH
Confidence 43221 223444 45555432222233444 34567787888888877777654
No 438
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=31.22 E-value=2.1e+02 Score=29.38 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=44.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC--C-----CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH-----HHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS--S-----YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG-----FALLTL 98 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~--G-----y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-----leLLr~ 98 (603)
..+|-+||=|+.+.+..+..+... + .++ ...||..-++...+. .+|+||+|+.-|...+ .++++.
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~~~~--~yDvIi~D~~dp~~~~~~l~t~ef~~~ 176 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKETQEE--KYDVIIVDLTDPDGPAPNLFTREFYQL 176 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTSSST---EEEEEEESSSTTSCGGGGSSHHHHHH
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhccCC--cccEEEEeCCCCCCCcccccCHHHHHH
Confidence 468999999999999999988642 1 233 355665555443321 5999999998876443 355555
Q ss_pred HHh
Q 007462 99 VME 101 (603)
Q Consensus 99 Lr~ 101 (603)
+++
T Consensus 177 ~~~ 179 (246)
T PF01564_consen 177 CKR 179 (246)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 439
>PRK09134 short chain dehydrogenase; Provisional
Probab=31.06 E-value=2.7e+02 Score=27.67 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=51.0
Q ss_pred hHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHH
Q 007462 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~--dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr 97 (603)
|..++..+..+|||......+-..+...|.+.|+.|+.+. +.. .+...+......+.++.+|+.-+. +-.+++.
T Consensus 1 ~~~~~~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~ 79 (258)
T PRK09134 1 SPPMSMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEA-EVRALVA 79 (258)
T ss_pred CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH-HHHHHHH
Confidence 3445556677899999999999999998888899886643 221 222333222222455666754322 1223444
Q ss_pred HHHhcccCCCCeEEEEec
Q 007462 98 LVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 98 ~Lr~~~~~~~IPVImlSa 115 (603)
.+... ...+-+|+..+
T Consensus 80 ~~~~~--~~~iD~vi~~a 95 (258)
T PRK09134 80 RASAA--LGPITLLVNNA 95 (258)
T ss_pred HHHHH--cCCCCEEEECC
Confidence 44332 13455665554
No 440
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=30.98 E-value=2.2e+02 Score=31.05 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=42.9
Q ss_pred CEEEEEecCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHH
Q 007462 32 LRVLLVEADDSTR-----QIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (603)
Q Consensus 32 lrVLLVDDD~~~r-----~lL~~lL~~~Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr 97 (603)
-|+|||-|..... ..+...|+..|+++..+. +..++++.+++.. +|+||- ..|.+-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--AQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 5899999876543 567888888887665543 3446677777644 898873 45666666666
Q ss_pred HH
Q 007462 98 LV 99 (603)
Q Consensus 98 ~L 99 (603)
.+
T Consensus 102 ~i 103 (383)
T cd08186 102 SA 103 (383)
T ss_pred HH
Confidence 55
No 441
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=30.88 E-value=46 Score=35.58 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=41.1
Q ss_pred chHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHH-HHHhcCCCCceEEEEe
Q 007462 22 KWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYR-VTA-VPDGLKAW-EVLKGRPRNIDLILTE 84 (603)
Q Consensus 22 ~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~-A~dg~eAL-e~L~~~~~~pDLVLlD 84 (603)
.--..|-.|..+|+|||=|......+....++.||. +.. +-|...++ +.+. . .||++++|
T Consensus 166 sia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~-~--kFDvfiTD 228 (354)
T COG1568 166 SIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK-R--KFDVFITD 228 (354)
T ss_pred HHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHH-h--hCCeeecC
Confidence 334556677888999998888888888888888886 332 33555554 2222 1 38888888
No 442
>PRK03612 spermidine synthase; Provisional
Probab=30.87 E-value=2e+02 Score=32.98 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=42.9
Q ss_pred CEEEEEecCHHHHHHHHH--HHHhC---C---CEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH------HHHH
Q 007462 32 LRVLLVEADDSTRQIVTA--LLRKS---S---YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG------FALL 96 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~--lL~~~---G---y~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG------leLL 96 (603)
.+|.+||=|+.+.+..++ .+... . -++. ...|+.+.++.. ...+|+||+|...|...+ -+++
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---~~~fDvIi~D~~~~~~~~~~~L~t~ef~ 398 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---AEKFDVIIVDLPDPSNPALGKLYSVEFY 398 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---CCCCCEEEEeCCCCCCcchhccchHHHH
Confidence 699999999999999888 34321 1 1332 245666554432 235999999986665322 2566
Q ss_pred HHHHhc
Q 007462 97 TLVMEH 102 (603)
Q Consensus 97 r~Lr~~ 102 (603)
+.+++.
T Consensus 399 ~~~~~~ 404 (521)
T PRK03612 399 RLLKRR 404 (521)
T ss_pred HHHHHh
Confidence 666543
No 443
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=30.61 E-value=3.3e+02 Score=28.29 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=49.3
Q ss_pred CEEEEEecCH----HHHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEADD----STRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD~----~~r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
.+|.||-++. .....++..|+..|++|+. . .|....+..++... ||+|++... ..+...+++.++
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~~~~--~~~~~~~~~~~~ 208 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASG--ADAVLSTLV--GQDAVAFNRQFA 208 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcC--CCEEEEeCC--CCchHHHHHHHH
Confidence 4666655443 3345677778888988753 1 24555666666654 999998753 345678899988
Q ss_pred hcccCCCCeEEEEecC
Q 007462 101 EHEICKNIPVIMMSSQ 116 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~ 116 (603)
+... ..+++..+..
T Consensus 209 ~~G~--~~~~~~~~~~ 222 (333)
T cd06358 209 AAGL--RDRILRLSPL 222 (333)
T ss_pred HcCC--CccCceeecc
Confidence 6554 3355554443
No 444
>PLN02275 transferase, transferring glycosyl groups
Probab=30.53 E-value=5.5e+02 Score=27.41 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=65.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-EEEE---CCHHHHHHHHhcCCCCceEEEEeC-CC-CCCCHHHHHHHHHhccc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAV---PDGLKAWEVLKGRPRNIDLILTEV-DL-PSISGFALLTLVMEHEI 104 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A---~dg~eALe~L~~~~~~pDLVLlDl-~M-PgmDGleLLr~Lr~~~~ 104 (603)
.++.+||.|-+. +..|++.++..|.. ++.. -..++..+++.. .|+.++=. .. ...=+.-+++.+.
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA---- 331 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFG---- 331 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHH----
Confidence 478899988764 56777888877753 3332 234566666654 68877411 01 0112456777663
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
..+|||... ... ..+.+..|.++|++. +.++|.+.|.++
T Consensus 332 -~G~PVVa~~-~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 332 -CGLPVCAVS-YSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred -CCCCEEEec-CCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 367998743 333 345667899999986 578888777654
No 445
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=30.48 E-value=6e+02 Score=25.89 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=34.6
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
|....+..+.... +|+|++- ....++..+++.++.....+++|++......+.
T Consensus 174 d~~~~i~~l~~~~--~d~i~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 226 (333)
T cd06332 174 DFSAELAQIRAAK--PDAVFVF--LPGGMAVNFVKQYDQAGLKKKIPLYGPGFLTDQ 226 (333)
T ss_pred chHHHHHHHHhcC--CCEEEEe--cccchHHHHHHHHHHcCcccCCceeccCCCCCH
Confidence 5555566666544 8999873 344577888999887665456777755444443
No 446
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=30.41 E-value=5.4e+02 Score=25.32 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=59.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
.++++|+.+.+. ...+..++...+. .|.......+..+++.. .|++|+-... +.-|.-+++.+. ..+
T Consensus 220 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~i~ps~~-e~~~~~~~Ea~~-----~G~ 288 (353)
T cd03811 220 DARLVILGDGPL-REELEALAKELGLADRVHFLGFQSNPYPYLKA----ADLFVLSSRY-EGFPNVLLEAMA-----LGT 288 (353)
T ss_pred CceEEEEcCCcc-HHHHHHHHHhcCCCccEEEecccCCHHHHHHh----CCEEEeCccc-CCCCcHHHHHHH-----hCC
Confidence 456666665443 2334445554442 23333323344455543 5777764433 233566777764 357
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
|||.. ... ...+.+..|..+|+..+-+.+.+...+..+
T Consensus 289 PvI~~-~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i 326 (353)
T cd03811 289 PVVAT-DCP---GPREILEDGENGLLVPVGDEAALAAAALAL 326 (353)
T ss_pred CEEEc-CCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 88753 222 334567788899999999999986555554
No 447
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=30.39 E-value=1.7e+02 Score=32.58 Aligned_cols=26 Identities=8% Similarity=-0.127 Sum_probs=12.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
+|++++.+.....+...+++++++..
