Query 007463
Match_columns 603
No_of_seqs 516 out of 3562
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 23:56:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 5.7E-68 1.2E-72 566.8 43.8 461 51-603 397-876 (890)
2 PRK10490 sensor protein KdpD; 100.0 1.8E-51 3.9E-56 476.2 48.2 462 50-603 399-879 (895)
3 PRK13837 two-component VirA-li 100.0 3.6E-38 7.9E-43 366.1 46.8 428 113-603 237-672 (828)
4 COG5002 VicK Signal transducti 100.0 8.2E-41 1.8E-45 325.2 16.9 215 367-603 222-445 (459)
5 TIGR02916 PEP_his_kin putative 100.0 7.8E-37 1.7E-41 347.9 50.0 437 76-603 224-677 (679)
6 PRK11091 aerobic respiration c 100.0 3.8E-35 8.3E-40 340.2 43.1 218 365-603 278-502 (779)
7 PRK09303 adaptive-response sen 100.0 2.7E-36 5.9E-41 320.2 30.1 228 355-603 136-374 (380)
8 PRK10618 phosphotransfer inter 100.0 1.8E-36 3.9E-41 348.1 29.4 233 352-603 432-669 (894)
9 COG4251 Bacteriophytochrome (l 100.0 1.9E-33 4.2E-38 292.7 37.4 221 356-603 510-738 (750)
10 PRK10841 hybrid sensory kinase 100.0 4.4E-35 9.6E-40 341.2 28.4 229 353-603 430-664 (924)
11 PRK11107 hybrid sensory histid 100.0 7.8E-34 1.7E-38 335.5 34.1 241 346-603 269-515 (919)
12 TIGR02956 TMAO_torS TMAO reduc 100.0 7.4E-34 1.6E-38 337.4 32.4 228 355-603 449-680 (968)
13 PRK15347 two component system 100.0 5E-34 1.1E-38 337.2 30.2 236 345-603 373-611 (921)
14 PRK11466 hybrid sensory histid 100.0 4.7E-33 1E-37 328.6 30.1 241 340-603 414-659 (914)
15 PRK11006 phoR phosphate regulo 100.0 2.3E-32 4.9E-37 295.5 25.2 212 368-603 202-420 (430)
16 PRK10364 sensor protein ZraS; 100.0 1.1E-28 2.4E-33 268.9 44.6 206 369-603 236-445 (457)
17 TIGR02938 nifL_nitrog nitrogen 100.0 1E-30 2.2E-35 286.6 27.8 209 370-603 276-491 (494)
18 COG3852 NtrB Signal transducti 100.0 7.9E-31 1.7E-35 252.5 23.0 213 368-602 130-350 (363)
19 PRK09959 hybrid sensory histid 100.0 1.1E-30 2.4E-35 316.4 28.5 231 356-603 698-933 (1197)
20 COG4191 Signal transduction hi 100.0 6.7E-30 1.5E-34 267.3 29.0 220 357-603 369-598 (603)
21 PRK10815 sensor protein PhoQ; 100.0 3.6E-30 7.7E-35 281.4 26.4 227 349-603 245-475 (485)
22 PRK10604 sensor protein RstB; 100.0 7.6E-30 1.6E-34 275.9 25.9 223 350-603 192-420 (433)
23 PRK10755 sensor protein BasS/P 100.0 2.2E-29 4.8E-34 265.4 26.1 205 371-603 138-347 (356)
24 PRK10337 sensor protein QseC; 100.0 3.8E-29 8.2E-34 271.9 28.6 231 347-603 214-448 (449)
25 PRK10549 signal transduction h 100.0 3E-29 6.4E-34 274.0 26.6 233 347-603 217-455 (466)
26 TIGR03785 marine_sort_HK prote 100.0 7E-29 1.5E-33 281.8 27.4 233 347-603 462-701 (703)
27 PRK09835 sensor kinase CusS; P 100.0 3.2E-26 6.9E-31 251.1 46.7 232 348-603 240-477 (482)
28 TIGR02966 phoR_proteo phosphat 100.0 1.1E-28 2.4E-33 256.2 24.9 212 369-603 113-332 (333)
29 TIGR01386 cztS_silS_copS heavy 100.0 4.3E-28 9.2E-33 263.8 27.0 232 347-603 218-455 (457)
30 PRK11073 glnL nitrogen regulat 100.0 1.3E-27 2.9E-32 250.9 26.3 212 369-603 129-344 (348)
31 PRK09467 envZ osmolarity senso 100.0 4.2E-27 9.1E-32 254.8 26.1 221 347-603 206-430 (435)
32 PRK11100 sensory histidine kin 100.0 6.6E-27 1.4E-31 255.6 27.2 232 347-603 234-470 (475)
33 PRK09470 cpxA two-component se 100.0 1.9E-26 4E-31 251.4 27.3 229 347-603 220-454 (461)
34 COG5000 NtrY Signal transducti 99.9 5.2E-25 1.1E-29 229.6 31.8 203 369-602 485-704 (712)
35 PRK11360 sensory histidine kin 99.9 7.3E-26 1.6E-30 254.4 27.4 207 369-603 389-598 (607)
36 COG0642 BaeS Signal transducti 99.9 1.2E-24 2.6E-29 224.3 27.1 209 369-603 114-326 (336)
37 PRK13557 histidine kinase; Pro 99.9 5.2E-25 1.1E-29 244.7 25.1 222 369-603 162-391 (540)
38 KOG0519 Sensory transduction h 99.9 1.2E-27 2.6E-32 271.9 2.3 570 23-592 25-617 (786)
39 PRK13560 hypothetical protein; 99.9 1.1E-24 2.3E-29 254.0 24.2 204 358-603 593-800 (807)
40 PRK11644 sensory histidine kin 99.9 4.8E-23 1.1E-27 225.3 29.8 244 314-603 245-491 (495)
41 PRK10600 nitrate/nitrite senso 99.9 7.3E-21 1.6E-25 213.0 46.2 339 158-603 208-553 (569)
42 COG4192 Signal transduction hi 99.9 6.1E-23 1.3E-27 206.6 25.7 204 371-602 452-662 (673)
43 PRK11086 sensory histidine kin 99.9 4.2E-22 9E-27 221.7 19.7 186 371-603 340-532 (542)
44 PRK15053 dpiB sensor histidine 99.9 1.2E-21 2.6E-26 218.5 22.8 186 373-603 341-536 (545)
45 COG3290 CitA Signal transducti 99.9 4.1E-18 8.9E-23 178.3 40.3 188 371-603 334-528 (537)
46 PRK13559 hypothetical protein; 99.8 5.4E-20 1.2E-24 194.3 18.8 180 370-603 170-356 (361)
47 PRK10935 nitrate/nitrite senso 99.8 2.3E-16 4.9E-21 176.8 40.4 217 316-603 329-556 (565)
48 PF02518 HATPase_c: Histidine 99.7 4.1E-18 8.9E-23 148.2 7.9 102 481-603 1-107 (111)
49 COG3850 NarQ Signal transducti 99.7 3.4E-13 7.4E-18 140.4 36.8 324 153-603 225-565 (574)
50 PRK10547 chemotaxis protein Ch 99.6 4.7E-15 1E-19 164.7 17.2 137 443-603 343-520 (670)
51 COG3851 UhpB Signal transducti 99.4 1.1E-10 2.3E-15 115.7 27.3 237 316-603 248-491 (497)
52 KOG0519 Sensory transduction h 99.4 8.2E-14 1.8E-18 159.2 5.1 227 373-602 224-484 (786)
53 PRK15429 formate hydrogenlyase 99.4 7.1E-11 1.5E-15 134.7 25.5 191 155-358 170-366 (686)
54 PF00512 HisKA: His Kinase A ( 99.3 3.1E-12 6.8E-17 100.6 7.4 66 369-434 1-68 (68)
55 PRK04184 DNA topoisomerase VI 99.3 3.2E-12 7E-17 137.4 9.5 106 479-602 30-148 (535)
56 smart00387 HATPase_c Histidine 99.3 1.3E-11 2.9E-16 105.6 10.8 102 481-603 1-107 (111)
57 COG3920 Signal transduction hi 99.3 1E-09 2.2E-14 106.8 24.1 189 369-603 18-212 (221)
58 COG0643 CheA Chemotaxis protei 99.3 2.5E-10 5.3E-15 127.8 20.4 138 442-603 389-570 (716)
59 COG3275 LytS Putative regulato 99.3 1.8E-07 3.8E-12 96.8 38.6 308 189-602 227-547 (557)
60 PRK14868 DNA topoisomerase VI 99.2 4.3E-11 9.4E-16 131.2 11.5 109 461-592 21-141 (795)
61 COG4585 Signal transduction hi 99.2 3.7E-09 8.1E-14 111.8 25.7 117 449-603 243-362 (365)
62 cd00075 HATPase_c Histidine ki 99.2 7.6E-11 1.7E-15 99.2 9.5 97 486-603 1-102 (103)
63 PRK11061 fused phosphoenolpyru 99.2 1.9E-09 4.1E-14 122.7 23.3 160 170-342 3-163 (748)
64 TIGR01925 spIIAB anti-sigma F 99.2 1.5E-10 3.3E-15 104.5 10.6 95 481-603 35-135 (137)
65 TIGR01052 top6b DNA topoisomer 99.1 1.1E-10 2.5E-15 124.3 9.6 94 479-592 22-124 (488)
66 PRK14867 DNA topoisomerase VI 99.1 4.5E-10 9.8E-15 123.2 10.3 104 479-602 27-145 (659)
67 TIGR01817 nifA Nif-specific re 99.0 2.4E-08 5.2E-13 110.9 20.3 157 169-340 4-163 (534)
68 COG2972 Predicted signal trans 99.0 6.9E-08 1.5E-12 105.1 23.4 88 486-602 351-448 (456)
69 PF13492 GAF_3: GAF domain; PD 99.0 1.6E-08 3.5E-13 89.4 14.2 129 184-335 1-129 (129)
70 PRK03660 anti-sigma F factor; 99.0 3.4E-09 7.3E-14 96.8 10.0 95 481-603 35-135 (146)
71 PF01590 GAF: GAF domain; Int 98.9 1E-08 2.2E-13 93.7 11.0 137 184-333 1-154 (154)
72 PRK04069 serine-protein kinase 98.8 1.6E-08 3.6E-13 93.8 10.3 96 482-602 39-139 (161)
73 COG4564 Signal transduction hi 98.8 3.9E-05 8.5E-10 76.0 33.6 190 370-602 251-443 (459)
74 PRK05022 anaerobic nitric oxid 98.8 2.7E-07 5.8E-12 101.7 19.3 171 170-356 4-179 (509)
75 smart00065 GAF Domain present 98.8 2.5E-07 5.3E-12 82.0 15.3 144 184-341 1-147 (149)
76 PRK15429 formate hydrogenlyase 98.7 3.3E-07 7.1E-12 104.9 18.4 171 169-355 8-183 (686)
77 PF13185 GAF_2: GAF domain; PD 98.7 2.5E-07 5.4E-12 83.9 13.2 137 183-334 2-148 (148)
78 TIGR01924 rsbW_low_gc serine-p 98.7 1.3E-07 2.8E-12 87.5 9.7 118 447-602 17-139 (159)
79 smart00388 HisKA His Kinase A 98.6 1.1E-07 2.4E-12 73.1 7.7 64 370-433 2-65 (66)
80 COG3605 PtsP Signal transducti 98.6 5.2E-06 1.1E-10 87.9 21.7 155 172-339 5-160 (756)
81 KOG0787 Dehydrogenase kinase [ 98.4 2.6E-06 5.6E-11 85.8 11.5 175 405-602 174-376 (414)
82 PF14501 HATPase_c_5: GHKL dom 98.4 2.2E-06 4.7E-11 72.8 8.8 81 482-592 2-85 (100)
83 COG3604 FhlA Transcriptional r 98.3 2.9E-05 6.3E-10 81.6 16.9 178 169-359 33-214 (550)
84 PF13581 HATPase_c_2: Histidin 98.3 4.6E-06 9.9E-11 73.8 9.6 93 483-603 29-124 (125)
85 cd00082 HisKA Histidine Kinase 98.3 4.7E-06 1E-10 63.3 8.1 62 369-430 3-65 (65)
86 COG2203 FhlA FOG: GAF domain [ 98.0 1.2E-05 2.6E-10 73.6 6.1 159 170-341 4-170 (175)
87 TIGR00585 mutl DNA mismatch re 97.8 4.2E-05 9.1E-10 79.0 7.2 59 484-566 21-79 (312)
88 COG1389 DNA topoisomerase VI, 97.8 5.2E-05 1.1E-09 78.4 7.3 88 483-590 34-129 (538)
89 PRK13558 bacterio-opsin activa 97.8 0.0016 3.5E-08 74.7 20.2 148 171-337 289-439 (665)
90 COG2172 RsbW Anti-sigma regula 97.2 0.0011 2.4E-08 60.1 7.1 82 481-586 36-121 (146)
91 PRK00095 mutL DNA mismatch rep 96.9 0.002 4.3E-08 72.7 7.0 57 484-564 21-77 (617)
92 PF11849 DUF3369: Domain of un 96.8 0.13 2.9E-06 48.2 17.4 152 157-343 9-172 (174)
93 COG1956 GAF domain-containing 96.5 0.13 2.9E-06 46.4 14.8 120 190-332 38-159 (163)
94 PF13493 DUF4118: Domain of un 96.3 0.0099 2.2E-07 50.6 6.3 81 54-134 3-98 (105)
95 COG5385 Uncharacterized protei 96.2 0.33 7.1E-06 43.9 15.3 179 373-592 18-198 (214)
96 PF04340 DUF484: Protein of un 96.2 0.023 4.9E-07 55.8 9.1 163 148-336 52-223 (225)
97 PF10090 DUF2328: Uncharacteri 96.0 0.29 6.4E-06 46.1 14.9 176 386-602 2-180 (182)
98 PRK10963 hypothetical protein; 95.5 0.84 1.8E-05 44.6 16.4 162 147-335 48-218 (223)
99 PF13589 HATPase_c_3: Histidin 95.4 0.0042 9E-08 55.9 -0.1 55 487-563 4-58 (137)
100 PRK05559 DNA topoisomerase IV 95.1 0.027 5.8E-07 63.6 5.2 79 482-584 34-129 (631)
101 PRK05644 gyrB DNA gyrase subun 94.8 0.046 9.9E-07 61.8 6.2 80 482-585 34-130 (638)
102 COG0323 MutL DNA mismatch repa 94.3 0.035 7.6E-07 62.7 3.7 54 487-564 25-78 (638)
103 PRK14083 HSP90 family protein; 94.1 0.035 7.5E-07 62.0 3.1 79 479-582 20-116 (601)
104 TIGR01059 gyrB DNA gyrase, B s 93.8 0.11 2.4E-06 59.0 6.4 80 482-585 27-123 (654)
