Query 007462
Match_columns 603
No_of_seqs 402 out of 1904
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 02:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.5E-26 5E-31 213.2 15.6 121 31-153 12-133 (134)
2 3gl9_A Response regulator; bet 99.9 1.3E-22 4.4E-27 178.6 17.7 121 30-152 1-121 (122)
3 3t6k_A Response regulator rece 99.9 1.1E-21 3.7E-26 175.9 17.9 123 31-155 4-126 (136)
4 3f6p_A Transcriptional regulat 99.9 1.5E-21 5.3E-26 170.9 17.0 119 30-153 1-119 (120)
5 2lpm_A Two-component response 99.9 5.2E-24 1.8E-28 193.7 -0.9 114 29-151 6-120 (123)
6 3h1g_A Chemotaxis protein CHEY 99.9 6.9E-21 2.4E-25 168.5 16.6 122 31-153 5-127 (129)
7 2r25_B Osmosensing histidine p 99.9 1.4E-20 4.7E-25 168.0 16.9 120 31-153 2-127 (133)
8 3gt7_A Sensor protein; structu 99.9 2.7E-20 9.1E-25 170.2 18.6 126 29-156 5-130 (154)
9 3m6m_D Sensory/regulatory prot 99.8 3.9E-20 1.3E-24 167.4 17.5 121 30-152 13-135 (143)
10 1srr_A SPO0F, sporulation resp 99.8 2.6E-20 8.9E-25 162.7 15.6 119 30-152 2-120 (124)
11 3crn_A Response regulator rece 99.8 5.6E-20 1.9E-24 163.3 17.9 120 31-154 3-122 (132)
12 1zgz_A Torcad operon transcrip 99.8 6.7E-20 2.3E-24 159.3 18.0 119 30-153 1-119 (122)
13 2pl1_A Transcriptional regulat 99.8 7.7E-20 2.6E-24 158.3 18.2 119 32-154 1-119 (121)
14 3rqi_A Response regulator prot 99.8 9.1E-21 3.1E-25 179.2 13.2 120 31-154 7-126 (184)
15 3heb_A Response regulator rece 99.8 7.9E-20 2.7E-24 165.8 18.9 127 30-156 3-138 (152)
16 1dbw_A Transcriptional regulat 99.8 9E-20 3.1E-24 160.0 18.5 120 31-154 3-122 (126)
17 1tmy_A CHEY protein, TMY; chem 99.8 3.8E-20 1.3E-24 160.4 15.5 118 30-151 1-119 (120)
18 3lua_A Response regulator rece 99.8 1.5E-20 5.2E-25 167.9 13.4 125 30-156 3-130 (140)
19 3kht_A Response regulator; PSI 99.8 5E-20 1.7E-24 165.3 16.7 125 30-156 4-131 (144)
20 1mb3_A Cell division response 99.8 4.4E-20 1.5E-24 160.6 15.0 120 32-153 2-121 (124)
21 2jba_A Phosphate regulon trans 99.8 1.3E-20 4.4E-25 164.7 11.4 123 30-154 1-123 (127)
22 1jbe_A Chemotaxis protein CHEY 99.8 1.2E-19 4.2E-24 158.9 17.5 121 31-153 4-125 (128)
23 1p6q_A CHEY2; chemotaxis, sign 99.8 4.9E-20 1.7E-24 161.7 14.9 121 31-153 6-127 (129)
24 3grc_A Sensor protein, kinase; 99.8 3.8E-20 1.3E-24 165.0 14.3 124 31-156 6-130 (140)
25 3cfy_A Putative LUXO repressor 99.8 5.6E-20 1.9E-24 164.9 15.3 121 30-154 3-123 (137)
26 3i42_A Response regulator rece 99.8 3.2E-20 1.1E-24 162.8 12.9 121 31-154 3-123 (127)
27 3kto_A Response regulator rece 99.8 4.2E-20 1.4E-24 164.9 13.7 122 31-156 6-129 (136)
28 1mvo_A PHOP response regulator 99.8 8.9E-20 3E-24 161.5 15.6 122 30-155 2-123 (136)
29 3hdv_A Response regulator; PSI 99.8 1.9E-19 6.4E-24 159.7 17.7 124 30-155 6-129 (136)
30 1i3c_A Response regulator RCP1 99.8 1.9E-19 6.6E-24 163.3 18.2 124 31-154 8-138 (149)
31 3hv2_A Response regulator/HD d 99.8 1.8E-19 6.2E-24 163.9 17.7 120 31-154 14-134 (153)
32 3hdg_A Uncharacterized protein 99.8 7.6E-20 2.6E-24 162.4 14.9 123 29-155 5-127 (137)
33 1dz3_A Stage 0 sporulation pro 99.8 7.4E-20 2.5E-24 161.4 14.7 122 30-154 1-124 (130)
34 3nhm_A Response regulator; pro 99.8 1E-19 3.6E-24 160.4 15.5 122 31-156 4-125 (133)
35 3jte_A Response regulator rece 99.8 2.8E-19 9.6E-24 159.9 18.4 124 31-156 3-126 (143)
36 3luf_A Two-component system re 99.8 1.2E-19 4E-24 182.4 17.7 126 29-155 122-247 (259)
37 2a9o_A Response regulator; ess 99.8 1.9E-19 6.5E-24 155.3 16.5 117 32-153 2-118 (120)
38 3ilh_A Two component response 99.8 2E-19 6.9E-24 160.4 17.1 122 31-154 9-140 (146)
39 4e7p_A Response regulator; DNA 99.8 2.1E-19 7E-24 163.0 17.5 130 22-155 11-142 (150)
40 3eod_A Protein HNR; response r 99.8 1.1E-19 3.9E-24 159.9 15.2 120 31-154 7-127 (130)
41 3cnb_A DNA-binding response re 99.8 3.2E-19 1.1E-23 158.5 18.2 125 30-156 7-133 (143)
42 1k66_A Phytochrome response re 99.8 1.7E-19 5.8E-24 161.0 16.5 126 29-154 4-139 (149)
43 1xhf_A DYE resistance, aerobic 99.8 3.4E-19 1.2E-23 155.1 17.8 117 32-153 4-120 (123)
44 3r0j_A Possible two component 99.8 1.7E-19 5.7E-24 178.5 17.4 120 31-154 23-142 (250)
45 3c3m_A Response regulator rece 99.8 1.9E-19 6.4E-24 161.0 16.1 121 32-154 4-124 (138)
46 1k68_A Phytochrome response re 99.8 3.6E-19 1.2E-23 156.9 17.6 124 31-154 2-132 (140)
47 3hzh_A Chemotaxis response reg 99.8 1.2E-19 4E-24 166.5 14.9 121 30-152 35-156 (157)
48 3n0r_A Response regulator; sig 99.8 2E-20 6.9E-25 191.7 10.9 119 30-155 159-279 (286)
49 3b2n_A Uncharacterized protein 99.8 1.9E-19 6.6E-24 160.0 15.8 120 32-155 4-125 (133)
50 2qzj_A Two-component response 99.8 2.4E-19 8.4E-24 160.5 16.5 119 31-154 4-122 (136)
51 3f6c_A Positive transcription 99.8 7.2E-20 2.5E-24 161.6 12.6 122 32-157 2-124 (134)
52 3snk_A Response regulator CHEY 99.8 2.2E-20 7.7E-25 166.1 8.4 120 30-153 13-133 (135)
53 2zay_A Response regulator rece 99.8 2E-19 6.8E-24 161.6 14.6 124 30-155 7-130 (147)
54 3lte_A Response regulator; str 99.8 4.8E-19 1.6E-23 155.9 16.7 121 31-154 6-126 (132)
55 3h5i_A Response regulator/sens 99.8 1.1E-19 3.7E-24 163.0 12.6 121 31-155 5-126 (140)
56 1zh2_A KDP operon transcriptio 99.8 3.9E-19 1.4E-23 153.5 15.6 118 32-154 2-119 (121)
57 2qxy_A Response regulator; reg 99.8 3.9E-19 1.3E-23 158.8 15.9 121 30-155 3-123 (142)
58 3cg4_A Response regulator rece 99.8 1.2E-19 4E-24 161.9 12.3 125 29-155 5-129 (142)
59 3mm4_A Histidine kinase homolo 99.8 2.1E-19 7.3E-24 173.7 14.9 122 31-154 61-197 (206)
60 1kgs_A DRRD, DNA binding respo 99.8 3E-19 1E-23 172.2 15.7 122 30-155 1-122 (225)
61 4dad_A Putative pilus assembly 99.8 2.1E-19 7.2E-24 161.6 13.6 121 30-154 19-142 (146)
62 3cu5_A Two component transcrip 99.8 1.8E-19 6.2E-24 162.3 12.8 121 30-154 1-124 (141)
63 2gkg_A Response regulator homo 99.8 5.2E-19 1.8E-23 153.3 13.9 121 30-153 4-125 (127)
64 3n53_A Response regulator rece 99.8 2.2E-19 7.5E-24 160.4 11.5 123 31-156 3-125 (140)
65 3kcn_A Adenylate cyclase homol 99.8 1.3E-18 4.5E-23 157.8 16.7 121 30-154 3-124 (151)
66 1a04_A Nitrate/nitrite respons 99.8 1.4E-18 4.7E-23 167.0 17.3 122 30-155 4-127 (215)
67 2qr3_A Two-component system re 99.8 1.5E-18 5.2E-23 153.9 16.3 122 31-156 3-129 (140)
68 1yio_A Response regulatory pro 99.8 4.9E-19 1.7E-23 169.0 14.1 120 31-154 4-123 (208)
69 3eq2_A Probable two-component 99.8 2.2E-19 7.6E-24 189.8 12.9 124 27-154 1-125 (394)
70 3cg0_A Response regulator rece 99.8 1.3E-18 4.5E-23 154.3 15.9 121 31-156 9-131 (140)
71 3q9s_A DNA-binding response re 99.8 6.8E-19 2.3E-23 175.2 15.5 123 27-154 32-155 (249)
72 3a10_A Response regulator; pho 99.8 4.5E-19 1.5E-23 152.7 12.3 114 32-151 2-115 (116)
73 3eul_A Possible nitrate/nitrit 99.8 1.9E-18 6.4E-23 156.7 16.6 123 30-156 14-138 (152)
74 2rjn_A Response regulator rece 99.8 2.9E-18 9.8E-23 155.8 17.5 120 31-154 7-127 (154)
75 1s8n_A Putative antiterminator 99.8 7.5E-19 2.6E-23 167.9 14.3 120 30-154 12-132 (205)
76 3dzd_A Transcriptional regulat 99.8 4.7E-19 1.6E-23 188.0 14.2 119 33-155 2-120 (368)
77 2ayx_A Sensor kinase protein R 99.8 8.1E-19 2.8E-23 175.4 15.2 120 31-154 129-248 (254)
78 1dcf_A ETR1 protein; beta-alph 99.8 2.1E-18 7.1E-23 153.3 16.1 121 31-154 7-130 (136)
79 2qvg_A Two component response 99.8 2.3E-18 7.9E-23 153.6 15.8 121 31-151 7-133 (143)
80 3cz5_A Two-component response 99.8 2.1E-18 7.1E-23 156.6 15.6 121 31-155 5-127 (153)
81 2gwr_A DNA-binding response re 99.8 8.4E-19 2.9E-23 171.9 12.8 123 27-154 1-123 (238)
82 1qkk_A DCTD, C4-dicarboxylate 99.8 3.5E-18 1.2E-22 155.4 15.8 120 31-154 3-122 (155)
83 1w25_A Stalked-cell differenti 99.8 2.2E-18 7.6E-23 184.9 16.5 121 32-154 2-122 (459)
84 2jk1_A HUPR, hydrogenase trans 99.8 5.4E-18 1.9E-22 151.4 16.3 118 32-154 2-120 (139)
85 2oqr_A Sensory transduction pr 99.8 1.5E-18 5.1E-23 168.2 13.6 120 30-154 3-122 (230)
86 1p2f_A Response regulator; DRR 99.8 4.2E-18 1.4E-22 164.2 15.2 118 30-154 1-118 (220)
87 1ys7_A Transcriptional regulat 99.8 2.3E-18 7.7E-23 166.9 13.2 121 31-155 7-127 (233)
88 1ny5_A Transcriptional regulat 99.8 5E-18 1.7E-22 181.0 16.4 119 32-154 1-119 (387)
89 2qv0_A Protein MRKE; structura 99.8 1.4E-17 4.7E-22 148.9 16.5 120 29-154 7-128 (143)
90 3eqz_A Response regulator; str 99.8 2E-18 6.9E-23 151.9 10.6 119 31-154 3-126 (135)
91 3c97_A Signal transduction his 99.8 3.9E-18 1.3E-22 152.5 12.4 120 30-154 9-131 (140)
92 2rdm_A Response regulator rece 99.8 1.5E-17 5.2E-22 146.0 15.7 120 31-155 5-125 (132)
93 2qsj_A DNA-binding response re 99.8 4.7E-18 1.6E-22 154.1 12.8 122 31-156 3-127 (154)
94 3t8y_A CHEB, chemotaxis respon 99.8 9.1E-18 3.1E-22 155.4 15.0 130 19-153 10-155 (164)
95 3bre_A Probable two-component 99.7 5.2E-18 1.8E-22 175.6 13.6 120 31-152 18-138 (358)
96 2pln_A HP1043, response regula 99.7 2.9E-17 1E-21 146.0 16.3 117 28-153 15-133 (137)
97 2j48_A Two-component sensor ki 99.7 6.1E-18 2.1E-22 143.9 11.0 115 32-151 2-116 (119)
98 3c3w_A Two component transcrip 99.7 2.7E-18 9.1E-23 167.5 7.8 120 32-155 2-123 (225)
99 3klo_A Transcriptional regulat 99.7 3.3E-18 1.1E-22 166.4 8.4 123 30-155 6-131 (225)
100 3kyj_B CHEY6 protein, putative 99.7 1.3E-17 4.4E-22 150.0 11.1 114 30-147 12-129 (145)
101 3sy8_A ROCR; TIM barrel phosph 99.7 1.6E-17 5.3E-22 176.9 13.3 149 31-184 3-158 (400)
102 2b4a_A BH3024; flavodoxin-like 99.7 1.3E-17 4.4E-22 148.5 9.3 123 23-153 7-131 (138)
103 1dc7_A NTRC, nitrogen regulati 99.7 5.7E-19 2E-23 152.8 -0.4 119 32-154 4-122 (124)
104 1qo0_D AMIR; binding protein, 99.7 3E-17 1E-21 155.7 10.4 115 31-154 12-126 (196)
105 2hqr_A Putative transcriptiona 99.7 1.1E-16 3.6E-21 154.7 14.4 115 32-154 1-116 (223)
106 3luf_A Two-component system re 99.6 3.7E-16 1.3E-20 156.9 10.0 104 31-141 4-108 (259)
107 1a2o_A CHEB methylesterase; ba 99.6 2E-15 6.7E-20 159.3 15.5 118 31-153 3-133 (349)
108 2vyc_A Biodegradative arginine 99.6 1.5E-15 5.1E-20 175.0 9.8 120 32-154 1-134 (755)
109 1w25_A Stalked-cell differenti 99.1 1.1E-09 3.6E-14 117.5 17.4 119 31-153 152-270 (459)
110 3cwo_X Beta/alpha-barrel prote 99.1 1E-10 3.5E-15 112.8 6.9 93 57-153 7-101 (237)
111 2ayx_A Sensor kinase protein R 97.1 0.00055 1.9E-08 67.7 6.0 95 31-152 11-105 (254)
112 3n75_A LDC, lysine decarboxyla 97.0 0.00078 2.7E-08 77.4 7.0 103 45-153 20-123 (715)
113 3q7r_A Transcriptional regulat 96.9 0.0025 8.7E-08 55.7 7.9 107 31-154 12-119 (121)
114 3cwo_X Beta/alpha-barrel prote 96.1 0.012 3.9E-07 56.1 7.8 82 63-148 131-221 (237)
115 2yxb_A Coenzyme B12-dependent 94.9 0.55 1.9E-05 43.8 14.5 119 31-153 18-145 (161)
116 1wv2_A Thiazole moeity, thiazo 92.7 0.83 2.8E-05 46.3 11.6 96 47-149 127-234 (265)
117 3ogl_Q JAZ1 incomplete degron 92.4 0.065 2.2E-06 33.8 1.9 19 538-556 3-21 (21)
118 3q58_A N-acetylmannosamine-6-p 92.2 0.84 2.9E-05 45.0 11.0 89 41-136 115-210 (229)
119 3igs_A N-acetylmannosamine-6-p 90.9 1.4 4.9E-05 43.4 11.1 89 41-136 115-210 (232)
120 1ccw_A Protein (glutamate muta 90.8 2.5 8.7E-05 38.0 11.8 110 38-150 14-133 (137)
121 1y80_A Predicted cobalamin bin 89.6 1.3 4.3E-05 42.6 9.1 100 31-135 88-196 (210)
122 3qja_A IGPS, indole-3-glycerol 88.4 5.7 0.00019 40.1 13.4 99 33-136 138-242 (272)
123 3ogk_Q JAZ1 incomplete degron 87.7 0.13 4.4E-06 32.9 0.5 19 541-559 1-19 (22)
124 2htm_A Thiazole biosynthesis p 87.5 1.3 4.5E-05 44.9 7.9 94 50-149 119-225 (268)
125 3ezx_A MMCP 1, monomethylamine 87.3 2.3 8E-05 41.4 9.4 100 31-135 92-202 (215)
126 2i2x_B MTAC, methyltransferase 86.5 5.2 0.00018 39.8 11.7 111 31-151 123-242 (258)
127 3kp1_A D-ornithine aminomutase 86.1 6.1 0.00021 44.8 12.8 123 27-154 598-736 (763)
128 1xrs_B D-lysine 5,6-aminomutas 84.7 8.3 0.00028 38.9 12.2 116 31-151 120-256 (262)
129 3ffs_A Inosine-5-monophosphate 83.3 13 0.00043 39.8 13.5 103 31-136 156-275 (400)
130 2bdq_A Copper homeostasis prot 81.5 3.1 0.00011 41.1 7.4 120 2-136 66-207 (224)
131 4fo4_A Inosine 5'-monophosphat 79.7 19 0.00064 38.0 13.1 103 30-136 119-240 (366)
132 3fkq_A NTRC-like two-domain pr 78.8 3.8 0.00013 42.6 7.5 107 27-151 17-126 (373)
133 1twd_A Copper homeostasis prot 78.6 5 0.00017 40.5 7.8 117 2-134 63-196 (256)
134 3f4w_A Putative hexulose 6 pho 78.5 26 0.0009 32.8 12.7 98 31-136 77-187 (211)
135 2bfw_A GLGA glycogen synthase; 78.2 34 0.0012 30.8 13.0 106 31-152 70-179 (200)
136 2q5c_A NTRC family transcripti 77.5 35 0.0012 32.3 13.3 120 30-152 3-140 (196)
137 1yad_A Regulatory protein TENI 77.3 14 0.00048 35.2 10.5 74 55-135 110-191 (221)
138 3tsm_A IGPS, indole-3-glycerol 76.7 24 0.00083 35.6 12.4 99 33-136 145-249 (272)
139 3o63_A Probable thiamine-phosp 76.5 17 0.00057 36.1 11.0 86 60-150 141-238 (243)
140 2ekc_A AQ_1548, tryptophan syn 76.3 8.9 0.0003 38.2 9.1 58 92-151 81-144 (262)
141 3iwp_A Copper homeostasis prot 76.0 4.8 0.00016 41.2 7.0 124 2-135 101-237 (287)
142 2gek_A Phosphatidylinositol ma 75.3 19 0.00064 36.2 11.3 108 31-153 240-349 (406)
143 2xij_A Methylmalonyl-COA mutas 74.8 20 0.00067 41.4 12.3 119 31-153 604-731 (762)
144 1thf_D HISF protein; thermophI 74.0 20 0.00069 34.6 10.8 79 64-147 153-241 (253)
145 1req_A Methylmalonyl-COA mutas 73.7 18 0.00062 41.5 11.7 117 31-151 596-721 (727)
146 3khj_A Inosine-5-monophosphate 72.8 27 0.00093 36.5 12.0 103 31-136 117-236 (361)
147 2gjl_A Hypothetical protein PA 72.5 28 0.00097 35.3 11.9 82 49-136 112-201 (328)
148 1xm3_A Thiazole biosynthesis p 72.3 5.3 0.00018 39.9 6.2 76 55-136 126-207 (264)
149 1ka9_F Imidazole glycerol phos 71.5 21 0.00072 34.4 10.3 68 78-148 166-243 (252)
150 3fro_A GLGA glycogen synthase; 71.5 38 0.0013 34.1 12.6 107 30-152 284-394 (439)
151 3usb_A Inosine-5'-monophosphat 71.4 56 0.0019 35.7 14.6 107 27-136 264-388 (511)
152 3vnd_A TSA, tryptophan synthas 70.4 7.2 0.00025 39.3 6.7 56 93-150 83-144 (267)
153 2w6r_A Imidazole glycerol phos 69.9 14 0.00049 36.0 8.7 66 65-136 159-229 (266)
154 3beo_A UDP-N-acetylglucosamine 69.6 58 0.002 32.2 13.3 101 31-152 238-341 (375)
155 2v82_A 2-dehydro-3-deoxy-6-pho 69.1 8.9 0.0003 36.3 6.8 79 49-136 95-176 (212)
156 3fwz_A Inner membrane protein 67.8 45 0.0015 29.1 10.8 98 27-135 26-124 (140)
157 3rht_A (gatase1)-like protein; 67.3 2.3 7.8E-05 42.8 2.3 50 31-84 4-57 (259)
158 1r8j_A KAIA; circadian clock p 67.2 30 0.001 35.1 10.2 83 30-116 8-90 (289)
159 2oo3_A Protein involved in cat 66.9 10 0.00035 38.7 7.0 70 32-101 114-184 (283)
160 2v5j_A 2,4-dihydroxyhept-2-ENE 66.9 72 0.0025 32.2 13.4 99 47-149 30-132 (287)
161 1qo2_A Molecule: N-((5-phospho 66.5 35 0.0012 32.8 10.6 78 63-146 145-239 (241)
162 1xi3_A Thiamine phosphate pyro 66.5 20 0.00067 33.5 8.6 70 60-136 114-190 (215)
163 1y0e_A Putative N-acetylmannos 65.7 41 0.0014 31.8 10.8 87 44-136 107-204 (223)
164 1geq_A Tryptophan synthase alp 65.7 13 0.00044 36.0 7.3 54 92-148 68-127 (248)
165 1eep_A Inosine 5'-monophosphat 65.5 58 0.002 34.1 12.9 93 41-136 179-285 (404)
166 2c6q_A GMP reductase 2; TIM ba 65.5 85 0.0029 32.5 13.9 103 32-138 133-255 (351)
167 1ka9_F Imidazole glycerol phos 64.8 23 0.00079 34.1 8.9 69 63-136 32-104 (252)
168 2vws_A YFAU, 2-keto-3-deoxy su 64.7 93 0.0032 30.8 13.6 100 47-150 9-112 (267)
169 3bo9_A Putative nitroalkan dio 64.7 52 0.0018 33.6 12.0 82 49-136 118-205 (326)
170 3bw2_A 2-nitropropane dioxygen 64.5 57 0.0019 33.7 12.4 78 53-136 143-237 (369)
171 1qop_A Tryptophan synthase alp 64.3 14 0.00047 36.8 7.3 57 92-150 81-143 (268)
172 3r2g_A Inosine 5'-monophosphat 64.2 1.1E+02 0.0038 32.0 14.5 99 30-136 111-228 (361)
173 2f9f_A First mannosyl transfer 64.0 42 0.0014 30.0 10.0 108 31-154 50-163 (177)
174 3u3x_A Oxidoreductase; structu 64.0 32 0.0011 35.4 10.3 113 21-151 18-136 (361)
175 1rzu_A Glycogen synthase 1; gl 63.9 62 0.0021 33.6 12.7 107 31-151 320-438 (485)
176 3ezy_A Dehydrogenase; structur 63.6 24 0.00083 35.7 9.2 107 30-152 1-113 (344)
177 1geq_A Tryptophan synthase alp 63.5 21 0.00072 34.4 8.4 97 33-136 110-220 (248)
178 4a29_A Engineered retro-aldol 63.3 1.1E+02 0.0037 30.8 13.5 99 33-136 129-233 (258)
179 2qzs_A Glycogen synthase; glyc 63.3 53 0.0018 34.1 12.0 107 31-151 321-439 (485)
180 3usb_A Inosine-5'-monophosphat 63.2 24 0.00083 38.6 9.6 68 63-135 256-324 (511)
181 3c48_A Predicted glycosyltrans 62.9 32 0.0011 35.1 10.0 109 31-153 276-391 (438)
182 4gud_A Imidazole glycerol phos 62.5 16 0.00055 34.4 7.1 46 30-83 1-46 (211)
183 2z6i_A Trans-2-enoyl-ACP reduc 62.4 49 0.0017 33.8 11.2 81 50-136 105-191 (332)
184 3qz6_A HPCH/HPAI aldolase; str 62.3 57 0.002 32.4 11.5 101 47-150 6-110 (261)
185 3s83_A Ggdef family protein; s 62.1 19 0.00064 34.9 7.7 100 47-149 144-254 (259)
186 4avf_A Inosine-5'-monophosphat 61.9 1.1E+02 0.0039 33.0 14.7 102 31-136 241-361 (490)
187 4dzz_A Plasmid partitioning pr 61.5 17 0.00059 33.2 7.0 70 26-100 25-96 (206)
188 3ovp_A Ribulose-phosphate 3-ep 61.0 13 0.00043 36.5 6.2 108 22-136 79-197 (228)
189 1vzw_A Phosphoribosyl isomeras 60.9 34 0.0012 32.8 9.3 80 63-147 147-239 (244)
190 4eyg_A Twin-arginine transloca 60.4 51 0.0017 32.6 10.8 86 32-121 140-237 (368)
191 3bul_A Methionine synthase; tr 59.9 32 0.0011 38.4 9.9 111 31-150 98-222 (579)
192 3mz0_A Inositol 2-dehydrogenas 59.7 50 0.0017 33.4 10.7 108 30-153 1-116 (344)
193 2iw1_A Lipopolysaccharide core 59.6 31 0.0011 34.0 9.1 106 31-152 228-336 (374)
194 1ep3_A Dihydroorotate dehydrog 59.5 49 0.0017 32.8 10.5 104 43-151 152-291 (311)
195 1h1y_A D-ribulose-5-phosphate 59.1 42 0.0014 32.2 9.6 109 23-136 80-201 (228)
196 2y88_A Phosphoribosyl isomeras 58.4 31 0.0011 33.0 8.5 77 64-145 151-240 (244)
197 1jcn_A Inosine monophosphate d 58.2 88 0.003 33.8 13.0 103 30-138 266-390 (514)
198 3sc6_A DTDP-4-dehydrorhamnose 57.6 24 0.00081 34.1 7.6 81 30-116 4-107 (287)
199 4hkt_A Inositol 2-dehydrogenas 57.3 54 0.0018 32.8 10.4 106 30-153 2-113 (331)
200 1vgv_A UDP-N-acetylglucosamine 57.2 54 0.0019 32.6 10.4 101 31-152 238-341 (384)
201 1h5y_A HISF; histidine biosynt 56.2 49 0.0017 31.3 9.5 79 64-147 156-244 (253)
202 3ohs_X Trans-1,2-dihydrobenzen 56.0 36 0.0012 34.3 8.9 108 30-153 1-116 (334)
203 2l69_A Rossmann 2X3 fold prote 55.8 53 0.0018 28.3 8.3 43 30-72 1-43 (134)
204 3ic5_A Putative saccharopine d 55.7 38 0.0013 27.7 7.6 54 30-86 4-58 (118)
205 2xxa_A Signal recognition part 55.1 26 0.00089 37.5 7.9 53 31-85 129-191 (433)
206 2fhp_A Methylase, putative; al 55.1 83 0.0028 27.8 10.4 71 30-100 66-139 (187)
207 3l9w_A Glutathione-regulated p 54.8 35 0.0012 36.2 8.8 99 26-135 22-121 (413)
208 4e5v_A Putative THUA-like prot 54.6 21 0.00071 36.1 6.7 80 31-115 4-94 (281)
209 1rd5_A Tryptophan synthase alp 54.2 22 0.00075 34.9 6.7 42 92-136 189-230 (262)
210 1v4v_A UDP-N-acetylglucosamine 54.1 1E+02 0.0035 30.6 11.9 101 31-152 230-333 (376)
211 1dxe_A 2-dehydro-3-deoxy-galac 54.0 1.7E+02 0.0057 28.7 13.6 100 47-149 10-112 (256)
212 1yxy_A Putative N-acetylmannos 53.7 58 0.002 31.0 9.5 85 44-136 121-215 (234)
213 4adt_A Pyridoxine biosynthetic 53.7 90 0.0031 31.8 11.3 87 58-150 129-257 (297)
214 3ia7_A CALG4; glycosysltransfe 53.7 32 0.0011 34.5 8.1 16 47-62 24-39 (402)
215 1j8m_F SRP54, signal recogniti 53.1 28 0.00096 35.1 7.5 56 28-85 123-188 (297)
216 4had_A Probable oxidoreductase 52.6 32 0.0011 34.8 7.8 112 24-151 16-134 (350)
217 1vc4_A Indole-3-glycerol phosp 51.9 22 0.00077 35.2 6.4 98 33-136 131-236 (254)
218 2tps_A Protein (thiamin phosph 51.7 48 0.0017 31.2 8.5 70 61-136 123-200 (227)
219 3qhp_A Type 1 capsular polysac 51.7 51 0.0018 28.6 8.2 108 30-153 31-140 (166)
220 2xci_A KDO-transferase, 3-deox 51.5 48 0.0016 34.0 9.0 111 31-153 225-346 (374)
221 2w6r_A Imidazole glycerol phos 51.4 32 0.0011 33.4 7.4 69 63-136 31-103 (266)
222 2jjm_A Glycosyl transferase, g 51.3 25 0.00087 35.4 6.9 107 31-152 241-349 (394)
223 3nav_A Tryptophan synthase alp 50.5 17 0.00059 36.6 5.3 58 91-150 83-146 (271)
224 1h5y_A HISF; histidine biosynt 50.3 53 0.0018 31.0 8.6 69 62-135 33-105 (253)
225 4fxs_A Inosine-5'-monophosphat 50.0 2E+02 0.0069 31.1 14.1 102 31-136 243-363 (496)
226 3okp_A GDP-mannose-dependent a 49.9 41 0.0014 33.4 8.1 107 31-152 229-343 (394)
227 3ec7_A Putative dehydrogenase; 49.1 61 0.0021 33.1 9.4 107 31-153 23-137 (357)
228 1i4n_A Indole-3-glycerol phosp 48.6 1.1E+02 0.0036 30.5 10.6 89 43-136 138-230 (251)
229 3l4e_A Uncharacterized peptida 48.3 63 0.0021 30.9 8.7 64 31-102 27-100 (206)
230 1p0k_A Isopentenyl-diphosphate 48.2 1.8E+02 0.0061 29.6 12.8 88 44-136 167-280 (349)
231 2lci_A Protein OR36; structura 47.8 42 0.0014 28.9 6.4 26 33-58 53-78 (134)
232 3snr_A Extracellular ligand-bi 47.7 57 0.002 31.9 8.7 86 32-123 136-232 (362)
233 2ho3_A Oxidoreductase, GFO/IDH 47.7 1E+02 0.0034 30.7 10.6 103 32-151 2-110 (325)
234 1f0k_A MURG, UDP-N-acetylgluco 47.5 52 0.0018 32.5 8.4 35 28-62 3-41 (364)
235 1thf_D HISF protein; thermophI 47.4 80 0.0027 30.2 9.5 69 63-136 31-103 (253)
236 1uf3_A Hypothetical protein TT 47.2 38 0.0013 31.1 6.9 70 27-119 1-75 (228)
237 3p3v_A PTS system, N-acetylgal 47.1 40 0.0014 31.5 6.9 56 14-73 16-74 (163)
238 1tqx_A D-ribulose-5-phosphate 46.8 30 0.001 33.9 6.2 83 50-136 109-201 (227)
239 2p10_A MLL9387 protein; putati 46.8 1.1E+02 0.0038 31.1 10.5 82 52-136 160-259 (286)
240 2nvw_A Galactose/lactose metab 46.7 1E+02 0.0035 33.1 11.1 123 14-151 21-162 (479)
241 3sgz_A Hydroxyacid oxidase 2; 46.7 1.1E+02 0.0039 31.8 11.0 88 45-136 207-301 (352)
242 1wa3_A 2-keto-3-deoxy-6-phosph 46.5 28 0.00096 32.5 5.8 65 63-135 113-177 (205)
243 3kts_A Glycerol uptake operon 46.4 46 0.0016 32.0 7.3 78 49-135 95-178 (192)
244 1qop_A Tryptophan synthase alp 46.3 63 0.0022 31.9 8.7 96 34-136 126-234 (268)
245 1ypf_A GMP reductase; GUAC, pu 46.2 2.5E+02 0.0086 28.5 14.5 98 32-136 121-239 (336)
246 2fpo_A Methylase YHHF; structu 46.1 1.1E+02 0.0037 28.2 9.9 68 31-101 77-146 (202)
247 4gmf_A Yersiniabactin biosynth 45.9 67 0.0023 33.5 9.2 106 31-154 7-119 (372)
248 3rc1_A Sugar 3-ketoreductase; 45.9 1E+02 0.0034 31.3 10.4 106 31-153 27-139 (350)
249 4fyk_A Deoxyribonucleoside 5'- 45.8 68 0.0023 29.6 8.1 112 30-152 1-141 (152)
250 1zh8_A Oxidoreductase; TM0312, 45.5 98 0.0034 31.2 10.2 107 30-152 17-131 (340)
251 3jy6_A Transcriptional regulat 45.3 85 0.0029 29.8 9.3 63 44-116 26-94 (276)
252 3inp_A D-ribulose-phosphate 3- 45.3 14 0.00048 36.8 3.7 86 47-136 126-223 (246)
253 1rd5_A Tryptophan synthase alp 44.9 27 0.00091 34.3 5.6 55 92-150 82-139 (262)
254 1gox_A (S)-2-hydroxy-acid oxid 44.2 1.2E+02 0.004 31.5 10.8 89 44-136 214-309 (370)
255 3p9n_A Possible methyltransfer 44.1 1.4E+02 0.0049 26.7 10.2 84 29-114 65-153 (189)
256 2fn9_A Ribose ABC transporter, 44.0 1.4E+02 0.0049 28.2 10.7 66 44-116 21-92 (290)
257 1pii_A N-(5'phosphoribosyl)ant 43.6 1.3E+02 0.0045 32.5 11.2 87 44-136 146-236 (452)
258 1qdl_B Protein (anthranilate s 43.4 11 0.00037 35.4 2.4 48 34-83 4-51 (195)
259 4fxs_A Inosine-5'-monophosphat 43.4 53 0.0018 35.7 8.2 66 64-135 233-299 (496)
260 2r60_A Glycosyl transferase, g 43.3 75 0.0026 33.2 9.2 95 44-152 321-423 (499)
261 2fli_A Ribulose-phosphate 3-ep 43.3 58 0.002 30.5 7.6 85 48-136 102-198 (220)
262 3iwp_A Copper homeostasis prot 42.8 90 0.0031 31.8 9.2 88 59-150 44-151 (287)
263 3tdn_A FLR symmetric alpha-bet 42.5 62 0.0021 31.2 7.8 69 63-136 36-108 (247)
264 3o07_A Pyridoxine biosynthesis 42.3 43 0.0015 34.2 6.6 59 92-153 186-251 (291)
265 4fb5_A Probable oxidoreductase 41.9 1.1E+02 0.0039 30.7 10.0 112 25-152 18-143 (393)
266 1vrd_A Inosine-5'-monophosphat 41.8 2.2E+02 0.0076 30.3 12.8 102 32-136 250-369 (494)
267 1z0s_A Probable inorganic poly 41.7 15 0.00052 37.2 3.3 93 32-152 30-122 (278)
268 3e9m_A Oxidoreductase, GFO/IDH 41.6 61 0.0021 32.6 7.8 108 31-152 5-116 (330)
269 3m2p_A UDP-N-acetylglucosamine 41.5 1.4E+02 0.0048 29.0 10.4 32 30-61 1-32 (311)
270 1wa3_A 2-keto-3-deoxy-6-phosph 41.5 1.9E+02 0.0064 26.7 10.8 66 78-148 36-101 (205)
271 2nli_A Lactate oxidase; flavoe 41.3 1.2E+02 0.0041 31.6 10.3 90 43-136 217-313 (368)
272 2qfm_A Spermine synthase; sper 41.2 1.4E+02 0.0048 31.3 10.7 69 31-99 211-296 (364)
273 3ajx_A 3-hexulose-6-phosphate 41.0 16 0.00053 34.3 3.1 84 63-150 11-99 (207)
274 3td9_A Branched chain amino ac 40.7 1.3E+02 0.0045 29.6 10.2 85 32-122 150-245 (366)
275 1tqj_A Ribulose-phosphate 3-ep 40.5 43 0.0015 32.4 6.3 83 63-151 18-109 (230)
276 1f0k_A MURG, UDP-N-acetylgluco 39.6 73 0.0025 31.4 8.0 103 31-150 212-322 (364)
277 1i1q_B Anthranilate synthase c 39.3 34 0.0012 31.8 5.2 51 32-83 1-54 (192)
278 3moi_A Probable dehydrogenase; 39.2 94 0.0032 32.0 9.0 107 30-153 1-114 (387)
279 1jvn_A Glutamine, bifunctional 39.2 1.4E+02 0.0048 32.8 10.9 79 65-148 455-544 (555)
280 3r2g_A Inosine 5'-monophosphat 38.8 85 0.0029 32.9 8.6 65 66-135 103-168 (361)
281 1zco_A 2-dehydro-3-deoxyphosph 38.7 1.7E+02 0.0057 29.1 10.4 78 66-150 148-255 (262)
282 1x1o_A Nicotinate-nucleotide p 38.5 1.9E+02 0.0064 29.2 10.8 92 34-135 169-267 (286)
283 1tqj_A Ribulose-phosphate 3-ep 38.2 51 0.0018 31.9 6.4 86 47-136 104-201 (230)
284 2x6q_A Trehalose-synthase TRET 37.6 3.2E+02 0.011 27.3 12.6 106 31-152 262-378 (416)
285 1ka9_H Imidazole glycerol phos 37.3 33 0.0011 32.0 4.7 34 30-63 1-34 (200)
286 4avf_A Inosine-5'-monophosphat 37.3 92 0.0032 33.7 8.9 67 64-135 230-297 (490)
287 3ceu_A Thiamine phosphate pyro 37.2 38 0.0013 32.1 5.2 70 60-135 94-171 (210)
288 2f6u_A GGGPS, (S)-3-O-geranylg 36.9 65 0.0022 31.7 6.9 58 65-136 23-84 (234)
289 1iow_A DD-ligase, DDLB, D-ALA\ 36.8 20 0.00067 35.1 3.2 54 30-85 1-62 (306)
290 1rpx_A Protein (ribulose-phosp 36.7 32 0.0011 32.8 4.6 58 78-136 141-207 (230)
291 3iwt_A 178AA long hypothetical 36.7 65 0.0022 29.6 6.6 44 41-84 39-88 (178)
292 4gnr_A ABC transporter substra 36.7 1.7E+02 0.0058 28.7 10.2 89 33-127 146-242 (353)
293 1izc_A Macrophomate synthase i 36.6 2.7E+02 0.0091 28.7 11.9 86 63-150 51-139 (339)
294 3i23_A Oxidoreductase, GFO/IDH 36.5 46 0.0016 33.8 6.1 108 30-152 1-114 (349)
295 3gjy_A Spermidine synthase; AP 36.4 97 0.0033 31.8 8.4 70 30-101 112-188 (317)
296 1ujp_A Tryptophan synthase alp 36.3 72 0.0025 31.9 7.3 95 34-136 123-229 (271)
297 2yw3_A 4-hydroxy-2-oxoglutarat 36.1 1.1E+02 0.0037 29.1 8.3 89 54-151 103-198 (207)
298 3k4h_A Putative transcriptiona 35.9 92 0.0032 29.6 7.8 65 43-116 31-101 (292)
299 2ydy_A Methionine adenosyltran 35.8 1.1E+02 0.0036 29.8 8.4 33 30-62 1-33 (315)
300 1kbi_A Cytochrome B2, L-LCR; f 35.7 1.1E+02 0.0038 33.4 9.3 89 44-136 332-432 (511)
301 1ws6_A Methyltransferase; stru 35.5 1.6E+02 0.0056 25.3 8.9 73 27-100 59-132 (171)
302 2px0_A Flagellar biosynthesis 35.5 72 0.0025 32.0 7.2 60 30-92 133-195 (296)
303 2nzl_A Hydroxyacid oxidase 1; 35.5 1.2E+02 0.0041 31.9 9.2 88 45-136 242-336 (392)
304 3ius_A Uncharacterized conserv 35.5 31 0.0011 33.2 4.4 54 30-86 4-57 (286)
305 2gjl_A Hypothetical protein PA 35.4 2.6E+02 0.0088 28.1 11.5 62 63-136 84-145 (328)
306 2r6o_A Putative diguanylate cy 35.4 84 0.0029 31.4 7.7 100 47-149 168-278 (294)
307 3i45_A Twin-arginine transloca 34.9 1.8E+02 0.0062 29.0 10.2 80 32-115 143-235 (387)
308 2p9j_A Hypothetical protein AQ 34.9 2.2E+02 0.0076 24.5 9.7 41 93-137 42-82 (162)
309 3qk7_A Transcriptional regulat 34.7 1.2E+02 0.004 29.2 8.5 68 40-116 22-97 (294)
310 2gk3_A Putative cytoplasmic pr 34.7 1.2E+02 0.0043 29.6 8.7 63 46-116 44-127 (256)
311 3euw_A MYO-inositol dehydrogen 34.7 1.7E+02 0.0057 29.3 9.9 104 31-151 4-113 (344)
312 3oti_A CALG3; calicheamicin, T 34.4 84 0.0029 31.8 7.6 32 31-62 20-55 (398)
313 3q2i_A Dehydrogenase; rossmann 34.4 1.5E+02 0.005 29.9 9.4 106 31-153 13-125 (354)
314 2iuy_A Avigt4, glycosyltransfe 34.1 81 0.0028 30.9 7.2 55 32-88 4-95 (342)
315 1wl8_A GMP synthase [glutamine 34.1 30 0.001 32.0 3.8 77 34-115 3-80 (189)
316 3bbl_A Regulatory protein of L 34.1 1.8E+02 0.0061 27.7 9.6 66 42-116 25-96 (287)
317 3db2_A Putative NADPH-dependen 34.0 1.1E+02 0.0037 30.9 8.4 107 30-153 4-116 (354)
318 4fzr_A SSFS6; structural genom 33.7 81 0.0028 31.8 7.4 73 31-114 15-151 (398)
319 3lkb_A Probable branched-chain 33.3 1.6E+02 0.0055 29.4 9.5 85 32-122 144-239 (392)
320 2iuy_A Avigt4, glycosyltransfe 33.0 65 0.0022 31.6 6.3 106 31-151 188-306 (342)
321 1o2d_A Alcohol dehydrogenase, 33.0 92 0.0031 32.2 7.7 80 31-115 40-148 (371)
322 3pfn_A NAD kinase; structural 32.7 59 0.002 34.2 6.2 112 19-154 30-165 (365)
323 3sg0_A Extracellular ligand-bi 32.7 90 0.0031 30.9 7.4 86 32-123 160-256 (386)
324 3h5l_A Putative branched-chain 32.3 1.2E+02 0.0043 30.7 8.6 85 32-121 165-260 (419)
325 3sr7_A Isopentenyl-diphosphate 32.2 3.1E+02 0.01 28.6 11.6 87 45-136 196-307 (365)
326 4fo4_A Inosine 5'-monophosphat 32.1 2.4E+02 0.0082 29.4 10.7 66 65-135 110-176 (366)
327 3kwp_A Predicted methyltransfe 32.0 2.6E+02 0.0088 28.2 10.7 94 33-135 43-145 (296)
328 3tr6_A O-methyltransferase; ce 31.6 2.7E+02 0.0093 25.4 10.2 68 31-100 89-161 (225)
329 3d54_D Phosphoribosylformylgly 31.3 37 0.0013 31.6 4.0 46 30-83 1-47 (213)
330 3ot5_A UDP-N-acetylglucosamine 31.3 2.5E+02 0.0084 29.0 10.7 101 31-152 257-360 (403)
331 1viz_A PCRB protein homolog; s 31.2 75 0.0026 31.4 6.3 59 65-136 23-84 (240)
332 3ctl_A D-allulose-6-phosphate 31.1 75 0.0026 31.0 6.3 88 45-136 96-195 (231)
333 3l49_A ABC sugar (ribose) tran 30.8 2.5E+02 0.0084 26.5 10.0 67 43-116 23-95 (291)
334 1me8_A Inosine-5'-monophosphat 30.6 89 0.003 33.9 7.4 69 62-135 241-311 (503)
335 3rot_A ABC sugar transporter, 30.6 1.1E+02 0.0038 29.3 7.5 67 44-117 22-96 (297)
336 1xea_A Oxidoreductase, GFO/IDH 30.6 1.4E+02 0.0049 29.6 8.5 105 30-151 1-111 (323)
337 4eg0_A D-alanine--D-alanine li 30.6 39 0.0013 33.7 4.2 57 27-85 9-73 (317)
338 3l6u_A ABC-type sugar transpor 30.5 1.2E+02 0.0041 28.8 7.6 67 44-117 27-99 (293)
339 4h08_A Putative hydrolase; GDS 30.5 1.9E+02 0.0066 25.9 8.8 79 32-115 21-119 (200)
340 3o9z_A Lipopolysaccaride biosy 30.5 88 0.003 31.4 6.9 111 31-153 3-122 (312)
341 3duw_A OMT, O-methyltransferas 30.4 3.1E+02 0.011 24.9 12.3 80 31-114 83-166 (223)
342 1k1e_A Deoxy-D-mannose-octulos 30.4 2.9E+02 0.01 24.6 10.1 48 93-144 41-88 (180)
343 3f4w_A Putative hexulose 6 pho 30.4 50 0.0017 30.8 4.8 84 63-150 11-99 (211)
344 1me8_A Inosine-5'-monophosphat 30.3 3.1E+02 0.01 29.6 11.6 102 30-136 253-381 (503)
345 1sui_A Caffeoyl-COA O-methyltr 30.2 3.6E+02 0.012 25.6 11.3 69 31-101 104-178 (247)
346 2vpi_A GMP synthase; guanine m 30.1 28 0.00097 33.4 3.0 37 26-62 19-55 (218)
347 1kjq_A GART 2, phosphoribosylg 30.1 99 0.0034 31.4 7.3 33 29-62 9-41 (391)
348 3hcw_A Maltose operon transcri 30.0 1.5E+02 0.005 28.5 8.2 69 39-116 23-100 (295)
349 2cvh_A DNA repair and recombin 30.0 73 0.0025 29.1 5.8 86 31-116 45-155 (220)
350 3dm5_A SRP54, signal recogniti 30.0 1.8E+02 0.0062 31.2 9.6 105 27-136 124-248 (443)
351 3uuw_A Putative oxidoreductase 29.9 1.4E+02 0.0047 29.4 8.2 106 31-153 6-116 (308)
352 3h2s_A Putative NADH-flavin re 29.6 79 0.0027 29.0 5.9 57 32-90 1-57 (224)
353 3lp8_A Phosphoribosylamine-gly 29.5 1.2E+02 0.004 32.1 8.0 53 30-84 20-90 (442)
354 2d00_A V-type ATP synthase sub 29.5 2.1E+02 0.0073 24.6 8.3 74 32-115 4-80 (109)
355 3hut_A Putative branched-chain 29.4 1.9E+02 0.0066 28.2 9.2 86 32-123 140-236 (358)
356 1vr6_A Phospho-2-dehydro-3-deo 29.3 1.6E+02 0.0056 30.7 8.8 69 63-138 228-313 (350)
357 1vcf_A Isopentenyl-diphosphate 29.3 2.3E+02 0.0079 28.6 9.9 47 90-138 241-288 (332)
358 4hjf_A Ggdef family protein; s 29.3 82 0.0028 32.2 6.5 103 47-152 217-330 (340)
359 3oqb_A Oxidoreductase; structu 29.2 1.2E+02 0.0043 30.8 7.9 37 116-152 94-132 (383)
360 3tb6_A Arabinose metabolism tr 29.2 1.9E+02 0.0066 27.2 8.9 69 42-116 32-108 (298)
361 3vk5_A MOEO5; TIM barrel, tran 29.2 1.2E+02 0.004 31.0 7.4 57 78-136 200-256 (286)
362 3ffs_A Inosine-5-monophosphate 29.2 1.1E+02 0.0037 32.6 7.5 65 65-135 146-211 (400)
363 4gj1_A 1-(5-phosphoribosyl)-5- 29.1 2.5E+02 0.0087 27.2 9.8 80 64-147 153-241 (243)
364 2ffh_A Protein (FFH); SRP54, s 29.0 3.6E+02 0.012 28.6 11.7 57 27-85 122-188 (425)
365 2gek_A Phosphatidylinositol ma 28.9 1.1E+02 0.0037 30.4 7.3 31 31-61 20-58 (406)
366 3kux_A Putative oxidoreductase 28.9 2E+02 0.0069 28.9 9.4 105 31-152 7-116 (352)
367 3evn_A Oxidoreductase, GFO/IDH 28.9 67 0.0023 32.2 5.7 106 31-152 5-116 (329)
368 3ajx_A 3-hexulose-6-phosphate 28.8 1.6E+02 0.0053 27.2 7.9 98 31-135 77-185 (207)
369 2avd_A Catechol-O-methyltransf 28.5 3.1E+02 0.01 25.1 10.0 68 31-100 94-166 (229)
370 3u81_A Catechol O-methyltransf 28.5 1.6E+02 0.0055 27.2 8.0 59 31-89 83-146 (221)
371 3lop_A Substrate binding perip 28.5 1.1E+02 0.0037 30.3 7.1 80 33-118 143-233 (364)
372 1p4c_A L(+)-mandelate dehydrog 28.5 1.5E+02 0.0052 30.9 8.5 88 43-136 213-307 (380)
373 1g3q_A MIND ATPase, cell divis 28.4 18 0.00062 34.0 1.3 17 26-42 26-42 (237)
374 3tfw_A Putative O-methyltransf 28.3 2.2E+02 0.0075 27.0 9.1 80 31-115 88-170 (248)
375 3oa2_A WBPB; oxidoreductase, s 28.3 1.1E+02 0.0037 30.7 7.2 113 31-153 3-123 (318)
376 4gqa_A NAD binding oxidoreduct 28.1 2.6E+02 0.009 28.7 10.3 106 31-152 26-145 (412)
377 3vkj_A Isopentenyl-diphosphate 28.1 4E+02 0.014 27.7 11.6 88 43-136 175-296 (368)
378 1qpo_A Quinolinate acid phosph 28.0 2.6E+02 0.0088 28.2 9.8 95 34-135 168-268 (284)
379 3e3m_A Transcriptional regulat 27.8 1.3E+02 0.0045 29.9 7.6 63 43-114 88-156 (355)
380 3tqv_A Nicotinate-nucleotide p 27.8 1.1E+02 0.0039 31.0 7.1 69 78-150 169-239 (287)
381 2ift_A Putative methylase HI07 27.6 1.4E+02 0.0049 27.4 7.4 69 31-101 76-149 (201)
382 1jcn_A Inosine monophosphate d 27.5 1.8E+02 0.006 31.4 9.1 67 64-135 256-323 (514)
383 3oy2_A Glycosyltransferase B73 27.5 1E+02 0.0035 31.0 6.8 107 31-152 215-354 (413)
384 3dr5_A Putative O-methyltransf 27.3 80 0.0028 29.9 5.7 66 31-100 81-150 (221)
385 3q9l_A Septum site-determining 27.3 27 0.00092 33.2 2.2 16 26-41 26-41 (260)
386 2h6r_A Triosephosphate isomera 27.2 2.9E+02 0.01 26.2 9.7 100 31-136 82-199 (219)
387 4ew6_A D-galactose-1-dehydroge 27.1 62 0.0021 32.7 5.1 102 31-153 25-131 (330)
388 1ble_A Fructose permease; phos 27.1 1.3E+02 0.0044 27.9 6.8 57 14-73 13-72 (163)
389 1p9l_A Dihydrodipicolinate red 27.0 4.5E+02 0.015 25.6 12.1 75 32-115 1-77 (245)
390 3dzc_A UDP-N-acetylglucosamine 26.8 2E+02 0.0069 29.5 9.1 101 31-152 263-366 (396)
391 3e82_A Putative oxidoreductase 26.8 1.4E+02 0.0046 30.5 7.7 103 31-152 7-116 (364)
392 3e18_A Oxidoreductase; dehydro 26.8 1.5E+02 0.0052 30.1 8.1 106 31-153 5-115 (359)
393 2dwc_A PH0318, 433AA long hypo 26.7 1.2E+02 0.0042 31.4 7.4 32 30-62 18-49 (433)
394 3hm2_A Precorrin-6Y C5,15-meth 26.5 1E+02 0.0035 27.0 5.9 65 31-101 49-115 (178)
395 3cea_A MYO-inositol 2-dehydrog 26.3 2.9E+02 0.0099 27.4 10.0 105 31-150 8-118 (346)
396 4ef8_A Dihydroorotate dehydrog 26.3 1.2E+02 0.004 31.7 7.1 59 93-153 265-330 (354)
397 4htf_A S-adenosylmethionine-de 26.3 1E+02 0.0035 29.7 6.3 77 23-102 82-162 (285)
398 3m2t_A Probable dehydrogenase; 26.2 1.7E+02 0.0059 29.6 8.4 107 31-152 5-117 (359)
399 3c3y_A Pfomt, O-methyltransfer 26.2 2.1E+02 0.0071 27.1 8.4 68 31-100 95-168 (237)
400 2rgy_A Transcriptional regulat 26.2 2.6E+02 0.0089 26.6 9.2 65 43-116 26-99 (290)
401 2xw6_A MGS, methylglyoxal synt 26.1 1E+02 0.0036 27.8 5.8 52 67-126 66-122 (134)
402 2dri_A D-ribose-binding protei 26.0 2.2E+02 0.0074 26.8 8.5 64 44-115 20-90 (271)
403 3huu_A Transcription regulator 26.0 2E+02 0.0069 27.6 8.5 64 44-116 46-115 (305)
404 1ujp_A Tryptophan synthase alp 25.9 54 0.0019 32.8 4.3 55 93-150 80-140 (271)
405 2qr6_A IMP dehydrogenase/GMP r 25.9 3.5E+02 0.012 27.9 10.8 88 46-136 202-306 (393)
406 1fy2_A Aspartyl dipeptidase; s 25.7 1.5E+02 0.0051 28.5 7.3 70 23-101 24-99 (229)
407 2fep_A Catabolite control prot 25.7 2.1E+02 0.0073 27.2 8.6 65 43-116 34-104 (289)
408 2esr_A Methyltransferase; stru 25.7 1.8E+02 0.0061 25.5 7.4 67 31-100 54-123 (177)
409 3kjx_A Transcriptional regulat 25.6 1.8E+02 0.0063 28.6 8.2 64 42-114 85-154 (344)
410 3p3b_A Mandelate racemase/muco 25.5 1E+02 0.0035 32.1 6.5 82 63-148 213-299 (392)
411 3abi_A Putative uncharacterize 25.5 1.9E+02 0.0064 29.5 8.5 95 27-135 12-106 (365)
412 3b0p_A TRNA-dihydrouridine syn 25.5 3.3E+02 0.011 27.8 10.4 41 93-136 185-225 (350)
413 3kl4_A SRP54, signal recogniti 25.5 3.2E+02 0.011 29.1 10.5 104 28-136 122-247 (433)
414 3gv0_A Transcriptional regulat 25.3 1.3E+02 0.0045 28.7 6.9 67 41-116 23-98 (288)
415 3khj_A Inosine-5-monophosphate 25.2 3.6E+02 0.012 27.9 10.6 65 65-135 107-172 (361)
416 3e8x_A Putative NAD-dependent 25.2 73 0.0025 29.7 4.9 60 25-86 15-75 (236)
417 2i2c_A Probable inorganic poly 25.2 1.7E+02 0.0056 28.9 7.7 87 33-153 2-93 (272)
418 3gnn_A Nicotinate-nucleotide p 25.2 3.4E+02 0.012 27.7 10.1 67 58-134 213-279 (298)
419 1zfj_A Inosine monophosphate d 25.1 2E+02 0.0068 30.7 8.9 108 23-135 176-301 (491)
420 3c6k_A Spermine synthase; sper 25.1 1.6E+02 0.0055 31.1 7.9 58 31-88 228-295 (381)
421 2yxd_A Probable cobalt-precorr 25.0 3.3E+02 0.011 23.4 12.2 78 26-114 52-131 (183)
422 1qap_A Quinolinic acid phospho 25.0 5.3E+02 0.018 26.0 11.5 93 33-135 181-279 (296)
423 2i7c_A Spermidine synthase; tr 25.0 2.2E+02 0.0074 28.0 8.5 68 31-101 102-180 (283)
424 3s4y_A Thiamin pyrophosphokina 24.9 1.9E+02 0.0065 28.4 8.0 73 31-114 21-98 (247)
425 1ls1_A Signal recognition part 24.9 4.3E+02 0.015 26.1 10.9 62 29-92 124-196 (295)
426 3l0g_A Nicotinate-nucleotide p 24.9 1.6E+02 0.0055 30.2 7.5 67 58-134 211-277 (300)
427 1vs1_A 3-deoxy-7-phosphoheptul 24.8 1.3E+02 0.0043 30.4 6.7 84 63-150 160-270 (276)
428 1mjf_A Spermidine synthase; sp 24.7 2.5E+02 0.0085 27.5 8.9 66 31-101 98-181 (281)
429 3sz8_A 2-dehydro-3-deoxyphosph 24.7 2.2E+02 0.0075 28.9 8.5 84 51-140 130-246 (285)
430 3o74_A Fructose transport syst 24.7 1.5E+02 0.0051 27.7 7.1 66 44-117 21-92 (272)
431 2ioy_A Periplasmic sugar-bindi 24.6 2.2E+02 0.0076 26.9 8.4 64 44-115 20-90 (283)
432 3qja_A IGPS, indole-3-glycerol 24.5 3E+02 0.01 27.3 9.5 59 90-151 98-159 (272)
433 2hfv_A Hypothetical protein RP 24.4 1.4E+02 0.0049 25.5 6.0 67 31-130 22-89 (97)
434 2cu0_A Inosine-5'-monophosphat 24.2 3.5E+02 0.012 28.9 10.6 46 88-136 312-357 (486)
435 2glx_A 1,5-anhydro-D-fructose 24.2 2.6E+02 0.009 27.5 9.1 103 32-151 1-110 (332)
436 4g92_A HAPB protein; transcrip 24.1 1E+02 0.0036 24.5 4.6 27 558-584 36-63 (64)
437 1vlj_A NADH-dependent butanol 24.0 3.2E+02 0.011 28.4 10.1 79 32-115 44-151 (407)
438 3bzb_A Uncharacterized protein 24.0 4.3E+02 0.015 25.5 10.5 68 32-101 103-188 (281)
439 2fvy_A D-galactose-binding per 24.0 2.4E+02 0.0081 26.8 8.5 67 43-117 20-94 (309)
440 1vma_A Cell division protein F 23.9 4.4E+02 0.015 26.4 10.8 54 30-85 131-194 (306)
441 3ipc_A ABC transporter, substr 23.9 1.5E+02 0.0053 28.9 7.2 85 32-122 139-234 (356)
442 1usg_A Leucine-specific bindin 23.9 2.2E+02 0.0074 27.6 8.3 81 32-118 139-230 (346)
443 3dqp_A Oxidoreductase YLBE; al 23.9 3.6E+02 0.012 24.4 9.5 29 33-61 2-30 (219)
444 1ydw_A AX110P-like protein; st 23.9 3.1E+02 0.011 27.5 9.8 107 31-150 6-118 (362)
445 2vsy_A XCC0866; transferase, g 23.9 2.6E+02 0.0089 29.5 9.5 116 23-152 397-521 (568)
446 3sho_A Transcriptional regulat 23.7 3.8E+02 0.013 23.9 9.4 96 32-138 40-140 (187)
447 1t0b_A THUA-like protein; treh 23.6 2E+02 0.0068 28.2 7.9 77 31-113 7-103 (252)
448 3egc_A Putative ribose operon 23.5 1.3E+02 0.0043 28.7 6.4 66 43-117 26-97 (291)
449 3llv_A Exopolyphosphatase-rela 23.4 3.4E+02 0.011 22.9 10.8 93 29-134 27-121 (141)
450 3nkl_A UDP-D-quinovosamine 4-d 23.4 3E+02 0.01 23.3 8.3 31 32-62 5-35 (141)
451 2hnk_A SAM-dependent O-methylt 23.4 2.3E+02 0.0079 26.4 8.1 69 31-101 85-169 (239)
452 2nv1_A Pyridoxal biosynthesis 23.1 72 0.0025 32.0 4.6 42 92-136 195-238 (305)
453 3c85_A Putative glutathione-re 23.1 3.8E+02 0.013 23.8 9.3 26 107-134 132-157 (183)
454 3tj4_A Mandelate racemase; eno 23.1 3.1E+02 0.01 28.2 9.6 97 43-144 183-286 (372)
455 3m9w_A D-xylose-binding peripl 23.1 2.8E+02 0.0096 26.6 8.9 68 42-116 19-92 (313)
456 3l0g_A Nicotinate-nucleotide p 23.0 1.5E+02 0.0053 30.3 7.0 53 94-150 196-248 (300)
457 1vli_A Spore coat polysacchari 23.0 4.3E+02 0.015 27.9 10.6 80 65-152 174-278 (385)
458 3e05_A Precorrin-6Y C5,15-meth 22.9 1.5E+02 0.0052 26.8 6.6 65 31-101 64-130 (204)
459 2qjg_A Putative aldolase MJ040 22.9 3E+02 0.01 26.5 9.1 75 69-152 173-258 (273)
460 3cbg_A O-methyltransferase; cy 22.9 2.4E+02 0.0081 26.5 8.1 67 32-100 98-169 (232)
461 1l3i_A Precorrin-6Y methyltran 22.9 2.4E+02 0.0084 24.5 7.8 69 27-101 51-122 (192)
462 3r75_A Anthranilate/para-amino 22.8 93 0.0032 35.1 5.9 74 31-114 446-528 (645)
463 1es9_A PAF-AH, platelet-activa 22.8 3.8E+02 0.013 24.6 9.4 83 30-116 37-139 (232)
464 3njr_A Precorrin-6Y methylase; 22.8 2.1E+02 0.0072 26.3 7.6 69 25-101 71-142 (204)
465 2px2_A Genome polyprotein [con 22.8 89 0.003 31.6 5.0 58 77-150 139-198 (269)
466 2d59_A Hypothetical protein PH 22.7 1.2E+02 0.0041 26.9 5.6 102 23-131 15-126 (144)
467 3lfj_A Manxb, phosphotransfera 22.7 1.1E+02 0.0039 29.1 5.6 56 16-74 35-93 (187)
468 2gl5_A Putative dehydratase pr 22.7 1.9E+02 0.0065 30.0 7.9 77 63-144 230-307 (410)
469 1uir_A Polyamine aminopropyltr 22.7 2.1E+02 0.0072 28.6 8.0 69 31-102 101-184 (314)
470 4e38_A Keto-hydroxyglutarate-a 22.6 1.8E+02 0.0061 28.5 7.2 94 49-148 29-124 (232)
471 3hp4_A GDSL-esterase; psychrot 22.6 1.4E+02 0.0049 26.2 6.1 56 31-86 2-75 (185)
472 3fhl_A Putative oxidoreductase 22.6 1.2E+02 0.0041 30.9 6.2 106 31-153 5-115 (362)
473 3s28_A Sucrose synthase 1; gly 22.6 2.5E+02 0.0086 32.5 9.6 108 31-151 603-728 (816)
474 3st7_A Capsular polysaccharide 22.5 3.4E+02 0.011 27.0 9.6 79 32-116 1-95 (369)
475 3inp_A D-ribulose-phosphate 3- 22.5 1.3E+02 0.0046 29.6 6.3 84 63-150 41-130 (246)
476 3ruf_A WBGU; rossmann fold, UD 22.5 1.2E+02 0.0041 29.9 6.1 65 22-86 13-89 (351)
477 3p9z_A Uroporphyrinogen III co 22.4 4.5E+02 0.015 24.7 10.0 107 31-150 110-224 (229)
478 4af0_A Inosine-5'-monophosphat 22.4 8.2E+02 0.028 27.1 13.2 108 23-136 283-413 (556)
479 4e38_A Keto-hydroxyglutarate-a 22.3 2.4E+02 0.0082 27.6 8.1 74 52-134 124-200 (232)
480 3md9_A Hemin-binding periplasm 22.3 1.3E+02 0.0043 28.7 6.0 36 78-120 60-95 (255)
481 1oj7_A Hypothetical oxidoreduc 22.2 1.7E+02 0.0058 30.6 7.4 65 32-101 51-127 (408)
482 2j9r_A Thymidine kinase; TK1, 22.1 75 0.0026 30.9 4.3 79 30-116 55-136 (214)
483 4f3h_A Fimxeal, putative uncha 22.1 3.2E+02 0.011 25.8 9.0 83 47-132 148-237 (250)
484 1hyq_A MIND, cell division inh 22.1 90 0.0031 29.7 4.9 15 27-41 27-41 (263)
485 3f4l_A Putative oxidoreductase 22.1 34 0.0012 34.7 1.9 106 30-153 1-115 (345)
486 3paj_A Nicotinate-nucleotide p 22.0 3.1E+02 0.011 28.2 9.1 93 33-135 204-302 (320)
487 3h5o_A Transcriptional regulat 22.0 3.2E+02 0.011 26.7 9.2 65 42-115 79-149 (339)
488 3n0w_A ABC branched chain amin 21.9 2.7E+02 0.0091 27.6 8.7 72 32-109 143-225 (379)
489 3brq_A HTH-type transcriptiona 21.9 3.2E+02 0.011 25.6 8.9 67 42-116 38-110 (296)
490 2yvq_A Carbamoyl-phosphate syn 21.8 85 0.0029 28.2 4.4 28 34-61 27-56 (143)
491 3nav_A Tryptophan synthase alp 21.8 2.5E+02 0.0086 28.0 8.3 107 24-136 115-237 (271)
492 3s2u_A UDP-N-acetylglucosamine 21.8 2.1E+02 0.0072 28.9 8.0 97 30-135 1-143 (365)
493 3ip3_A Oxidoreductase, putativ 21.8 88 0.003 31.4 5.0 106 30-153 1-117 (337)
494 3gdo_A Uncharacterized oxidore 21.7 3.1E+02 0.011 27.6 9.2 106 31-153 5-115 (358)
495 3k9c_A Transcriptional regulat 21.7 2E+02 0.0068 27.5 7.4 63 44-116 30-97 (289)
496 1qo2_A Molecule: N-((5-phospho 21.6 47 0.0016 31.9 2.8 40 93-136 63-102 (241)
497 3ou2_A SAM-dependent methyltra 21.6 1.7E+02 0.0056 26.4 6.5 68 27-102 64-135 (218)
498 1y5e_A Molybdenum cofactor bio 21.5 95 0.0033 28.5 4.8 55 29-83 13-78 (169)
499 2vpt_A Lipolytic enzyme; ester 21.5 1.1E+02 0.0036 28.2 5.2 84 31-116 5-129 (215)
500 1lnq_A MTHK channels, potassiu 21.5 4.1E+02 0.014 26.3 9.9 89 34-134 140-229 (336)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.94 E-value=1.5e-26 Score=213.23 Aligned_cols=121 Identities=26% Similarity=0.537 Sum_probs=113.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
.+|||||||++.+|..++.+|+..||+ |..|.+|.+|++.++... |||||+|+.||+|||++++++||+....+++|
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~~~ip 89 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEELKHLP 89 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCe
Confidence 479999999999999999999999996 667999999999998765 99999999999999999999999877778999
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++|++.+.+...+|+++||+|||.|||+..+|...|+++++|
T Consensus 90 vI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 90 VLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp EEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988654
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.90 E-value=1.3e-22 Score=178.59 Aligned_cols=121 Identities=29% Similarity=0.431 Sum_probs=112.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+++|
T Consensus 1 m~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~p 78 (122)
T 3gl9_A 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIP 78 (122)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCC
Confidence 4569999999999999999999999999999999999999998654 99999999999999999999998766567899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
||++|+..+.....+++..||++||.||++.++|...++++++
T Consensus 79 ii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 79 VIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988763
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.88 E-value=1.1e-21 Score=175.85 Aligned_cols=123 Identities=28% Similarity=0.496 Sum_probs=114.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 469999999999999999999999999999999999999998765 999999999999999999999998655678999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
|++|+..+.....+++..||++||.||++.++|...|++++.+..