T Consensus 244 ~da~vvv~~~~~~~~~~~l~~a~~~g 269 (472)
T cd06374 244 PKARVVVCFCEGMTVRGLLMAMRRLG 269 (472)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHhc
Confidence 45444333223334555666655444
No 448
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=30.39 E-value=1.4e+02 Score=30.06 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=37.8
Q ss_pred EEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 007462 82 LTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (603)
Q Consensus 82 LlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L 147 (603)
++++.|-.-+.+++++.|++.. ++ -+|=.-..-+.+.+.+|+++||. |++-|.-..++....
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~--p~-~~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEF--PD-LLVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIEYA 97 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHH--TT-SEEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHC--CC-CeeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 4455555567888888887643 55 23444445688999999999996 666666555555443
No 449
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.37 E-value=3.8e+02 Score=31.14 Aligned_cols=105 Identities=12% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCCEEEEEec--CHHHHH---HHHHHHHhCCCEEEEECCHHHHHHH-H-h-----cCCCCceEEEEeCCCCCCCHHHHHH
Q 007462 30 MALRVLLVEA--DDSTRQ---IVTALLRKSSYRVTAVPDGLKAWEV-L-K-----GRPRNIDLILTEVDLPSISGFALLT 97 (603)
Q Consensus 30 m~lrVLLVDD--D~~~r~---lL~~lL~~~Gy~V~~A~dg~eALe~-L-~-----~~~~~pDLVLlDl~MPgmDGleLLr 97 (603)
..++|+||-. .+.... .|..+|...|++|.........+.. + . .....+|+||+ -|.|| .+|+
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG-T~L~ 363 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDG-TVLR 363 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcH-HHHH
Confidence 3468888833 344443 4455566678877765433222211 0 0 00113677776 37788 4566
Q ss_pred HHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 98 LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 98 ~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
..+... ..++||+-+. .|=.+||. .+..+++...|..+++..
T Consensus 364 aa~~~~-~~~~PilGin-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 364 ASKLVN-GEEIPIICIN-------------MGTVGFLT-EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred HHHHhc-CCCCCEEEEc-------------CCCCCcCc-ccCHHHHHHHHHHHHcCC
Confidence 665432 3578988554 47788887 789999999999987653
No 450
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=30.30 E-value=3.3e+02 Score=28.88 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=48.9
Q ss_pred CEEEEEecCH----HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEADD----STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD~----~~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
.+|.+|-.+. .....++..|+..|++|+.. .|....+..|+... ||+||+ .+.+-++..++++++
T Consensus 135 k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~--pDav~~--~~~~~~~~~~~~~~~ 210 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFK--PDVVFN--TLNGDSNVAFFKQLK 210 (359)
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHhC--CCEEEE--eccCCCHHHHHHHHH
Confidence 4565555442 34555778888889887532 25555666666544 999885 334556788899998
Q ss_pred hcccCCC-CeEEEE
Q 007462 101 EHEICKN-IPVIMM 113 (603)
Q Consensus 101 ~~~~~~~-IPVIml 113 (603)
+....+. +|++..
T Consensus 211 ~~G~~~~~~~~~~~ 224 (359)
T TIGR03407 211 NAGITAKDVPVVSF 224 (359)
T ss_pred HcCCCccCCcEEEe
Confidence 7654332 455543
No 451
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=30.29 E-value=1.2e+02 Score=29.83 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=34.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl 83 (603)
|+|+|||--.-....+...|+..|+++..+.+..+ +. .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----IL----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----hC----CCCEEEE
Confidence 58999997777777888899999999998887643 22 2687775
No 452
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.24 E-value=6.3e+02 Score=26.12 Aligned_cols=84 Identities=20% Similarity=0.095 Sum_probs=52.8
Q ss_pred EEEE-EecCHH---HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 33 RVLL-VEADDS---TRQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 33 rVLL-VDDD~~---~r~lL~~lL~~~Gy~V~~-------A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
+|.| ..|++. ....++..|+..|..|+. ..+....+..+.... +|+||+-. .+.+...++++++.
T Consensus 137 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~--~d~v~~~~--~~~~~~~~~~~~~~ 212 (340)
T cd06349 137 KVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDAN--PDAIILIS--YYNDGAPIARQARA 212 (340)
T ss_pred EEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcC--CCEEEEcc--ccchHHHHHHHHHH
Confidence 4444 344443 345566667778887763 235667777776654 89999854 34567888898876
Q ss_pred cccCCCCeEEEEecCCCHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTV 122 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~ 122 (603)
.. .++|++..+...+...+
T Consensus 213 ~g--~~~~~~~~~~~~~~~~~ 231 (340)
T cd06349 213 VG--LDIPVVASSSVYSPKFI 231 (340)
T ss_pred cC--CCCcEEccCCcCCHHHH
Confidence 55 35787766554444433
No 453
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=30.23 E-value=4.2e+02 Score=26.24 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=41.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.|++|+=... ..-|.-+++.+. ..+|||+ +..... .+.+..|..+++..+-+.+++...|..++.
T Consensus 264 adi~i~ps~~-e~~~~~~~Ea~~-----~G~Pvi~-s~~~~~---~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 264 ADVFVLPSYR-EGLPRVLLEAMA-----MGRPVIA-TDVPGC---REAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred ccEEEecCcc-cCcchHHHHHHH-----cCCCEEE-ecCCCc---hhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 4666653322 233667777763 3578886 333222 344555788899999999999999888653
No 454
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.20 E-value=2.8e+02 Score=27.43 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 43 TRQIVTALLRKSSYRVTAVP---DG---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~---dg---~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
+...+...+++.||.+.... +. .++++.+.... +|-||+--.. .+.-.+++.+++ .++|||++-..
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgii~~~~~--~~~~~~~~~~~~----~~ipvV~i~~~ 88 (269)
T cd06281 17 LFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRR--MDGIIIAPGD--ERDPELVDALAS----LDLPIVLLDRD 88 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcC--CCEEEEecCC--CCcHHHHHHHHh----CCCCEEEEecc
Confidence 34456666778899876542 22 24555565543 8877774322 233345666654 36899988643
No 455
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=30.20 E-value=1.3e+02 Score=31.43 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=30.1
Q ss_pred CEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeC
Q 007462 32 LRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 32 lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl 85 (603)
.+|.||+-|+. ....|..+-+..|+.+..+.+..+..+.++... .+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 57777777763 233344444445555555566555555555432 378888774
No 456
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=30.18 E-value=2.8e+02 Score=27.25 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCEEEEECC---HH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 44 RQIVTALLRKSSYRVTAVPD---GL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~d---g~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
...+.+.+++.||.+....+ .. +.++.+.... +|.||+- +...-..+++.+.+ .++|||++-.
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiii~---~~~~~~~~~~~l~~----~~iPvv~~~~ 86 (268)
T cd06273 18 IQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERG--VDGLALI---GLDHSPALLDLLAR----RGVPYVATWN 86 (268)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcC--CCEEEEe---CCCCCHHHHHHHHh----CCCCEEEEcC
Confidence 34456667788998776542 23 3444454433 7877762 11112355555543 3689888743
No 457
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=30.02 E-value=69 Score=36.85 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=46.1
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhcCCCCceEEEEeC--CCCCCCH--HHHHHHHHhcccCCC
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEV--DLPSISG--FALLTLVMEHEICKN 107 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl--~MPgmDG--leLLr~Lr~~~~~~~ 107 (603)
+|||||....+-..|..+|++.|+. |........-++.+... .||.||+-= .-|..++ +++++.+ ...