105 PRK05218 heat shock protein 90 92.6 0.088 1.9E-06 59.3 3.2 21 540-560 74-94 (613)
106 TIGR01055 parE_Gneg DNA topois 92.1 0.13 2.8E-06 58.0 3.9 82 480-585 25-123 (625)
107 PTZ00272 heat shock protein 83 92.1 0.085 1.8E-06 59.8 2.2 49 490-559 30-92 (701)
108 PF07568 HisKA_2: Histidine ki 91.6 2 4.4E-05 34.1 9.1 72 377-457 2-73 (76)
109 COG3159 Uncharacterized protei 91.6 8.6 0.00019 36.6 14.5 161 148-335 50-215 (218)
110 COG5381 Uncharacterized protei 91.1 0.36 7.7E-06 42.6 4.6 82 486-592 64-159 (184)
111 smart00433 TOP2c Topoisomerase 90.4 0.19 4.1E-06 56.5 3.0 73 487-583 3-92 (594)
112 COG0326 HtpG Molecular chapero 87.6 0.53 1.2E-05 52.0 3.8 82 479-584 24-133 (623)
113 PRK14939 gyrB DNA gyrase subun 87.3 0.6 1.3E-05 53.5 4.2 47 484-554 36-84 (756)
114 COG4251 Bacteriophytochrome (l 85.5 68 0.0015 35.9 18.5 46 164-209 322-367 (750)
115 PF14689 SPOB_a: Sensor_kinase 84.9 3.4 7.4E-05 31.4 6.0 45 373-421 15-59 (62)
116 PHA02569 39 DNA topoisomerase 84.7 0.5 1.1E-05 53.0 1.9 15 541-555 81-95 (602)
117 TIGR01058 parE_Gpos DNA topois 83.7 0.98 2.1E-05 51.1 3.6 80 482-585 31-127 (637)
118 PTZ00130 heat shock protein 90 80.5 1 2.2E-05 51.7 2.3 19 540-558 136-154 (814)
119 PTZ00108 DNA topoisomerase 2-l 79.3 2.5 5.4E-05 51.6 5.1 45 541-585 96-155 (1388)
120 PLN03237 DNA topoisomerase 2; 79.0 2.4 5.2E-05 51.7 4.8 76 486-584 78-171 (1465)
121 KOG1979 DNA mismatch repair pr 78.4 2.4 5.2E-05 46.1 4.1 53 488-564 30-82 (694)
122 PF07851 TMPIT: TMPIT-like pro 77.5 47 0.001 34.3 12.8 93 340-434 4-96 (330)
123 PLN03128 DNA topoisomerase 2; 76.1 4.4 9.5E-05 48.8 5.8 46 486-554 53-101 (1135)
124 PF12805 FUSC-like: FUSC-like 74.2 78 0.0017 32.0 13.8 84 54-137 3-98 (284)
125 KOG1978 DNA mismatch repair pr 72.7 4.5 9.7E-05 45.0 4.4 49 487-559 22-70 (672)
126 TIGR02851 spore_V_T stage V sp 71.5 91 0.002 29.3 13.4 124 183-331 52-177 (180)
127 COG0187 GyrB Type IIA topoisom 69.4 2.3 4.9E-05 47.0 1.3 78 484-585 35-129 (635)
128 KOG1977 DNA mismatch repair pr 69.0 6.1 0.00013 44.0 4.4 54 485-563 21-74 (1142)
129 PF10066 DUF2304: Uncharacteri 68.3 78 0.0017 27.3 10.9 11 152-162 95-105 (115)
130 PF13748 ABC_membrane_3: ABC t 60.6 1.1E+02 0.0024 30.0 10.8 53 144-196 162-216 (237)
131 PRK11677 hypothetical protein; 58.6 1E+02 0.0022 27.4 9.4 23 119-141 4-26 (134)
132 PF06210 DUF1003: Protein of u 54.1 1.4E+02 0.003 25.5 11.5 12 119-130 38-49 (108)
133 PRK11644 sensory histidine kin 52.6 2.8E+02 0.0061 30.6 14.0 16 502-517 437-452 (495)
134 PTZ00109 DNA gyrase subunit b; 51.7 3.2 7E-05 48.1 -1.4 48 483-554 127-176 (903)
135 PF06018 CodY: CodY GAF-like d 51.6 91 0.002 29.2 8.3 53 272-338 106-158 (177)
136 PF07536 HWE_HK: HWE histidine 50.3 96 0.0021 25.0 7.4 69 377-457 2-70 (83)
137 COG3114 CcmD Heme exporter pro 50.0 68 0.0015 24.4 5.7 21 141-161 38-58 (67)
138 COG3071 HemY Uncharacterized e 47.8 2.5E+02 0.0054 29.7 11.5 40 372-411 250-289 (400)
139 PRK04158 transcriptional repre 44.1 3.4E+02 0.0073 27.0 13.0 53 271-337 107-159 (256)
140 PRK04654 sec-independent trans 43.0 56 0.0012 31.2 5.5 14 376-389 72-85 (214)
141 PF06305 DUF1049: Protein of u 42.6 64 0.0014 24.5 5.1 9 153-161 51-59 (68)
142 PRK00888 ftsB cell division pr 41.1 2.2E+02 0.0048 24.1 9.6 18 175-192 53-70 (105)
143 PF11152 DUF2930: Protein of u 40.9 83 0.0018 29.9 6.4 72 240-328 122-193 (195)
144 PF14965 BRI3BP: Negative regu 37.6 3.2E+02 0.007 25.4 9.3 29 139-167 148-176 (177)
145 PF11833 DUF3353: Protein of u 37.6 2.3E+02 0.0051 26.9 9.0 60 66-128 128-191 (194)
146 PF06295 DUF1043: Protein of u 36.9 2.9E+02 0.0063 24.3 8.9 21 122-142 3-23 (128)
147 cd07955 Anticodon_Ia_Cys_like 36.4 93 0.002 24.9 5.2 29 367-395 27-57 (81)
148 COG0813 DeoD Purine-nucleoside 33.0 40 0.00086 32.5 2.9 53 478-553 18-70 (236)
149 PF07344 Amastin: Amastin surf 32.9 3.8E+02 0.0082 24.3 9.6 37 32-69 39-77 (155)
150 PF07213 DAP10: DAP10 membrane 32.2 1.1E+02 0.0024 24.4 4.7 34 22-60 18-51 (79)
151 PF07332 DUF1469: Protein of u 31.1 3.4E+02 0.0073 23.2 8.4 11 153-163 109-119 (121)
152 PF11872 DUF3392: Protein of u 30.7 2.8E+02 0.0062 23.6 7.3 25 77-101 47-71 (106)
153 PF14248 DUF4345: Domain of un 30.7 3.6E+02 0.0077 23.3 8.7 50 55-105 50-99 (124)
154 COG4839 FtsL Protein required 30.0 3.7E+02 0.008 23.3 9.7 22 171-192 82-103 (120)
155 COG3166 PilN Tfp pilus assembl 29.3 5.2E+02 0.011 24.8 13.6 69 142-211 54-122 (206)
156 COG3835 CdaR Sugar diacid util 28.9 3.1E+02 0.0067 28.5 8.6 95 272-388 70-164 (376)
157 PF06103 DUF948: Bacterial pro 28.6 3.2E+02 0.0069 22.1 10.0 35 129-163 12-46 (90)
158 PF07492 Trehalase_Ca-bi: Neut 28.6 40 0.00087 21.4 1.4 11 539-549 14-24 (30)
159 TIGR00799 mtp Golgi 4-transmem 28.0 5.8E+02 0.013 24.9 11.6 93 38-138 49-157 (258)
160 TIGR00219 mreC rod shape-deter 27.8 3.1E+02 0.0066 27.8 8.6 30 334-363 67-96 (283)
161 PF11118 DUF2627: Protein of u 27.1 2.9E+02 0.0064 21.9 6.2 46 54-99 4-60 (77)
162 TIGR00634 recN DNA repair prot 26.6 9.4E+02 0.02 26.9 15.1 36 316-351 144-179 (563)
163 KOG0355 DNA topoisomerase type 26.1 1.2E+02 0.0025 35.1 5.5 49 484-555 52-102 (842)
164 PF08066 PMC2NT: PMC2NT (NUC01 25.7 3.6E+02 0.0078 22.0 7.2 55 406-461 25-79 (91)
165 TIGR00400 mgtE Mg2+ transporte 25.1 5.9E+02 0.013 27.7 10.8 84 48-131 358-446 (449)
166 PF04995 CcmD: Heme exporter p 24.9 2.4E+02 0.0051 19.8 5.1 8 117-124 11-18 (46)
167 COG4191 Signal transduction hi 24.5 9.2E+02 0.02 27.1 11.8 86 114-201 295-380 (603)
168 PF12794 MscS_TM: Mechanosensi 24.3 8.2E+02 0.018 25.4 14.9 17 182-198 294-310 (340)
169 TIGR01667 YCCS_YHJK integral m 24.1 1.2E+03 0.025 27.2 15.1 33 46-78 53-85 (701)
170 PTZ00201 amastin surface glyco 23.1 6.2E+02 0.013 24.0 9.0 38 32-69 51-89 (192)
171 COG2820 Udp Uridine phosphoryl 22.9 1.6E+02 0.0035 28.9 5.1 52 478-553 21-72 (248)
172 PF10856 DUF2678: Protein of u 22.6 1.3E+02 0.0029 25.8 3.9 18 82-99 62-79 (118)
173 PRK09776 putative diguanylate 22.5 5.7E+02 0.012 31.0 11.3 26 370-395 658-683 (1092)
174 KOG3088 Secretory carrier memb 22.2 1E+02 0.0022 31.0 3.6 20 152-171 73-92 (313)
175 TIGR01620 hyp_HI0043 conserved 22.0 8.5E+02 0.018 24.8 11.0 17 176-192 123-139 (289)
176 PF14770 TMEM18: Transmembrane 21.8 5.5E+02 0.012 22.5 11.7 38 53-90 16-53 (123)
177 COG0215 CysS Cysteinyl-tRNA sy 21.1 1E+03 0.023 25.9 11.2 29 367-396 341-369 (464)
178 PF03729 DUF308: Short repeat 20.3 3.7E+02 0.0081 20.0 7.2 28 75-102 19-46 (72)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-68 Score=566.85 Aligned_cols=461 Identities=14% Similarity=0.152 Sum_probs=400.2
Q ss_pred hhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHhHHhh-----------cCcchHHHHHHHHHHHH
Q 007463 51 SDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSFQLMLSLTVFKI 118 (603)
Q Consensus 51 sd~~ia~a~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 118 (603)
.|++++++++++.+.+++++... +.+|..|+|++||++++...|.++++++ |.+|.|+|. +.++.++
T Consensus 397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~-v~d~~y~ 475 (890)
T COG2205 397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFA-VSDPQYL 475 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEE-EecCchH
Confidence 68999999999999999988766 8999999999999999999999988866 377777665 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHh
Q 007463 119 LTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSN 198 (603)
Q Consensus 119 lt~lv~~~~ai~l~~li~~~l~~~~~e~~l~~~~~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~ 198 (603)
+|+.||+++|++++.| +.++++|....++|+++++.|+++++.++.+.+.++++.++..++.+
T Consensus 476 vTf~vml~vai~t~~L-----------------t~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~ 538 (890)
T COG2205 476 VTFAVMLAVALLTGNL-----------------TARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS 538 (890)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEE
Q 007463 199 TLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIR 278 (603)
Q Consensus 199 ~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 278 (603)
+++. ++++++|++++.. .+...|+- +...+..+.+|......+++.+++++....+.+
T Consensus 539 ~~~~-~v~i~l~~~~~~~------------------~~~~~~~~---l~~~d~aaa~W~~~~~~~AG~gTdTlpg~~~~~ 596 (890)
T COG2205 539 LLNQ-RVVILLPDDNGKL------------------QPLGNPDG---LSADDRAAAQWAFENGKPAGAGTDTLPGAKYLY 596 (890)
T ss_pred HhCC-ceEEEEecCCccc------------------ccccCCcc---ccHHHHHHhhchhhCCCccccCCCCCCCCceeE
Confidence 9999 6899999877422 11111110 111122233455556678888889999999999
Q ss_pred ecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 279 MPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQ 358 (603)
Q Consensus 279 ~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~ 358 (603)
+|+...+.. .|++.+.+.......+++..++.++++|+|.|+++..+.++ .++
T Consensus 597 lPl~~~~~~-------------~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~--------------~~~ 649 (890)
T COG2205 597 LPLKSGGKV-------------LGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEE--------------AEQ 649 (890)
T ss_pred eecccCCce-------------EEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 998744444 55667666656668999999999999999999999998887 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhc--cCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCC
Q 007463 359 AQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQD--VNLNSD-QRMIVETMMKSSNVLSTLISDVMDNSPKDSGR 435 (603)
Q Consensus 359 a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~--~~~~~~-~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~ 435 (603)
++.++ +.++.|+.|++++||||||||++|.|.++.|.. ..++++ +.+.+..|.+++++|.++|+|||||+|+++|.