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999987653
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.87 E-value=1.5e-21 Score=170.91 Aligned_cols=119 Identities=30% Similarity=0.447 Sum_probs=111.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. ..+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~---~~~~ 75 (120)
T 3f6p_A 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKK---YDMP 75 (120)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTT---CCSC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCC
Confidence 4579999999999999999999999999999999999999998755 9999999999999999999999864 3789
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++|+..+.....+++..||++||.||++.++|...++.++++
T Consensus 76 ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 76 IIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988754
No 5
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.87 E-value=5.2e-24 Score=193.75 Aligned_cols=114 Identities=19% Similarity=0.300 Sum_probs=101.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
...+|||||||++.++..++.+|+..||+|+ .|.+|.+|+++++... |||||+|+.||+|||++++++|++ ++
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~----~~ 79 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE----RN 79 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH----TC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc----CC
Confidence 3457999999999999999999999999986 6899999999999865 999999999999999999999986 36
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+|||++|++.+... +.++|+++||.|||+.++|..+|+++.
T Consensus 80 ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 80 VPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred CCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 89999999987654 346799999999999999998887654
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.86 E-value=6.9e-21 Score=168.48 Aligned_cols=122 Identities=25% Similarity=0.540 Sum_probs=111.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+.... .||+||+|+.||+++|++++++|++....+.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 469999999999999999999999995 888999999999887542 499999999999999999999999765557899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++|+..+.....+++..||++||.||++.++|...|+.++.+
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988653
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.85 E-value=1.4e-20 Score=168.01 Aligned_cols=120 Identities=18% Similarity=0.453 Sum_probs=108.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhc-----CCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKG-----RPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A~dg~eALe~L~~-----~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+.. .. |||||+|+.||+++|+++++.|++..
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~- 78 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGEN--YNMIFMDVQMPKVDGLLSTKMIRRDL- 78 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCC--CSEEEECSCCSSSCHHHHHHHHHHHS-
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCC--CCEEEEeCCCCCCChHHHHHHHHhhc-
Confidence 368999999999999999999998984 7889999999999875 44 99999999999999999999998632
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|++++..
T Consensus 79 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 79 GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 2468999999999999999999999999999999999999999887543
No 8
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.85 E-value=2.7e-20 Score=170.21 Aligned_cols=126 Identities=23% Similarity=0.379 Sum_probs=115.9
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
...++||||||++..+..|+.+|+..||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.....+.+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTI 82 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 34579999999999999999999999999999999999999998754 9999999999999999999999986555789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
|||++|+..+.....+++..||++||.||++.++|...|+.++.+...
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 83 PVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp CEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999876543
No 9
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.9e-20 Score=167.36 Aligned_cols=121 Identities=19% Similarity=0.393 Sum_probs=107.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhc--ccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH--EICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~--~~~~~ 107 (603)
+.++||||||++..+..|+.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+.. ...+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 3579999999999999999999999999999999999999998755 9999999999999999999999853 22467
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|||++|+..+.....+++..||++||.||++.++|...|..+..
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988753
No 10
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.84 E-value=2.6e-20 Score=162.70 Aligned_cols=119 Identities=22% Similarity=0.424 Sum_probs=110.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+||||||++..+..++.+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. .+.+|
T Consensus 2 m~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~--~~~~~ 77 (124)
T 1srr_A 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVI--DENIR 77 (124)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHH--CTTCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHh--CCCCC
Confidence 4469999999999999999999999999999999999999998754 9999999999999999999999875 36899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
||++|+..+.....+++..|+++||.||++.++|...++++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 78 VIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988754
No 11
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.84 E-value=5.6e-20 Score=163.26 Aligned_cols=120 Identities=21% Similarity=0.319 Sum_probs=111.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLR--PGMKK 78 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhC--CCCcE
Confidence 369999999999999999999999999999999999999998755 99999999999999999999998653 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++..||++||.||++.++|...|++++++.
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 79 IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887654
No 12
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.84 E-value=6.7e-20 Score=159.31 Aligned_cols=119 Identities=23% Similarity=0.419 Sum_probs=110.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+||||||++..+..+..+|...||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.|++ .+.+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~ 75 (122)
T 1zgz_A 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRE---RSTVG 75 (122)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHT---TCCCE
T ss_pred CCcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHh---cCCCC
Confidence 4579999999999999999999999999999999999999998754 999999999999999999999987 36799
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 76 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 76 IILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765
No 13
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.84 E-value=7.7e-20 Score=158.34 Aligned_cols=119 Identities=23% Similarity=0.396 Sum_probs=110.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..+..+|...||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ii 76 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTT--CCSCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 48999999999999999999999999999999999999998755 99999999999999999999998643 689999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|+..+.....+++..|+++||.||++.++|...+++++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887653
No 14
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.84 E-value=9.1e-21 Score=179.18 Aligned_cols=120 Identities=16% Similarity=0.283 Sum_probs=111.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..|..+|...||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++.. +++||
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~i 82 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQ--PDARI 82 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHC--TTCEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcC--CCCCE
Confidence 479999999999999999999999999999999999999998755 99999999999999999999998753 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++..||++||.||++.++|...|+.++.+.
T Consensus 83 i~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 83 LVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988776543
No 15
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.84 E-value=7.9e-20 Score=165.78 Aligned_cols=127 Identities=24% Similarity=0.464 Sum_probs=113.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhc-------CCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKG-------RPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~-------~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
+.++||||||++..+..+..+|+..|+ .|..+.++.+|++.++. ....|||||+|+.||+++|+++++.|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 457999999999999999999999998 89999999999999961 113599999999999999999999999
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
.....+.+|||++|+..+.....+++..||++||.||++.++|..+|+++.+....
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSV 138 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTT
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 86556889999999999999999999999999999999999999999998665543
No 16
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.84 E-value=9e-20 Score=160.02 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=111.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||||||++..+..++.+|...||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLK--INIPS 78 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 469999999999999999999999999999999999999998754 99999999999999999999998753 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++..||++||.||++.++|..+|+.++++.
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 79 IVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887543
No 17
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.84 E-value=3.8e-20 Score=160.43 Aligned_cols=118 Identities=23% Similarity=0.421 Sum_probs=108.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
|.++||||||++..+..++.+|+..||+ +..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~--~~~ 76 (120)
T 1tmy_A 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKID--PNA 76 (120)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHC--TTC
T ss_pred CCceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhC--CCC
Confidence 5679999999999999999999999999 457999999999998754 99999999999999999999998753 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
|||++|+..+.....+++..|+++||.||++.++|...+++++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 77 KIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred eEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988763
No 18
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.84 E-value=1.5e-20 Score=167.92 Aligned_cols=125 Identities=21% Similarity=0.351 Sum_probs=114.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHhc-CCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLP-SISGFALLTLVMEHEICK 106 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~A~dg~eALe~L~~-~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~ 106 (603)
++++||||||++..+..|+.+|+. .||+|..+.++.+|++.+.. .. |||||+|+.|| +++|+++++.|+.....+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 357999999999999999999999 99999999999999999987 54 99999999999 999999999999854568
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
.+|||++|+..+.....+++..||++||.||++.++|..+|+.++++...
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999877644
No 19
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.84 E-value=5e-20 Score=165.29 Aligned_cols=125 Identities=20% Similarity=0.352 Sum_probs=115.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
++++||||||++..+..|..+|+..||. |..+.++.+|++.+.... |||||+|+.||+++|+++++.|++....+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 4579999999999999999999999987 888999999999998755 999999999999999999999997555688
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHhccc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~-~~~eL~~~L~~v~rr~~~ 156 (603)
+|||++|+..+.....+++..||++||.||+ +.++|..+|+.++++...
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999877643
No 20
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.83 E-value=4.4e-20 Score=160.57 Aligned_cols=120 Identities=23% Similarity=0.406 Sum_probs=105.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999999999999999999999998754 9999999999999999999999876445689999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
++|+..+.....++++.||++||.||++.++|...+++++.+
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999888889999999999999999999999999988654
No 21
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.83 E-value=1.3e-20 Score=164.66 Aligned_cols=123 Identities=28% Similarity=0.390 Sum_probs=112.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|+++||||||++..+..+..+|...||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 78 (127)
T 2jba_A 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLAWMLPGGSGIQFIKHLRRESMTRDIP 78 (127)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSC--CSEEEEESEETTEEHHHHHHHHHTSTTTTTSC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhCcccCCCC
Confidence 5679999999999999999999999999999999999999887654 99999999999999999999998765457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++|+..+.....+++..|+++||.||++.++|...++.++++.
T Consensus 79 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 79 VVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999887654
No 22
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.83 E-value=1.2e-19 Score=158.91 Aligned_cols=121 Identities=22% Similarity=0.489 Sum_probs=110.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy-~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
.++||||||++..+..++.+|...|| .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ 81 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--YGFVISDWNMPNMDGLELLKTIRAXXAMSALP 81 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCC--CCEEEEESCCSSSCHHHHHHHHHC--CCTTCC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCc
Confidence 36899999999999999999999999 6889999999999997654 99999999999999999999998754457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++|+..+.....+++..||++||.||++.++|...|++++++
T Consensus 82 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 82 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988754
No 23
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.83 E-value=4.9e-20 Score=161.71 Aligned_cols=121 Identities=22% Similarity=0.456 Sum_probs=111.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy-~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
+++||||||++..+..+..+|...|| .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 47999999999999999999999999 7888999999999998754 99999999999999999999998764457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
||++|+..+.....+++..|+++||.||++.++|..+|+.++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654
No 24
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.83 E-value=3.8e-20 Score=164.98 Aligned_cols=124 Identities=17% Similarity=0.321 Sum_probs=114.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..|..+|...||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.....+.+||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999998555689999
Q ss_pred EEEecCCCHHHHH-HHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 111 IMMSSQDSVSTVY-KCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 111 ImlSa~~d~~~~~-~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
|++|+..+..... .++..||++||.||++.++|..+|++++++...
T Consensus 84 i~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 9999988877777 899999999999999999999999999887644
No 25
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=5.6e-20 Score=164.86 Aligned_cols=121 Identities=25% Similarity=0.403 Sum_probs=112.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+||||||++..+..++.+|...||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++. .+.+|
T Consensus 3 m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~--~~~~~ 78 (137)
T 3cfy_A 3 LRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQN--DIPTS 78 (137)
T ss_dssp CCCEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHT--TCCCE
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhc--CCCCC
Confidence 4458999999999999999999999999999999999999998754 9999999999999999999999875 36899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++|+..+.....+++..||++||.||++.++|..+|+.++++.
T Consensus 79 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887654
No 26
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.83 E-value=3.2e-20 Score=162.76 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=109.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..+..+|+..||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.....+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 369999999999999999999999999999999999999998765 999999999999999999999998654678999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+... ..++..||++||.||++.++|...+++.+...
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999988877 88999999999999999999999999886554
No 27
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.83 E-value=4.2e-20 Score=164.89 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=113.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg--mDGleLLr~Lr~~~~~~~I 108 (603)
+++||||||++..+..|..+|+..||+|..+.++.+|++.+.... |||||+|+.||+ ++|+++++.|++.. +.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~~~g~~~~~~l~~~~--~~~ 81 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDD--AIGMIIEAHLEDKKDSGIELLETLVKRG--FHL 81 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTT--EEEEEEETTGGGBTTHHHHHHHHHHHTT--CCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEeCcCCCCCccHHHHHHHHHhCC--CCC
Confidence 469999999999999999999999999999999999999997654 999999999999 99999999998764 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
|||++|+..+.....+++..||++||.||++.++|..+|++++.+...
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 82 PTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999877643
No 28
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.83 E-value=8.9e-20 Score=161.46 Aligned_cols=122 Identities=25% Similarity=0.424 Sum_probs=112.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|..+||||||++..+..+..+|...||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+|
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQK--LMFP 77 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCC--CCCC
Confidence 6689999999999999999999999999999999999999998754 99999999999999999999998753 6799
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+......++..|+++||.||++.++|...|+.++++..
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 78 ILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp EEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred EEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 9999999888888899999999999999999999999999887643
No 29
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.83 E-value=1.9e-19 Score=159.70 Aligned_cols=124 Identities=21% Similarity=0.317 Sum_probs=112.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++.+||||||++..+..++.+|+..||+|..+.++.+|+..+.... .|||||+|+.||+++|+++++.|++.. .+.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~~ 83 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASE-RAALS 83 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTST-TTTCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcC-CCCCC
Confidence 3579999999999999999999999999999999999999987642 499999999999999999999998753 47899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+.....+++..|+++||.||++.++|..+|+++.....
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999999999999876653
No 30
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.83 E-value=1.9e-19 Score=163.30 Aligned_cols=124 Identities=23% Similarity=0.338 Sum_probs=111.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcC-----CCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGR-----PRNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~-----~~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ...|||||+|+.||+++|+++++.|++..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 36899999999999999999998887 788899999999999752 12499999999999999999999998764
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.+.+..
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999999999999999887554
No 31
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.83 E-value=1.8e-19 Score=163.90 Aligned_cols=120 Identities=23% Similarity=0.393 Sum_probs=113.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..|..+|...||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.. .+.+||
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~i 89 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQ--YPSTTR 89 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHH--CTTSEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhH--CCCCeE
Confidence 479999999999999999999999999999999999999998765 9999999999999999999999874 378999
Q ss_pred EEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~G-A~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++..| |++||.||++.++|..+|++++++.
T Consensus 90 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 90 ILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQ 134 (153)
T ss_dssp EEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999988765
No 32
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.83 E-value=7.6e-20 Score=162.43 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=113.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
.++++||||||++..+..|..+|...||.|..+.++.+|++.++... |||||+|+.||+++|+++++.|++.. +.+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 80 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGG--AKP 80 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTT--CCC
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCC
Confidence 34589999999999999999999999999999999999999998765 99999999999999999999998754 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
|||++|+..+.....+++..||++||.||++.++|..+|+++.++..
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (137)
T 3hdg_A 81 YVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKL 127 (137)
T ss_dssp EEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987653
No 33
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.83 E-value=7.4e-20 Score=161.41 Aligned_cols=122 Identities=17% Similarity=0.361 Sum_probs=110.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
|.++||||||++..+..++.+|... ||.++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. ..+.
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ 77 (130)
T 1dz3_A 1 MSIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAG-FEHQ 77 (130)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHH-CSSC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhc-CCCC
Confidence 4579999999999999999999987 88876 7899999999998754 9999999999999999999999873 2367
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+|||++|+..+.....+++..||++||.||++.++|...|++++++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 78 PNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp CEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999987654
No 34
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.83 E-value=1e-19 Score=160.40 Aligned_cols=122 Identities=25% Similarity=0.370 Sum_probs=107.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..++.+|+ .||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++....+.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 4799999999999999999999 8999999999999999998765 999999999999999999999998755578999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
|++|+..+... ..++..|+++||.||++.++|...|+.++.+...
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 81 IFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 99999988777 8999999999999999999999999999877643
No 35
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.82 E-value=2.8e-19 Score=159.89 Aligned_cols=124 Identities=19% Similarity=0.389 Sum_probs=113.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..|..+|...||.|..+.++.+|++.+......|||||+|+.||+++|+++++.|+.. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~i 80 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI--TPHMAV 80 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH--CTTCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh--CCCCeE
Confidence 479999999999999999999999999999999999999998422349999999999999999999999875 378999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
|++|+..+.....+++..||++||.||++.++|..+|+.++++...
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876543
No 36
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.82 E-value=1.2e-19 Score=182.41 Aligned_cols=126 Identities=25% Similarity=0.389 Sum_probs=115.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
...++||||||++..+..+...|+..||.|..+.++.+|++.++... .|||||+|+.||++||++++++|++......+
T Consensus 122 ~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~ 200 (259)
T 3luf_A 122 NQQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQL 200 (259)
T ss_dssp HTTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTS
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCC
Confidence 45689999999999999999999999999999999999999997642 38999999999999999999999986555679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
|||++|+..+.....+|++.||+|||.||++.++|...|++++++..
T Consensus 201 ~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 201 AIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999999999999999887653
No 37
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.82 E-value=1.9e-19 Score=155.32 Aligned_cols=117 Identities=26% Similarity=0.467 Sum_probs=109.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~ii 76 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKT---SSVPIL 76 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHH---CCCCEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhC---CCCCEE
Confidence 58999999999999999999999999999999999999998754 9999999999999999999999863 579999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
++|+..+......++..||++||.||++.++|...++.++++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 77 MLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988754
No 38
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.82 E-value=2e-19 Score=160.39 Aligned_cols=122 Identities=25% Similarity=0.374 Sum_probs=112.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhc-----CCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKG-----RPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~-----~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
+++||||||++..+..+..+|...|+ .|..+.++.+|++.+.. .. |||||+|+.||+++|+++++.|++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~ 86 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRW--PSIICIDINMPGINGWELIDLFKQHF 86 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCC--CSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCC--CCEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 47999999999999999999999999 89999999999999986 54 99999999999999999999998743
Q ss_pred --cCCCCeEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 104 --ICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 104 --~~~~IPVImlSa~~d~~~~~~al~~G-A~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
..+.+|||++|+..+.....+++..| |++||.||++.++|..+|++++...
T Consensus 87 ~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 87 QPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999 9999999999999999999887654
No 39
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.82 E-value=2.1e-19 Score=163.00 Aligned_cols=130 Identities=16% Similarity=0.278 Sum_probs=113.0
Q ss_pred chHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 007462 22 KWETFLQRMALRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (603)
Q Consensus 22 ~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~G--y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~L 99 (603)
.|..-....+++||||||++..+..|..+|...| +.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|
T Consensus 11 ~~~~~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l 88 (150)
T 4e7p_A 11 SSGLVPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWI 88 (150)
T ss_dssp ---------CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHH
T ss_pred ccCCCCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHH
Confidence 3444444556899999999999999999999887 78889999999999998755 9999999999999999999999
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
++. .+.+|||++|+..+.....+++..||++||.||++.++|..+|++++++..
T Consensus 89 ~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 89 RSE--KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp HHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred HHh--CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 875 378999999999999999999999999999999999999999999987653
No 40
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.82 E-value=1.1e-19 Score=159.86 Aligned_cols=120 Identities=24% Similarity=0.453 Sum_probs=104.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|...||.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. .+.+||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~i 82 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNR--GDQTPV 82 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHT--TCCCCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 579999999999999999999999999999999999999998755 9999999999999999999999875 378999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~-~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++..||++||.||+ +.++|..+|++++.+.
T Consensus 83 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 83 LVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999 8999999999887653
No 41
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.82 E-value=3.2e-19 Score=158.48 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=114.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRK-SSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~-~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
++++||||||++..+..|..+|.. .||+ |..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.....+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 357999999999999999999998 9999 889999999999998765 999999999999999999999987545678
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
+|||++|+..+.....+++..|+++||.||++.++|..+|++++++...
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999876543
No 42
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.82 E-value=1.7e-19 Score=161.05 Aligned_cols=126 Identities=22% Similarity=0.359 Sum_probs=114.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCC--------CCceEEEEeCCCCCCCHHHHHHH
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRP--------RNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~--------~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
.++++||||||++..+..++.+|...|| .|..+.++.+|++.+.... ..|||||+|+.||+++|+++++.
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 83 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence 4568999999999999999999999998 8999999999999998610 24999999999999999999999
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++....+.+|||++|+..+.....+++..|+++||.||++.++|...|++++++.
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 98764346899999999999999999999999999999999999999999987665
No 43
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.82 E-value=3.4e-19 Score=155.07 Aligned_cols=117 Identities=24% Similarity=0.440 Sum_probs=109.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..++.+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. +.+|||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~ii 78 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQ---ANVALM 78 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHH---CCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhC---CCCcEE
Confidence 58999999999999999999999999999999999999998754 9999999999999999999999875 579999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
++|+..+.....++++.|+++||.||++.++|...++.++++
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 79 FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765
No 44
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.82 E-value=1.7e-19 Score=178.52 Aligned_cols=120 Identities=21% Similarity=0.432 Sum_probs=113.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..|..+|+..||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++.. +.+||
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~i 98 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADG--IDAPA 98 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 579999999999999999999999999999999999999998755 99999999999999999999998753 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++.+||++||.||++.++|..+|+.++++.
T Consensus 99 i~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 99 LFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998765
No 45
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.82 E-value=1.9e-19 Score=161.05 Aligned_cols=121 Identities=21% Similarity=0.412 Sum_probs=109.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..+..+|...||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.....+.+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 69999999999999999999999999999999999999998755 9999999999999999999999876545689999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|+..+......++..|+++||.||++.++|...|+.++.+.
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 9999887666666777788999999999999999999887654
No 46
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.82 E-value=3.6e-19 Score=156.91 Aligned_cols=124 Identities=22% Similarity=0.339 Sum_probs=113.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCC-----CCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRP-----RNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~-----~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
.++||||||++..+..+..+|...|+ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.|+...
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 36999999999999999999999998 8999999999999998610 2499999999999999999999999864
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
..+.+|||++|+..+.....+++..|+++||.||++.++|...|++++++.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999999999999999987765
No 47
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.82 E-value=1.2e-19 Score=166.45 Aligned_cols=121 Identities=26% Similarity=0.475 Sum_probs=111.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
|+++||||||++..+..|..+|+..||+|+ .+.++.+|++.+......|||||+|+.||+++|+++++.|+... +.+
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~--~~~ 112 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD--KNA 112 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC--TTC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC--CCC
Confidence 457999999999999999999999999988 89999999999987511389999999999999999999998754 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
|||++|+..+.....+++..||++||.||++.++|..+|++++.
T Consensus 113 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 113 RVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred cEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987653
No 48
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.82 E-value=2e-20 Score=191.69 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=109.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~ 107 (603)
...+||||||++.++..++.+|+..||.|+ .|.+|.+|++.+.... |||||+|+.|| +|||+++++.|++.. +
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~---~ 233 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRM---D 233 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHT---T
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcC---C
Confidence 356999999999999999999999999999 8999999999999765 99999999999 899999999999865 8
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
+|||++|++.+ ...+|+..||++||.|||+.++|...|+.++.+..
T Consensus 234 ~piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 234 VPVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp CCEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 99999999853 46779999999999999999999999999987753
No 49
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.82 E-value=1.9e-19 Score=159.96 Aligned_cols=120 Identities=17% Similarity=0.328 Sum_probs=108.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~G--y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++..+..++.+|+..| +.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++. .+.+|
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~--~~~~~ 79 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKK--HLNIK 79 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHT--TCSCE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHH--CCCCc
Confidence 689999999999999999999876 45677999999999998754 9999999999999999999999874 36899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+.....+++..||++||.||++.++|...|++++++..
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 80 VIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred EEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999876543
No 50
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=2.4e-19 Score=160.49 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=110.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..|..+|...||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. .+||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~---~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVT---TCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTC---CCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCC---CCCE
Confidence 469999999999999999999999999999999999999998755 99999999999999999999998642 7899
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....++++.||++||.||++.++|...|+.++++.
T Consensus 79 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 79 VYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 51
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.82 E-value=7.2e-20 Score=161.64 Aligned_cols=122 Identities=16% Similarity=0.266 Sum_probs=110.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
++||||||++..+..++.+|...||.++ .+.++.+|++.+.... |||||+|+.||+++|+++++.|++.. +.+||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~--~~~~i 77 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQ--YSGII 77 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTT--CCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcC--CCCeE
Confidence 6999999999999999999999999988 7999999999998765 99999999999999999999998753 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcccc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 157 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~~ 157 (603)
|++|+..+.....+++..||++||.||++.++|..+|+.++++....
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 78 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp EEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred EEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 99999999989999999999999999999999999999998776544
No 52
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.81 E-value=2.2e-20 Score=166.12 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=110.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSS-YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~G-y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
++.+||||||++..+..++.+|+..| |+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 88 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTR--PGIVILDLGGGDLLGKPGIVEARALW--ATV 88 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCC--CSEEEEEEETTGGGGSTTHHHHHGGG--TTC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccC--CCEEEEeCCCCCchHHHHHHHHHhhC--CCC
Confidence 34799999999999999999999999 99999999999999987654 99999999999999999999998765 589
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||++|+..+.....+++..||++||.||++.++|...|++++++
T Consensus 89 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999877543
No 53
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.81 E-value=2e-19 Score=161.61 Aligned_cols=124 Identities=22% Similarity=0.324 Sum_probs=114.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++++||||||++..+..+..+|...||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.....+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 4579999999999999999999999999999999999999998755 99999999999999999999998754557899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+.....+++..||++||.||++..+|...|++++++..
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887653
No 54
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.81 E-value=4.8e-19 Score=155.94 Aligned_cols=121 Identities=17% Similarity=0.385 Sum_probs=106.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++....+.++|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKI 83 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCCeE
Confidence 579999999999999999999999999999999999999998765 999999999999999999999987654356677
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|+++..... ...+++..||++||.||++.++|...|+++....
T Consensus 84 i~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 84 LVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 777776665 7889999999999999999999999999887554
No 55
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.81 E-value=1.1e-19 Score=163.01 Aligned_cols=121 Identities=21% Similarity=0.319 Sum_probs=110.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IP 109 (603)
.++||||||++..+..|..+|...||+|..+.++.+|++.+... ..|||||+|+.||+ ++|+++++.|++. +.+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~---~~~~ 80 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQI---SELP 80 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHH---CCCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhC---CCCC
Confidence 47999999999999999999999999999999999999999762 24999999999995 9999999999864 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+.....+++..||++||.||++.++|..+|+.++++..
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 81 VVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp EEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999999999999999887653
No 56
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.81 E-value=3.9e-19 Score=153.53 Aligned_cols=118 Identities=26% Similarity=0.387 Sum_probs=109.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..+..+|...||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~---~~~~~ii 76 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQ---WSAVPVI 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHT---TCCCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHh---CCCCcEE
Confidence 68999999999999999999999999999999999999887654 999999999999999999999984 3679999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|+..+.....+++..|+++||.||++.++|...++.++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887653
No 57
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.81 E-value=3.9e-19 Score=158.81 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=111.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+ ||+++|+++++.|+.. .+.+|
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~--~~~~p 77 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREE--FPDTK 77 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHH--CTTCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHH--CCCCC
Confidence 4679999999999999999999999999999999999999998754 99999999 9999999999999865 36899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+.....+++..|+++||.||++.++|..+|++++++..
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999987653
No 58
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.81 E-value=1.2e-19 Score=161.89 Aligned_cols=125 Identities=15% Similarity=0.337 Sum_probs=114.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
.++++||||||++..+..|..+|...||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++....+.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 34689999999999999999999999999999999999999998765 9999999999999999999999875455789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
|||++|+..+.....+++..|+++||.||++.++|...|++++++.+
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999999888888899999999999999999999999999887653
No 59
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.81 E-value=2.1e-19 Score=173.74 Aligned_cols=122 Identities=20% Similarity=0.356 Sum_probs=107.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHhcC-----------CCCceEEEEeCCCCCCCHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGR-----------PRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy-~V~~A~dg~eALe~L~~~-----------~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
.++||||||++.++..|..+|+..|| .|..+.++.+|++.+... ...|||||+|+.||+++|+++++.
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 46999999999999999999999999 899999999999999863 124999999999999999999999
Q ss_pred HHhccc--CCCCeEEEEecCC-CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 99 VMEHEI--CKNIPVIMMSSQD-SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 99 Lr~~~~--~~~IPVImlSa~~-d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++... .+.+|||++|+.. +.....+++..|+++||.||++ +|..+|+.++.+.
T Consensus 141 lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 141 IRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 987522 3689999999998 8889999999999999999999 8999998887654
No 60
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.81 E-value=3e-19 Score=172.18 Aligned_cols=122 Identities=30% Similarity=0.474 Sum_probs=113.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|+++||||||++..+..+..+|...||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++.. +++|
T Consensus 1 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~--~~~~ 76 (225)
T 1kgs_A 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESG--VNTP 76 (225)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 5689999999999999999999999999999999999999998755 99999999999999999999998753 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+.....+++..||++||.||++.++|...|+.++++..
T Consensus 77 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 77 VLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999987754
No 61
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.81 E-value=2.1e-19 Score=161.60 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=111.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHhc--CCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSS-YRVTAVPDGLKAWEVLKG--RPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~G-y~V~~A~dg~eALe~L~~--~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
...+||||||++..+..|..+|...| |+|..+.++.+++..+.. .. |||||+|+.||+++|+++++.|+... +
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~--~ 94 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDA--FDILMIDGAALDTAELAAIEKLSRLH--P 94 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTT--CSEEEEECTTCCHHHHHHHHHHHHHC--T
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCC--CCEEEEeCCCCCccHHHHHHHHHHhC--C
Confidence 35799999999999999999999998 999999999999877654 44 99999999999999999999998754 7
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+|||++|+..+...+.+++..||++||.||++.++|..+|++++++.
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999999998765
No 62
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.80 E-value=1.8e-19 Score=162.31 Aligned_cols=121 Identities=23% Similarity=0.402 Sum_probs=103.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHH--hCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLR--KSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~--~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
|+++||||||++..+..+..+|. ..||.++ .+.++.+|++.+.... |||||+|+.||+++|+++++.|++. .+
T Consensus 1 m~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~--~~ 76 (141)
T 3cu5_A 1 MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKL--YP 76 (141)
T ss_dssp -CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHH--CT
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhh--CC
Confidence 45799999999999999999997 3688877 8999999999997654 9999999999999999999999874 37
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+|||++|+..+.....+++..||++||.||++.++|..+|+.++++.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 77 DCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp TCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999999998888889999999999999999999999998887654
No 63
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.80 E-value=5.2e-19 Score=153.34 Aligned_cols=121 Identities=21% Similarity=0.346 Sum_probs=110.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~I 108 (603)
|.++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.|| +++|+++++.|+.....+.+
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~ 81 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV 81 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCC
Confidence 3469999999999999999999999999999999999999998755 99999999999 99999999999986445789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||++ +..+.....+++..|+++||.||++..+|...|+++++.
T Consensus 82 ~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 82 PIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp CEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 99999 888888899999999999999999999999999988643
No 64
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.80 E-value=2.2e-19 Score=160.36 Aligned_cols=123 Identities=24% Similarity=0.356 Sum_probs=104.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..|..+|... |.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.....+.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 369999999999999999999988 99999999999999998765 999999999999999999999987655578999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
|++|+..+.....+++..||++||.||++.++|..+|+.++++...
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999999899999999999999999999999999999877543
No 65
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.80 E-value=1.3e-18 Score=157.85 Aligned_cols=121 Identities=18% Similarity=0.321 Sum_probs=111.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++++||||||++..+..+..+|+. ||+|..+.++.+|++.+.... .|||||+|+.||+++|+++++.|+... +.+|
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 78 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLIS--PNSV 78 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHC--SSCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCcE
Confidence 357999999999999999999986 899999999999999998753 259999999999999999999998653 7899
Q ss_pred EEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~G-A~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++|+..+.....+++..| +++||.||++.++|..+|+.++++.
T Consensus 79 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~ 124 (151)
T 3kcn_A 79 YLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQY 124 (151)
T ss_dssp EEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999988765
No 66
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.79 E-value=1.4e-18 Score=167.04 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=111.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKS-SYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
++++||||||++..+..+..+|... +|.+ ..+.++.+|++.+.... |||||+|+.||+++|+++++.|++. .+.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~--~~~ 79 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREK--SLS 79 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHS--CCC
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHh--CCC
Confidence 3579999999999999999999986 4887 67999999999998755 9999999999999999999999875 368
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
+|||++|+..+.....+++..||++||.||++.++|...|+.++++..
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 80 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp SEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred CcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 999999999999999999999999999999999999999999987653
No 67
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.79 E-value=1.5e-18 Score=153.93 Aligned_cols=122 Identities=16% Similarity=0.326 Sum_probs=111.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEIC 105 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MP-----gmDGleLLr~Lr~~~~~ 105 (603)
+++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.|| +++|+++++.|+.. .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~--~ 78 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQ--Y 78 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHH--C
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhh--C
Confidence 479999999999999999999999999999999999999998765 99999999999 99999999999875 4
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
+.+|||++|+..+.....+++..|+++||.||++.++|..+|++++++...
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999999999999876543
No 68
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.79 E-value=4.9e-19 Score=169.03 Aligned_cols=120 Identities=19% Similarity=0.349 Sum_probs=111.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||||||++..+..+..+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~i 79 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQ--HGCLVLDMRMPGMSGIELQEQLTAIS--DGIPI 79 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTS--CEEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 469999999999999999999999999999999999999987654 99999999999999999999998753 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++..||++||.||++.++|...|+.++++.
T Consensus 80 i~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 80 VFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999888999999999999999999999999999887654
No 69
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.79 E-value=2.2e-19 Score=189.78 Aligned_cols=124 Identities=23% Similarity=0.520 Sum_probs=109.6
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
|.+++++||||||++..+..|+.+|+..||+|..+.++.+|++.+.... |||||+|+.||+|||++++++|++. .+
T Consensus 1 M~~~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~--~~ 76 (394)
T 3eq2_A 1 MHKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQT--AS 76 (394)
T ss_dssp ---CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHT--TC
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhh--CC
Confidence 4556789999999999999999999999999999999999999998765 9999999999999999999999875 47
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHhc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 154 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~-~~~eL~~~L~~v~rr~ 154 (603)
++|||++|++.+.+.+.++++.||+|||.||+ ..++|...|++++.+.
T Consensus 77 ~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 77 ETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp CCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999 6889998888887654
No 70
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.79 E-value=1.3e-18 Score=154.29 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=112.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~I 108 (603)
+++||||||++..+..|..+|+..||+|. .+.++.+|++.+.... |||||+|+.|| +++|+++++.|+.. +.+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~---~~~ 83 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAG---CNL 83 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHH---SCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhC---CCC
Confidence 57999999999999999999999999999 5999999999998755 99999999999 79999999999875 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
|||++|+..+.....+++..|+++||.||++.++|...|++++++...
T Consensus 84 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 84 PIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp CEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999998876533
No 71
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.79 E-value=6.8e-19 Score=175.21 Aligned_cols=123 Identities=24% Similarity=0.436 Sum_probs=112.1
Q ss_pred hhcC-CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 27 LQRM-ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 27 l~~m-~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
|..| .++||||||++..+..|..+|...||.|..+.++.+|++.+.... |||||+|+.||+++|++++++|+..
T Consensus 32 m~~m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~--- 106 (249)
T 3q9s_A 32 MGRMNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKN--- 106 (249)
T ss_dssp -----CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTT---
T ss_pred cCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcC---
Confidence 4444 379999999999999999999999999999999999999998765 9999999999999999999999862
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+.+|||++|+..+...+.+++.+||++||.||++.++|..+|+.++++.
T Consensus 107 ~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 107 SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999999999999999999999998764
No 72
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.79 E-value=4.5e-19 Score=152.73 Aligned_cols=114 Identities=19% Similarity=0.413 Sum_probs=104.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|...||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii 77 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKK--KDAKII 77 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccC--CCCeEE
Confidence 58999999999999999999999999999999999999998754 99999999999999999999998754 689999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
++|+..+.. ..++..|+++||.||++.++|...+++++
T Consensus 78 ~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 78 LLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 999987655 67889999999999999999999888763
No 73
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.9e-18 Score=156.71 Aligned_cols=123 Identities=24% Similarity=0.329 Sum_probs=111.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
...+||||||++..+..|..+|...|+. |..+.++.+|++.+.... |||||+|+.||+++|+++++.|+... +.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~--~~ 89 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYE--LP 89 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTT--CS
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CC
Confidence 3579999999999999999999998854 457999999999998765 99999999999999999999998753 78
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
+|||++|+..+.....+++..||++||.||++.++|..+|+.++.+...
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 9999999999999999999999999999999999999999999877644
No 74
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.79 E-value=2.9e-18 Score=155.81 Aligned_cols=120 Identities=18% Similarity=0.380 Sum_probs=111.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..+..+|...||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+... +.+||
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~i 82 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSY--PDIER 82 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHC--TTSEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhC--CCCcE
Confidence 479999999999999999999999999999999999999998755 99999999999999999999998753 68999
Q ss_pred EEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~G-A~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++..| +++||.||++.++|...|+.++++.
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999999999887654
No 75
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.79 E-value=7.5e-19 Score=167.93 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=110.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
|..+||||||++..+..|..+|...||+|+ .+.++.+|++.+.... |||||+|+.||+++|+++++.|+... ..
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~---~~ 86 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKR---IA 86 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTT---CS
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcC---CC
Confidence 557999999999999999999999999988 8999999999998755 99999999999999999999998753 35
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|||++|+..+.....+++..||++||.||++.++|...|+.++.+.
T Consensus 87 pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 87 PIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp CEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654
No 76
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.79 E-value=4.7e-19 Score=187.97 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=112.4
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVIm 112 (603)
+||||||++.++..|+.+|+..||.|..+.++.+|++.+.... |||||+|+.||+|||++++++|++.. +.+|||+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~--~~~pvI~ 77 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENS--PDSVVIV 77 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHC--TTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEEE
Confidence 7999999999999999999999999999999999999998765 99999999999999999999998754 7899999
Q ss_pred EecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 113 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
+|++.+.+.+.+|+..||+|||.||++.++|...|++++....
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987653
No 77
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.79 E-value=8.1e-19 Score=175.38 Aligned_cols=120 Identities=23% Similarity=0.443 Sum_probs=112.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|++.. +.+||
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~pi 204 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPV 204 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHH--CCSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcC--CCCcE
Confidence 479999999999999999999999999999999999999998765 99999999999999999999998764 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+.....+++..|+++||.||++.++|...|++++++.
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 78
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.79 E-value=2.1e-18 Score=153.26 Aligned_cols=121 Identities=21% Similarity=0.366 Sum_probs=106.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC---CC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC---KN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~---~~ 107 (603)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+... +|+||+|+.||+++|+++++.|++.... ..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 83 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQR 83 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCC
Confidence 47999999999999999999999999999999999999988642 4999999999999999999999843211 22
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+||++|+..+.....+++..||++||.||++.++|...|++++.+.
T Consensus 84 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 84 PLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred ceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 36888999999999999999999999999999999999999887554
No 79
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.78 E-value=2.3e-18 Score=153.61 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=109.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcC----CCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGR----PRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~----~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
.++||||||++..+..+..+|...|+ .|..+.++.+|++.+... ...|||||+|+.||+++|+++++.|+....
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 36899999999999999999999898 899999999999999861 024999999999999999999999987644
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
.+.+|||++|+..+.....+++..|+++||.||++.++|..++....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998877654
No 80
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.78 E-value=2.1e-18 Score=156.58 Aligned_cols=121 Identities=17% Similarity=0.334 Sum_probs=112.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++||||||++..+..|..+|.. .||.++ .+.++.+|++.+.... |||||+|+.||+++|+++++.|+... +.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~--~~~ 80 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWD--GAA 80 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHC--TTC
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhC--CCC
Confidence 47999999999999999999998 799988 7999999999998765 99999999999999999999998753 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
|||++|+..+.....+++..||++||.||++.++|..+|++++++..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 81 RILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred eEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999998876543
No 81
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.78 E-value=8.4e-19 Score=171.95 Aligned_cols=123 Identities=25% Similarity=0.492 Sum_probs=112.7
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
|..|+++||||||++..+..|..+|...||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+.. +
T Consensus 1 M~~m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~---~ 75 (238)
T 2gwr_A 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRAD---S 75 (238)
T ss_dssp -CCCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTT---C
T ss_pred CCcccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhC---C
Confidence 3456789999999999999999999999999999999999999998754 9999999999999999999999864 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+|||++|+..+......++..||++||.||++.++|..+|+.++++.
T Consensus 76 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 76 GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp CCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 799999999999888999999999999999999999999999887654
No 82
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.78 E-value=3.5e-18 Score=155.37 Aligned_cols=120 Identities=18% Similarity=0.405 Sum_probs=111.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..|..+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. .+.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dliild~~l~~~~g~~~~~~l~~~--~~~~pi 78 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF--AGIVISDIRMPGMDGLALFRKILAL--DPDLPM 78 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTC--CSEEEEESCCSSSCHHHHHHHHHHH--CTTSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCE
Confidence 468999999999999999999999999999999999999997654 9999999999999999999999875 378999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+......++..|+++||.||++.++|...|++++++.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 79 ILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp EEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988664
No 83
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.77 E-value=2.2e-18 Score=184.94 Aligned_cols=121 Identities=24% Similarity=0.404 Sum_probs=112.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..|..+|...||.|..+.++.+|++.+.... |||||+|+.||+|+|+++++.|+.....+.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 58999999999999999999999999999999999999998755 9999999999999999999999976545789999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|+..+.....+++..||++||.||++.++|...|+.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887543
No 84
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.77 E-value=5.4e-18 Score=151.39 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=107.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|... |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii 76 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERW--PETVRI 76 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHC--TTSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEE
Confidence 47999999999999999999875 99999999999999998754 99999999999999999999998753 689999
Q ss_pred EEecCCCHHHHHHHHHc-CCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMR-GAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~-GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|+..+.....+++.. ||++||.||++.++|...++.++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 77 IITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 99999988888889876 59999999999999999999887653
No 85
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.77 E-value=1.5e-18 Score=168.18 Aligned_cols=120 Identities=33% Similarity=0.461 Sum_probs=111.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|+++||||||++..+..|..+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 3 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~---~~~~ 77 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRAR---SSVP 77 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHH---CSCS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcC---CCCC
Confidence 5689999999999999999999999999999999999999998754 9999999999999999999999874 5899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++|+..+.....+++..||++||.||++.++|...|+.++++.
T Consensus 78 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 78 VIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999998764
No 86
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.77 E-value=4.2e-18 Score=164.22 Aligned_cols=118 Identities=22% Similarity=0.338 Sum_probs=109.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
|+++||||||++..+..+..+|...| .|..+.++.+|++.+ . .|||||+|+.||+++|+++++.|+... +.+|
T Consensus 1 Mm~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ 73 (220)
T 1p2f_A 1 MMWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETR--PETW 73 (220)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHC--TTSE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 56899999999999999999999988 899999999999877 2 399999999999999999999998754 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
||++|+..+.....+++..||++||.||++.++|...|+.++++.
T Consensus 74 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 74 VILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999998764
No 87
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.76 E-value=2.3e-18 Score=166.92 Aligned_cols=121 Identities=28% Similarity=0.441 Sum_probs=112.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..|..+|...||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+... +.+||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~--~~~~i 82 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMD--NDVPV 82 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 369999999999999999999999999999999999999998765 99999999999999999999998753 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
|++|+..+.....+++..||++||.||++.++|...|+.++++..
T Consensus 83 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 999999998888899999999999999999999999999987653
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.76 E-value=5e-18 Score=181.03 Aligned_cols=119 Identities=23% Similarity=0.449 Sum_probs=111.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..++.+|...||+|..+.++.+|++.+.... |||||+|+.||+++|++++++|++.. +++|||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~--~~~pvI 76 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERS--PETEVI 76 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Confidence 48999999999999999999999999999999999999998755 99999999999999999999998753 789999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|++.+.+.+.+++..||+|||.||++.++|...|++++...
T Consensus 77 vlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887543
No 89
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.76 E-value=1.4e-17 Score=148.88 Aligned_cols=120 Identities=18% Similarity=0.359 Sum_probs=104.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
...++||||||++..+..+..+|... ||.++ .+.++.+|++.+.... |||||+|+.||+++|+++++.|+.. .+
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~--~~ 82 (143)
T 2qv0_A 7 GEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQF--AH 82 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTS--TT
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHcc--CC
Confidence 34579999999999999999999875 88854 7999999999998765 9999999999999999999999864 35
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+|||++|+..+ ...+++..|+++||.||++.++|..+|+++++..
T Consensus 83 ~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (143)
T 2qv0_A 83 KPFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAW 128 (143)
T ss_dssp CCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHH
Confidence 678999998744 5678999999999999999999999999887665
No 90
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.76 E-value=2e-18 Score=151.86 Aligned_cols=119 Identities=19% Similarity=0.281 Sum_probs=107.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
+++||||||++..+..++.+|+..++.|..+.++.+|++.+.. . |||||+|+.||+++|+++++.|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~i 77 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHK--SPASL 77 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTT--CCCEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCC--CCCCE
Confidence 4799999999999999999999888899999999999988764 3 99999999999999999999998754 78999
Q ss_pred EEEecCCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSV-----STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~-----~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+. ....+++..|+++||.||++.++|..+|++++.+.
T Consensus 78 i~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 78 ILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 999999874 77778999999999999999999999999886554
No 91
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.76 E-value=3.9e-18 Score=152.53 Aligned_cols=120 Identities=23% Similarity=0.415 Sum_probs=103.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc---cCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE---ICK 106 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~---~~~ 106 (603)
|.++||||||++..+..+..+|+..||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|++.. ..+
T Consensus 9 ~~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 86 (140)
T 3c97_A 9 MPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTK 86 (140)
T ss_dssp -CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCC
Confidence 4579999999999999999999999999999999999999998754 99999999999999999999998642 236
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+|||++|+........ ..|+++||.||++.++|..+|+.++.+.
T Consensus 87 ~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 87 RASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred ceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 78999999876544322 7899999999999999999999887654
No 92
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.75 E-value=1.5e-17 Score=145.98 Aligned_cols=120 Identities=22% Similarity=0.313 Sum_probs=108.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-mDGleLLr~Lr~~~~~~~IP 109 (603)
+++||||||++..+..+..+|...||+|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|+... +.+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~--~~~~ 81 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREID--PNMP 81 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHC--TTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcC--CCCC
Confidence 47999999999999999999999999999999999999999875 13999999999997 99999999998753 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+......++..| +||.||++.++|..+|++++....
T Consensus 82 ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 99999999888887877776 899999999999999999887653
No 93
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.75 E-value=4.7e-18 Score=154.07 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=101.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHhc-CCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS-SY-RVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~-Gy-~V~~A~dg~eALe~L~~-~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
+++||||||++..+..|..+|... || .|..+.++.+|++.+.. .. |||||+|+.||+++|+++++.|+.. .+.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~--~~~ 78 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRF--DPS 78 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHH--CTT
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHh--CCC
Confidence 369999999999999999999987 88 67889999999999987 54 9999999999999999999999875 478
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccc
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~ 156 (603)
+|||++|+..+.....+++..|+++||.||++.++|...|++++++...
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 79 NAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp SEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred CeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 9999999999999999999999999999999999999999999877644
No 94
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.75 E-value=9.1e-18 Score=155.43 Aligned_cols=130 Identities=24% Similarity=0.355 Sum_probs=101.5
Q ss_pred CccchHHhhhcC---CCEEEEEecCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHH
Q 007462 19 GIAKWETFLQRM---ALRVLLVEADDSTRQIVTALLRKSS-YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93 (603)
Q Consensus 19 ~~v~we~fl~~m---~lrVLLVDDD~~~r~lL~~lL~~~G-y~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGl 93 (603)
+.--|..+..+| +++||||||++..+..|+.+|...| +.+ ..+.++.+|++.+.... |||||+|+.||+++|+
T Consensus 10 ~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~ 87 (164)
T 3t8y_A 10 HSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGI 87 (164)
T ss_dssp --------------CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHH
T ss_pred ccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHH
Confidence 445577777776 3799999999999999999999875 444 46899999999998765 9999999999999999
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCH--HHHHHHHHcCCcEEEeCCCC---------HHHHHHHHHHHHHh
Q 007462 94 ALLTLVMEHEICKNIPVIMMSSQDSV--STVYKCMMRGAADYLVKPVR---------RNELRNLWQHVWRR 153 (603)
Q Consensus 94 eLLr~Lr~~~~~~~IPVImlSa~~d~--~~~~~al~~GA~DyL~KP~~---------~~eL~~~L~~v~rr 153 (603)
++++.|+... + +|||++++..+. ..+.+++..||++||.||++ .++|...|++++.+
T Consensus 88 ~l~~~lr~~~--~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 88 EALKLIMKKA--P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp HHHHHHHHHS--C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcC--C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 9999998754 4 899999997764 37779999999999999999 67777777766543
No 95
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.75 E-value=5.2e-18 Score=175.56 Aligned_cols=120 Identities=25% Similarity=0.323 Sum_probs=109.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~-~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
..+||||||++.++..|..+|. ..||.|..+.++.+|++.+.... |||||+|+.||+|+|+++++.|+.....+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 3579999999999999999996 46899999999999999998754 99999999999999999999998765457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
||++|+..+...+.+++..||+|||.||++..+|...+..+.+
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887643
No 96
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.75 E-value=2.9e-17 Score=145.95 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=107.8
Q ss_pred hcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC-
Q 007462 28 QRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK- 106 (603)
Q Consensus 28 ~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~- 106 (603)
.....+||||||++..+..|..+|...||+|..+.++.+|++.+.... ||||| ||+++|+++++.|+.. +
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~---~~ 85 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEK---HS 85 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHH---ST
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhc---CC
Confidence 345679999999999999999999999999999999999999998765 99999 9999999999999875 5
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHh
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRR 153 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~-~~~eL~~~L~~v~rr 153 (603)
.+|||++|+..+.....+++..||++||.||+ +.++|...|++++++
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999 999999999988654
No 97
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.74 E-value=6.1e-18 Score=143.92 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=105.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|...||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.....+.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 58999999999999999999999999999999999999998755 9999999999999999999999876544789999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
++++..+.. .++..|+++||.||++..+|...|++++
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 999987766 8899999999999999999998887654
No 98
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.73 E-value=2.7e-18 Score=167.50 Aligned_cols=120 Identities=21% Similarity=0.322 Sum_probs=110.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSS-YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~G-y~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||||||++..+..|..+|...| |.++ .+.++.+|++.+.... |||||+|+.||+++|+++++.|++. .+.+|
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~--~~~~~ 77 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSR--MPDLR 77 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHH--CTTCE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHh--CCCCc
Confidence 699999999999999999999886 8855 6999999999998755 9999999999999999999999875 47899
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
||++|+..+.....+++..||++||.||++.++|..+|+.++++..
T Consensus 78 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 78 CLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999987753
No 99
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.73 E-value=3.3e-18 Score=166.36 Aligned_cols=123 Identities=10% Similarity=0.050 Sum_probs=107.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHH-hCCCEEEE-ECCHHHHHHH-HhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLR-KSSYRVTA-VPDGLKAWEV-LKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~-~~Gy~V~~-A~dg~eALe~-L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
++++||||||++..+..|+.+|+ ..||.|+. +.++.+++.. +.... |||||+|+.||+++|+++++.|++. ..+
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~-~~~ 82 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRS--IQMLVIDYSRISDDVLTDYSSFKHI-SCP 82 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGG--CCEEEEEGGGCCHHHHHHHHHHHHH-HCT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccC--CCEEEEeCCCCCCCHHHHHHHHHHh-hCC
Confidence 35799999999999999999998 46898865 4567777653 55543 9999999999999999999999872 247
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhcc
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~ 155 (603)
++|||++|+..+......++..||++||.||++.++|..+|+.++++..
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 8999999999998899999999999999999999999999999987653
No 100
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.73 E-value=1.3e-17 Score=149.97 Aligned_cols=114 Identities=20% Similarity=0.358 Sum_probs=95.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
...+||||||++..+..|+.+|+.. ||.++ .+.++.+|++.+.... .|||||+|+.||+++|+++++.|+... .
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~---~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKT---R 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHC---C
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcC---C
Confidence 3479999999999999999999988 89865 7999999999998761 399999999999999999999998753 3
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L 147 (603)
+|||++++ ..+...+.+++..||++||.||++..+|...+
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 89999997 56677788999999999999999966655443
No 101
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.72 E-value=1.6e-17 Score=176.94 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=118.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHhc-CCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~A~dg~eALe~L~~-~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++||||||++..+..+..+|+. .||.|..+.++.+|++.++. .. |||||+|+.||+|||++++++|+... +.+
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~--~DlvllDi~mP~~dG~ell~~l~~~~--~~~ 78 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGH--VDIAICDLQMSGMDGLAFLRHASLSG--KVH 78 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSC--EEEEEECSSCSSSCHHHHHHHHHHHT--CEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCc
Confidence 36999999999999999999997 67899999999999999986 34 99999999999999999999998754 567
Q ss_pred eEEEEecCCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhccccCCCCccccchhhHHHHHHhhhccccc
Q 007462 109 PVIMMSSQDSV-----STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 183 (603)
Q Consensus 109 PVImlSa~~d~-----~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~~~~~s~~~~~~~~~~~~~l~~a~~~~~~s 183 (603)
|||++|+..+. ..+.+++..||++||.||++.++|..+|++++.......... ..........+..+..++...
T Consensus 79 ~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~al~~~~~~ 157 (400)
T 3sy8_A 79 SVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQDLPRQI-EVAELPSVADVVRGLDNGEFE 157 (400)
T ss_dssp EEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTTSCCCC----CCCCCHHHHHHHHHTTCEE
T ss_pred eEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhhhhhhhh-hhhcccHHHHHHHHHHCCcEE
Confidence 88888888776 678899999999999999999999999999887653321111 111122344555666655444
Q ss_pred c
Q 007462 184 N 184 (603)
Q Consensus 184 ~ 184 (603)
.
T Consensus 158 ~ 158 (400)
T 3sy8_A 158 A 158 (400)
T ss_dssp E
T ss_pred E
Confidence 3
No 102
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.71 E-value=1.3e-17 Score=148.46 Aligned_cols=123 Identities=24% Similarity=0.292 Sum_probs=102.4
Q ss_pred hHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc-CCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~-~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
|...-.....+||||||++..+..+..+|...||+|..+.++.+|++.+.. .. |||||+|+.||+++|+++++.|+.
T Consensus 7 ~~~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~ 84 (138)
T 2b4a_A 7 HHHHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKE 84 (138)
T ss_dssp -------CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTT
T ss_pred hhccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 444444556799999999999999999999999999999999999999986 55 999999999999999999999987
Q ss_pred cccCCCCeEEEEe-cCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 102 HEICKNIPVIMMS-SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 102 ~~~~~~IPVImlS-a~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
. .+.+|||++| +..+... .+++ +++||.||++.++|...|++++++
T Consensus 85 ~--~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 85 Q--TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp S--SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred h--CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 3 4789999999 8776665 5665 999999999999999999877543
No 103
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.71 E-value=5.7e-19 Score=152.80 Aligned_cols=119 Identities=24% Similarity=0.417 Sum_probs=109.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
.+||||||++..+..+..+|...||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. .+.+|||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~ii 79 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKT--PDVLLSDIRMPGMDGLALLKQIKQR--HPMLPVI 79 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCC--CSCEEECSCSSHHHHCSTHHHHHHH--CTTSCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEeeecCCCCHHHHHHHHHhh--CCCCCEE
Confidence 58999999999999999999999999999999999999997654 9999999999999999999999875 3689999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
++|+..+.....+++..|+++||.||++.++|...+++++++.
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 9999988888889999999999999999999999999887653
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.70 E-value=3e-17 Score=155.74 Aligned_cols=115 Identities=10% Similarity=0.138 Sum_probs=103.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.++||||||++..+..+..+|...||.|+.+.++.+|+ . ..|||||+|+.||+++|+ +++.++... +.+||
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~~i 82 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGT--PRTTL 82 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSC--TTCEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccC--CCCCE
Confidence 46999999999999999999999999999988888776 2 249999999999999999 888887653 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
|++|+..+...+.+++..||++||.||++..+|...|..++.+.
T Consensus 83 i~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 83 VALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887654
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.70 E-value=1.1e-16 Score=154.69 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=106.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++||||||++..+..|..+|...||.|..+.++.+|++.+.... ||||| ||+++|+++++.|+.. .+++|||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~--~~~~~ii 72 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEK--HSSIVVL 72 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHH--CTTSEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhC--CCCCcEE
Confidence 47999999999999999999999999999999999999998754 99999 9999999999999875 2389999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHhc
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 154 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~-~~~eL~~~L~~v~rr~ 154 (603)
++|+..+.....+++..||++||.||+ +.++|...|+.++++.
T Consensus 73 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 73 VSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999 9999999999987654
No 106
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.64 E-value=3.7e-16 Score=156.93 Aligned_cols=104 Identities=19% Similarity=0.378 Sum_probs=88.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
+.+||||||++.++..|..+|.. .||.|..+ ++.+++..+... .|||||+|+.||++||++++++|++. .+|
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~~----~~p 76 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLER----GLP 76 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHHT----TCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHhC----CCC
Confidence 46899999999999999999975 47877644 556666655443 49999999999999999999999863 589
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHH
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRN 141 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~ 141 (603)
|||+|+..+.+...+++++||+|||.||+...
T Consensus 77 vi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred EEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 99999999999999999999999999997543
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.63 E-value=2e-15 Score=159.28 Aligned_cols=118 Identities=26% Similarity=0.439 Sum_probs=104.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS-SYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~-Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++||||||++..+..|+.+|+.. ||+ |..+.++.+|++.+.... |||||+|+.||+++|++++++|++.. + +
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~--p-~ 77 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLR--P-M 77 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSS--C-C
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcC--C-C
Confidence 379999999999999999999986 898 558999999999998755 99999999999999999999998753 4 9
Q ss_pred eEEEEecCCCH--HHHHHHHHcCCcEEEeCCCCH---------HHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSV--STVYKCMMRGAADYLVKPVRR---------NELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~--~~~~~al~~GA~DyL~KP~~~---------~eL~~~L~~v~rr 153 (603)
|||++|+..+. +...++++.||+|||.||++. ++|...|+.+.+.
T Consensus 78 pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 78 PVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp CEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99999998875 458899999999999999983 7788888877654
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.59 E-value=1.5e-15 Score=174.96 Aligned_cols=120 Identities=13% Similarity=0.210 Sum_probs=109.6
Q ss_pred CEEEEEecCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCC----CCHHHHHHHH
Q 007462 32 LRVLLVEADD-ST-------RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS----ISGFALLTLV 99 (603)
Q Consensus 32 lrVLLVDDD~-~~-------r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg----mDGleLLr~L 99 (603)
|+|||||||. .. +..|+..|+..||+|..+.++.+|+..+.... .||+||+|++||+ ++|+++|++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 3899999999 88 99999999999999999999999999998642 3999999999999 9999999999
Q ss_pred HhcccCCCCeEEEEecCCC-HHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHHhc
Q 007462 100 MEHEICKNIPVIMMSSQDS-VSTVYKCMMRGAADYLVKPVRRNE-LRNLWQHVWRRQ 154 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~~d-~~~~~~al~~GA~DyL~KP~~~~e-L~~~L~~v~rr~ 154 (603)
|+.. .++||||+|+..+ .+.....+..||+|||.||++..+ |...|+.++++.
T Consensus 80 R~~~--~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQ--QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHS--TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhC--CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 9764 5799999999887 778888999999999999999999 888898888775
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.12 E-value=1.1e-09 Score=117.45 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=102.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||+|||+...+..+...|.. .+.+....++.+++.. ... .||+|++|+.||+|+|+++++.|+.......+||
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~-~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS-AGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH-HHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh-ccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 45899999999999888888865 4677778888888643 333 3899999999999999999999998776778999
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|++|+........+++..|++||+.||+...+|...+..+..+
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~ 270 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 270 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888766543
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.08 E-value=1e-10 Score=112.80 Aligned_cols=93 Identities=20% Similarity=0.354 Sum_probs=76.8
Q ss_pred EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 57 RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 57 ~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.|..+.++.+|++.+.... |||||+|+.||+++|++++++|++.. +..++++++.....+.+.+++..||++||.|
T Consensus 7 ~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~k 82 (237)
T 3cwo_X 7 IVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVN 82 (237)
T ss_dssp EEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHHHTTCCEEEES
T ss_pred EEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHHCCHHheEeC
Confidence 4445889999999998755 99999999999999999999998754 3455666666666889999999999999999
Q ss_pred C--CCHHHHHHHHHHHHHh
Q 007462 137 P--VRRNELRNLWQHVWRR 153 (603)
Q Consensus 137 P--~~~~eL~~~L~~v~rr 153 (603)
| ++..+|...+.+.+..