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~--~~d~vIlsgGP~~p~~~~~~~~li~~~-----~~~ 73 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEAL--NPSHIVISPGPGRPEEAGISVEVIRHF-----SGK 73 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhc--CCCEEEECCCCCChhhCCccHHHHHHh-----hcC
Confidence 3899999999999999999999985 65553221113333332 388887732 1222223 3344333 246
Q ss_pred CeEEEEe
Q 007462 108 IPVIMMS 114 (603)
Q Consensus 108 IPVImlS 114 (603)
+||+-+.
T Consensus 74 ~PvLGIC 80 (534)
T PRK14607 74 VPILGVC 80 (534)
T ss_pred CCEEEEc
Confidence 8988766
No 458
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=29.88 E-value=3.9e+02 Score=28.88 Aligned_cols=99 Identities=13% Similarity=0.009 Sum_probs=57.5
Q ss_pred EEEEEecCHHHHHHHHHH-------HHhCCC--E-EEEECCHHHHHHHHh---cCCCCceEEEEeCC--CCC---CCHHH
Q 007462 33 RVLLVEADDSTRQIVTAL-------LRKSSY--R-VTAVPDGLKAWEVLK---GRPRNIDLILTEVD--LPS---ISGFA 94 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~l-------L~~~Gy--~-V~~A~dg~eALe~L~---~~~~~pDLVLlDl~--MPg---mDGle 94 (603)
-|||=|.+-...-.+... ++..++ . .+.+.+.++|.+.++ .....+|+|++|=+ -|. .+--+
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~ 251 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSM 251 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHH
Confidence 377766665444333333 223333 2 345889999999997 11113899999943 121 13223
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 95 LLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+-+.+... .....|-.|+-...+.+.+.-..|++-+-
T Consensus 252 l~~av~~~---~~~~~lEaSGGIt~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 252 LKEAVELI---NGRFETEASGNVTLDTVHKIGQTGVTYIS 288 (308)
T ss_pred HHHHHHhh---CCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 33333211 12234778888899999998899987554
No 459
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=29.81 E-value=1.1e+02 Score=32.43 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=43.5
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCH
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG 92 (603)
+|||+.+.-..-..|...|. .+++|+.. .+.....+.+++.. ||+||--.-+...|.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~--PDvVIn~AAyt~vD~ 65 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETR--PDVVINAAAYTAVDK 65 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhC--CCEEEECcccccccc
Confidence 59999999999999999998 66777653 46777778887755 999996655554443
No 460
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=29.73 E-value=3.2e+02 Score=27.67 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHhcCCCCceEEEEeCCC----C-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHH
Q 007462 49 ALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDL----P-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTV 122 (603)
Q Consensus 49 ~lL~~~Gy-~V~~A~dg~eALe~L~~~~~~pDLVLlDl~M----P-gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~ 122 (603)
..|...|. -+..+..|...+..|.... ||.|=+|-.+ . ...+..+++.|......-++. |+..+.++.+..
T Consensus 147 ~~l~~~~~laLDDfG~g~s~l~~L~~l~--~d~IKiD~~~i~~i~~~~~~~~~~~~lv~~a~~~~~~-viAeGVEt~eq~ 223 (255)
T PRK11596 147 ASMCEFGPLWLDDFGTGMANFSALSEVR--YDYIKVARELFIMLRQSEEGRNLFSQLLHLMNRYCRG-VIVEGVETPEEW 223 (255)
T ss_pred HHHHHcCCEEEecCCCCHHHHHHHHhCC--CCEEEECHHHHHhhhcChhhHHHHHHHHHHHHHcCCe-EEEEeCCCHHHH
Confidence 34445551 2333556777788887654 9999998532 1 234555555543321112233 556788899999
Q ss_pred HHHHHcCCc---E-EEeCCCCHHHHHHHHH
Q 007462 123 YKCMMRGAA---D-YLVKPVRRNELRNLWQ 148 (603)
Q Consensus 123 ~~al~~GA~---D-yL~KP~~~~eL~~~L~ 148 (603)
..+.++|++ + |+.||....+|..++.
T Consensus 224 ~~l~~lG~d~~QGy~~~~P~~~~~~~~l~~ 253 (255)
T PRK11596 224 RDVQRSPAFAAQGYFLSRPAPFETLETLPL 253 (255)
T ss_pred HHHHHCCCCEeecCccCCCCCHHHHHHHHh
Confidence 999999986 4 5788999988876553
No 461
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.70 E-value=1.6e+02 Score=30.44 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=49.1
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCC-CC--HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH-HcCCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPS-IS--GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM-MRGAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPg-mD--GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al-~~GA~DyL~ 135 (603)
+..+.++.+.+.. --.++++|+.--+ +. -+++++++.+. ..+|||.--+..+.+.+.+++ ..|+++.++
T Consensus 153 ~~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 153 DPLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CHHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 3556666665543 1248888875433 22 36778888754 479999988899999999999 799998764
No 462
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.69 E-value=5.6e+02 Score=28.85 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCCEEEEEecCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHhcCCCCceEEEEeCCC--C-CCCHHHHH
Q 007462 30 MALRVLLVEADDS---TRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEVDL--P-SISGFALL 96 (603)
Q Consensus 30 m~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~---dg~----eALe~L~~~~~~pDLVLlDl~M--P-gmDGleLL 96 (603)
...+|+||+-|.. ..+.|..+-...|..+..+. ++. ++++.+... .+|+||+|..= + +-..++-+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTaGr~~~d~~l~~eL 204 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTAGRLQIDEELMEEL 204 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccccCHHHHHHH
Confidence 4579999999953 33444555555666655543 332 344444443 38999999731 2 12245555
Q ss_pred HHHHhcccCCCCeEEEEecCCCHHHH--HHHH--HcCCcEEEeC
Q 007462 97 TLVMEHEICKNIPVIMMSSQDSVSTV--YKCM--MRGAADYLVK 136 (603)
Q Consensus 97 r~Lr~~~~~~~IPVImlSa~~d~~~~--~~al--~~GA~DyL~K 136 (603)
..+... ..++-.++++.+....+.+ .+.+ ..+..++|.-
T Consensus 205 ~~i~~~-~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 205 AAIKEI-LNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHh-hCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEe
Confidence 555432 2244445556554432222 2233 2566666543
No 463
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=29.61 E-value=5e+02 Score=26.94 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=46.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECC-------HHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD-------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~d-------g~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
...|.++-.+... .+.+.|+..||.|....+ ..+.++.++... ||+||+|.- ..+. +..+.++..
T Consensus 31 g~~v~f~~~~~~~--~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~vV~D~y--~~~~-~~~~~~k~~- 102 (279)
T TIGR03590 31 GAEVAFACKPLPG--DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEK--FDILIVDHY--GLDA-DWEKLIKEF- 102 (279)
T ss_pred CCEEEEEeCCCCH--HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcC--CCEEEEcCC--CCCH-HHHHHHHHh-
Confidence 4566555444321 234677888998876643 345667777644 999999974 4443 355666532
Q ss_pred cCCCCeEEEEecCC
Q 007462 104 ICKNIPVIMMSSQD 117 (603)
Q Consensus 104 ~~~~IPVImlSa~~ 117 (603)
..+++++....
T Consensus 103 ---~~~l~~iDD~~ 113 (279)
T TIGR03590 103 ---GRKILVIDDLA 113 (279)
T ss_pred ---CCeEEEEecCC
Confidence 34667766543
No 464
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=29.60 E-value=5.9e+02 Score=25.54 Aligned_cols=111 Identities=10% Similarity=0.185 Sum_probs=57.6
Q ss_pred HhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHhcCCCCc-eEE-----EEe----------
Q 007462 25 TFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAV----PDGLKAWEVLKGRPRNI-DLI-----LTE---------- 84 (603)
Q Consensus 25 ~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A----~dg~eALe~L~~~~~~p-DLV-----LlD---------- 84 (603)
+++..-.+-.+|-..+......+...|-..|+.++.+ .+..++++.|.... + +++ |++
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~~~~~~~~a~~a 82 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVLSPEQVDRLADA 82 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecCCHHHHHHHHHc
Confidence 3444444444455555665656666666677766654 25556666665432 3 333 111
Q ss_pred ----CCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe---CCCCHHHHH
Q 007462 85 ----VDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV---KPVRRNELR 144 (603)
Q Consensus 85 ----l~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~---KP~~~~eL~ 144 (603)
+..|..|. ++++..+. ..++++ -+..+...+.++.+.|++.+-. .++.++.|.