T Consensus 650 a~l~~-e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~ 728 (890)
T COG2205 650 ARLAA-ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGG 728 (890)
T ss_pred HHHHH-HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 44433 338899999999999999999999999999985 445665 67899999999999999999999999999999
Q ss_pred ccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeec
Q 007463 436 FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSEN 515 (603)
Q Consensus 436 ~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~ 515 (603)
++++++|..+.+++.+++..++.....+ .+.++++.++| .+.+|..+++||+.||++||+||+|++++|.|.+....
T Consensus 729 ~~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~ 805 (890)
T COG2205 729 VNLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER 805 (890)
T ss_pred cccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec
Confidence 9999999999999999999998877655 58888899999 89999999999999999999999999999999999886
Q ss_pred CCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc-CCCCCCCchHHHHHHHHHHhCCeec--
Q 007463 516 GSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQVRISIKF-- 592 (603)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~-- 592 (603)
++ ++|+|.|+|||||+++.++||++|+|..+ +...|+||||+|||.||++|||+|+
T Consensus 806 ~~---------------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~ 864 (890)
T COG2205 806 EN---------------------VVFSVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAE 864 (890)
T ss_pred ce---------------------EEEEEEeCCCCCChhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHcCCeEEEE
Confidence 54 99999999999999999999999999443 4578999999999999999999999
Q ss_pred -cCCcceEEEEC
Q 007463 593 -PAYVFTCFRVT 603 (603)
Q Consensus 593 -~~g~Gt~f~it 603 (603)
.+++|++|+|+
T Consensus 865 ~~~~gGa~f~~~ 876 (890)
T COG2205 865 NNPGGGAIFVFT 876 (890)
T ss_pred EcCCCceEEEEE
Confidence 77889999984
No 2
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=1.8e-51 Score=476.24 Aligned_cols=462 Identities=14% Similarity=0.126 Sum_probs=369.3
Q ss_pred hhhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHhHHhh----------c-CcchHHHHHHHHHHH
Q 007463 50 VSDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT----------Y-GPHSFQLMLSLTVFK 117 (603)
Q Consensus 50 ~sd~~ia~a~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~i~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~ 117 (603)
+.+|+++++.+++.+.+.++++.. +.+|..|+|+++|++++..+|..+++++ | .||+|+|. +.++.+
T Consensus 399 ~~~~~~a~~~~~~~t~l~~~l~~~l~~~ni~mlyll~Vll~A~~~G~~pai~aavls~l~~nfFF~~P~~Tf~-v~~~~~ 477 (895)
T PRK10490 399 IQGCLVAIALCALITLIAMQWLPAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVASFDLFFVAPRGTLA-VSDVQY 477 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHheeCCCceEEE-EcCccc
Confidence 568999999999999998877654 7899999999999999998888887766 3 67777665 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 007463 118 ILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELS 197 (603)
Q Consensus 118 ~lt~lv~~~~ai~l~~li~~~l~~~~~e~~l~~~~~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~ 197 (603)
++|++++++++++++.+ +.+++++....++++++.+.|+++++.|+.+.+.+++++.+.+.+.
T Consensus 478 ~~t~~v~l~va~v~~~l-----------------~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~ 540 (895)
T PRK10490 478 LLTFAVMLTVGLVIGNL-----------------TAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLA 540 (895)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEE
Q 007463 198 NTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAI 277 (603)
Q Consensus 198 ~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 277 (603)
+.++.+ +++|++++++......... ...+.+.....++...+. +.+.+..+.+...+.
T Consensus 541 ~~~~~~-~~l~l~~~~g~~~~~~~~~---------~~~~~~~~~~~w~~~~~~------------~~g~~~~tl~~~~~~ 598 (895)
T PRK10490 541 STFQAR-SQLLLPDDNGKLQPLTHDQ---------GMTPWDDAIARWSFDKGQ------------PAGAGTDTLPGVPYQ 598 (895)
T ss_pred HhhCCC-EEEEEEcCCCccccccccc---------cccchHHHHHHHHHhcCC------------ccccCcCcCCCCceE
Confidence 999985 6788887654321110000 001111111112222211 222233345566788
Q ss_pred EecceeccccCCCcchhhhhcceeeEEEecCCC-CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 278 RMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ-FRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRAL 356 (603)
Q Consensus 278 ~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~-~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L 356 (603)
++|+...++. +|++++.... ...|++++.++++.++.|++.++++..+.++.++
T Consensus 599 ~lPl~~~~~~-------------~Gvl~l~~~~~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~------------ 653 (895)
T PRK10490 599 ILPLKSAQKT-------------YGLLAVEPGNLRQLMIPEQQRLLETFTLLIANALERLTLTASEEQ------------ 653 (895)
T ss_pred EEEEEECCEE-------------EEEEEEecCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 9998865554 5566665543 4578999999999999999999988775433111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCC
Q 007463 357 QQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN--LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (603)
Q Consensus 357 ~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~--~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g 434 (603)
++. ..+.++.+++|++.+||||||||++|.|+++++.... ...+..+.++.+.+...++.+++++++++++++.+
T Consensus 654 --~~l-~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~ 730 (895)
T PRK10490 654 --ARL-ASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSG 730 (895)
T ss_pred --HHH-HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 111 1122567789999999999999999999999886432 22334567899999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEee
Q 007463 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (603)
Q Consensus 435 ~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~ 514 (603)
...++.+++++.+++++++..++.....++ +.++++++.| .+.+|+.++.||+.||++||+||+++++.|.|++...
T Consensus 731 ~~~l~~~~~~L~eli~~~l~~l~~~~~~~~--i~l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~ 807 (895)
T PRK10490 731 GFNLRKEWLTLEEVVGSALQMLEPGLSGHP--INLSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE 807 (895)
T ss_pred CCcccccccCHHHHHHHHHHHHHHHhcCCC--EEEEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe
Confidence 999999999999999999999988776664 5556677766 7999999999999999999999999999999998766
Q ss_pred cCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc-CCCCCCCchHHHHHHHHHHhCCeec-
Q 007463 515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQVRISIKF- 592 (603)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~- 592 (603)
++ .+.|+|.|+|+|||++..+++|++|++... +..+|+||||+|||+++++|||+|+
T Consensus 808 ~~---------------------~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~~~~G~GLGL~Ivk~ive~hGG~I~v 866 (895)
T PRK10490 808 GE---------------------RLQLDVWDNGPGIPPGQEQLIFDKFARGNKESAIPGVGLGLAICRAIVEVHGGTIWA 866 (895)
T ss_pred CC---------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCCCCCCCCccHHHHHHHHHHHHcCCEEEE
Confidence 44 388999999999999999999999998543 3457999999999999999999999
Q ss_pred --cCCcceEEEEC
Q 007463 593 --PAYVFTCFRVT 603 (603)
Q Consensus 593 --~~g~Gt~f~it 603 (603)
.+++||+|+|+
T Consensus 867 ~s~~~~Gt~f~i~ 879 (895)
T PRK10490 867 ENRPEGGACFRVT 879 (895)
T ss_pred EECCCCeEEEEEE
Confidence 67889999984
No 3
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=3.6e-38 Score=366.15 Aligned_cols=428 Identities=12% Similarity=0.111 Sum_probs=303.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchh--hHHH
Q 007463 113 LTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRH--TILY 190 (603)
Q Consensus 113 ~~~~~~lt~lv~~~~ai~l~~li~~~l~~~~~e~~l~~~~~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~--~il~ 190 (603)
++...++..+++++.+++++.+ ..++++....+++|.+..+.+..++..+..+.+.+ +.++
T Consensus 237 ~~~~Rl~l~~~~~~~~~~~~~l-----------------~~~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~ 299 (828)
T PRK13837 237 ARRVRLFLGAVSVALLGYIISL-----------------VLRLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIE 299 (828)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 4445566666666666666666 56677777778888888889999999998776554 8999
Q ss_pred HHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCCh-hHHHHHhcCCeEEeCCCchhhhccCCCcc
Q 007463 191 TTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ-DVVRIKGSDGVNILGPDSELAAASSGESV 269 (603)
Q Consensus 191 ~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (603)
.++..+.+.++++.|++++.+.++....... ..... ...++.... .+..........+..... ..........