T Consensus 83 p~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 83 TAAVENPSLITQIAQTFGS 101 (237)
T ss_dssp HHHHHCTHHHHHHHHHHTG
T ss_pred CcccChHHHHHHHHHHhCC
Confidence 9 7777888777776643
No 111
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.08 E-value=0.00055 Score=67.75 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=70.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
..+||||||++..+..|..+|..+|++|..+.+. . ...+|+||+|+.||...+. ..+
T Consensus 11 ~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~-------~--~~~~~~ii~d~~~~~~~~~--------------~~~ 67 (254)
T 2ayx_A 11 GKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ-------E--PTPEDVLITDEVVSKKWQG--------------RAV 67 (254)
T ss_dssp TEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC-------C--CCTTCEEEEESSCSCCCCS--------------SEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC-------C--CCcCcEEEEcCCCcccccc--------------ceE
Confidence 4699999999999999999999999999887641 1 2348999999999976431 135
Q ss_pred EEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 111 ImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
|.++...... ....+...++.+|+...+|...+.+++.
T Consensus 68 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 68 VTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 5566532110 0123456899999999999888887764
No 112
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.99 E-value=0.00078 Score=77.37 Aligned_cols=103 Identities=10% Similarity=0.136 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 007462 45 QIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~ 124 (603)
..|...|+..||+|+.+.++.+|+..++... .+++||+|+.|+ +.++|++|+... .++||++++.......+.-
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~-~i~avIld~d~~---~~~ll~~Ir~~~--~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDKY---NLELCEEISKMN--ENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHHCT-TEEEEEEEHHHH---HHHHHHHHHHHC--TTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHhCC-CceEEEEecccc---HHHHHHHHHHhC--CCCCEEEEecCCcccccch
Confidence 3455778888999999999999999998764 599999999886 789999998764 7999999998854332221
Q ss_pred HHHcCCcEEEeCCCCH-HHHHHHHHHHHHh
Q 007462 125 CMMRGAADYLVKPVRR-NELRNLWQHVWRR 153 (603)
Q Consensus 125 al~~GA~DyL~KP~~~-~eL~~~L~~v~rr 153 (603)
....++++|+.+..+. +.+...|.+...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1235789999987754 4444555554443
No 113
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.92 E-value=0.0025 Score=55.73 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=84.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCC-CCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL-PSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~M-PgmDGleLLr~Lr~~~~~~~IP 109 (603)
+..||+|-.|-.....++.++....|+++..... ... ..-|+|+|++.+ |. .|...+.....-
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~-------~~e-~~AdlIfCEYlLLPe--------~ifS~k~~~~~d 75 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQY-------KQE-LSADLVVCEYSLLPR--------EIRSPKSLEGSF 75 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSC-------CCC-TTEEEEEEEGGGSCT--------TCCCCTTCCSCE
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEecccc-------CCc-ccceeEEEeeecChH--------HhcCCCCCCccc
Confidence 4689999999999999999998888998876431 111 237999999743 32 344455556667
Q ss_pred EEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 110 VImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+|++=..-+.+..++.++.||. ||+.|+++.-|.++|+..++..
T Consensus 76 liVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 76 VLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred EEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 8888877889999999999999 9999999999999998887654
No 114
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.13 E-value=0.012 Score=56.05 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=61.5
Q ss_pred CHHHHHHHHhcCCCCceEEEEeC-CCCCCCHHH--HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE-----
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEV-DLPSISGFA--LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL----- 134 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl-~MPgmDGle--LLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL----- 134 (603)
+..+.++.+.... ..+++++++ .++.++|+. ++++++. ..++|||.+++....+.+.+++..||++++
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~---~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRP---LTTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGG---GCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHH---hcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHH
Confidence 4455555555432 257999997 667677754 5566543 348999999999999999999999999996
Q ss_pred -eCCCCHHHHHHHHH
Q 007462 135 -VKPVRRNELRNLWQ 148 (603)
Q Consensus 135 -~KP~~~~eL~~~L~ 148 (603)
.+|++..+++..+.
T Consensus 207 ~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 207 HFREIDVRELKEYLK 221 (237)
T ss_dssp HTTSSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 67999999886554
No 115
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.95 E-value=0.55 Score=43.76 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=83.4
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC-C-CHHHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg-m-DGleLLr~Lr~ 101 (603)
..+|||. |-++.=..++..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..+.. + .--++++.|++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4688888 788888899999999999999853 47778888888765 999999876654 2 23456667766
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
... ++++|++ -+..-......+...|++.++..--+..+....+..++..
T Consensus 96 ~g~-~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 96 LGA-DDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp TTC-TTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCC-CCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 432 3566554 4554444455567899998676555666666666666543
No 116
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=92.70 E-value=0.83 Score=46.29 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=66.7
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 47 VTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 47 L~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MP-----gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
..+.|.+.||.|+ ++.|...|.++.+- . +++| +.+..| +..-+++++.|++. .++|||+=.+....
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~-G--~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~vPVI~eGGI~TP 199 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAEI-G--CIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGVGTA 199 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHHS-C--CSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHh-C--CCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCCCEEEeCCCCCH
Confidence 3444556799877 56677777666553 2 6777 555554 22337899999874 57999987788899
Q ss_pred HHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHH
Q 007462 120 STVYKCMMRGAADYLVK-----PVRRNELRNLWQH 149 (603)
Q Consensus 120 ~~~~~al~~GA~DyL~K-----P~~~~eL~~~L~~ 149 (603)
+.+..|+++||+..++- .-++..+...+..
T Consensus 200 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~ 234 (265)
T 1wv2_A 200 SDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKH 234 (265)
T ss_dssp HHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 99999999999999854 3334444444433
No 117
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=92.38 E-value=0.065 Score=33.79 Aligned_cols=19 Identities=53% Similarity=0.758 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhcccC.....
Q 007462 538 SIQREAALNKFRLKRKDRC..... 556 (603)
Q Consensus 538 ~~~r~~~~~r~~~k~~~r~..... 556 (603)
+..|.++|.||-||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4679999999999999984
No 118
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=92.25 E-value=0.84 Score=45.00 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCC------CCCCCHHHHHHHHHhcccCCCCeEEEE
Q 007462 41 DSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVD------LPSISGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 41 ~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~------MPgmDGleLLr~Lr~~~~~~~IPVIml 113 (603)
+.....+-..+++.|..+. .+.+.++|....+.. +|+|.+-+. .+...+++++++|+.. ++|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~G---ad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~ 187 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKG---IEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAE 187 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT---CSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEE
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCC---CCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEE
Confidence 3333444445566687655 478899998877643 799864321 2334568999999752 7999999
Q ss_pred ecCCCHHHHHHHHHcCCcEEEeC
Q 007462 114 SSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+-.+.+.+.+++.+||+.+++-
T Consensus 188 GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 188 GRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCEEEEc
Confidence 99999999999999999999875
No 119
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.95 E-value=1.4 Score=43.38 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCC------CCCCCHHHHHHHHHhcccCCCCeEEEE
Q 007462 41 DSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVD------LPSISGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 41 ~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~------MPgmDGleLLr~Lr~~~~~~~IPVIml 113 (603)
+.....+...++..|..+. .+.+.++|....+.. +|+|.+-+. .+...+++++++|+.. ++|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~G---ad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~ 187 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQRLG---ADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAE 187 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTT---CSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCC---CCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEE
Confidence 3334444445566687654 478888888877642 798864321 1233468999999753 7899999
Q ss_pred ecCCCHHHHHHHHHcCCcEEEeC
Q 007462 114 SSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+-.+.+.+.+++.+||+.+++-
T Consensus 188 GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 188 GRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCEEEEe
Confidence 99989999999999999999864
No 120
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=90.82 E-value=2.5 Score=38.02 Aligned_cols=110 Identities=8% Similarity=-0.054 Sum_probs=73.2
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEE
Q 007462 38 EADDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 38 DDD~~~r~lL~~lL~~~Gy~V~~---A~dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~~~~~~~IPVIm 112 (603)
|-+..=..++..+|+..||+|+. ....++.++.+.+.. +|+|.+-..+.. +. .-++++.|++... ++++|++
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~-~~i~v~v 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGL-EGILLYV 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTC-TTCEEEE
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 34556667888999999999883 457888888887755 999999877753 21 3356677766432 3577654
Q ss_pred EecC----CCHH-HHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 113 MSSQ----DSVS-TVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 113 lSa~----~d~~-~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
=-.. .+.. ....+.++|++.|+.---+..++...+...
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 3322 2222 244578899999887666777776665543
No 121
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=89.55 E-value=1.3 Score=42.58 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~ 101 (603)
..+||+. |-+..=..++..+|+..||+|+... ..++.++.+++.. ||+|.+-..|+. +. --++++.|++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 3478888 7778888999999999999998632 5566667776654 999999887664 33 3466777776
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
....+++||++--...+.+.. ...|++.|-.
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 433345887766555554433 4579887653
No 122
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=88.42 E-value=5.7 Score=40.11 Aligned_cols=99 Identities=15% Similarity=0.066 Sum_probs=67.2
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEA--DDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDD--D~~~r~lL~~lL~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl---~MPgmDGleLLr~Lr~~~~~~ 106 (603)
-|+|+.. ++.....+....+..|..+. .+.+.+++...++.. +|+|-+.- ..... +++.+.+|... ...
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~G---ad~IGv~~r~l~~~~~-dl~~~~~l~~~-v~~ 212 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAG---AKVIGVNARDLMTLDV-DRDCFARIAPG-LPS 212 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT---CSEEEEESBCTTTCCB-CTTHHHHHGGG-SCT
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHCC---CCEEEECCCccccccc-CHHHHHHHHHh-Ccc
Confidence 5666432 23334444555567898754 578988887776542 78887752 22222 35667777543 223
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++|||..++-.+.+.+.++...||+++++-
T Consensus 213 ~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 213 SVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp TSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 789999999999999999999999999874
No 123
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=87.73 E-value=0.13 Score=32.87 Aligned_cols=19 Identities=53% Similarity=0.716 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhcccCCCC
Q 007462 541 REAALNKFRLKRKDRCYDK 559 (603)
Q Consensus 541 r~~~~~r~~~k~~~r~~~k 559 (603)
|.++|.||-||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5689999999999987654
No 124
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=87.53 E-value=1.3 Score=44.88 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=62.1
Q ss_pred HHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH-----HHHHHHHHhcccCCC-CeEEEEecCCCHHH
Q 007462 50 LLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG-----FALLTLVMEHEICKN-IPVIMMSSQDSVST 121 (603)
Q Consensus 50 lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-----leLLr~Lr~~~~~~~-IPVImlSa~~d~~~ 121 (603)
.|.+.||.|. +..|...|-++.+- . +++| +.+..|-..| .++++.|++.. .+ +|||+=.+......
T Consensus 119 ~L~k~Gf~Vlpy~~~D~~~ak~l~~~-G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~--~~~vPVI~~GGI~tpsD 192 (268)
T 2htm_A 119 RLIEEDFLVLPYMGPDLVLAKRLAAL-G--TATV-MPLAAPIGSGWGVRTRALLELFAREK--ASLPPVVVDAGLGLPSH 192 (268)
T ss_dssp HHHHTTCEECCEECSCHHHHHHHHHH-T--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTT--TTSSCBEEESCCCSHHH
T ss_pred HHHHCCCEEeeccCCCHHHHHHHHhc-C--CCEE-EecCccCcCCcccCCHHHHHHHHHhc--CCCCeEEEeCCCCCHHH
Confidence 3446699876 45677655554442 2 6766 6655553333 56688887632 46 99998778889999
Q ss_pred HHHHHHcCCcEEEeC-----CCCHHHHHHHHHH
Q 007462 122 VYKCMMRGAADYLVK-----PVRRNELRNLWQH 149 (603)
Q Consensus 122 ~~~al~~GA~DyL~K-----P~~~~eL~~~L~~ 149 (603)
+..+|++||++.|+- .-++..+...+..
T Consensus 193 Aa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~ 225 (268)
T 2htm_A 193 AAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRL 225 (268)
T ss_dssp HHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 999999999998754 3334444444433
No 125
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=87.29 E-value=2.3 Score=41.35 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=70.3
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEE--eCCCCC-CC-HHHHHHHH
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILT--EVDLPS-IS-GFALLTLV 99 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLl--Dl~MPg-mD-GleLLr~L 99 (603)
..+|||. |-+..=..++..+|+..||+|+.. -..++.++.+.+.. ||+|.+ -..|.. +. --++++.|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHHH
Confidence 3578887 667888889999999999998863 36677778888765 999999 766653 33 34677778
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
++.....++||++--+.-..+. +-..||+.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 7654323688776655555543 34569987753
No 126
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=86.48 E-value=5.2 Score=39.76 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~---A~dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~ 101 (603)
..+||+. |-+..=..++..+|+..||+|+. -...++.++.+.+.. ||+|.+-..|+. +. --++++.|++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4578888 67788888999999999999864 236677777777654 999999887664 44 3467788876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
.. .++||++--.....+. +-..|++.|-.-. .+....+..++
T Consensus 201 ~~--~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 201 NG--IKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TT--CCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHH
T ss_pred cC--CCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHH
Confidence 43 4577776555445443 2378986665433 34444444443
No 127
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=86.08 E-value=6.1 Score=44.82 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=83.2
Q ss_pred hhcCCCEEEEE----ecCHHHHHH----HHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC----CC
Q 007462 27 LQRMALRVLLV----EADDSTRQI----VTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS----IS 91 (603)
Q Consensus 27 l~~m~lrVLLV----DDD~~~r~l----L~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg----mD 91 (603)
.++...+|||. |-+..=..+ +..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..|.. +.
T Consensus 598 i~e~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~ 675 (763)
T 3kp1_A 598 IEKTPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYK 675 (763)
T ss_dssp HHHSCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHH
T ss_pred hhccCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHH
Confidence 34446788887 444443332 357889999999763 37888888888765 999999988876 34
Q ss_pred HH-HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 92 GF-ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 92 Gl-eLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
.+ ++++.|++......++||+=-+.-..+. +...||+.|..-.....++...|...+...
T Consensus 676 ~MkevIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 676 NMKRIHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 43 4667777655433467665444444443 458999999988888888777666655443
No 128
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=84.72 E-value=8.3 Score=38.90 Aligned_cols=116 Identities=8% Similarity=0.021 Sum_probs=77.9
Q ss_pred CCEEEEE----ecCHHHHHHHHHH--------HHhC-CCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC----C
Q 007462 31 ALRVLLV----EADDSTRQIVTAL--------LRKS-SYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS----I 90 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~l--------L~~~-Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg----m 90 (603)
..+||+. |-+..=..++..+ |+.. ||+|+.. -..++.++.+.+.. +|+|.+-..|.. +
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccchH
Confidence 3566664 5666667777777 9999 9998752 36777778887765 999999988875 2
Q ss_pred CH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 91 SG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 91 DG-leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
.. -++++.|++.....+++||+=-...+.+. +.+.|++.|..-.....++...|...+
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~---a~~iGad~~~~da~~~~~~a~~l~~~~ 256 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINNEI---AKELGYDAGFGPGRFADDVATFAVKTL 256 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCHHH---HHHcCCeEEECCchHHHHHHHHHHHHH
Confidence 22 24566776543333477655444444433 667899988877777777766655443
No 129
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=83.33 E-value=13 Score=39.76 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=69.9
Q ss_pred CCEEEEEe----cCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCC-----------CCCCCHH
Q 007462 31 ALRVLLVE----ADDSTRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVD-----------LPSISGF 93 (603)
Q Consensus 31 ~lrVLLVD----DD~~~r~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~-----------MPgmDGl 93 (603)
...++++| +.....+.++.+-+..+..|+ .+.+.++|..+++.. .|.|++-.. -.+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aG---AD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG---ADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTT---CSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcC---CCEEEEeCCCCcCcccccccccchhHH
Confidence 45677775 233445666665555577665 478999998887653 799988321 0112346
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 94 eLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.++..+.......++|||.--+-.+...+.+++.+||+...+-
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 6677765432224799998888889999999999999988754
No 130
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=81.53 E-value=3.1 Score=41.13 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=74.5
Q ss_pred Cccccchhhhhhhc---------cCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHh-CCCEEEE------E--CC
Q 007462 2 GDVVLNDEELKEMN---------GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK-SSYRVTA------V--PD 63 (603)
Q Consensus 2 ~~~~~~~~~~~~~~---------~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~------A--~d 63 (603)
|.+||+.+|++-|. +.+++|=- .|=+|.......++.++.. .|+.|+. + .|
T Consensus 66 GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G-----------~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d 134 (224)
T 2bdq_A 66 GNFVYNDLELRIMEEDILRAVELESDALVLG-----------ILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSD 134 (224)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHTTCSEEEEC-----------CBCTTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTT
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCEEEEe-----------eECCCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcC
Confidence 77899999999887 23333211 1113333444555555543 3566654 5 78
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCC---CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH-HcCCcEEEeC
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLP---SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM-MRGAADYLVK 136 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP---gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al-~~GA~DyL~K 136 (603)
..+|++.|.+.. +|=||+-=.-+ -.+|+++|++|.+.. ..-+.||.-+--..+.+.+.+ ..|+..|-..
T Consensus 135 ~~~ale~L~~lG--v~rILTSG~~~~~~a~~g~~~L~~Lv~~a--~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 135 QKKSIDQLVALG--FTRILLHGSSNGEPIIENIKHIKALVEYA--NNRIEIMVGGGVTAENYQYICQETGVKQAHGT 207 (224)
T ss_dssp HHHHHHHHHHTT--CCEEEECSCSSCCCGGGGHHHHHHHHHHH--TTSSEEEECSSCCTTTHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHHcC--CCEEECCCCCCCCcHHHHHHHHHHHHHhh--CCCeEEEeCCCCCHHHHHHHHHhhCCCEEccc
Confidence 899999998865 99999864444 488999999997643 222344443333444444444 5788888643
No 131
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=79.67 E-value=19 Score=37.95 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCCEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCC------------C
Q 007462 30 MALRVLLVE----ADDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------------I 90 (603)
Q Consensus 30 m~lrVLLVD----DD~~~r~lL~~lL~~~-Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPg------------m 90 (603)
....+++|| +.+.....++.+-+.. +..|+ .+.+.++|..+.+.. .|.|.+-+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCccc
Confidence 356778875 3444555566665554 56654 378999998888753 799988321 22 2
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
..+.++..+.+.....++|||.--+-.+...+.+++.+||+...+-
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3456666665421124799998888888999999999999988754
No 132
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=78.79 E-value=3.8 Score=42.57 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=75.0
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRK---SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~---~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
.+.|.+++.|+|.|......|..+|.+ ..|+|..+++.+.+.+.++... +||+|+|-.++.-. ..
T Consensus 17 ~~~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-----~~----- 84 (373)
T 3fkq_A 17 FQGMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-----SE----- 84 (373)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-----GG-----
T ss_pred ccCceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-----hh-----
Confidence 466889999999999999999999963 3678999999999999998765 99999998776521 11
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
.....+|++++.....+ ...-...+.|--..+++...+..++
T Consensus 85 ~~~~~~v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 85 FKRNCGLAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp GCSSCEEEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred hcccCcEEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 11345677776543221 0112236888888888876665554
No 133
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=78.57 E-value=5 Score=40.47 Aligned_cols=117 Identities=17% Similarity=0.247 Sum_probs=73.1
Q ss_pred Cccccchhhhhhhc---------cCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHh-CCCEEEE------ECCHH
Q 007462 2 GDVVLNDEELKEMN---------GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK-SSYRVTA------VPDGL 65 (603)
Q Consensus 2 ~~~~~~~~~~~~~~---------~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~------A~dg~ 65 (603)
|.++|+.+|++-|. +.+++|=- .|=.|.......++.++.. .|..|+. +.|..
T Consensus 63 GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G-----------~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~ 131 (256)
T 1twd_A 63 GDFCYSDGEFAAILEDVRTVRELGFPGLVTG-----------VLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPL 131 (256)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHTTCSEEEEC-----------CBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCEEEEe-----------eECCCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHH
Confidence 77899999999887 23333311 1112333444555555543 3666665 57999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 66 KAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
+||+.|.+.. +|=||+-=.-+ -.+|+++|++|.+.. . -+.||.-+--..+.+...+..|+..|-
T Consensus 132 ~ale~L~~lG--~~rILTSG~~~~a~~g~~~L~~Lv~~a--~-~i~Im~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 132 YTLNNLAELG--IARVLTSGQKSDALQGLSKIMELIAHR--D-APIIMAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp HHHHHHHHHT--CCEEEECTTSSSTTTTHHHHHHHHTSS--S-CCEEEEESSCCTTTHHHHHHHTCSEEE
T ss_pred HHHHHHHHcC--CCEEECCCCCCCHHHHHHHHHHHHHhh--C-CcEEEecCCcCHHHHHHHHHcCCCeEe
Confidence 9999998765 89999864333 488999999997643 2 233443333333444444477888876
No 134
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=78.54 E-value=26 Score=32.79 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=61.1
Q ss_pred CCEEEEEecCH--HHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHhcCCCCceEEEEeCCCCCC-------CHHHHHH
Q 007462 31 ALRVLLVEADD--STRQIVTALLRKSSYRVTAV----PDGLKAWEVLKGRPRNIDLILTEVDLPSI-------SGFALLT 97 (603)
Q Consensus 31 ~lrVLLVDDD~--~~r~lL~~lL~~~Gy~V~~A----~dg~eALe~L~~~~~~pDLVLlDl~MPgm-------DGleLLr 97 (603)
....++|-+.+ .....+...+++.|..+... .+..+.++.+.+.. .|+|.++ |+. .+++.++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~---~g~~g~~~~~~~~~~i~ 151 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVH---TGTDQQAAGRKPIDDLI 151 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEE---CCHHHHHTTCCSHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEc---CCCcccccCCCCHHHHH
Confidence 34455555543 33355556666678776542 34434344443332 6888776 332 3567888
Q ss_pred HHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 98 LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 98 ~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+|++.. +++||++-.+-. .+.+.+++++||+.+++-
T Consensus 152 ~l~~~~--~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 152 TMLKVR--RKARIAVAGGIS-SQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp HHHHHC--SSCEEEEESSCC-TTTHHHHHTTCCSEEEEC
T ss_pred HHHHHc--CCCcEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 887642 478888766664 778888999999998764
No 135
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=78.20 E-value=34 Score=30.77 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=73.4
Q ss_pred CCEEEEEecCH-HHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 31 ALRVLLVEADD-STRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 31 ~lrVLLVDDD~-~~r~lL~~lL~~~Gy~V~~---A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
.++++|+.+.+ .....+..++...+ .|.. .-+..+..+++.. .|++|+-... ..-|+-+++.+..
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a~----- 138 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMCL----- 138 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHHT-----
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHHC-----
Confidence 57888887754 35667788888776 4444 3355677777753 6888885433 3346778887743
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.+|||+.. .....+.+ .|..+++..|-+.++|...|..++.
T Consensus 139 G~PvI~~~----~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 139 GAIPIASA----VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp TCEEEEES----CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEeC----CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 57877542 23344455 7888999999999999999998875
No 136
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=77.54 E-value=35 Score=32.34 Aligned_cols=120 Identities=13% Similarity=0.232 Sum_probs=68.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEe----------CCCC----CCCHHH
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTE----------VDLP----SISGFA 94 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlD----------l~MP----gmDGle 94 (603)
|..+|+++--.+.++..+..++...+.++.. ..+.+++++..+.....+|+||.- +..| ..+|++
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~D 82 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFD 82 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHH
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhH
Confidence 5678999999999999888888876666543 457777777655422347888852 2333 356667
Q ss_pred HHHHHHhcccCCCCeEEEEecC---CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 95 LLTLVMEHEICKNIPVIMMSSQ---DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 95 LLr~Lr~~~~~~~IPVImlSa~---~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+++.|....... -.|-+++-. .....+...+.....-|. .-+.+++...+..+..
T Consensus 83 il~al~~a~~~~-~kIavvg~~~~~~~~~~~~~ll~~~i~~~~--~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 83 TMRAVYNAKRFG-NELALIAYKHSIVDKHEIEAMLGVKIKEFL--FSSEDEITTLISKVKT 140 (196)
T ss_dssp HHHHHHHHGGGC-SEEEEEEESSCSSCHHHHHHHHTCEEEEEE--ECSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CcEEEEeCcchhhHHHHHHHHhCCceEEEE--eCCHHHHHHHHHHHHH
Confidence 766665433221 133333322 234444444443332222 2345566666665543
No 137
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=77.35 E-value=14 Score=35.20 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=53.4
Q ss_pred CCEE-EEECCHHHHHHHHhcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH
Q 007462 55 SYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM 126 (603)
Q Consensus 55 Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al 126 (603)
|..+ +.+.+..++.+.... ..|.|+++-..+. .-|+++++.++.. .++|||+..+- +.+.+.+++
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~---~~~pvia~GGI-~~~nv~~~~ 182 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---ISIPVIAIGGM-TPDRLRDVK 182 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHH---CCSCEEEESSC-CGGGHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHH
Confidence 5543 346788888777653 2799999764332 2367888888653 27899988887 788889999
Q ss_pred HcCCcEEEe
Q 007462 127 MRGAADYLV 135 (603)
Q Consensus 127 ~~GA~DyL~ 135 (603)
..||+.+.+
T Consensus 183 ~~Ga~gv~v 191 (221)
T 1yad_A 183 QAGADGIAV 191 (221)
T ss_dssp HTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999998865
No 138
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=76.66 E-value=24 Score=35.60 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=65.6
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeCC---CCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEA--DDSTRQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVD---LPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDD--D~~~r~lL~~lL~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~---MPgmDGleLLr~Lr~~~~~~ 106 (603)
.|||+-. ++.....|....+..|..+ +.+.+.+|+...+.. .+|+|=+.-. --..| ++...+|... ...
T Consensus 145 ~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~-ip~ 219 (272)
T 3tsm_A 145 CILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKM-APS 219 (272)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHH-SCT
T ss_pred EEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHh-CCC
Confidence 4555532 2333444444556789875 458899998777653 3788866521 11223 4555555432 224
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++|||.-++-...+.+.++..+||+.+|+-
T Consensus 220 ~~~vIaesGI~t~edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 220 DRLLVGESGIFTHEDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp TSEEEEESSCCSHHHHHHHHTTTCCEEEEC
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 789999999999999999999999999874
No 139
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=76.51 E-value=17 Score=36.06 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=59.1
Q ss_pred EECCHHHHHHHHhcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcE
Q 007462 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (603)
Q Consensus 60 ~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~D 132 (603)
.+.+.+|+.+..+. .+|.|.+.-..|. .-|++.++++.... ..++|||.+.+- ..+.+..++..||+.
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 47899998887764 3899998654443 23788899887531 137999999887 667788899999999
Q ss_pred EEe-----CCCCHHHHHHHHHHH
Q 007462 133 YLV-----KPVRRNELRNLWQHV 150 (603)
Q Consensus 133 yL~-----KP~~~~eL~~~L~~v 150 (603)
+.+ +.-++.+....+...
T Consensus 216 vav~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 216 IVVVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp EEESHHHHTCSSHHHHHHHHHHH
T ss_pred EEEeHHHhCCCCHHHHHHHHHHH
Confidence 875 344444444444333
No 140
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=76.32 E-value=8.9 Score=38.15 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d------~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
.++++++|++. .+++||++|+-... ...+..|.+.|++++++-.+..+++...+..+.
T Consensus 81 ~~~~v~~ir~~--~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 81 VLELSETLRKE--FPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp HHHHHHHHHHH--CTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--cCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 45667888754 24789999854331 355677889999999998888888776665543
No 141
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=76.02 E-value=4.8 Score=41.24 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=72.1
Q ss_pred CccccchhhhhhhccCCCccchHHhhhcCCCEEEEEe----cCHHHHHHHHHHHHhC-CCEEEE------ECCHHHHHHH
Q 007462 2 GDVVLNDEELKEMNGNEGIAKWETFLQRMALRVLLVE----ADDSTRQIVTALLRKS-SYRVTA------VPDGLKAWEV 70 (603)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~we~fl~~m~lrVLLVD----DD~~~r~lL~~lL~~~-Gy~V~~------A~dg~eALe~ 70 (603)
|.+|++.+|++.|... -+.|. +....-+++- |-......++.++... ++.|+. +.|..+|++.
T Consensus 101 GdF~Ys~~E~~~M~~d-----I~~~~-~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~ 174 (287)
T 3iwp_A 101 GDFLYSDREIEVMKAD-----IRLAK-LYGADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALET 174 (287)
T ss_dssp SCSCCCHHHHHHHHHH-----HHHHH-HTTCSEEEECCBCTTSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHH
T ss_pred CCcccCHHHHHHHHHH-----HHHHH-HcCCCEEEEeeeCCCCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHH
Confidence 6789999999888721 01111 1111222222 3233444455555432 344443 3579999999
Q ss_pred HhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH-cCCcEEEe
Q 007462 71 LKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLV 135 (603)
Q Consensus 71 L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~-~GA~DyL~ 135 (603)
|.... +|-||+-=.-| ..+|+++|++|.+.. ...|+|+.-.+ -..+.+.+.++ .|+..|-.
T Consensus 175 Li~lG--vdrILTSG~~~~a~~Gl~~Lk~Lv~~a-~~rI~ImaGGG-V~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 175 LLTLG--FERVLTSGCDSSALEGLPLIKRLIEQA-KGRIVVMPGGG-ITDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp HHHHT--CSEEEECTTSSSTTTTHHHHHHHHHHH-TTSSEEEECTT-CCTTTHHHHHHHHCCSEEEE
T ss_pred HHHcC--CCEEECCCCCCChHHhHHHHHHHHHHh-CCCCEEEECCC-cCHHHHHHHHHhhCCCEEeE
Confidence 98754 99999965544 378999999997643 23455544443 33444444444 88888864
No 142
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=75.26 E-value=19 Score=36.18 Aligned_cols=108 Identities=12% Similarity=0.128 Sum_probs=72.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~G--y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+++|+.+.+. ..+..++.... +.+...-+..+..+++.. .|++|+-..-.+.-|+-+++.+.. .+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a~-----G~ 308 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMAA-----GT 308 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHHH-----TC
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHHc-----CC
Confidence 578888888766 56666665432 223333455666777764 578887532123346778887743 56
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||... .....+.+..|..+++..|-+.++|...|..++..
T Consensus 309 PvI~~~----~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 309 AVVASD----LDAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EEEECC----CHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred CEEEec----CCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 887532 24556777788899999999999999999988753
No 143
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=74.79 E-value=20 Score=41.44 Aligned_cols=119 Identities=8% Similarity=-0.018 Sum_probs=81.1
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~ 101 (603)
..+|||. |.+..=..++..+|+..||+|+.. .+.++.++.+.+.. +|+|.+-..|.. +. .-++++.|++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 3577775 456666778888999999999873 36788888887765 999988766653 22 4567777876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
... .+++| |+-+..-......+.+.|++.|+..--+..+....+...+..
T Consensus 682 ~G~-~dv~V-ivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~ 731 (762)
T 2xij_A 682 LGR-PDILV-MCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEK 731 (762)
T ss_dssp TTC-TTSEE-EEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCC-CCCEE-EEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHH
Confidence 543 34444 444423232334567899999998666888777776666543
No 144
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=74.01 E-value=20 Score=34.58 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCCce-EEEEeCCCCC-CCH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC---
Q 007462 64 GLKAWEVLKGRPRNID-LILTEVDLPS-ISG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK--- 136 (603)
Q Consensus 64 g~eALe~L~~~~~~pD-LVLlDl~MPg-mDG--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K--- 136 (603)
..+.++.+.... ++ |+++++.-.+ ..| ++++++|++. .++|||...+-.+.+.+.+++..||+.+++-
T Consensus 153 ~~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal 227 (253)
T 1thf_D 153 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 227 (253)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHHCC--CCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHH
Confidence 345445554433 66 5556654322 123 8899999753 3799999998888899999999999998765
Q ss_pred ---CCCHHHHHHHH
Q 007462 137 ---PVRRNELRNLW 147 (603)
Q Consensus 137 ---P~~~~eL~~~L 147 (603)
|+++.++...+
T Consensus 228 ~~~~~~~~~~~~~l 241 (253)
T 1thf_D 228 HFREIDVRELKEYL 241 (253)
T ss_dssp HTTCSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 56766665544
No 145
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=73.75 E-value=18 Score=41.52 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=80.0
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~ 101 (603)
..+|||. |-+..=..++..+|+..||+|+.. .+.++.++.+.+.. +|+|.+-..|.. +. .-++++.|++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 4577776 556666778888999999999873 36788888888765 999988776653 22 4567778876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
... .+++| |+-+..-......+.+.|++.|+.---+..++...|...+
T Consensus 674 ~G~-~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l 721 (727)
T 1req_A 674 LGR-PDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721 (727)
T ss_dssp TTC-TTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred cCC-CCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHH
Confidence 542 34444 4444332333445688999999987677777766665554
No 146
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=72.78 E-value=27 Score=36.51 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=66.5
Q ss_pred CCEEEEEe----cCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCC-----------CCCCHH
Q 007462 31 ALRVLLVE----ADDSTRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL-----------PSISGF 93 (603)
Q Consensus 31 ~lrVLLVD----DD~~~r~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~M-----------PgmDGl 93 (603)
...+++|+ +.....+.++.+-+..+..|+ .+.+.++|..+++.. .|.|.+-..- .+...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aG---aD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG---ADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTT---CSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcC---cCEEEEecCCCcCCCcccccCCCCCcH
Confidence 45666664 333445566665555577665 478888888877643 7988873210 012345
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 94 eLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+++..+.+.....++|||.--+-.+...+.+++.+||+..++-
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5555554321113689998888888999999999999988754
No 147
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=72.51 E-value=28 Score=35.34 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=59.3
Q ss_pred HHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCC----C---CCHHHHHHHHHhcccCCCCeEEEEecCCCHH
Q 007462 49 ALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP----S---ISGFALLTLVMEHEICKNIPVIMMSSQDSVS 120 (603)
Q Consensus 49 ~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MP----g---mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~ 120 (603)
..++..|..+.. +.+..+|....+.. .|.|+++=.-+ + ...+++++++++. .++|||+-.+-.+.+
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~~G---aD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~~~ 185 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAERLG---VDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFADGR 185 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHTT---CSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCSHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHcC---CCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCCHH
Confidence 344555776554 67888887776642 79888853222 1 2567888888753 379999988888889
Q ss_pred HHHHHHHcCCcEEEeC
Q 007462 121 TVYKCMMRGAADYLVK 136 (603)
Q Consensus 121 ~~~~al~~GA~DyL~K 136 (603)
.+.+++.+||+.+.+-
T Consensus 186 ~v~~al~~GAdgV~vG 201 (328)
T 2gjl_A 186 GLVAALALGADAINMG 201 (328)
T ss_dssp HHHHHHHHTCSEEEES
T ss_pred HHHHHHHcCCCEEEEC
Confidence 9999999999998764
No 148
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=72.26 E-value=5.3 Score=39.91 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=52.9
Q ss_pred CCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCC-C---CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc
Q 007462 55 SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL-P---SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR 128 (603)
Q Consensus 55 Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~M-P---gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~ 128 (603)
|+.+. .+.+.+++..+.+.. .|.|+.=-.. + +..+.++++.+++. .++|||+..+-.+.+.+.+++.+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~g---ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~ 199 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEELG---VHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMEL 199 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHHT---CSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHT
T ss_pred CeEEEEEcCCCHHHHHHHHHhC---CCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHc
Confidence 77655 455777766665543 5666330000 1 23357888888763 47999999999999999999999
Q ss_pred CCcEEEeC
Q 007462 129 GAADYLVK 136 (603)
Q Consensus 129 GA~DyL~K 136 (603)
||+.+++-
T Consensus 200 GAdgViVG 207 (264)
T 1xm3_A 200 GADGVLLN 207 (264)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEc
Confidence 99999865
No 149
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=71.54 E-value=21 Score=34.41 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=50.0
Q ss_pred ce-EEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC------CCCHHHHHHHH
Q 007462 78 ID-LILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK------PVRRNELRNLW 147 (603)
Q Consensus 78 pD-LVLlDl~MPgm-DG--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K------P~~~~eL~~~L 147 (603)
++ +++++..-.++ .| ++++++|++. .++|||...+-.+.+.+.+++..||+++++- |++..+++..+
T Consensus 166 ~~~i~~~~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 166 AGEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYL 242 (252)
T ss_dssp CCEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CCEEEEecccCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55 55566543221 23 8899999764 2799999999888899999999999999864 67777776554
Q ss_pred H
Q 007462 148 Q 148 (603)
Q Consensus 148 ~ 148 (603)
.
T Consensus 243 ~ 243 (252)
T 1ka9_F 243 A 243 (252)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=71.49 E-value=38 Score=34.13 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCCEEEEEecCH-HHHHHHHHHHHhCCCEEEEE-C--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 30 MALRVLLVEADD-STRQIVTALLRKSSYRVTAV-P--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 30 m~lrVLLVDDD~-~~r~lL~~lL~~~Gy~V~~A-~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
...+++||.+.+ .....+..+....+ .++.. . +.++..+++.. .|++|+-... +.-|+-+++.+..
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma~---- 353 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMCL---- 353 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHHT----
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHHC----
Confidence 457888888765 34477788887777 44433 3 56667777753 6888875543 4456778888742
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
.+|||.. ... ...+.+..| .++++.|-+.++|...|..++.
T Consensus 354 -G~Pvi~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 354 -GAIPIAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp -TCEEEEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred -CCCeEEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 5788863 322 333444456 8999999999999999998876
No 151
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=71.38 E-value=56 Score=35.69 Aligned_cols=107 Identities=11% Similarity=0.161 Sum_probs=69.3
Q ss_pred hhcCCCEEEEEec----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCC----------
Q 007462 27 LQRMALRVLLVEA----DDSTRQIVTALLRKSS-YRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS---------- 89 (603)
Q Consensus 27 l~~m~lrVLLVDD----D~~~r~lL~~lL~~~G-y~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPg---------- 89 (603)
+.+....+++|+. .......++.+-+..+ ..|+ .+.+.+.|..+++.. .|.|++.+.-..
T Consensus 264 LveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~ 340 (511)
T 3usb_A 264 LVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGV 340 (511)
T ss_dssp HHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCC
T ss_pred HHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhC---CCEEEECCCCccccccccccCC
Confidence 3444577888873 3344455555555543 4444 367888888877753 788887432111
Q ss_pred -CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 90 -ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 90 -mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
...+.++..+.+......+|||.--+-.+...+.+|+.+||+..++-
T Consensus 341 g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 341 GVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 23355555543322123699999888899999999999999998764
No 152
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=70.38 E-value=7.2 Score=39.34 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
++++++||+.. .++|||+|+-+. -...+.+|.++|++++|+-.+..++....+..+
T Consensus 83 ~~~v~~ir~~~--~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQH--PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHC--TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcC--CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 67777777542 478999997543 256788899999999999877777765555444
No 153
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=69.86 E-value=14 Score=35.97 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCceEEE-EeCCC----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 65 LKAWEVLKGRPRNIDLIL-TEVDL----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVL-lDl~M----PgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+.++.+.... ++.|+ .++.- .+. .++++++|++. .++|||...+-.+.+.+.+++..||+++++-
T Consensus 159 ~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 159 RDWVVEVEKRG--AGEILLTSIDRDGTKSGY-DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHTT--CSEEEEEETTTTTTCSCC-CHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHcC--CCEEEEEeecCCCCcCCC-CHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 45445454433 56555 45432 222 37899998754 3799999999999999999999999998765
No 154
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=69.58 E-value=58 Score=32.23 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=60.9
Q ss_pred CCEEEEEec-CHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEA-DDSTRQIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDD-D~~~r~lL~~lL~~~Gy~V~~A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..++++.+. +...+..+..++.... .|... -...+...++.. .|++|+.- |.-+++.+.. .
T Consensus 238 ~~~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~s------g~~~lEA~a~-----G 301 (375)
T 3beo_A 238 DVQVVYPVHMNPVVRETANDILGDYG-RIHLIEPLDVIDFHNVAAR----SYLMLTDS------GGVQEEAPSL-----G 301 (375)
T ss_dssp TEEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----CSEEEECC------HHHHHHHHHH-----T
T ss_pred CeEEEEeCCCCHHHHHHHHHHhhccC-CEEEeCCCCHHHHHHHHHh----CcEEEECC------CChHHHHHhc-----C
Confidence 356555433 2334555666654322 34332 334466666653 68888753 5557777643 5
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|||+....... .+.+..| .++++.| +.++|...|..++.
T Consensus 302 ~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 302 VPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 799876322222 2345678 8999877 99999999988874
No 155
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=69.06 E-value=8.9 Score=36.28 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=55.7
Q ss_pred HHHHhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCC-CCeEEEEecCCCHHHHHHH
Q 007462 49 ALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICK-NIPVIMMSSQDSVSTVYKC 125 (603)
Q Consensus 49 ~lL~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~-~IPVImlSa~~d~~~~~~a 125 (603)
...+..|..+ ..+.+..++.+.++. ..|+|++ .| ...|++.+++|++. .+ ++|||...+-. .+.+.++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~--~~~~ipvia~GGI~-~~~i~~~ 165 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAV--LPSDIAVFAVGGVT-PENLAQW 165 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTT--SCTTCEEEEESSCC-TTTHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHh--ccCCCeEEEeCCCC-HHHHHHH
Confidence 3445567653 347888998877653 3799886 22 12367888888753 23 58999888876 6777888
Q ss_pred HHcCCcEEEeC
Q 007462 126 MMRGAADYLVK 136 (603)
Q Consensus 126 l~~GA~DyL~K 136 (603)
+..||+.+.+-
T Consensus 166 ~~~Ga~gv~vG 176 (212)
T 2v82_A 166 IDAGCAGAGLG 176 (212)
T ss_dssp HHHTCSEEEEC
T ss_pred HHcCCCEEEEC
Confidence 99999999754
No 156
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=67.77 E-value=45 Score=29.09 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
+.+....|.+||.++...+.+. ..|+.++... +-.+.|+.+.- ...|+||+-+.-+ ..-..++..++.. .
T Consensus 26 L~~~g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~~~~-~~n~~~~~~a~~~--~ 96 (140)
T 3fwz_A 26 LLASDIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL--ECAKWLILTIPNG-YEAGEIVASARAK--N 96 (140)
T ss_dssp HHHTTCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG--GGCSEEEECCSCH-HHHHHHHHHHHHH--C
T ss_pred HHHCCCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc--ccCCEEEEECCCh-HHHHHHHHHHHHH--C
Confidence 4445678999999987665443 3578766533 33344544322 2378888754322 1223344455443 3
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 106 ~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+.+.||.... +.........+|++..+.
T Consensus 97 ~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 97 PDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp SSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred CCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 5677776554 455556677899987663
No 157
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=67.33 E-value=2.3 Score=42.83 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=35.4
Q ss_pred CCEEEEEecC--HHHHHHHHHHHHhCCCEEEEECCHH--HHHHHHhcCCCCceEEEEe
Q 007462 31 ALRVLLVEAD--DSTRQIVTALLRKSSYRVTAVPDGL--KAWEVLKGRPRNIDLILTE 84 (603)
Q Consensus 31 ~lrVLLVDDD--~~~r~lL~~lL~~~Gy~V~~A~dg~--eALe~L~~~~~~pDLVLlD 84 (603)
+.+||||+++ +.-...|..+|+..||+|....... .-.+.|. .+|+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 3699999988 6677889999999999887755321 1123443 28999886
No 158
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=67.20 E-value=30 Score=35.13 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
..+.|-++-.++.....+..+|...-|.++.+.+..+-++.++...+.+|.+|+... +..-..++..|.+.. --+|
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g--~lLP 83 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEG--VVVP 83 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTT--CCCC
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcC--cccc
Confidence 357888889999999999999988889999999999999999888888999998751 334677888887665 3579
Q ss_pred EEEEecC
Q 007462 110 VIMMSSQ 116 (603)
Q Consensus 110 VImlSa~ 116 (603)
+|++-..
T Consensus 84 ~vil~~~ 90 (289)
T 1r8j_A 84 AIVVGDR 90 (289)
T ss_dssp EEEESCC
T ss_pred EEEeccC
Confidence 9988664
No 159
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=66.95 E-value=10 Score=38.73 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=49.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHh
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVME 101 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~ 101 (603)
-++.+||-++.....|++.+....--.+...|+.+++..+......+||||+|=--. ..+.-.+++.|.+
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 699999999999999999987643233445789999887765434589999995332 2345566666644
No 160
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=66.92 E-value=72 Score=32.16 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=64.3
Q ss_pred HHHHHHhCCC-EEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 007462 47 VTALLRKSSY-RVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 47 L~~lL~~~Gy-~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
|++.|+. |. .+. .-.+..+.++.+.... +|.||+|+.-.-.+--.+...++.... ...++++=+...+...+.
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~G--aD~v~lDlEh~~~~~~~~~~~l~a~~~-~~~~~~VRv~~~d~~di~ 105 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGAG--FDWLLIDGEHAPNNVQTVLTQLQAIAP-YPSQPVVRPSWNDPVQIK 105 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTSC--CSEEEEESSSSSCCHHHHHHHHHHHTT-SSSEEEEECSSSCHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhCC--CCEEEEeCCCccchHHHHHHHHHHHHh-cCCCEEEEECCCCHHHHH
Confidence 5566654 44 332 2234455556666544 999999997665555555555543332 356788888777888899
Q ss_pred HHHHcCCcEEEe-CCCCHHHHHHHHHH
Q 007462 124 KCMMRGAADYLV-KPVRRNELRNLWQH 149 (603)
Q Consensus 124 ~al~~GA~DyL~-KP~~~~eL~~~L~~ 149 (603)
.+++.|++.+++ |--+.++++.+++.
T Consensus 106 ~~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 106 QLLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 999999988654 44467887766554
No 161
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=66.48 E-value=35 Score=32.82 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=55.3
Q ss_pred CHHHHHHHHhcCCCCce-EEEEeCC----CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc-----C-Cc
Q 007462 63 DGLKAWEVLKGRPRNID-LILTEVD----LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR-----G-AA 131 (603)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~----MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~-----G-A~ 131 (603)
+..+..+.+.+.. ++ |++.++. +.+. .++++++|++.- ++|||...+-.+.+.+.++++. | |+
T Consensus 145 ~~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~---~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad 218 (241)
T 1qo2_A 145 DPVSLLKRLKEYG--LEEIVHTEIEKDGTLQEH-DFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp CHHHHHHHHHTTT--CCEEEEEETTHHHHTCCC-CHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecccccCCcC-CHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence 4455555555433 67 5556653 2333 388999997643 7899999999999999999998 9 99
Q ss_pred EEEeC------CCCHHHHHHH
Q 007462 132 DYLVK------PVRRNELRNL 146 (603)
Q Consensus 132 DyL~K------P~~~~eL~~~ 146 (603)
++++- +++..+++..
T Consensus 219 gv~vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 219 GVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp EEEECHHHHTTSSCHHHHHHH
T ss_pred EEEeeHHHHcCCCCHHHHHHH
Confidence 98764 7777776654
No 162
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=66.48 E-value=20 Score=33.53 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=51.1
Q ss_pred EECCHHHHHHHHhcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcE
Q 007462 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (603)
Q Consensus 60 ~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-------mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~D 132 (603)
.+.+..++...... .+|.|+++-..|. .-+++.++++++.. ++||++..+-. .+.+.+++..|++.
T Consensus 114 ~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~~~~~~Ga~g 186 (215)
T 1xi3_A 114 SVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAREVLKTGVDG 186 (215)
T ss_dssp EESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHHHHHTTTCSE
T ss_pred ecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHHHHHHcCCCE
Confidence 36788887765543 2899998764553 34788999887542 78998877766 77777888999999
Q ss_pred EEeC
Q 007462 133 YLVK 136 (603)
Q Consensus 133 yL~K 136 (603)
+.+-
T Consensus 187 v~vg 190 (215)
T 1xi3_A 187 IAVI 190 (215)
T ss_dssp EEES
T ss_pred EEEh
Confidence 8643
No 163
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=65.74 E-value=41 Score=31.75 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=57.9
Q ss_pred HHHHHHHHHhC-CCEE-EEECCHHHHHHHHhcCCCCceEEEEeCC-----CC----CCCHHHHHHHHHhcccCCCCeEEE
Q 007462 44 RQIVTALLRKS-SYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVD-----LP----SISGFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 44 r~lL~~lL~~~-Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~-----MP----gmDGleLLr~Lr~~~~~~~IPVIm 112 (603)
.+.++.+-+.. |..+ ..+.+..++.++.+.. .|+|.+-.. .. ...++++++++++. -++|||.
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~G---~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~---~~ipvia 180 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARLG---FDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIA 180 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTT---CSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEE
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHcC---CCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh---CCCCEEE
Confidence 34444444332 5554 3467888887765532 688764321 01 12246788888754 2699999
Q ss_pred EecCCCHHHHHHHHHcCCcEEEeC
Q 007462 113 MSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~K 136 (603)
..+-.+.+.+.+++..||+.+++-
T Consensus 181 ~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 181 EGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCCCCHHHHHHHHHcCCCEEEEC
Confidence 888889999999999999999864
No 164
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=65.68 E-value=13 Score=35.99 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d------~~~~~~al~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
+++++++|++. .++||++++.... ...+..+++.||+.+++-.+...+...+++
T Consensus 68 ~~~~i~~i~~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 68 AFWIVKEFRRH---SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHHTT---CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHHhh---CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 37788888764 2679998874333 577888999999999986555554444433
No 165
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=65.50 E-value=58 Score=34.13 Aligned_cols=93 Identities=13% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCC---------C--CCCHHHHHHHHHhcccCC
Q 007462 41 DSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL---------P--SISGFALLTLVMEHEICK 106 (603)
Q Consensus 41 ~~~r~lL~~lL~~~-Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~M---------P--gmDGleLLr~Lr~~~~~~ 106 (603)
....+.++.+-+.. +..|+ .+.+.++|..+.+. .+|.|++-..- . +.-.++.+..+.+.....
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~---Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT---TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc---CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34455555444444 66665 36788777766653 37988882110 0 222456666665422123
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++|||...+-.+...+.+++.+||+...+-
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~iG 285 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhhC
Confidence 799999889889999999999999988753
No 166
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=65.50 E-value=85 Score=32.50 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=66.3
Q ss_pred CEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCC------------CCH
Q 007462 32 LRVLLVE----ADDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------------ISG 92 (603)
Q Consensus 32 lrVLLVD----DD~~~r~lL~~lL~~~-Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPg------------mDG 92 (603)
..++.++ +.....+.++.+-+.. +..|+ .+.+.++|..+++.. .|.|++-.. |+ ..-
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aG---aD~I~v~~g-~G~~~~~r~~~g~~~p~ 208 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSG---ADIIKVGIG-PGSVCTTRKKTGVGYPQ 208 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTBCHHHHHCBCCCH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCcCccccCCCCccH
Confidence 5666676 3334455565554554 55544 478899998887753 798877431 22 223
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe-CCC
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-KPV 138 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~-KP~ 138 (603)
+.++..+.+.....++|||.-.+-.+...+.+|+.+||+...+ +||
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 4455555432111369999988999999999999999988754 455
No 167
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=64.78 E-value=23 Score=34.14 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=47.1
Q ss_pred CHHHHHHHHhcCCCCce-EEEEeCCCCCCC---HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 63 DGLKAWEVLKGRPRNID-LILTEVDLPSIS---GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MPgmD---GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+..+.+.... .| |.+.|....+.. -++++++|++. .++|||+.....+.+.+.+++..||+..++-
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 4555555554332 44 455676544333 24556777643 4799999999999999999999999988764
No 168
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=64.73 E-value=93 Score=30.81 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=63.8
Q ss_pred HHHHHHhCCC---EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 007462 47 VTALLRKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 47 L~~lL~~~Gy---~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
|++.|+. |. .+...-...+.++.+.... +|.||+|+.-.-.+--++...++.... ...++++=+...+...+.
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~G--aD~v~lDlE~~~~~~~~~~~~~~a~~~-~~~~~~VRv~~~~~~~i~ 84 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAVAP-YASQPVIRPVEGSKPLIK 84 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTTC--CSEEEEETTTSCCCHHHHHHHHHHHTT-SSSEEEEECSSCCHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHH
Confidence 5555654 43 2232234455556666544 999999997655555555555544332 356777777777888899
Q ss_pred HHHHcCCcEEEe-CCCCHHHHHHHHHHH
Q 007462 124 KCMMRGAADYLV-KPVRRNELRNLWQHV 150 (603)
Q Consensus 124 ~al~~GA~DyL~-KP~~~~eL~~~L~~v 150 (603)
.++..|++.+++ |--+.++++.+++.+
T Consensus 85 ~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred HHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 999999987654 444678877665543
No 169
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=64.69 E-value=52 Score=33.55 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=59.6
Q ss_pred HHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCC-CC----CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHH
Q 007462 49 ALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDL-PS----ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTV 122 (603)
Q Consensus 49 ~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~M-Pg----mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~ 122 (603)
..|+..|..|.. +.+.++|..+.+. .+|.|+++=.- .+ ...++++.+++.. .++|||+-.+-.+.+.+
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPviaaGGI~~~~dv 191 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGRGM 191 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEEECCCCCHHHH
Confidence 445556776554 6788888776653 27888885322 22 3468888888753 27899998888889999
Q ss_pred HHHHHcCCcEEEeC
Q 007462 123 YKCMMRGAADYLVK 136 (603)
Q Consensus 123 ~~al~~GA~DyL~K 136 (603)
.+++.+||+.+.+-
T Consensus 192 ~~al~~GA~gV~vG 205 (326)
T 3bo9_A 192 AAAFALGAEAVQMG 205 (326)
T ss_dssp HHHHHHTCSEEEES
T ss_pred HHHHHhCCCEEEec
Confidence 99999999998764
No 170
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=64.50 E-value=57 Score=33.72 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=56.0
Q ss_pred hCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCC---------C-----C--CCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 53 KSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDL---------P-----S--ISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 53 ~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~M---------P-----g--mDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
..|..|. .+.+..+|....+. .+|.|+++-.- + + ...++++++++.. .++|||+..+
T Consensus 143 ~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---~~iPViaaGG 216 (369)
T 3bw2_A 143 RAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVAAGG 216 (369)
T ss_dssp HTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEEESS
T ss_pred HCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---cCceEEEECC
Confidence 3566544 46788887766653 27999985311 1 0 2348889998764 3789998888
Q ss_pred CCCHHHHHHHHHcCCcEEEeC
Q 007462 116 QDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (603)
-.+.+.+.+++.+||+.+.+-
T Consensus 217 I~~~~~~~~~l~~GAd~V~vG 237 (369)
T 3bw2_A 217 IMRGGQIAAVLAAGADAAQLG 237 (369)
T ss_dssp CCSHHHHHHHHHTTCSEEEES
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 889999999999999888753
No 171
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=64.29 E-value=14 Score=36.79 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
++++++.|++.. .++||++|+-.. -...+..+.+.|++++++-.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~~--~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 81 CFEMLAIIREKH--PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHHC--SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 456778887541 368999886322 256777899999999999877777766555544
No 172
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=64.20 E-value=1.1e+02 Score=32.00 Aligned_cols=99 Identities=11% Similarity=0.064 Sum_probs=63.7
Q ss_pred CCCEEEEEec----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCCC------------
Q 007462 30 MALRVLLVEA----DDSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSI------------ 90 (603)
Q Consensus 30 m~lrVLLVDD----D~~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPgm------------ 90 (603)
....++.||- .....+.++.+-+.. +..|+. +.+.++|..+++.. .|.|++... |+.
T Consensus 111 aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aG---aD~I~Vg~g-~G~~~~tr~~~g~g~ 186 (361)
T 3r2g_A 111 AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCG---ADIIKAGIG-GGSVCSTRIKTGFGV 186 (361)
T ss_dssp TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTT---CSEEEECCS-SSSCHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcC---CCEEEEcCC-CCcCccccccCCccH
Confidence 3467888872 233333444333332 566554 78999998887753 799998533 332
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.-++.+..+... .. |||.--+-.+...+.+++.+||+..++-
T Consensus 187 p~l~aI~~~~~~---~~-PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 187 PMLTCIQDCSRA---DR-SIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp CHHHHHHHHTTS---SS-EEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHh---CC-CEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 234444444322 12 9998888889999999999999888754
No 173
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=64.01 E-value=42 Score=30.04 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=70.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHH--hC----CCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 31 ALRVLLVEADDSTRQIVTALLR--KS----SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~--~~----Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
..+++||.+.+.. ..+..++. .. .+.+...-+..+..+++.. .|++|+=.. ...-|+-+++.+.
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama---- 119 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA---- 119 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH----
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH----
Confidence 4688888764432 23344443 21 2344445566777788865 588887332 2334677888774
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
..+|||+.. .....+.+..|..++++ |-+.++|...|..++...
T Consensus 120 -~G~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 120 -SGKPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp -TTCCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred -cCCcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 367888643 24455566678899999 999999999999887543
No 174
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=64.01 E-value=32 Score=35.38 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=62.8
Q ss_pred cchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 21 AKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 21 v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
.+|..+|. +++|.||.--..-...+...|...+++++.+. +.+.|-+..+... ..-+..| - +.
T Consensus 18 ~~~~~Mm~--~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~--~~~~~~~-------~----~~ 82 (361)
T 3u3x_A 18 LYFQSMMD--ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA--DARRIAT-------A----EE 82 (361)
T ss_dssp ----------CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS--SCCEESC-------H----HH
T ss_pred chhhhhcc--CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC--CCcccCC-------H----HH
Confidence 45655542 47999999764443444555556789877643 4444544444321 1112222 2 23
Q ss_pred HHhcccCCCCeEEEEecC--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 007462 99 VMEHEICKNIPVIMMSSQ--DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa~--~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~ 151 (603)
|-.. +++-+|+++.. ...+.+..|+++|..=|+-||+ +.++...+++.+.
T Consensus 83 ll~~---~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 83 ILED---ENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp HHTC---TTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred HhcC---CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3222 23445544443 4677888999999999999997 6777777776553
No 175
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=63.87 E-value=62 Score=33.60 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCEEEEEecCH-HHHHHHHHHHHhCCCEEE-E-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADD-STRQIVTALLRKSSYRVT-A-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~-~~r~lL~~lL~~~Gy~V~-~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+++||.+.+ ..+..|+.+....+-.|. . -.+.++..+++.. .|++|+=-.. ..-|+-+++.+.. .
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma~-----G 389 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALRY-----G 389 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHHH-----T
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHHC-----C
Confidence 67889998765 467778888777654443 2 2344544577764 5888874432 3446678887743 5
Q ss_pred CeEEEEecCCCHHHHHHHHHcC---------CcEEEeCCCCHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRG---------AADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~G---------A~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+|||+.. .....+.+..| ..+|++.|-+.++|...|..++
T Consensus 390 ~PvI~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 390 CIPVVAR----TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp CEEEEES----SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred CCEEEeC----CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 7888642 23445566666 8899999999999999998886
No 176
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=63.64 E-value=24 Score=35.72 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=61.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
|+++|.||.--..-...+..+....+++++.+ . +...+-+..+... ..-+..| --+++. . ++
T Consensus 1 M~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~~~-------~~~ll~----~---~~ 64 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLG--VEKAYKD-------PHELIE----D---PN 64 (344)
T ss_dssp -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHT--CSEEESS-------HHHHHH----C---TT
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhC--CCceeCC-------HHHHhc----C---CC
Confidence 56799999987666665655555557787754 3 4444434333211 2223322 122222 1 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
+-+|+++. ....+.+..|++.|..=|+.||+ +.++...+++.+.+
T Consensus 65 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 65 VDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444443 33567788899999998999994 66777776665543
No 177
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=63.47 E-value=21 Score=34.45 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=58.8
Q ss_pred EEEEEecCH-HHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHhcCCCCce-EEEEeCCCCCCC---------HHHHHHH
Q 007462 33 RVLLVEADD-STRQIVTALLRKSSYRVTA-VP--DGLKAWEVLKGRPRNID-LILTEVDLPSIS---------GFALLTL 98 (603)
Q Consensus 33 rVLLVDDD~-~~r~lL~~lL~~~Gy~V~~-A~--dg~eALe~L~~~~~~pD-LVLlDl~MPgmD---------GleLLr~ 98 (603)
..+++.+.+ .....+..++++.|..+.. +. +..++++.+... .| +|.+ +..|+.. +++++++
T Consensus 110 d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~ 185 (248)
T 1geq_A 110 DGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRR 185 (248)
T ss_dssp CEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHH
T ss_pred CEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHH
Confidence 444444422 2233455555666766443 32 556666666543 34 5544 3335433 3567788
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
|++.. ++||++-.+-...+.+.+++.+||+.+++-
T Consensus 186 l~~~~---~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 186 AKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHhhc---CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 87542 689988888888788999999999999875
No 178
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=63.34 E-value=1.1e+02 Score=30.80 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=67.4
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHhcCCCCceEEEEe---CCCCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEA--DDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTE---VDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDD--D~~~r~lL~~lL~~~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlD---l~MPgmDGleLLr~Lr~~~~~~ 106 (603)
-|||+-. ++.....|..+-..+|.+ ++.+.+.+|+-..+... .+||=++ +.--..| ++...+|... ...
T Consensus 129 aILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~---a~iIGINNRnL~tf~vd-l~~t~~L~~~-ip~ 203 (258)
T 4a29_A 129 TVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIG---ARFIGIMSRDFETGEIN-KENQRKLISM-IPS 203 (258)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTT---CSEEEECSBCTTTCCBC-HHHHHHHHTT-SCT
T ss_pred eeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCC---CcEEEEeCCCccccccC-HHHHHHHHhh-CCC
Confidence 4555543 344455566666788987 45699999988877743 6777542 3333344 3444555432 235
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++.+|.-|+-.+.+.+.+....|++.||+-
T Consensus 204 ~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 204 NVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 677888889999999999999999999986
No 179
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=63.30 E-value=53 Score=34.11 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=73.1
Q ss_pred CCEEEEEecCH-HHHHHHHHHHHhCCCEEE-EE-CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADD-STRQIVTALLRKSSYRVT-AV-PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~-~~r~lL~~lL~~~Gy~V~-~A-~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+++||.+.+ .....|+.+....+-.|. .. ....+..+++.. .|++|+=-. ...-|+-+++.+.. .
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma~-----G 390 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLKY-----G 390 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHHH-----T
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHHC-----C
Confidence 67888888754 467778888777654443 32 244444567764 588887543 23446778887743 5
Q ss_pred CeEEEEecCCCHHHHHHHHHcC---------CcEEEeCCCCHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRG---------AADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~G---------A~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+|||+.. ..-..+.+..| ..+||+.|-+.++|...|..++
T Consensus 391 ~PvI~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 391 TLPLVRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp CEEEEES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred CCEEECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 7888642 23445566666 8999999999999999998886
No 180
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=63.18 E-value=24 Score=38.56 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=48.5
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+..+.++.|.+.. +|+|++|...+...+ ++++++|++.. +++|||+ ......+.+..+.++||+.+.+
T Consensus 256 d~~era~aLveaG--vd~I~Id~a~g~~~~v~~~i~~i~~~~--~~~~vi~-g~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVKAS--VDAIVLDTAHGHSQGVIDKVKEVRAKY--PSLNIIA-GNVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHhhc--cceEEecccccchhhhhhHHHHHHHhC--CCceEEe-eeeccHHHHHHHHHhCCCEEEE
Confidence 3344444454443 899999998876555 46888887643 5678775 3445788899999999998875
No 181
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=62.90 E-value=32 Score=35.08 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCEEEEEecC---HHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 31 ALRVLLVEAD---DSTRQIVTALLRKSSY--RVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 31 ~lrVLLVDDD---~~~r~lL~~lL~~~Gy--~V~~A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
..+++||.+. ......+..++...|. .|... -+..+..+++.. .|++|+-.. .+.-|+-+++.+.
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--- 347 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--- 347 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH---
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH---
Confidence 4688888872 2345667777776654 34443 355777788865 588876442 2334677888774
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
..+|||+.. ... ..+.+..|..++++.|-+.++|...|..++..