T Consensus 83 GA~fivsp~~~~-~v~~~~~~----~~~~~~--~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~ 142 (206)
T PRK09140 83 GGRLIVTPNTDP-EVIRRAVA----LGMVVM--PGVATPTEAFAALRAGAQALKLFPASQLGPAGIK 142 (206)
T ss_pred CCCEEECCCCCH-HHHHHHHH----CCCcEE--cccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 12355444 55555432 233333 3345567778888888865544 344544444
No 465
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=29.58 E-value=5.5e+02 Score=25.51 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=57.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHH-hCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLR-KSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~-~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
.++++|+.+.+.. ..+..+.. ..+. .|.......+..+++.. .|++|+-... +.-|.-+++.+. ..
T Consensus 224 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-e~~~~~~~Ea~a-----~g 292 (365)
T cd03807 224 NARLLLVGDGPDR-ANLELLALKELGLEDKVILLGERSDVPALLNA----LDVFVLSSLS-EGFPNVLLEAMA-----CG 292 (365)
T ss_pred CeEEEEecCCcch-hHHHHHHHHhcCCCceEEEccccccHHHHHHh----CCEEEeCCcc-ccCCcHHHHHHh-----cC
Confidence 3566776554322 22222222 3232 23333333444555543 5787765443 333667777774 35
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
+|||+ +....... .+.. .+++..+-+.++|...|..++..
T Consensus 293 ~PvI~-~~~~~~~e---~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 293 LPVVA-TDVGDNAE---LVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEE-cCCCChHH---Hhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 78876 33332222 2222 67899999999999999887653
No 466
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=29.50 E-value=3.5e+02 Score=26.83 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=55.3
Q ss_pred CCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHhcCCCCceEEEEeCCCCCCC--HHHHHHH
Q 007462 31 ALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTL 98 (603)
Q Consensus 31 ~lrVLLVDDD~---~~r~lL~~lL~~~Gy~V~~A~---dg~----eALe~L~~~~~~pDLVLlDl~MPgmD--GleLLr~ 98 (603)
..+|.+|--|. .-.+.|+.+-+..|..+..+. +.. ++++.+.... +|+||+|. ||.+ -.+++.+
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~--~D~vlIDT--~Gr~~~d~~~~~e 104 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKG--YDLVLIDT--AGRSPRDEELLEE 104 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTT--SSEEEEEE---SSSSTHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcC--CCEEEEec--CCcchhhHHHHHH
Confidence 56777776664 455667777788888877765 232 3445554433 89999997 4432 2233333
Q ss_pred H---HhcccCCCCeEEEEecCCCHHH---HHHHHH-cCCcEEE-eC
Q 007462 99 V---MEHEICKNIPVIMMSSQDSVST---VYKCMM-RGAADYL-VK 136 (603)
Q Consensus 99 L---r~~~~~~~IPVImlSa~~d~~~---~~~al~-~GA~DyL-~K 136 (603)
| .+.. .+.-.++++++....+. +...++ .+...+| +|
T Consensus 105 l~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 105 LKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp HHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEES
T ss_pred HHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCceEEEEe
Confidence 3 3222 23445667776654443 333333 4566665 44
No 467
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=29.48 E-value=2.7e+02 Score=31.18 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=50.3
Q ss_pred CCEEEEEecCHHHHHHHH--HHHHhCC------CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH------HHHH
Q 007462 31 ALRVLLVEADDSTRQIVT--ALLRKSS------YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG------FALL 96 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~--~lL~~~G------y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG------leLL 96 (603)
..+|-+||=||.+.+.-+ ..|+..+ -+|..+. ++|..+++...+.+|.||+|+.-|.... .|+-
T Consensus 313 ~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY 390 (508)
T COG4262 313 VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFY 390 (508)
T ss_pred cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHH
Confidence 369999999999999988 5666431 2455543 4677777766667999999998887553 3555
Q ss_pred HHHHhc
Q 007462 97 TLVMEH 102 (603)
Q Consensus 97 r~Lr~~ 102 (603)
+.++.+
T Consensus 391 ~ll~~~ 396 (508)
T COG4262 391 RLLSRH 396 (508)
T ss_pred HHHHHh
Confidence 555543
No 468
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=29.42 E-value=5.4e+02 Score=25.09 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.7
Q ss_pred CHHHHHHHHHh
Q 007462 91 SGFALLTLVME 101 (603)
Q Consensus 91 DGleLLr~Lr~ 101 (603)
+...+++.++.
T Consensus 203 ~~~~~~~~~~~ 213 (299)
T cd04509 203 DAATILKQAAE 213 (299)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 469
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.41 E-value=5.5e+02 Score=29.33 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=64.3
Q ss_pred CCEEEEEecCH----HHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCC------C-----CCCH
Q 007462 31 ALRVLLVEADD----STRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL------P-----SISG 92 (603)
Q Consensus 31 ~lrVLLVDDD~----~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~M------P-----gmDG 92 (603)
...+++||--. .+.+.++.+=... +..|+. +.+.++|..+++.. .|.|-+-+.- . +.--
T Consensus 239 Gvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG---ad~v~vgig~gsictt~~~~~~~~p~ 315 (479)
T PRK07807 239 GVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG---ADIVKVGVGPGAMCTTRMMTGVGRPQ 315 (479)
T ss_pred CCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC---CCEEEECccCCcccccccccCCchhH
Confidence 46778887432 3333333333332 345544 67889998888753 7888744432 0 1122
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+.++..+.......++|||.--+......+.+|+.+||+..++-
T Consensus 316 ~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 316 FSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 34444443321124799999999999999999999999988754
No 470
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=29.41 E-value=5.4e+02 Score=25.08 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=44.3
Q ss_pred CEEEEEecC-H---HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEAD-D---STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD-~---~~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+|-++ . .....+...++..|+++... .+...++..+.... +|+||+-. ...+...+++.++
T Consensus 136 ~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~--~~~vi~~~--~~~~~~~~~~~~~ 211 (298)
T cd06268 136 KKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAG--PDAVFLAG--YGGDAALFLKQAR 211 (298)
T ss_pred CEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhcC--CCEEEEcc--ccchHHHHHHHHH
Confidence 355555333 2 33455555666667655432 24555565555433 67777642 2255667777776
Q ss_pred hcccCCCCeEEEEecCCCHH
Q 007462 101 EHEICKNIPVIMMSSQDSVS 120 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~ 120 (603)
+... +++||.+.......
T Consensus 212 ~~g~--~~~~~~~~~~~~~~ 229 (298)
T cd06268 212 EAGL--KVPIVGGDGAAAPA 229 (298)
T ss_pred HcCC--CCcEEecCccCCHH
Confidence 5542 56666655544433
No 471
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=29.39 E-value=2.7e+02 Score=29.46 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=48.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECC----HHHHHHHHhcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcccC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPD----GLKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHEIC 105 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~d----g~eALe~L~~~~~~pDLVLlDl~MPgmD--GleLLr~Lr~~~~~ 105 (603)
.-|++.||-..+..+|..+--...+.-..-.+ ....++.+.... -=.++.|..||..+ |..+++..++.
T Consensus 26 ~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~--~valvSDAG~P~ISDPG~~LV~~~~~~--- 100 (276)
T TIGR00096 26 VDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGN--NIAVSSDAGPPLISDPGHLLVACREKA--- 100 (276)
T ss_pred CCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCC--cEEEEecCCCCCcCCccHHHHHHHHHC---
Confidence 36788888877776666553221111111222 333344455432 34778899999976 99999998764
Q ss_pred CCCeEEEEecC
Q 007462 106 KNIPVIMMSSQ 116 (603)
Q Consensus 106 ~~IPVImlSa~ 116 (603)
+++|+.+-+.