T Consensus 300 ~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 373 (828)
T PRK13837 300 AALGILAKFFDADSAALALVDVGGRARIWTF--PGLTP---DPVWPDRLRALASTVKAAERDVVFVDRN-GPVRKRSCLT 373 (828)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCeeeccC--CccCC---CCCchHHHHHHHHHHhccCCceEEeecc-cchhhhcccc
Confidence 9999999999999999998887654332111 00000 000000000 111111222222221000 0001111122
Q ss_pred cCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCC-CCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 270 ESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREK 348 (603)
Q Consensus 270 ~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~-~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~ 348 (603)
..+...++++|+...+.. ++++++... ....+..++..+++.++++++.++++.+..++.+.++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~-------------~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~ 440 (828)
T PRK13837 374 RRGPALWACLAFKSGDRI-------------VALLGLGRQRYGLRPPAGELQLLELALDCLAHAIERRRLETERDALERR 440 (828)
T ss_pred cCCcceEEEEEeccCCce-------------EEEEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899997754443 344444333 233455899999999999999999988877665544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007463 349 LEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV-NLNSDQRMIVETMMKSSNVLSTLISDVMD 427 (603)
Q Consensus 349 L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~-~~~~~~~~~l~~i~~~~~~l~~li~~lld 427 (603)
+++ +++ .+..++|++++|||+||||++|.|+++++.+. ..+++.+++++.|.++++++..+++++++
T Consensus 441 l~~-------~~r-----l~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~ 508 (828)
T PRK13837 441 LEH-------ARR-----LEAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILA 508 (828)
T ss_pred HHH-------HHH-----HHHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 111 23567899999999999999999999998753 33456788999999999999999999999
Q ss_pred hCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEE
Q 007463 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507 (603)
Q Consensus 428 ~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i 507 (603)
++|...+ ..+++++.+++++++..++... .+++.+.++.++..+ .+.+|+.++.||+.||++||+||++++|.|
T Consensus 509 ~sr~~~~----~~~~~~l~~ll~~~~~~~~~~~-~~~i~l~~~~~~~~~-~v~~d~~~L~qvl~NLl~NAik~~~~~g~I 582 (828)
T PRK13837 509 FGRKGER----NTKPFDLSELVTEIAPLLRVSL-PPGVELDFDQDQEPA-VVEGNPAELQQVLMNLCSNAAQAMDGAGRV 582 (828)
T ss_pred HhCCCCC----CCcEEcHHHHHHHHHHHHHHHc-cCCcEEEEEeCCCCc-eEEECHHHHHHHHHHHHHHHHHHcccCCeE
Confidence 9996543 4569999999999999887544 467888888776645 799999999999999999999999999999
Q ss_pred EEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHh
Q 007463 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVR 587 (603)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~ 587 (603)
.|++.......... .......++.++.|+|+|+|+|||++..+++|++|++.+. +|+||||+|||++++.|
T Consensus 583 ~I~~~~~~~~~~~~------~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---~G~GLGL~i~~~iv~~~ 653 (828)
T PRK13837 583 DISLSRAKLRAPKV------LSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---GGTGLGLATVHGIVSAH 653 (828)
T ss_pred EEEEEEeecccccc------cccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC---CCCcchHHHHHHHHHHC
Confidence 99987652210000 0000112245689999999999999999999999987543 79999999999999999
Q ss_pred CCeec---cCCcceEEEEC
Q 007463 588 ISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 588 gG~I~---~~g~Gt~f~it 603 (603)
||+|+ .+|+||+|+|+
T Consensus 654 gG~i~v~s~~g~Gt~f~i~ 672 (828)
T PRK13837 654 AGYIDVQSTVGRGTRFDVY 672 (828)
T ss_pred CCEEEEEecCCCeEEEEEE
Confidence 99999 67889999984
No 4
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-41 Score=325.19 Aligned_cols=215 Identities=15% Similarity=0.200 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeee
Q 007463 367 SQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD--QRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFR 444 (603)
Q Consensus 367 ~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~--~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~ 444 (603)
++.|.+|.+++||||||||+++.++++.|.++...+. ...++..-.++.+||.++|+||+.+||++.++..++.++++
T Consensus 222 e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~in 301 (459)
T COG5002 222 ERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWIN 301 (459)
T ss_pred HHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHH
Confidence 5667899999999999999999999999998765444 46799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcE-EEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCcccc
Q 007463 445 LHAMIKEAACLARCLSIYRGFG-FSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDK 523 (603)
Q Consensus 445 l~~li~~~~~~~~~~~~~~~i~-l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~ 523 (603)
+..++..+++++....++.... +.-+++.. |.+|..|++++.||+.|+++||+||+|+||+|+|++...++
T Consensus 302 ft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~-~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~------- 373 (459)
T COG5002 302 FTAFLNEIINRFEMILKKETIARFVRDIPKQ-DIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET------- 373 (459)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhcCCCC-ceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc-------
Confidence 9999999999998875554433 44445544 55899999999999999999999999999999999987543
Q ss_pred ccccccccCCCCceEEEEEEEEcCCCCCccccccccccccc---cccCCCCCCCchHHHHHHHHHHhCCeec---cCCcc
Q 007463 524 KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR---RIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVF 597 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~---~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~G 597 (603)
++.++|.|+|.|||.++.+++|++||| .++++.+||||||+|+|.||+.|||+|| ..|+|
T Consensus 374 --------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkg 439 (459)
T COG5002 374 --------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKG 439 (459)
T ss_pred --------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecccCCc
Confidence 399999999999999999999999998 3455789999999999999999999999 56999
Q ss_pred eEEEEC
Q 007463 598 TCFRVT 603 (603)
Q Consensus 598 t~f~it 603 (603)
|+|+||
T Consensus 440 tt~~ft 445 (459)
T COG5002 440 TTFSFT 445 (459)
T ss_pred eEEEEE
Confidence 999986
No 5
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=7.8e-37 Score=347.89 Aligned_cols=437 Identities=15% Similarity=0.093 Sum_probs=299.8
Q ss_pred CchHHHHHHHHHHHHHhhHHHhHHhh-----cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHH
Q 007463 76 PFKWVLIQFIAFIVLCGLTHLLNGWT-----YGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKK 150 (603)
Q Consensus 76 ~~~~~~~l~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lt~lv~~~~ai~l~~li~~~l~~~~~e~~l~~ 150 (603)
..+.++|-..+++++-.+--.+++.. |..+.-. +..+.-++.+++.+++++...++
T Consensus 224 ~sr~~~~~~~~~~~~g~yl~~~~~~~~~~~~~gg~~~~---~~~~~~~~~~~~~~~~~~~s~~l---------------- 284 (679)
T TIGR02916 224 VSREMAFHSATLLGAGLYLLAMAGAGYYLRYFGGEWGD---AFQLAFLFAAGLLLAVLLFSGTL---------------- 284 (679)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHHHHHHHHhhHHH----------------
Confidence 34555555544444433333333333 2232221 23444455555566666666666
Q ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCC
Q 007463 151 KAWDLGREVGIIMK--QKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY 228 (603)
Q Consensus 151 ~~~~l~~~~~~~~~--~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~ 228 (603)
..+++..+..... +.+-...+..+++.++++.|.+++++.+++.+.+.++++.+++|+.++++..+.....++...
T Consensus 285 -r~~l~~~~~k~~~~~~~dyr~~~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~- 362 (679)
T TIGR02916 285 -RARLRVFISKHFFRYKYDYREEWLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPL- 362 (679)
T ss_pred -HHHHHHHHHHhccccccchHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCC-
Confidence 5566666643221 111222236789999999999999999999999999999999999988776555554443222
Q ss_pred CCCCCceecCChhHHHHHhcCCeEEeCCCchhhhcc----CCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEE
Q 007463 229 SDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAAS----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVL 304 (603)
Q Consensus 229 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl 304 (603)
.....+.+.+........+.....++....+... ........+.+++++|+...++. +|++
T Consensus 363 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vPL~~~~~~-------------~G~l 427 (679)
T TIGR02916 363 --AQAFEPSDSAFCQFLQESGWIINLEEARSEPDHYSGLVLPEWLREIPNAWLIVPLISGEEL-------------VGFV 427 (679)
T ss_pred --cccCCCCCCHHHHHHHhCCCcccchhhcCCcccccccccchhhhcCCCceEEEEeccCCEE-------------EEEE
Confidence 1123333444433333333322221111101000 00011122456899998865555 4555
Q ss_pred EecCC-CCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007463 305 VLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRR 383 (603)
Q Consensus 305 ~l~~~-~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRt 383 (603)
++..+ ..+.++.++.++++.++.|++.++++.+..++..+ +++ .+..+++.+.++||+||
T Consensus 428 ~l~~~~~~~~~~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~--------------~~~-----~~~~~~~~a~i~HdLrn 488 (679)
T TIGR02916 428 VLARPRTAGEFNWEVRDLLKTAGRQAASYLAQMEASEALAE--------------ARQ-----FEAFNRMSAFVVHDLKN 488 (679)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-----HHHHHHHHHHHHHHhcc
Confidence 55444 45689999999999999999999988776554221 111 12346688899999999
Q ss_pred hhHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhh
Q 007463 384 PMHSILGLLSIMQDVNLNSD-QRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIY 462 (603)
Q Consensus 384 PL~~I~g~~~lL~~~~~~~~-~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~ 462 (603)
|++.+....+...+...+++ ++++++.+.+..+++.++++++.+... +.+.+++++.++++++.+..+..
T Consensus 489 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~~--- 559 (679)
T TIGR02916 489 LVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKGL------EEEKLCVDLVDLLRRAIASKRAQ--- 559 (679)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCccccHHHHHHHHHHHhhhh---
Confidence 99999988887765444444 567899999999999999998865432 45667899999999988876532
Q ss_pred cCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEE
Q 007463 463 RGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFE 542 (603)
Q Consensus 463 ~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 542 (603)
+..++++++++ + .+.+|+..+.||+.||++||+||+++++.|+|++...++ .+.|+
T Consensus 560 -~~~~~l~~~~~-~-~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~---------------------~~~i~ 615 (679)
T TIGR02916 560 -GPRPEVSIDTD-L-SVRADRERLERVLGHLVQNALEATPGEGRVAIRVERECG---------------------AARIE 615 (679)
T ss_pred -cCCceEEeCCC-c-eEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcCC---------------------EEEEE
Confidence 23444455555 3 699999999999999999999999999999999987643 38899
Q ss_pred EEEcCCCCCccc-cccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 543 ILLNEVGSQPEV-STSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 543 V~D~G~Gi~~e~-~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
|+|||+|||++. .+++|++|+++++ +|+|+||++||++++.|||+|+ .+|+||+|+++
T Consensus 616 V~D~G~Gi~~~~i~~~lF~pf~~~~~---~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~ 677 (679)
T TIGR02916 616 IEDSGCGMSPAFIRERLFKPFDTTKG---AGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLV 677 (679)
T ss_pred EEEcCCCcChHHHHHhcCCCCCCCCC---CCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEE
Confidence 999999999999 9999999987543 6999999999999999999999 67889999985
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=3.8e-35 Score=340.18 Aligned_cols=218 Identities=21% Similarity=0.352 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeee
Q 007463 365 MASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFR 444 (603)
Q Consensus 365 ~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~ 444 (603)
++++.+++|++.||||+||||++|.|+++++.+...+++++++++.|.++++++..++++++++++++.+...+++++++
T Consensus 278 ~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~~ 357 (779)
T PRK11091 278 KASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPID 357 (779)
T ss_pred HHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeeccC
Confidence 33567789999999999999999999999998877888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccc
Q 007463 445 LHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKK 524 (603)
Q Consensus 445 l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~ 524 (603)
+.++++++...++..+..+++.+.++.++++|..+.+|+.++.||+.||++||+||+ ++|.|.|++....+.
T Consensus 358 l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~-~~g~v~i~~~~~~~~------- 429 (779)
T PRK11091 358 FTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFT-QQGGVTVRVRYEEGD------- 429 (779)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEEccCC-------
Confidence 999999999999999999999999999888887799999999999999999999976 466788888765221
Q ss_pred cccccccCCCCceEEEEEEEEcCCCCCccccccccccccccc----cCCCCCCCchHHHHHHHHHHhCCeec---cCCcc
Q 007463 525 WATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRI----VNEGIEDRMSFSVCKKLVQVRISIKF---PAYVF 597 (603)
Q Consensus 525 ~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~----~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~G 597 (603)
.+.|+|.|+|+|||++..+++|++|++.+ ++..+|+||||+|||++|+.|||+|+ .+|+|
T Consensus 430 -------------~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~G 496 (779)
T PRK11091 430 -------------MLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKG 496 (779)
T ss_pred -------------EEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCe
Confidence 38899999999999999999999998863 22357999999999999999999999 78899
Q ss_pred eEEEEC
Q 007463 598 TCFRVT 603 (603)
Q Consensus 598 t~f~it 603 (603)
|+|+|+
T Consensus 497 t~f~i~ 502 (779)
T PRK11091 497 SCFTLT 502 (779)
T ss_pred EEEEEE
Confidence 999984
No 7
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.7e-36 Score=320.24 Aligned_cols=228 Identities=14% Similarity=0.248 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007463 355 ALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLN-------SDQRMIVETMMKSSNVLSTLISDVMD 427 (603)
Q Consensus 355 ~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~-------~~~~~~l~~i~~~~~~l~~li~~lld 427 (603)
.++++++++.+..+.+++|++.+||||||||++|.++++++.+...+ +..+++++.+.+..+++.++++++++
T Consensus 136 ~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~ 215 (380)
T PRK09303 136 VLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLE 215 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555667889999999999999999999999999843221 23577899999999999999999999
Q ss_pred hCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEE
Q 007463 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507 (603)
Q Consensus 428 ~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i 507 (603)
+++.+.+...++.+++++.+++++++..+...+..+++.+.++++.++| .+.+|+.++.||+.||++||+||++++|.|
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~~~~~~~I 294 (380)
T PRK09303 216 VGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKYTPEGGTI 294 (380)
T ss_pred HHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 9999999988999999999999999999999999999999999988877 799999999999999999999999999999
Q ss_pred EEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccc-cCCCCCCCchHHHHHHHHHH
Q 007463 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRI-VNEGIEDRMSFSVCKKLVQV 586 (603)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~-~~~~~G~GLGL~i~k~iv~~ 586 (603)
.|.+....+ .++.|+|.|+|+|||++..+++|++|++.. +.+.+|+||||+|||++++.