T Consensus 348 --~G~PvI~~~-~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 348 --SGTPVIAAR-VGG---LPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp --TTCCEEEES-CTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred --cCCCEEecC-CCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 367887643 322 33455678889999999999999999988753
No 182
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=62.54 E-value=16 Score=34.39 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=34.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl 83 (603)
|..+|+|||=-.-....+...|+++|+++..+.+.++. .. +|.||+
T Consensus 1 M~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 1 MTQNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp --CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 55689999976666677888899999999888876543 22 687776
No 183
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=62.36 E-value=49 Score=33.76 Aligned_cols=81 Identities=21% Similarity=0.156 Sum_probs=57.3
Q ss_pred HHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 007462 50 LLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 50 lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MP-----gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
.++..|+.|.. +.+.++|..+.+. . +|.|+++=.-. ....+++++++++. .++|||+..+-.+.+.+.
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~~~-G--aD~i~v~g~~~GG~~g~~~~~~ll~~i~~~---~~iPViaaGGI~~~~~~~ 178 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRMEKI-G--ADAVIAEGMEAGGHIGKLTTMTLVRQVATA---ISIPVIAAGGIADGEGAA 178 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT-T--CSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHHH
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc-C--CCEEEEECCCCCCCCCCccHHHHHHHHHHh---cCCCEEEECCCCCHHHHH
Confidence 34445776554 6777777665543 2 78888863211 13468889988764 369999988888899999
Q ss_pred HHHHcCCcEEEeC
Q 007462 124 KCMMRGAADYLVK 136 (603)
Q Consensus 124 ~al~~GA~DyL~K 136 (603)
+++.+||+...+-
T Consensus 179 ~al~~GAdgV~vG 191 (332)
T 2z6i_A 179 AGFMLGAEAVQVG 191 (332)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHHcCCCEEEec
Confidence 9999999988653
No 184
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=62.28 E-value=57 Score=32.36 Aligned_cols=101 Identities=10% Similarity=0.078 Sum_probs=65.3
Q ss_pred HHHHHHhCCCE--EEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 007462 47 VTALLRKSSYR--VTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 47 L~~lL~~~Gy~--V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
|+..|..-... +.... +..+.++.+.... +|.||+|++---.+.-.+...|+.... ..+++++=....+...+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~g--~D~vilDlEhav~~~~k~~~~l~a~~~-~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAG--LDYFIVDCEHAAYTFREINHLVSVAKN-AGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHTT--CSEEEEESSSSCCCHHHHHHHHHHHHH-HTCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcCC--cCEEEEeccCCCCCHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHH
Confidence 45566543222 22223 4455666666544 999999998877776666666654332 245556555556778899
Q ss_pred HHHHcCCcEEEe-CCCCHHHHHHHHHHH
Q 007462 124 KCMMRGAADYLV-KPVRRNELRNLWQHV 150 (603)
Q Consensus 124 ~al~~GA~DyL~-KP~~~~eL~~~L~~v 150 (603)
.++..|++.+++ |--+.++++.++..+
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 999999998764 444678887766544
No 185
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=62.08 E-value=19 Score=34.93 Aligned_cols=100 Identities=10% Similarity=0.099 Sum_probs=65.8
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCC-----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 47 VTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL-----PSISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 47 L~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~M-----PgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
.-..|+..|+.+.. +..|...+..|.... ||.|=+|-.+ .+.....+++.|.......++.| +..+..+.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~v-iaeGVEt~ 220 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV-VAEGVENA 220 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEE-EECCCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeE-EEEeCCCH
Confidence 34456778998765 567777888888765 9999999522 12223445555543222234544 46778889
Q ss_pred HHHHHHHHcCCcEE----EeCCCCHHHHHHHHHH
Q 007462 120 STVYKCMMRGAADY----LVKPVRRNELRNLWQH 149 (603)
Q Consensus 120 ~~~~~al~~GA~Dy----L~KP~~~~eL~~~L~~ 149 (603)
+....+..+|++.+ +.||...+++...+..
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 99999999997643 6799999999877654
No 186
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=61.90 E-value=1.1e+02 Score=32.97 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=69.1
Q ss_pred CCEEEEEe----cCHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCCCC------------CC
Q 007462 31 ALRVLLVE----ADDSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS------------IS 91 (603)
Q Consensus 31 ~lrVLLVD----DD~~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~MPg------------mD 91 (603)
...+++|+ ......+.++.+-... +..|+. +.+.++|..+++.. .|.|++-.. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAG---ADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcC---CCEEEECCC-CCcCCCccccCCCCcc
Confidence 45677776 4455556666666655 545443 67888888877643 798887321 21 23
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.++++..+.+.....++|||.-.+-.....+.+++.+||+..++-
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 456666665432223799999888889999999999999988764
No 187
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=61.49 E-value=17 Score=33.21 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=38.9
Q ss_pred hhhcCCCEEEEEecCHHHHHHHHHHHH--hCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 26 FLQRMALRVLLVEADDSTRQIVTALLR--KSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 26 fl~~m~lrVLLVDDD~~~r~lL~~lL~--~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
.+.+...+||+||-|+.. .+..++. ..++.+..+.. ....+.+......+|+||+|.- |+. +......+.
T Consensus 25 ~la~~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~-~~~-~~~~~~~l~ 96 (206)
T 4dzz_A 25 ALSRSGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGA-GSL-SVITSAAVM 96 (206)
T ss_dssp HHHHTTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECC-SSS-SHHHHHHHH
T ss_pred HHHHCCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECC-CCC-CHHHHHHHH
Confidence 344566899999998642 3344443 34567776543 3333333322234999999963 334 334444443
No 188
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=60.97 E-value=13 Score=36.46 Aligned_cols=108 Identities=12% Similarity=0.116 Sum_probs=62.3
Q ss_pred chHHhhhcCCCEEEEEecCH-HHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCCCCCH-----
Q 007462 22 KWETFLQRMALRVLLVEADD-STRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSISG----- 92 (603)
Q Consensus 22 ~we~fl~~m~lrVLLVDDD~-~~r~lL~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MPgmDG----- 92 (603)
.|+.|...- ..++.|-.+. .....+...++..|..+..+- +..+.++.+.. .+|.|++.-..||..|
T Consensus 79 ~i~~~~~aG-ad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~---~~D~Vl~msv~pGf~Gq~f~~ 154 (228)
T 3ovp_A 79 WVKPMAVAG-ANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWAN---QIDMALVMTVEPGFGGQKFME 154 (228)
T ss_dssp GHHHHHHHT-CSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGG---GCSEEEEESSCTTTCSCCCCG
T ss_pred HHHHHHHcC-CCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhc---cCCeEEEeeecCCCCCcccCH
Confidence 466665433 2333333221 112333444567787654432 34444443332 2799998777888766
Q ss_pred --HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 93 --FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 93 --leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++-+++|++. ..+++|. +.+--..+.+..+.++||+-+++-
T Consensus 155 ~~l~ki~~lr~~--~~~~~I~-VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 155 DMMPKVHWLRTQ--FPSLDIE-VDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp GGHHHHHHHHHH--CTTCEEE-EESSCSTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHh--cCCCCEE-EeCCcCHHHHHHHHHcCCCEEEEe
Confidence 4446666653 2455654 455556788889999999998764
No 189
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=60.92 E-value=34 Score=32.82 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=53.0
Q ss_pred CHHHHHHHHhcCCCCce-EEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc---CCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNID-LILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR---GAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MPgm---DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~---GA~DyL~ 135 (603)
+..+.++.+.... +| |+++++.-.++ -.++++++|++. .++|||...+-.+.+.+.+++++ ||+.+++
T Consensus 147 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~i~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNKEG--CARYVVTDIAKDGTLQGPNLELLKNVCAA---TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHHTT--CCCEEEEEC-------CCCHHHHHHHHHT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEeccCcccccCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 4556555554433 67 55566542221 137889998754 36999999998899999999999 9999876
Q ss_pred C------CCCHHHHHHHH
Q 007462 136 K------PVRRNELRNLW 147 (603)
Q Consensus 136 K------P~~~~eL~~~L 147 (603)
- |+...++...+
T Consensus 222 G~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 222 GKALYAKAFTLEEALEAT 239 (244)
T ss_dssp CHHHHTTSSCHHHHHHHH
T ss_pred eHHHHcCCCCHHHHHHHh
Confidence 4 66665555443
No 190
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=60.39 E-value=51 Score=32.64 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=54.5
Q ss_pred CEEEEE-ecCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLV-EADDST---RQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLV-DDD~~~---r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+| +|+..- ...++..|+..|..++. . .+...++..+.... +|+||+.. .+.+...+++.++
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~ 215 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAK--PDAMFVFV--PAGQGGNFMKQFA 215 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHC--CSEEEEEC--CTTCHHHHHHHHH
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcC--CCEEEEec--cchHHHHHHHHHH
Confidence 355555 444433 45566777788887653 1 36677777776644 89999854 3448899999998
Q ss_pred hcccCCC-CeEEEEecCCCHHH
Q 007462 101 EHEICKN-IPVIMMSSQDSVST 121 (603)
Q Consensus 101 ~~~~~~~-IPVImlSa~~d~~~ 121 (603)
+...... +|||......+...
T Consensus 216 ~~g~~~~~v~~~~~~~~~~~~~ 237 (368)
T 4eyg_A 216 ERGLDKSGIKVIGPGDVMDDDL 237 (368)
T ss_dssp HTTGGGTTCEEEEETTTTCHHH
T ss_pred HcCCCcCCceEEecCcccCHHH
Confidence 7654433 77776553344443
No 191
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=59.93 E-value=32 Score=38.45 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=72.6
Q ss_pred CCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 007462 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLV----DDD~~~r~lL~~lL~~~Gy~V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~ 101 (603)
..+|||. |-+..=..++..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..|.. +. --++++.|++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4588888 667777888999999999999763 36677777777654 999999887653 22 2356677766
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHc-----CCcEEEeCCCCHHHHHHHHHHH
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMR-----GAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~-----GA~DyL~KP~~~~eL~~~L~~v 150 (603)
.. .++|||+--......... ... ||+.|-. +..+...+...+
T Consensus 176 ~g--~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~---DA~~Av~~a~~l 222 (579)
T 3bul_A 176 QG--FTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQ---NASRTVGVVAAL 222 (579)
T ss_dssp TT--CCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECC---SHHHHHHHHHHH
T ss_pred cC--CCCeEEEEccccchhhhh--hhhhhcccCCeEEEC---CHHHHHHHHHHH
Confidence 43 478887655555555432 123 8877654 334444444443
No 192
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=59.69 E-value=50 Score=33.37 Aligned_cols=108 Identities=15% Similarity=0.238 Sum_probs=63.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHH-HhCCCEEEEEC--CHHHHHHHHhcCCCCce-EEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 30 MALRVLLVEADDSTRQIVTALL-RKSSYRVTAVP--DGLKAWEVLKGRPRNID-LILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL-~~~Gy~V~~A~--dg~eALe~L~~~~~~pD-LVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
|+++|.||.--..-...+..+. ...+++++.+. +.+.+-+..+... ++ -+..| --+++. .
T Consensus 1 M~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g--~~~~~~~~-------~~~ll~----~--- 64 (344)
T 3mz0_A 1 MSLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQ--LNATVYPN-------DDSLLA----D--- 64 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTT--CCCEEESS-------HHHHHH----C---
T ss_pred CeEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhC--CCCeeeCC-------HHHHhc----C---
Confidence 5679999998776666666666 34678877543 3343434433321 21 22222 122222 2
Q ss_pred CCCeEEEEe--cCCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 106 KNIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 106 ~~IPVImlS--a~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+++-+|+++ .....+.+..|++.|..=|+.||+ +.++...+++.+.+.
T Consensus 65 ~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~ 116 (344)
T 3mz0_A 65 ENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 233344443 344677888999999988999996 567777777655443
No 193
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=59.64 E-value=31 Score=34.04 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+++||.+.+ ...+..+++..|. .|.......+..+++.. .|++|+-... ..-|+-+++.+.. .+
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a~-----G~ 295 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAITA-----GL 295 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHHH-----TC
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHHC-----CC
Confidence 45888888754 2456666665553 35554444555666654 5788875432 3447778888743 57
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeC-CCCHHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVK-PVRRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~K-P~~~~eL~~~L~~v~r 152 (603)
|||........ +.+..|..++++. |.+.++|...|..++.
T Consensus 296 Pvi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 296 PVLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp CEEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred CEEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 88875433322 3345567889998 9999999999998875
No 194
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=59.49 E-value=49 Score=32.82 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHhcCCCCceEEEE---------eCCC--C-------CCCH-------
Q 007462 43 TRQIVTALLRKSSYRVTA-----VPDGLKAWEVLKGRPRNIDLILT---------EVDL--P-------SISG------- 92 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~-----A~dg~eALe~L~~~~~~pDLVLl---------Dl~M--P-------gmDG------- 92 (603)
..+.++.+-+..++.|.. +.+..+..+.+.+.. .|.|++ +..- | +..|
T Consensus 152 ~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~ 229 (311)
T 1ep3_A 152 AAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVA 229 (311)
T ss_dssp HHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHH
Confidence 344555544444654442 235566556666544 788877 3311 1 1222
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC------CCCHHHHHHHHHHHH
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK------PVRRNELRNLWQHVW 151 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K------P~~~~eL~~~L~~v~ 151 (603)
+++++++++. .++|||..-+..+.+.+.+++.+||+...+- |....++..-+..++
T Consensus 230 ~~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~ 291 (311)
T 1ep3_A 230 LKLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELM 291 (311)
T ss_dssp HHHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHH
Confidence 4778888753 3799998888889999999999999887543 555555555555444
No 195
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=59.12 E-value=42 Score=32.19 Aligned_cols=109 Identities=9% Similarity=0.091 Sum_probs=62.5
Q ss_pred hHHhhhcCCCEEEEEecCH--HH-HHHHHHHHHhCCCEEEE-E--CCHHHHHHHHhcCCCCceEEEEeCCCCCCC-----
Q 007462 23 WETFLQRMALRVLLVEADD--ST-RQIVTALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSIS----- 91 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD~--~~-r~lL~~lL~~~Gy~V~~-A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmD----- 91 (603)
++.+.. .....+.+-+.+ .. ...++ .++..|..+.. + .+..+.++.+.......|.|+++-..|+..
T Consensus 80 i~~~~~-agad~v~vH~~~~~~~~~~~~~-~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~ 157 (228)
T 1h1y_A 80 VEPLAK-AGASGFTFHIEVSRDNWQELIQ-SIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFM 157 (228)
T ss_dssp HHHHHH-HTCSEEEEEGGGCTTTHHHHHH-HHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCC
T ss_pred HHHHHH-cCCCEEEECCCCcccHHHHHHH-HHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCC
Confidence 555554 334444443332 22 33333 34455765543 3 344455555543100279999988877633
Q ss_pred --HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 92 --GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 92 --GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+++.++++++.. +++||++.-+-.. +.+.++...||+.+++-
T Consensus 158 ~~~l~~i~~~~~~~--~~~pi~v~GGI~~-~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 158 PEMMEKVRALRKKY--PSLDIEVDGGLGP-STIDVAASAGANCIVAG 201 (228)
T ss_dssp GGGHHHHHHHHHHC--TTSEEEEESSCST-TTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHhc--CCCCEEEECCcCH-HHHHHHHHcCCCEEEEC
Confidence 466677776542 3788776665544 67778888899998764
No 196
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=58.42 E-value=31 Score=33.04 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCCCce-EEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc---CCcEEEeC
Q 007462 64 GLKAWEVLKGRPRNID-LILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR---GAADYLVK 136 (603)
Q Consensus 64 g~eALe~L~~~~~~pD-LVLlDl~MPgm---DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~---GA~DyL~K 136 (603)
..+.++.+.... +| |++++....++ -.++++++|++. .++|||...+-.+.+.+.++++. ||+.+++-
T Consensus 151 ~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG 225 (244)
T 2y88_A 151 LWDVLERLDSEG--CSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVG 225 (244)
T ss_dssp HHHHHHHHHHTT--CCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred HHHHHHHHHhCC--CCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEc
Confidence 355555555443 66 44567654322 247888888753 37999999998898999999998 99998764
Q ss_pred ------CCCHHHHHH
Q 007462 137 ------PVRRNELRN 145 (603)
Q Consensus 137 ------P~~~~eL~~ 145 (603)
|+...+++.
T Consensus 226 ~al~~~~~~~~~~~~ 240 (244)
T 2y88_A 226 KALYARRFTLPQALA 240 (244)
T ss_dssp HHHHTTSSCHHHHHH
T ss_pred HHHHCCCcCHHHHHH
Confidence 666555544
No 197
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=58.23 E-value=88 Score=33.83 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=68.2
Q ss_pred CCCEEEEEe----cCHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCC--------------CC
Q 007462 30 MALRVLLVE----ADDSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD--------------LP 88 (603)
Q Consensus 30 m~lrVLLVD----DD~~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~--------------MP 88 (603)
....++.|+ +.....+.++.+-+.. ++.|.. +.+.++|..+.+.. .|.|++-.. +|
T Consensus 266 aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~ 342 (514)
T 1jcn_A 266 AGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRP 342 (514)
T ss_dssp TTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCC
T ss_pred cCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCcc
Confidence 345566652 2334455666665555 666653 77888888777653 688877331 22
Q ss_pred CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe-CCC
Q 007462 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-KPV 138 (603)
Q Consensus 89 gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~-KP~ 138 (603)
....+.++.+++.. .++|||...+-.+...+.+++.+||+...+ .+|
T Consensus 343 ~~~~~~~~~~~~~~---~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 343 QGTAVYKVAEYARR---FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp HHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred chhHHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 22346677777643 279999988888999999999999988754 344
No 198
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=57.63 E-value=24 Score=34.08 Aligned_cols=81 Identities=11% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHhcCCCCceEEEEeCCCCCCCH----------
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-------DGLKAWEVLKGRPRNIDLILTEVDLPSISG---------- 92 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-------dg~eALe~L~~~~~~pDLVLlDl~MPgmDG---------- 92 (603)
|.++|||..-.-.+-..|...|...|++|+.+. +.....+.++... +|+||--......+.
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~~ 81 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIR--PHIIIHCAAYTKVDQAEKERDLAYV 81 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHC--CSEEEECCCCCCHHHHTTCHHHHHH
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcC--CCEEEECCcccChHHHhcCHHHHHH
Confidence 556999999999999999999888899988753 4444444554323 899986554433211
Q ss_pred ------HHHHHHHHhcccCCCCeEEEEecC
Q 007462 93 ------FALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 93 ------leLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
..+++.++.. .+.||++|+.
T Consensus 82 ~n~~~~~~l~~~~~~~----~~~~v~~SS~ 107 (287)
T 3sc6_A 82 INAIGARNVAVASQLV----GAKLVYISTD 107 (287)
T ss_dssp HHTHHHHHHHHHHHHH----TCEEEEEEEG
T ss_pred HHHHHHHHHHHHHHHc----CCeEEEEchh
Confidence 3355555443 3478888873
No 199
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=57.26 E-value=54 Score=32.84 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=62.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
|+++|.||.--..-...+..+....+++++.+ . +...+-+..+... +. .. |--+++. . ++
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~--~~-------~~~~~l~----~---~~ 63 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYG--CE--VR-------TIDAIEA----A---AD 63 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTT--CE--EC-------CHHHHHH----C---TT
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhC--CC--cC-------CHHHHhc----C---CC
Confidence 56899999987666666666555567887753 3 3444434333321 22 22 2223332 1 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+-+|+++. ....+.+..|++.|..=|+.||+ +.++...+++.+.+.
T Consensus 64 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~ 113 (331)
T 4hkt_A 64 IDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDT 113 (331)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHc
Confidence 33444433 34677788999999998999995 677777776655443
No 200
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=57.19 E-value=54 Score=32.62 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=60.7
Q ss_pred CCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLV-DDD~~~r~lL~~lL~~~Gy~V~~A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+++++ .+++..+..+..++.... .|... -...+..+++.. -|++|+.- .|. +++.+. ..
T Consensus 238 ~~~l~i~~g~~~~~~~~l~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~S-----g~~-~lEA~a-----~G 301 (384)
T 1vgv_A 238 DIQIVYPVHLNPNVREPVNRILGHVK-NVILIDPQEYLPFVWLMNH----AWLILTDS-----GGI-QEEAPS-----LG 301 (384)
T ss_dssp TEEEEEECCBCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHH----CSEEEESS-----STG-GGTGGG-----GT
T ss_pred CeEEEEEcCCCHHHHHHHHHHhhcCC-CEEEeCCCCHHHHHHHHHh----CcEEEECC-----cch-HHHHHH-----cC
Confidence 3566665 545556666766654322 34432 233566666654 58888754 222 444432 36
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|||+.-....... .+..| .++++.| +.++|...|..++.
T Consensus 302 ~PvI~~~~~~~~~e---~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 302 KPVLVMRDTTERPE---AVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp CCEEEESSCCSCHH---HHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred CCEEEccCCCCcch---hhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 89987643233222 34568 8999988 99999999988864
No 201
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=56.20 E-value=49 Score=31.26 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCCceEEE-EeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC---
Q 007462 64 GLKAWEVLKGRPRNIDLIL-TEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK--- 136 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVL-lDl~MPgm---DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K--- 136 (603)
..+.++.+.+.. .|.|+ ..+...++ -.++++++|++. .++|||+..+-...+.+.+++..||+.+++-
T Consensus 156 ~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal 230 (253)
T 1h5y_A 156 AVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLF 230 (253)
T ss_dssp HHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHH
Confidence 344444444332 67665 45443221 146788888764 3789999888888888899999999998753
Q ss_pred ---CCCHHHHHHHH
Q 007462 137 ---PVRRNELRNLW 147 (603)
Q Consensus 137 ---P~~~~eL~~~L 147 (603)
+....++...+
T Consensus 231 ~~~~~~~~~~~~~l 244 (253)
T 1h5y_A 231 HFRVLSIAQVKRYL 244 (253)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 55555555544
No 202
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=55.97 E-value=36 Score=34.29 Aligned_cols=108 Identities=23% Similarity=0.228 Sum_probs=62.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhC--CCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKS--SYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~--Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
|++||.||.--..-+..+..+.... +++++.+. +.+.|-+..+... ..-+..| --+++. .
T Consensus 1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~--~~~~~~~-------~~~ll~----~--- 64 (334)
T 3ohs_X 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD--IPKAYGS-------YEELAK----D--- 64 (334)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT--CSCEESS-------HHHHHH----C---
T ss_pred CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC--CCcccCC-------HHHHhc----C---
Confidence 5689999998776666555544332 35666543 4444444444321 1112222 222322 2
Q ss_pred CCCeEEEEe--cCCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 106 KNIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 106 ~~IPVImlS--a~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+++-+|+++ .....+.+..|+++|..=|+-||+ +.++...+++.+.+.
T Consensus 65 ~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (334)
T 3ohs_X 65 PNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSR 116 (334)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 234444443 334677888999999998999998 678888777765443
No 203
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=55.75 E-value=53 Score=28.29 Aligned_cols=43 Identities=14% Similarity=0.358 Sum_probs=35.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK 72 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~ 72 (603)
|++-|++..-|..+...+++++...||.|..+.++.+.-+.++
T Consensus 1 mnivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsie 43 (134)
T 2l69_A 1 MNIVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIE 43 (134)
T ss_dssp CCEEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH
T ss_pred CcEEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH
Confidence 4556677778888999999999999999999999988766554
No 204
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=55.73 E-value=38 Score=27.70 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=37.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHhcCCCCceEEEEeCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSS-YRVTAVPDGLKAWEVLKGRPRNIDLILTEVD 86 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~G-y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~ 86 (603)
|+++|+|+.- -.+-..+...|...| ++|+.+.-..+.++.+... ...++..|+.
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~ 58 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAK 58 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTT
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCC
Confidence 4578999999 777777777777778 8887766445555555432 2567776654
No 205
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=55.12 E-value=26 Score=37.50 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHhcCCCCceEEEEeC
Q 007462 31 ALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 31 ~lrVLLVDDD~---~~r~lL~~lL~~~Gy~V~~A~---dg----~eALe~L~~~~~~pDLVLlDl 85 (603)
..+|||||-|+ .....+..+-...|+.++.+. +. .++++.+... .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 67888888886 333333333344566665543 22 2345555433 389999998
No 206
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=55.09 E-value=83 Score=27.83 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSY--RV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
...+|.-||-++...+..+..+...++ .+ ....|..+.+..+......+|+|++|...-..+...+++.+.
T Consensus 66 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~ 139 (187)
T 2fhp_A 66 GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKML 139 (187)
T ss_dssp TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHH
Confidence 346999999999999999998877664 23 335677665554421123499999985432345566677664
No 207
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=54.76 E-value=35 Score=36.19 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=62.0
Q ss_pred hhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 26 fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
.|......|++||.|+.....++ ..|+.++... +-.+.|+.+.- ...|+||+-+.-+ ..-+.++..++..
T Consensus 22 ~L~~~g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~agi--~~A~~viv~~~~~-~~n~~i~~~ar~~-- 92 (413)
T 3l9w_A 22 LLLSSGVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDP-QTNLQLTEMVKEH-- 92 (413)
T ss_dssp HHHHTTCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTTT--TTCSEEEECCSSH-HHHHHHHHHHHHH--
T ss_pred HHHHCCCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcCC--CccCEEEECCCCh-HHHHHHHHHHHHh--
Confidence 34455688999999988765544 4577766533 33445554432 2478888865321 2234455555543
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.++++||+.+. +.........+||+..+.
T Consensus 93 ~p~~~Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 93 FPHLQIIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp CTTCEEEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred CCCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 36778887665 456666778899987664
No 208
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=54.64 E-value=21 Score=36.09 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=48.9
Q ss_pred CCEEEEEecC-----HHHHHHHHHHHHhCC-CEEEEECCHH-----HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 007462 31 ALRVLLVEAD-----DSTRQIVTALLRKSS-YRVTAVPDGL-----KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (603)
Q Consensus 31 ~lrVLLVDDD-----~~~r~lL~~lL~~~G-y~V~~A~dg~-----eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~L 99 (603)
.++||||.-. +.....|..+|++.| |+|..+.+.. +.+. ..-..+|+||++..+...+-- ....|
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~-~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEE-TNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHH-HHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHH-HHHHH
Confidence 5799999762 667789999999888 9998876531 2221 111349999998865544322 22222
Q ss_pred HhcccCCCCeEEEEec
Q 007462 100 MEHEICKNIPVIMMSS 115 (603)
Q Consensus 100 r~~~~~~~IPVImlSa 115 (603)
.+- .....++|++=+
T Consensus 80 ~~y-V~~Ggglv~~H~ 94 (281)
T 4e5v_A 80 LEY-VQNGGGVVIYHA 94 (281)
T ss_dssp HHH-HHTTCEEEEEGG
T ss_pred HHH-HHcCCCEEEEec
Confidence 211 113567777643
No 209
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=54.19 E-value=22 Score=34.90 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+++++++++. .++||++-.+-.+.+.+.+++..||+.+++-
T Consensus 189 ~~~~i~~v~~~---~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKV---TNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhh---cCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 55688888764 2789999888888999999999999999864
No 210
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=54.06 E-value=1e+02 Score=30.62 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=59.2
Q ss_pred CCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLV-DDD~~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+++++ .+.+..+..+..++.... .|.... ...+..+++.. .|++|+.- .|+ +++.+. ..
T Consensus 230 ~~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~~----ad~~v~~S-----~g~-~lEA~a-----~G 293 (376)
T 1v4v_A 230 HLTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMRA----SLLLVTDS-----GGL-QEEGAA-----LG 293 (376)
T ss_dssp TSEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----EEEEEESC-----HHH-HHHHHH-----TT
T ss_pred CeEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHHh----CcEEEECC-----cCH-HHHHHH-----cC
Confidence 3567765 656655666666654322 344432 23345555543 68888652 355 556653 36
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|||+.........+ ...| .++++. .+.++|...|.+++.
T Consensus 294 ~PvI~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 294 VPVVVLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp CCEEECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred CCEEeccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 799976443333333 3445 577874 499999999888764
No 211
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=54.04 E-value=1.7e+02 Score=28.67 Aligned_cols=100 Identities=10% Similarity=0.014 Sum_probs=62.8
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 007462 47 VTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (603)
Q Consensus 47 L~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~ 124 (603)
|+..|..-.. .+...-+..+.++.+.... +|.|++|+.-.-.+--++...++... ....++++=+...+...+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~g--aD~v~lDlEd~p~~~~~a~~~~~~~~-~~~~~~~VRv~~~~~~~i~~ 86 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLAG--FDWLVLDGEHAPNDISTFIPQLMALK-GSASAPVVRVPTNEPVIIKR 86 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTSC--CSEEEEESSSSSCCHHHHHHHHHHTT-TCSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEECCCCCHHHHHH
Confidence 5555654222 2333335556666666544 99999999765333333333343332 24577888888788888999
Q ss_pred HHHcCCcEEE-eCCCCHHHHHHHHHH
Q 007462 125 CMMRGAADYL-VKPVRRNELRNLWQH 149 (603)
Q Consensus 125 al~~GA~DyL-~KP~~~~eL~~~L~~ 149 (603)
++..|++.++ .|--+.++++.+++.
T Consensus 87 ~l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 87 LLDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HHhcCCceeeecCcCCHHHHHHHHHH
Confidence 9999998865 444578888766544
No 212
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=53.74 E-value=58 Score=31.02 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=57.7
Q ss_pred HHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEE---EEeCCCCC-----CCHHHHHHHHHhcccCCCCeEEEE
Q 007462 44 RQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLI---LTEVDLPS-----ISGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 44 r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLV---LlDl~MPg-----mDGleLLr~Lr~~~~~~~IPVIml 113 (603)
.+.++.+-+.. +..+. .+.+..++...+... .|+| +..+. |+ ...++++++++.. ++|||..
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~G---ad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~----~ipvia~ 192 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQAG---IDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA----GIAVIAE 192 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTT---CSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcC---CCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC----CCCEEEE
Confidence 34444444333 55544 467888887777643 7888 33332 22 1246888888653 6899998
Q ss_pred ecCCCHHHHHHHHHcCCcEEEeC
Q 007462 114 SSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+-.+.+.+.+++.+||+.+++-
T Consensus 193 GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 193 GKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp SCCCSHHHHHHHHTTCCSEEEEC
T ss_pred CCCCCHHHHHHHHHCCCCEEEEc
Confidence 88888999999999999998764
No 213
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=53.74 E-value=90 Score=31.81 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=56.5
Q ss_pred EEEECCHHHHHHHHhcCCCCceEEEEeCC-------------------------CC--C--------CCHHHHHHHHHhc
Q 007462 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVD-------------------------LP--S--------ISGFALLTLVMEH 102 (603)
Q Consensus 58 V~~A~dg~eALe~L~~~~~~pDLVLlDl~-------------------------MP--g--------mDGleLLr~Lr~~ 102 (603)
++.+.+..+|+..+... +|+|.+... |+ + ...++++++|+..
T Consensus 129 vv~v~~~~Ea~~a~~~G---ad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISEG---ASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHHT---CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhCC---CCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 34578888888887653 688887743 11 0 1235777777654
Q ss_pred ccCCCCeEEE--EecCCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHH
Q 007462 103 EICKNIPVIM--MSSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHV 150 (603)
Q Consensus 103 ~~~~~IPVIm--lSa~~d~~~~~~al~~GA~DyL~K-----P~~~~eL~~~L~~v 150 (603)
..+|||+ ..+-...+.+.+++.+||+.+++- --++.+....+...
T Consensus 206 ---~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~a 257 (297)
T 4adt_A 206 ---KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMA 257 (297)
T ss_dssp ---TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHH
T ss_pred ---cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHH
Confidence 2578874 455668999999999999999864 33444444333333
No 214
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=53.68 E-value=32 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=8.6
Q ss_pred HHHHHHhCCCEEEEEC
Q 007462 47 VTALLRKSSYRVTAVP 62 (603)
Q Consensus 47 L~~lL~~~Gy~V~~A~ 62 (603)
|...|...|++|..+.
T Consensus 24 La~~L~~~GheV~v~~ 39 (402)
T 3ia7_A 24 LVSELARRGHRITYVT 39 (402)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCEEEEEc
Confidence 4444555566665544
No 215
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=53.14 E-value=28 Score=35.14 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=35.7
Q ss_pred hcCCCEEEEEecC---HHHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHhcCCCCceEEEEeC
Q 007462 28 QRMALRVLLVEAD---DSTRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 28 ~~m~lrVLLVDDD---~~~r~lL~~lL~~~Gy~V~~A~---dg~----eALe~L~~~~~~pDLVLlDl 85 (603)
.....+|+++|-| +.....+..+....|+.+.... ++. ++++.++.. .+|+||+|.
T Consensus 123 ~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 123 KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 3345689999998 3445555555556677766542 333 455555433 389999997
No 216
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=52.64 E-value=32 Score=34.79 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=64.9
Q ss_pred HHhhhcCCCEEEEEecCHHHHHHHHHHHH-hCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 24 ETFLQRMALRVLLVEADDSTRQIVTALLR-KSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 24 e~fl~~m~lrVLLVDDD~~~r~lL~~lL~-~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
|++..+.++||-||.--..-+..+...|. ..+++++.+. +.+.|-+..+... +.-+..|+ +.|-
T Consensus 16 ~n~~~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-----------~ell 82 (350)
T 4had_A 16 ENLYFQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-----------EEML 82 (350)
T ss_dssp ------CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-----------HHHH
T ss_pred ccccccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-----------HHHh
Confidence 55555566999999987766655444454 4577877643 4455555444322 22344442 3332
Q ss_pred hcccCCCCeEEEEecC--CCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHH
Q 007462 101 EHEICKNIPVIMMSSQ--DSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVW 151 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~--~d~~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v~ 151 (603)
.. +++=+|+++.. ...+.+..|+++|..=|+-||+. .++...+++.+-
T Consensus 83 ~~---~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 134 (350)
T 4had_A 83 AS---DVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARD 134 (350)
T ss_dssp HC---SSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHH
T ss_pred cC---CCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHH
Confidence 22 24445555443 36788899999999999999984 566666665443
No 217
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=51.85 E-value=22 Score=35.23 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=60.1
Q ss_pred EEEEEecCHHHHHHHHHHHH---hCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeC-CCCC-CCHHHHHHHHHhccc--
Q 007462 33 RVLLVEADDSTRQIVTALLR---KSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEV-DLPS-ISGFALLTLVMEHEI-- 104 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~---~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl-~MPg-mDGleLLr~Lr~~~~-- 104 (603)
.|+|.-..-. ..++.++. ..|..+ +.+.+.+|+...++.. .|+|=+.. .+-. .-.++.+.+|...-.
T Consensus 131 ~VlL~~~~l~--~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~g---ad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~ 205 (254)
T 1vc4_A 131 AALLIVALLG--ELTGAYLEEARRLGLEALVEVHTERELEIALEAG---AEVLGINNRDLATLHINLETAPRLGRLARKR 205 (254)
T ss_dssp EEEEEHHHHG--GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHT---CSEEEEESBCTTTCCBCTTHHHHHHHHHHHT
T ss_pred EEEECccchH--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC---CCEEEEccccCcCCCCCHHHHHHHHHhCccc
Confidence 5555444322 45666654 568875 4578888887666643 57765422 1111 112344444432210
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
..++|+|..++-.+.+.+.++.. |++.+++-
T Consensus 206 ~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 206 GFGGVLVAESGYSRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp TCCSEEEEESCCCSHHHHHTTTT-TCSEEEEC
T ss_pred cCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEe
Confidence 01689999999999999999999 99999864
No 218
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=51.74 E-value=48 Score=31.19 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=47.6
Q ss_pred ECCHHHHHHHHhcCCCCceEEEEeCCCC--------CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcE
Q 007462 61 VPDGLKAWEVLKGRPRNIDLILTEVDLP--------SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (603)
Q Consensus 61 A~dg~eALe~L~~~~~~pDLVLlDl~MP--------gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~D 132 (603)
+.+..++....+. .+|.|++....| ..-|++.++++++.. +++|||+..+-. .+.+.+++..|++.
T Consensus 123 ~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~-~~nv~~~~~~Ga~g 196 (227)
T 2tps_A 123 AHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGIT-IDNAAPVIQAGADG 196 (227)
T ss_dssp ECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCC-TTTSHHHHHTTCSE
T ss_pred cCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCC-HHHHHHHHHcCCCE
Confidence 5788887665543 279998632222 123688888887542 248998877766 66777788899999
Q ss_pred EEeC
Q 007462 133 YLVK 136 (603)
Q Consensus 133 yL~K 136 (603)
+.+-
T Consensus 197 v~vg 200 (227)
T 2tps_A 197 VSMI 200 (227)
T ss_dssp EEES
T ss_pred EEEh
Confidence 8653
No 219
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=51.69 E-value=51 Score=28.60 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
...+++|+.+.+. ...+..++...+..+.. .-+..+..+++.. .|++|+-.. ...-|+-+++.+. ..+
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama-----~G~ 99 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAAN-VESEAIACLEAIS-----VGI 99 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCC-SCCCCHHHHHHHH-----TTC
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCc-ccCccHHHHHHHh-----cCC
Confidence 3578888887654 46777777777765554 2235666677753 688887543 3344678888774 254
Q ss_pred -eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 109 -PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 109 -PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
|||..+....... .+..+. ++..|-+.++|...|..++..
T Consensus 100 vPvi~~~~~~~~~~---~~~~~~--~~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 100 VPVIANSPLSATRQ---FALDER--SLFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp CEEEECCTTCGGGG---GCSSGG--GEECTTCHHHHHHHHHHHHHC
T ss_pred CcEEeeCCCCchhh---hccCCc--eEEcCCCHHHHHHHHHHHHhC
Confidence 9887332222221 112222 388899999999999988753
No 220
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=51.45 E-value=48 Score=34.00 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE----------EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR----------VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~----------V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
..+++||-+.+.....|.++++..|.. |.......+...++.. -|++++--..-+.-|.-+++.+.
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e~gg~~~lEAmA 300 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVNIGGHNLLEPTC 300 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSSSCCCCCHHHHT
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccCCCCcCHHHHHH
Confidence 468888888776556677777777654 2322223444555543 68877632111122344666652
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVYKC-MMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~~a-l~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
..+|||.-+.......+.+. ...| +++.|-+.++|...|.+++..
T Consensus 301 -----~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 301 -----WGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -----TTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred -----hCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 36799852233333333333 3445 466777999999999998864
No 221
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=51.38 E-value=32 Score=33.41 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=46.8
Q ss_pred CHHHHHHHHhcCCCCce-EEEEeCCCCCCC---HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 63 DGLKAWEVLKGRPRNID-LILTEVDLPSIS---GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MPgmD---GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+..+.+.+.. .| |.|.|....+.. -++++++|++. ..+|||+.....+...+.+++..||+..++-
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4445444444332 44 445676543221 27888888754 3799999888888888999999999998764
No 222
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=51.31 E-value=25 Score=35.39 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=67.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..+++||.+.+. ...+..++...|. .|.......+..+++.. .|++|+-.. .+.-|+-+++.+. ..+
T Consensus 241 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~EAma-----~G~ 309 (394)
T 2jjm_A 241 DAKLLLVGDGPE-FCTILQLVKNLHIEDRVLFLGKQDNVAELLAM----SDLMLLLSE-KESFGLVLLEAMA-----CGV 309 (394)
T ss_dssp CCEEEEECCCTT-HHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHT----CSEEEECCS-CCSCCHHHHHHHH-----TTC
T ss_pred CCEEEEECCchH-HHHHHHHHHHcCCCCeEEEeCchhhHHHHHHh----CCEEEeccc-cCCCchHHHHHHh-----cCC
Confidence 467788876553 4556666666553 23332233444555543 588887543 2334677888774 357
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
|||...... ..+.+..|-.++++.|-+.++|...|..++.
T Consensus 310 PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 310 PCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 888654322 1233445778999999999999999988875
No 223
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=50.52 E-value=17 Score=36.64 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecC------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 91 SGFALLTLVMEHEICKNIPVIMMSSQ------DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVImlSa~------~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
+.+++++++|+.. .++|||+|+-+ .-...+.+|.++|++++|+--+..+|....+..+
T Consensus 83 ~~~~~v~~~r~~~--~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 83 ICFELIAQIRARN--PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAA 146 (271)
T ss_dssp HHHHHHHHHHHHC--TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 4577888887542 47999999743 3356788899999999998767666655444433
No 224
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=50.29 E-value=53 Score=31.04 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=47.4
Q ss_pred CCHHHHHHHHhcCCCCce-EEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 62 PDGLKAWEVLKGRPRNID-LILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 62 ~dg~eALe~L~~~~~~pD-LVLlDl~MPgm---DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+..+.++.+.+.. .| |.|.|...... ..+++++.|++. .++|||+.....+.+.+.+++..||+.+++
T Consensus 33 ~~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 35566666665543 67 55556543221 246778888754 368999888888888999999999988774
No 225
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=49.99 E-value=2e+02 Score=31.10 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCC------------CC
Q 007462 31 ALRVLLVE----ADDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------------IS 91 (603)
Q Consensus 31 ~lrVLLVD----DD~~~r~lL~~lL~~~-Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPg------------mD 91 (603)
...+++|+ +.....+.++.+-+.. +..|+ .+.+.+.|..+++.. .|.|++... |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHT---CSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhC---CCEEEECCC-CCcCcccccccCCCcc
Confidence 45677776 4455566666666655 44443 367888888777653 799987532 21 22
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
-+.++..+.+......+|||.-.+-.+...+.+++.+||+..++-
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 345555554321113689998888889999999999999988764
No 226
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=49.91 E-value=41 Score=33.36 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=68.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHhcCCCCceEEEEeCCC------CCCCHHHHHHHHHhc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL------PSISGFALLTLVMEH 102 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~G--y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~M------PgmDGleLLr~Lr~~ 102 (603)
..+++||.+.+.. ..++.+..... +.+...-+.++..+++.. .|++|+-... +..-|+-+++.+.
T Consensus 229 ~~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-- 301 (394)
T 3okp_A 229 DAQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-- 301 (394)
T ss_dssp TCEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--
T ss_pred CeEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--
Confidence 5788888876543 34444443222 233344455788788865 5888874433 1444677888774
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
..+|||+ +.... ..+.+..| .+++..|-+.++|...|..++.
T Consensus 302 ---~G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 302 ---CGVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp ---TTCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred ---cCCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 2578886 33322 22344567 8999999999999999998864
No 227
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=49.14 E-value=61 Score=33.07 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=64.1
Q ss_pred CCEEEEEecCHHHHHHHHHHH-HhCCCEEEEEC--CHHHHHHHHhcCCCCce-EEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 31 ALRVLLVEADDSTRQIVTALL-RKSSYRVTAVP--DGLKAWEVLKGRPRNID-LILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL-~~~Gy~V~~A~--dg~eALe~L~~~~~~pD-LVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
+++|.||.--..-...+..+. ...+++++.+. +...+-+..+... +. -+..| --+++. . +
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g--~~~~~~~~-------~~~ll~----~---~ 86 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYA--IEAKDYND-------YHDLIN----D---K 86 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHT--CCCEEESS-------HHHHHH----C---T
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhC--CCCeeeCC-------HHHHhc----C---C
Confidence 579999999877777777776 44578877543 3333333333211 11 12222 222222 2 2
Q ss_pred CCeEEEEe--cCCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 107 NIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 107 ~IPVImlS--a~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
++-+|+++ .....+.+..|++.|..=|+-||+ +.++...+++.+.+.
T Consensus 87 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 87 DVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 33344333 344677888999999999999997 677777777655443
No 228
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=48.56 E-value=1.1e+02 Score=30.51 Aligned_cols=89 Identities=11% Similarity=-0.012 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 007462 43 TRQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl---~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d 118 (603)
....+....+.+|..+ +.+.+.+|+...+... .+|+|-+.. .-...| ++...+|... ...++++|.-++-..
T Consensus 138 ~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~--g~~iIGinnr~l~t~~~d-~~~~~~l~~~-ip~~~~vIaEsGI~t 213 (251)
T 1i4n_A 138 QIKEIYEAAEELGMDSLVEVHSREDLEKVFSVI--RPKIIGINTRDLDTFEIK-KNVLWELLPL-VPDDTVVVAESGIKD 213 (251)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTC--CCSEEEEECBCTTTCCBC-TTHHHHHGGG-SCTTSEEEEESCCCC
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CCCEEEEeCcccccCCCC-HHHHHHHHHh-CCCCCEEEEeCCCCC
Confidence 3444444456789975 5589999988877640 278886654 112223 4455555432 224578888888888
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 007462 119 VSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 119 ~~~~~~al~~GA~DyL~K 136 (603)
.+.+.++..+ ++.||+-
T Consensus 214 ~edv~~~~~~-a~avLVG 230 (251)
T 1i4n_A 214 PRELKDLRGK-VNAVLVG 230 (251)
T ss_dssp GGGHHHHTTT-CSEEEEC
T ss_pred HHHHHHHHHh-CCEEEEc
Confidence 9999999999 9999875
No 229
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=48.34 E-value=63 Score=30.91 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=48.0
Q ss_pred CCEEEEEe------cCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVE------ADDSTRQIVTALLRKSSYRVTAV----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVD------DD~~~r~lL~~lL~~~Gy~V~~A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
.-+|++|+ |.......+...|+..|+++... .+.++..+.|++ .|.|++ ||.+-+.+++.|+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 46899997 44456677888999999998877 477777777764 577775 7888778887776
Q ss_pred hc
Q 007462 101 EH 102 (603)
Q Consensus 101 ~~ 102 (603)
+.
T Consensus 99 ~~ 100 (206)
T 3l4e_A 99 RT 100 (206)
T ss_dssp HH
T ss_pred HC
Confidence 54
No 230
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=48.19 E-value=1.8e+02 Score=29.58 Aligned_cols=88 Identities=15% Similarity=0.015 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCEEEE--E---CCHHHHHHHHhcCCCCceEEEEeC---------------------CCCCCCHHHHHH
Q 007462 44 RQIVTALLRKSSYRVTA--V---PDGLKAWEVLKGRPRNIDLILTEV---------------------DLPSISGFALLT 97 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~--A---~dg~eALe~L~~~~~~pDLVLlDl---------------------~MPgmDGleLLr 97 (603)
.+.++.+-+..+.-|.. + .+.++|..+.+.. .|.|++.- ...+....+.+.
T Consensus 167 ~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~G---ad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~ 243 (349)
T 1p0k_A 167 LKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAG---AAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLA 243 (349)
T ss_dssp HHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHT---CSEEEEEC---------------CCGGGGTTCSCCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcC---CCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHH
Confidence 34444444444443332 2 4566665555432 67776631 122456778888
Q ss_pred HHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 98 LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 98 ~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+++.- .++|||...+-.+...+.+++.+||+.+++-
T Consensus 244 ~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 244 EIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 886532 5799999999999999999999999998765
No 231
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=47.76 E-value=42 Score=28.90 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=12.6
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEE
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRV 58 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V 58 (603)
+|||+..|......+-.++..+||.|
T Consensus 53 kiliisndkqllkemlelisklgykv 78 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKV 78 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCcee
Confidence 45555555544444444444444443
No 232
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=47.74 E-value=57 Score=31.92 Aligned_cols=86 Identities=12% Similarity=-0.041 Sum_probs=54.7
Q ss_pred CEEEEEe-cCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVE-ADDS---TRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVD-DD~~---~r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+|. |+.. ....++..|+..|..++. . .+....+..+.... ||+||+.. .+.....+++.++
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~--~dav~~~~--~~~~a~~~~~~~~ 211 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAAN--PDAILVGA--SGTAAALPQTTLR 211 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHC--CSEEEEEC--CHHHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcC--CCEEEEec--CcchHHHHHHHHH
Confidence 4666554 4443 344566677788887543 2 35566777666544 89999853 3445778888887
Q ss_pred hcccCCCCeEEEEecCCCHHHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
+.. ..+|+|.+.+..+.....
T Consensus 212 ~~g--~~~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 212 ERG--YNGLIYQTHGAASMDFIR 232 (362)
T ss_dssp HTT--CCSEEEECGGGCSHHHHH
T ss_pred HcC--CCccEEeccCcCcHHHHH
Confidence 755 467887766777665543
No 233
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=47.67 E-value=1e+02 Score=30.73 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=58.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEE-EC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++|.||.--..-...+..+....+++++. +. +.+.+-+..+... ...+..| --+++ . +++-
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~~--~~~~~~~-------~~~~l----~----~~~D 64 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ--NIQLFDQ-------LEVFF----K----SSFD 64 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGSS--SCEEESC-------HHHHH----T----SSCS
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcC--CCeEeCC-------HHHHh----C----CCCC
Confidence 58888887666555555555545677654 33 3344433333211 1122222 11222 1 2334
Q ss_pred EEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 007462 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (603)
Q Consensus 110 VImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~ 151 (603)
+|+++. ......+..|++.|..=|+.||+ +.++...+++.+.
T Consensus 65 ~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~ 110 (325)
T 2ho3_A 65 LVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAE 110 (325)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHH
Confidence 444443 34567788999999988999998 6777776666553
No 234
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=47.54 E-value=52 Score=32.49 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=18.3
Q ss_pred hcCCCEEEEEecCH----HHHHHHHHHHHhCCCEEEEEC
Q 007462 28 QRMALRVLLVEADD----STRQIVTALLRKSSYRVTAVP 62 (603)
Q Consensus 28 ~~m~lrVLLVDDD~----~~r~lL~~lL~~~Gy~V~~A~ 62 (603)
..|.+|||++-... .....|...|.+.|++|..+.
T Consensus 3 ~~m~mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~ 41 (364)
T 1f0k_A 3 SGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLG 41 (364)
T ss_dssp ----CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEe
Confidence 33447888886542 111245555666788776643
No 235
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=47.42 E-value=80 Score=30.21 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=44.6
Q ss_pred CHHHHHHHHhcCCCCceE-EEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 63 DGLKAWEVLKGRPRNIDL-ILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDL-VLlDl~MPgm---DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+..+.+.... .|. .|.|...... ..+++++.|++. .++|||+.-...+.+.+..++..||+..++-
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4444445554432 453 3445432221 235667777643 4799999888888999999999999988764
No 236
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=47.20 E-value=38 Score=31.13 Aligned_cols=70 Identities=10% Similarity=0.177 Sum_probs=41.1
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE--eCCCCCCCH---HHHHHHHHh
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT--EVDLPSISG---FALLTLVME 101 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl--Dl~MPgmDG---leLLr~Lr~ 101 (603)
|.+|+++|+++-|--.....+..++ +.+.... +|+||+ |+.-.+..- .++++.|.+
T Consensus 1 ~~~~~mri~~iSD~H~~~~~~~~~~-----------------~~~~~~~--~D~vi~~GDl~~~~~~~~~~~~~~~~l~~ 61 (228)
T 1uf3_A 1 MRRTVRYILATSNPMGDLEALEKFV-----------------KLAPDTG--ADAIALIGNLMPKAAKSRDYAAFFRILSE 61 (228)
T ss_dssp CCCCCCEEEEEECCTTCHHHHHHHH-----------------THHHHHT--CSEEEEESCSSCTTCCHHHHHHHHHHHGG
T ss_pred CccceEEEEEEeeccCCHHHHHHHH-----------------HHHhhcC--CCEEEECCCCCCCCCCHHHHHHHHHHHHh
Confidence 4567899999999765443333332 2333222 788877 765433222 246666643
Q ss_pred cccCCCCeEEEEecCCCH
Q 007462 102 HEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~ 119 (603)
..+||+++.+.-+.
T Consensus 62 ----~~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 62 ----AHLPTAYVPGPQDA 75 (228)
T ss_dssp ----GCSCEEEECCTTSC
T ss_pred ----cCCcEEEECCCCCc
Confidence 24689988886653
No 237
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=47.06 E-value=40 Score=31.47 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=42.8
Q ss_pred hccCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHhc
Q 007462 14 MNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK---SSYRVTAVPDGLKAWEVLKG 73 (603)
Q Consensus 14 ~~~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~---~Gy~V~~A~dg~eALe~L~~ 73 (603)
+++.+ +..|-+.+.-- +|+||+|+-..-...+.+|.. .|..+.. -+.++|++.+..
T Consensus 16 LIHGQ-~~~W~k~~~~~--~IiVvnD~vA~D~~~k~~lk~A~P~gvk~~i-~sve~ai~~~~~ 74 (163)
T 3p3v_A 16 LIHGQ-GQLWVKFLNCN--TVIVANDAVSEDKIQQSLMKTVIPSSIAIRF-FSIQKVIDIIHK 74 (163)
T ss_dssp GGGST-HHHHHHHTTCS--EEEEECHHHHHCHHHHHHHGGGSCTTSEEEE-ECHHHHHHHGGG
T ss_pred chhhh-hhhhhhhcCCC--EEEEEcccccCCHHHHHHHHhhCCCCceEEE-EEHHHHHHHHhc
Confidence 45788 99999997554 899999998888888888864 3666654 467778888764
No 238
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=46.82 E-value=30 Score=33.87 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=55.7
Q ss_pred HHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 50 LLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 50 lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-------leLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
.++..|..+..+- +..+.++.+... ..+|+|++=-.-|+.+| ++-+++|++.. .+++| .+.+--..
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~I-~VdGGI~~ 184 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLNI-QVDGGLNI 184 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCEE-EEESSCCH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCeE-EEECCCCH
Confidence 6677888765542 445555554431 02799988777787666 45566676543 35554 45666678
Q ss_pred HHHHHHHHcCCcEEEeC
Q 007462 120 STVYKCMMRGAADYLVK 136 (603)
Q Consensus 120 ~~~~~al~~GA~DyL~K 136 (603)
+.+..+.++||+-+++-
T Consensus 185 ~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 185 ETTEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 89999999999998765
No 239
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=46.76 E-value=1.1e+02 Score=31.14 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=53.7
Q ss_pred HhCCC-EEEEECCHHHHHHHHhcCCCCceEEEEeCCCC--CCCH----------HHHHHHHHh--cccCCCCeEEEEe-c
Q 007462 52 RKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP--SISG----------FALLTLVME--HEICKNIPVIMMS-S 115 (603)
Q Consensus 52 ~~~Gy-~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MP--gmDG----------leLLr~Lr~--~~~~~~IPVImlS-a 115 (603)
++.|+ .+.++.+.++|..+.+.. +|+|++...+- +.-| .+.++.+.+ ....+++.|+.-. +
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGp 236 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGP 236 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTT
T ss_pred HHCCCeEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 45565 577899999999888753 89999876532 3222 334444422 1223566555444 3
Q ss_pred CCCHHHHHHHHHc--CCcEEEeC
Q 007462 116 QDSVSTVYKCMMR--GAADYLVK 136 (603)
Q Consensus 116 ~~d~~~~~~al~~--GA~DyL~K 136 (603)
-...+.+..++++ |+++|+.-
T Consensus 237 IstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 237 IANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp CCSHHHHHHHHHHCTTCCEEEES
T ss_pred CCCHHHHHHHHhcCCCccEEEee
Confidence 4688999999999 99999975
No 240
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=46.73 E-value=1e+02 Score=33.07 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=69.4
Q ss_pred hccCCCccchHHhhhcC-CCEEEEEec----CHHHHHHHHHHHHh-CCCEEEEEC--CHHHHHHHHhcCCCCce-EEEEe
Q 007462 14 MNGNEGIAKWETFLQRM-ALRVLLVEA----DDSTRQIVTALLRK-SSYRVTAVP--DGLKAWEVLKGRPRNID-LILTE 84 (603)
Q Consensus 14 ~~~~~~~v~we~fl~~m-~lrVLLVDD----D~~~r~lL~~lL~~-~Gy~V~~A~--dg~eALe~L~~~~~~pD-LVLlD 84 (603)
|..+.....|-..++.| +++|.||.- -..-...+..+... .+++++.+. +.+.+-+..+... -+. .+..|
T Consensus 21 ~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g-~~~~~~~~d 99 (479)
T 2nvw_A 21 MLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ-LKHATGFDS 99 (479)
T ss_dssp CCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT-CTTCEEESC
T ss_pred HHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC-CCcceeeCC
Confidence 33444455554455545 389999998 45445556665554 578876543 3444444443322 011 22322
Q ss_pred CCCCCCCHHHHHHHHHhcccCCCCeEEEEecC--CCHHHHHHHHHcC------CcEEEeCCC--CHHHHHHHHHHHH
Q 007462 85 VDLPSISGFALLTLVMEHEICKNIPVIMMSSQ--DSVSTVYKCMMRG------AADYLVKPV--RRNELRNLWQHVW 151 (603)
Q Consensus 85 l~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~--~d~~~~~~al~~G------A~DyL~KP~--~~~eL~~~L~~v~ 151 (603)
++.|-.. +++-+|+++.. ...+.+..|+++| ..=|+-||+ +.++...+++.+.
T Consensus 100 -----------~~ell~~---~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~ 162 (479)
T 2nvw_A 100 -----------LESFAQY---KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQ 162 (479)
T ss_dssp -----------HHHHHHC---TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred -----------HHHHhcC---CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHH
Confidence 2233222 23445555443 4577788899999 778889997 4677776666543
No 241
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=46.72 E-value=1.1e+02 Score=31.83 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCC----C-CCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 007462 45 QIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVD----L-PSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~----M-PgmDGleLLr~Lr~~~~~~~IPVImlSa~~ 117 (603)
+.++.+-+..+..|+ .+.+.++|..+.+.. +|.|++.-. + .+...+++|.++++. ....+|||+-.+..
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~G---aD~I~vsn~GG~~~d~~~~~~~~L~~i~~a-v~~~ipVia~GGI~ 282 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAMKHN---VQGIVVSNHGGRQLDEVSASIDALREVVAA-VKGKIEVYMDGGVR 282 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHHHTT---CSEEEECCGGGTSSCSSCCHHHHHHHHHHH-HTTSSEEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHHcC---CCEEEEeCCCCCccCCCccHHHHHHHHHHH-hCCCCeEEEECCCC
Confidence 344444444454433 367888887777643 788887321 1 123457888888653 23479999999999
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 007462 118 SVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 118 d~~~~~~al~~GA~DyL~K 136 (603)
+...+.+++.+||+...+-
T Consensus 283 ~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 283 TGTDVLKALALGARCIFLG 301 (352)
T ss_dssp SHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 9999999999999998764
No 242
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=46.49 E-value=28 Score=32.51 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=45.3
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
++.++...++. ..|+|-+.-. ..-|++++++|+.. .+++||+...+-. .+.+.+++.+||+.+.+
T Consensus 113 t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~--~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGP--FPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTT--CTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHh--CCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 56777776653 2677765321 12378888888753 2478998877765 56788899999999865
No 243
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=46.39 E-value=46 Score=31.99 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHHHhCCCEEEE---ECCH---HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHH
Q 007462 49 ALLRKSSYRVTA---VPDG---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTV 122 (603)
Q Consensus 49 ~lL~~~Gy~V~~---A~dg---~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~ 122 (603)
...++.|..++. .-|. +.+++.++... ||+| -.||+.-- ++++++++. .++|||.=-.-.+.+.+
T Consensus 95 ~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~--PD~i---EiLPGi~p-~iI~~i~~~---~~~PiIaGGlI~~~edv 165 (192)
T 3kts_A 95 MKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQ--PDCI---ELLPGIIP-EQVQKMTQK---LHIPVIAGGLIETSEQV 165 (192)
T ss_dssp HHHHHTTCEEEEEEECCSHHHHHHHHHHHHHHC--CSEE---EEECTTCH-HHHHHHHHH---HCCCEEEESSCCSHHHH
T ss_pred HHHHHCCCeEEEEEEEEEcchHHHHHHHHhhcC--CCEE---EECCchhH-HHHHHHHHh---cCCCEEEECCcCCHHHH
Confidence 344566764432 2232 34777777655 8987 34688654 788888765 37899976677899999
Q ss_pred HHHHHcCCcEEEe
Q 007462 123 YKCMMRGAADYLV 135 (603)
Q Consensus 123 ~~al~~GA~DyL~ 135 (603)
..|+++||+..-+
T Consensus 166 ~~al~aGA~aVsT 178 (192)
T 3kts_A 166 NQVIASGAIAVTT 178 (192)
T ss_dssp HHHHTTTEEEEEE
T ss_pred HHHHHcCCeEEEe
Confidence 9999999987754
No 244
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=46.30 E-value=63 Score=31.92 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=57.2
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEE-EC--CHHHH-HHHHhcCCCCceEEEEeCCCCCCCH---------HHHHHHHH
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTA-VP--DGLKA-WEVLKGRPRNIDLILTEVDLPSISG---------FALLTLVM 100 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~--dg~eA-Le~L~~~~~~pDLVLlDl~MPgmDG---------leLLr~Lr 100 (603)
|++.|-.......+...+++.|..++. +. +..+- .+++.. . .+.|++.- +.+..| .+++++|+
T Consensus 126 ii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~-~--~g~v~~~s-~~G~tG~~~~~~~~~~~~i~~lr 201 (268)
T 1qop_A 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASY-G--RGYTYLLS-RSGVTGAENRGALPLHHLIEKLK 201 (268)
T ss_dssp EEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH-C--CSCEEEES-SSSCCCSSSCC--CCHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh-C--CCcEEEEe-cCCcCCCccCCCchHHHHHHHHH
Confidence 444443333445566667777876433 22 33333 333333 2 22344432 223322 58888887
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+.. ++||++=.+-.+.+.+.+++..||+.+++-
T Consensus 202 ~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 202 EYH---AAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred hcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 642 689887666677999999999999999875
No 245
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=46.25 E-value=2.5e+02 Score=28.48 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred CEEEEEe----cCHHHHHHHHHHHHhC-CCEEE-E-ECCHHHHHHHHhcCCCCceEEEEeCCCCCC--C-----------
Q 007462 32 LRVLLVE----ADDSTRQIVTALLRKS-SYRVT-A-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI--S----------- 91 (603)
Q Consensus 32 lrVLLVD----DD~~~r~lL~~lL~~~-Gy~V~-~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgm--D----------- 91 (603)
..++.++ +.....+.++.+-+.. +.-|+ . +.+.++|..+++.. .|.|++-- -++. +
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~-hgG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGI-GPGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECS-SCSTTCHHHHHHSCSSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEec-CCCceeecccccCcCCch
Confidence 4555554 4455666677666655 34333 3 67888888877653 68888732 2221 1
Q ss_pred -HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 92 -GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 92 -GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
-++++.+++.. .++|||.-.+-.+...+.+++.+||+..++-
T Consensus 197 ~~~~~l~~v~~~---~~ipVIa~GGI~~g~Dv~kalalGAdaV~iG 239 (336)
T 1ypf_A 197 WQLAALRWCAKA---ASKPIIADGGIRTNGDVAKSIRFGATMVMIG 239 (336)
T ss_dssp CHHHHHHHHHHT---CSSCEEEESCCCSTHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 36777777653 2799999999999999999999999988653
No 246
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=46.08 E-value=1.1e+02 Score=28.23 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=46.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC-EEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy-~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
..+|.-||-++...+..+..+...|+ .+.. ..|..+.+. .....||+||+|......+-.++++.|..
T Consensus 77 ~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 77 AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 35899999999999999999988775 3433 345554332 22235999999865333445567777755
No 247
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=45.88 E-value=67 Score=33.50 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=61.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh-CCCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
++||.||.-- .-+..+..+.+. .+++++.+ . +.+.|-+..+... +. ++.|+. .|-. . .+
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~g--v~-~~~~~~-----------~l~~-~--~D 68 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFG--IP-LYTSPE-----------QITG-M--PD 68 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTT--CC-EESSGG-----------GCCS-C--CS
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhC--CC-EECCHH-----------HHhc-C--CC
Confidence 5799999875 333334444332 26787654 3 5555655555432 32 233431 1111 1 23
Q ss_pred CeEEEEecCCC----HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 108 IPVIMMSSQDS----VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 108 IPVImlSa~~d----~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
+-+|++..... .+.+.+|+++|..=++-||++.+|...+++.+.+..
T Consensus 69 ~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g 119 (372)
T 4gmf_A 69 IACIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQG 119 (372)
T ss_dssp EEEECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcC
Confidence 33332222222 678899999999999999999999988887665443
No 248
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=45.87 E-value=1e+02 Score=31.35 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=64.2
Q ss_pred CCEEEEEecCHHHH-HHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTR-QIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r-~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
+++|.||.--..-+ ..+..+....+++++.+. +.+.+-+..+... +..+ .|+ +.+-.. ++
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~-----------~~ll~~---~~ 89 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY-----------PALLER---DD 89 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH-----------HHHHTC---TT
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH-----------HHHhcC---CC
Confidence 47999999877766 455555555578876543 4455544444321 2222 332 233221 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+-+|+++. ....+.+..|++.|..=|+-||+ +.++...+++.+.+.