T Consensus 101 -~i~v~~ipG~ 110 (276)
T TIGR00096 101 -NIIVVPLPGA 110 (276)
T ss_pred -CCeEEcCChH
Confidence 5677776543
No 472
>PLN02366 spermidine synthase
Probab=29.32 E-value=4.3e+02 Score=28.32 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=43.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC--CC---EEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCC-----HHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS--SY---RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-----GFALLTLV 99 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~--Gy---~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD-----GleLLr~L 99 (603)
..+|-+||=|+.+.+..+..+... ++ ++.. ..|+.+.++.... ..+|+||+|+.-|..- .-++++.+
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yDvIi~D~~dp~~~~~~L~t~ef~~~~ 192 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYDAIIVDSSDPVGPAQELFEKPFFESV 192 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCCEEEEcCCCCCCchhhhhHHHHHHHH
Confidence 368999999999888888887542 22 3332 4566555543322 3499999998766422 23556666
Q ss_pred Hh
Q 007462 100 ME 101 (603)
Q Consensus 100 r~ 101 (603)
+.
T Consensus 193 ~~ 194 (308)
T PLN02366 193 AR 194 (308)
T ss_pred HH
Confidence 54
No 473
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=29.32 E-value=6.7e+02 Score=27.57 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=70.3
Q ss_pred CccchHHhhhcCCCEEEEEecCHHHHHHHHHHHH-hCCCEEE--------EECCHHHHHHHHhcCCCCceEEEEeCCCCC
Q 007462 19 GIAKWETFLQRMALRVLLVEADDSTRQIVTALLR-KSSYRVT--------AVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89 (603)
Q Consensus 19 ~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~-~~Gy~V~--------~A~dg~eALe~L~~~~~~pDLVLlDl~MPg 89 (603)
+.++|+....-- -.|++.+++-..+.....-|. +.|+.++ .+--|.-++|++++....+|.||+-+...+
T Consensus 109 p~~Kv~a~r~~G-aeVil~g~~~dda~~~a~~~a~~~G~~~i~pfD~p~viAGQGTi~lEileq~~~~~d~v~vpvGGGG 187 (347)
T COG1171 109 PKIKVDATRGYG-AEVILHGDNFDDAYAAAEELAEEEGLTFVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGG 187 (347)
T ss_pred cHHHHHHHHhcC-CEEEEECCCHHHHHHHHHHHHHHcCCEEeCCCCCcceeecccHHHHHHHHhccccCCEEEEecCccH
Confidence 444454443222 389999999888888777665 5576543 355778899999887644699999987776
Q ss_pred C-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcC
Q 007462 90 I-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRG 129 (603)
Q Consensus 90 m-DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~G 129 (603)
+ .|+...-+- ..+.+.||.+-.... ..+.+++..|
T Consensus 188 LisGia~~~k~----~~p~~~vIGVEp~~a-~~~~~Sl~~G 223 (347)
T COG1171 188 LISGIATALKA----LSPEIKVIGVEPEGA-PSMYASLKAG 223 (347)
T ss_pred HHHHHHHHHHH----hCCCCeEEEEeeCCC-hHHHHHHHcC
Confidence 4 455443332 236788888776554 4455777778
No 474
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=29.28 E-value=7.4e+02 Score=30.22 Aligned_cols=115 Identities=11% Similarity=0.163 Sum_probs=76.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHh----CCCEEEE-ECCHHHHHHH----------------HhcCCCCceEEEEeCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRK----SSYRVTA-VPDGLKAWEV----------------LKGRPRNIDLILTEVDL 87 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~----~Gy~V~~-A~dg~eALe~----------------L~~~~~~pDLVLlDl~M 87 (603)
+-..+|++...++.....+..+++. .|++|+. +.+|.+.++. +... -+|+|++|++-
T Consensus 235 ~~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~TG--avD~~VvD~QC 312 (781)
T PRK00941 235 KSKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRSG--IPDVIVVDEQC 312 (781)
T ss_pred CCCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHcC--CCcEEEEeccc
Confidence 3347999999999999999999763 2666654 5677776533 3333 39999999965
Q ss_pred CCCCHHHHHHHHHhcccCCCCeEEEEecCC----------CHHHHHHHHHcCC-cE-EEeCCCCHHHHHHHHHHHHH
Q 007462 88 PSISGFALLTLVMEHEICKNIPVIMMSSQD----------SVSTVYKCMMRGA-AD-YLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 88 PgmDGleLLr~Lr~~~~~~~IPVImlSa~~----------d~~~~~~al~~GA-~D-yL~KP~~~~eL~~~L~~v~r 152 (603)
---+-.++.+.. ++++|-+|... +.+.+.+.+..|- .+ +|.-|....|+.-.+...+.
T Consensus 313 i~p~L~eiA~~y-------gt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a~~~~ 382 (781)
T PRK00941 313 VRTDILEEAKKL-------GIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVAKAVA 382 (781)
T ss_pred CcccHHHHHHHh-------CCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHHHHHh
Confidence 444444444433 56777666543 6777777776654 44 56668888887766655543
No 475
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=29.21 E-value=3.1e+02 Score=29.84 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=43.1
Q ss_pred CEEEEEecCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 32 LRVLLVEADDST----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 32 lrVLLVDDD~~~----r~lL~~lL~~~Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
-++|||-|.... ...+...|...|.++..+. +..++++.++... +|+||- ..|.+-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG--CDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCcHHHHHHHH
Confidence 589999886543 3457777887777665543 2456677776644 898883 457777777776
Q ss_pred HH
Q 007462 99 VM 100 (603)
Q Consensus 99 Lr 100 (603)
+.
T Consensus 104 ia 105 (377)
T cd08176 104 IG 105 (377)
T ss_pred HH
Confidence 63
No 476
>PRK08005 epimerase; Validated
Probab=28.90 E-value=1.6e+02 Score=29.93 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=55.8
Q ss_pred HHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH----HHHHhcccC-CCCeEEEEecCCC
Q 007462 47 VTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL----TLVMEHEIC-KNIPVIMMSSQDS 118 (603)
Q Consensus 47 L~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL----r~Lr~~~~~-~~IPVImlSa~~d 118 (603)
+-..+++.|..+-.| .+..+.++.+-. ..|.|++=..-||..|..++ ++|++.+.. +.. -|-+-+--.
T Consensus 98 ~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~---~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~-~I~VDGGI~ 173 (210)
T PRK08005 98 ILADIRAIGAKAGLALNPATPLLPYRYLAL---QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA-ECWADGGIT 173 (210)
T ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHHHH---hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccC-CEEEECCCC
Confidence 445566778765544 244444443332 27988888888998887555 355432211 222 377777788
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 007462 119 VSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 119 ~~~~~~al~~GA~DyL~K 136 (603)
.+.+..+.++||+-|+.-
T Consensus 174 ~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 174 LRAARLLAAAGAQHLVIG 191 (210)
T ss_pred HHHHHHHHHCCCCEEEEC
Confidence 999999999999988764
No 477
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=28.81 E-value=4.8e+02 Score=25.24 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=37.1
Q ss_pred CHHHHHHHHHhcccCCCCeE-EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPV-IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPV-ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~ 149 (603)
-|++++++|++. ...|| +-+..++....+..+.+.|++.+++-....++....++.
T Consensus 43 ~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 588999999853 34565 324444556778888899999987765545555544433
No 478
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.69 E-value=1.2e+02 Score=27.60 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhCCCEEEEEC------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 007462 33 RVLLVE----ADDSTRQIVTALLRKSSYRVTAVP------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (603)
Q Consensus 33 rVLLVD----DD~~~r~lL~~lL~~~Gy~V~~A~------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~ 102 (603)
+|.||. ....-...+..+.+ .||+|+.+. .|..+..-|.+....+|++++ ..|-....++++++...
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv--~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVV--CVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE---S-HHHHHHHHHHHHHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEECCCceEECcEEeeccccCCCCCCCEEEE--EcCHHHHHHHHHHHHHc
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCC
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGA 130 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA 130 (603)
. ---|++.++..+.+....|.+.|.