T Consensus 295 ~i~~~~~~~--------------------~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~~~~~G~GLGL~i~~~iv~~ 354 (380)
T PRK09303 295 TLSMLHRTT--------------------QKVQVSICDTGPGIPEEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVRV 354 (380)
T ss_pred EEEEEecCC--------------------CEEEEEEEEcCCCCCHHHHHHHccCceeCCCCCCCCcccccHHHHHHHHHH
Confidence 998755322 148899999999999999999999999744 34467999999999999999
Q ss_pred hCCeec---cCCcceEEEEC
Q 007463 587 RISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 587 ~gG~I~---~~g~Gt~f~it 603 (603)
|||+|+ .+++||+|+|+
T Consensus 355 ~gG~i~v~s~~~~Gt~f~i~ 374 (380)
T PRK09303 355 HYGQIWVDSEPGQGSCFHFT 374 (380)
T ss_pred cCCEEEEEecCCCccEEEEE
Confidence 999999 67899999985
No 8
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=1.8e-36 Score=348.10 Aligned_cols=233 Identities=17% Similarity=0.227 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcC
Q 007463 352 QNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPK 431 (603)
Q Consensus 352 ~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~ 431 (603)
.+++++++++++++++++|++|+++|||||||||++|.|+++++.+...+++++++++.|.++++++.++++++++++|+
T Consensus 432 ~~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl 511 (894)
T PRK10618 432 VNKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNML 511 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557778888888899999999999999999999999999999876677888999999999999999999999999999
Q ss_pred CCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEE
Q 007463 432 DSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRV 511 (603)
Q Consensus 432 e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v 511 (603)
+.|+.+++.+++++.+++++++..+...+..+++.+.++++.+.+..+.+|+.++.||+.||++||+||+ ++|.|+|++
T Consensus 512 e~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t-~~G~I~I~v 590 (894)
T PRK10618 512 ETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTT-AYGKITLEV 590 (894)
T ss_pred hcCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhC-CCCeEEEEE
Confidence 9999999999999999999999999999999999999988766566799999999999999999999965 467888888
Q ss_pred EeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc--CCCCCCCchHHHHHHHHHHhCC
Q 007463 512 VSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV--NEGIEDRMSFSVCKKLVQVRIS 589 (603)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG 589 (603)
....+. ..++.|+|.|+|+|||++.++++|+||++... +.++|+||||+|||+||+.|||
T Consensus 591 ~~~~~~------------------~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~Lve~~GG 652 (894)
T PRK10618 591 DQDESS------------------PDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQLCRKLGG 652 (894)
T ss_pred EEccCC------------------CcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHHHHHHcCC
Confidence 765321 23589999999999999999999999987543 2346999999999999999999
Q ss_pred eec---cCCcceEEEEC
Q 007463 590 IKF---PAYVFTCFRVT 603 (603)
Q Consensus 590 ~I~---~~g~Gt~f~it 603 (603)
+|+ .+|+||+|+|+
T Consensus 653 ~I~v~S~~g~GT~F~I~ 669 (894)
T PRK10618 653 HLTIKSREGLGTRYSIH 669 (894)
T ss_pred EEEEEECCCCcEEEEEE
Confidence 999 78999999984
No 9
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-33 Score=292.66 Aligned_cols=221 Identities=14% Similarity=0.222 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCC
Q 007463 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQD---VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKD 432 (603)
Q Consensus 356 L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~---~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e 432 (603)
+.+.+.+++++|.....|...+|||||+||+.|.+++++|.+ +..+.+.++++..+.+.+.++.++|++++.+|++.
T Consensus 510 la~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~ 589 (750)
T COG4251 510 LAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLG 589 (750)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 333345566667777899999999999999999999999974 45788899999999999999999999999999985
Q ss_pred CCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCC-cEEEEEE
Q 007463 433 SGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR-GTVLFRV 511 (603)
Q Consensus 433 ~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~-g~i~i~v 511 (603)
.- ....++.|+.+++++++..++......|+.+.+. + +| .|.+|+.++.||+.||+.||+||..++ ..|.|+.
T Consensus 590 ~~--~~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~ 663 (750)
T COG4251 590 LT--EAPLQPTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEISA 663 (750)
T ss_pred cc--cCCCCCcchHHHHHHHHHhcccccccccceEEec--c-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEEee
Confidence 54 4455589999999999999999988888777763 4 78 799999999999999999999987655 7888887
Q ss_pred EeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccc-cCCCCCCCchHHHHHHHHHHhCCe
Q 007463 512 VSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRI-VNEGIEDRMSFSVCKKLVQVRISI 590 (603)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~-~~~~~G~GLGL~i~k~iv~~~gG~ 590 (603)
...++. +.|.|.|||.||+++.++++|..|.|-. ..+..|+|+||+|||+|+|.|+|+
T Consensus 664 ~r~ed~---------------------~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~ 722 (750)
T COG4251 664 ERQEDE---------------------WTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGR 722 (750)
T ss_pred eccCCc---------------------eEEEecCCCCCcCHHHHHHHHHHHHhcCchhhhcCCCccHHHHHHHHHHhCce
Confidence 666554 8899999999999999999999998843 345779999999999999999999
Q ss_pred ec---cCCcceEEEEC
Q 007463 591 KF---PAYVFTCFRVT 603 (603)
Q Consensus 591 I~---~~g~Gt~f~it 603 (603)
|| .+|+|+||.++
T Consensus 723 i~vEs~~gEgsTF~f~ 738 (750)
T COG4251 723 IWVESTPGEGSTFYFT 738 (750)
T ss_pred EEEeecCCCceeEEEE
Confidence 99 78999999985
No 10
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=4.4e-35 Score=341.17 Aligned_cols=229 Identities=21% Similarity=0.303 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCC
Q 007463 353 NRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKD 432 (603)
Q Consensus 353 ~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e 432 (603)
++++++++++++++++.|+.|++.|||||||||++|.|++++|+....+++++++++.|.++++++..+|++++++++++
T Consensus 430 e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie 509 (924)
T PRK10841 430 EESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIE 509 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666677777889999999999999999999999999998877888889999999999999999999999999999
Q ss_pred CCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEE
Q 007463 433 SGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVV 512 (603)
Q Consensus 433 ~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~ 512 (603)
.+...++.+++++.+++++++..+...+..+++.+.+.++++.|..+.+|+.++.||+.||++||+||++ +|.|.|++.
T Consensus 510 ~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~-~G~I~I~v~ 588 (924)
T PRK10841 510 SEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTD-TGCIVLHVR 588 (924)
T ss_pred CCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCC-CCcEEEEEE
Confidence 9999999999999999999999999999999999999998888867999999999999999999999765 567888887
Q ss_pred eecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc---CCCCCCCchHHHHHHHHHHhCC
Q 007463 513 SENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQVRIS 589 (603)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG 589 (603)
..++ ++.|+|.|+|+||+++..+++|++|++... +..+|+||||+|||++++.|||
T Consensus 589 ~~~~---------------------~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG 647 (924)
T PRK10841 589 VDGD---------------------YLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDG 647 (924)
T ss_pred EeCC---------------------EEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCC
Confidence 6533 389999999999999999999999987432 3457999999999999999999
Q ss_pred eec---cCCcceEEEEC
Q 007463 590 IKF---PAYVFTCFRVT 603 (603)
Q Consensus 590 ~I~---~~g~Gt~f~it 603 (603)
+|+ .+|+||+|+|+
T Consensus 648 ~I~v~S~~g~Gt~F~i~ 664 (924)
T PRK10841 648 DISVDSEPGMGSQFTIR 664 (924)
T ss_pred EEEEEEcCCCcEEEEEE
Confidence 999 67899999984
No 11
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=7.8e-34 Score=335.50 Aligned_cols=241 Identities=23% Similarity=0.313 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 346 REKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDV 425 (603)
Q Consensus 346 ~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~l 425 (603)
.++++.++.++..++++++++++.+.+|++.|||||||||++|.|+++.+.+...+++++++++.|.++++++..+++++
T Consensus 269 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l 348 (919)
T PRK11107 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDI 348 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888888889999999999999999999999999999999877788889999999999999999999999
Q ss_pred HhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCc
Q 007463 426 MDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG 505 (603)
Q Consensus 426 ld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g 505 (603)
+++++++.+...++..++++.+++++++..+...+..+++.+.+++++++|..+.+|+.++.||+.||++||+||++ +|
T Consensus 349 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~-~g 427 (919)
T PRK11107 349 LDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTE-SG 427 (919)
T ss_pred HHHHHHhcCCcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCC-CC
Confidence 99999999999999999999999999999999999999999999998888877999999999999999999999765 45
Q ss_pred EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccc---cCCCCCCCchHHHHHH
Q 007463 506 TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRI---VNEGIEDRMSFSVCKK 582 (603)
Q Consensus 506 ~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~---~~~~~G~GLGL~i~k~ 582 (603)
.|.|++...... ++..++.|+|.|+|+|||++.++++|++|++.. +++.+|+||||+|||+
T Consensus 428 ~v~i~v~~~~~~----------------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~ 491 (919)
T PRK11107 428 NIDILVELRALS----------------NTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQK 491 (919)
T ss_pred cEEEEEEEEecC----------------CCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHH
Confidence 677666554321 233458999999999999999999999998733 3345799999999999
Q ss_pred HHHHhCCeec---cCCcceEEEEC
Q 007463 583 LVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 583 iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+++.|||+|+ .+|+||+|+|+
T Consensus 492 i~~~~gG~i~v~s~~~~Gt~f~i~ 515 (919)
T PRK11107 492 LVNEMGGDISFHSQPNRGSTFWFH 515 (919)
T ss_pred HHHHhCCEEEEEecCCCCEEEEEE
Confidence 9999999999 67899999984
No 12
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=7.4e-34 Score=337.42 Aligned_cols=228 Identities=24% Similarity=0.399 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCC
Q 007463 355 ALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (603)
Q Consensus 355 ~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g 434 (603)
..++++.+++++++.+..|++.|||||||||++|.|+++++.+...+++++++++.|.++++++..++++++++++++.+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~ 528 (968)
T TIGR02956 449 NHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAG 528 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556677888899999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEee
Q 007463 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (603)
Q Consensus 435 ~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~ 514 (603)
...++.+++++.+++++++..++..+..+++.+.++++++.|..+.+|+.++.||+.||++||+||+ ++|.|+|++...