T Consensus 90 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 90 VDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34444443 34677888999999998999997 567777777655433
No 249
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=45.75 E-value=68 Score=29.62 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=64.6
Q ss_pred CCCEEEEEe------cCHHHHHHHHHHHHhCCCEEEE--EC------CHH-----------HHHHHHhcCCCCceEEEEe
Q 007462 30 MALRVLLVE------ADDSTRQIVTALLRKSSYRVTA--VP------DGL-----------KAWEVLKGRPRNIDLILTE 84 (603)
Q Consensus 30 m~lrVLLVD------DD~~~r~lL~~lL~~~Gy~V~~--A~------dg~-----------eALe~L~~~~~~pDLVLlD 84 (603)
|+++|.|.. .+......+.+.|+..| .|.. +. .++ ..++.++. -|+||.+
T Consensus 1 m~mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~----aD~vvA~ 75 (152)
T 4fyk_A 1 MRRSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQ----ADVVVAE 75 (152)
T ss_dssp --CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHH----CSEEEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHH----CCEEEEe
Confidence 345666652 34355677888888888 5532 11 111 12344543 6999998
Q ss_pred CCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCC---CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 85 VDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQD---SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 85 l~MPg-mDGleLLr~Lr~~~~~~~IPVImlSa~~---d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+.-|+ .-++|+--... .+.|||++.... ....+.+....| ..|.++.+...+|...|.+.+.
T Consensus 76 l~~~d~Gt~~EiG~A~a-----lgkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 76 VTQPSLGVGYELGRAVA-----LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp CSSCCHHHHHHHHHHHH-----TTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHH-----cCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHH
Confidence 88664 23566655543 356999877633 333333333322 4578888887888888887754
No 250
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=45.53 E-value=98 Score=31.23 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=62.5
Q ss_pred CCCEEEEEecCH-HHHHHHHHHHHh-CCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 30 MALRVLLVEADD-STRQIVTALLRK-SSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 30 m~lrVLLVDDD~-~~r~lL~~lL~~-~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
.+++|.||.--. .-+..+..+... .+++++.+. +.+.+-+..+... ..-+..| ++.+-..
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~-----------~~~ll~~--- 80 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS-----------YEELLES--- 80 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC-----------HHHHHHS---
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC-----------HHHHhcC---
Confidence 468999999874 444455555444 467776543 4444444433311 1122323 2222222
Q ss_pred CCCeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 106 KNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 106 ~~IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
+++-+|+++. ....+.+..|++.|..=|+-||+ +.++...+++.+-+
T Consensus 81 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 81 GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2344444443 34668888999999999999997 77888777765543
No 251
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=45.34 E-value=85 Score=29.78 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCEEEEEC---CH---HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 44 RQIVTALLRKSSYRVTAVP---DG---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~---dg---~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
...+...+++.||.+..+. +. .+.++.+.... +|-||+--..+ .++++.+.+ ..+|||++...
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~----~~~~~~l~~----~~iPvV~i~~~ 94 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN----PQTVQEILH----QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC----HHHHHHHHT----TSSCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc----HHHHHHHHH----CCCCEEEEecc
Confidence 3445555677899877653 22 23456665544 89888754333 567777754 47899988654
No 252
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=45.27 E-value=14 Score=36.75 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=49.7
Q ss_pred HHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcc--cCCCCeEEEEe
Q 007462 47 VTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHE--ICKNIPVIMMS 114 (603)
Q Consensus 47 L~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-------leLLr~Lr~~~--~~~~IPVImlS 114 (603)
+...+++.|..+..+- +..+.++.+.. .+|+|++=-.-|+..| ++-+++|++.. ...+++|. +.
T Consensus 126 ~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~---~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~-VD 201 (246)
T 3inp_A 126 SLQLIKSFGIQAGLALNPATGIDCLKYVES---NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLE-ID 201 (246)
T ss_dssp HHHHHHTTTSEEEEEECTTCCSGGGTTTGG---GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEE-EE
T ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHh---cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEE-EE
Confidence 3334467787655432 33344433322 3788887566677766 34555555421 12345544 55
Q ss_pred cCCCHHHHHHHHHcCCcEEEeC
Q 007462 115 SQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~K 136 (603)
+--..+.+..+.++||+-+++-
T Consensus 202 GGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 202 GGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp SSCCTTTHHHHHTTTCCEEEES
T ss_pred CCcCHHHHHHHHHcCCCEEEEe
Confidence 5555778889999999998864
No 253
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=44.87 E-value=27 Score=34.29 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHH---HHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 92 GFALLTLVMEHEICKNIPVIMMSSQDSVS---TVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVImlSa~~d~~---~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
+++++++|++. .++||++|.-. +.. .+..|.+.||+++++-....+++...+..+
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 56778888754 47899988522 211 122488999999998665555665555544
No 254
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=44.21 E-value=1.2e+02 Score=31.52 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCC----CC-CCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 44 RQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD----LP-SISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~----MP-gmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
.+.+..+-+..+..|.. +.+.++|..+++.. .|.|.+.-. +. +..-++++.+++.. ...++|||.-.+.
T Consensus 214 ~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~G---ad~I~vs~~ggr~~~~~~~~~~~l~~v~~~-~~~~ipvia~GGI 289 (370)
T 1gox_A 214 WKDVAWLQTITSLPILVKGVITAEDARLAVQHG---AAGIIVSNHGARQLDYVPATIMALEEVVKA-AQGRIPVFLDGGV 289 (370)
T ss_dssp HHHHHHHHHHCCSCEEEECCCSHHHHHHHHHTT---CSEEEECCGGGTSSTTCCCHHHHHHHHHHH-TTTSSCEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEecCCHHHHHHHHHcC---CCEEEECCCCCccCCCcccHHHHHHHHHHH-hCCCCEEEEECCC
Confidence 34455555555665543 56788887776642 788887421 11 12456778887653 2237999999999
Q ss_pred CCHHHHHHHHHcCCcEEEeC
Q 007462 117 DSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~K 136 (603)
.+...+.+++.+||+..++-
T Consensus 290 ~~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 290 RRGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp CSHHHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEeec
Confidence 99999999999999998764
No 255
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=44.15 E-value=1.4e+02 Score=26.72 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=52.2
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCC--CCHHHHHHHHHhccc
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSY-RVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEI 104 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy-~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPg--mDGleLLr~Lr~~~~ 104 (603)
+...+|.-||-++......+..+...+. .+. ...|..+.+..+.. ..+|+|++|.-... .+-..+++.+.....
T Consensus 65 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~ 142 (189)
T 3p9n_A 65 RGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPPYNVDSADVDAILAALGTNGW 142 (189)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCCTTSCHHHHHHHHHHHHHSSS
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCCCCcchhhHHHHHHHHHhcCc
Confidence 3345899999999999999999887665 333 35566665543323 34999999854333 234466666654222
Q ss_pred -CCCCeEEEEe
Q 007462 105 -CKNIPVIMMS 114 (603)
Q Consensus 105 -~~~IPVImlS 114 (603)
.++-.+|+-+
T Consensus 143 L~pgG~l~~~~ 153 (189)
T 3p9n_A 143 TREGTVAVVER 153 (189)
T ss_dssp CCTTCEEEEEE
T ss_pred cCCCeEEEEEe
Confidence 2344444433
No 256
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=44.03 E-value=1.4e+02 Score=28.24 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
...+...+++.||.+..+. +.. +.++.+.... +|.||+--..+. .-.+.++.+.+ ..+|||++...
T Consensus 21 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 92 (290)
T 2fn9_A 21 AETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAG--YDAIIFNPTDAD-GSIANVKRAKE----AGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCSCTT-TTHHHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEecCChH-HHHHHHHHHHH----CCCeEEEEecC
Confidence 4445566778899876643 333 3455554443 898887432221 11345666643 36899988653
No 257
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=43.56 E-value=1.3e+02 Score=32.48 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 44 RQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl---~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
...|....+.+|..+ +.+.+.+|+...+... +|+|=+.. .-...| ++...+|... ...+++||.-++-...
T Consensus 146 l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lg---a~iIGinnr~L~t~~~d-l~~~~~L~~~-ip~~~~vIaEsGI~t~ 220 (452)
T 1pii_A 146 YRQLAAVAHSLEMGVLTEVSNEEEQERAIALG---AKVVGINNRDLRDLSID-LNRTRELAPK-LGHNVTVISESGINTY 220 (452)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT---CSEEEEESEETTTTEEC-THHHHHHHHH-HCTTSEEEEESCCCCH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCC---CCEEEEeCCCCCCCCCC-HHHHHHHHHh-CCCCCeEEEECCCCCH
Confidence 344444456789975 4589999998888753 78887743 222233 4555555432 1246788888999999
Q ss_pred HHHHHHHHcCCcEEEeC
Q 007462 120 STVYKCMMRGAADYLVK 136 (603)
Q Consensus 120 ~~~~~al~~GA~DyL~K 136 (603)
+.+.++..+ ++.||+-
T Consensus 221 edv~~~~~~-a~avLVG 236 (452)
T 1pii_A 221 AQVRELSHF-ANGFLIG 236 (452)
T ss_dssp HHHHHHTTT-CSEEEEC
T ss_pred HHHHHHHHh-CCEEEEc
Confidence 999999999 9999865
No 258
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=43.40 E-value=11 Score=35.40 Aligned_cols=48 Identities=8% Similarity=0.091 Sum_probs=32.4
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl 83 (603)
|||||........+..+|+..|+++..+......++.+... .+|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 99999877767788899999999877665432123333321 2787777
No 259
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=43.38 E-value=53 Score=35.75 Aligned_cols=66 Identities=8% Similarity=0.072 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+.|..+++. . +|+|.+|...+... -++++++|++.. +++|||+ ......+.+..+.++||+.+.+
T Consensus 233 ~~~a~~l~~a-G--~d~I~id~a~g~~~~~~~~i~~ir~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVEA-G--VDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHHT-T--CSEEEEECSCTTSHHHHHHHHHHHHHC--TTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhc-c--CceEEeccccccchHHHHHHHHHHHHC--CCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 3444455543 3 89999999887654 468888887643 5788876 3345678888999999998876
No 260
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=43.30 E-value=75 Score=33.23 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCE--EEE--ECCHHHHHHHHhcCCCCc----eEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 44 RQIVTALLRKSSYR--VTA--VPDGLKAWEVLKGRPRNI----DLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 44 r~lL~~lL~~~Gy~--V~~--A~dg~eALe~L~~~~~~p----DLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
...|..++...|.. |.. .-+..+..+++.. . |++|+=... +.-|+-+++.+. ..+|||...
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~~-Eg~~~~~lEAma-----~G~PvI~s~- 389 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSFY-EPFGLAPVEAMA-----SGLPAVVTR- 389 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCSC-BCCCSHHHHHHH-----TTCCEEEES-
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECccc-CCCCcHHHHHHH-----cCCCEEEec-
Confidence 67788888876642 443 3355777777764 5 888874332 333667788774 367888643
Q ss_pred CCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 116 QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
. ....+.+..|..++++.|-+.++|...|..++.
T Consensus 390 ~---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 390 N---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp S---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred C---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 2 234456677888999999999999999988864
No 261
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=43.29 E-value=58 Score=30.53 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHhCCCEEEE-E--CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHH-------HHHHHHHhcc--cCCCCeEEEEec
Q 007462 48 TALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGF-------ALLTLVMEHE--ICKNIPVIMMSS 115 (603)
Q Consensus 48 ~~lL~~~Gy~V~~-A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGl-------eLLr~Lr~~~--~~~~IPVImlSa 115 (603)
.+.++..|..+.. + .+..++++.+.. ..|.|+++-..|+.+|. +.++.+++.. ...++||++.-+
T Consensus 102 ~~~~~~~g~~i~~~~~~~t~~e~~~~~~~---~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG 178 (220)
T 2fli_A 102 LQKIKAAGMKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGG 178 (220)
T ss_dssp HHHHHHTTSEEEEEECTTSCGGGGGGGTT---TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred HHHHHHcCCcEEEEEcCCCCHHHHHHHHh---hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECc
Confidence 3444445665443 3 334445444332 37899888777766553 3355554321 112577765544
Q ss_pred CCCHHHHHHHHHcCCcEEEeC
Q 007462 116 QDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (603)
-. .+.+.+++++||+.+++-
T Consensus 179 I~-~~~~~~~~~~Gad~vvvG 198 (220)
T 2fli_A 179 VD-NKTIRACYEAGANVFVAG 198 (220)
T ss_dssp CC-TTTHHHHHHHTCCEEEES
T ss_pred CC-HHHHHHHHHcCCCEEEEC
Confidence 44 666777888899998653
No 262
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=42.75 E-value=90 Score=31.82 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=59.0
Q ss_pred EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCH-------------HHHHH
Q 007462 59 TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSV-------------STVYK 124 (603)
Q Consensus 59 ~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~-------------~~~~~ 124 (603)
+++.+.+.|+...+.....+.|. .++..++.. ++.+++.+++. .++||.+|.-.-.- ..+..
T Consensus 44 vc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~---~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~ 119 (287)
T 3iwp_A 44 VCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQS---VQIPVFVMIRPRGGDFLYSDREIEVMKADIRL 119 (287)
T ss_dssp EEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTT---CCSCEEEECCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHh---cCCCeEEEEecCCCCcccCHHHHHHHHHHHHH
Confidence 34788899988887654333333 234445543 78899998764 36999888654332 46777
Q ss_pred HHHcCCcEEEeCC------CCHHHHHHHHHHH
Q 007462 125 CMMRGAADYLVKP------VRRNELRNLWQHV 150 (603)
Q Consensus 125 al~~GA~DyL~KP------~~~~eL~~~L~~v 150 (603)
+.++||++++.-- ++.+.++.++...
T Consensus 120 ~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a 151 (287)
T 3iwp_A 120 AKLYGADGLVFGALTEDGHIDKELCMSLMAIC 151 (287)
T ss_dssp HHHTTCSEEEECCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHc
Confidence 8899999998763 5566677666643
No 263
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=42.45 E-value=62 Score=31.17 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=46.2
Q ss_pred CHHHHHHHHhcCCCCce-EEEEeCCCC---CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 63 DGLKAWEVLKGRPRNID-LILTEVDLP---SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MP---gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+..+.+.+.. +| |.|.|+.-. ...-++++++|++. ..+|||+--+..+.+.+.+++..||+..++-
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 3444445454433 45 445566322 12236888988764 3799999888889999999999998887643
No 264
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=42.25 E-value=43 Score=34.22 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcccCCCCeEEEE--ecCCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHHh
Q 007462 92 GFALLTLVMEHEICKNIPVIMM--SSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHVWRR 153 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVIml--Sa~~d~~~~~~al~~GA~DyL~K-----P~~~~eL~~~L~~v~rr 153 (603)
.++++++|++. ..+|||++ .+-.+.+.+.+++..|+++.++- --++......+..++..
T Consensus 186 d~elI~~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 47888888765 47999987 34458999999999999999765 33466666555555543
No 265
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=41.89 E-value=1.1e+02 Score=30.68 Aligned_cols=112 Identities=12% Similarity=0.109 Sum_probs=60.7
Q ss_pred HhhhcCC-CEEEEEecCHHHHHHHHHH------HHh-CCCEEEEECCH--HHHHHHHhcCCCCceEEEEeCCCCCCCHHH
Q 007462 25 TFLQRMA-LRVLLVEADDSTRQIVTAL------LRK-SSYRVTAVPDG--LKAWEVLKGRPRNIDLILTEVDLPSISGFA 94 (603)
Q Consensus 25 ~fl~~m~-lrVLLVDDD~~~r~lL~~l------L~~-~Gy~V~~A~dg--~eALe~L~~~~~~pDLVLlDl~MPgmDGle 94 (603)
.+++.|+ +||-||.-=..-+..+..+ +.. .+++++.+.|. +.|-+..+... ..-+..|+
T Consensus 18 ~~~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~--------- 86 (393)
T 4fb5_A 18 LYFQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFG--FEKATADW--------- 86 (393)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHT--CSEEESCH---------
T ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhC--CCeecCCH---------
Confidence 3677774 8999999765444333332 221 35677765432 23333333322 23344442
Q ss_pred HHHHHHhcccCCCCeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 95 LLTLVMEHEICKNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 95 LLr~Lr~~~~~~~IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
+.|-+. +++=+|+++. ....+.+..|+++|..=|+-||+ +.++...+++.+-+
T Consensus 87 --~ell~~---~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 143 (393)
T 4fb5_A 87 --RALIAD---PEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAER 143 (393)
T ss_dssp --HHHHHC---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred --HHHhcC---CCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHh
Confidence 333222 2344444443 34688899999999999999997 46777777665543
No 266
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=41.79 E-value=2.2e+02 Score=30.34 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=63.9
Q ss_pred CEEEEEec----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCC-----------CCCHH
Q 007462 32 LRVLLVEA----DDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP-----------SISGF 93 (603)
Q Consensus 32 lrVLLVDD----D~~~r~lL~~lL~~~-Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MP-----------gmDGl 93 (603)
..+++++- .....+.++.+-+.. ++.|+ .+.+.++|..+.+. . +|.|.+...-. +...+
T Consensus 250 vd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~-G--~d~I~v~~~~G~~~~~~~~~~~g~p~~ 326 (494)
T 1vrd_A 250 VDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA-G--ADAVKVGVGPGSICTTRVVAGVGVPQL 326 (494)
T ss_dssp CSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT-T--CSEEEECSSCSTTCHHHHHHCCCCCHH
T ss_pred CCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc-C--CCEEEEcCCCCccccccccCCCCccHH
Confidence 45565532 233555566555555 45443 36788888666653 2 78888743210 12345
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 94 eLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+++..+.......++|||.-.+-.+...+.+++.+||+...+-
T Consensus 327 ~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iG 369 (494)
T 1vrd_A 327 TAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369 (494)
T ss_dssp HHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 5555554332223799999889999999999999999887653
No 267
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=41.69 E-value=15 Score=37.24 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=60.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
|+|.||-........+..+|+..|++|.......+.+ . .+|+||+= |.||. +|+..+... .. +|||
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~---~----~~DlvIvl----GGDGT-~L~aa~~~~-~~-~Pil 95 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL---E----NFDFIVSV----GGDGT-ILRILQKLK-RC-PPIF 95 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG---G----GSSEEEEE----ECHHH-HHHHHTTCS-SC-CCEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc---C----CCCEEEEE----CCCHH-HHHHHHHhC-CC-CcEE
Confidence 5788885432226778888999999987765433222 1 27888762 66773 555554322 12 8999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
-+.. |-.+||. ++.++++...|..++.
T Consensus 96 GIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 96 GINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred EECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 7763 5666776 4777777777777765
No 268
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=41.57 E-value=61 Score=32.62 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++|.||.--..-...+..+....+++++.+. +.+.+-+..+... ..-+. .|--+++. .. ..++
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~-------~~~~~ll~----~~-~~D~ 70 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA--IPVAY-------GSYEELCK----DE-TIDI 70 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT--CCCCB-------SSHHHHHH----CT-TCSE
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC--CCcee-------CCHHHHhc----CC-CCCE
Confidence 47999998876666666666555678877653 3444444444321 11111 12223332 11 1233
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
-+|........+.+..|++.|..=|+.||+ +.++...+++.+.+
T Consensus 71 V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 71 IYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333333344677788999999999999996 56777776665543
No 269
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=41.50 E-value=1.4e+02 Score=28.98 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=25.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEE
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV 61 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A 61 (603)
|+++|||..-.-.+-..|...|...|++|+.+
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 32 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIIL 32 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 55789999988888888888888788887764
No 270
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=41.48 E-value=1.9e+02 Score=26.69 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=40.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
+|+|-+.+..| ++.+.++.+++.. ..+. +|.+....+.+.+..+.+.||+.+ +-|....++....+
T Consensus 36 ~~~iev~~~~~--~~~~~i~~ir~~~-~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~~~~~ 101 (205)
T 1wa3_A 36 VHLIEITFTVP--DADTVIKELSFLK-EKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEISQFCK 101 (205)
T ss_dssp CCEEEEETTST--THHHHHHHTHHHH-HTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHHHHHHH
T ss_pred CCEEEEeCCCh--hHHHHHHHHHHHC-CCCc-EEEecccCCHHHHHHHHHcCCCEE-EcCCCCHHHHHHHH
Confidence 56665555544 5677788887642 1133 333434456778899999999766 66766555555444
No 271
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=41.29 E-value=1.2e+02 Score=31.55 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeC----CCC-CCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 43 TRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEV----DLP-SISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl----~MP-gmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
..+.|+.+-+..+..|+ .+.+.++|..+.+.. .|.|.+.- .+. +..-++++.++++.- ...+|||+-.+
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~G---ad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v-~~~ipVia~GG 292 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRG---ASGIWVSNHGARQLYEAPGSFDTLPAIAERV-NKRVPIVFDSG 292 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHTT---CSEEEECCGGGTSCSSCCCHHHHHHHHHHHH-TTSSCEEECSS
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHcC---CCEEEEcCCCcCCCCCCCChHHHHHHHHHHh-CCCCeEEEECC
Confidence 34445555554554443 367888887776542 78888742 111 234578888886532 23699999999
Q ss_pred CCCHHHHHHHHHcCCcEEEeC
Q 007462 116 QDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (603)
-.+...+.+++.+||+..++-
T Consensus 293 I~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 293 VRRGEHVAKALASGADVVALG 313 (368)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 999999999999999998765
No 272
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=41.20 E-value=1.4e+02 Score=31.30 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=45.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCC---C------EE-EEECCHHHHHHHHhcCCCCceEEEEeCCC-CC------CCHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSS---Y------RV-TAVPDGLKAWEVLKGRPRNIDLILTEVDL-PS------ISGF 93 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~G---y------~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~M-Pg------mDGl 93 (603)
..+|.+||=|+...+..+..|...+ + .+ +...|+.+.++.+......||+||+|.-- |. .-..
T Consensus 211 ~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~ 290 (364)
T 2qfm_A 211 PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTW 290 (364)
T ss_dssp CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHH
Confidence 3689999999999999999875321 1 12 33578888777552112349999999865 42 2345
Q ss_pred HHHHHH
Q 007462 94 ALLTLV 99 (603)
Q Consensus 94 eLLr~L 99 (603)
++++.+
T Consensus 291 eFy~~~ 296 (364)
T 2qfm_A 291 EFLRLI 296 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 273
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=41.00 E-value=16 Score=34.31 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=49.3
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEE--EecCCCHHHHHHHHHcCCcEEEeCCC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIM--MSSQDSVSTVYKCMMRGAADYLVKPV 138 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPg--mDGleLLr~Lr~~~~~~~IPVIm--lSa~~d~~~~~~al~~GA~DyL~KP~ 138 (603)
+.+++++.++.....+| ++++.+|- .+|.++++.|++. +++.||++ +........+..+.++||+.+.+-+.
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~--~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKA--HPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHH--STTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHh--CCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEecc
Confidence 55666666654321123 35665552 3577888888764 24678874 44321234478899999998876665
Q ss_pred CH-HHHHHHHHHH
Q 007462 139 RR-NELRNLWQHV 150 (603)
Q Consensus 139 ~~-~eL~~~L~~v 150 (603)
.. ..+..+++.+
T Consensus 87 ~~~~~~~~~~~~~ 99 (207)
T 3ajx_A 87 ADDSTIAGAVKAA 99 (207)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 44 4454444433
No 274
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=40.74 E-value=1.3e+02 Score=29.60 Aligned_cols=85 Identities=12% Similarity=-0.020 Sum_probs=54.1
Q ss_pred CEEEEE-e-cCHHH---HHHHHHHHHhCCCEEEEE------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLV-E-ADDST---RQIVTALLRKSSYRVTAV------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLV-D-DD~~~---r~lL~~lL~~~Gy~V~~A------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.|| + ++... ...+...|+..|..++.. .+....+..+.... +|+||+.. .+.+...+++.++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~ 225 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFN--PDAIYITG--YYPEIALISRQAR 225 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTC--CSEEEECS--CHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcC--CCEEEEcc--chhHHHHHHHHHH
Confidence 478777 3 44433 345666777888876532 36667777776654 99999843 2345677888887
Q ss_pred hcccCCCCeEEEEecCCCHHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVSTV 122 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~ 122 (603)
+.. ..+|||...........
T Consensus 226 ~~g--~~~~~~~~~~~~~~~~~ 245 (366)
T 3td9_A 226 QLG--FTGYILAGDGADAPELI 245 (366)
T ss_dssp HTT--CCSEEEECGGGCSTHHH
T ss_pred HcC--CCceEEeeCCcCCHHHH
Confidence 654 35787765555444433
No 275
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=40.46 E-value=43 Score=32.42 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=50.6
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCC----CCCC-CHHHHHHHHHhcccCCCCeEE--EEecCCCHHHHHHHHHcCCcEEEe
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVD----LPSI-SGFALLTLVMEHEICKNIPVI--MMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~----MPgm-DGleLLr~Lr~~~~~~~IPVI--mlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+..++++.+.+.. .|+|=+|+. .|.+ -|+++++.|++.. ++|+. +|+. +....+..+.++||+.+.+
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~---~~~~~vhlmv~-dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLT---KKTLDVHLMIV-EPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC---CSEEEEEEESS-SGGGTHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhc---CCcEEEEEEcc-CHHHHHHHHHHcCCCEEEE
Confidence 4455666665433 566666652 1332 3779999997642 45666 7774 3344677889999999866
Q ss_pred CCC--CHHHHHHHHHHHH
Q 007462 136 KPV--RRNELRNLWQHVW 151 (603)
Q Consensus 136 KP~--~~~eL~~~L~~v~ 151 (603)
-.. ..+++...++.+.
T Consensus 92 h~e~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 92 HVEHNASPHLHRTLCQIR 109 (230)
T ss_dssp ECSTTTCTTHHHHHHHHH
T ss_pred CcccccchhHHHHHHHHH
Confidence 554 3345555555543
No 276
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=39.65 E-value=73 Score=31.39 Aligned_cols=103 Identities=8% Similarity=0.059 Sum_probs=59.7
Q ss_pred CCEE-EEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRV-LLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrV-LLVDDD~~~r~lL~~lL~~~Gy-~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
..++ +|+.+.+ ...+..++...|. .|.......+..+++.. .|++|+-- + |.-+++.+.. .+
T Consensus 212 ~~~~l~i~G~~~--~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s---g--~~~~~EAma~-----G~ 275 (364)
T 1f0k_A 212 SVTIWHQSGKGS--QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAW----ADVVVCRS---G--ALTVSEIAAA-----GL 275 (364)
T ss_dssp GEEEEEECCTTC--HHHHHHHHHHTTCTTSEEESCCSCHHHHHHH----CSEEEECC---C--HHHHHHHHHH-----TC
T ss_pred CcEEEEEcCCch--HHHHHHHHhhcCCCceEEecchhhHHHHHHh----CCEEEECC---c--hHHHHHHHHh-----CC
Confidence 3564 4455555 2556666665542 23333222344455543 57888742 2 8888888753 57
Q ss_pred eEEEEecCC--C-H-HHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHH
Q 007462 109 PVIMMSSQD--S-V-STVYKCMMRGAADYLVKPVR--RNELRNLWQHV 150 (603)
Q Consensus 109 PVImlSa~~--d-~-~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v 150 (603)
|||+..... + . .........|. ++++.|-+ .++|...|..+
T Consensus 276 Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 276 PALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 988764321 1 1 11334456777 99999855 89998887654
No 277
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=39.32 E-value=34 Score=31.76 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=34.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHhcCCCCceEEEE
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG---LKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg---~eALe~L~~~~~~pDLVLl 83 (603)
++|||||.-...-..+...|+..|+++..+... ++..+.+.... .+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~-~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMK-NPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCS-SEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhcc-CCeEEEC
Confidence 479999977777788889999999987766543 44444443211 2456665
No 278
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=39.21 E-value=94 Score=32.00 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=60.6
Q ss_pred CCCEEEEEecC-HHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 30 MALRVLLVEAD-DSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 30 m~lrVLLVDDD-~~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
|+++|.||.-- ..-...+..+....+++++.+. +...+-+..+... +. +.. |--+++.. +
T Consensus 1 ~~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~-~~~-------~~~ell~~-------~ 63 (387)
T 3moi_A 1 MKIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYG--IP-VFA-------TLAEMMQH-------V 63 (387)
T ss_dssp CCEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHT--CC-EES-------SHHHHHHH-------S
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcC--CC-eEC-------CHHHHHcC-------C
Confidence 45788888887 4434445555555577776643 3333433333211 21 121 22233331 2
Q ss_pred CCeEEEEec--CCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHHh
Q 007462 107 NIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWRR 153 (603)
Q Consensus 107 ~IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v~rr 153 (603)
++-+|+++. ....+.+..|+++|..=|+.||+. .++...++..+-+.
T Consensus 64 ~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 114 (387)
T 3moi_A 64 QMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERA 114 (387)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHh
Confidence 333444433 346678889999999999999964 67777766655433
No 279
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=39.17 E-value=1.4e+02 Score=32.79 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCCceE-EEEeCCCCCC-C--HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH-cCCcEEEeC---
Q 007462 65 LKAWEVLKGRPRNIDL-ILTEVDLPSI-S--GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLVK--- 136 (603)
Q Consensus 65 ~eALe~L~~~~~~pDL-VLlDl~MPgm-D--GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~-~GA~DyL~K--- 136 (603)
.+..+.+++.. .+. +++|+.-.++ . -++++++|.+. ..+|||.--+..+.+.+.++++ .|+++.++-
T Consensus 455 ~e~a~~~~~~G--a~~il~t~~~~dG~~~G~d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~ 529 (555)
T 1jvn_A 455 WELTRACEALG--AGEILLNCIDKDGSNSGYDLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 529 (555)
T ss_dssp HHHHHHHHHTT--CCEEEECCGGGTTTCSCCCHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCCCCCCCCHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence 34444444433 554 4456533222 2 27899999764 3799998878889999999998 899998765
Q ss_pred ---CCCHHHHHHHHH
Q 007462 137 ---PVRRNELRNLWQ 148 (603)
Q Consensus 137 ---P~~~~eL~~~L~ 148 (603)
|+...+++..+.
T Consensus 530 ~~~~~~~~e~~~~l~ 544 (555)
T 1jvn_A 530 HRGEFTVNDVKEYLL 544 (555)
T ss_dssp HTTSCCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 888888876543
No 280
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=38.85 E-value=85 Score=32.92 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 66 KAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+.++.+.+.. +|+|.+|....... -+++++.|++.. +++|||+ -...+.+.+..+.++||+.+.+
T Consensus 103 e~~~~a~~aG--vdvI~id~a~G~~~~~~e~I~~ir~~~--~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 103 QRAEALRDAG--ADFFCVDVAHAHAKYVGKTLKSLRQLL--GSRCIMA-GNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHTT--CCEEEEECSCCSSHHHHHHHHHHHHHH--TTCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcC--CCEEEEeCCCCCcHhHHHHHHHHHHhc--CCCeEEE-cCcCCHHHHHHHHHcCCCEEEE
Confidence 3444444433 89999997654332 257888887642 5778876 1234678889999999998886
No 281
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=38.69 E-value=1.7e+02 Score=29.09 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=48.2
Q ss_pred HHHHHHhcCCCCceEEEEeCC------CC----CCCHHHHHHHHHhcccCCCCeEEEEecCCC-H-----HHHHHHHHcC
Q 007462 66 KAWEVLKGRPRNIDLILTEVD------LP----SISGFALLTLVMEHEICKNIPVIMMSSQDS-V-----STVYKCMMRG 129 (603)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~------MP----gmDGleLLr~Lr~~~~~~~IPVImlSa~~d-~-----~~~~~al~~G 129 (603)
.|++.+.... ..+++|+.-. -| ++..+..+++. .++|||+.+++.. . .....|..+|
T Consensus 148 ~Av~~i~~~G-n~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~------~~~pVi~d~sH~~g~~~~v~~~~~aAva~G 220 (262)
T 1zco_A 148 YSAEYIMAQG-NENVILCERGIRTFETATRFTLDISAVPVVKEL------SHLPIIVDPSHPAGRRSLVIPLAKAAYAIG 220 (262)
T ss_dssp HHHHHHHTTT-CCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHH------BSSCEEECSSTTTCSGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHCC-CCeEEEEECCCCCCCCcChhhcCHHHHHHHHhh------hCCCEEEEcCCCCCccchHHHHHHHHHHcC
Confidence 3455555543 4789998721 12 33455555443 2679989988862 2 5566788999
Q ss_pred CcEEE-eCC-------------CCHHHHHHHHHHH
Q 007462 130 AADYL-VKP-------------VRRNELRNLWQHV 150 (603)
Q Consensus 130 A~DyL-~KP-------------~~~~eL~~~L~~v 150 (603)
|++++ -|- +.+++|..+++.+
T Consensus 221 a~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i 255 (262)
T 1zco_A 221 ADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKEL 255 (262)
T ss_dssp CSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHH
T ss_pred CCEEEEEecCCccccCChhhcCCCHHHHHHHHHHH
Confidence 99875 454 4566666666654
No 282
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=38.49 E-value=1.9e+02 Score=29.23 Aligned_cols=92 Identities=20% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEEecCHHH----HHHHHHHHHhCCCE---EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 34 VLLVEADDST----RQIVTALLRKSSYR---VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 34 VLLVDDD~~~----r~lL~~lL~~~Gy~---V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
+||.||+-.. ...++..-+..+.. .+.+.+.+++.+.++.. .|+|.+| .+.--.+-+.++... .
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aG---aD~I~ld----~~~~~~~k~av~~v~--~ 239 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAG---ADLILLD----NFPLEALREAVRRVG--G 239 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHT---CSEEEEE----SCCHHHHHHHHHHHT--T
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC---CCEEEEC----CCCHHHHHHHHHHhC--C
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
++|++. ++--..+.+......|++.+-+
T Consensus 240 ~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 240 RVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp SSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCeEEE-EcCCCHHHHHHHHHcCCCEEEE
No 283
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=38.21 E-value=51 Score=31.88 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=53.1
Q ss_pred HHHHHHhCCCEEEE-E--CCHHHHHHHHhcCCCCceEEEEeCCCCCCC-------HHHHHHHHHhcc--cCCCCeEEEEe
Q 007462 47 VTALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSIS-------GFALLTLVMEHE--ICKNIPVIMMS 114 (603)
Q Consensus 47 L~~lL~~~Gy~V~~-A--~dg~eALe~L~~~~~~pDLVLlDl~MPgmD-------GleLLr~Lr~~~--~~~~IPVImlS 114 (603)
+.+.++..|..+.. + .+..++++.+.. ..|.|++--..|+.. +++.+++|++.. ...++||.+.-
T Consensus 104 ~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~---~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G 180 (230)
T 1tqj_A 104 TLCQIRELGKKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG 180 (230)
T ss_dssp HHHHHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHcCCcEEEEEeCCCcHHHHHHHHh---cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 33444556776544 3 355666655543 268888777777633 467777776532 11267887766
Q ss_pred cCCCHHHHHHHHHcCCcEEEeC
Q 007462 115 SQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~K 136 (603)
+-.. +.+..+.++||+.+++-
T Consensus 181 GI~~-~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 181 GLKP-NNTWQVLEAGANAIVAG 201 (230)
T ss_dssp SCCT-TTTHHHHHHTCCEEEES
T ss_pred CcCH-HHHHHHHHcCCCEEEEC
Confidence 6554 77778889999999864
No 284
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=37.60 E-value=3.2e+02 Score=27.34 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=68.8
Q ss_pred CCEEEEEecC----HHHHHHHHHHHHhCCC--EEEEEC-----CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 007462 31 ALRVLLVEAD----DSTRQIVTALLRKSSY--RVTAVP-----DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (603)
Q Consensus 31 ~lrVLLVDDD----~~~r~lL~~lL~~~Gy--~V~~A~-----dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~L 99 (603)
..+++||.+. +.....+..+.+..+. .|.... +..+..+++.. .|++|+--.. ..-|+-+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 5788999886 3445566666655443 344321 23466677764 5788774332 33467788877
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
. ..+|||... .....+.+..|..+++.. +.++|...|..++.
T Consensus 337 a-----~G~PvI~~~----~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W-----KGKPVIGRA----VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H-----TTCCEEEES----CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H-----cCCCEEEcc----CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 4 367888643 234556666788999996 99999999988865
No 285
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=37.26 E-value=33 Score=32.01 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=22.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD 63 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~d 63 (603)
|+++|+|||........+.+.|+..|+++..+.+
T Consensus 1 M~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~ 34 (200)
T 1ka9_H 1 MRMKALLIDYGSGNLRSAAKALEAAGFSVAVAQD 34 (200)
T ss_dssp --CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS
T ss_pred CccEEEEEeCCCccHHHHHHHHHHCCCeEEEecC
Confidence 5579999974322334467888888988877764
No 286
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=37.25 E-value=92 Score=33.71 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
..+.++.+.+.. +|+|.+|...+... -+++++.+++. .+++|||+ ....+.+.+..+.++||+.+.+
T Consensus 230 ~~~~a~~l~~aG--~d~I~id~a~g~~~~~~~~v~~i~~~--~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 230 TGERVAALVAAG--VDVVVVDTAHGHSKGVIERVRWVKQT--FPDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHHHTT--CSEEEEECSCCSBHHHHHHHHHHHHH--CTTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHhhcc--cceEEecccCCcchhHHHHHHHHHHH--CCCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 344444444433 89999998876543 45788888764 25788876 3345678889999999998876
No 287
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.17 E-value=38 Score=32.13 Aligned_cols=70 Identities=10% Similarity=-0.018 Sum_probs=48.0
Q ss_pred EECCHHHHHHHHhcCCCCceEEEEeCCCCCC--------CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCc
Q 007462 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPSI--------SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA 131 (603)
Q Consensus 60 ~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm--------DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~ 131 (603)
.+.+..++.+.. . ..|.|+++-..|.. -|++.++.+...- ..++|||.+-+-. .+.+.+++..|++
T Consensus 94 s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~-~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 94 SCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAK-IIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTT-CSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred ecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhc-CCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 467888876553 2 27999987655422 3678888886521 0368999887765 6677889999999
Q ss_pred EEEe
Q 007462 132 DYLV 135 (603)
Q Consensus 132 DyL~ 135 (603)
++-+
T Consensus 168 gVav 171 (210)
T 3ceu_A 168 GAVV 171 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8854
No 288
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=36.94 E-value=65 Score=31.73 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCCC---HHHHHHHHHhcccCCCCeEEEEecC-CCHHHHHHHHHcCCcEEEeC
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPSIS---GFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPgmD---GleLLr~Lr~~~~~~~IPVImlSa~-~d~~~~~~al~~GA~DyL~K 136 (603)
.++++.+.+.. .|+|.+-.. -++. -+++++++|+ .++|||+|+.. ... ..|++++|+-
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S-~g~t~~~~~~~v~~ir~----~~~Pivl~~y~~n~i-------~~gvDg~iip 84 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGT-QNVTYEKARTLIEKVSQ----YGLPIVVEPSDPSNV-------VYDVDYLFVP 84 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCC-TTCCHHHHHHHHHHHTT----SCCCEEECCSSCCCC-------CCCSSEEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCC-CCCCHHHHHHHHHHhcC----CCCCEEEecCCcchh-------hcCCCEEEEc
Confidence 34455555443 688888763 2232 4566666654 47999999988 433 7899999876
No 289
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=36.82 E-value=20 Score=35.11 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCCEEEEEecCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeC
Q 007462 30 MALRVLLVEADDS--------TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 30 m~lrVLLVDDD~~--------~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl 85 (603)
|+++|+|+.+... ....+...|++.||+|+.+......+..+... .+|+|+.-+
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~--~~d~v~~~~ 62 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM--GFQKVFIAL 62 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTT--TEEEEEECC
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhcc--CCCEEEEcC
Confidence 4578999987542 33456777788999988876432223333322 489888765
No 290
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=36.72 E-value=32 Score=32.82 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=37.7
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHHhcc--cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 78 IDLILTEVDLPSISG-------FALLTLVMEHE--ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 78 pDLVLlDl~MPgmDG-------leLLr~Lr~~~--~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.|.|+++-..|+..| ++.+++|++.. ...++||++.-+-. .+.+.+++.+||+.+.+-
T Consensus 141 ~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvg 207 (230)
T 1rpx_A 141 VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAG 207 (230)
T ss_dssp CSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEES
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 789988887775543 45556665431 01257876655544 566777888999988754
No 291
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=36.70 E-value=65 Score=29.63 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCEEEE---ECCHHHHH-HHHh--cCCCCceEEEEe
Q 007462 41 DSTRQIVTALLRKSSYRVTA---VPDGLKAW-EVLK--GRPRNIDLILTE 84 (603)
Q Consensus 41 ~~~r~lL~~lL~~~Gy~V~~---A~dg~eAL-e~L~--~~~~~pDLVLlD 84 (603)
......|..+|...|++|.. +.|-.+.+ +.+. .....+||||+-
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 45667899999999998754 55554433 2232 111247888874
No 292
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=36.66 E-value=1.7e+02 Score=28.70 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=57.0
Q ss_pred EEEEEecCH-HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 007462 33 RVLLVEADD-STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 33 rVLLVDDD~-~~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
.+++.+++. .-..+...+.+..|.+++.. .|....+..++... +|+||+- ....++..+++++++..
T Consensus 146 ~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~--~d~v~~~--~~~~~~~~~~~~~~~~g- 220 (353)
T 4gnr_A 146 VVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKD--FDAIVVP--GYYNEAGKIVNQARGMG- 220 (353)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTSC--CSEEECC--SCHHHHHHHHHHHHHTT-
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEe--cCcHHHHHHHHHHHHcC-
Confidence 445555543 44445555556678776542 36777888887655 9999964 33456778888887754
Q ss_pred CCCCeEEEEecCCCHHHHHHHHH
Q 007462 105 CKNIPVIMMSSQDSVSTVYKCMM 127 (603)
Q Consensus 105 ~~~IPVImlSa~~d~~~~~~al~ 127 (603)
...|++.............+..
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~ 242 (353)
T 4gnr_A 221 -IDKPIVGGDGFNGEEFVQQATA 242 (353)
T ss_dssp -CCSCEEECGGGCSHHHHHHHCT
T ss_pred -CCCcEEEecccccchhhhhhhh
Confidence 4567777666666666555433
No 293
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=36.55 E-value=2.7e+02 Score=28.74 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=56.1
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC--CCCeEEEEecCCCHHHHHHHHHcCCcEEEe-CCCC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC--KNIPVIMMSSQDSVSTVYKCMMRGAADYLV-KPVR 139 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~--~~IPVImlSa~~d~~~~~~al~~GA~DyL~-KP~~ 139 (603)
...+.++.+.... +|.||+|+.-.-.+--.+...|+..... ...++++=+...+...+..++..|++.+++ |=-+
T Consensus 51 ~~p~~~e~a~~~G--aD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~s 128 (339)
T 1izc_A 51 PSTFVTKVLAATK--PDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVET 128 (339)
T ss_dssp CCHHHHHHHHHTC--CSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCC
T ss_pred CCHHHHHHHHhCC--CCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCC
Confidence 3444555555444 9999999976555544555555432211 126777777777888899999999998654 4446
Q ss_pred HHHHHHHHHHH
Q 007462 140 RNELRNLWQHV 150 (603)
Q Consensus 140 ~~eL~~~L~~v 150 (603)
.++++.+...+
T Consensus 129 aee~~~~~~~~ 139 (339)
T 1izc_A 129 VEEVREFVKEM 139 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78887765543
No 294
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=36.55 E-value=46 Score=33.79 Aligned_cols=108 Identities=9% Similarity=0.129 Sum_probs=61.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHhcCCCCceE-EEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAWEVLKGRPRNIDL-ILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~-~~Gy~V~~A~dg~eALe~L~~~~~~pDL-VLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
|+++|.||.--..-+......|. ..+++++.+.+...+-+..+... .+.+ +..|+ +.|-.. ++
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~-~~~~~~~~~~-----------~~ll~~---~~ 65 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFK-EKGVNFTADL-----------NELLTD---PE 65 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHH-TTTCEEESCT-----------HHHHSC---TT
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhC-CCCCeEECCH-----------HHHhcC---CC
Confidence 56889999887766544444444 34778776554332222211100 0122 22222 233222 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHH
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v~r 152 (603)
+-+|+++. ....+.+.+|++.|..=|+-||+. .++...+++.+-+
T Consensus 66 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 114 (349)
T 3i23_A 66 IELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQE 114 (349)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 44444433 346777889999999999999975 7787777765543
No 295
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=36.42 E-value=97 Score=31.77 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=45.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCC-----CHHHHHHHHHh
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSI-----SGFALLTLVME 101 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~-Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm-----DGleLLr~Lr~ 101 (603)
...+|.+||=++.+.+..+..+... +-++. ...|+.+.++.+.. ..||+||+|+..+.. ...++++.++.
T Consensus 112 p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r 188 (317)
T 3gjy_A 112 PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGAITPQNFTTVEFFEHCHR 188 (317)
T ss_dssp TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTSCCCGGGSBHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCccccchhhhHHHHHHHHHH
Confidence 3569999999999999999888543 22232 35677665543322 349999999865532 12466666654
No 296
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=36.32 E-value=72 Score=31.89 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=55.4
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCH---------HHHHHHHHh
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTA-VP--DGLKAWEVLKGRPRNIDLILTEVDLPSISG---------FALLTLVME 101 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDG---------leLLr~Lr~ 101 (603)
|++.|-.......+...+++.|+.++. +. +..+-++.+......|+ ++. .+.+..| .++++++++
T Consensus 123 viv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfi--y~v-s~~G~TG~~~~~~~~~~~~v~~vr~ 199 (271)
T 1ujp_A 123 VILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFV--YAV-SVTGVTGMRERLPEEVKDLVRRIKA 199 (271)
T ss_dssp EECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCE--EEE-CC------------CCHHHHHHHHT
T ss_pred EEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCE--EEE-ecCcccCCCCCCCccHHHHHHHHHh
Confidence 455544444455556666666765332 22 33444444444333344 333 3443333 478888876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
. .++||++=.+-.+.+.+.++ .||+..++-
T Consensus 200 ~---~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 200 R---TALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp T---CCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred h---cCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 4 37899887788888888885 999999875
No 297
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=36.11 E-value=1.1e+02 Score=29.09 Aligned_cols=89 Identities=8% Similarity=-0.034 Sum_probs=60.2
Q ss_pred CCCE-EEEECCHHHHHHHHhcCCCCceEEEEeCCCCC-C-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCC
Q 007462 54 SSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGA 130 (603)
Q Consensus 54 ~Gy~-V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-m-DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA 130 (603)
.|.. +..+.+..++.+.++.. .|.|-+ .|. . -|++.++.++.. .+++||+.+-+-. .+.+...+.+|+
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~G---ad~v~~---fpa~~~gG~~~lk~l~~~--~~~ipvvaiGGI~-~~n~~~~l~aGa 173 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALALG---LSALKF---FPAEPFQGVRVLRAYAEV--FPEVRFLPTGGIK-EEHLPHYAALPN 173 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHTT---CCEEEE---TTTTTTTHHHHHHHHHHH--CTTCEEEEBSSCC-GGGHHHHHTCSS
T ss_pred hCCCEEecCCCHHHHHHHHHCC---CCEEEE---ecCccccCHHHHHHHHhh--CCCCcEEEeCCCC-HHHHHHHHhCCC
Confidence 4554 33588999998888753 788877 453 2 388999999753 3589998766654 678888999998
Q ss_pred cEEEeC----CCCHHHHHHHHHHHH
Q 007462 131 ADYLVK----PVRRNELRNLWQHVW 151 (603)
Q Consensus 131 ~DyL~K----P~~~~eL~~~L~~v~ 151 (603)
+.+.+= +-+..++....+.+.
T Consensus 174 ~~vavgSai~~~d~~~i~~~a~~~~ 198 (207)
T 2yw3_A 174 LLAVGGSWLLQGNLEAVRAKVRAAK 198 (207)
T ss_dssp BSCEEESGGGSSCHHHHHHHHHHHH
T ss_pred cEEEEehhhhCCCHHHHHHHHHHHH
Confidence 776422 144555555555443
No 298
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=35.90 E-value=92 Score=29.60 Aligned_cols=65 Identities=12% Similarity=0.213 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCEEEEECCH------HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 43 TRQIVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~dg------~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
+...+...+++.||.+..+... .+.++.+.... +|-||+--.. .+ -++++.+.. ..+|||++...
T Consensus 31 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--vdgiIi~~~~--~~-~~~~~~l~~----~~iPvV~~~~~ 101 (292)
T 3k4h_A 31 VIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQ--IGGIILLYSR--EN-DRIIQYLHE----QNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTC--CCEEEESCCB--TT-CHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEEeCCC--CC-hHHHHHHHH----CCCCEEEECCC
Confidence 3445556677889988775421 22455555544 8988873211 11 256666654 36899988654
No 299
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=35.84 E-value=1.1e+02 Score=29.81 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~ 62 (603)
|.++|||..-.-.+-..|...|...|++|+.+.
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 456899999888888888888877888887654
No 300
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=35.73 E-value=1.1e+02 Score=33.36 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCCC------CCHHHHHHHHHhcc----cCCCCeEE
Q 007462 44 RQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------ISGFALLTLVMEHE----ICKNIPVI 111 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MPg------mDGleLLr~Lr~~~----~~~~IPVI 111 (603)
.+.|+.+-+..+.-|+ .+.+.++|..+.+.. +|.|++.-. .+ ...++++..+.+.- ....+|||
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aG---ad~I~vs~h-gG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVi 407 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIG---VSGVVLSNH-GGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVF 407 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHHTT---CSEEEECCT-TTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHcC---CCEEEEcCC-CCccCCCCCchHHHHHHHHHHHHhhccCCCcEEE
Confidence 3445544444555443 366788887766542 788888421 11 23467777765431 12479999
Q ss_pred EEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 112 MMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 112 mlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+-.+..+...+.+++.+||+...+-
T Consensus 408 a~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 408 VDGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEC
Confidence 9999999999999999999988754
No 301
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=35.55 E-value=1.6e+02 Score=25.30 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=46.4
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
+.+...+|.-||-++......+..+...+..+.. ..+..+.+..+......+|+|+++.... .+--++++.+.
T Consensus 59 l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 59 AASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp HHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred HHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 3333456999999999999999888766644333 4466665554433212499999995432 33345666665
No 302
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=35.53 E-value=72 Score=32.01 Aligned_cols=60 Identities=3% Similarity=-0.057 Sum_probs=30.8
Q ss_pred CCCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH
Q 007462 30 MALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92 (603)
Q Consensus 30 m~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG 92 (603)
...+|++|+.|.. ..+.|..+.+..|..+....++.+....+... ..+|+||+| .|+.+.
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~~ 195 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRNF 195 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCCT
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCCh
Confidence 3457888887762 22334444444454433333433332222221 248999999 555553
No 303
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=35.49 E-value=1.2e+02 Score=31.93 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCCC-----CCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 007462 45 QIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL-----PSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~M-----PgmDGleLLr~Lr~~~~~~~IPVImlSa~~ 117 (603)
+.++.+-+..+..|+ .+.+.++|..+.+.. +|.|++.-.- -+..-++++.++++. ....+|||+-.+..
T Consensus 242 ~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aG---ad~I~vs~~ggr~~~~g~~~~~~l~~v~~a-v~~~ipVia~GGI~ 317 (392)
T 2nzl_A 242 EDIKWLRRLTSLPIVAKGILRGDDAREAVKHG---LNGILVSNHGARQLDGVPATIDVLPEIVEA-VEGKVEVFLDGGVR 317 (392)
T ss_dssp HHHHHHC--CCSCEEEEEECCHHHHHHHHHTT---CCEEEECCGGGTSSTTCCCHHHHHHHHHHH-HTTSSEEEECSSCC
T ss_pred HHHHHHHHhhCCCEEEEecCCHHHHHHHHHcC---CCEEEeCCCCCCcCCCCcChHHHHHHHHHH-cCCCCEEEEECCCC
Confidence 334444333444333 367788887777642 7888884211 123456777777653 22369999988899
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 007462 118 SVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 118 d~~~~~~al~~GA~DyL~K 136 (603)
+...+.+++.+||+...+-
T Consensus 318 ~g~Dv~kalalGAd~V~iG 336 (392)
T 2nzl_A 318 KGTDVLKALALGAKAVFVG 336 (392)
T ss_dssp SHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHhCCCeeEEC
Confidence 9999999999999998754
No 304
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=35.46 E-value=31 Score=33.19 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=35.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD 86 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~ 86 (603)
|+++|||..- -.+-..|...|...|++|+.+.-.......+.... +.++..|+.
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~--~~~~~~D~~ 57 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASG--AEPLLWPGE 57 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTT--EEEEESSSS
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCC--CeEEEeccc
Confidence 5689999998 88888888888888999887543333333333222 556665553
No 305
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=35.44 E-value=2.6e+02 Score=28.07 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=45.9
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..+.++.+.+.. +|+|.+....| .++++.++.. .++||... .+...+..+...|++.+++-
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 3457777776654 89999988776 5788888753 57777543 45677888999999999873
No 306
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=35.41 E-value=84 Score=31.41 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=67.0
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCC----CC-CCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 47 VTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL----PS-ISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 47 L~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~M----Pg-mDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
.-..|+..|+.+.. +.+|-..+..|.... ||.|=+|-.+ .. .....+++.|......-++.| +.-+..+.
T Consensus 168 ~l~~Lr~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~v-vAEGVEt~ 244 (294)
T 2r6o_A 168 CLDALRARGVRLALDDFGTGYSSLSYLSQLP--FHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEV-VAEGIETA 244 (294)
T ss_dssp HHHHHHHHTCEEEEEEETSSCBCHHHHHHSC--CCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEE-EECCCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEE-EEecCCcH
Confidence 34446777887654 677777777887755 9999998422 21 123455555543222234444 46778889
Q ss_pred HHHHHHHHcCCcE----EEeCCCCHHHHHHHHHH
Q 007462 120 STVYKCMMRGAAD----YLVKPVRRNELRNLWQH 149 (603)
Q Consensus 120 ~~~~~al~~GA~D----yL~KP~~~~eL~~~L~~ 149 (603)
+....+.++|++. |+.||...+++...+..
T Consensus 245 ~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 245 QQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp HHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 9999999999865 37899999999877654
No 307
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=34.94 E-value=1.8e+02 Score=28.96 Aligned_cols=80 Identities=10% Similarity=-0.007 Sum_probs=52.1
Q ss_pred CEEEEEecC-HH---HHHHHHHHHHhC--CCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHH
Q 007462 32 LRVLLVEAD-DS---TRQIVTALLRKS--SYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (603)
Q Consensus 32 lrVLLVDDD-~~---~r~lL~~lL~~~--Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~ 98 (603)
-+|.||-++ .. ....++..|+.. |..++.. .+....+..++... +|+||+... +.+...++++
T Consensus 143 ~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~--~d~v~~~~~--~~~~~~~~~~ 218 (387)
T 3i45_A 143 TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAE--PEGLFNVLF--GADLPKFVRE 218 (387)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTC--CSEEEECCC--TTHHHHHHHH
T ss_pred CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCC--CCEEEEcCc--cHHHHHHHHH
Confidence 467666544 32 344566667766 7776531 36667777777654 999998643 4567888899
Q ss_pred HHhcccCCCCeEEEEec
Q 007462 99 VMEHEICKNIPVIMMSS 115 (603)
Q Consensus 99 Lr~~~~~~~IPVImlSa 115 (603)
+++.....+++|+-...
T Consensus 219 ~~~~g~~~~~~i~~~~~ 235 (387)
T 3i45_A 219 GRVRGLFAGRQVVSMLT 235 (387)
T ss_dssp HHHHTSSTTCEEEEEEE
T ss_pred HHHcCCCCCCeEEeecC
Confidence 88766555677775543
No 308
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=34.93 E-value=2.2e+02 Score=24.55 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP 137 (603)
.++|+.|++. .++++++|+.........+-.+|...|+..+
T Consensus 42 ~~~l~~l~~~----g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 42 GIGIKLLQKM----GITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp HHHHHHHHTT----TCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHC----CCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 4788888653 5799999998877776667778998888543
No 309
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.68 E-value=1.2e+02 Score=29.20 Aligned_cols=68 Identities=13% Similarity=0.235 Sum_probs=41.3
Q ss_pred CHHHHH---HHHHHHHhCCCEEEEEC-----CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 40 DDSTRQ---IVTALLRKSSYRVTAVP-----DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 40 D~~~r~---lL~~lL~~~Gy~V~~A~-----dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
++.... .+...+.+.||.+..+. ...+.++.+.... +|-||+--..+.. +.++.+.. ..+|||
T Consensus 22 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~~~---~~~~~l~~----~~iPvV 92 (294)
T 3qk7_A 22 NSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRR--VDALIVAHTQPED---FRLQYLQK----QNFPFL 92 (294)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTC--CSEEEECSCCSSC---HHHHHHHH----TTCCEE
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCC--CCEEEEeCCCCCh---HHHHHHHh----CCCCEE
Confidence 454444 45555677899876643 2345667776544 8888874332222 56666654 368999
Q ss_pred EEecC
Q 007462 112 MMSSQ 116 (603)
Q Consensus 112 mlSa~ 116 (603)
++...
T Consensus 93 ~~~~~ 97 (294)
T 3qk7_A 93 ALGRS 97 (294)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 88653
No 310
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=34.68 E-value=1.2e+02 Score=29.55 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCEEEEECC------HHHHHHHHhcCCCCceEEEEe-CCC---CC-----------CCHHHHHHHHHhccc
Q 007462 46 IVTALLRKSSYRVTAVPD------GLKAWEVLKGRPRNIDLILTE-VDL---PS-----------ISGFALLTLVMEHEI 104 (603)
Q Consensus 46 lL~~lL~~~Gy~V~~A~d------g~eALe~L~~~~~~pDLVLlD-l~M---Pg-----------mDGleLLr~Lr~~~~ 104 (603)
.|..+|+..+++|..... ....++.|. .+|+||++ +.- .. .+-+++|++...
T Consensus 44 ~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~----~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~--- 116 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMPAHTVQIAFPESIDELN----RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVK--- 116 (256)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH----TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHH---
T ss_pred HHHHHHHhcCceEEEEecccchhhCCcChhHHh----cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHH---
Confidence 455555556899887631 111123444 28998886 321 00 334566666543
Q ss_pred CCCCeEEEEecC
Q 007462 105 CKNIPVIMMSSQ 116 (603)
Q Consensus 105 ~~~IPVImlSa~ 116 (603)
....+|++.+.
T Consensus 117 -~GGgll~igG~ 127 (256)
T 2gk3_A 117 -NGGGLLMIGGY 127 (256)
T ss_dssp -TTCEEEEECST
T ss_pred -hCCEEEEECCh
Confidence 25688888764
No 311
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=34.67 E-value=1.7e+02 Score=29.32 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=60.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++|.||.--..-...+..+....+++++.+ . +...+-+..+. +.+-..+ | ++.+-.. +++
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----~g~~~~~------~----~~~~l~~---~~~ 66 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA----NGAEAVA------S----PDEVFAR---DDI 66 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT----TTCEEES------S----HHHHTTC---SCC
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----cCCceeC------C----HHHHhcC---CCC
Confidence 4799999987666666666655557887754 3 33333333332 2222221 1 1233221 233
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 007462 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (603)
Q Consensus 109 PVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~ 151 (603)
-+|+++. ....+.+..|++.|..=|+.||+ +.++...++..+.
T Consensus 67 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 113 (344)
T 3euw_A 67 DGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIG 113 (344)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHG
T ss_pred CEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4444443 34677788999999999999995 4667776665543
No 312
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=34.41 E-value=84 Score=31.79 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=16.1
Q ss_pred CCEEEEEecCH----HHHHHHHHHHHhCCCEEEEEC
Q 007462 31 ALRVLLVEADD----STRQIVTALLRKSSYRVTAVP 62 (603)
Q Consensus 31 ~lrVLLVDDD~----~~r~lL~~lL~~~Gy~V~~A~ 62 (603)
+||||++-... .-...|...|+..|++|..+.
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~ 55 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAV 55 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEec
Confidence 35777775321 112234445566677666543
No 313
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=34.41 E-value=1.5e+02 Score=29.95 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=63.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh-CCCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
+++|.||.--..-...+..+... .+++++.+ . +.+.+-+..+. +.+-..+ |--+++.. ++
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----~~~~~~~------~~~~ll~~-------~~ 75 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----TGARGHA------SLTDMLAQ-------TD 75 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----HCCEEES------CHHHHHHH-------CC
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----cCCceeC------CHHHHhcC-------CC
Confidence 47999999876666667666665 57887654 3 34444333332 2222221 22233321 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+-+|+++. ....+.+..|++.|..=|+.||+ +.++...+++.+.+.
T Consensus 76 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~ 125 (354)
T 3q2i_A 76 ADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKA 125 (354)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 34444443 33567788999999999999996 567777666655433
No 314
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=34.11 E-value=81 Score=30.90 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=34.3
Q ss_pred CEEEEEecC--------------------HHHHHHHHHHHHhCCCEEEEECCHH-----------------HHHHHHhcC
Q 007462 32 LRVLLVEAD--------------------DSTRQIVTALLRKSSYRVTAVPDGL-----------------KAWEVLKGR 74 (603)
Q Consensus 32 lrVLLVDDD--------------------~~~r~lL~~lL~~~Gy~V~~A~dg~-----------------eALe~L~~~ 74 (603)
||||+|-.. ......+...|.+.|++|..+.... ...+.++..
T Consensus 4 mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 83 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRTA 83 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHHC
T ss_pred cEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHhc
Confidence 699999887 2344456666777899988765321 344555543
Q ss_pred CCCceEEEEeCCCC
Q 007462 75 PRNIDLILTEVDLP 88 (603)
Q Consensus 75 ~~~pDLVLlDl~MP 88 (603)
. ||||++-...+
T Consensus 84 ~--~Dvi~~~~~~~ 95 (342)
T 2iuy_A 84 D--VDVVHDHSGGV 95 (342)
T ss_dssp C--CSEEEECSSSS
T ss_pred C--CCEEEECCchh
Confidence 3 77777655443
No 315
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=34.11 E-value=30 Score=32.01 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=44.7
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEe-CCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE-VDLPSISGFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlD-l~MPgmDGleLLr~Lr~~~~~~~IPVIm 112 (603)
|+|||-.......+..+|+..|+++..+.... .++.+... .+|.||+= -.-|...+. +++.|+.. ...++||+-
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~--~~dglil~Gg~~~~~~~~-~~~~i~~~-~~~~~PilG 77 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAM--NPKGIIFSGGPSLENTGN-CEKVLEHY-DEFNVPILG 77 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHT--CCSEEEECCCSCTTCCTT-HHHHHHTG-GGTCSCEEE
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhccc--CCCEEEECCCCChhhhhh-HHHHHHHH-hhCCCeEEE
Confidence 99999888878899999999999877665332 22333322 27876662 112222221 23334322 124678876
Q ss_pred Eec
Q 007462 113 MSS 115 (603)
Q Consensus 113 lSa 115 (603)
+..
T Consensus 78 IC~ 80 (189)
T 1wl8_A 78 ICL 80 (189)
T ss_dssp ETH
T ss_pred EcH
Confidence 663
No 316
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=34.10 E-value=1.8e+02 Score=27.70 Aligned_cols=66 Identities=8% Similarity=0.066 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 42 STRQIVTALLRKSSYRVTAVPD------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 42 ~~r~lL~~lL~~~Gy~V~~A~d------g~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
.+...+...++..||.+..+.. ..+.++.+.... +|.||+--..+. + +.++.+.. ..+|||++..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~~~~ 95 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGN--VDGFVLSSINYN-D--PRVQFLLK----QKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTC--CSEEEECSCCTT-C--HHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCC--CCEEEEeecCCC-c--HHHHHHHh----cCCCEEEECC
Confidence 3455566677788998876531 245677776544 898887432222 2 55666643 3689998865
Q ss_pred C
Q 007462 116 Q 116 (603)
Q Consensus 116 ~ 116 (603)
.