T Consensus 79 g---~~~v~~~~g~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 79 G---VKAVWLQPGAESEELIEAAREAGI 103 (116)
T ss_dssp T----SEEEE-TTS--HHHHHHHHHTT-
T ss_pred C---CCEEEEEcchHHHHHHHHHHHcCC
No 479
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=28.68 E-value=6.1e+02 Score=31.99 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=67.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-------------EEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-------------VTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-------------V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL 96 (603)
+.+||||.--..-+..+..+.+..+++ |+.+. +...|-++.+... ....|-+|+. |--+++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-~~~~v~lDv~----D~e~L~ 643 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-NAEAVQLDVS----DSESLL 643 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC-CCceEEeecC----CHHHHH
Confidence 469999998777666666665554544 55555 3344433333221 2456777752 334455
Q ss_pred HHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 97 TLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 97 r~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
..|.. .++.|+++-..-....+..|++.|.+-+-.| +..++...+.+.+
T Consensus 644 ~~v~~----~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~A 692 (1042)
T PLN02819 644 KYVSQ----VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKA 692 (1042)
T ss_pred HhhcC----CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHH
Confidence 55533 2444444444567888999999999877787 7777776655544
No 480
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=28.63 E-value=7.4e+02 Score=27.18 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHH
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL 143 (603)
..+..+++.......|++++=-. -..=|+-+++.+.. .+|||.... .. ..+.+..|..+||+.|-+.++|
T Consensus 327 ~~~~~~~~~~a~~~~Dv~v~pS~-~E~fg~~~lEAma~-----G~PvV~s~~-gg---~~eiv~~~~~G~lv~~~d~~~l 396 (439)
T TIGR02472 327 PDDVPELYRLAARSRGIFVNPAL-TEPFGLTLLEAAAC-----GLPIVATDD-GG---PRDIIANCRNGLLVDVLDLEAI 396 (439)
T ss_pred HHHHHHHHHHHhhcCCEEecccc-cCCcccHHHHHHHh-----CCCEEEeCC-CC---cHHHhcCCCcEEEeCCCCHHHH
Confidence 44555555421101377655322 12336778888743 568875543 22 2344567888999999999999
Q ss_pred HHHHHHHHH
Q 007462 144 RNLWQHVWR 152 (603)
Q Consensus 144 ~~~L~~v~r 152 (603)
...|..++.
T Consensus 397 a~~i~~ll~ 405 (439)
T TIGR02472 397 ASALEDALS 405 (439)
T ss_pred HHHHHHHHh
Confidence 999988764
No 481
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=28.62 E-value=4.4e+02 Score=29.25 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCC------CCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 45 QIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP------SISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MP------gmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
+.|..+-...+..|+ .+.+.++|...++.. +|.|++.- -. +..-+++|.+++.. ....+|||+=.+.
T Consensus 243 ~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G---~d~I~vsn-hGGr~~d~~~~t~~~L~ei~~~-~~~~~~vi~dGGI 317 (383)
T cd03332 243 EDLAFLREWTDLPIVLKGILHPDDARRAVEAG---VDGVVVSN-HGGRQVDGSIAALDALPEIVEA-VGDRLTVLFDSGV 317 (383)
T ss_pred HHHHHHHHhcCCCEEEecCCCHHHHHHHHHCC---CCEEEEcC-CCCcCCCCCcCHHHHHHHHHHH-hcCCCeEEEeCCc
Confidence 344444444444333 367888898888743 78888762 22 22357778777643 2246999998889
Q ss_pred CCHHHHHHHHHcCCcEEEeC
Q 007462 117 DSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~K 136 (603)
-.-..+.+|+.+||+..++-
T Consensus 318 r~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 318 RTGADIMKALALGAKAVLIG 337 (383)
T ss_pred CcHHHHHHHHHcCCCEEEEc
Confidence 99999999999999988753
No 482
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.54 E-value=4.4e+02 Score=27.25 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 43 TRQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~-------A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
....++..++..|.+++. ..+....+..+.... ||+||+-. ..-++..+++.+++.. ..+|+++...
T Consensus 149 ~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~~--pdaV~~~~--~~~~a~~~~~~~~~~G--~~~~~~~~~~ 222 (341)
T cd06341 149 AAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAG--ADAIITVL--DAAVCASVLKAVRAAG--LTPKVVLSGT 222 (341)
T ss_pred HHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhcC--CCEEEEec--ChHHHHHHHHHHHHcC--CCCCEEEecC
Confidence 344466667777876533 135667777776544 99998743 3447888999998765 3567766554
Q ss_pred CCCHH
Q 007462 116 QDSVS 120 (603)
Q Consensus 116 ~~d~~ 120 (603)
..+..
T Consensus 223 ~~~~~ 227 (341)
T cd06341 223 CYDPA 227 (341)
T ss_pred CCCHH
Confidence 44443
No 483
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.54 E-value=4.9e+02 Score=26.46 Aligned_cols=81 Identities=6% Similarity=0.080 Sum_probs=55.7
Q ss_pred CCHHHHHHHHhcCCCCceEEEEeCC-C-CCC-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC--
Q 007462 62 PDGLKAWEVLKGRPRNIDLILTEVD-L-PSI-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK-- 136 (603)
Q Consensus 62 ~dg~eALe~L~~~~~~pDLVLlDl~-M-Pgm-DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K-- 136 (603)
.++.+..+.+.... -.|+++|+. + .+. .-++++++|.+. ..+||++=-+-.+.+.+.+++.+|++..++-
T Consensus 30 ~dp~~~a~~~~~~~--~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 30 GDPVEIALRFSEYV--DKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred CCHHHHHHHHHHhC--CEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 37777777776531 247788885 2 232 458899998654 4689988778889999999999999988763
Q ss_pred CCCHHHHHHHH
Q 007462 137 PVRRNELRNLW 147 (603)
Q Consensus 137 P~~~~eL~~~L 147 (603)
-++++.|..+.
T Consensus 105 a~~~~~l~~~~ 115 (228)
T PRK04128 105 AFDLEFLEKVT 115 (228)
T ss_pred hcCHHHHHHHH
Confidence 44444444333
No 484
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.45 E-value=6.2e+02 Score=25.42 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=49.3
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHH
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~e 142 (603)
+.++..+++.. .|++|+-.. .+.-|..+++.+. ..+|||..- ... ..+.+..+-.+++..|.+.++
T Consensus 256 ~~~~~~~~~~~----~d~~l~~s~-~e~~~~~~lEa~a-----~g~PvI~~~-~~~---~~~~i~~~~~g~~~~~~~~~~ 321 (364)
T cd03814 256 DGEELAAAYAS----ADVFVFPSR-TETFGLVVLEAMA-----SGLPVVAPD-AGG---PADIVTDGENGLLVEPGDAEA 321 (364)
T ss_pred CHHHHHHHHHh----CCEEEECcc-cccCCcHHHHHHH-----cCCCEEEcC-CCC---chhhhcCCcceEEcCCCCHHH
Confidence 55666666653 577775432 2333567777763 367887543 222 223455677889999999999
Q ss_pred HHHHHHHHHH
Q 007462 143 LRNLWQHVWR 152 (603)
Q Consensus 143 L~~~L~~v~r 152 (603)
|...|..++.