T Consensus 529 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~-~~g~i~i~~~~~ 607 (968)
T TIGR02956 529 HLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFT-DRGSVVLRVSLN 607 (968)
T ss_pred CCeeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhC-CCCeEEEEEEEc
Confidence 9999999999999999999999999999999999999888887899999999999999999999975 467788888765
Q ss_pred cCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc-CCCCCCCchHHHHHHHHHHhCCeec-
Q 007463 515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQVRISIKF- 592 (603)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~- 592 (603)
++. .+.|+|.|+|+|||++..+++|++|++... ++.+|+||||+|||++++.|||+|+
T Consensus 608 ~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~g~GLGL~i~~~l~~~~gG~i~~ 667 (968)
T TIGR02956 608 DDS--------------------SLLFEVEDTGCGIAEEEQATLFDAFTQADGRRRSGGTGLGLAISQRLVEAMDGELGV 667 (968)
T ss_pred CCC--------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccCCCCCCCCccHHHHHHHHHHHHcCCEEEE
Confidence 331 188999999999999999999999998543 3347999999999999999999998
Q ss_pred --cCCcceEEEEC
Q 007463 593 --PAYVFTCFRVT 603 (603)
Q Consensus 593 --~~g~Gt~f~it 603 (603)
.+|+||+|+|+
T Consensus 668 ~s~~~~Gt~f~~~ 680 (968)
T TIGR02956 668 ESELGVGSCFWFT 680 (968)
T ss_pred EecCCCcEEEEEE
Confidence 67899999984
No 13
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=5e-34 Score=337.23 Aligned_cols=236 Identities=17% Similarity=0.285 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 345 MREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISD 424 (603)
Q Consensus 345 ~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ 424 (603)
++++++++.+++++++++++++++.+.+|++.+||||||||++|.|+++++.+...+++++++++.+.++++++..++++
T Consensus 373 l~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ 452 (921)
T PRK15347 373 LENKVAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINN 452 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888888888889999999999999999999999999999998888889999999999999999999999
Q ss_pred HHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCC
Q 007463 425 VMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR 504 (603)
Q Consensus 425 lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~ 504 (603)
++++++++.+.+.++.+++++.++++++...++..+..+++.+.+.+++++|..+.+|+.++.||+.||++||+||++ +
T Consensus 453 ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~-~ 531 (921)
T PRK15347 453 LLDFSRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTE-T 531 (921)
T ss_pred HHHHHHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCC-C
Confidence 999999999999999999999999999999999999999999999998888878999999999999999999999765 5
Q ss_pred cEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHH
Q 007463 505 GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 505 g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv 584 (603)
|.|+|++...++ .+.|+|+|+|+||+++.++++|++|++... ..+|+||||+|||+++
T Consensus 532 g~I~i~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~g~GLGL~i~~~~~ 589 (921)
T PRK15347 532 GGIRLRVKRHEQ---------------------QLCFTVEDTGCGIDIQQQQQIFTPFYQADT-HSQGTGLGLTIASSLA 589 (921)
T ss_pred CCEEEEEEEcCC---------------------EEEEEEEEcCCCCCHHHHHHHhcCcccCCC-CCCCCchHHHHHHHHH
Confidence 668888876543 389999999999999999999999998554 3479999999999999
Q ss_pred HHhCCeec---cCCcceEEEEC
Q 007463 585 QVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 585 ~~~gG~I~---~~g~Gt~f~it 603 (603)
+.|||+|+ .+|+||+|+|+
T Consensus 590 ~~~gG~i~i~s~~~~Gt~f~i~ 611 (921)
T PRK15347 590 KMMGGELTLFSTPGVGSCFSLV 611 (921)
T ss_pred HHcCCEEEEEecCCCceEEEEE
Confidence 99999999 78899999974
No 14
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=4.7e-33 Score=328.56 Aligned_cols=241 Identities=22% Similarity=0.303 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 007463 340 EESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLS 419 (603)
Q Consensus 340 ee~~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~ 419 (603)
+..+...+++++...++++++.+.+++++++..|++.||||+||||++|.|+++++.+...+++++++++.|.++++++.
T Consensus 414 ~~v~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~ 493 (914)
T PRK11466 414 AQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLL 493 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33444455566666677778888888899999999999999999999999999999887778888999999999999999
Q ss_pred HHHHHHHhhCcCCCCC--ccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhh
Q 007463 420 TLISDVMDNSPKDSGR--FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSL 497 (603)
Q Consensus 420 ~li~~lld~sr~e~g~--~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NA 497 (603)
.++++++++++++.|. ..++.+++++.+++++++..+...+..+++.+.+++++++|..+.+|+.++.||+.||++||
T Consensus 494 ~li~~ll~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NA 573 (914)
T PRK11466 494 TILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNA 573 (914)
T ss_pred HHHHHHHHHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHH
Confidence 9999999999998874 56777899999999999999999999999999999988888779999999999999999999
Q ss_pred cccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchH
Q 007463 498 LNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSF 577 (603)
Q Consensus 498 ik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL 577 (603)
+||+ ++|.|.|++...++ .+.|.|.|+|+|||++..+++|+||++..+ +.+|+||||
T Consensus 574 ik~~-~~g~I~i~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~g~GLGL 630 (914)
T PRK11466 574 LRFT-DEGSIVLRSRTDGE---------------------QWLVEVEDSGCGIDPAKLAEIFQPFVQVSG-KRGGTGLGL 630 (914)
T ss_pred HHhC-CCCeEEEEEEEcCC---------------------EEEEEEEECCCCCCHHHHHHHhchhhcCCC-CCCCCcccH
Confidence 9975 46788888876533 388999999999999999999999997543 457999999
Q ss_pred HHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 578 SVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 578 ~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+|||++++.|||+|+ .+|+||+|+|+
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~ 659 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEVGSCFCLR 659 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCeEEEEE
Confidence 999999999999999 67889999974
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=295.54 Aligned_cols=212 Identities=20% Similarity=0.187 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHH
Q 007463 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (603)
Q Consensus 368 ~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~ 446 (603)
+.+.+|++.+||||||||++|.|+++++.+... ++..+++++.|.++++++..++++++++++.+.+......+++++.
T Consensus 202 ~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~ 281 (430)
T PRK11006 202 GARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVP 281 (430)
T ss_pred HHHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHH
Confidence 345679999999999999999999999986443 4456779999999999999999999999999888776667889999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccc
Q 007463 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWA 526 (603)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~ 526 (603)
.+++.+...+.... .+++.+.+++++++ .+.+|+.++.|++.||++||+||+++++.|.|++...++
T Consensus 282 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~---------- 348 (430)
T PRK11006 282 MMLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQ---------- 348 (430)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC----------
Confidence 99988777766555 67788888887764 489999999999999999999999989999998876543
Q ss_pred cccccCCCCceEEEEEEEEcCCCCCccccccccccccccc---cCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEE
Q 007463 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRI---VNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCF 600 (603)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~---~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f 600 (603)
.+.|+|.|+|+|||++..+++|++|++.. +++.+|+||||+|||++++.|||+|+ .+|+||+|
T Consensus 349 -----------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f 417 (430)
T PRK11006 349 -----------GAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRF 417 (430)
T ss_pred -----------EEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCCCceEE
Confidence 28899999999999999999999998743 23457999999999999999999999 67889999
Q ss_pred EEC
Q 007463 601 RVT 603 (603)
Q Consensus 601 ~it 603 (603)
+|+
T Consensus 418 ~i~ 420 (430)
T PRK11006 418 SFV 420 (430)
T ss_pred EEE
Confidence 984
No 16
>PRK10364 sensor protein ZraS; Provisional
Probab=99.98 E-value=1.1e-28 Score=268.86 Aligned_cols=206 Identities=14% Similarity=0.217 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHH
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~ 447 (603)
..+++.+.++||+||||++|.|+++++.+.. ..++.+++++.|.+.++++.+++++++++++.. ..+..++++++
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567899999999999999999999987533 345567889999999999999999999998843 34567999999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCcccccccc
Q 007463 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (603)
Q Consensus 448 li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~ 527 (603)
++++++..+...+..+++.+.++.++..+ .+.+|+.++.|++.||++||+||+++++.|.|++...++.
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~---------- 380 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAG---------- 380 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCe----------
Confidence 99999999999999999999999887766 6899999999999999999999988899999998876443
Q ss_pred ccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+.|+|+|+|+|||++..+++|++|++.+ .+|+||||++||++++.|||+++ .+|+||+|+|+
T Consensus 381 -----------~~i~V~D~G~Gi~~~~~~~if~~~~~~k---~~g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~ 445 (457)
T PRK10364 381 -----------VKISVTDSGKGIAADQLEAIFTPYFTTK---AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLW 445 (457)
T ss_pred -----------EEEEEEECCCCCCHHHHHHHhCccccCC---CCCCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEE
Confidence 8999999999999999999999998643 46899999999999999999998 67889999974
No 17
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.98 E-value=1e-30 Score=286.55 Aligned_cols=209 Identities=12% Similarity=0.096 Sum_probs=163.9
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHH
Q 007463 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMI 449 (603)
Q Consensus 370 ~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li 449 (603)
..+++..++||+||||+.|.++++++.+...+.......+.+.+....+...++.+.++.. ........++|+.+++
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~dl~~~~ 352 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP---QSPQEIVVPVNLNQIL 352 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcccccccccHHHHH
Confidence 3567788889999999999999999875432222223333333333444444444444332 1223445799999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCc----EEEEEEEeecCCCCcccccc
Q 007463 450 KEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG----TVLFRVVSENGSQDRNDKKW 525 (603)
Q Consensus 450 ~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g----~i~i~v~~~~~~~~~~~~~~ 525 (603)
++++..++..+..+++.+.++.++.+| .+.+|+.++.||+.||++||+||+++++ .|.|.+...++
T Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~--------- 422 (494)
T TIGR02938 353 RDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGD--------- 422 (494)
T ss_pred HHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCC---------
Confidence 999999998889999999999888888 7999999999999999999999987763 35555444322
Q ss_pred ccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEE
Q 007463 526 ATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRV 602 (603)
Q Consensus 526 ~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~i 602 (603)
.+.|+|+|||+|||++..+++|++|++.+.+..+|+||||+|||+||+.|||+|+ .+|+||+|+|
T Consensus 423 ------------~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i 490 (494)
T TIGR02938 423 ------------LIVVSILDSGPGIPQDLRYKVFEPFFTTKGGSRKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIV 490 (494)
T ss_pred ------------EEEEEEEeCCCCCCHHHHHHhcCCCcccCCCCCCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEE
Confidence 4889999999999999999999999987655578999999999999999999999 7889999998
Q ss_pred C
Q 007463 603 T 603 (603)
Q Consensus 603 t 603 (603)
+
T Consensus 491 ~ 491 (494)
T TIGR02938 491 E 491 (494)
T ss_pred E
Confidence 5
No 18
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.98 E-value=7.9e-31 Score=252.50 Aligned_cols=213 Identities=15% Similarity=0.245 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHH
Q 007463 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (603)
Q Consensus 368 ~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~ 447 (603)
++-..+.++++||+||||..|.|.+++|...-.++..++|.+.|.++++|+.++++.+.-++. ..+.+..|+++|+
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 455678999999999999999999999997666666899999999999999999999866553 3345667999999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCC----CCcEEEEEEEeecCCCCcccc
Q 007463 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNS----RRGTVLFRVVSENGSQDRNDK 523 (603)
Q Consensus 448 li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~----~~g~i~i~v~~~~~~~~~~~~ 523 (603)
+++.+...++..+. .++.+.-+.++++| .+.+|+++|.|++.||+.||+++.. .+|.|+++.+..-.-
T Consensus 206 VLerV~~lv~~e~~-~~i~l~rdYDPSLP-~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~------ 277 (363)
T COG3852 206 VLERVRALVEAEFA-DNVRLIRDYDPSLP-EVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL------ 277 (363)
T ss_pred HHHHHHHHHhcccC-CceEEeecCCCCCc-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE------
Confidence 99999888876654 67999999999999 5999999999999999999999743 358888887533110
Q ss_pred ccccccccCC--CCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec--cCCcceE
Q 007463 524 KWATWRQSSV--DGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF--PAYVFTC 599 (603)
Q Consensus 524 ~~~~~~~~~~--~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~--~~g~Gt~ 599 (603)
+.. .....+.++|.|||||+|++..+++|.||.+++ .+|+||||+++++++..|||.|+ +..+.|+
T Consensus 278 -------~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r---~~GsGLGLala~~li~qH~G~Ie~~S~Pg~T~ 347 (363)
T COG3852 278 -------TIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGR---EGGTGLGLALAQNLIDQHGGKIEFDSWPGRTV 347 (363)
T ss_pred -------EccCceeEeeeeeEEecCCCCCChHHhhhccccccccC---CCCccccHHHHHHHHHhcCCEEEEeccCCceE
Confidence 000 112336789999999999999999999997643 46999999999999999999999 4344799
Q ss_pred EEE
Q 007463 600 FRV 602 (603)
Q Consensus 600 f~i 602 (603)
|+|
T Consensus 348 Frv 350 (363)
T COG3852 348 FRV 350 (363)
T ss_pred EEE
Confidence 987
No 19
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.97 E-value=1.1e-30 Score=316.39 Aligned_cols=231 Identities=17% Similarity=0.255 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhCcCCCC
Q 007463 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD-QRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (603)
Q Consensus 356 L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~-~~~~l~~i~~~~~~l~~li~~lld~sr~e~g 434 (603)
++++++++.++++++++|++.|||||||||++|.|+++++.+...+++ ..++++.+..+++++..++++++++++++.+
T Consensus 698 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~ 777 (1197)
T PRK09959 698 LEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESG 777 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334444455556788999999999999999999999999986555554 4578999999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEee
Q 007463 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (603)
Q Consensus 435 ~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~ 514 (603)
...++.+++++.+++++++..++..+..+++.+.+..+.+.+..+.+|+.++.||+.||++||+||+++ |.+.+.+...