T Consensus 96 ~ 96 (287)
T 3bbl_A 96 S 96 (287)
T ss_dssp C
T ss_pred c
Confidence 3
No 317
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=34.02 E-value=1.1e+02 Score=30.93 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=61.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
++++|.||.--..-+..+..+....+++++.+. +.+.+-+..+... +.. -.|--+++. . ++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g--~~~--------~~~~~~~l~----~---~~ 66 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN--CAG--------DATMEALLA----R---ED 66 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHT--CCC--------CSSHHHHHH----C---SS
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC--CCC--------cCCHHHHhc----C---CC
Confidence 347999999876655555554444478877543 3444433333211 110 112223332 1 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+-+|+++. ....+.+..|++.|..=|+.||+ +.++...+++.+.+.
T Consensus 67 ~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (354)
T 3db2_A 67 VEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET 116 (354)
T ss_dssp CCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 33444433 34677788999999999999995 567777766655433
No 318
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=33.71 E-value=81 Score=31.83 Aligned_cols=73 Identities=23% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCEEEEEecC----HHHHHHHHHHHHhCCCEEEEECCHH-----------------------------------------
Q 007462 31 ALRVLLVEAD----DSTRQIVTALLRKSSYRVTAVPDGL----------------------------------------- 65 (603)
Q Consensus 31 ~lrVLLVDDD----~~~r~lL~~lL~~~Gy~V~~A~dg~----------------------------------------- 65 (603)
.||||++-.. ..-...|...|+..|++|..+..+.
T Consensus 15 ~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T 4fzr_A 15 HMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEK 94 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSHH
T ss_pred ceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccccccchh
Q ss_pred -------------------HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 66 -------------------KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 66 -------------------eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
+..+.++... ||+|+.|. ...-|.-+.+.+ .+|+|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--pDlVv~d~--~~~~~~~~a~~~-------giP~v~~~ 151 (398)
T 4fzr_A 95 PLLEHIGRGYGRLVLRMRDEALALAERWK--PDLVLTET--YSLTGPLVAATL-------GIPWIEQS 151 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCTHHHHHHHHH-------TCCEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEECc--cccHHHHHHHhh-------CCCEEEec
No 319
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=33.29 E-value=1.6e+02 Score=29.39 Aligned_cols=85 Identities=8% Similarity=0.018 Sum_probs=52.7
Q ss_pred CEEEEEecCHHH----HHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEADDST----RQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD~~~----r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.||-++... ...++..|+..|..++.. .+....+..+.... ||+||+.. .+.+...+++.++
T Consensus 144 ~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~--~dav~~~~--~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAG--VEYVVHQN--VAGPVANILKDAK 219 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTT--CCEEEEES--CHHHHHHHHHHHH
T ss_pred CEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcC--CCEEEEec--CcchHHHHHHHHH
Confidence 466666544332 335666777778876531 35667777776644 89999753 3455777888887
Q ss_pred hcccCCCCeEEEEecCCCHHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVSTV 122 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~ 122 (603)
+.. -.+|++......+....
T Consensus 220 ~~g--~~~~~~~~~~~~~~~~~ 239 (392)
T 3lkb_A 220 RLG--LKMRHLGAHYTGGPDLI 239 (392)
T ss_dssp HTT--CCCEEEECGGGCSHHHH
T ss_pred HcC--CCceEEEecCcccHHHH
Confidence 654 35777665544454443
No 320
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=33.00 E-value=65 Score=31.58 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=66.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCC---------CCCCCHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD---------LPSISGFALLTLV 99 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~---------MPgmDGleLLr~L 99 (603)
..+++||.+.+ ....++.+.+..+-.|.. .-+..+..+++.. .|++|+=.. ..+.-|+-+++.+
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAm 262 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAA 262 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHH
Confidence 57888888754 334455555443333333 3456666777764 578776433 1334467788877
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHc--CCcEEEeCCCCHHHHHHHHHHHH
Q 007462 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMR--GAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~~d~~~~~~al~~--GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
. ..+|||... .. ...+.+.. |..+++..| +.++|...|.+++
T Consensus 263 a-----~G~PvI~s~-~~---~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 263 V-----SGTPVVGTG-NG---CLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp H-----TTCCEEECC-TT---THHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred h-----cCCCEEEcC-CC---ChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 4 357888533 22 24455666 778889999 9999998887664
No 321
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=33.00 E-value=92 Score=32.23 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=51.9
Q ss_pred CCEEEEEecCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH
Q 007462 31 ALRVLLVEADDS-----TRQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (603)
Q Consensus 31 ~lrVLLVDDD~~-----~r~lL~~lL~~~Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL 96 (603)
.-++|||-|... ....+...|+..|+++..+. +..++++.+++.. +|+||- ..|..-+++.
T Consensus 40 g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~IIa---vGGGsv~D~A 114 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDS--FDFVVG---LGGGSPMDFA 114 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSC--CSEEEE---EESHHHHHHH
T ss_pred CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcC--CCEEEE---eCChHHHHHH
Confidence 358999998733 34667778888887654331 4456667776543 898883 4566677777
Q ss_pred HHHHhcccC---------------CCCeEEEEec
Q 007462 97 TLVMEHEIC---------------KNIPVIMMSS 115 (603)
Q Consensus 97 r~Lr~~~~~---------------~~IPVImlSa 115 (603)
+.+...... +.+|+|.+-.
T Consensus 115 K~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 148 (371)
T 1o2d_A 115 KAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT 148 (371)
T ss_dssp HHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC
T ss_pred HHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeC
Confidence 777543221 5788886633
No 322
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=32.71 E-value=59 Score=34.18 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=68.0
Q ss_pred CccchHHhhhcCCCEEEEEec--CHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHh-------------------cC
Q 007462 19 GIAKWETFLQRMALRVLLVEA--DDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLK-------------------GR 74 (603)
Q Consensus 19 ~~v~we~fl~~m~lrVLLVDD--D~~~---r~lL~~lL~~~Gy~V~~A~dg~eALe~L~-------------------~~ 74 (603)
....|.. ...+|+||-- ++.. ...|..+|...|+.|..-....+.+.... +.
T Consensus 30 ~~l~w~~----~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (365)
T 3pfn_A 30 QRLTWNK----SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI 105 (365)
T ss_dssp CBEEESS----CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC
T ss_pred cccccCC----CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc
Confidence 3567864 3468999963 3433 34455556677998876443333322211 11
Q ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhc
Q 007462 75 PRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (603)
Q Consensus 75 ~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr~ 154 (603)
...+|+||+= |.||. +|+..+.. ....+|||-+. .|-.+||. ++..+++...|..++.+.
T Consensus 106 ~~~~DlvI~l----GGDGT-~L~aa~~~-~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 106 SNQIDFIICL----GGDGT-LLYASSLF-QGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp TTTCSEEEEE----SSTTH-HHHHHHHC-SSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred ccCCCEEEEE----cChHH-HHHHHHHh-ccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCC
Confidence 2347888762 67873 44444322 12468988665 37777887 788889999999888664
No 323
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=32.69 E-value=90 Score=30.88 Aligned_cols=86 Identities=8% Similarity=0.022 Sum_probs=54.0
Q ss_pred CEEEEEe-cCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVE-ADDS---TRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVD-DD~~---~r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+|. |+.. ....+++.|+..|.+++. . .+....+..+.... ||+||+.. .+.+...+++.++
T Consensus 160 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~--~dav~~~~--~~~~a~~~~~~~~ 235 (386)
T 3sg0_A 160 KKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATK--PDAVFIAS--AGTPAVLPQKALR 235 (386)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTC--CSEEEEEC--CSGGGHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcC--CCEEEEec--CcchHHHHHHHHH
Confidence 4666654 4443 344556667777877641 2 36667777776644 89998854 2356778889988
Q ss_pred hcccCCCCeEEEEecCCCHHHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
+... .+|+|...+..+.....
T Consensus 236 ~~g~--~~~~~~~~~~~~~~~~~ 256 (386)
T 3sg0_A 236 ERGF--KGAIYQTHGVATEEFIK 256 (386)
T ss_dssp HTTC--CSEEECCGGGCSHHHHH
T ss_pred HcCC--CCcEEeccccCCHHHHH
Confidence 7653 46777666666655543
No 324
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=32.25 E-value=1.2e+02 Score=30.65 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=50.7
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD~~----~r~lL~~lL~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
.+|.||-++.. ....++..++..|.+|+.. .+....+..|+... +|+||+....+ .+...++++++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~--~d~v~~~~~~~-~~~~~~~~~~~ 241 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADP--PAVIVVTHFYP-QDQALFMNQFM 241 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSC--CSEEEECCCCH-HHHHHHHHHHT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcC--CCEEEEccccC-chHHHHHHHHH
Confidence 46666555443 4445566667778887642 36677788787654 99999863221 24667888887
Q ss_pred hcccCCCCeEEEEecCCCHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVST 121 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~ 121 (603)
+... ..+++...+..+.+.
T Consensus 242 ~~g~--~~~~~~~~~~~~~~~ 260 (419)
T 3h5l_A 242 TDPT--NSLVYLQYGASLAAF 260 (419)
T ss_dssp TSCC--SCEEEECSGGGSHHH
T ss_pred HcCC--CceEEecCCCCcHHH
Confidence 6543 445544434444443
No 325
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=32.23 E-value=3.1e+02 Score=28.60 Aligned_cols=87 Identities=8% Similarity=0.009 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCEEEE--E---CCHHHHHHHHhcCCCCceEEEEeCC--------------------CCCCCHHHHHHHH
Q 007462 45 QIVTALLRKSSYRVTA--V---PDGLKAWEVLKGRPRNIDLILTEVD--------------------LPSISGFALLTLV 99 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~~--A---~dg~eALe~L~~~~~~pDLVLlDl~--------------------MPgmDGleLLr~L 99 (603)
+.|+.+-+..+..|+. + .+.+.|..+.+.. +|.|.++-. --+....+.|..+
T Consensus 196 ~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aG---ad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v 272 (365)
T 3sr7_A 196 KHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLG---VKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNA 272 (365)
T ss_dssp HHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHT---CCEEECCCBC--------------CGGGTTCSCBHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcC---CCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHH
Confidence 4555555555554443 3 4667776666543 687776432 0122344566655
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+. ....+|||.-.+..+...+.+++.+||+...+-
T Consensus 273 ~~--~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 273 QP--LMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp GG--GTTTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HH--hcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 43 235799999888899999999999999998764
No 326
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=32.10 E-value=2.4e+02 Score=29.43 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCC-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPgm-DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+.++.+.+.. +|+|.+|..-... .-++.+++|++. .+++|||+- .....+.+.++.++||+.+.+
T Consensus 110 ~~~~~~lieaG--vd~I~idta~G~~~~~~~~I~~ik~~--~p~v~Vi~G-~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVEAG--VDVLLIDSSHGHSEGVLQRIRETRAA--YPHLEIIGG-NVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHH--CTTCEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhCC--CCEEEEeCCCCCCHHHHHHHHHHHHh--cCCCceEee-eeCCHHHHHHHHHcCCCEEEE
Confidence 45555554443 8999998643222 235677788754 257787752 234678888999999998887
No 327
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=32.03 E-value=2.6e+02 Score=28.18 Aligned_cols=94 Identities=15% Similarity=0.277 Sum_probs=59.0
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHH----HHHHHhcCCCCceEEEE-eCCCCCCC--HHHHHHHHHhcc
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLK----AWEVLKGRPRNIDLILT-EVDLPSIS--GFALLTLVMEHE 103 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~--dg~e----ALe~L~~~~~~pDLVLl-Dl~MPgmD--GleLLr~Lr~~~ 103 (603)
.|++.+|-.....+|..+ . .+..++... +..+ .++.+.+. -+++++ |..+|... |.++++.+++.
T Consensus 43 DvI~~edtr~~~~lL~~~-~-~~~~~i~~~~~~~~~~~~~li~~l~~G---~~Va~lsdaGdP~i~~~g~~lv~~~~~~- 116 (296)
T 3kwp_A 43 DLIAAEDTRNTQKLLNHF-E-ITTKQISFHEHNTQERIPQLIAKLKQG---MQIAQVSDAGMPSISDPGHELVNACIDA- 116 (296)
T ss_dssp SEEEESCHHHHHHHHHHT-T-CCCEEEECSTTTHHHHHHHHHHHHHTT---CEEEEECSSBCTTSSHHHHHHHHHHHHT-
T ss_pred hhhhhhccccHHHHhhhe-e-eeeeeeehhhcchhhHhHHHHHHHhcC---ceEEEeccCCCCCCCCCchHHHHHHHHc-
Confidence 567777754444444322 1 123444433 2223 33444433 478888 89999987 57888888653
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 104 ~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+++|.++-+......+..+..+-.++|..
T Consensus 117 ---gi~v~viPGiSA~~aA~a~~Glp~~~f~f 145 (296)
T 3kwp_A 117 ---HIPVVPLPGANAGLTALIASGLAPQPFYF 145 (296)
T ss_dssp ---TCCEEECCCCCHHHHHHHHHSSCCSSEEE
T ss_pred ---CCCeeeCCCcccchHHHHhccCCCCceeE
Confidence 68999999888888777777666666654
No 328
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=31.58 E-value=2.7e+02 Score=25.39 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=47.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHhcCC--CCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VT-AVPDGLKAWEVLKGRP--RNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~-~A~dg~eALe~L~~~~--~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
..+|..||-++......+..+...|+. |. ...+..+.+..+.... ..||+|++|... .+-..+++.+.
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~~ 161 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEESL 161 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHHH
Confidence 479999999999999999999887753 43 3567777776664310 249999998742 23344555554
No 329
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=31.32 E-value=37 Score=31.64 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=31.2
Q ss_pred CCCEEEEEecCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE
Q 007462 30 MALRVLLVEADDSTR-QIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (603)
Q Consensus 30 m~lrVLLVDDD~~~r-~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl 83 (603)
|+++|+|++.+.... ..+...|+..|+++..+...+ ....+|.||+
T Consensus 1 m~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--------~~~~~d~lil 47 (213)
T 3d54_D 1 MKPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD--------KLDDYELIIL 47 (213)
T ss_dssp CCCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC--------CCSSCSEEEE
T ss_pred CCcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC--------CcccCCEEEE
Confidence 567999998776653 456788888899888776431 1123777776
No 330
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=31.27 E-value=2.5e+02 Score=29.05 Aligned_cols=101 Identities=14% Similarity=0.212 Sum_probs=58.0
Q ss_pred CCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLV-DDD~~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
.++|+++ .+++..+..+..++... -.|..+. ...+-..++.. -|+||++- .|+. ++.. ...
T Consensus 257 ~~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~l~~~~~~~l~~~----ad~vv~~S-----Gg~~-~EA~-----a~g 320 (403)
T 3ot5_A 257 DTELVYPMHLNPAVREKAMAILGGH-ERIHLIEPLDAIDFHNFLRK----SYLVFTDS-----GGVQ-EEAP-----GMG 320 (403)
T ss_dssp TEEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHH----EEEEEECC-----HHHH-HHGG-----GTT
T ss_pred CceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCCCCHHHHHHHHHh----cCEEEECC-----ccHH-HHHH-----HhC
Confidence 3566665 55566666666655432 1333333 33455555543 57888773 2332 2222 247
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|+|++-...+... ..+.| ..+++.+ +.++|...+..++.
T Consensus 321 ~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 321 VPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp CCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 89997733333222 34667 5778776 99999998888764
No 331
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=31.22 E-value=75 Score=31.38 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPgm---DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.++++.+.+.. .|+|.+-.. -++ +.++++++||+ .++|||+|+.... .+..|++.||+-
T Consensus 23 ~~~~~~l~~~G--aD~ielG~S-~Gvt~~~~~~~v~~ir~----~~~Pivlm~y~~n------~i~~G~dg~iiP 84 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGGS-DGVTEDNVLRMMSKVRR----FLVPCVLEVSAIE------AIVPGFDLYFIP 84 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC-----CHHHHHHHHHHHTT----SSSCEEEECSCGG------GCCSCCSEEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCC-CCCCHHHHHHHHHHhhC----cCCCEEEecCccc------cccCCCCEEEEc
Confidence 34455555433 688877652 222 25677777754 4799999998731 227899999976
No 332
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=31.13 E-value=75 Score=31.00 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCEEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcc--cCCCCeEEE
Q 007462 45 QIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHE--ICKNIPVIM 112 (603)
Q Consensus 45 ~lL~~lL~~~Gy~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-------leLLr~Lr~~~--~~~~IPVIm 112 (603)
..+.+.+++.|..+..+- +..+.++.+.. ..|+|++=-.-|+..| ++-+++|++.. ...+++ |.
T Consensus 96 ~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~---~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~-I~ 171 (231)
T 3ctl_A 96 FRLIDEIRRHDMKVGLILNPETPVEAMKYYIH---KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IE 171 (231)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCE-EE
T ss_pred HHHHHHHHHcCCeEEEEEECCCcHHHHHHHHh---cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCce-EE
Confidence 445555667788755543 44444443332 3788876445565544 45556665432 112455 45
Q ss_pred EecCCCHHHHHHHHHcCCcEEEeC
Q 007462 113 MSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+.+--..+.+..+.++||+-+++-
T Consensus 172 VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 172 VDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp EESCCSTTTHHHHHHHTCCEEEEC
T ss_pred EECCcCHHHHHHHHHcCCCEEEEc
Confidence 566666778889999999999987
No 333
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.85 E-value=2.5e+02 Score=26.50 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 43 TRQIVTALLRKSSYRVTAVP---DG---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~---dg---~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
+...+...+++.||++..+. +. .+.++.+.... +|.||+--.-+. ...++++.+.. ..+|||++...
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 95 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQK--PDAIIEQLGNLD-VLNPWLQKIND----AGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHC--CSEEEEESSCHH-HHHHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChh-hhHHHHHHHHH----CCCcEEEecCC
Confidence 34556666778899877653 22 33455554443 898887522110 13355666644 37899988654
No 334
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=30.65 E-value=89 Score=33.87 Aligned_cols=69 Identities=10% Similarity=-0.114 Sum_probs=45.8
Q ss_pred CCHHHHHHHHhcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCC-CeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 62 PDGLKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKN-IPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 62 ~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG-leLLr~Lr~~~~~~~-IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+..+.++.+.+.. +++|.+|..-....+ ++.++.|+... ++ +||| +....+.+.+..+.++||+...+
T Consensus 241 ~~~~e~~~~l~e~g--v~~l~Vd~~~g~~~~~~~~i~~lk~~~--~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~V 311 (503)
T 1me8_A 241 RDFRERVPALVEAG--ADVLCIDSSDGFSEWQKITIGWIREKY--GDKVKVG-AGNIVDGEGFRYLADAGADFIKI 311 (503)
T ss_dssp SSHHHHHHHHHHHT--CSEEEECCSCCCSHHHHHHHHHHHHHH--GGGSCEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHHHhhh--ccceEEecccCcccchhhHHHHHHHhC--CCCceEe-eccccCHHHHHHHHHhCCCeEEe
Confidence 45556666665543 899999876443333 56667776542 34 6776 44556778888999999987754
No 335
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=30.64 E-value=1.1e+02 Score=29.35 Aligned_cols=67 Identities=16% Similarity=0.014 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCEEEEEC-----CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 44 RQIVTALLRKSSYRVTAVP-----DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~-----dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
...+...++..||++..+. +.. ++++.+.... +|.||+--..+. .-...++.+.. ..+|||++..
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiii~~~~~~-~~~~~~~~~~~----~giPvV~~~~ 94 (297)
T 3rot_A 22 FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATY--PSGIATTIPSDT-AFSKSLQRANK----LNIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTC--CSEEEECCCCSS-TTHHHHHHHHH----HTCCEEEESC
T ss_pred HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcC--CCEEEEeCCCHH-HHHHHHHHHHH----CCCCEEEEcC
Confidence 3445555677899987754 223 3455555444 898887422221 11456666654 3689998865
Q ss_pred CC
Q 007462 116 QD 117 (603)
Q Consensus 116 ~~ 117 (603)
..
T Consensus 95 ~~ 96 (297)
T 3rot_A 95 RP 96 (297)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 336
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=30.60 E-value=1.4e+02 Score=29.59 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=56.9
Q ss_pred CCCEEEEEecCHHHHH-HHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 30 MALRVLLVEADDSTRQ-IVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~-lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
|+++|.||.--..-.. .+..++...+++++.+. +.+.+-+..+... ...+..| -.++| . ++
T Consensus 1 m~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g--~~~~~~~-------~~~~l----~----~~ 63 (323)
T 1xea_A 1 MSLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR--VSATCTD-------YRDVL----Q----YG 63 (323)
T ss_dssp -CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT--CCCCCSS-------TTGGG----G----GC
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC--CCccccC-------HHHHh----h----cC
Confidence 4578999988655543 45555444577777444 3333333333321 1111111 12222 1 12
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHH
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVW 151 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v~ 151 (603)
+-+|+++. ....+.+..|++.|..=|+-||+. ..+...+++.+.
T Consensus 64 ~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~ 111 (323)
T 1xea_A 64 VDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAE 111 (323)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHH
T ss_pred CCEEEEECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 33444443 335577778999999888999974 667666665443
No 337
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=30.56 E-value=39 Score=33.71 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=37.6
Q ss_pred hhcCCCEEEEEecC----H----HHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeC
Q 007462 27 LQRMALRVLLVEAD----D----STRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 27 l~~m~lrVLLVDDD----~----~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl 85 (603)
.+.|+++|+|+--- . .....+...|+..||+|+.+......+..+... .+|+||.=+
T Consensus 9 ~~~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~--~~D~v~~~~ 73 (317)
T 4eg0_A 9 DPKRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDE--GFVRAFNAL 73 (317)
T ss_dssp CGGGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHT--TCCEEEECC
T ss_pred chhhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhc--CCCEEEEcC
Confidence 34577899999751 1 245667777888999999887433323344443 389998754
No 338
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=30.54 E-value=1.2e+02 Score=28.81 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 007462 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~ 117 (603)
...+...+.+.||.+..+. +.. +.++.+.... +|.||+--.-+. .-.++++.+.. .++|||++....
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~~ 99 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVHLK--VDAIFITTLDDV-YIGSAIEEAKK----AGIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTT--CSEEEEECSCTT-TTHHHHHHHHH----TTCCEEEESSCC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEecCChH-HHHHHHHHHHH----cCCCEEEecCCC
Confidence 3445556678899877643 232 4455555544 898887432222 12266777754 378999886543
No 339
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=30.53 E-value=1.9e+02 Score=25.87 Aligned_cols=79 Identities=19% Similarity=0.163 Sum_probs=43.4
Q ss_pred CEEEEEecCHHHH--HHHHHHHHhCCCEEEE--E---CCHHHHHHH----HhcCCCCceEEEEeCCCCCCC--H------
Q 007462 32 LRVLLVEADDSTR--QIVTALLRKSSYRVTA--V---PDGLKAWEV----LKGRPRNIDLILTEVDLPSIS--G------ 92 (603)
Q Consensus 32 lrVLLVDDD~~~r--~lL~~lL~~~Gy~V~~--A---~dg~eALe~----L~~~~~~pDLVLlDl~MPgmD--G------ 92 (603)
.|||++.|.-... ..|.+.|... +.|.. . ......++. +... .||+|++.+..-+.. -
T Consensus 21 prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~Vvi~~G~ND~~~~~~~~~~~ 97 (200)
T 4h08_A 21 PHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKNT--KFDVIHFNNGLHGFDYTEEEYDKS 97 (200)
T ss_dssp CEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHHS--CCSEEEECCCSSCTTSCHHHHHHH
T ss_pred CeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhcC--CCCeEEEEeeeCCCCCCHHHHHHH
Confidence 4899999986542 3355555433 33332 1 122233332 2333 499999977655432 1
Q ss_pred -HHHHHHHHhcccCCCCeEEEEec
Q 007462 93 -FALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 93 -leLLr~Lr~~~~~~~IPVImlSa 115 (603)
-++++.|++. .++++||+++.
T Consensus 98 l~~ii~~l~~~--~p~~~ii~~~~ 119 (200)
T 4h08_A 98 FPKLIKIIRKY--APKAKLIWANT 119 (200)
T ss_dssp HHHHHHHHHHH--CTTCEEEEECC
T ss_pred HHHHHHHHhhh--CCCccEEEecc
Confidence 2355566543 36788888775
No 340
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=30.48 E-value=88 Score=31.38 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=62.7
Q ss_pred CCEEEEEec-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceE-EEEeCCCCCCCHHHHH---HHHHhcccC
Q 007462 31 ALRVLLVEA-DDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDL-ILTEVDLPSISGFALL---TLVMEHEIC 105 (603)
Q Consensus 31 ~lrVLLVDD-D~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDL-VLlDl~MPgmDGleLL---r~Lr~~~~~ 105 (603)
++||.||.- -..-...+..+.. .+.+++.+.+.......+.... +.+ +..| --+++ +.|+.. .
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~-~~~~lvav~d~~~~~~~~~~~~--~~~~~~~~-------~~~ll~~~~~l~~~--~ 70 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKE-VGGVLVASLDPATNVGLVDSFF--PEAEFFTE-------PEAFEAYLEDLRDR--G 70 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHH-TTCEEEEEECSSCCCGGGGGTC--TTCEEESC-------HHHHHHHHHHHHHT--T
T ss_pred ceEEEEECCChHHHHHHHHHHHh-CCCEEEEEEcCCHHHHHHHhhC--CCCceeCC-------HHHHHHHhhhhccc--C
Confidence 478999987 4444445555544 4788776554332222222211 122 2222 22333 333321 1
Q ss_pred CCCeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 106 KNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 106 ~~IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+++-+|+++. ....+.+..|+++|..=|+-||+ +.++...++..+.+.
T Consensus 71 ~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 71 EGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 3455555543 34678889999999999999996 567888777665443
No 341
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=30.44 E-value=3.1e+02 Score=24.95 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=52.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHhcCC-CCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVT-AVPDGLKAWEVLKGRP-RNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~-~A~dg~eALe~L~~~~-~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
..+|.-||-++......+..+...|+ .|. ...+..+.+..+.... ..||+|++|...+ .-..+++.+... ..+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~~-L~p 159 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALKL-SRP 159 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHHT-CCT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHHh-cCC
Confidence 46999999999999999999988776 233 3567777776654321 2499999996533 334566666432 223
Q ss_pred CCeEEEEe
Q 007462 107 NIPVIMMS 114 (603)
Q Consensus 107 ~IPVImlS 114 (603)
.- +|++.
T Consensus 160 gG-~lv~~ 166 (223)
T 3duw_A 160 GT-VIIGD 166 (223)
T ss_dssp TC-EEEEE
T ss_pred Cc-EEEEe
Confidence 33 55554
No 342
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=30.41 E-value=2.9e+02 Score=24.56 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=35.3
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHH
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~ 144 (603)
.++|+.|++. .++++++|+.........+-.+|..+|+.......+..
T Consensus 41 ~~~l~~L~~~----G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k~~~~ 88 (180)
T 1k1e_A 41 GLGIKMLMDA----DIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEKETAC 88 (180)
T ss_dssp HHHHHHHHHT----TCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCHHHHH
T ss_pred HHHHHHHHHC----CCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCcHHHH
Confidence 4778888653 67999999988777766677889988886655554433
No 343
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=30.39 E-value=50 Score=30.80 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=48.2
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEE--EecCCCHHHHHHHHHcCCcEEEeCCC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIM--MSSQDSVSTVYKCMMRGAADYLVKPV 138 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPg--mDGleLLr~Lr~~~~~~~IPVIm--lSa~~d~~~~~~al~~GA~DyL~KP~ 138 (603)
+.+++++.++.....+|+| .+.+|. ..|+++++.|++.. +++||.+ +........+..+.++||+.+++-..
T Consensus 11 ~~~~~~~~~~~~~~~~dii--e~G~p~~~~~g~~~i~~ir~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDII--EVGTPFLIREGVNAIKAIKEKY--PHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEE--EECHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhhcCccEE--EeCcHHHHhccHHHHHHHHHhC--CCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Confidence 5566665555322235543 333353 45789999998642 4678753 23333333488999999998887544
Q ss_pred CH-HHHHHHHHHH
Q 007462 139 RR-NELRNLWQHV 150 (603)
Q Consensus 139 ~~-~eL~~~L~~v 150 (603)
.. +.+..+++.+
T Consensus 87 ~~~~~~~~~~~~~ 99 (211)
T 3f4w_A 87 TDVLTIQSCIRAA 99 (211)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHH
Confidence 32 3344444433
No 344
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=30.31 E-value=3.1e+02 Score=29.59 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=62.2
Q ss_pred CCCEEEEEecC----HHHHHHHHHHHHhC--C-CEEE--EECCHHHHHHHHhcCCCCceEEEEeCCCC------------
Q 007462 30 MALRVLLVEAD----DSTRQIVTALLRKS--S-YRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP------------ 88 (603)
Q Consensus 30 m~lrVLLVDDD----~~~r~lL~~lL~~~--G-y~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~MP------------ 88 (603)
...++|+|+-+ ......+ ..|+.. + ..|+ .+.+.+.|..+++.. .|+|++-+. |
T Consensus 253 ~gv~~l~Vd~~~g~~~~~~~~i-~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aG---ad~I~Vg~~-~g~~~~~r~~~~~ 327 (503)
T 1me8_A 253 AGADVLCIDSSDGFSEWQKITI-GWIREKYGDKVKVGAGNIVDGEGFRYLADAG---ADFIKIGIG-GGSICITREQKGI 327 (503)
T ss_dssp HTCSEEEECCSCCCSHHHHHHH-HHHHHHHGGGSCEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTCCSTTTTCC
T ss_pred hhccceEEecccCcccchhhHH-HHHHHhCCCCceEeeccccCHHHHHHHHHhC---CCeEEeccc-CCcCcccccccCC
Confidence 36788888543 2223333 223322 3 3333 477888888887753 688887431 2
Q ss_pred CCCHHHHHHHHHhccc------CCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 89 SISGFALLTLVMEHEI------CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 89 gmDGleLLr~Lr~~~~------~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..-+.++..+.+... ...+|||.=.+-.....+.+|+.+||+...+-
T Consensus 328 g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG 381 (503)
T 1me8_A 328 GRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLG 381 (503)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 1233455555432210 01589987778889999999999999988764
No 345
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=30.22 E-value=3.6e+02 Score=25.62 Aligned_cols=69 Identities=9% Similarity=0.203 Sum_probs=48.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHhcC---CCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVT-AVPDGLKAWEVLKGR---PRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~-~A~dg~eALe~L~~~---~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
..+|..||-++......+..+...|+ .|. ...+..+.+..+... ...||+||+|...+ +-..+++.+..
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 178 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRLID 178 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHHHH
Confidence 36999999999999999999988876 343 356777776655310 12499999996533 34555666543
No 346
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=30.14 E-value=28 Score=33.43 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=26.6
Q ss_pred hhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 007462 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (603)
Q Consensus 26 fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~ 62 (603)
++..|..+|+|||-.......+...|+..|+++..+.
T Consensus 19 ~~~~~~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~ 55 (218)
T 2vpi_A 19 YFQSMEGAVVILDAGAQYGKVIDRRVRELFVQSEIFP 55 (218)
T ss_dssp ----CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEEC
T ss_pred EEEecCCeEEEEECCCchHHHHHHHHHHCCCEEEEEE
Confidence 4444667999999887777788888998998776554
No 347
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=30.12 E-value=99 Score=31.38 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=23.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~ 62 (603)
.+.++|||+.....-+. +...++..||+|+.+.
T Consensus 9 ~~~~~ili~g~g~~~~~-~~~a~~~~G~~v~~~~ 41 (391)
T 1kjq_A 9 PAATRVMLLGSGELGKE-VAIECQRLGVEVIAVD 41 (391)
T ss_dssp TTCCEEEEESCSHHHHH-HHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEECCCHHHHH-HHHHHHHcCCEEEEEE
Confidence 34579999988765554 4455677899887764
No 348
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=30.02 E-value=1.5e+02 Score=28.54 Aligned_cols=69 Identities=9% Similarity=0.195 Sum_probs=40.1
Q ss_pred cCHHHHH---HHHHHHHhCCCEEEEECCH------HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 39 ADDSTRQ---IVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 39 DD~~~r~---lL~~lL~~~Gy~V~~A~dg------~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
.++.... .+...+++.||.+..+... .+.++.+.... +|-||+--.. .+ -++++.+.. ..+|
T Consensus 23 ~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiI~~~~~--~~-~~~~~~l~~----~~iP 93 (295)
T 3hcw_A 23 LNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRM--VDAFILLYSK--EN-DPIKQMLID----ESMP 93 (295)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTC--CSEEEESCCC--TT-CHHHHHHHH----TTCC
T ss_pred cChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCC--cCEEEEcCcc--cC-hHHHHHHHh----CCCC
Confidence 3454444 4555567789998775422 23456665544 8988874211 11 256666654 3689
Q ss_pred EEEEecC
Q 007462 110 VIMMSSQ 116 (603)
Q Consensus 110 VImlSa~ 116 (603)
||++...
T Consensus 94 vV~i~~~ 100 (295)
T 3hcw_A 94 FIVIGKP 100 (295)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9988653
No 349
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=30.01 E-value=73 Score=29.10 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=41.9
Q ss_pred CCEEEEEecCH-HHHHHHHHHHHhCCC---------EEEEECCHHH---HHHHHhcCCC-CceEEEEeCCCCCCCH----
Q 007462 31 ALRVLLVEADD-STRQIVTALLRKSSY---------RVTAVPDGLK---AWEVLKGRPR-NIDLILTEVDLPSISG---- 92 (603)
Q Consensus 31 ~lrVLLVDDD~-~~r~lL~~lL~~~Gy---------~V~~A~dg~e---ALe~L~~~~~-~pDLVLlDl~MPgmDG---- 92 (603)
..+|++++-+. .....+..++...|+ .+....++.+ .++.++.... .+++||+|--...++.
T Consensus 45 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~ 124 (220)
T 2cvh_A 45 GKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR 124 (220)
T ss_dssp CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence 35788887654 112334444444443 2222334422 3333221111 3999999975555443
Q ss_pred -------HHHHHHHHhcccCCCCeEEEEecC
Q 007462 93 -------FALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 93 -------leLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
.++++.|+......+++||+++..
T Consensus 125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~ 155 (220)
T 2cvh_A 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQV 155 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeE
Confidence 234433433221125778876653
No 350
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=29.96 E-value=1.8e+02 Score=31.19 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=54.4
Q ss_pred hhcCCCEEEEEecCHH---HHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHhcCCCCceEEEEeCCCCCCC--HHH
Q 007462 27 LQRMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEVDLPSIS--GFA 94 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~---dg----~eALe~L~~~~~~pDLVLlDl~MPgmD--Gle 94 (603)
+.+...+|+||+-|+. ....|..+-...|..+.... ++ .++++.+.... +|+||+|.. +.. ..+
T Consensus 124 l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~--~DvVIIDTa--Grl~~d~~ 199 (443)
T 3dm5_A 124 FQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKG--VDIIIVDTA--GRHKEDKA 199 (443)
T ss_dssp HHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTT--CSEEEEECC--CCSSCCHH
T ss_pred HHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCC--CCEEEEECC--CcccchHH
Confidence 3344578888887753 33444444455676666532 32 34566665543 899999963 321 123
Q ss_pred HHHHH---HhcccCCCCeEEEEecCC--CHHHHHHHHH--cCCcEEE-eC
Q 007462 95 LLTLV---MEHEICKNIPVIMMSSQD--SVSTVYKCMM--RGAADYL-VK 136 (603)
Q Consensus 95 LLr~L---r~~~~~~~IPVImlSa~~--d~~~~~~al~--~GA~DyL-~K 136 (603)
++.+| ... ..++..++++.+.. +.....+.+. .++..++ .|
T Consensus 200 lm~el~~i~~~-~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTK 248 (443)
T 3dm5_A 200 LIEEMKQISNV-IHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTK 248 (443)
T ss_dssp HHHHHHHHHHH-HCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEEC
T ss_pred HHHHHHHHHHh-hcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEEC
Confidence 33333 222 22455566665543 2223334444 4556554 55
No 351
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=29.89 E-value=1.4e+02 Score=29.44 Aligned_cols=106 Identities=10% Similarity=0.094 Sum_probs=61.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHH-hCCCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLR-KSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~-~~Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
+++|.||.--..-...+...|. ..+++++.+ . +.+.+-+..+... ... -.|--+++. . .+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~--~~~--------~~~~~~ll~-----~--~D 68 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR--IMP--------FDSIESLAK-----K--CD 68 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT--CCB--------CSCHHHHHT-----T--CS
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCC--------cCCHHHHHh-----c--CC
Confidence 4799999987766653444444 457887753 3 4444434333211 111 112223332 1 23
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+-+|..-.....+.+..|++.|..=|+.||+ +.+++..+++.+.+.
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 69 CIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 3333333344677788999999998899998 567777776655443
No 352
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=29.62 E-value=79 Score=28.96 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=40.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm 90 (603)
|+|||..-.-.+-..|...|...|++|+.+.-..+.+..+... .+.++..|+.-+..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~--~~~~~~~D~~d~~~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGA--TVATLVKEPLVLTE 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCT--TSEEEECCGGGCCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCC--CceEEecccccccH
Confidence 4799999988888888888888899988765444444444332 37888888865553
No 353
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=29.54 E-value=1.2e+02 Score=32.08 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=34.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCE-EEEE-----------------CCHHHHHHHHhcCCCCceEEEEe
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYR-VTAV-----------------PDGLKAWEVLKGRPRNIDLILTE 84 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~~A-----------------~dg~eALe~L~~~~~~pDLVLlD 84 (603)
|.++||||........+...+.+..++. |+++ .|.+..++.++... +|+|+..
T Consensus 20 ~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a~~~~--id~vv~g 90 (442)
T 3lp8_A 20 GSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKEK--IELVVIG 90 (442)
T ss_dssp CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHTT--CCEEEEC
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHHHHhC--CCEEEEC
Confidence 4579999999976665556655554543 3332 14456667777654 9999974
No 354
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=29.50 E-value=2.1e+02 Score=24.55 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=45.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh---cCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK---GRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~---~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
++|.||.| +.+.. -++-.|+++..+.+.+++.+.++ .. ..+.|||+.-.+-. .--+.+..++.. ...
T Consensus 4 mkiaVIgD-~dtv~----GFrLaGi~~~~v~~~ee~~~~~~~l~~~-~digIIlIte~~a~-~i~~~i~~~~~~---~~~ 73 (109)
T 2d00_A 4 VRMAVIAD-PETAQ----GFRLAGLEGYGASSAEEAQSLLETLVER-GGYALVAVDEALLP-DPERAVERLMRG---RDL 73 (109)
T ss_dssp CCEEEEEC-HHHHH----HHHHTTSEEEECSSHHHHHHHHHHHHHH-CCCSEEEEETTTCS-CHHHHHHHHTTC---CCC
T ss_pred cEEEEEeC-HHHHH----HHHHcCCeEEEeCCHHHHHHHHHHHhhC-CCeEEEEEeHHHHH-hhHHHHHHHHhC---CCC
Confidence 58899999 44332 23456888888888887755443 22 24889999876554 233445555422 346
Q ss_pred eEEEEec
Q 007462 109 PVIMMSS 115 (603)
Q Consensus 109 PVImlSa 115 (603)
|+|+.-.
T Consensus 74 P~Il~IP 80 (109)
T 2d00_A 74 PVLLPIA 80 (109)
T ss_dssp CEEEEES
T ss_pred eEEEEEC
Confidence 7776543
No 355
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=29.42 E-value=1.9e+02 Score=28.24 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=53.3
Q ss_pred CEEEEE-ecCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLV-EADDST---RQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLV-DDD~~~---r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+| +|+..- ...++..|+..|..++. . .+...++..+.... ||+||+-.. ..+...+++.++
T Consensus 140 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~--~d~i~~~~~--~~~a~~~~~~~~ 215 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEA--PQAIYLAMA--YEDAAPFLRALR 215 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHC--CSEEEEESC--HHHHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcC--CCEEEEccC--chHHHHHHHHHH
Confidence 466665 344433 34455667778887653 2 36677777776544 899998642 225677888887
Q ss_pred hcccCCCCeEEEEecCCCHHHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVSTVY 123 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~~ 123 (603)
+.. -.+|||............
T Consensus 216 ~~g--~~~p~~~~~~~~~~~~~~ 236 (358)
T 3hut_A 216 ARG--SALPVYGSSALYSPKFID 236 (358)
T ss_dssp HTT--CCCCEEECGGGCSHHHHH
T ss_pred HcC--CCCcEEecCcccCHHHHH
Confidence 655 368887666555555443
No 356
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=29.30 E-value=1.6e+02 Score=30.66 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=43.3
Q ss_pred CHHHHHHHHhcCCCCceEEEEe-----CCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecCC-C-----HHHHHHHH
Q 007462 63 DGLKAWEVLKGRPRNIDLILTE-----VDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQD-S-----VSTVYKCM 126 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlD-----l~MP-----gmDGleLLr~Lr~~~~~~~IPVImlSa~~-d-----~~~~~~al 126 (603)
+...|++++.... +.+++||. +.-+ ++..+..++++ .++|||+.+++. . ......|.
T Consensus 228 ei~~Ave~i~~~G-N~~viLceRG~~typ~~~~~~vdl~ai~~lk~~------~~lpVi~dssHs~G~~~~v~~~a~AAv 300 (350)
T 1vr6_A 228 EFLLSAEYIANSG-NTKIILCERGIRTFEKATRNTLDISAVPIIRKE------SHLPILVDPSHSGGRRDLVIPLSRAAI 300 (350)
T ss_dssp HHHHHHHHHHHTT-CCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHH------BSSCEEECHHHHHCSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHh------hCCCEEEeCCCCCcccchHHHHHHHHH
Confidence 3445677676543 47999984 2122 34455555543 267988877764 2 56677788
Q ss_pred HcCCcEEE-eCCC
Q 007462 127 MRGAADYL-VKPV 138 (603)
Q Consensus 127 ~~GA~DyL-~KP~ 138 (603)
.+||++.+ -|-+
T Consensus 301 A~GA~Gl~IE~H~ 313 (350)
T 1vr6_A 301 AVGAHGIIVEVHP 313 (350)
T ss_dssp HHTCSEEEEEBCS
T ss_pred HhCCCEEEEEecC
Confidence 99999765 4543
No 357
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=29.29 E-value=2.3e+02 Score=28.63 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe-CCC
Q 007462 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-KPV 138 (603)
Q Consensus 90 mDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~-KP~ 138 (603)
...++++.++++. ..++|||...+..+...+.+++.+||+...+ .|+
T Consensus 241 ~~~~~~l~~v~~~--~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~ 288 (332)
T 1vcf_A 241 IPTARAILEVREV--LPHLPLVASGGVYTGTDGAKALALGADLLAVARPL 288 (332)
T ss_dssp CBHHHHHHHHHHH--CSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGG
T ss_pred ccHHHHHHHHHHh--cCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHH
Confidence 3567777877653 2369999999999999999999999988754 454
No 358
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=29.26 E-value=82 Score=32.23 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=68.1
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCCC----CC-CCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 47 VTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL----PS-ISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 47 L~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~M----Pg-mDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
.-..|+..|+.+.. +.+|-..+..|...+ +|.|=+|-.+ .. .....+++.|-.....-++.|| .-+..+.
T Consensus 217 ~l~~Lr~~G~~ialDDFGtG~ssl~~L~~lp--~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~vv-AEGVEt~ 293 (340)
T 4hjf_A 217 ILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVENA 293 (340)
T ss_dssp HHHHHHHHTCEEEEECTTSSSCGGGTGGGSC--CSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEEE-EECCCSH
T ss_pred HHHHHHHcCCCccccCCCCCcchHHHHHhCC--CChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEEE-EEeCCcH
Confidence 33445677887655 667777778887755 8999888532 22 2234555555332211244544 5677888
Q ss_pred HHHHHHHHcCCcE----EEeCCCCHHHHHHHHHHHHH
Q 007462 120 STVYKCMMRGAAD----YLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 120 ~~~~~al~~GA~D----yL~KP~~~~eL~~~L~~v~r 152 (603)
+.+..+..+|++. |+.||+..+++...|++...
T Consensus 294 ~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~~ 330 (340)
T 4hjf_A 294 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAYV 330 (340)
T ss_dssp HHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEeecCccccCCCHHHHHHHHHhccC
Confidence 8888899999864 36899999999988876543
No 359
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=29.21 E-value=1.2e+02 Score=30.80 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 116 QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
....+.+..|+++|..=|+-||+ +.++...+++.+.+
T Consensus 94 ~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~ 132 (383)
T 3oqb_A 94 QARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANS 132 (383)
T ss_dssp SSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 45788899999999999999998 66777777765543
No 360
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=29.20 E-value=1.9e+02 Score=27.21 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCC-C-CHHHHHHHHHhcccCCCCeEEEE
Q 007462 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 42 ~~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPg-m-DGleLLr~Lr~~~~~~~IPVIml 113 (603)
.+...+...+++.||.+..+. +.. +.++.+.... +|-||+--..+. . ...++++.+.. ..+|||++
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~ 105 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQH--IDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCC--CCEEEEecccccccCCcHHHHHHHHh----cCCCEEEE
Confidence 345556666778899877653 233 3455555443 898887432221 1 23467777754 36899988
Q ss_pred ecC
Q 007462 114 SSQ 116 (603)
Q Consensus 114 Sa~ 116 (603)
...
T Consensus 106 ~~~ 108 (298)
T 3tb6_A 106 NAS 108 (298)
T ss_dssp SSC
T ss_pred ecC
Confidence 654
No 361
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=29.16 E-value=1.2e+02 Score=31.00 Aligned_cols=57 Identities=7% Similarity=-0.076 Sum_probs=45.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.+||.+|..- ..-..++++++++.- ...+||++=-+-.+.+.+.+++.+||+..++-
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 6899999754 333468999997642 12789998888899999999999999999876
No 362
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=29.15 E-value=1.1e+02 Score=32.55 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+.++.+.+.. +|+|++|.....-. -.++++++++.. .+|||+ ....+.+.+..+.++||+.+.+
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~---~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcC---CCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence 44444444433 89999997643322 267888886532 678875 2235688889999999999887
No 363
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=29.08 E-value=2.5e+02 Score=27.17 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC----
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK---- 136 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MPgm-DG--leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K---- 136 (603)
..+.++.+.... --.+|++|+..-|+ .| +++++.|.+. .+++|||.--+..+.+.+.+. ..++++.++-
T Consensus 153 ~~~~~~~~~~~g-~~eil~t~Id~DGt~~G~d~~l~~~l~~~--~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~ 228 (243)
T 4gj1_A 153 LMEVLDFYSNKG-LKHILCTDISKDGTMQGVNVRLYKLIHEI--FPNICIQASGGVASLKDLENL-KGICSGVIVGKALL 228 (243)
T ss_dssp HHHHHHHHHTTT-CCEEEEEETTC-----CCCHHHHHHHHHH--CTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHH
T ss_pred HHHHHHHHhhcC-CcEEEeeeecccccccCCCHHHHHHHHHh--cCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHHH
Confidence 455555555432 24799999976663 34 5778888653 357999988888888887664 5667887753
Q ss_pred --CCCHHHHHHHH
Q 007462 137 --PVRRNELRNLW 147 (603)
Q Consensus 137 --P~~~~eL~~~L 147 (603)
-++.+|++..|
T Consensus 229 ~g~i~l~ea~~~l 241 (243)
T 4gj1_A 229 DGVFSVEEGIRCL 241 (243)
T ss_dssp TTSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHh
Confidence 45555555443
No 364
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=29.04 E-value=3.6e+02 Score=28.56 Aligned_cols=57 Identities=28% Similarity=0.238 Sum_probs=35.0
Q ss_pred hhcCCCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHhcCCCCceEEEEeC
Q 007462 27 LQRMALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 27 l~~m~lrVLLVDDD~---~~r~lL~~lL~~~Gy~V~~A~---dg----~eALe~L~~~~~~pDLVLlDl 85 (603)
+.....+|+|++-|. .....|..+-...|+.++... ++ .++++.++.. .+|+||+|.
T Consensus 122 l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~--~~DvVIIDT 188 (425)
T 2ffh_A 122 YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE--ARDLILVDT 188 (425)
T ss_dssp HHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred HHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 444467999999884 333444444455677777653 22 2344554333 389999996
No 365
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=28.89 E-value=1.1e+02 Score=30.44 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCEEEEEecCH--------HHHHHHHHHHHhCCCEEEEE
Q 007462 31 ALRVLLVEADD--------STRQIVTALLRKSSYRVTAV 61 (603)
Q Consensus 31 ~lrVLLVDDD~--------~~r~lL~~lL~~~Gy~V~~A 61 (603)
+|+||+|-... .....+...|.+.|++|..+
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 58 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 46999998642 34445666677779987653
No 366
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=28.87 E-value=2e+02 Score=28.92 Aligned_cols=105 Identities=11% Similarity=0.149 Sum_probs=59.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~-~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||.||.--..-+......|. ..+++++.+.+...... +... +.+-+. .|- +.|-.. +++-
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~--~~~~--~~~~~~------~~~----~~ll~~---~~vD 69 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKV--HADW--PAIPVV------SDP----QMLFND---PSID 69 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHH--HTTC--SSCCEE------SCH----HHHHHC---SSCC
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHH--HhhC--CCCceE------CCH----HHHhcC---CCCC
Confidence 4799999987766653344444 44788776543322211 1111 121111 122 222222 2344
Q ss_pred EEEEec--CCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHH
Q 007462 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKP--VRRNELRNLWQHVWR 152 (603)
Q Consensus 110 VImlSa--~~d~~~~~~al~~GA~DyL~KP--~~~~eL~~~L~~v~r 152 (603)
+|+++. ....+.+..|+++|..=|+-|| .+.++...+++.+.+
T Consensus 70 ~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 70 LIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 444443 3467788899999999999999 567787777765543
No 367
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=28.86 E-value=67 Score=32.21 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=59.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD--GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~d--g~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++|.||.--..-...+..+....+++++.+.+ .+.+-+..+... ..-+.. |- +.+-.. +++
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~--~~~~~~-------~~----~~ll~~---~~~ 68 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYH--LPKAYD-------KL----EDMLAD---ESI 68 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCC--CSCEES-------CH----HHHHTC---TTC
T ss_pred ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcC--CCcccC-------CH----HHHhcC---CCC
Confidence 479999998766666666665555677765432 222322222211 111221 22 222221 234
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
-+|+++. ....+.+..|++.|..=|+.||+ +.+++..+++.+.+
T Consensus 69 D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 116 (329)
T 3evn_A 69 DVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAES 116 (329)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHH
Confidence 4444443 34677788999999999999997 56777777665543
No 368
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=28.81 E-value=1.6e+02 Score=27.23 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCEEEEEecC--HHHHHHHHHHHHhCCCEEEE-EC---CHHHHHHHHhcCCCCceEE-EEeCCC---CCCCHH-HHHHHH
Q 007462 31 ALRVLLVEAD--DSTRQIVTALLRKSSYRVTA-VP---DGLKAWEVLKGRPRNIDLI-LTEVDL---PSISGF-ALLTLV 99 (603)
Q Consensus 31 ~lrVLLVDDD--~~~r~lL~~lL~~~Gy~V~~-A~---dg~eALe~L~~~~~~pDLV-LlDl~M---PgmDGl-eLLr~L 99 (603)
....+.|... ......+.+.+++.|..+.. +. +..+.++.+.... .|+| +.=... ++.+.. +.++++
T Consensus 77 Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~g--~d~v~~~~~~~~~~~g~~~~~~~i~~~ 154 (207)
T 3ajx_A 77 GADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALG--AKFVEMHAGLDEQAKPGFDLNGLLAAG 154 (207)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHTT--CSEEEEECCHHHHTSTTCCTHHHHHHH
T ss_pred CCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHhC--CCEEEEEecccccccCCCchHHHHHHh
Confidence 3444554432 23333444555555766533 32 5566444444333 7888 542211 232222 555555
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 100 r~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+.. ++||++.-+-. .+.+.++++.||+.+++
T Consensus 155 ~~~----~~pi~v~GGI~-~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 155 EKA----RVPFSVAGGVK-VATIPAVQKAGAEVAVA 185 (207)
T ss_dssp HHH----TSCEEEESSCC-GGGHHHHHHTTCSEEEE
T ss_pred hCC----CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 431 56777655544 67788889999998864
No 369
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=28.54 E-value=3.1e+02 Score=25.09 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHhcCC--CCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVT-AVPDGLKAWEVLKGRP--RNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~-~A~dg~eALe~L~~~~--~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
..+|..||-++......+..+...|+ .+. ...+..+.+..+.... ..+|+|++|.. ..+-..+++.+.
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~ 166 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCL 166 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHH
Confidence 46999999999999999999987765 333 3567777665554211 24999999864 233345555554
No 370
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=28.53 E-value=1.6e+02 Score=27.22 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=41.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHhcC--CCCceEEEEeCCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VT-AVPDGLKAWEVLKGR--PRNIDLILTEVDLPS 89 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~-~A~dg~eALe~L~~~--~~~pDLVLlDl~MPg 89 (603)
..+|.-||-++......+..+...|.. |. ...+..+.+..+... ...||+||+|.....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~ 146 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR 146 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCccc
Confidence 469999999999999999999877752 43 356776666544320 024999999975443
No 371
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=28.46 E-value=1.1e+02 Score=30.33 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=48.5
Q ss_pred EEEEE-ecCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 33 RVLLV-EADDS---TRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 33 rVLLV-DDD~~---~r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
+|.|| +|+.. ....++..|+..|..++. . .+....+..+.... ||+||+.. .+.+...+++.+++
T Consensus 143 ~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~~ 218 (364)
T 3lop_A 143 RIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAAD--VQAIFLGA--TAEPAAQFVRQYRA 218 (364)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSC--CSEEEEES--CHHHHHHHHHHHHH
T ss_pred eEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCC--CCEEEEec--CcHHHHHHHHHHHH
Confidence 55555 44443 334556667777875432 2 36677777777654 89999853 23457778888876
Q ss_pred cccCCCCeEEEEecCCC
Q 007462 102 HEICKNIPVIMMSSQDS 118 (603)
Q Consensus 102 ~~~~~~IPVImlSa~~d 118 (603)
.. -.+|||.......
T Consensus 219 ~g--~~~~~i~~~~~~~ 233 (364)
T 3lop_A 219 RG--GEAQLLGLSSIDP 233 (364)
T ss_dssp TT--CCCEEEECTTSCH
T ss_pred cC--CCCeEEEeccCCh
Confidence 54 3578664444333
No 372
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=28.45 E-value=1.5e+02 Score=30.86 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHhcCCCCceEEEEeCC----CC-CCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 43 TRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVD----LP-SISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~--~A~dg~eALe~L~~~~~~pDLVLlDl~----MP-gmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
..+.++.+-+..+.-|+ .+.+.++|..+++.. .|.|++.-. +. +..-++++.+++..- .+|||.-.+
T Consensus 213 ~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~aG---ad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~---~~pVia~GG 286 (380)
T 1p4c_A 213 NWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEG---ADGVILSNHGGRQLDCAISPMEVLAQSVAKT---GKPVLIDSG 286 (380)
T ss_dssp CHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHTT---CSEEEECCGGGTSCTTCCCGGGTHHHHHHHH---CSCEEECSS
T ss_pred cHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcC---CCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc---CCeEEEECC
Confidence 34566666666666554 467888888877643 788877321 00 112366777776532 459998888
Q ss_pred CCCHHHHHHHHHcCCcEEEeC
Q 007462 116 QDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (603)
..+...+.+++.+||+..++-
T Consensus 287 I~~~~dv~kal~~GAdaV~iG 307 (380)
T 1p4c_A 287 FRRGSDIVKALALGAEAVLLG 307 (380)
T ss_dssp CCSHHHHHHHHHTTCSCEEES
T ss_pred CCCHHHHHHHHHhCCcHhheh
Confidence 889999999999999998754
No 373
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=28.42 E-value=18 Score=33.98 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=12.5
Q ss_pred hhhcCCCEEEEEecCHH
Q 007462 26 FLQRMALRVLLVEADDS 42 (603)
Q Consensus 26 fl~~m~lrVLLVDDD~~ 42 (603)
.+.+...+||+||-|+.
T Consensus 26 ~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 26 ALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp HHHHTTCCEEEEECCTT
T ss_pred HHHhcCCeEEEEeCCCC
Confidence 34455679999999873
No 374
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=28.35 E-value=2.2e+02 Score=27.05 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=51.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
..+|..||-++......+..+...|+. |. ...+..+.+..+... ..||+|++|...+ +-..+++.+... ..+.
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~-~~fD~V~~d~~~~--~~~~~l~~~~~~-LkpG 163 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGEC-PAFDLIFIDADKP--NNPHYLRWALRY-SRPG 163 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSC-CCCSEEEECSCGG--GHHHHHHHHHHT-CCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCC-CCeEEEEECCchH--HHHHHHHHHHHh-cCCC
Confidence 469999999999999999999887763 43 356766655544221 2599999997432 334566666432 2233
Q ss_pred CeEEEEec
Q 007462 108 IPVIMMSS 115 (603)
Q Consensus 108 IPVImlSa 115 (603)
-+|++..
T Consensus 164 -G~lv~~~ 170 (248)
T 3tfw_A 164 -TLIIGDN 170 (248)
T ss_dssp -CEEEEEC
T ss_pred -eEEEEeC
Confidence 3555543
No 375
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=28.25 E-value=1.1e+02 Score=30.74 Aligned_cols=113 Identities=10% Similarity=-0.014 Sum_probs=62.8
Q ss_pred CCEEEEEec-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH---HHHHhcccCC
Q 007462 31 ALRVLLVEA-DDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL---TLVMEHEICK 106 (603)
Q Consensus 31 ~lrVLLVDD-D~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL---r~Lr~~~~~~ 106 (603)
++||.||.- -..-...+..+.. .+.+++.+.+.......+.... +.+-+.+ |--+++ +.|... ..+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~-~~~~lvav~d~~~~~~~~~~~~--~~~~~~~------~~~~ll~~~~~l~~~-~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKD-TGNCLVSAYDINDSVGIIDSIS--PQSEFFT------EFEFFLDHASNLKRD-SAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHH-TTCEEEEEECSSCCCGGGGGTC--TTCEEES------SHHHHHHHHHHHTTS-TTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHh-CCCEEEEEEcCCHHHHHHHhhC--CCCcEEC------CHHHHHHhhhhhhhc-cCC
Confidence 478999987 4444445555444 4788777654332222222211 2222211 222333 233210 113
Q ss_pred CCeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 107 NIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 107 ~IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
++-+|+++. ....+.+..|+++|..=|+-||+ +.++...+++.+.+.
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 455555544 34678889999999999999995 677887777655443
No 376
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=28.09 E-value=2.6e+02 Score=28.68 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh--------CCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK--------SSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~--------~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
++||-||.-=..-+..+..+.+. .+++++.+. +.+.|-+..+... ..-+..|+ +.|-
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~--~~~~y~d~-----------~~ll 92 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLG--AEKAYGDW-----------RELV 92 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-----------HHHH
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcC--CCeEECCH-----------HHHh
Confidence 38999999766555545444332 245666543 4444444444322 22344332 2332
Q ss_pred hcccCCCCeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 101 EHEICKNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 101 ~~~~~~~IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
.. +++-+|+++. ....+.+..|+++|..=|+-||+ +.++...+++.+-+
T Consensus 93 ~~---~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 145 (412)
T 4gqa_A 93 ND---PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARR 145 (412)
T ss_dssp HC---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHH
T ss_pred cC---CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHH
Confidence 22 2444444443 34678899999999999999997 56777777765543
No 377
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=28.09 E-value=4e+02 Score=27.70 Aligned_cols=88 Identities=11% Similarity=-0.102 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHhcCCCCceEEEEeCCCCCC---------------------------
Q 007462 43 TRQIVTALLRKSSYRVTA--V---PDGLKAWEVLKGRPRNIDLILTEVDLPSI--------------------------- 90 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~--A---~dg~eALe~L~~~~~~pDLVLlDl~MPgm--------------------------- 90 (603)
..+.|+.+.+..+.-|+. + -+.+.|..+.+. . +|.|.+.-. .+.
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~a-G--ad~I~V~g~-GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~ 250 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSY-G--IKNFDTSGQ-GGTNWIAIEMIRDIRRGNWKAESAKNFLDW 250 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHT-T--CCEEECCCB-TSBCHHHHHHHHHHHTTCTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhC-C--CCEEEEeCC-CCCcccchhhhhcccccccchhhccccccc
Confidence 455666666656655544 2 466777666653 2 788887533 332
Q ss_pred --CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 91 --SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 91 --DGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.....+..++.. .+++|||.-.+..+...+.+++.+||+.+.+-
T Consensus 251 g~pt~~~l~~v~~~--~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig 296 (368)
T 3vkj_A 251 GVPTAASIMEVRYS--VPDSFLVGSGGIRSGLDAAKAIALGADIAGMA 296 (368)
T ss_dssp SCBHHHHHHHHHHH--STTCEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred cccHHHHHHHHHHH--cCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 122344455432 24699999889899999999999999998764
No 378
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=28.05 E-value=2.6e+02 Score=28.20 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=58.0
Q ss_pred EEEEecCHHH----HHHHHHHHHhCC--CEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 34 VLLVEADDST----RQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 34 VLLVDDD~~~----r~lL~~lL~~~G--y~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
|||-|++-.. ...++..-+..+ .-.+.+.+.+++.+.++.. .|+|++|-.-| -+-.+.++.++.. .++
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~aG---aD~I~LDn~~~-~~~~~~v~~l~~~--~~~ 241 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEK---PELILLDNFAV-WQTQTAVQRRDSR--APT 241 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGC---CSEEEEETCCH-HHHHHHHHHHHHH--CTT
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcC---CCEEEECCCCH-HHHHHHHHHhhcc--CCC
Confidence 5666655332 223333333333 2345688999999998853 79999996333 2222344444432 134
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+ .|..|+--..+.+......|++.|.+
T Consensus 242 v-~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 242 V-MLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp C-EEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred e-EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 4 56677777888888889999887764
No 379
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.76 E-value=1.3e+02 Score=29.88 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
+...+...+...||.+..+. +.. +.++.+.... +|-||+--. ..+ -+.++.+.. ..+|||++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiI~~~~--~~~-~~~~~~l~~----~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRR--PEAMVLSYD--GHT-EQTIRLLQR----ASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEEECS--CCC-HHHHHHHHH----CCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCC--CCC-HHHHHHHHh----CCCCEEEEC
Confidence 34455566778899877653 232 3455555544 887776321 122 356666654 368999884
No 380
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=27.75 E-value=1.1e+02 Score=31.00 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=47.4
Q ss_pred ceEEEE-eCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 78 IDLILT-EVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 78 pDLVLl-Dl~MPgmDG-leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
.|.|++ |-.+--..| -+.++++++. .+..+|.+ ..++.+.+.+|+.+||+-.++..+++++|+..++.+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~--~~~~~IeV--Ev~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKL--DSNKVVEV--EVTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHH--CTTSCEEE--EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhh--CCCCcEEE--EeCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 455555 433222222 3566677654 35678776 445678889999999999999999999999888765
No 381
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=27.64 E-value=1.4e+02 Score=27.37 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=45.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCC---EEEE-ECCHHHHHHHHhcCCCC-ceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSY---RVTA-VPDGLKAWEVLKGRPRN-IDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy---~V~~-A~dg~eALe~L~~~~~~-pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
..+|.-||-++......+..+...|+ .+.. ..|..+.+..+ .... ||+|++|......+--++++.+..