T Consensus 322 l~~~i~~l~~ 331 (364)
T cd03814 322 FAAALAALLA 331 (364)
T ss_pred HHHHHHHHHc
Confidence 9999988764
No 485
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=28.44 E-value=3.1e+02 Score=26.97 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=34.1
Q ss_pred CceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcC-CcEE
Q 007462 77 NIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRG-AADY 133 (603)
Q Consensus 77 ~pDLVLlDl~MPg-------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~G-A~Dy 133 (603)
..|.||+|..-++ .-++++++.+. ..+||++.-+- +.+.+.+++..| ++++
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~-----~~~PvilaGGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA-----SRKPVILAGGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc-----cCCCEEEECCC-ChHHHHHHHHhcCCCEE
Confidence 3789999986553 22456676663 35788866654 677777888777 6554
No 486
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=28.40 E-value=3.6e+02 Score=27.41 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=56.8
Q ss_pred HHHHHHHHHH--HHhCCCEE--EEECCHHHHHHHHhcCCCCceEEEE---eCCCCCCCHHHHHHHHHhcc--cCCCCeEE
Q 007462 41 DSTRQIVTAL--LRKSSYRV--TAVPDGLKAWEVLKGRPRNIDLILT---EVDLPSISGFALLTLVMEHE--ICKNIPVI 111 (603)
Q Consensus 41 ~~~r~lL~~l--L~~~Gy~V--~~A~dg~eALe~L~~~~~~pDLVLl---Dl~MPgmDGleLLr~Lr~~~--~~~~IPVI 111 (603)
|.+...++.+ |...|+.| +.+-+..+|+...+.. .|.|=. -+.--+.||+++++.+.+.- ...++. |
T Consensus 85 P~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-I 160 (213)
T TIGR00875 85 PMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAKAG---ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-V 160 (213)
T ss_pred CCCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcC---CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-E
Confidence 3443444433 56667653 4467888888777653 333221 11112578999999886542 123555 5
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCC
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKP 137 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP 137 (603)
+..+.-+...+.++..+|++.+-+-|
T Consensus 161 laAS~r~~~~v~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 161 IAASVRHPRHVLEAALIGADIATMPL 186 (213)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEcCH
Confidence 56667788888899999998765443
No 487
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=28.39 E-value=4.3e+02 Score=28.84 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCCceEEEEeC---CCCC--CC--HHHHHHHHHhcccCCCCeEEEEecCCCH------HHHHHHHHcCC
Q 007462 64 GLKAWEVLKGRPRNIDLILTEV---DLPS--IS--GFALLTLVMEHEICKNIPVIMMSSQDSV------STVYKCMMRGA 130 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl---~MPg--mD--GleLLr~Lr~~~~~~~IPVImlSa~~d~------~~~~~al~~GA 130 (603)
...|.+.+.... +.+++|+.. ..|. .. -+..+..+++. .++|||+.+++..- .....|..+||
T Consensus 216 ~l~A~e~i~~~G-N~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~---~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GA 291 (335)
T PRK08673 216 WLMAAEYILAEG-NPNVILCERGIRTFETATRNTLDLSAVPVIKKL---THLPVIVDPSHATGKRDLVEPLALAAVAAGA 291 (335)
T ss_pred HHHHHHHHHHcC-CCeEEEEECCCCCCCCcChhhhhHHHHHHHHHh---cCCCEEEeCCCCCccccchHHHHHHHHHhCC
Confidence 444666666443 478999985 2321 11 12333344322 36899998887633 56778899999
Q ss_pred cEEE-eC
Q 007462 131 ADYL-VK 136 (603)
Q Consensus 131 ~DyL-~K 136 (603)
++.+ -|
T Consensus 292 dGliIE~ 298 (335)
T PRK08673 292 DGLIVEV 298 (335)
T ss_pred CEEEEEe
Confidence 9754 45
No 488
>PLN02535 glycolate oxidase
Probab=28.39 E-value=3.7e+02 Score=29.63 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=50.6
Q ss_pred ECCHHHHHHHHhcCCCCceEEEEe-CCCCC----CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 61 VPDGLKAWEVLKGRPRNIDLILTE-VDLPS----ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 61 A~dg~eALe~L~~~~~~pDLVLlD-l~MPg----mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+.+.++|..+++.. +|.|++. ..-.. ..-+++|.+++.. ....+|||+-.+......+.+++.+||+...+
T Consensus 231 V~~~~dA~~a~~~G---vD~I~vsn~GGr~~d~~~~t~~~L~ev~~a-v~~~ipVi~dGGIr~g~Dv~KALalGA~aV~v 306 (364)
T PLN02535 231 VLTREDAIKAVEVG---VAGIIVSNHGARQLDYSPATISVLEEVVQA-VGGRVPVLLDGGVRRGTDVFKALALGAQAVLV 306 (364)
T ss_pred CCCHHHHHHHHhcC---CCEEEEeCCCcCCCCCChHHHHHHHHHHHH-HhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 57888887777642 6777653 11111 1235677777542 22469999999999999999999999997754
Q ss_pred C-CC
Q 007462 136 K-PV 138 (603)
Q Consensus 136 K-P~ 138 (603)
- |+
T Consensus 307 Gr~~ 310 (364)
T PLN02535 307 GRPV 310 (364)
T ss_pred CHHH
Confidence 3 44
No 489
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=28.33 E-value=2.6e+02 Score=28.64 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=52.6
Q ss_pred ECCHHHHHHHHhcCCCCceEEEEeCCCCC---CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 61 VPDGLKAWEVLKGRPRNIDLILTEVDLPS---ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 61 A~dg~eALe~L~~~~~~pDLVLlDl~MPg---mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
..++.+..+.+.... --.|+|+|+.-.+ ..-++++++|.+. ..+||++--+-.+.+.+.+++..||+..++-
T Consensus 29 ~~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~---~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 29 AGDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAET---VFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347777777776533 1357888886543 2346778888654 3689999999999999999999999888764
No 490
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.17 E-value=7.4e+02 Score=26.28 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCEEEEEec-CHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH----HhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 30 MALRVLLVEA-DDSTR---QIVTALLRKSSYRVTAVPDGLKAWEV----LKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 30 m~lrVLLVDD-D~~~r---~lL~~lL~~~Gy~V~~A~dg~eALe~----L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
+..+|.||-. .+... ..|..+|...|+++.........+.. +......+|+||+ -|.|| .+|+.++.
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGDG-T~L~aa~~ 83 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLIS----LGGDG-TLISLCRK 83 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEE----ECCCH-HHHHHHHH
Confidence 3456888743 22333 33445566678887765433222210 0111113788876 37788 35555554
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
.. ..++||+-+. .|-.+||. .+.++++...|..++..
T Consensus 84 ~~-~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 84 AA-EYDKFVLGIH-------------AGHLGFLT-DITVDEAEKFFQAFFQG 120 (287)
T ss_pred hc-CCCCcEEEEe-------------CCCcccCC-cCCHHHHHHHHHHHHcC
Confidence 22 2478988654 46677875 57889999999888754
No 491
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=28.10 E-value=1.4e+02 Score=30.28 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=33.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHH
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKA 67 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eA 67 (603)
++|.|||=.--+...++..|++.|+++....+.++.
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 689999999999999999999999999999888874
No 492
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=28.10 E-value=86 Score=32.87 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=38.6
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNL 146 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~ 146 (603)
+.++++++|+.. ..++|+|+|+-+. -...+.+|-++|++++|+--+..+|-...
T Consensus 73 ~~~~~~~~ir~~--~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~ 132 (259)
T PF00290_consen 73 KIFELVKEIRKK--EPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEEL 132 (259)
T ss_dssp HHHHHHHHHHHH--CTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHH
T ss_pred HHHHHHHHHhcc--CCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 457888888733 2689999999754 33467778899999999986666554433
No 493
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=28.06 E-value=4.6e+02 Score=28.49 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=63.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC--CEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSS--YRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~G--y~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
+++.++.+.+. ...++.+....+ ..|.. .-+..+..+++.... .|++++=-...+ =|+-+++.+. ..
T Consensus 264 l~~~iiG~g~~-~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~--~~v~v~~S~~Eg-~p~~llEAma-----~G 334 (407)
T cd04946 264 IKWTHIGGGPL-EDTLKELAESKPENISVNFTGELSNSEVYKLYKENP--VDVFVNLSESEG-LPVSIMEAMS-----FG 334 (407)
T ss_pred EEEEEEeCchH-HHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcC--CCEEEeCCcccc-ccHHHHHHHH-----cC
Confidence 44455665443 344555554332 23433 335666667776433 677664332222 2556777763 35
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCC-CCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKP-VRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP-~~~~eL~~~L~~v~r 152 (603)
+|||. |.... ..+.+..|..++|.-| .+.++|...|..++.