T Consensus 778 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~-g~i~i~~~~~ 856 (1197)
T PRK09959 778 NYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTE-GAVKITTSLG 856 (1197)
T ss_pred CceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCC-CCEEEEEEEe
Confidence 999999999999999999999999999999988876543222369999999999999999999998764 4555555432
Q ss_pred cCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc-CCCCCCCchHHHHHHHHHHhCCeec-
Q 007463 515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQVRISIKF- 592 (603)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~- 592 (603)
... ++...+.|+|.|+|+|||++..+++|++|++... ++.+|+||||+|||++++.|||+|+
T Consensus 857 ~~~----------------~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 920 (1197)
T PRK09959 857 HID----------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSL 920 (1197)
T ss_pred eec----------------CCceEEEEEEEEcCCCCCHHHHHHhhccccccccCCCCCCcCchHHHHHHHHHHcCCEEEE
Confidence 111 2334588999999999999999999999987543 3456999999999999999999999
Q ss_pred --cCCcceEEEEC
Q 007463 593 --PAYVFTCFRVT 603 (603)
Q Consensus 593 --~~g~Gt~f~it 603 (603)
.+|+||+|+|+
T Consensus 921 ~s~~~~Gt~f~i~ 933 (1197)
T PRK09959 921 ESHPGIGTTFTIT 933 (1197)
T ss_pred EeCCCCcEEEEEE
Confidence 67889999984
No 20
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=6.7e-30 Score=267.26 Aligned_cols=220 Identities=14% Similarity=0.156 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHhhccchhHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcC
Q 007463 357 QQAQKDALMASQ--ARNAFQKVMSNGMRRPMHSILGLLSIM---QDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPK 431 (603)
Q Consensus 357 ~~a~~~~~~a~~--~~~~~l~~~sHeLRtPL~~I~g~~~lL---~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~ 431 (603)
++++.++.++++ ..+++.+++|||++.||++|.++++.. .+....++.++-+..|..-++||-.+.+.|-.|+|.
T Consensus 369 R~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk 448 (603)
T COG4191 369 RRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARK 448 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444555554 457889999999999999999988754 456667778899999999999999999999999997
Q ss_pred CCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccC--CCCcEEEE
Q 007463 432 DSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCN--SRRGTVLF 509 (603)
Q Consensus 432 e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~--~~~g~i~i 509 (603)
..+. ..++.+.++|++++..++...+..+..+..+.++..+ +|++|+.+|+|||.||+.||+++. ++.+.|.|
T Consensus 449 ~~~a----~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~-~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i 523 (603)
T COG4191 449 SRDA----AGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPL-WVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSI 523 (603)
T ss_pred Cccc----cCCccHHHHHHHHHHHHHHhhhccCceeeccCCCCCc-eeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEE
Confidence 5543 5689999999999999999999999999998876544 899999999999999999999975 45778888
Q ss_pred EEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCC
Q 007463 510 RVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRIS 589 (603)
Q Consensus 510 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG 589 (603)
++..+++. +.++|.||||||+|+...++|+||++++. .+.|.||||+||+.|++.+||
T Consensus 524 ~~~~~~~~---------------------v~l~VrDnGpGi~~e~~~~lFePF~TtK~-~~~GLGLGLaIS~~i~~d~GG 581 (603)
T COG4191 524 RAQREGGQ---------------------VVLTVRDNGPGIAPEALPHLFEPFFTTKP-VGKGLGLGLAISQNIARDLGG 581 (603)
T ss_pred EEEecCCe---------------------EEEEEccCCCCCCHHHHHhhcCCccccCc-ccCCcchhHHHHHHHHHHhCC
Confidence 88777654 99999999999999999999999987553 357999999999999999999
Q ss_pred eec---cCCcceEEEEC
Q 007463 590 IKF---PAYVFTCFRVT 603 (603)
Q Consensus 590 ~I~---~~g~Gt~f~it 603 (603)
+++ .+++|+.|+|+
T Consensus 582 sL~v~n~~~~Ga~F~i~ 598 (603)
T COG4191 582 SLEVANHPEGGASFTIE 598 (603)
T ss_pred eEEeecCCCCceEEEEE
Confidence 999 46889999984
No 21
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=3.6e-30 Score=281.36 Aligned_cols=227 Identities=10% Similarity=0.113 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007463 349 LEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMD 427 (603)
Q Consensus 349 L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~lld 427 (603)
+.+..+.+.+..++.++..+...+|++.+||||||||++|.++++.+.+.. .+.+ +....+.+..+++..+++++++
T Consensus 245 l~~L~~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~~--~~~~~~~~~i~ri~~~i~~ll~ 322 (485)
T PRK10815 245 LTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSVE--QAEPIMLEQISRISQQIGYYLH 322 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444555678999999999999999999999987543 3332 3345677888999999999999
Q ss_pred hCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEE
Q 007463 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507 (603)
Q Consensus 428 ~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i 507 (603)
.++.+.+...+..+++++.+++++++..++..+..+++.+.++++++. .+.+|+..+.+|+.||++||+||+++ .+
T Consensus 323 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~--~i 398 (485)
T PRK10815 323 RASMRSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE--FV 398 (485)
T ss_pred HHHhhcCCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC--cE
Confidence 999988888888899999999999999999999999999999887654 58899999999999999999998765 35
Q ss_pred EEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHh
Q 007463 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVR 587 (603)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~ 587 (603)
.|++...++ .+.|+|+|+|+|||++..+++|++|++..+ ..+|+||||+|||++++.|
T Consensus 399 ~I~~~~~~~---------------------~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-~~~G~GLGL~Ivk~iv~~~ 456 (485)
T PRK10815 399 EISARQTDE---------------------HLHIVVEDDGPGIPESKRELIFDRGQRADT-LRPGQGLGLSVAREITEQY 456 (485)
T ss_pred EEEEEEeCC---------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCC-CCCCcchhHHHHHHHHHHc
Confidence 566554433 388999999999999999999999987543 3469999999999999999
Q ss_pred CCeec---cCCcceEEEEC
Q 007463 588 ISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 588 gG~I~---~~g~Gt~f~it 603 (603)
||+|+ .+++||+|+|+
T Consensus 457 gG~i~v~s~~~~Gt~f~i~ 475 (485)
T PRK10815 457 EGKISAGDSPLGGARMEVI 475 (485)
T ss_pred CCEEEEEECCCCEEEEEEE
Confidence 99999 67789999974
No 22
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=7.6e-30 Score=275.89 Aligned_cols=223 Identities=11% Similarity=0.097 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007463 350 EEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNS 429 (603)
Q Consensus 350 ~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~s 429 (603)
.+..+.+.+..++.++..+.+.+|++.+|||+||||+.|.+.++++.+. +++.+ +.+.+..+++..++++++.++
T Consensus 192 ~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~ 266 (433)
T PRK10604 192 ERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYA 266 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555556778899999999999999999999988632 22222 237888999999999999999
Q ss_pred cCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEE
Q 007463 430 PKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLF 509 (603)
Q Consensus 430 r~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i 509 (603)
|++.+..+++.+++++.+++++++..++.....+++.+.+ +.+ +..+.+|+..+.+++.||++||+||+ ++.|.|
T Consensus 267 rl~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~NLl~NAik~~--~~~I~I 341 (433)
T PRK10604 267 RLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQ-GDYGALDMRLMERVLDNLLNNALRYA--HSRVRV 341 (433)
T ss_pred hccCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCC-CceEecCHHHHHHHHHHHHHHHHHhC--CCeEEE
Confidence 9999988888999999999999999998877777665554 333 22578899999999999999999976 467888
Q ss_pred EEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc---CCCCCCCchHHHHHHHHHH
Q 007463 510 RVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQV 586 (603)
Q Consensus 510 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~ 586 (603)
++...++. +.|+|+|+|+|||++..+++|++|++... ++.+|+||||+|||++++.
T Consensus 342 ~~~~~~~~---------------------~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~ 400 (433)
T PRK10604 342 SLLLDGNQ---------------------ACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALA 400 (433)
T ss_pred EEEEECCE---------------------EEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHH
Confidence 88766443 88999999999999999999999998432 2456899999999999999
Q ss_pred hCCeec---cCCcceEEEEC
Q 007463 587 RISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 587 ~gG~I~---~~g~Gt~f~it 603 (603)
|||+++ .+++||+|+++
T Consensus 401 ~gG~i~v~s~~~~G~~f~i~ 420 (433)
T PRK10604 401 MGGSVNCDESELGGARFSFS 420 (433)
T ss_pred CCCEEEEEecCCCeeEEEEE
Confidence 999999 67889999984
No 23
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=2.2e-29 Score=265.39 Aligned_cols=205 Identities=11% Similarity=0.084 Sum_probs=171.3
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeH-HHHH
Q 007463 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRL-HAMI 449 (603)
Q Consensus 371 ~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l-~~li 449 (603)
..|.+.++||+||||++|.+.++++.+... + ..+.+.+..+++...++++++++|.+........+++++ ++++
T Consensus 138 ~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~~i 212 (356)
T PRK10755 138 RLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLEDVI 212 (356)
T ss_pred HHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHHHH
Confidence 468999999999999999999998864322 2 234455667889999999999999876655566678888 9999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCcccccccccc
Q 007463 450 KEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWR 529 (603)
Q Consensus 450 ~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~ 529 (603)
..+...++..+..+++.+.++.++. +..+.+|+..+.+++.||++||+||+++++.|.|++...++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~------------ 279 (356)
T PRK10755 213 LPSQDELSEMLEQRQQTLLLPESAA-DITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDGG------------ 279 (356)
T ss_pred HHHHHHHHHHHHHhCCeEEeccCCC-ceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCE------------
Confidence 9999989988888988888753333 336999999999999999999999998889999988665432
Q ss_pred ccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCC-cceEEEEC
Q 007463 530 QSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAY-VFTCFRVT 603 (603)
Q Consensus 530 ~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g-~Gt~f~it 603 (603)
+.++|+|+|+||+++.++++|++|++... +.+|+||||+||+++++.|||+++ .++ +||+|+++
T Consensus 280 ---------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~ 347 (356)
T PRK10755 280 ---------AVLAVEDEGPGIDESKCGELSKAFVRMDS-RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVW 347 (356)
T ss_pred ---------EEEEEEECCCCCCHHHHHHhCCCeEeCCC-CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEE
Confidence 88999999999999999999999987543 456999999999999999999999 566 89999874
No 24
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=3.8e-29 Score=271.92 Aligned_cols=231 Identities=11% Similarity=0.093 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q 007463 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD-QRMIVETMMKSSNVLSTLISDV 425 (603)
Q Consensus 347 ~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~-~~~~l~~i~~~~~~l~~li~~l 425 (603)
+++.+..+.+.+...+.++..+...+|++.++||+|||++.+.+.++.+.....+++ ..++++.+.+.++++..+++++
T Consensus 214 ~Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l 293 (449)
T PRK10337 214 SEVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQL 293 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555679999999999999999999988765444444 4568999999999999999999
Q ss_pred HhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCc
Q 007463 426 MDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG 505 (603)
Q Consensus 426 ld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g 505 (603)
++++|.+.+......+++++.+++++++..+...+..+++.+.++.++..+ .+.+|+..+.+++.||++||+||+++++
T Consensus 294 l~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~l~~vl~Nli~NA~k~~~~~~ 372 (449)
T PRK10337 294 LTLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHPV-IRTGQPLLLSLLVRNLLDNAIRYSPQGS 372 (449)
T ss_pred HHHHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCc-eeecCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999887666677899999999999999999999999999998876534 5799999999999999999999999888
Q ss_pred EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHH
Q 007463 506 TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 506 ~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~ 585 (603)
.|.|++.. ..++|.|+|+|||++.++++|++|++..+.+.+|+||||+||+++++
T Consensus 373 ~i~i~~~~-------------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~iv~~i~~ 427 (449)
T PRK10337 373 VVDVTLNA-------------------------RNFTVRDNGPGVTPEALARIGERFYRPPGQEATGSGLGLSIVRRIAK 427 (449)
T ss_pred eEEEEEEe-------------------------eEEEEEECCCCCCHHHHHHhcccccCCCCCCCCccchHHHHHHHHHH
Confidence 88887743 24899999999999999999999998665566799999999999999
Q ss_pred HhCCeec---cCCcceEEEEC
Q 007463 586 VRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 586 ~~gG~I~---~~g~Gt~f~it 603 (603)
+|||+++ .+++|++|+|+
T Consensus 428 ~~gg~l~~~s~~~~G~~~~i~ 448 (449)
T PRK10337 428 LHGMNVSFGNAPEGGFEAKVS 448 (449)
T ss_pred HcCCEEEEEecCCCeEEEEEe
Confidence 9999998 67789999985
No 25
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=3e-29 Score=273.98 Aligned_cols=233 Identities=17% Similarity=0.217 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (603)
Q Consensus 347 ~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (603)
+++.+..+++.+...++++..+.+.++.+.+|||+||||+.+.+.++.+++... +...+.+..+.+.++++.++++++.