T Consensus 76 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~I~~~~~~~~~~~~~~l~~~~~ 149 (201)
T 2ift_A 76 AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP--QNQPHFDVVFLDPPFHFNLAEQAISLLCE 149 (201)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC--CSSCCEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh--ccCCCCCEEEECCCCCCccHHHHHHHHHh
Confidence 35899999999999999999987775 3443 34554432211 1246 899999865333344567777743
No 382
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=27.50 E-value=1.8e+02 Score=31.43 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 64 GLKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MPgmDG-leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
..+.++.+.+.. +|+|.+|........ +++++.|++.- +++|||+-. ....+.+..+.++||+.+.+
T Consensus 256 ~~~~a~~~~~aG--~d~v~i~~~~G~~~~~~~~i~~i~~~~--~~~pvi~~~-v~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQAG--VDVIVLDSSQGNSVYQIAMVHYIKQKY--PHLQVIGGN-VVTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHTT--CSEEEECCSCCCSHHHHHHHHHHHHHC--TTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHcC--CCEEEeeccCCcchhHHHHHHHHHHhC--CCCceEecc-cchHHHHHHHHHcCCCEEEE
Confidence 344444444433 899999887644433 58899997642 578988632 25678888999999988866
No 383
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=27.49 E-value=1e+02 Score=31.00 Aligned_cols=107 Identities=10% Similarity=0.084 Sum_probs=69.9
Q ss_pred CCEEEEEecCHH-----HHHHHHHHHHhCCCE--------EEEE---CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHH
Q 007462 31 ALRVLLVEADDS-----TRQIVTALLRKSSYR--------VTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFA 94 (603)
Q Consensus 31 ~lrVLLVDDD~~-----~r~lL~~lL~~~Gy~--------V~~A---~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGle 94 (603)
..+++||.+.+. ....+..++...|.. ++.. -+.++..+++.. .|++|+--. .+.-|+-
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~ 289 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLC 289 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcH
Confidence 467888876543 346666766666653 2322 246677777764 588887332 2334677
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCc---------------EE--EeCCCCHHHHHHHHHHHHH
Q 007462 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA---------------DY--LVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 95 LLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~---------------Dy--L~KP~~~~eL~~~L~~v~r 152 (603)
+++.+. ..+|||... .....+.+..|.. ++ ++.|-+.++|...| .++.
T Consensus 290 ~lEAma-----~G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 290 SAEGAV-----LGKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHHT-----TTCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHHH-----cCCCEEEcC----CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 888773 367888632 2344556666666 78 99999999999999 8764
No 384
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=27.27 E-value=80 Score=29.91 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=45.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE---EEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR---VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~---V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
..+|..||-++......+..+...|+. |.. ..+..+.+..+.. ..||+||+|...+. -.++++.+.
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~~--~~~~l~~~~ 150 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPMD--LKALVDAAW 150 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTTT--HHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHHH--HHHHHHHHH
Confidence 369999999999999999999988764 544 3465555443322 34999999975443 334555554
No 385
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=27.26 E-value=27 Score=33.23 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=12.6
Q ss_pred hhhcCCCEEEEEecCH
Q 007462 26 FLQRMALRVLLVEADD 41 (603)
Q Consensus 26 fl~~m~lrVLLVDDD~ 41 (603)
.+.+...+||+||-|+
T Consensus 26 ~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 26 GLAQKGKKTVVIDFAI 41 (260)
T ss_dssp HHHHTTCCEEEEECCC
T ss_pred HHHhCCCcEEEEECCC
Confidence 3455678999999987
No 386
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=27.15 E-value=2.9e+02 Score=26.25 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCEEEEEecC------HHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH-----------
Q 007462 31 ALRVLLVEAD------DSTRQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG----------- 92 (603)
Q Consensus 31 ~lrVLLVDDD------~~~r~lL~~lL~~~Gy~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG----------- 92 (603)
....++|.+. ...+..+... ...|..+ +++.+..++..+ ... ..++|=..-...-..|
T Consensus 82 Gad~Vll~~ser~l~~~e~~~~~~~a-~~~Gl~~iv~v~~~~e~~~~-~~~--~~~~i~~~~~~~iGtG~~~~t~~~~~~ 157 (219)
T 2h6r_A 82 GCKGTLINHSEKRMLLADIEAVINKC-KNLGLETIVCTNNINTSKAV-AAL--SPDCIAVEPPELIGTGIPVSKANPEVV 157 (219)
T ss_dssp TCCEEEESBTTBCCBHHHHHHHHHHH-HHHTCEEEEEESSSHHHHHH-TTT--CCSEEEECCCC--------------CS
T ss_pred CCCEEEECCccccCCHHHHHHHHHHH-HHCCCeEEEEeCCchHHHHH-HhC--CCCEEEEEeccccccCCCCccCCHHHH
Confidence 3455555442 2334444433 4558864 456666665333 332 2566655443320022
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
-++++.++... .++|||.-.+-...+.+..+...|++++|+-
T Consensus 158 ~~~~~~ir~~~--~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVG 199 (219)
T 2h6r_A 158 EGTVRAVKEIN--KDVKVLCGAGISKGEDVKAALDLGAEGVLLA 199 (219)
T ss_dssp HHHHHHHHHHC--TTCEEEECSSCCSHHHHHHHHTTTCCCEEES
T ss_pred HHHHHHHHhcc--CCCeEEEEeCcCcHHHHHHHhhCCCCEEEEc
Confidence 23444554432 3789998888888899988999999999864
No 387
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=27.11 E-value=62 Score=32.75 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCEEEEEecCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTR-QIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r-~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||.||.--..-+ ..+..+....+++++.+.+.... . +.+-.. .|--++|.. . +++-
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~-------~--~g~~~~------~~~~~ll~~---~---~~vD 83 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT-------V--EGVNSY------TTIEAMLDA---E---PSID 83 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC-------C--TTSEEE------SSHHHHHHH---C---TTCC
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh-------h--cCCCcc------CCHHHHHhC---C---CCCC
Confidence 37999999887666 46666665567887776543311 1 221111 122233332 0 2333
Q ss_pred EEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+|+++. ....+.+.+|+++|..=|+-||+ +.+++..+++.+.+.
T Consensus 84 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~ 131 (330)
T 4ew6_A 84 AVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQ 131 (330)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 444433 34677788999999999999997 677877777655443
No 388
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=27.05 E-value=1.3e+02 Score=27.95 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=43.4
Q ss_pred hccCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHhc
Q 007462 14 MNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKS---SYRVTAVPDGLKAWEVLKG 73 (603)
Q Consensus 14 ~~~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~---Gy~V~~A~dg~eALe~L~~ 73 (603)
+++.+-...|-+.+.-- +|+||+|+-..-.+.+.+|... |..+.. -+.++|++.+..
T Consensus 13 LIHGQV~t~W~~~~~~~--~IiVvnD~vA~D~~~k~~lk~a~P~gvk~~i-~sve~ai~~~~~ 72 (163)
T 1ble_A 13 FIHGQILTRWIKVHAAD--RIIVVSDDIAQDEMRKTLILSVAPSNVKASA-VSVSKMAKAFHS 72 (163)
T ss_dssp CSCTTHHHHHHHHHTCS--EEEEECHHHHHCHHHHHHHHTSSCTTSEEEE-ECHHHHHHHHHC
T ss_pred ccchhheeeeccccCCC--EEEEeCccccCCHHHHHHHHhhCCCCCeEEE-EEHHHHHHHHhc
Confidence 44666778999997554 9999999988888888888743 666554 467888888875
No 389
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=26.99 E-value=4.5e+02 Score=25.61 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=44.9
Q ss_pred CEEEEEecCHHHHHHHHHHHH-hCCCEEEEECCHHHHH-HHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 32 LRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAW-EVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~-~~Gy~V~~A~dg~eAL-e~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
+||+|+--.-.+-..+...+. ..+++++.+.+..+-+ +.+. . .+| |++|+.-|. ...+.+....++ .+|
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~-~--~~D-vvIDfT~p~-a~~~~~~~a~~~----g~~ 71 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD-G--NTE-VVIDFTHPD-VVMGNLEFLIDN----GIH 71 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH-T--TCC-EEEECSCTT-THHHHHHHHHHT----TCE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc-c--CCc-EEEEccChH-HHHHHHHHHHHc----CCC
Confidence 478888876666666666665 4589887653221111 2222 2 278 777998776 346666665443 568
Q ss_pred EEEEec
Q 007462 110 VIMMSS 115 (603)
Q Consensus 110 VImlSa 115 (603)
+|+-|.
T Consensus 72 ~VigTT 77 (245)
T 1p9l_A 72 AVVGTT 77 (245)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 777553
No 390
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=26.84 E-value=2e+02 Score=29.53 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=58.0
Q ss_pred CCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLV-DDD~~~r~lL~~lL~~~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
.++|+++ .+++..++.+..++... -.|..+. ...+-..++.. -|+||++- + |+. ++. ....
T Consensus 263 ~~~~v~~~g~~~~~~~~l~~~~~~~-~~v~~~~~lg~~~~~~l~~~----ad~vv~~S---G--g~~-~EA-----~a~G 326 (396)
T 3dzc_A 263 ECQILYPVHLNPNVREPVNKLLKGV-SNIVLIEPQQYLPFVYLMDR----AHIILTDS---G--GIQ-EEA-----PSLG 326 (396)
T ss_dssp TEEEEEECCBCHHHHHHHHHHTTTC-TTEEEECCCCHHHHHHHHHH----CSEEEESC---S--GGG-TTG-----GGGT
T ss_pred CceEEEEeCCChHHHHHHHHHHcCC-CCEEEeCCCCHHHHHHHHHh----cCEEEECC---c--cHH-HHH-----HHcC
Confidence 3566664 55666677777665322 1344332 33455556553 57888874 2 322 222 2246
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+|+|++-...... +..+.|+ .+++.+ +.++|...+..++.
T Consensus 327 ~PvV~~~~~~~~~---e~v~~G~-~~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 327 KPVLVMRETTERP---EAVAAGT-VKLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp CCEEECCSSCSCH---HHHHHTS-EEECTT-CHHHHHHHHHHHHH
T ss_pred CCEEEccCCCcch---HHHHcCc-eEEcCC-CHHHHHHHHHHHHc
Confidence 8999753333322 3456676 477765 89999988888764
No 391
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=26.77 E-value=1.4e+02 Score=30.53 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=59.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh-CCCEEEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~ 107 (603)
+++|.||.--..-+......|.. .+++++.+. +.+.+- +... ..-+..| ++.|-.. ++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~~--~~~~~~~-----------~~~ll~~---~~ 67 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK---RDLP--DVTVIAS-----------PEAAVQH---PD 67 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---HHCT--TSEEESC-----------HHHHHTC---TT
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---hhCC--CCcEECC-----------HHHHhcC---CC
Confidence 47999999876655534444544 478877654 333322 1111 1112222 2233222 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 108 IPVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
+-+|+++. ....+.+..|+++|..=|+-||+ +.++...+++.+.+
T Consensus 68 ~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 116 (364)
T 3e82_A 68 VDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEE 116 (364)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHH
Confidence 44444443 34677888999999999999997 66777777665543
No 392
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=26.77 E-value=1.5e+02 Score=30.06 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=61.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD-GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~d-g~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
+++|.||.--..-+..+..+....+++++.+.+ -.+..+..+. +.+-.. .|--+++. . +++-
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~~------~~~~~ll~----~---~~~D 67 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQ----KGLKIY------ESYEAVLA----D---EKVD 67 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHT----TTCCBC------SCHHHHHH----C---TTCC
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHh----cCCcee------CCHHHHhc----C---CCCC
Confidence 479999998776665665554445788776432 2333344432 222111 12223332 1 2334
Q ss_pred EEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+|+++. ....+.+..|++.|..=|+-||+ +.++...+++.+.+.
T Consensus 68 ~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (359)
T 3e18_A 68 AVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRV 115 (359)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHh
Confidence 444433 34677888999999999999996 567777777655443
No 393
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=26.66 E-value=1.2e+02 Score=31.36 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=23.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~ 62 (603)
+.++|||+.....-+.++. .+++.||+|+.+.
T Consensus 18 ~~~~ili~g~g~~g~~~~~-a~~~~G~~v~~v~ 49 (433)
T 2dwc_A 18 SAQKILLLGSGELGKEIAI-EAQRLGVEVVAVD 49 (433)
T ss_dssp TCCEEEEESCSHHHHHHHH-HHHHTTCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHH-HHHHCCCEEEEEE
Confidence 4569999998866555544 4557899987754
No 394
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=26.51 E-value=1e+02 Score=26.97 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
..+|..||-++......+..+...|+. +....+..+. +......+|+|++...+.. ..+++.+..
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~D~i~~~~~~~~---~~~l~~~~~ 115 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA---FDDVPDNPDVIFIGGGLTA---PGVFAAAWK 115 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG---GGGCCSCCSEEEECC-TTC---TTHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh---hhccCCCCCEEEECCcccH---HHHHHHHHH
Confidence 578999999999999999998877753 5334454333 3321134999999877665 345555543
No 395
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=26.33 E-value=2.9e+02 Score=27.38 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCEEEEEecCHHHHHHHHHHH-HhCCCEEEEE-CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALL-RKSSYRVTAV-PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL-~~~Gy~V~~A-~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++|.||.--..-+..+..+. ...+++++.+ ..-.+..+.+.... ..+.+..| ++.+-.. +++
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-g~~~~~~~-----------~~~~l~~---~~~ 72 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-GVETTYTN-----------YKDMIDT---ENI 72 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-CCSEEESC-----------HHHHHTT---SCC
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-CCCcccCC-----------HHHHhcC---CCC
Confidence 479999998665555556555 3457876654 43333333333221 12223322 1222221 234
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHH
Q 007462 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHV 150 (603)
Q Consensus 109 PVImlSa--~~d~~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v 150 (603)
-+|+++. ....+.+..|++.|..=++.||+. .++...+++.+
T Consensus 73 D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 73 DAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred CEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 4444443 345677888999998888899964 66766665544
No 396
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=26.32 E-value=1.2e+02 Score=31.65 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=44.6
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC-------CCCHHHHHHHHHHHHHh
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK-------PVRRNELRNLWQHVWRR 153 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K-------P~~~~eL~~~L~~v~rr 153 (603)
++++.+|++. .+++|||...+-.+.+.+.+++.+||+...+- |.-..++..-|...+..
T Consensus 265 ~~~i~~v~~~--~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~ 330 (354)
T 4ef8_A 265 LANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAK 330 (354)
T ss_dssp HHHHHHHHHH--CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 7888888765 35799999999999999999999999877543 65555666555555443
No 397
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=26.31 E-value=1e+02 Score=29.72 Aligned_cols=77 Identities=10% Similarity=0.016 Sum_probs=49.0
Q ss_pred hHHhhhcCCCEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCC-CHHHHHHH
Q 007462 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTL 98 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgm-DGleLLr~ 98 (603)
|-..+.+...+|..||-++......+..+...|. .+. ...+..+.... .. ..+|+|++...+... +-..+++.
T Consensus 82 ~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~--~~fD~v~~~~~l~~~~~~~~~l~~ 158 (285)
T 4htf_A 82 TAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-LE--TPVDLILFHAVLEWVADPRSVLQT 158 (285)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-CS--SCEEEEEEESCGGGCSCHHHHHHH
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-cC--CCceEEEECchhhcccCHHHHHHH
Confidence 4444545567999999999999999999887665 232 23454433221 22 349999998655433 44567777
Q ss_pred HHhc
Q 007462 99 VMEH 102 (603)
Q Consensus 99 Lr~~ 102 (603)
+...
T Consensus 159 ~~~~ 162 (285)
T 4htf_A 159 LWSV 162 (285)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7643
No 398
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=26.24 E-value=1.7e+02 Score=29.64 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=61.3
Q ss_pred CCEEEEEecCHHHHH-HHHHHHHhCCCEEEEECC-HHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQ-IVTALLRKSSYRVTAVPD-GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~-lL~~lL~~~Gy~V~~A~d-g~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++|.||.--..-.. .+..+....+++++.+.+ -.+..+.+.+.- ...-+.. |--+++. . +++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-~~~~~~~-------~~~~ll~----~---~~v 69 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFI-SDIPVLD-------NVPAMLN----Q---VPL 69 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTS-CSCCEES-------SHHHHHH----H---SCC
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhc-CCCcccC-------CHHHHhc----C---CCC
Confidence 379999999886664 455554445788775432 233333333221 0111121 2223332 1 233
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 007462 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (603)
Q Consensus 109 PVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~r 152 (603)
-+|+++. ....+.+..|++.|..=|+-||+ +.++...+++.+.+
T Consensus 70 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 70 DAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp SEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 4444443 34677788999999999999996 56777777765543
No 399
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=26.23 E-value=2.1e+02 Score=27.08 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=47.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHhcC---CCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VT-AVPDGLKAWEVLKGR---PRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~-~A~dg~eALe~L~~~---~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
..+|..||-++......+..+...|+. |. ...+..+.+..+... ...||+||+|...+ +-..+++.+.
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~ 168 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLM 168 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHH
Confidence 469999999999999999999888872 43 356777776655311 13499999996432 3345555554
No 400
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.18 E-value=2.6e+02 Score=26.56 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HH---HHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEE
Q 007462 43 TRQIVTALLRKSSYRVTAVPD---G---LK---AWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~d---g---~e---ALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVIml 113 (603)
+...+...++..||.+..+.. . .+ .++.+.... +|-||+--..+ + -+.++.+.. ..+|||++
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~--~-~~~~~~l~~----~~iPvV~~ 96 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRD--CDGVVVISHDL--H-DEDLDELHR----MHPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTT--CSEEEECCSSS--C-HHHHHHHHH----HCSSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcC--ccEEEEecCCC--C-HHHHHHHhh----cCCCEEEE
Confidence 344455667788998776532 1 23 566665544 89888743222 2 356666654 26899988
Q ss_pred ecC
Q 007462 114 SSQ 116 (603)
Q Consensus 114 Sa~ 116 (603)
...
T Consensus 97 ~~~ 99 (290)
T 2rgy_A 97 NRA 99 (290)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
No 401
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=26.08 E-value=1e+02 Score=27.79 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCceEEEEeC----CCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH
Q 007462 67 AWEVLKGRPRNIDLILTEV----DLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM 126 (603)
Q Consensus 67 ALe~L~~~~~~pDLVLlDl----~MP-gmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al 126 (603)
..+++.+.. +|+||.=. ..| .-||+.+.+.--.+ +||++ |..+....+.+++
T Consensus 66 I~d~I~~ge--IdlVInt~~pl~~~~h~~D~~~IrR~A~~~----~IP~~--T~latA~a~v~al 122 (134)
T 2xw6_A 66 MGARVAEGR--ILAVIFFRDPLTAQPHEPDVQALLRVCDVH----GVPLA--TNPMAAEALIPWL 122 (134)
T ss_dssp HHHHHHTTC--EEEEEEECCTTTCCTTSCCSHHHHHHHHHH----TCCEE--CSHHHHHHHHHHH
T ss_pred HHHHHHCCC--ccEEEEccCcccCCCccchHHHHHHHHHHc----CCCeE--cCHHHHHHHHHHH
Confidence 456666543 77777633 355 56777666654332 46654 5555555555555
No 402
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=26.04 E-value=2.2e+02 Score=26.84 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEec
Q 007462 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDG-leLLr~Lr~~~~~~~IPVImlSa 115 (603)
...+...++..||.+..+. +.. +.++.+... .+|-||+--. ..+. .+.++.+.. ..+|||++..
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~i~~ 90 (271)
T 2dri_A 20 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR--GTKILLINPT--DSDAVGNAVKMANQ----ANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTT--TEEEEEECCS--STTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--ChHHHHHHHHHHHH----CCCcEEEecC
Confidence 3444556677899877643 322 234555443 4998887422 2222 245666643 3689998864
No 403
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.96 E-value=2e+02 Score=27.58 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 44 RQIVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~dg------~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
...+...+.+.||.+..+... .+.++.+.... +|-||+--.... -+.++.+.. ..+|||++...
T Consensus 46 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~---~~~~~~l~~----~~iPvV~i~~~ 115 (305)
T 3huu_A 46 LNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKS--VDGFILLYSLKD---DPIEHLLNE----FKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTC--CSEEEESSCBTT---CHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCCcCC---cHHHHHHHH----cCCCEEEECCC
Confidence 334555566789998775422 23456665544 898887322211 256666654 36899988754
No 404
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=25.88 E-value=54 Score=32.79 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~------d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
++++++|++. .++|||+|+-.. -...+..|.+.|++++|+--+..+++...+..+
T Consensus 80 ~~~v~~ir~~---~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRAL---TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHH---CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhc---CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 5778888754 479999985322 245567789999999999877666665555444
No 405
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=25.86 E-value=3.5e+02 Score=27.89 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=58.6
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCC--------CCCCCHHHHHHHHHhc-----c-cCC-CC
Q 007462 46 IVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD--------LPSISGFALLTLVMEH-----E-ICK-NI 108 (603)
Q Consensus 46 lL~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~--------MPgmDGleLLr~Lr~~-----~-~~~-~I 108 (603)
.+..+.+..+..|+. +.+.++|..+++. ..|.|.+-.. -.+..-++.+..+++. . ... ++
T Consensus 202 ~i~~l~~~~~~pvi~ggi~t~e~a~~~~~~---Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~i 278 (393)
T 2qr6_A 202 NLKEFIGSLDVPVIAGGVNDYTTALHMMRT---GAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYV 278 (393)
T ss_dssp CHHHHHHHCSSCEEEECCCSHHHHHHHHTT---TCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHhcCCCEEECCcCCHHHHHHHHHc---CCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcce
Confidence 355555556665553 5688888877753 3788888430 0124456666655443 0 111 39
Q ss_pred eEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 109 PVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 109 PVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
|||.-.+..+...+.+++.+||+...+-
T Consensus 279 pvia~GGI~~~~dv~kalalGA~~V~iG 306 (393)
T 2qr6_A 279 HIIADGSIENSGDVVKAIACGADAVVLG 306 (393)
T ss_dssp EEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 9998888889999999999999888653
No 406
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=25.69 E-value=1.5e+02 Score=28.49 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=45.0
Q ss_pred hHHhhhcCCCEEEEEecC------HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH
Q 007462 23 WETFLQRMALRVLLVEAD------DSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD------~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL 96 (603)
+..|+. ...+|++|+-- +.....+...|+.+|+++..+....+..+.|++ .|.||+ ||.+-..++
T Consensus 24 l~~~~~-~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----ad~I~l----pGG~~~~~~ 94 (229)
T 1fy2_A 24 IANQLN-GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----AEIIIV----GGGNTFQLL 94 (229)
T ss_dssp HHHHHT-TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----CSEEEE----CCSCHHHHH
T ss_pred HHHHhc-CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----CCEEEE----CCCcHHHHH
Confidence 455654 34799999754 256667788889999988776322223344433 466664 677777777
Q ss_pred HHHHh
Q 007462 97 TLVME 101 (603)
Q Consensus 97 r~Lr~ 101 (603)
+.|++
T Consensus 95 ~~l~~ 99 (229)
T 1fy2_A 95 KESRE 99 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77755
No 407
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=25.69 E-value=2.1e+02 Score=27.20 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
+...+...+++.||.+..+. +.. +.++.+.... +|-||+--. ..+ -+.++.+.. ..+|||++...
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~--~~~-~~~~~~l~~----~~iPvV~~~~~ 104 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQ--VDGIVFMGG--NIT-DEHVAEFKR----SPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCS--CCC-HHHHHHHHH----SSSCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecC--CCC-HHHHHHHHh----cCCCEEEEccc
Confidence 33445556678899876643 222 3455555443 898877422 122 355666643 36899988653
No 408
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=25.65 E-value=1.8e+02 Score=25.52 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=44.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
..+|..||-++...+..+..+...|.. +.. ..|..+.+..+. ..+|+|++|.......-.++++.+.
T Consensus 54 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~fD~i~~~~~~~~~~~~~~~~~l~ 123 (177)
T 2esr_A 54 MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT---GRFDLVFLDPPYAKETIVATIEALA 123 (177)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC---SCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc---CCCCEEEECCCCCcchHHHHHHHHH
Confidence 469999999999999999999887753 443 456665444322 2499999985321122345566664
No 409
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=25.58 E-value=1.8e+02 Score=28.58 Aligned_cols=64 Identities=11% Similarity=-0.026 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 007462 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 42 ~~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlS 114 (603)
.+...+...+++.||.+..+. +.. +.++.+.... +|-||+--. ..+ -++++.+.. ..+|||++-
T Consensus 85 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdGiIi~~~--~~~-~~~~~~l~~----~~iPvV~i~ 154 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWR--PSGVIIAGL--EHS-EAARAMLDA----AGIPVVEIM 154 (344)
T ss_dssp HHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTC--CSEEEEECS--CCC-HHHHHHHHH----CSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEECC--CCC-HHHHHHHHh----CCCCEEEEe
Confidence 345556666778899877643 233 3455555443 887777321 122 256666654 368999883
No 410
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=25.55 E-value=1e+02 Score=32.07 Aligned_cols=82 Identities=17% Similarity=0.071 Sum_probs=55.2
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc--cCCCCeEEEEecCCCHHHHHHHHHcCCcEEE-eCCCC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE--ICKNIPVIMMSSQDSVSTVYKCMMRGAADYL-VKPVR 139 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~--~~~~IPVImlSa~~d~~~~~~al~~GA~DyL-~KP~~ 139 (603)
+..+|+++++... .++|.+++--+| +-++.+++|++.- ....+||+.-= ..+...+.++++.|+.|++ +||-.
T Consensus 213 ~~~~ai~~~~~l~-~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~ 288 (392)
T 3p3b_A 213 NLNLTKEVLAALS-DVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIW 288 (392)
T ss_dssp CHHHHHHHHHHTT-TSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTT
T ss_pred CHHHHHHHHHHHH-hcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccc
Confidence 7789988887653 578888887777 5567777776530 00258887655 5566778888999977765 78876
Q ss_pred --HHHHHHHHH
Q 007462 140 --RNELRNLWQ 148 (603)
Q Consensus 140 --~~eL~~~L~ 148 (603)
..+.+.++.
T Consensus 289 ~Git~~~~i~~ 299 (392)
T 3p3b_A 289 PGFTHWMELGE 299 (392)
T ss_dssp BCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 444444443
No 411
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=25.51 E-value=1.9e+02 Score=29.46 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=55.7
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
|....|||||+.- -.+...+...|.+ .++|..+.-..+.++.+... ...+-+|+. |--.+.+.|.. .
T Consensus 12 ~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~---~~~~~~d~~----d~~~l~~~~~~----~ 78 (365)
T 3abi_A 12 IEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF---ATPLKVDAS----NFDKLVEVMKE----F 78 (365)
T ss_dssp ----CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT---SEEEECCTT----CHHHHHHHHTT----C
T ss_pred ccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc---CCcEEEecC----CHHHHHHHHhC----C
Confidence 4445679999988 7778888888865 47887766555566666543 455666652 33344444432 2
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
++-|.++-..-....+..|++.|++ |+-
T Consensus 79 DvVi~~~p~~~~~~v~~~~~~~g~~-yvD 106 (365)
T 3abi_A 79 ELVIGALPGFLGFKSIKAAIKSKVD-MVD 106 (365)
T ss_dssp SEEEECCCGGGHHHHHHHHHHHTCE-EEE
T ss_pred CEEEEecCCcccchHHHHHHhcCcc-eEe
Confidence 3322222233356777888889985 553
No 412
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=25.47 E-value=3.3e+02 Score=27.83 Aligned_cols=41 Identities=2% Similarity=0.016 Sum_probs=33.0
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++++++|++. .+++|||.--+..+.+.+.+++. ||+..++-
T Consensus 185 ~~~i~~ik~~--~~~iPVianGgI~s~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 185 HDWVHRLKGD--FPQLTFVTNGGIRSLEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp HHHHHHHHHH--CTTSEEEEESSCCSHHHHHHHHT-TSSEEEEC
T ss_pred HHHHHHHHHh--CCCCeEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 6788888764 24799998888889999999998 99887654
No 413
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.47 E-value=3.2e+02 Score=29.13 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=52.1
Q ss_pred hcCCCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHhcCCCCceEEEEeCCCCCCC------
Q 007462 28 QRMALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEVDLPSIS------ 91 (603)
Q Consensus 28 ~~m~lrVLLVDDD~---~~r~lL~~lL~~~Gy~V~~A~---dg----~eALe~L~~~~~~pDLVLlDl~MPgmD------ 91 (603)
.+...+|+||+-|. ...+.+..+-...|..+.... ++ .++++.+... .+|+||+|. |+..
T Consensus 122 ~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~--~~DvvIIDT--aGr~~~~~d~ 197 (433)
T 3kl4_A 122 KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKN--KMDIIIVDT--AGRHGYGEET 197 (433)
T ss_dssp HHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTT--TCSEEEEEE--CCCSSSCCTT
T ss_pred HHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhc--CCCEEEEEC--CCCccccCCH
Confidence 34457888888774 233444444455676665443 22 2344544432 499999995 3432
Q ss_pred -HHHHHHHHHhcccCCCCeEEEEecCC--CHHHHHHHHH--cCCcEEE-eC
Q 007462 92 -GFALLTLVMEHEICKNIPVIMMSSQD--SVSTVYKCMM--RGAADYL-VK 136 (603)
Q Consensus 92 -GleLLr~Lr~~~~~~~IPVImlSa~~--d~~~~~~al~--~GA~DyL-~K 136 (603)
-+.-+..|... ..++..++++.+.. +.....+.+. .+...++ .|
T Consensus 198 ~lm~el~~i~~~-~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTK 247 (433)
T 3kl4_A 198 KLLEEMKEMYDV-LKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITK 247 (433)
T ss_dssp HHHHHHHHHHHH-HCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEEC
T ss_pred HHHHHHHHHHHh-hCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEec
Confidence 22333333222 12444556666654 2223334443 4555554 44
No 414
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=25.34 E-value=1.3e+02 Score=28.70 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=38.0
Q ss_pred HHHHHH---HHHHHHhCCCEEEEECC------HHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 007462 41 DSTRQI---VTALLRKSSYRVTAVPD------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (603)
Q Consensus 41 ~~~r~l---L~~lL~~~Gy~V~~A~d------g~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVI 111 (603)
+....+ +...+++.||.+..+.. ..+.++.+.... +|-||+--.... -+.++.+.+ ..+|||
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~---~~~~~~l~~----~~iPvV 93 (288)
T 3gv0_A 23 GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGS--ADGVIISKIEPN---DPRVRFMTE----RNMPFV 93 (288)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTC--CSEEEEESCCTT---CHHHHHHHH----TTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCC--ccEEEEecCCCC---cHHHHHHhh----CCCCEE
Confidence 444444 44556678998877531 234455555443 887776321111 255666654 368999
Q ss_pred EEecC
Q 007462 112 MMSSQ 116 (603)
Q Consensus 112 mlSa~ 116 (603)
++...
T Consensus 94 ~i~~~ 98 (288)
T 3gv0_A 94 THGRS 98 (288)
T ss_dssp EESCC
T ss_pred EECCc
Confidence 88654
No 415
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=25.25 E-value=3.6e+02 Score=27.86 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 65 LKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MPgmDG-leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.+.++.+.+.. +|+|.+|........ ++.++++++.. ++|||+ ......+.+..+.++||+.+.+
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G~~~~~~~~i~~i~~~~---~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--cCeEEEeCCCCCcHHHHHHHHHHHHhc---CCcEEE-ccCCCHHHHHHHHHcCcCEEEE
Confidence 44444444433 899999876533322 46777776542 678876 2335678889999999988876
No 416
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=25.23 E-value=73 Score=29.73 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=39.4
Q ss_pred HhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCc-eEEEEeCC
Q 007462 25 TFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI-DLILTEVD 86 (603)
Q Consensus 25 ~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~p-DLVLlDl~ 86 (603)
.+..-+.++|||..-.-.+-..|...|...|++|+.+.-..+.++.+.... + .++..|+.
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~--~~~~~~~Dl~ 75 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERG--ASDIVVANLE 75 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTT--CSEEEECCTT
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCC--CceEEEcccH
Confidence 333344679999999999988888888888999887653333334444322 6 77888876
No 417
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=25.19 E-value=1.7e+02 Score=28.90 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred EEEEEec-CHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC-CC
Q 007462 33 RVLLVEA-DDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC-KN 107 (603)
Q Consensus 33 rVLLVDD-D~~~---r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~-~~ 107 (603)
+|+||-. .+.. ...+...|+..|+++. . ..+|+||+= |.||. +++.++..... .+
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~--~~~D~vv~l----GGDGT-~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------D--VEPEIVISI----GGDGT-FLSAFHQYEERLDE 61 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------S--SSCSEEEEE----ESHHH-HHHHHHHTGGGTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------C--CCCCEEEEE----cCcHH-HHHHHHHHhhcCCC
Confidence 5666644 2222 3345566788888872 1 238988863 67773 33333322111 37
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Q 007462 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (603)
Q Consensus 108 IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~rr 153 (603)
+||+-+.. |-.+||. .+.++++..++..++..
T Consensus 62 ~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 62 IAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAKG 93 (272)
T ss_dssp CEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHTT
T ss_pred CCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHcC
Confidence 89987742 5566665 55677777778777654
No 418
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=25.19 E-value=3.4e+02 Score=27.67 Aligned_cols=67 Identities=13% Similarity=-0.034 Sum_probs=45.9
Q ss_pred EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 58 V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
.+.+.+.+++.+.++.. .|+|.+|- |+--++-+.++.. .++ ..|..|+--+.+.+.+....|++.|-
T Consensus 213 eVEvdtlde~~eAl~aG---aD~I~LDn----~~~~~l~~av~~i--~~~-v~ieaSGGI~~~~i~~~a~tGVD~is 279 (298)
T 3gnn_A 213 QIEVETLDQLRTALAHG---ARSVLLDN----FTLDMMRDAVRVT--EGR-AVLEVSGGVNFDTVRAIAETGVDRIS 279 (298)
T ss_dssp EEEESSHHHHHHHHHTT---CEEEEEES----CCHHHHHHHHHHH--TTS-EEEEEESSCSTTTHHHHHHTTCSEEE
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEECC----CCHHHHHHHHHHh--CCC-CeEEEEcCCCHHHHHHHHHcCCCEEE
Confidence 45589999999998853 89999995 3333333333322 123 45667888888888888899996663
No 419
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=25.09 E-value=2e+02 Score=30.65 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred hHHhhhcCCCEEEEEecCH-----HHHHHHHHHHHh-------CCCEEEEECCH-----HHHHHHHhcCCCCceEEEEeC
Q 007462 23 WETFLQRMALRVLLVEADD-----STRQIVTALLRK-------SSYRVTAVPDG-----LKAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD~-----~~r~lL~~lL~~-------~Gy~V~~A~dg-----~eALe~L~~~~~~pDLVLlDl 85 (603)
.+.|.......+.|||++. .++.-|...+.. .+...+.+..+ .+..+.+.... .|.|+++.
T Consensus 176 ~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G--~d~ivi~~ 253 (491)
T 1zfj_A 176 ERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAG--ADAIVIDT 253 (491)
T ss_dssp HHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHT--CSEEEECC
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcC--CCeEEEee
Q ss_pred CCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 86 DLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 86 ~MPgmD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
...... -+++++.|+..- +.+||| .-...+.+.+..++.+||+.+.+
T Consensus 254 a~g~~~~~~~~i~~l~~~~--p~~pvi-~G~v~t~~~a~~~~~~Gad~I~v 301 (491)
T 1zfj_A 254 AHGHSAGVLRKIAEIRAHF--PNRTLI-AGNIATAEGARALYDAGVDVVKV 301 (491)
T ss_dssp SCTTCHHHHHHHHHHHHHC--SSSCEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred ecCcchhHHHHHHHHHHHC--CCCcEe-CCCccCHHHHHHHHHcCCCEEEE
No 420
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=25.08 E-value=1.6e+02 Score=31.10 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=40.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC------CCE---E-EEECCHHHHHHHHhcCCCCceEEEEeCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS------SYR---V-TAVPDGLKAWEVLKGRPRNIDLILTEVDLP 88 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~------Gy~---V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MP 88 (603)
..+|-+||=|+.+.++.+..|... ..+ + +...|+.+-++...+....||+||+|+.-|
T Consensus 228 ~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 228 PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 468999999999999999887431 112 2 346788888775543233599999998654
No 421
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=25.03 E-value=3.3e+02 Score=23.41 Aligned_cols=78 Identities=9% Similarity=0.016 Sum_probs=52.9
Q ss_pred hhhcCCCEEEEEecCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 007462 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSY-RVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (603)
Q Consensus 26 fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy-~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~ 103 (603)
.+.+...+|..||-++......+..+...|. .+. ...+..+ .+... .+|+|+++.. .+-..+++.+...
T Consensus 52 ~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~--~~D~i~~~~~---~~~~~~l~~~~~~- 122 (183)
T 2yxd_A 52 EIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKL--EFNKAFIGGT---KNIEKIIEILDKK- 122 (183)
T ss_dssp HHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGC--CCSEEEECSC---SCHHHHHHHHHHT-
T ss_pred HHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCC--CCcEEEECCc---ccHHHHHHHHhhC-
Confidence 3334567999999999999999999987765 233 3456655 23332 4999999865 5667788888654
Q ss_pred cCCCCeEEEEe
Q 007462 104 ICKNIPVIMMS 114 (603)
Q Consensus 104 ~~~~IPVImlS 114 (603)
++--+|+.+
T Consensus 123 --~gG~l~~~~ 131 (183)
T 2yxd_A 123 --KINHIVANT 131 (183)
T ss_dssp --TCCEEEEEE
T ss_pred --CCCEEEEEe
Confidence 444444443
No 422
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=25.02 E-value=5.3e+02 Score=26.00 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=58.3
Q ss_pred EEEEEecCHHH----HHHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEADDST----RQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDDD~~~----r~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
.|||.|.+-.. ...++.+-+..+. -.+.+.+.+++.+.++. ..|+|.+|- ++- +.++++.+. ...
T Consensus 181 ~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~~-e~l~~~v~~-~~~ 251 (296)
T 1qap_A 181 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FNT-DQMREAVKR-VNG 251 (296)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CCH-HHHHHHHHT-TCT
T ss_pred EEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CCH-HHHHHHHHH-hCC
Confidence 35555555443 4455555444444 35568888998888864 389999995 333 444444332 223
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+++| ..|+--+.+.+......||+.|-+
T Consensus 252 ~~~I-~ASGGIt~~~i~~~a~~GvD~isv 279 (296)
T 1qap_A 252 QARL-EVSGNVTAETLREFAETGVDFISV 279 (296)
T ss_dssp TCCE-EECCCSCHHHHHHHHHTTCSEEEC
T ss_pred CCeE-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 4554 456666999999999999966543
No 423
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=24.99 E-value=2.2e+02 Score=28.00 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=45.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCC-----CEE-EEECCHHHHHHHHhcCCCCceEEEEeCCCCCCC--H---HHHHHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSS-----YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS--G---FALLTLV 99 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~G-----y~V-~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD--G---leLLr~L 99 (603)
..+|..||=++...+..+..+...+ -++ +...|+.+.+... ...+|+||+|...|... . .++++.+
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~ 178 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPIGPAETLFNQNFYEKI 178 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCTTTGGGGGSSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceEEEEcCCCCCCcchhhhHHHHHHHH
Confidence 4699999999999999998876431 223 2356776655432 23599999998665422 1 3666666
Q ss_pred Hh
Q 007462 100 ME 101 (603)
Q Consensus 100 r~ 101 (603)
+.
T Consensus 179 ~~ 180 (283)
T 2i7c_A 179 YN 180 (283)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 424
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=24.91 E-value=1.9e+02 Score=28.43 Aligned_cols=73 Identities=10% Similarity=0.009 Sum_probs=45.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----hcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-----KGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L-----~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~ 105 (603)
+.++|||-.-+... .+..+++...+ +++|.-|...+..+ .. ..||+|+-|+.--. -++++.+...
T Consensus 21 ~~~~lIv~ng~~~~-~~~~~~~~~~~-~i~aDgGa~~l~~~~~~~~~~--~~Pd~ivGD~DSi~---~~~~~~~~~~--- 90 (247)
T 3s4y_A 21 LKYCLVILNQPLDN-YFRHLWNKALL-RACADGGANRLYDITEGERES--FLPEFINGDFDSIR---PEVREYYATK--- 90 (247)
T ss_dssp CCEEEEECSSCCCT-THHHHHHHCSC-EEEETTHHHHHHHHTTTCGGG--CCCSEEEECCSSSC---HHHHHHHHHT---
T ss_pred CCEEEEEECCcchH-HHHHHHhhCCE-EEEEchHHHHHHHhccccccC--CCccEEEcCCcCCC---HHHHHHHHhc---
Confidence 35788887665443 67777777544 67788888777654 22 34999999974433 2445555432
Q ss_pred CCCeEEEEe
Q 007462 106 KNIPVIMMS 114 (603)
Q Consensus 106 ~~IPVImlS 114 (603)
.++|+-..
T Consensus 91 -~~~i~~~p 98 (247)
T 3s4y_A 91 -GCELISTP 98 (247)
T ss_dssp -TCEEEECC
T ss_pred -CCEEEECC
Confidence 35666533
No 425
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=24.90 E-value=4.3e+02 Score=26.07 Aligned_cols=62 Identities=27% Similarity=0.198 Sum_probs=35.7
Q ss_pred cCCCEEEEEecCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHhcCCCCceEEEEeCC-CCCCCH
Q 007462 29 RMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEVD-LPSISG 92 (603)
Q Consensus 29 ~m~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~---dg~----eALe~L~~~~~~pDLVLlDl~-MPgmDG 92 (603)
....+|+++|-|.. ....+..+....|+.+..+. ++. .+++.+... .+|+||+|.- ..+.|.
T Consensus 124 ~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~--~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 124 GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE--ARDLILVDTAGRLQIDE 196 (295)
T ss_dssp HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH--TCCEEEEECCCCSSCCH
T ss_pred HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccccH
Confidence 34578999998753 22334445555677766542 332 345554322 3899999974 333443
No 426
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=24.86 E-value=1.6e+02 Score=30.18 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=45.9
Q ss_pred EEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 58 V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
.+.+.+.+|+.+.++.. .|+|++|-.-| +.++++.+.- ..-.+|..|+-...+.+......|++.+-
T Consensus 211 eVEv~tl~e~~eAl~aG---aDiImLDn~s~-----~~l~~av~~~--~~~v~leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 211 AIECDNISQVEESLSNN---VDMILLDNMSI-----SEIKKAVDIV--NGKSVLEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSHHHHHHHHHTT---CSEEEEESCCH-----HHHHHHHHHH--TTSSEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCHHHHHHHHHcC---CCEEEECCCCH-----HHHHHHHHhh--cCceEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 45689999999999863 79999994322 2333222111 12256778888888888888889987664
No 427
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=24.82 E-value=1.3e+02 Score=30.36 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=51.0
Q ss_pred CHHHHHHHHhcCCCCceEEEEe-C--CCCC---CC-HHHHHHHHHhcccCCCCeEEEEecCC-C-----HHHHHHHHHcC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTE-V--DLPS---IS-GFALLTLVMEHEICKNIPVIMMSSQD-S-----VSTVYKCMMRG 129 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlD-l--~MPg---mD-GleLLr~Lr~~~~~~~IPVImlSa~~-d-----~~~~~~al~~G 129 (603)
+...|++.+.... +.+++|+. - .-|. .+ -+..+..|++. .++|||+.+++. . ......|..+|
T Consensus 160 ei~~Ave~i~~~G-n~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~---~~lpVi~dssH~~g~~~~~~~~~~aAva~G 235 (276)
T 1vs1_A 160 ELLAAAEYILLEG-NWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEA---THLPVIVDPSHPAGRRSLVPALAKAGLAAG 235 (276)
T ss_dssp HHHHHHHHHHHTT-CCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHH---BSSCEEECCHHHHCSGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHH---hCCCEEEeCCCCCCccchHHHHHHHHHHcC
Confidence 4445777776543 47999988 2 2232 11 23334445442 267988888765 2 46677789999
Q ss_pred CcEEE-eCCC-------------CHHHHHHHHHHH
Q 007462 130 AADYL-VKPV-------------RRNELRNLWQHV 150 (603)
Q Consensus 130 A~DyL-~KP~-------------~~~eL~~~L~~v 150 (603)
|++++ -|-+ .+++|..+++.+
T Consensus 236 a~Gl~IE~H~~~d~a~~D~~~sl~p~~~~~lv~~i 270 (276)
T 1vs1_A 236 ADGLIVEVHPNPEEALSDAKQQLTPGEFARLMGEL 270 (276)
T ss_dssp CSEEEEEBCSSGGGCSSCGGGCBCHHHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCCchhcCCCHHHHHHHHHHH
Confidence 98764 5544 456666666554
No 428
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=24.73 E-value=2.5e+02 Score=27.46 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=42.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhC--CC----------EEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCC-----H
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKS--SY----------RVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-----G 92 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~--Gy----------~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmD-----G 92 (603)
..+|..||-++...+..+..+ .. ++ .+. ...|+.+.+.. . ..||+||+|...|... .
T Consensus 98 ~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~--~~fD~Ii~d~~~~~~~~~~l~~ 172 (281)
T 1mjf_A 98 VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N--RGFDVIIADSTDPVGPAKVLFS 172 (281)
T ss_dssp CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C--CCEEEEEEECCCCC-----TTS
T ss_pred CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c--CCeeEEEECCCCCCCcchhhhH
Confidence 469999999999999988887 32 21 232 34676665543 2 3499999998654311 2
Q ss_pred HHHHHHHHh
Q 007462 93 FALLTLVME 101 (603)
Q Consensus 93 leLLr~Lr~ 101 (603)
.++++.++.
T Consensus 173 ~~~l~~~~~ 181 (281)
T 1mjf_A 173 EEFYRYVYD 181 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666654
No 429
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=24.73 E-value=2.2e+02 Score=28.88 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHhCCCEEEEE-------CCHHHHHHHHhcCCCCceEEEEeCCC--------CCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 51 LRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDL--------PSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 51 L~~~Gy~V~~A-------~dg~eALe~L~~~~~~pDLVLlDl~M--------PgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
+...|.-|..- .+...|++++.... +.+|+|+.... -++..+..++++ ++++|||+-+.
T Consensus 130 va~~gkPVilK~G~~~t~~ei~~ave~i~~~G-n~~i~L~erg~~y~~~~~~vdl~~i~~lk~~-----~~~~pV~~D~s 203 (285)
T 3sz8_A 130 IAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVG-NDRVMLCERGSSFGYDNLVVDMLGFRQMAET-----TGGCPVIFDVT 203 (285)
T ss_dssp HHHTSSCEEEECCTTSCGGGTHHHHHHHHHTT-CCCEEEEECCEECSSSCEECCTTHHHHHHHH-----TTSCCEEEETT
T ss_pred HHccCCcEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEEEeCCCCCCCCcCccCHHHHHHHHHh-----CCCCCEEEeCC
Confidence 34556655431 24467888887643 47899997533 246677766654 13589998777
Q ss_pred CC------------C-----HHHHHHHHHcCCcE-EEeCCCCH
Q 007462 116 QD------------S-----VSTVYKCMMRGAAD-YLVKPVRR 140 (603)
Q Consensus 116 ~~------------d-----~~~~~~al~~GA~D-yL~KP~~~ 140 (603)
+. . ......|..+||++ ||-|-+++
T Consensus 204 Hs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~p 246 (285)
T 3sz8_A 204 HSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDP 246 (285)
T ss_dssp TTCC---------------HHHHHHHHHHHCCSEEEEEEESCG
T ss_pred CccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccCh
Confidence 65 2 55677889999997 56664443
No 430
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=24.71 E-value=1.5e+02 Score=27.66 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 007462 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~ 117 (603)
...+...+++.||.+..+. +.. +.++.+.... +|-||+--..+. ..+.++.+.. ..+|||++....
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~--~~~~~~~~~~----~~iPvV~~~~~~ 92 (272)
T 3o74_A 21 AKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARR--CDALFVASCLPP--EDDSYRELQD----KGLPVIAIDRRL 92 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCCCS--SCCHHHHHHH----TTCCEEEESSCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCccc--cHHHHHHHHH----cCCCEEEEccCC
Confidence 4445555677899876643 222 3455555443 888887433322 2345555644 368998886543
No 431
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=24.65 E-value=2.2e+02 Score=26.94 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEec
Q 007462 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDG-leLLr~Lr~~~~~~~IPVImlSa 115 (603)
...+...++..||.+..+. +.. +.++.+.... +|-||+--. ..+. .+.++.+.. ..+|||++..
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~~~~ 90 (283)
T 2ioy_A 20 KNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQK--VDVLLINPV--DSDAVVTAIKEANS----KNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCS--STTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcC--CCEEEEeCC--chhhhHHHHHHHHH----CCCeEEEecC
Confidence 3445556677899877653 232 3445454443 898887322 2222 245666643 3689998854
No 432
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=24.48 E-value=3e+02 Score=27.30 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe--CCCCHHHHHHHHHHHH
Q 007462 90 ISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV--KPVRRNELRNLWQHVW 151 (603)
Q Consensus 90 mDG-leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~--KP~~~~eL~~~L~~v~ 151 (603)
..| ++.++.+++. -++||+.--..-+...+..|...||+..++ .-+..+++..++..+.
T Consensus 98 f~Gs~~~l~~ir~~---v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 98 FQGSLDDLDAVRAS---VSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh---CCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 344 7888988764 378999766556776789999999999986 5566777777666553
No 433
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=24.36 E-value=1.4e+02 Score=25.54 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=48.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPV 110 (603)
.|+.|+--.|+.....++.+|+..|+ +..+.|..|++..|- + +-.|+
T Consensus 22 ~M~eL~ra~d~v~a~~~k~LLe~aGI----------------------~~fv~De~ms~~~Ge----------I-g~~P~ 68 (97)
T 2hfv_A 22 HLRELLRTNDAVLLSAVGALLDGADI----------------------GHLVLDQNMSILEGS----------L-GVIPR 68 (97)
T ss_dssp SEEEEEEECCHHHHHHHHHHHHHTTC----------------------CEECCSCCCCSSSCC----------S-SSSCE
T ss_pred cceeeeecCCHHHHHHHHHHHHhCCC----------------------CEEEcCCcchhhcCc----------c-ccCcE
Confidence 45888889999999999999988774 556667777776651 1 24578
Q ss_pred EEEecCCCHHHHHHHH-HcCC
Q 007462 111 IMMSSQDSVSTVYKCM-MRGA 130 (603)
Q Consensus 111 ImlSa~~d~~~~~~al-~~GA 130 (603)
+++....+.+.+.+.+ +.|.
T Consensus 69 rwlV~eed~~~Ar~LL~~~~~ 89 (97)
T 2hfv_A 69 RVLVHEDDLAGARRLLTDAGL 89 (97)
T ss_dssp EEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEChhhHHHHHHHHHHcCC
Confidence 8888777777776665 3443
No 434
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=24.24 E-value=3.5e+02 Score=28.86 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 88 PgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
|....+..+..+.... ++|||.=.+-.+...+.+|+.+||+...+-
T Consensus 312 ~~~~~l~~~~~~~~~~---~vpVia~GGi~~~~di~kalalGA~~v~~g 357 (486)
T 2cu0_A 312 PQITAVAMVADRAQEY---GLYVIADGGIRYSGDIVKAIAAGADAVMLG 357 (486)
T ss_dssp CHHHHHHHHHHHHHHH---TCEEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred chHHHHHHHHHHHHHc---CCcEEecCCCCCHHHHHHHHHcCCCceeeC
Confidence 3334445555554332 689998778889999999999999998654
No 435
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=24.19 E-value=2.6e+02 Score=27.52 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=54.5
Q ss_pred CEEEEEecCHHHHHH-HHHHHHhCCCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 32 LRVLLVEADDSTRQI-VTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 32 lrVLLVDDD~~~r~l-L~~lL~~~Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
++|.||.--..-+.. +..+.. .+++++.+ . +...+-+..+... ...+. .| ++.+-.. +++
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g--~~~~~-------~~----~~~~l~~---~~~ 63 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENG--IGKSV-------TS----VEELVGD---PDV 63 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTT--CSCCB-------SC----HHHHHTC---TTC
T ss_pred CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcC--CCccc-------CC----HHHHhcC---CCC
Confidence 367777765554444 445555 67876643 3 3333333333211 11011 12 1222111 233
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 007462 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (603)
Q Consensus 109 PVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~ 151 (603)
-+|+++. ....+.+..|++.|..=|+.||+ +.++...+++.+.
T Consensus 64 D~V~i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~ 110 (332)
T 2glx_A 64 DAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAR 110 (332)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred CEEEEeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 4444443 33567788899999888899997 5677666665543
No 436
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=24.10 E-value=1e+02 Score=24.55 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCccchhhhhhhhhcCCC-cccceeecc
Q 007462 558 DKKVRYESRKKLAEQRPR-VKGQFVRQV 584 (603)
Q Consensus 558 ~k~~ry~~rk~~a~~r~r-v~g~f~~~~ 584 (603)
.|+.-|+||-..|-.||| --|||....
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 466789999999999999 788998653
No 437
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=24.05 E-value=3.2e+02 Score=28.42 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=51.2
Q ss_pred CEEEEEecCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHH
Q 007462 32 LRVLLVEADDST-----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (603)
Q Consensus 32 lrVLLVDDD~~~-----r~lL~~lL~~~Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr 97 (603)
-++|||-|+... ...+...|+..|+.+..+. +..++++.+++.. +|+||- +.|.+-+++.+
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEK--VEAVLG---VGGGSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTT--CSEEEE---EESHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcC--CCEEEE---eCChhHHHHHH
Confidence 589999885543 3456666777788766543 3456667776654 898873 45667778877
Q ss_pred HHHhcc---------------cCCCCeEEEEec
Q 007462 98 LVMEHE---------------ICKNIPVIMMSS 115 (603)
Q Consensus 98 ~Lr~~~---------------~~~~IPVImlSa 115 (603)
.+.... ..+.+|+|.+-.
T Consensus 119 ~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 119 AVAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 775421 015789887643
No 438
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=24.00 E-value=4.3e+02 Score=25.54 Aligned_cols=68 Identities=15% Similarity=0.032 Sum_probs=38.7
Q ss_pred CEEEEEec-CHHHHHHHHHHH-----HhCCC--------EEEEEC--C-HHHHHHHHhcCCCCceEEEE-eCCCCCCCHH
Q 007462 32 LRVLLVEA-DDSTRQIVTALL-----RKSSY--------RVTAVP--D-GLKAWEVLKGRPRNIDLILT-EVDLPSISGF 93 (603)
Q Consensus 32 lrVLLVDD-D~~~r~lL~~lL-----~~~Gy--------~V~~A~--d-g~eALe~L~~~~~~pDLVLl-Dl~MPgmDGl 93 (603)
.+|+.||- ++.....++..+ ...|+ .+.... + .......+.. ..||+||+ |+..-..+--
T Consensus 103 ~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~fD~Ii~~dvl~~~~~~~ 180 (281)
T 3bzb_A 103 DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGL--QRFQVVLLADLLSFHQAHD 180 (281)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSC--SSBSEEEEESCCSCGGGHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccC--CCCCEEEEeCcccChHHHH
Confidence 38999999 899888888887 44432 333221 1 2223222222 24999997 7654433455
Q ss_pred HHHHHHHh
Q 007462 94 ALLTLVME 101 (603)
Q Consensus 94 eLLr~Lr~ 101 (603)
.+++.|..
T Consensus 181 ~ll~~l~~ 188 (281)
T 3bzb_A 181 ALLRSVKM 188 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66777654
No 439
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=23.96 E-value=2.4e+02 Score=26.81 Aligned_cols=67 Identities=10% Similarity=0.190 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCC-EEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEe
Q 007462 43 TRQIVTALLRKSSY-RVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMS 114 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy-~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~~IPVImlS 114 (603)
+...+...++..|| ++..+. +.. +.++.+.... +|.||+--. ..+ ..++++.+.. ..+|||++.
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--vdgiii~~~--~~~~~~~~~~~~~~----~~iPvV~~~ 91 (309)
T 2fvy_A 20 VRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG--VKALAINLV--DPAAAGTVIEKARG----QNVPVVFFN 91 (309)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCS--SGGGHHHHHHHHHT----TTCCEEEES
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcC--CCEEEEeCC--CcchhHHHHHHHHH----CCCcEEEec
Confidence 34455666778898 876643 333 3455554443 898887321 122 2356666643 468999886
Q ss_pred cCC
Q 007462 115 SQD 117 (603)
Q Consensus 115 a~~ 117 (603)
...
T Consensus 92 ~~~ 94 (309)
T 2fvy_A 92 KEP 94 (309)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 440
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=23.93 E-value=4.4e+02 Score=26.40 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=31.3
Q ss_pred CCCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECC---HH----HHHHHHhcCCCCceEEEEeC
Q 007462 30 MALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPD---GL----KAWEVLKGRPRNIDLILTEV 85 (603)
Q Consensus 30 m~lrVLLVDDD~~---~r~lL~~lL~~~Gy~V~~A~d---g~----eALe~L~~~~~~pDLVLlDl 85 (603)
...+|+|++-|.. ..+.+..+++..|+.++.... .. +++...... .||+||+|.
T Consensus 131 ~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~--~~dvvIiDt 194 (306)
T 1vma_A 131 EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALAR--NKDVVIIDT 194 (306)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHT--TCSEEEEEE
T ss_pred cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhc--CCCEEEEEC
Confidence 3568999987753 233455566666776654322 22 234332222 489999995
No 441
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=23.92 E-value=1.5e+02 Score=28.93 Aligned_cols=85 Identities=6% Similarity=-0.064 Sum_probs=50.4
Q ss_pred CEEEEEec-CHH---HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEA-DDS---TRQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDD-D~~---~r~lL~~lL~~~Gy~V~~-------A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+|-+ +.. ....++..|+..|..++. ..+....+..+.... +|+||+.. .+.+...+++.++
T Consensus 139 ~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~ 214 (356)
T 3ipc_A 139 AKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAG--VSIIYWGG--LHTEAGLIIRQAA 214 (356)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTT--CCEEEEES--CHHHHHHHHHHHH
T ss_pred CEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEcc--CchHHHHHHHHHH
Confidence 35655544 433 234456666777875422 236677777776644 89998643 2344667888887
Q ss_pred hcccCCCCeEEEEecCCCHHHH
Q 007462 101 EHEICKNIPVIMMSSQDSVSTV 122 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d~~~~ 122 (603)
+.. ..+|+|......+....
T Consensus 215 ~~g--~~~~~~~~~~~~~~~~~ 234 (356)
T 3ipc_A 215 DQG--LKAKLVSGDGIVSNELA 234 (356)
T ss_dssp HHT--CCCEEEECGGGCSHHHH
T ss_pred HCC--CCCcEEEeccccCHHHH
Confidence 654 35787765555555443
No 442
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=23.90 E-value=2.2e+02 Score=27.57 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=46.1
Q ss_pred CEEEEEec-CHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEA-DDST---RQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDD-D~~~---r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.+|-+ +... ...++..|+..|..++. . .+...++..+.... ||+||+-. .+.+...+++.++
T Consensus 139 ~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~i~~~~--~~~~a~~~~~~~~ 214 (346)
T 1usg_A 139 QRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKEN--IDFVYYGG--YYPEMGQMLRQAR 214 (346)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTT--CCEEEEES--CHHHHHHHHHHHH
T ss_pred CeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcC--CCEEEEcC--cchHHHHHHHHHH
Confidence 35655543 3332 33455667777876543 1 25556666666543 89988853 2234667888887
Q ss_pred hcccCCCCeEEEEecCCC
Q 007462 101 EHEICKNIPVIMMSSQDS 118 (603)
Q Consensus 101 ~~~~~~~IPVImlSa~~d 118 (603)
+.. ..+|+|...+..+
T Consensus 215 ~~g--~~~~~~~~~~~~~ 230 (346)
T 1usg_A 215 SVG--LKTQFMGPEGVGN 230 (346)
T ss_dssp HTT--CCCEEEECGGGCC
T ss_pred HcC--CCCeEEecCCCCc
Confidence 654 3567655444333
No 443
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=23.90 E-value=3.6e+02 Score=24.42 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=20.5
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEE
Q 007462 33 RVLLVEADDSTRQIVTALLRKSSYRVTAV 61 (603)
Q Consensus 33 rVLLVDDD~~~r~lL~~lL~~~Gy~V~~A 61 (603)
+|||..-.-.+-..|...|...|++|+.+
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~ 30 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEE
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 67777777777777777776667776653
No 444
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=23.89 E-value=3.1e+02 Score=27.53 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A-~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~I 108 (603)
+++|.||.--..-+..+..+....+++++.+ . +.+.+-+..+.....++..+.+ | ++.+-.. +++
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~------~----~~~ll~~---~~~ 72 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG------S----YESLLED---PEI 72 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES------S----HHHHHHC---TTC
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC------C----HHHHhcC---CCC
Confidence 3789999886665556666555557776653 3 4444444443322000111111 2 1222211 233
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHH
Q 007462 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHV 150 (603)
Q Consensus 109 PVImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v 150 (603)
-+|+++. ....+.+..|++.|..=|+-||+ +.++...+++.+
T Consensus 73 D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a 118 (362)
T 1ydw_A 73 DALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDAC 118 (362)
T ss_dssp CEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHH
T ss_pred CEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHH
Confidence 3444443 34567888999999988899996 466766666544
No 445
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=23.89 E-value=2.6e+02 Score=29.51 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=71.2
Q ss_pred hHHhhhc-CCCEEEEEecCHHHHHHHHHHHHhCCCE---EEEEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHH
Q 007462 23 WETFLQR-MALRVLLVEADDSTRQIVTALLRKSSYR---VTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (603)
Q Consensus 23 we~fl~~-m~lrVLLVDDD~~~r~lL~~lL~~~Gy~---V~~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLL 96 (603)
|.+++.+ ...+++||..+...+..|..++...|.. |.... +..+..+++.. .||+|+=... .-|+-++
T Consensus 397 ~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~--~~g~~~l 470 (568)
T 2vsy_A 397 MLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRH----ADLFLDTHPY--NAHTTAS 470 (568)
T ss_dssp HHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGG----CSEEECCSSS--CCSHHHH
T ss_pred HHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhc----CCEEeeCCCC--CCcHHHH
Confidence 5555443 3578888883445567888888877753 55543 44567777754 6887754333 4477888
Q ss_pred HHHHhcccCCCCeEEEEecCC---CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007462 97 TLVMEHEICKNIPVIMMSSQD---SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (603)
Q Consensus 97 r~Lr~~~~~~~IPVImlSa~~---d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~r 152 (603)
+.+. ..+|||.+.+.. +.. .......|..+++.. +.++|...+..++.
T Consensus 471 EAma-----~G~Pvv~~~g~~~~s~~~-~~~l~~~g~~e~v~~--~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 471 DALW-----TGCPVLTTPGETFAARVA-GSLNHHLGLDEMNVA--DDAAFVAKAVALAS 521 (568)
T ss_dssp HHHH-----TTCCEEBCCCSSGGGSHH-HHHHHHHTCGGGBCS--SHHHHHHHHHHHHH
T ss_pred HHHh-----CCCCEEeccCCCchHHHH-HHHHHHCCChhhhcC--CHHHHHHHHHHHhc
Confidence 8774 367998743321 222 111233476666644 88888888877764
No 446
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.70 E-value=3.8e+02 Score=23.88 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=60.1
Q ss_pred CEEEEEec--CHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcccCC
Q 007462 32 LRVLLVEA--DDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHEICK 106 (603)
Q Consensus 32 lrVLLVDD--D~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmD--GleLLr~Lr~~~~~~ 106 (603)
-+|+++.- .......+...|...|..+.... ++.+....+.... .=|+||+ +...|.. -+++++.+++ .
T Consensus 40 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~d~~i~-iS~sG~t~~~~~~~~~ak~----~ 113 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLR-PTDLMIG-VSVWRYLRDTVAALAGAAE----R 113 (187)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCC-TTEEEEE-ECCSSCCHHHHHHHHHHHH----T
T ss_pred CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCC-CCCEEEE-EeCCCCCHHHHHHHHHHHH----C
Confidence 37777754 55666777888888999988887 6666555554332 2365555 4555543 4566666654 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEeCCC
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~ 138 (603)
+++||.+|......... -++-.|.-|.