T Consensus 335 ~PVIa-s~vgg---~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 335 IPVIA-TNVGG---TPEIVDNGGNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred CCEEe-CCCCC---cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 79886 43333 3355677888998876 488999999998764
No 494
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=28.01 E-value=2e+02 Score=27.89 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=47.5
Q ss_pred CCHHHHHHHHhcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEEE--ecCCCHHHHHHHHHcCCcEEEeCC
Q 007462 62 PDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIMM--SSQDSVSTVYKCMMRGAADYLVKP 137 (603)
Q Consensus 62 ~dg~eALe~L~~~~~~pDLVLlDl~MPg--mDGleLLr~Lr~~~~~~~IPVIml--Sa~~d~~~~~~al~~GA~DyL~KP 137 (603)
.+.++++++++..... +-++.+.+|- -.|+++++.|++.. +++||++. ........+..+.++||+.+++-.
T Consensus 10 ~~~~~~~~~~~~l~~~--i~~ieig~~~~~~~g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 10 LDLEEALELAKKVPDG--VDIIEAGTPLIKSEGMEAVRALREAF--PDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred CCHHHHHHHHHHhhhc--CCEEEcCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 4566677666654322 3345554443 35788899987642 46787763 232233345778899998776543
Q ss_pred CC-HHHHHHHHHH
Q 007462 138 VR-RNELRNLWQH 149 (603)
Q Consensus 138 ~~-~~eL~~~L~~ 149 (603)
.. .+.+..+++.
T Consensus 86 ~~~~~~~~~~i~~ 98 (202)
T cd04726 86 AAPLSTIKKAVKA 98 (202)
T ss_pred eCCHHHHHHHHHH
Confidence 32 2334444443
No 495
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=27.91 E-value=3.3e+02 Score=26.17 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=48.7
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHH---HhCCCE--EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALL---RKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL---~~~Gy~--V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
++.+ .-+.||.||+..+.-|+.-. ++.+-. |+-+.+ .++++.|++.. +.| .|-=.+|-++.++|.-
T Consensus 59 ~pg~-~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t-~~~L~~Lr~la--pgl-----~l~P~sgddLA~rL~l 129 (142)
T PF11072_consen 59 LPGL-QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVAT-EAALQRLRQLA--PGL-----PLLPVSGDDLARRLGL 129 (142)
T ss_pred CCCC-CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHHHHc--CCC-----eecCCCHHHHHHHhCC
Confidence 4444 57899999999999988764 444432 333443 56667676543 444 3445689999999932
Q ss_pred cccCCCCeEEEEe
Q 007462 102 HEICKNIPVIMMS 114 (603)
Q Consensus 102 ~~~~~~IPVImlS 114 (603)
.+-||+|..
T Consensus 130 ----~HYPvLIt~ 138 (142)
T PF11072_consen 130 ----SHYPVLITA 138 (142)
T ss_pred ----CcccEEeec
Confidence 466887643
No 496
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.80 E-value=3.2e+02 Score=27.18 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEec
Q 007462 45 QIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDG-leLLr~Lr~~~~~~~IPVImlSa 115 (603)
..+...+++.||++.... +.. +.++.+.... +|.||+-- .+.+. .++++++.. ..+|||++-.
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~--~Dgiii~~--~~~~~~~~~i~~~~~----~~iPvV~~~~ 88 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRG--VNVLIINP--VDPEGLVPAVAAAKA----AGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcC--CCEEEEec--CCccchHHHHHHHHH----CCCCEEEecC
Confidence 345556677899877653 222 3555555543 89888742 22222 355666643 4789998854
No 497
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.79 E-value=4.4e+02 Score=27.66 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=49.7
Q ss_pred EEEecCHHHHH---HHHHHHHhCCCEEEE-------ECCHHHHHHHHhcCCCCceEEEEeCCCCCC-CHHHHHHHHHhcc
Q 007462 35 LLVEADDSTRQ---IVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHE 103 (603)
Q Consensus 35 LLVDDD~~~r~---lL~~lL~~~Gy~V~~-------A~dg~eALe~L~~~~~~pDLVLlDl~MPgm-DGleLLr~Lr~~~ 103 (603)
+|..|++.-+. .++..|++.|++++. ..|....+..++... +|+||+-.. +- ++..+++.+++..
T Consensus 143 il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~--~d~v~~~~~--~~~~~~~~~~~~~~~g 218 (347)
T cd06336 143 LLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEK--PDVIFLGGP--SPAPAALVIKQARELG 218 (347)
T ss_pred EEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcC--CCEEEEcCC--CchHHHHHHHHHHHcC
Confidence 33444444333 345566778887753 247777788777654 999987543 44 6888999998765
Q ss_pred cCCCCeEEEEecCCC
Q 007462 104 ICKNIPVIMMSSQDS 118 (603)
Q Consensus 104 ~~~~IPVImlSa~~d 118 (603)
. ..+++.++....
T Consensus 219 ~--~~~~~~~~~~~~ 231 (347)
T cd06336 219 F--KGGFLSCTGDKY 231 (347)
T ss_pred C--CccEEeccCCCc
Confidence 3 456776665443
No 498
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=27.74 E-value=4.8e+02 Score=28.07 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHH---hCCCEEEEEC-----------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 40 DDSTRQIVTALLR---KSSYRVTAVP-----------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 40 D~~~r~lL~~lL~---~~Gy~V~~A~-----------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
+..-...++.+++ ..|++|+... +....|..++.. .+|+||+|.. ..+...+++++++....
T Consensus 127 sd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~--~~~~Iil~~~--~~~~~~il~qa~~~gm~ 202 (370)
T cd06389 127 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDRKDEAYRSLFQDLENK--KERRVILDCE--RDKVNDIVDQVITIGKH 202 (370)
T ss_pred CchHHHHHHHHHHhhccCCceEEEEEeecCCCccchHHHHHHHHHhccc--cceEEEEECC--HHHHHHHHHHHHHhCcc
Confidence 3344445555544 4576655321 344455666554 3899999864 34467888888776543
Q ss_pred CCCeEEEEecC
Q 007462 106 KNIPVIMMSSQ 116 (603)
Q Consensus 106 ~~IPVImlSa~ 116 (603)
..--..+++..
T Consensus 203 ~~~y~~il~~~ 213 (370)
T cd06389 203 VKGYHYIIANL 213 (370)
T ss_pred ccceEEEEccC
Confidence 32223234543
No 499
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=27.66 E-value=3.5e+02 Score=28.08 Aligned_cols=77 Identities=9% Similarity=0.058 Sum_probs=46.7
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD~~----~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+|-.+.. ....++..++..|++|+.. .+....+..|.... +|+|++-. .+.+...++++++
T Consensus 136 ~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--~d~v~~~~--~~~~~~~~~~~~~ 211 (334)
T cd06327 136 KKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASG--ADVLVLAN--AGADTVNAIKQAA 211 (334)
T ss_pred CeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCC--CCEEEEec--cchhHHHHHHHHH
Confidence 35555544433 4445555566778876542 36666666666544 89998843 4556778888888
Q ss_pred hcccCCCCeEEE
Q 007462 101 EHEICKNIPVIM 112 (603)
Q Consensus 101 ~~~~~~~IPVIm 112 (603)
+......++++.
T Consensus 212 ~~g~~~~~~~~~ 223 (334)
T cd06327 212 EFGLTKGQKLAG 223 (334)
T ss_pred HhCCccCCcEEE
Confidence 765433455544
No 500
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.65 E-value=2.8e+02 Score=27.38 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCC-CH-HHHHHHHHhcccCCCCeEEEEe
Q 007462 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSI-SG-FALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgm-DG-leLLr~Lr~~~~~~~IPVImlS 114 (603)
+...+...+++.||.+.... +.+ +.++.+.... +|-||+.-..+.. .. ...+..+.. .++|||++-
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~~~~~~~~i~~~~~----~~ipvV~i~ 90 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARG--VRGVVFISSLHADTHADHSHYERLAE----RGLPVVLVN 90 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcC--CCEEEEeCCCCCcccchhHHHHHHHh----CCCCEEEEc
Confidence 33456666777899876543 222 4566666544 8977774333222 11 233455533 368988885
Q ss_pred c
Q 007462 115 S 115 (603)
Q Consensus 115 a 115 (603)
.
T Consensus 91 ~ 91 (273)
T cd06292 91 G 91 (273)
T ss_pred C
Confidence 4
Done!