T Consensus 114 g~~vi~IT~~~~s~l~~-----~ad~~l~~~~ 140 (187)
T 3sho_A 114 GVPTMALTDSSVSPPAR-----IADHVLVAAT 140 (187)
T ss_dssp TCCEEEEESCTTSHHHH-----HCSEEEECCC
T ss_pred CCCEEEEeCCCCCcchh-----hCcEEEEecC
Confidence 68999999876544322 2555565444
No 447
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=23.61 E-value=2e+02 Score=28.23 Aligned_cols=77 Identities=12% Similarity=0.285 Sum_probs=43.8
Q ss_pred CCEEEEEecCHHH--------------HHHHHHHHHhCCCEEEEEC--CHHHHH--HHHhcCCCCceEEEE--eCCCCCC
Q 007462 31 ALRVLLVEADDST--------------RQIVTALLRKSSYRVTAVP--DGLKAW--EVLKGRPRNIDLILT--EVDLPSI 90 (603)
Q Consensus 31 ~lrVLLVDDD~~~--------------r~lL~~lL~~~Gy~V~~A~--dg~eAL--e~L~~~~~~pDLVLl--Dl~MPgm 90 (603)
.+||||..+..-. ...|..+|+..||+|..+. +....+ +.|.. +|+||. |..+..+
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~----~DvvV~~~~~~~~~l 82 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDR----CDVLVWWGHIAHDEV 82 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHT----CSEEEEECSSCGGGS
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhc----CCEEEEecCCCCCcC
Confidence 4789998764321 1256888998999988755 544332 44543 899997 3344334
Q ss_pred CHHHHHHHHHhcccCCCCeEEEE
Q 007462 91 SGFALLTLVMEHEICKNIPVIMM 113 (603)
Q Consensus 91 DGleLLr~Lr~~~~~~~IPVIml 113 (603)
+- +....|++- ......+|.+
T Consensus 83 ~~-~~~~al~~~-V~~GgG~vgi 103 (252)
T 1t0b_A 83 KD-EVVERVHRR-VLEGMGLIVL 103 (252)
T ss_dssp CH-HHHHHHHHH-HHTTCEEEEE
T ss_pred CH-HHHHHHHHH-HHcCCCEEEE
Confidence 32 222233221 1134677776
No 448
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.50 E-value=1.3e+02 Score=28.71 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
+...+...+++.||.+..+. +.. +.++.+.... +|.||+--..+ ..++++.+.. ..+|||++...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~---~~~~~~~~~~----~~iPvV~~~~~ 96 (291)
T 3egc_A 26 VASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG---EHDYLRTELP----KTFPIVAVNRE 96 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS---CCHHHHHSSC----TTSCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC---ChHHHHHhhc----cCCCEEEEecc
Confidence 34455566778899877653 222 2455555544 89888743322 2245555532 47899988765
Q ss_pred C
Q 007462 117 D 117 (603)
Q Consensus 117 ~ 117 (603)
.
T Consensus 97 ~ 97 (291)
T 3egc_A 97 L 97 (291)
T ss_dssp C
T ss_pred c
Confidence 4
No 449
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=23.44 E-value=3.4e+02 Score=22.94 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=43.0
Q ss_pred cCCCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCC
Q 007462 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICK 106 (603)
Q Consensus 29 ~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmD-GleLLr~Lr~~~~~~ 106 (603)
+....|.++|.++.....+. ..|+.++... .-.+.|+.+.- ...|+||+-.. ... -+.++..++.. .
T Consensus 27 ~~g~~V~~id~~~~~~~~~~----~~~~~~~~gd~~~~~~l~~~~~--~~~d~vi~~~~--~~~~n~~~~~~a~~~--~- 95 (141)
T 3llv_A 27 AAGKKVLAVDKSKEKIELLE----DEGFDAVIADPTDESFYRSLDL--EGVSAVLITGS--DDEFNLKILKALRSV--S- 95 (141)
T ss_dssp HTTCCEEEEESCHHHHHHHH----HTTCEEEECCTTCHHHHHHSCC--TTCSEEEECCS--CHHHHHHHHHHHHHH--C-
T ss_pred HCCCeEEEEECCHHHHHHHH----HCCCcEEECCCCCHHHHHhCCc--ccCCEEEEecC--CHHHHHHHHHHHHHh--C-
Confidence 34567777777766543332 2456554432 22333433321 23777776443 211 23333444332 2
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
...||..... .........+|++..+
T Consensus 96 ~~~iia~~~~--~~~~~~l~~~G~~~vi 121 (141)
T 3llv_A 96 DVYAIVRVSS--PKKKEEFEEAGANLVV 121 (141)
T ss_dssp CCCEEEEESC--GGGHHHHHHTTCSEEE
T ss_pred CceEEEEEcC--hhHHHHHHHcCCCEEE
Confidence 3344444432 2333445677875444
No 450
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=23.39 E-value=3e+02 Score=23.33 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=24.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~ 62 (603)
.+|+||.....-+.++..+.+..||+++.+-
T Consensus 5 ~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~ 35 (141)
T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQGKEFHPIAFI 35 (141)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEEE
Confidence 4899999998888877776665688877653
No 451
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=23.37 E-value=2.3e+02 Score=26.44 Aligned_cols=69 Identities=13% Similarity=0.245 Sum_probs=46.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHhcC------------C-CCceEEEEeCCCCCCCHHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VT-AVPDGLKAWEVLKGR------------P-RNIDLILTEVDLPSISGFA 94 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~-~A~dg~eALe~L~~~------------~-~~pDLVLlDl~MPgmDGle 94 (603)
..+|..||-++......+..+...|+. |. ...+..+.+..+... . ..||+||+|...+. -..
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~--~~~ 162 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN--YPN 162 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--HHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--HHH
Confidence 469999999999999999999887762 33 356777766544211 0 24999999965432 234
Q ss_pred HHHHHHh
Q 007462 95 LLTLVME 101 (603)
Q Consensus 95 LLr~Lr~ 101 (603)
+++.+..
T Consensus 163 ~l~~~~~ 169 (239)
T 2hnk_A 163 YYPLILK 169 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 452
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=23.14 E-value=72 Score=32.03 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcccCCCCeEE--EEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 92 GFALLTLVMEHEICKNIPVI--MMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 92 GleLLr~Lr~~~~~~~IPVI--mlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++++++++++. ..+||| ...+-.+.+.+.+++..||+.+++-
T Consensus 195 ~~~~i~~i~~~---~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vG 238 (305)
T 2nv1_A 195 PYELLLQIKKD---GKLPVVNFAAGGVATPADAALMMQLGADGVFVG 238 (305)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred cHHHHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence 46778888653 368988 5556668899999999999998765
No 453
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.14 E-value=3.8e+02 Score=23.77 Aligned_cols=26 Identities=4% Similarity=0.019 Sum_probs=12.1
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEE
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL 134 (603)
...||+.+. +.........+|++..+
T Consensus 132 ~~~ii~~~~--~~~~~~~l~~~G~~~vi 157 (183)
T 3c85_A 132 KGQIAAIAE--YPDQLEGLLESGVDAAF 157 (183)
T ss_dssp CSEEEEEES--SHHHHHHHHHHTCSEEE
T ss_pred CCEEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 444554432 33334444556665443
No 454
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=23.14 E-value=3.1e+02 Score=28.21 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCCC--EEEE-E---CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 43 TRQIVTALLRKSSY--RVTA-V---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 43 ~r~lL~~lL~~~Gy--~V~~-A---~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
..+.++.+-+..|. .+.. + -+..+|+++++... .+++.+++--+|..| ++.+++|++. ..+||+.-=..
T Consensus 183 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~~i~~iEqP~~~~d-~~~~~~l~~~---~~iPIa~dE~~ 257 (372)
T 3tj4_A 183 DIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAK-DLDIYWFEEPLWYDD-VTSHARLARN---TSIPIALGEQL 257 (372)
T ss_dssp HHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTT-TSCEEEEESCSCTTC-HHHHHHHHHH---CSSCEEECTTC
T ss_pred HHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHh-hcCCCEEECCCCchh-HHHHHHHHhh---cCCCEEeCCCc
Confidence 34455555444543 3322 2 27788888877653 478888887666433 6667777654 25888754445
Q ss_pred CCHHHHHHHHHcCCcEEE-eCCCCHHHHH
Q 007462 117 DSVSTVYKCMMRGAADYL-VKPVRRNELR 144 (603)
Q Consensus 117 ~d~~~~~~al~~GA~DyL-~KP~~~~eL~ 144 (603)
.+...+.++++.|+.|++ +|+-..-=|.
T Consensus 258 ~~~~~~~~~i~~~~~d~v~~k~~~~GGit 286 (372)
T 3tj4_A 258 YTVDAFRSFIDAGAVAYVQPDVTRLGGIT 286 (372)
T ss_dssp CSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred cCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 577888899999976665 7887754443
No 455
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=23.07 E-value=2.8e+02 Score=26.60 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 42 ~~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
.+...+...++..||.+..+. +.. +.++.+.... +|.||+--..+.. -.++++.+.+ ..+|||++..
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~-~~~~~~~~~~----~~iPvV~~~~ 91 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRG--VDVLVIIPYNGQV-LSNVVKEAKQ----EGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEEECSSTTS-CHHHHHHHHT----TTCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChhh-hHHHHHHHHH----CCCeEEEECC
Confidence 345566777778899877643 332 3455555443 8888875433321 1356666644 3689998865
Q ss_pred C
Q 007462 116 Q 116 (603)
Q Consensus 116 ~ 116 (603)
.
T Consensus 92 ~ 92 (313)
T 3m9w_A 92 M 92 (313)
T ss_dssp C
T ss_pred c
Confidence 4
No 456
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=23.03 E-value=1.5e+02 Score=30.29 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=42.0
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 94 eLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
+.++++++. .+..+|++-. ++.+.+.+|+.+||+-.+.--+++++|+.++..+
T Consensus 196 ~Av~~ar~~--~p~~kIeVEv--~tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKN--LKNEYIAIEC--DNISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHH--SSSCCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCCEEEEE--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 556666654 3567877644 4578899999999999999999999999988765
No 457
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=22.96 E-value=4.3e+02 Score=27.89 Aligned_cols=80 Identities=13% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCceEEEE--------eCCCCCCCHHHHHHHHHhcccCC-CCeEEEEecCCC-HHHHHHHHHcCCcEEE
Q 007462 65 LKAWEVLKGRPRNIDLILT--------EVDLPSISGFALLTLVMEHEICK-NIPVIMMSSQDS-VSTVYKCMMRGAADYL 134 (603)
Q Consensus 65 ~eALe~L~~~~~~pDLVLl--------Dl~MPgmDGleLLr~Lr~~~~~~-~IPVImlSa~~d-~~~~~~al~~GA~DyL 134 (603)
..|++++.... ..+|||| -..--++..+..|+++ . ++||..-+-... ......|..+||+ +|
T Consensus 174 ~~Ave~i~~~G-n~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~------f~~lpVG~SdHt~G~~~~~~AAvAlGA~-iI 245 (385)
T 1vli_A 174 HEAWRTIRAEG-NNQIAIMHCVAKYPAPPEYSNLSVIPMLAAA------FPEAVIGFSDHSEHPTEAPCAAVRLGAK-LI 245 (385)
T ss_dssp HHHHHHHHTTT-CCCEEEEEECSSSSCCGGGCCTTHHHHHHHH------STTSEEEEEECCSSSSHHHHHHHHTTCS-EE
T ss_pred HHHHHHHHHCC-CCcEEEEeccCCCCCChhhcCHHHHHHHHHH------cCCCCEEeCCCCCCchHHHHHHHHcCCC-EE
Q ss_pred eC---------------CCCHHHHHHHHHHHHH
Q 007462 135 VK---------------PVRRNELRNLWQHVWR 152 (603)
Q Consensus 135 ~K---------------P~~~~eL~~~L~~v~r 152 (603)
-| -+++++|..+++.+..
T Consensus 246 EkHftldra~~G~D~~~SL~P~ef~~lv~~ir~ 278 (385)
T 1vli_A 246 EKHFTIDKNLPGADHSFALNPDELKEMVDGIRK 278 (385)
T ss_dssp EEEBCSCTTSSCSSCTTSBCHHHHHHHHHHHHH
T ss_pred EeCCCccccCCCCchhhhCCHHHHHHHHHHHHH
No 458
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=22.93 E-value=1.5e+02 Score=26.80 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=43.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~-V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
..+|..||-++......+..+...|.. +. ...+..+.+..+ ..+|+|+++..++ +-..+++.+..
T Consensus 64 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~D~i~~~~~~~--~~~~~l~~~~~ 130 (204)
T 3e05_A 64 NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL----PDPDRVFIGGSGG--MLEEIIDAVDR 130 (204)
T ss_dssp TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS----CCCSEEEESCCTT--CHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC----CCCCEEEECCCCc--CHHHHHHHHHH
Confidence 379999999999999999988776642 32 234443332211 2499999997665 55567777654
No 459
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=22.92 E-value=3e+02 Score=26.49 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=47.8
Q ss_pred HHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCC--HHH----HHHHHHcCCcEEEeC-----C
Q 007462 69 EVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDS--VST----VYKCMMRGAADYLVK-----P 137 (603)
Q Consensus 69 e~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d--~~~----~~~al~~GA~DyL~K-----P 137 (603)
+.+.+.. .|+|.+.. | -+++.++++... ..+|||+..+-.. .+. +..++..||+++.+- .
T Consensus 173 ~~a~~~G--ad~i~~~~--~--~~~~~l~~i~~~---~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~ 243 (273)
T 2qjg_A 173 RLGAELG--ADIVKTSY--T--GDIDSFRDVVKG---CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQH 243 (273)
T ss_dssp HHHHHTT--CSEEEECC--C--SSHHHHHHHHHH---CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTS
T ss_pred HHHHHcC--CCEEEECC--C--CCHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCC
Confidence 4444433 89998874 2 468889888754 2689999887763 444 667778999998653 2
Q ss_pred CCHHHHHHHHHHHHH
Q 007462 138 VRRNELRNLWQHVWR 152 (603)
Q Consensus 138 ~~~~eL~~~L~~v~r 152 (603)
-++.+....+..++.
T Consensus 244 ~~~~~~~~~l~~~~~ 258 (273)
T 2qjg_A 244 DDVVGITRAVCKIVH 258 (273)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 244444444444443
No 460
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=22.88 E-value=2.4e+02 Score=26.47 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=45.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHhcCC--CCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSY--RVT-AVPDGLKAWEVLKGRP--RNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~-~A~dg~eALe~L~~~~--~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
.+|..||-++......+..+...|+ .|. ...+..+.+..+.... ..||+||+|... .+-..+++.+.
T Consensus 98 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~ 169 (232)
T 3cbg_A 98 GQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIGL 169 (232)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHHH
Confidence 5899999999999999998887665 233 3567777766554211 249999999652 23345555554
No 461
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=22.86 E-value=2.4e+02 Score=24.46 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=45.4
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy--~V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
+.+...+|..||-++......+..+...+. .+.. ..+..+. +... ..+|+|+++..+. +-..+++.+..
T Consensus 51 l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~~D~v~~~~~~~--~~~~~l~~~~~ 122 (192)
T 1l3i_A 51 LAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA---LCKI-PDIDIAVVGGSGG--ELQEILRIIKD 122 (192)
T ss_dssp HHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH---HTTS-CCEEEEEESCCTT--CHHHHHHHHHH
T ss_pred HHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh---cccC-CCCCEEEECCchH--HHHHHHHHHHH
Confidence 333337999999999999999998887765 3332 4455542 3221 2499999986543 34566777654
No 462
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=22.83 E-value=93 Score=35.09 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=47.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEE--eCCCCCCCH-------HHHHHHHHh
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT--EVDLPSISG-------FALLTLVME 101 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLl--Dl~MPgmDG-------leLLr~Lr~ 101 (603)
.++|||||....+...|..+|+..|+.+..+..... .+ + ..+|.||+ --.-|...+ .++++.+.+
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~-~~-~----~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~ 519 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA-VD-L----ARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLID 519 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC-CC-G----GGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc-cc-c----cCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHH
Confidence 468999999999999999999999998766532111 11 1 13788887 223333333 234444432
Q ss_pred cccCCCCeEEEEe
Q 007462 102 HEICKNIPVIMMS 114 (603)
Q Consensus 102 ~~~~~~IPVImlS 114 (603)
.++||+-|.
T Consensus 520 ----~~iPiLGIC 528 (645)
T 3r75_A 520 ----EGKPFMAVC 528 (645)
T ss_dssp ----HTCCEEEET
T ss_pred ----CCCCEEEEC
Confidence 368998776
No 463
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=22.82 E-value=3.8e+02 Score=24.57 Aligned_cols=83 Identities=11% Similarity=0.008 Sum_probs=49.0
Q ss_pred CCCEEEEEecCHHHHHH----HHHHHHhCCCEEEE-E---CCHHHHHHHHhcC---CCCceEEEEeCCCCCCC-------
Q 007462 30 MALRVLLVEADDSTRQI----VTALLRKSSYRVTA-V---PDGLKAWEVLKGR---PRNIDLILTEVDLPSIS------- 91 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~l----L~~lL~~~Gy~V~~-A---~dg~eALe~L~~~---~~~pDLVLlDl~MPgmD------- 91 (603)
...+|+++.|.-..... +..+|. ++.|+- . .+..+.+..+... ...||+||+-+..-+..
T Consensus 37 ~~~~i~~~GDSit~g~~~~~~~~~~l~--~~~v~n~g~~G~t~~~~~~~~~~~~l~~~~pd~vvi~~G~ND~~~~~~~~~ 114 (232)
T 1es9_A 37 KEPEVVFIGDSLVQLMHQCEIWRELFS--PLHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVT 114 (232)
T ss_dssp CCCSEEEEESHHHHTHHHHSCHHHHTG--GGCEEEEECTTCCHHHHHHHHHTTTTTTCCCSEEEEECCTTCTTSCHHHHH
T ss_pred CCCCEEEEechHhhccCccccHHHHCC--CCceEEeecccccHHHHHHHHhcCccccCCCCEEEEEeecCCCCCCHHHHH
Confidence 35789999998776543 344454 333332 2 2445555555531 13599999977655542
Q ss_pred --HHHHHHHHHhcccCCCCeEEEEecC
Q 007462 92 --GFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 92 --GleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
-..+++.|++. .+..+||+++..
T Consensus 115 ~~l~~~i~~l~~~--~p~~~ii~~~~~ 139 (232)
T 1es9_A 115 GGIKAIVQLVNER--QPQARVVVLGLL 139 (232)
T ss_dssp HHHHHHHHHHHHH--STTCEEEEECCC
T ss_pred HHHHHHHHHHHHH--CCCCeEEEecCC
Confidence 12455556543 357788888764
No 464
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=22.81 E-value=2.1e+02 Score=26.34 Aligned_cols=69 Identities=12% Similarity=-0.027 Sum_probs=45.2
Q ss_pred HhhhcCCCEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 007462 25 TFLQRMALRVLLVEADDSTRQIVTALLRKSSYR--VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (603)
Q Consensus 25 ~fl~~m~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~~-A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~ 101 (603)
..+.+...+|..||-++...+..+..++..|.. +.. ..+..+.+..+ ..||+|+++..+ +-- +++.+..
T Consensus 71 ~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~----~~~D~v~~~~~~---~~~-~l~~~~~ 142 (204)
T 3njr_A 71 VEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL----PLPEAVFIGGGG---SQA-LYDRLWE 142 (204)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS----CCCSEEEECSCC---CHH-HHHHHHH
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC----CCCCEEEECCcc---cHH-HHHHHHH
Confidence 334344679999999999999999998877653 433 34554433221 249999998633 333 6666654
No 465
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=22.76 E-value=89 Score=31.61 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=41.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCH--HHHHHHHHHH
Q 007462 77 NIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR--NELRNLWQHV 150 (603)
Q Consensus 77 ~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~--~eL~~~L~~v 150 (603)
.+|+||+|+ .|. +|...+.+.+... ..+.+.+.+.-|...|++|=|.. .++...+..+
T Consensus 139 ~~DvVLSDM-APn-SG~~~vD~~Rs~~--------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~l 198 (269)
T 2px2_A 139 ISDTLLCDI-GES-SPSAEIEEQRTLR--------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESL 198 (269)
T ss_dssp CCSEEEECC-CCC-CSCHHHHHHHHHH--------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHH
T ss_pred CCCEEEeCC-CCC-CCccHHHHHHHHH--------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHH
Confidence 489999996 455 8887777776532 24566677887877899998887 6666544443
No 466
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=22.73 E-value=1.2e+02 Score=26.93 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred hHHhhhcCCCEEEEEecC---HHHHHHHHHHHHhCCCEEEEECCHH------HHHHHHhcCCCCceEEEEeCCCCCCCHH
Q 007462 23 WETFLQRMALRVLLVEAD---DSTRQIVTALLRKSSYRVTAVPDGL------KAWEVLKGRPRNIDLILTEVDLPSISGF 93 (603)
Q Consensus 23 we~fl~~m~lrVLLVDDD---~~~r~lL~~lL~~~Gy~V~~A~dg~------eALe~L~~~~~~pDLVLlDl~MPgmDGl 93 (603)
.+.|+.+ ..+|.||... ...-..+...|...||+|+.+.... .+..-+.+-...+|++++= .|.-.-.
T Consensus 15 l~~ll~~-p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~--vp~~~~~ 91 (144)
T 2d59_A 15 IREILTR-YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLF--VKPKLTM 91 (144)
T ss_dssp HHHHHHH-CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEEC--SCHHHHH
T ss_pred HHHHHcC-CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEE--eCHHHHH
Confidence 3455532 3588999874 2233344445667899877765321 1112222222346777663 4555556
Q ss_pred HHHHHHHhcccCCCCeEEEEe-cCCCHHHHHHHHHcCCc
Q 007462 94 ALLTLVMEHEICKNIPVIMMS-SQDSVSTVYKCMMRGAA 131 (603)
Q Consensus 94 eLLr~Lr~~~~~~~IPVImlS-a~~d~~~~~~al~~GA~ 131 (603)
++++.+.+. .++.|++. +....+.+..|.+.|+.
T Consensus 92 ~vv~~~~~~----gi~~i~~~~g~~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 92 EYVEQAIKK----GAKVVWFQYNTYNREASKKADEAGLI 126 (144)
T ss_dssp HHHHHHHHH----TCSEEEECTTCCCHHHHHHHHHTTCE
T ss_pred HHHHHHHHc----CCCEEEECCCchHHHHHHHHHHcCCE
Confidence 666665443 23333333 33344444455555553
No 467
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=22.71 E-value=1.1e+02 Score=29.11 Aligned_cols=56 Identities=5% Similarity=0.159 Sum_probs=41.3
Q ss_pred cCCCccchHHhhhcCCCEEEEEecCHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHhcC
Q 007462 16 GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK---SSYRVTAVPDGLKAWEVLKGR 74 (603)
Q Consensus 16 ~~~~~v~we~fl~~m~lrVLLVDDD~~~r~lL~~lL~~---~Gy~V~~A~dg~eALe~L~~~ 74 (603)
+.+-+..|-+.+.-- +|+||+|+-..-.+.+.+|.. .|..+.. -+.++|++.+...
T Consensus 35 HGQVat~W~k~~~~~--~IiVvnD~vA~D~~~k~~lkmA~P~gvk~~i-~sve~ai~~~~~~ 93 (187)
T 3lfj_A 35 HGQVMTRWMKGFPEA--SIVIIDDELAVDEFMKNIYTMAAPPGVKVKV-FGVDAALKEWSQK 93 (187)
T ss_dssp CTTHHHHHHTTCTTC--EEEEECHHHHHCHHHHHHHHHTSCTTCCEEE-ECHHHHHHHHHSB
T ss_pred hhhhhheeccccCCC--EEEEECccccCCHHHHHHHHHhccCCCeEEE-EEHHHHHHHHhCC
Confidence 566677998887544 899999988888888888764 3666543 4678888888653
No 468
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=22.67 E-value=1.9e+02 Score=30.04 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=52.3
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEE-eCCCCHH
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL-VKPVRRN 141 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL-~KP~~~~ 141 (603)
+..+|+++++... .++|.+++--+|. +-++.+++|++. -.+||+.-=...+...+.++++.|+.|++ +||-..-
T Consensus 230 ~~~~ai~~~~~l~-~~~i~~iE~P~~~-~~~~~~~~l~~~---~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G 304 (410)
T 2gl5_A 230 GTNSAIQFAKAIE-KYRIFLYEEPIHP-LNSDNMQKVSRS---TTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304 (410)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECSSCS-SCHHHHHHHHHH---CSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTT
T ss_pred CHHHHHHHHHHHH-hcCCCeEECCCCh-hhHHHHHHHHhh---CCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccC
Confidence 6788887776432 3788888766654 336677777654 26888765455577888899999976665 7887644
Q ss_pred HHH
Q 007462 142 ELR 144 (603)
Q Consensus 142 eL~ 144 (603)
-|.
T Consensus 305 Git 307 (410)
T 2gl5_A 305 GIT 307 (410)
T ss_dssp HHH
T ss_pred CHH
Confidence 443
No 469
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=22.66 E-value=2.1e+02 Score=28.60 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=45.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh--CC----CEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCC-CCH-------HHH
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK--SS----YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISG-------FAL 95 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~--~G----y~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-mDG-------leL 95 (603)
..+|..||=++...+..+..+.. .| -.+. ...|+.+.+... ...||+||+|...|. ++| .++
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~ 177 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---EERYDVVIIDLTDPVGEDNPARLLYTVEF 177 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---CCCEEEEEEECCCCBSTTCGGGGGSSHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc---CCCccEEEECCCCcccccCcchhccHHHH
Confidence 46899999999999988887753 22 1232 356776654432 235999999987665 212 466
Q ss_pred HHHHHhc
Q 007462 96 LTLVMEH 102 (603)
Q Consensus 96 Lr~Lr~~ 102 (603)
++.++..
T Consensus 178 l~~~~~~ 184 (314)
T 1uir_A 178 YRLVKAH 184 (314)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777543
No 470
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=22.65 E-value=1.8e+02 Score=28.51 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=55.0
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHhcC-CCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH
Q 007462 49 ALLRKSSY-RVTAVPDGLKAWEVLKGR-PRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM 126 (603)
Q Consensus 49 ~lL~~~Gy-~V~~A~dg~eALe~L~~~-~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al 126 (603)
..|...+. -|+...+.++++++++.. ...+++|=+.+ -.-++++++++|++.- ++ .+|-.-..-+.+.+..|+
T Consensus 29 ~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~--~t~~a~e~I~~l~~~~--~~-~~iGaGTVlt~~~a~~Ai 103 (232)
T 4e38_A 29 NQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITF--RSDAAVEAIRLLRQAQ--PE-MLIGAGTILNGEQALAAK 103 (232)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEET--TSTTHHHHHHHHHHHC--TT-CEEEEECCCSHHHHHHHH
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHHHHhC--CC-CEEeECCcCCHHHHHHHH
Confidence 34444443 344456666666544311 01255544444 4456899999997642 44 344444456799999999
Q ss_pred HcCCcEEEeCCCCHHHHHHHHH
Q 007462 127 MRGAADYLVKPVRRNELRNLWQ 148 (603)
Q Consensus 127 ~~GA~DyL~KP~~~~eL~~~L~ 148 (603)
.+||+ |++-|-...++....+
T Consensus 104 ~AGA~-fIvsP~~~~~vi~~~~ 124 (232)
T 4e38_A 104 EAGAT-FVVSPGFNPNTVRACQ 124 (232)
T ss_dssp HHTCS-EEECSSCCHHHHHHHH
T ss_pred HcCCC-EEEeCCCCHHHHHHHH
Confidence 99995 5666755555554433
No 471
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=22.63 E-value=1.4e+02 Score=26.16 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=30.9
Q ss_pred CCEEEEEecCHHH----------HHHHHHHHHhCCC--EEEEE----CCHHHHHHHHhcC--CCCceEEEEeCC
Q 007462 31 ALRVLLVEADDST----------RQIVTALLRKSSY--RVTAV----PDGLKAWEVLKGR--PRNIDLILTEVD 86 (603)
Q Consensus 31 ~lrVLLVDDD~~~----------r~lL~~lL~~~Gy--~V~~A----~dg~eALe~L~~~--~~~pDLVLlDl~ 86 (603)
..+|+++.|.-.. ...|...|...|. .|.-. .+..+.+..+... ...||+||+-+.
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G 75 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELG 75 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEee
Confidence 4577888877654 5667777776554 33321 1333344333211 013899998764
No 472
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=22.60 E-value=1.2e+02 Score=30.85 Aligned_cols=106 Identities=12% Similarity=0.106 Sum_probs=60.2
Q ss_pred CCEEEEEecCHHHHH-HHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQ-IVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~-lL~~lL~~~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
++||.||.--..-+. .+..+....+++++.+.+..... +...- ..--+..|+ +.|-.. +++-
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~-~~~~~~~~~-----------~~ll~~---~~vD 67 (362)
T 3fhl_A 5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL--SKERY-PQASIVRSF-----------KELTED---PEID 67 (362)
T ss_dssp CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG--GGTTC-TTSEEESCS-----------HHHHTC---TTCC
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHHhC-CCCceECCH-----------HHHhcC---CCCC
Confidence 479999988766554 33444344478877654332111 22111 011122222 233222 2344
Q ss_pred EEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+|+++. ....+.+..|+++|..=|+-||+ +.++...+++.+.+.
T Consensus 68 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (362)
T 3fhl_A 68 LIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKK 115 (362)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHc
Confidence 444443 33577888999999999999998 678887777665443
No 473
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=22.59 E-value=2.5e+02 Score=32.46 Aligned_cols=108 Identities=7% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCEEEEEecCH----------HHHHHHHHHHHhCCC--EEEEEC---C---HHHHHHHHhcCCCCceEEEEeCCCCCCCH
Q 007462 31 ALRVLLVEADD----------STRQIVTALLRKSSY--RVTAVP---D---GLKAWEVLKGRPRNIDLILTEVDLPSISG 92 (603)
Q Consensus 31 ~lrVLLVDDD~----------~~r~lL~~lL~~~Gy--~V~~A~---d---g~eALe~L~~~~~~pDLVLlDl~MPgmDG 92 (603)
..+++||.+.+ .....+..++...|. .|.... + ..+...++... .|++++=-. ...=|
T Consensus 603 ~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~a---aDvfV~PS~-~Egfg 678 (816)
T 3s28_A 603 LANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDT---KGAFVQPAL-YEAFG 678 (816)
T ss_dssp HCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHT---TCEEEECCS-CBSSC
T ss_pred CeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhc---CeEEEECCC-ccCcc
Confidence 36889998877 356777788877775 354432 2 25566666532 478776432 24457
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v~ 151 (603)
+-+++.+. ..+|||.. .... ..+.+..|..++++.|-+.++|...|..++
T Consensus 679 lvllEAMA-----~G~PVIas-d~GG---~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL 728 (816)
T 3s28_A 679 LTVVEAMT-----CGLPTFAT-CKGG---PAEIIVHGKSGFHIDPYHGDQAADTLADFF 728 (816)
T ss_dssp HHHHHHHH-----TTCCEEEE-SSBT---HHHHCCBTTTBEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHHH-----cCCCEEEe-CCCC---hHHHHccCCcEEEeCCCCHHHHHHHHHHHH
Confidence 78888874 36788863 3333 334456788999999999999999997776
No 474
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=22.51 E-value=3.4e+02 Score=27.03 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=49.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC-EEEEEC---CHHHHHHHHhcCCCCceEEEEeCCCC-----------CCCH-HHH
Q 007462 32 LRVLLVEADDSTRQIVTALLRKSSY-RVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLP-----------SISG-FAL 95 (603)
Q Consensus 32 lrVLLVDDD~~~r~lL~~lL~~~Gy-~V~~A~---dg~eALe~L~~~~~~pDLVLlDl~MP-----------gmDG-leL 95 (603)
|+|||..-.-.+-..|...|...|+ +|+.+. +....-++++. +|+||-=.... ...| ..+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~----~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l 76 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLK----ADFIVHLAGVNRPEHDKEFSLGNVSYLDHV 76 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHH----CSEEEECCCSBCTTCSTTCSSSCCBHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhcc----CCEEEECCcCCCCCCHHHHHHHHHHHHHHH
Confidence 4899999988888888888877788 888754 34444445542 79988633221 2233 345
Q ss_pred HHHHHhcccCCCCeEEEEecC
Q 007462 96 LTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 96 Lr~Lr~~~~~~~IPVImlSa~ 116 (603)
++.+++.. ....||++|+.
T Consensus 77 ~~a~~~~~--~~~~~v~~Ss~ 95 (369)
T 3st7_A 77 LDILTRNT--KKPAILLSSSI 95 (369)
T ss_dssp HHHHTTCS--SCCEEEEEEEG
T ss_pred HHHHHHhC--CCCeEEEeCch
Confidence 66554432 12368888764
No 475
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=22.49 E-value=1.3e+02 Score=29.64 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=53.4
Q ss_pred CHHHHHHHHhcCCCCceEEEEeCCC----CCCC-HHHHHHHHHhcccCCCCeEEE-EecCCCHHHHHHHHHcCCcEEEeC
Q 007462 63 DGLKAWEVLKGRPRNIDLILTEVDL----PSIS-GFALLTLVMEHEICKNIPVIM-MSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~M----PgmD-GleLLr~Lr~~~~~~~IPVIm-lSa~~d~~~~~~al~~GA~DyL~K 136 (603)
+..++++.+.... .|.+-+|++. |.+. |..+++.||.. ++++|+.+ +--.+-...+..+.++||+.+.+-
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~--~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDY--GITAGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHH--TCCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHh--CCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 4567788777643 6667666643 3333 88999999864 34567654 333334557778889999887766
Q ss_pred CCCHHHHHHHHHHH
Q 007462 137 PVRRNELRNLWQHV 150 (603)
Q Consensus 137 P~~~~eL~~~L~~v 150 (603)
......+...++.+
T Consensus 117 ~Ea~~~~~~~i~~i 130 (246)
T 3inp_A 117 PEASEHIDRSLQLI 130 (246)
T ss_dssp GGGCSCHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 44334555555554
No 476
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=22.46 E-value=1.2e+02 Score=29.92 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=42.7
Q ss_pred chHHhhhcC---CCEEEEEecCHHHHHHHHHHHHhCCCEEEEECC----HHHHHHHHhcCC-----CCceEEEEeCC
Q 007462 22 KWETFLQRM---ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD----GLKAWEVLKGRP-----RNIDLILTEVD 86 (603)
Q Consensus 22 ~we~fl~~m---~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~d----g~eALe~L~~~~-----~~pDLVLlDl~ 86 (603)
.|++++..| +++|||..-.-.+-..|...|...|++|+.+.. ..+.+..+.... ..+.++..|+.
T Consensus 13 ~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 89 (351)
T 3ruf_A 13 RYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR 89 (351)
T ss_dssp HHHHHHHHHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTT
T ss_pred HHhhHHhhCCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCC
Confidence 456554444 479999999999998888888888999887542 334444443210 12566666664
No 477
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=22.42 E-value=4.5e+02 Score=24.73 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=64.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 007462 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV--------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A--------~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~ 102 (603)
..+||++--+.. +..|...|+..|++|..+ ....+.++.+... .+|+|++= .-++.+.+-.+.
T Consensus 110 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~--~~d~v~ft----S~s~v~~~~~~~-- 180 (229)
T 3p9z_A 110 KKSVLYLRAKEI-VSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPK--EKSILIFT----AISHAKAFLHYF-- 180 (229)
T ss_dssp TCEEEEEEESSC-SSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCC--TTCEEEEC----SHHHHHHHHHHS--
T ss_pred CCEEEEECCccc-hHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcC--CCeEEEEE----CHHHHHHHHHHh--
Confidence 358888877653 677888898888765432 2334555666543 38888762 123333332221
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007462 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (603)
Q Consensus 103 ~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~KP~~~~eL~~~L~~v 150 (603)
....+++++.+. ......+.+.|..-++.+-.+.+.|..++..+
T Consensus 181 ~~~~~~~~~aIG----~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 181 EFLENYTAISIG----NTTALYLQEQGIPSYIAKKPSLEACLELALSL 224 (229)
T ss_dssp CCCTTCEEEESS----HHHHHHHHHTTCCEEECSSSSHHHHHHHHHHT
T ss_pred CcccCCEEEEEC----HHHHHHHHHcCCCceeCCCCCHHHHHHHHHHH
Confidence 122345565443 44555566778766677777888888887654
No 478
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=22.41 E-value=8.2e+02 Score=27.08 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=70.9
Q ss_pred hHHh--hhcCCCEEEEEecC----HHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHhcCCCCceEEEEeCC-------
Q 007462 23 WETF--LQRMALRVLLVEAD----DSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD------- 86 (603)
Q Consensus 23 we~f--l~~m~lrVLLVDDD----~~~r~lL~~lL~~~-Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl~------- 86 (603)
||+. |.+...-||+||-- ..+...++.+-... ...|+. +.+.+.|..+++.. .|.|.+.+.
T Consensus 283 ~eR~~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aG---AD~vkVGiGpGSiCtT 359 (556)
T 4af0_A 283 KDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAG---ADGLRIGMGSGSICIT 359 (556)
T ss_dssp HHHHHHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTBCC
T ss_pred HHHHHHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcC---CCEEeecCCCCccccc
Confidence 4444 34456788999853 44444554443332 345554 77999999988864 688887653
Q ss_pred -------CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 87 -------LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 87 -------MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
.|....+--+...... ..+|||.=-+......+.+|+.+||+-.++-
T Consensus 360 r~v~GvG~PQ~tAi~~~a~~a~~---~~vpvIADGGI~~sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 360 QEVMAVGRPQGTAVYAVAEFASR---FGIPCIADGGIGNIGHIAKALALGASAVMMG 413 (556)
T ss_dssp TTTCCSCCCHHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred ccccCCCCcHHHHHHHHHHHHHH---cCCCEEecCCcCcchHHHHHhhcCCCEEEEc
Confidence 3333333222222221 3689998888889999999999999999865
No 479
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=22.30 E-value=2.4e+02 Score=27.60 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=53.9
Q ss_pred HhCCCEEE-EECCHHHHHHHHhcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc
Q 007462 52 RKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR 128 (603)
Q Consensus 52 ~~~Gy~V~-~A~dg~eALe~L~~~~~~pDLVLlDl~MPg-mD-GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~ 128 (603)
+..|..+. .+.+..|++..++.. +|+|=+ .|. .- |.++++.|+. ..+++|++..-+- +.+.+.+.+.+
T Consensus 124 ~~~gi~~ipGv~TptEi~~A~~~G---ad~vK~---FPa~~~gG~~~lkal~~--p~p~ip~~ptGGI-~~~n~~~~l~a 194 (232)
T 4e38_A 124 QEIGIDIVPGVNNPSTVEAALEMG---LTTLKF---FPAEASGGISMVKSLVG--PYGDIRLMPTGGI-TPSNIDNYLAI 194 (232)
T ss_dssp HHHTCEEECEECSHHHHHHHHHTT---CCEEEE---CSTTTTTHHHHHHHHHT--TCTTCEEEEBSSC-CTTTHHHHHTS
T ss_pred HHcCCCEEcCCCCHHHHHHHHHcC---CCEEEE---CcCccccCHHHHHHHHH--HhcCCCeeeEcCC-CHHHHHHHHHC
Confidence 33466543 478999999998753 788876 563 33 8999999975 3468998864444 57888899999
Q ss_pred CCcEEE
Q 007462 129 GAADYL 134 (603)
Q Consensus 129 GA~DyL 134 (603)
|+...+
T Consensus 195 Ga~~~v 200 (232)
T 4e38_A 195 PQVLAC 200 (232)
T ss_dssp TTBCCE
T ss_pred CCeEEE
Confidence 986554
No 480
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=22.25 E-value=1.3e+02 Score=28.67 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHH
Q 007462 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVS 120 (603)
Q Consensus 78 pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~ 120 (603)
|||||...... .-+.+++|.+. .+|++++.......
T Consensus 60 PDlIi~~~~~~---~~~~~~~L~~~----gipvv~~~~~~~~~ 95 (255)
T 3md9_A 60 PTMLLVSELAQ---PSLVLTQIASS----GVNVVTVPGQTTPE 95 (255)
T ss_dssp CSEEEEETTCS---CHHHHHHHHHT----TCEEEEECCCCSHH
T ss_pred CCEEEEcCCcC---chhHHHHHHHc----CCcEEEeCCCCCHH
Confidence 99999875431 13456666432 57999886433333
No 481
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=22.17 E-value=1.7e+02 Score=30.57 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=39.9
Q ss_pred CEEEEEecCHHHHH--HHHHHHHhC-CCEEEEEC---------CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 007462 32 LRVLLVEADDSTRQ--IVTALLRKS-SYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (603)
Q Consensus 32 lrVLLVDDD~~~r~--lL~~lL~~~-Gy~V~~A~---------dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~L 99 (603)
-|+|||-|+..... .+..+...+ |+++..+. ...++++.+++.. +|+||- +.|..-+++.+.+
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGsviD~AK~i 125 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQK--VTFLLA---VGGGSVLDGTKFI 125 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHHHHHHT--CCEEEE---EESHHHHHHHHHH
T ss_pred CEEEEEECCchhhhccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHHH
Confidence 58999988765444 344443322 77765543 2344666666544 898873 4566677777776
Q ss_pred Hh
Q 007462 100 ME 101 (603)
Q Consensus 100 r~ 101 (603)
..
T Consensus 126 A~ 127 (408)
T 1oj7_A 126 AA 127 (408)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 482
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=22.14 E-value=75 Score=30.89 Aligned_cols=79 Identities=8% Similarity=0.114 Sum_probs=38.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHhcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCC
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICK 106 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~--V~~A~dg~eALe~L~~~~~~pDLVLlDl~MP-gmDGleLLr~Lr~~~~~~ 106 (603)
..++|||+--....|.....++...|.. ...+.+..+.++.+.. .+|+|++|-..- ..+-+++|+.|.. .
T Consensus 55 ~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~---~~dvViIDEaQF~~~~~V~~l~~l~~----~ 127 (214)
T 2j9r_A 55 AKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITE---EMDVIAIDEVQFFDGDIVEVVQVLAN----R 127 (214)
T ss_dssp TTCCEEEEECC-----------------CCEEECSSGGGGGGGCCS---SCCEEEECCGGGSCTTHHHHHHHHHH----T
T ss_pred CCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHhh----C
Confidence 3578999864444454444455555543 3445566666655542 389999996332 3456778877743 3
Q ss_pred CCeEEEEecC
Q 007462 107 NIPVIMMSSQ 116 (603)
Q Consensus 107 ~IPVImlSa~ 116 (603)
+++||+ ++.
T Consensus 128 ~~~Vi~-~Gl 136 (214)
T 2j9r_A 128 GYRVIV-AGL 136 (214)
T ss_dssp TCEEEE-EEC
T ss_pred CCEEEE-Eec
Confidence 677765 443
No 483
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=22.13 E-value=3.2e+02 Score=25.84 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=55.3
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHhcCCCCceEEEEeC----CCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 007462 47 VTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEV----DLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (603)
Q Consensus 47 L~~lL~~~Gy~V~~--A~dg~eALe~L~~~~~~pDLVLlDl----~MPg-mDGleLLr~Lr~~~~~~~IPVImlSa~~d~ 119 (603)
.-..|+..|+.+.. +..|...+..|.... ||.|=+|- .+.. .....+++.|.......++.| +..+..+.
T Consensus 148 ~l~~L~~~G~~ialDdfG~g~s~l~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~l~~i~~~a~~l~~~v-iaeGVEt~ 224 (250)
T 4f3h_A 148 FLASVSAMGCKVGLEQFGSGLDSFQLLAHFQ--PAFLKLDRSITGDIASARESQEKIREITSRAQPTGILT-VAEFVADA 224 (250)
T ss_dssp HHHHHHTTTCEEEEEEETSSTHHHHHHTTSC--CSEEEECHHHHTTTTTCSHHHHHHHHTHHHHHHHTCEE-EECCCCCH
T ss_pred HHHHHHHCCCEEEEeCCCCCchHHHHHhhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCEE-EEeccCCH
Confidence 34456778997654 788889999998755 99999993 2222 235556665543222124444 46778888
Q ss_pred HHHHHHHHcCCcE
Q 007462 120 STVYKCMMRGAAD 132 (603)
Q Consensus 120 ~~~~~al~~GA~D 132 (603)
+....+..+|++.
T Consensus 225 ~~~~~l~~~G~~~ 237 (250)
T 4f3h_A 225 QSMSSFFTAGVDY 237 (250)
T ss_dssp HHHHHHHHHTCSE
T ss_pred HHHHHHHHcCCCE
Confidence 8888889999764
No 484
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=22.09 E-value=90 Score=29.68 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=11.5
Q ss_pred hhcCCCEEEEEecCH
Q 007462 27 LQRMALRVLLVEADD 41 (603)
Q Consensus 27 l~~m~lrVLLVDDD~ 41 (603)
+.+...+||+||-|+
T Consensus 27 la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 27 LAQLGHDVTIVDADI 41 (263)
T ss_dssp HHHTTCCEEEEECCC
T ss_pred HHhCCCcEEEEECCC
Confidence 444567999999886
No 485
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=22.09 E-value=34 Score=34.72 Aligned_cols=106 Identities=12% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCCEEEEEecCHHHHHHHHH-HHH-hCCCEEEEECCH--HHHHHHHhcCCCCceE-EEEeCCCCCCCHHHHHHHHHhccc
Q 007462 30 MALRVLLVEADDSTRQIVTA-LLR-KSSYRVTAVPDG--LKAWEVLKGRPRNIDL-ILTEVDLPSISGFALLTLVMEHEI 104 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~-lL~-~~Gy~V~~A~dg--~eALe~L~~~~~~pDL-VLlDl~MPgmDGleLLr~Lr~~~~ 104 (603)
|+++|.||.--..-+..... +|. ..+++++.+.+. ..+ +..... +.+ +..|+ +.+-..
T Consensus 1 m~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~---~~~~~~~~~-----------~~ll~~-- 63 (345)
T 3f4l_A 1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY---SHIHFTSDL-----------DEVLND-- 63 (345)
T ss_dssp -CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-GGSGGG---TTCEEESCT-----------HHHHTC--
T ss_pred CceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-HHHHhc---CCCceECCH-----------HHHhcC--
Confidence 45788999887766543333 444 347787765433 222 222211 122 22221 222222
Q ss_pred CCCCeEEEEecC--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 105 CKNIPVIMMSSQ--DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 105 ~~~IPVImlSa~--~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+++-+|+++.. ...+.+..|++.|..=++.||+ +.++...++..+.+.
T Consensus 64 -~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (345)
T 3f4l_A 64 -PDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSK 115 (345)
T ss_dssp -TTEEEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEcCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 24445555443 3577888999999988899998 677877777655443
No 486
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=21.97 E-value=3.1e+02 Score=28.23 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=58.5
Q ss_pred EEEEEecCHHHH----HHHHHHHHhCCC--EEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 007462 33 RVLLVEADDSTR----QIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (603)
Q Consensus 33 rVLLVDDD~~~r----~lL~~lL~~~Gy--~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~ 106 (603)
-|||-|.+-... ..++.+-+..+. -.+.+.+.+++.+.++.. .|+|.+|-. +- +.++++.+. ..+
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~aG---aD~I~LDn~----~~-~~l~~av~~-l~~ 274 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISAG---ADIIMLDNF----SL-EMMREAVKI-NAG 274 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTT---CSEEEEESC----CH-HHHHHHHHH-HTT
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHcC---CCEEEECCC----CH-HHHHHHHHH-hCC
Confidence 467776653322 233333233333 345789999999998853 799999952 32 334444322 112
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 107 ~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
+ ..|..|+--+.+.+......|++.|-+
T Consensus 275 ~-v~ieaSGGIt~~~I~~~a~tGVD~isv 302 (320)
T 3paj_A 275 R-AALENSGNITLDNLKECAETGVDYISV 302 (320)
T ss_dssp S-SEEEEESSCCHHHHHHHHTTTCSEEEC
T ss_pred C-CeEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3 456678888999999999999976654
No 487
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=21.95 E-value=3.2e+02 Score=26.72 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 42 ~~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
.+...+...+.+.||.+..+. +.. +.++.+.... +|-||+--..... +++..+.. ..+|||++..
T Consensus 79 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~~~---~~~~~l~~----~~iPvV~~~~ 149 (339)
T 3h5o_A 79 ETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHR--PDGVLITGLSHAE---PFERILSQ----HALPVVYMMD 149 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTC--CSEEEEECSCCCT---THHHHHHH----TTCCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCC--CCEEEEeCCCCCH---HHHHHHhc----CCCCEEEEee
Confidence 455667777888999877653 222 3455555443 8877764322222 45555543 3689998854
No 488
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=21.94 E-value=2.7e+02 Score=27.61 Aligned_cols=72 Identities=10% Similarity=0.036 Sum_probs=44.2
Q ss_pred CEEEEEec-CHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 007462 32 LRVLLVEA-DDS---TRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (603)
Q Consensus 32 lrVLLVDD-D~~---~r~lL~~lL~~~Gy~V~~---A----~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr 100 (603)
-+|.||-+ +.. ....++..|+..|.+|+. . .+....+..+.... +|+||+.. ...+...++++++
T Consensus 143 ~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~--~d~v~~~~--~~~~~~~~~~~~~ 218 (379)
T 3n0w_A 143 KTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKASG--AQLIVSTS--GGAANINIMKQAR 218 (379)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHHHT--CSEEEECC--CHHHHHHHHHHHH
T ss_pred cEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHHCC--CCEEEEec--ccchHHHHHHHHH
Confidence 35655544 433 345566677777887653 2 35666777776544 89999853 2345667788887
Q ss_pred hcccCCCCe
Q 007462 101 EHEICKNIP 109 (603)
Q Consensus 101 ~~~~~~~IP 109 (603)
+... ..|
T Consensus 219 ~~g~--~~~ 225 (379)
T 3n0w_A 219 EFGL--PSK 225 (379)
T ss_dssp HTTC--SCS
T ss_pred HcCC--CCC
Confidence 6543 445
No 489
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=21.91 E-value=3.2e+02 Score=25.57 Aligned_cols=67 Identities=9% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 007462 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (603)
Q Consensus 42 ~~r~lL~~lL~~~Gy~V~~A~---dg~---eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa 115 (603)
.+...+...+++.||++.... +.. +.++.+.... +|.||+--.. .+. +.++.+.+. ..+|||++..
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgii~~~~~--~~~-~~~~~l~~~---~~iPvV~~~~ 109 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLR--CDAIMIYPRF--LSV-DEIDDIIDA---HSQPIMVLNR 109 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTT--CSEEEEECSS--SCH-HHHHHHHHT---CSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEecCC--CCh-HHHHHHHhc---CCCCEEEEcc
Confidence 345556666778899887654 222 3455554443 8887764322 222 455666441 3689998865
Q ss_pred C
Q 007462 116 Q 116 (603)
Q Consensus 116 ~ 116 (603)
.
T Consensus 110 ~ 110 (296)
T 3brq_A 110 R 110 (296)
T ss_dssp C
T ss_pred c
Confidence 3
No 490
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=21.83 E-value=85 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=16.5
Q ss_pred EEEE-ec-CHHHHHHHHHHHHhCCCEEEEE
Q 007462 34 VLLV-EA-DDSTRQIVTALLRKSSYRVTAV 61 (603)
Q Consensus 34 VLLV-DD-D~~~r~lL~~lL~~~Gy~V~~A 61 (603)
|||- .| +......+...|...||+++..
T Consensus 27 vliSv~d~dK~~l~~~a~~l~~lGf~i~AT 56 (143)
T 2yvq_A 27 ILIGIQQSFRPRFLGVAEQLHNEGFKLFAT 56 (143)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTCEEEEE
T ss_pred EEEEecccchHHHHHHHHHHHHCCCEEEEC
Confidence 5553 33 3444444566777889987654
No 491
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=21.83 E-value=2.5e+02 Score=28.02 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=63.1
Q ss_pred HHhhhcC---CCEE-EEEecCHHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHhcCCCCceEEEEeCCCCCCC-----
Q 007462 24 ETFLQRM---ALRV-LLVEADDSTRQIVTALLRKSSYRVT-AVP--DGLKAWEVLKGRPRNIDLILTEVDLPSIS----- 91 (603)
Q Consensus 24 e~fl~~m---~lrV-LLVDDD~~~r~lL~~lL~~~Gy~V~-~A~--dg~eALe~L~~~~~~pDLVLlDl~MPgmD----- 91 (603)
|+|..+. .... +|+|=-......+...++..|..++ .+. +..+-++.+.... .+.|-+ +.+.+..
T Consensus 115 ~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~-vs~~GvTG~~~~ 191 (271)
T 3nav_A 115 DDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYL-LSRAGVTGAETK 191 (271)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEE-CCCC--------
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEE-EeccCCCCcccC
Confidence 4454443 2344 4444444556677788888888644 232 3344444443333 333433 1122222
Q ss_pred ----HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 92 ----GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 92 ----GleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
-.+++++|++. .++||++=-+-.+.+.+.+++..||++.++-
T Consensus 192 ~~~~~~~~v~~vr~~---~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 192 ANMPVHALLERLQQF---DAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp CCHHHHHHHHHHHHT---TCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred CchhHHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 24678888764 2689887666678888888999999999976
No 492
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=21.79 E-value=2.1e+02 Score=28.92 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCCEEEEEe----cCHHHHHHHHHHHHhCCCEEEEECCH-----------------------------------------
Q 007462 30 MALRVLLVE----ADDSTRQIVTALLRKSSYRVTAVPDG----------------------------------------- 64 (603)
Q Consensus 30 m~lrVLLVD----DD~~~r~lL~~lL~~~Gy~V~~A~dg----------------------------------------- 64 (603)
|+.+|||+- -+-.-...|...|++.|++|..+.+.
T Consensus 1 M~~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKS 80 (365)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHHHH
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEe
Q 007462 65 -LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (603)
Q Consensus 65 -~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~ 135 (603)
.++++++++.. ||+||.+-..+..-+.-..+.+ .+|+|+.-...-.....+.+..-++.++.
T Consensus 81 ~~~~~~~l~~~~--PDvVi~~g~~~s~p~~laA~~~-------~iP~vihe~n~~~G~~nr~l~~~a~~v~~ 143 (365)
T 3s2u_A 81 LFQALRVIRQLR--PVCVLGLGGYVTGPGGLAARLN-------GVPLVIHEQNAVAGTANRSLAPIARRVCE 143 (365)
T ss_dssp HHHHHHHHHHHC--CSEEEECSSSTHHHHHHHHHHT-------TCCEEEEECSSSCCHHHHHHGGGCSEEEE
T ss_pred HHHHHHHHHhcC--CCEEEEcCCcchHHHHHHHHHc-------CCCEEEEecchhhhhHHHhhccccceeee
No 493
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=21.78 E-value=88 Score=31.44 Aligned_cols=106 Identities=12% Similarity=0.229 Sum_probs=57.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH------HHHHHHHhcCCCCce-EEEEeCCCCCCCHHHHHHHHHhc
Q 007462 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNID-LILTEVDLPSISGFALLTLVMEH 102 (603)
Q Consensus 30 m~lrVLLVDDD~~~r~lL~~lL~~~Gy~V~~A~dg------~eALe~L~~~~~~pD-LVLlDl~MPgmDGleLLr~Lr~~ 102 (603)
|++||.||.--......+..+ ..+++++.+.+. +.+-+.+++.. ++ -+.. |--++|..
T Consensus 1 M~~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~ll~~---- 65 (337)
T 3ip3_A 1 MSLKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAISEMN--IKPKKYN-------NWWEMLEK---- 65 (337)
T ss_dssp -CEEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHTTT--CCCEECS-------SHHHHHHH----
T ss_pred CceEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHHcC--CCCcccC-------CHHHHhcC----
Confidence 567888888643333444443 556777764432 23333333221 21 1222 22233332
Q ss_pred ccCCCCeEEEEecC--CCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHHh
Q 007462 103 EICKNIPVIMMSSQ--DSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWRR 153 (603)
Q Consensus 103 ~~~~~IPVImlSa~--~d~~~~~~al~~GA~DyL~KP~~--~~eL~~~L~~v~rr 153 (603)
+++-+|+++.. ...+.+..|+++|..=|+-||+. .++...+++.+-+.
T Consensus 66 ---~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 117 (337)
T 3ip3_A 66 ---EKPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKV 117 (337)
T ss_dssp ---HCCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 12333444332 35677889999999999999984 56777776655443
No 494
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=21.73 E-value=3.1e+02 Score=27.64 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=59.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 007462 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (603)
Q Consensus 31 ~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IP 109 (603)
+++|.||.--..-+......|.. .+++++.+.+....- ..+... .--+..|+ +.|-.. +++-
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~--~~~~~~~~-----------~~ll~~---~~vD 67 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRDFP--DAEVVHEL-----------EEITND---PAIE 67 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHHCT--TSEEESST-----------HHHHTC---TTCC
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCC--CCceECCH-----------HHHhcC---CCCC
Confidence 37999999876665534444544 477877654332211 111111 11122232 222221 2344
Q ss_pred EEEEec--CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHh
Q 007462 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (603)
Q Consensus 110 VImlSa--~~d~~~~~~al~~GA~DyL~KP~--~~~eL~~~L~~v~rr 153 (603)
+|+++. ....+.+..|+++|..=|+-||+ +.++...++..+.+.
T Consensus 68 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~ 115 (358)
T 3gdo_A 68 LVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEK 115 (358)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 444443 34678888999999999999995 577777776655443
No 495
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.71 E-value=2e+02 Score=27.47 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCEEEEEC--C---HHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 44 RQIVTALLRKSSYRVTAVP--D---GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 44 r~lL~~lL~~~Gy~V~~A~--d---g~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
...+...+++.||.+..+. + ..+.++.+... .+|-||+--..+ +. +.++.+.. .+|||++...
T Consensus 30 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~~-~~~~~~~~-----~iPvV~i~~~ 97 (289)
T 3k9c_A 30 VEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRE--RCEAAILLGTRF--DT-DELGALAD-----RVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTT--TEEEEEEETCCC--CH-HHHHHHHT-----TSCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhC--CCCEEEEECCCC--CH-HHHHHHHc-----CCCEEEEcCC
Confidence 3445555678899876642 1 45566766554 389888753222 22 56666632 6899988754
No 496
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=21.59 E-value=47 Score=31.88 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=33.5
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 007462 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (603)
Q Consensus 93 leLLr~Lr~~~~~~~IPVImlSa~~d~~~~~~al~~GA~DyL~K 136 (603)
++++++|+ . ..+|||+.....+.+.+.+++..||+..++-
T Consensus 63 ~~~i~~i~-~---~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg 102 (241)
T 1qo2_A 63 LPVLEKLS-E---FAEHIQIGGGIRSLDYAEKLRKLGYRRQIVS 102 (241)
T ss_dssp HHHHHHGG-G---GGGGEEEESSCCSHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHH-h---cCCcEEEECCCCCHHHHHHHHHCCCCEEEEC
Confidence 67777776 3 3799999999999999999999999988763
No 497
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=21.57 E-value=1.7e+02 Score=26.44 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=38.1
Q ss_pred hhcCCCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHhcCCCCceEEEEeCCCCCCCH---HHHHHHHHhc
Q 007462 27 LQRMALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG---FALLTLVMEH 102 (603)
Q Consensus 27 l~~m~lrVLLVDDD~~~r~lL~~lL~~-~Gy~V~~A~dg~eALe~L~~~~~~pDLVLlDl~MPgmDG---leLLr~Lr~~ 102 (603)
+.+...+|..||-++......+. .. ....+. ..+..+. +.. ..+|+|++...+....- ..+++.+...
T Consensus 64 l~~~~~~v~~~D~s~~~~~~a~~--~~~~~~~~~-~~d~~~~---~~~--~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~ 135 (218)
T 3ou2_A 64 LSGLADRVTALDGSAEMIAEAGR--HGLDNVEFR-QQDLFDW---TPD--RQWDAVFFAHWLAHVPDDRFEAFWESVRSA 135 (218)
T ss_dssp HHHHSSEEEEEESCHHHHHHHGG--GCCTTEEEE-ECCTTSC---CCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEeCCHHHHHHHHh--cCCCCeEEE-ecccccC---CCC--CceeEEEEechhhcCCHHHHHHHHHHHHHH
Confidence 33335678888877776666655 11 112222 2333221 122 35999999877666554 5677777543
No 498
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.54 E-value=95 Score=28.49 Aligned_cols=55 Identities=20% Similarity=0.415 Sum_probs=33.6
Q ss_pred cCCCEEEEEecC-----HHHHHHHHHHHHhCCCEEEE---ECCHHHHH-HHHhcCCC--CceEEEE
Q 007462 29 RMALRVLLVEAD-----DSTRQIVTALLRKSSYRVTA---VPDGLKAW-EVLKGRPR--NIDLILT 83 (603)
Q Consensus 29 ~m~lrVLLVDDD-----~~~r~lL~~lL~~~Gy~V~~---A~dg~eAL-e~L~~~~~--~pDLVLl 83 (603)
++..-||.+.|+ ..+...|..+|+..|+++.. +.|-.+++ +.|++... ..||||+
T Consensus 13 ~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 78 (169)
T 1y5e_A 13 EVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLT 78 (169)
T ss_dssp CCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEE
T ss_pred CCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 455567777764 46778899999999997643 55544443 23322111 3677776
No 499
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=21.53 E-value=1.1e+02 Score=28.18 Aligned_cols=84 Identities=11% Similarity=0.123 Sum_probs=45.8
Q ss_pred CCEEEEEecCHHH----------HHHHHHHHHhCCCEEEEE-----------------C---CHHHHHHHHhcC--CCCc
Q 007462 31 ALRVLLVEADDST----------RQIVTALLRKSSYRVTAV-----------------P---DGLKAWEVLKGR--PRNI 78 (603)
Q Consensus 31 ~lrVLLVDDD~~~----------r~lL~~lL~~~Gy~V~~A-----------------~---dg~eALe~L~~~--~~~p 78 (603)
.++|+++.|.-.. ...|...|...++.+..+ - +..+.+..+... ...|
T Consensus 5 ~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~~~p 84 (215)
T 2vpt_A 5 TIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTHNP 84 (215)
T ss_dssp EEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHHCC
T ss_pred ceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhccCC
Confidence 4688888887654 456777777667655332 1 123333332210 0238
Q ss_pred eEEEEeCCCCCC---------CHHHHHHHHHhcccCCCCeEEEEecC
Q 007462 79 DLILTEVDLPSI---------SGFALLTLVMEHEICKNIPVIMMSSQ 116 (603)
Q Consensus 79 DLVLlDl~MPgm---------DGleLLr~Lr~~~~~~~IPVImlSa~ 116 (603)
|+||+.+..-+. +--.+++.|++. .+.++||+++..
T Consensus 85 d~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~--~p~~~ii~~~~~ 129 (215)
T 2vpt_A 85 DVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTV--KPNVTLFVADYY 129 (215)
T ss_dssp SEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHH--CTTCEEEEECCC
T ss_pred CEEEEEccccccCCCCChhHHHHHHHHHHHHHh--CCCCEEEEEeCC
Confidence 999987632211 112455666553 357778877643
No 500
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=21.47 E-value=4.1e+02 Score=26.33 Aligned_cols=89 Identities=12% Similarity=0.181 Sum_probs=38.2
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHhcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 007462 34 VLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIM 112 (603)
Q Consensus 34 VLLVDDD~~~r~lL~~lL~~~Gy~V~~A~-dg~eALe~L~~~~~~pDLVLlDl~MPgmDGleLLr~Lr~~~~~~~IPVIm 112 (603)
|++||.|+.... + +..|+.++..+ .-.+.|+.+. -...|.||+-..- +..-+..+..+++ ..++++||+
T Consensus 140 v~vid~~~~~~~-~----~~~~~~~i~gd~~~~~~L~~a~--i~~a~~vi~~~~~-d~~n~~~~~~ar~--~~~~~~iia 209 (336)
T 1lnq_A 140 FVLAEDENVRKK-V----LRSGANFVHGDPTRVSDLEKAN--VRGARAVIVDLES-DSETIHCILGIRK--IDESVRIIA 209 (336)
T ss_dssp EEEESCGGGHHH-H----HHTTCEEEESCTTSHHHHHHTC--STTEEEEEECCSS-HHHHHHHHHHHHT--TCTTSEEEE
T ss_pred EEEEeCChhhhh-H----HhCCcEEEEeCCCCHHHHHhcC--hhhccEEEEcCCc-cHHHHHHHHHHHH--HCCCCeEEE
Confidence 566665554433 2 23455544432 2222333222 1236666664321 1122333333433 235556665
Q ss_pred EecCCCHHHHHHHHHcCCcEEE
Q 007462 113 MSSQDSVSTVYKCMMRGAADYL 134 (603)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL 134 (603)
....... ......+|++..+
T Consensus 210 r~~~~~~--~~~l~~~G~d~vi 229 (336)
T 1lnq_A 210 EAERYEN--IEQLRMAGADQVI 229 (336)
T ss_dssp ECSSGGG--HHHHHHTTCSEEE
T ss_pred EECCHHH--HHHHHHcCCCEEE
Confidence 5543322 2334467776554
Done!