T Consensus 217 dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~ 295 (466)
T PRK10549 217 DELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLH 295 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666677788899999999999999999999999985432 2234567888999999999999999
Q ss_pred hhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcE
Q 007463 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (603)
Q Consensus 427 d~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (603)
++++.+.+...+..+++++.+++++++..++.....+++.+.++++++. .+.+|+..+.|++.||++||++|++++|.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~ 373 (466)
T PRK10549 296 QLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGS 373 (466)
T ss_pred HHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999999999999999999999999999999998889999999887653 58899999999999999999999999999
Q ss_pred EEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccC---CCCCCCchHHHHHHH
Q 007463 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---EGIEDRMSFSVCKKL 583 (603)
Q Consensus 507 i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---~~~G~GLGL~i~k~i 583 (603)
|.|.+...++ .+.|+|.|+|+|||++.++++|++|++..+. ..+|+||||++|+++
T Consensus 374 I~i~~~~~~~---------------------~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i 432 (466)
T PRK10549 374 LHISAEQRDK---------------------TLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNI 432 (466)
T ss_pred EEEEEEEcCC---------------------EEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHH
Confidence 9999877644 3889999999999999999999999885432 346899999999999
Q ss_pred HHHhCCeec---cCCcceEEEEC
Q 007463 584 VQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 584 v~~~gG~I~---~~g~Gt~f~it 603 (603)
+++|||+++ .+++||+|+|+
T Consensus 433 ~~~~~G~l~~~s~~~~G~~~~i~ 455 (466)
T PRK10549 433 VEAHNGRIIAAHSPFGGVSITVE 455 (466)
T ss_pred HHHcCCEEEEEECCCCeEEEEEE
Confidence 999999999 67889999874
No 26
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=7e-29 Score=281.78 Aligned_cols=233 Identities=9% Similarity=0.123 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (603)
Q Consensus 347 ~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (603)
+|+.+..+.+.+...++++..+...++.+.++||+|||++.|.+.++.+.....+++..++++.+.+.++++..+++++.
T Consensus 462 DEIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~ 541 (703)
T TIGR03785 462 DEIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMS 541 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777777777889999999999999999999999998766677778899999999999999999999
Q ss_pred hhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcE
Q 007463 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (603)
Q Consensus 427 d~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (603)
++++++.+....+.+++++.+++++++..++.....+++.+.++ .+.. .+.+|+..+.|++.||++||+||+++++.
T Consensus 542 ~~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~--~~~~-~i~~d~~~L~~il~NLI~NAik~s~~~~~ 618 (703)
T TIGR03785 542 EATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIP--ETPL-VMRGSPELIAQMLDKLVDNAREFSPEDGL 618 (703)
T ss_pred HHHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEec--CCCe-EEEECHHHHHHHHHHHHHHHHHHCCCCCe
Confidence 99999888777788999999999999999998888776666554 3322 69999999999999999999999999999
Q ss_pred EEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc---CCCCCCCchHHHHHHH
Q 007463 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKL 583 (603)
Q Consensus 507 i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (603)
|.|++...++ .+.|+|+|+|+||+++..+++|++|++.+. ...+|+||||+|||+|
T Consensus 619 I~I~~~~~~~---------------------~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~I 677 (703)
T TIGR03785 619 IEVGLSQNKS---------------------HALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLI 677 (703)
T ss_pred EEEEEEEcCC---------------------EEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHH
Confidence 9998876543 388999999999999999999999986432 2235899999999999
Q ss_pred HHHhCCeec---cC-CcceEEEEC
Q 007463 584 VQVRISIKF---PA-YVFTCFRVT 603 (603)
Q Consensus 584 v~~~gG~I~---~~-g~Gt~f~it 603 (603)
++.|||+|+ .+ ++|++|+|+
T Consensus 678 v~~~gG~I~v~s~~~g~Gt~f~I~ 701 (703)
T TIGR03785 678 ADFHQGRIQAENRQQNDGVVFRIS 701 (703)
T ss_pred HHHcCCEEEEEECCCCCeEEEEEE
Confidence 999999999 33 479999984
No 27
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=3.2e-26 Score=251.09 Aligned_cols=232 Identities=12% Similarity=0.124 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVM 426 (603)
Q Consensus 348 ~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll 426 (603)
++....+.+.+..++.++..+.+.+|.+.++||||||++.|.+.++.+.+... ..+..+.+..+.++..++..++++++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll 319 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDML 319 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555656667889999999999999999999988764333 33456678888889999999999999
Q ss_pred hhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcE
Q 007463 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (603)
Q Consensus 427 d~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (603)
++++.+.+....+.+++++.++++++...++.....+++.+.++. +.+ .+.+|+..+.+++.|+++||+||+++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~d~~~l~~vl~nll~Na~~~~~~~~~ 396 (482)
T PRK09835 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--DPC-QVAGDPLMLRRAISNLLSNALRYTPAGEA 396 (482)
T ss_pred HHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--CCc-EEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999999888888889999999999999999988888888877653 323 69999999999999999999999888888
Q ss_pred EEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc---CCCCCCCchHHHHHHH
Q 007463 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKL 583 (603)
Q Consensus 507 i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (603)
|.|++...++. +.|+|.|+|+|||++..+++|++|++... ++.+|+||||+|||++
T Consensus 397 I~i~~~~~~~~---------------------~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i 455 (482)
T PRK09835 397 ITVRCQEVDHQ---------------------VQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSI 455 (482)
T ss_pred EEEEEEEeCCE---------------------EEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHH
Confidence 99988766432 88999999999999999999999987432 2446999999999999
Q ss_pred HHHhCCeec--cCCcceEEEEC
Q 007463 584 VQVRISIKF--PAYVFTCFRVT 603 (603)
Q Consensus 584 v~~~gG~I~--~~g~Gt~f~it 603 (603)
++.|||+|+ ..++||+|+|+
T Consensus 456 ~~~~~g~i~~~s~~~g~~~~i~ 477 (482)
T PRK09835 456 VVAHKGTVAVTSDARGTRFVIS 477 (482)
T ss_pred HHHCCCEEEEEECCCcEEEEEE
Confidence 999999999 45679999974
No 28
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.97 E-value=1.1e-28 Score=256.18 Aligned_cols=212 Identities=19% Similarity=0.258 Sum_probs=186.7
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHH
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDV--NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~--~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~ 446 (603)
.+.+|.+.++||+||||++|.++++++... ..+++.+++++.|.+.++++..++++++++++.+.+......+++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 445689999999999999999999988754 334556788999999999999999999999999988888888999999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccc
Q 007463 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWA 526 (603)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~ 526 (603)
++++.+...+......+++.+.++.+++ + .+.+|+..+.+++.||+.||++|.++++.|.|++...++.
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~~-~-~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~--------- 261 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDGG-V-DVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGGG--------- 261 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCCC-c-eEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCCE---------
Confidence 9999999999999999999999988433 4 7999999999999999999999988889999988765432
Q ss_pred cccccCCCCceEEEEEEEEcCCCCCccccccccccccccc---cCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEE
Q 007463 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRI---VNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCF 600 (603)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~---~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f 600 (603)
+.|.|.|+|+|||++..+++|++|++.. +.+.+|+|+||++|+.+++.|||+++ .+++||+|
T Consensus 262 ------------~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~ 329 (333)
T TIGR02966 262 ------------AEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTF 329 (333)
T ss_pred ------------EEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCCeEE
Confidence 8899999999999999999999998532 23457999999999999999999999 67899999
Q ss_pred EEC
Q 007463 601 RVT 603 (603)
Q Consensus 601 ~it 603 (603)
+|+
T Consensus 330 ~i~ 332 (333)
T TIGR02966 330 SFI 332 (333)
T ss_pred EEE
Confidence 985
No 29
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.96 E-value=4.3e-28 Score=263.84 Aligned_cols=232 Identities=19% Similarity=0.232 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDV 425 (603)
Q Consensus 347 ~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 425 (603)
+++.+..+++.+..+++.+..+...++.+.++||+||||+++.+.++.+.... ..++..++++.+.+..+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666778999999999999999999998876433 33445778999999999999999999
Q ss_pred HhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCc
Q 007463 426 MDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG 505 (603)
Q Consensus 426 ld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g 505 (603)
+++++.+........+++++.++++++++.+...+..+++.+.++ .+ ..+.+|+..+.+++.|+++||+||.++++
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999998888888999999999999999998888888776664 33 36999999999999999999999988889
Q ss_pred EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc---CCCCCCCchHHHHHH
Q 007463 506 TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKK 582 (603)
Q Consensus 506 ~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~ 582 (603)
.|.|++...++. +.|+|.|+|+|||++..+++|++|++... .+.+|+||||+|||+
T Consensus 374 ~I~i~~~~~~~~---------------------~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~ 432 (457)
T TIGR01386 374 TITVRIERRSDE---------------------VRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRS 432 (457)
T ss_pred eEEEEEEecCCE---------------------EEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHH
Confidence 999988776442 88999999999999999999999997432 346799999999999
Q ss_pred HHHHhCCeec--cCCcceEEEEC
Q 007463 583 LVQVRISIKF--PAYVFTCFRVT 603 (603)
Q Consensus 583 iv~~~gG~I~--~~g~Gt~f~it 603 (603)
+++.|||+++ .+++||+|+++
T Consensus 433 ~~~~~~G~~~~~~~~~G~~~~~~ 455 (457)
T TIGR01386 433 IMEAHGGRASAESPDGKTRFILR 455 (457)
T ss_pred HHHHCCCEEEEEeCCCceEEEEe
Confidence 9999999998 77889999984
No 30
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=1.3e-27 Score=250.93 Aligned_cols=212 Identities=14% Similarity=0.171 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHH
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~l 448 (603)
.+++|++.++||+||||++|.|+++++.+...+++.+++++.+.+.++++..++++++++.+... ..+.+++.+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 44679999999999999999999999886555667788999999999999999999998766432 347799999
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccC-CCCcEEEEEEEeecCCCCcccccccc
Q 007463 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCN-SRRGTVLFRVVSENGSQDRNDKKWAT 527 (603)
Q Consensus 449 i~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~-~~~g~i~i~v~~~~~~~~~~~~~~~~ 527 (603)
++.+...+.... .+++.+.++.+++.| .+.+|+.++.||+.||++||++|+ ++++.|.|++........ .
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~-~------ 273 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTL-H------ 273 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEcccccccc-C------
Confidence 999888777554 467888888877777 699999999999999999999987 778888887754311000 0
Q ss_pred ccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
-......+.++|.|+|+|||++..+++|++|++.+ .+|+||||+|||++|+.|||+|+ .+| ||+|+|+
T Consensus 274 ----~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~---~~g~GlGL~i~~~iv~~~gG~i~~~s~~~-~~~f~i~ 344 (348)
T PRK11073 274 ----GERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR---EGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVY 344 (348)
T ss_pred ----CccCCceEEEEEEeCCCCCCHHHHhhccCCcccCC---CCCccCCHHHHHHHHHHcCCeEEEEecCC-ceEEEEE
Confidence 00112246799999999999999999999997643 46999999999999999999999 445 6999874
No 31
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.96 E-value=4.2e-27 Score=254.76 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (603)
Q Consensus 347 ~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (603)
+++.+..+.+.+..++.++.++.+..|++.+||||||||+.|.+.++++.++ .....+.+.+..+++..++++++
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l 280 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFI 280 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666777788889999999999999999999988876432 23355678889999999999999
Q ss_pred hhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcE
Q 007463 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (603)
Q Consensus 427 d~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (603)
+++|.+.+ ...+++++.+++++++.... ..+..+.++++.+.. .+.+|+..+.+++.||++||+||+ ++.
T Consensus 281 ~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~~~-~~~~~~~~l~~il~NLl~NA~k~~--~~~ 350 (435)
T PRK09467 281 DYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPGPI-EVPMNPIAIKRALANLVVNAARYG--NGW 350 (435)
T ss_pred HHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCCCc-eEEECHHHHHHHHHHHHHHHHHhC--CCe
Confidence 99987543 34578999999999887654 355567777665533 799999999999999999999985 567
Q ss_pred EEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc-CCCCCCCchHHHHHHHHH
Q 007463 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 507 i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~ 585 (603)
|.|++...++ .+.|+|.|+|+||+++..+++|++|++... ++.+|+|+||+||+++++
T Consensus 351 i~i~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 351 IKVSSGTEGK---------------------RAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARGSSGTGLGLAIVKRIVD 409 (435)
T ss_pred EEEEEEecCC---------------------EEEEEEEecCCCcCHHHHHHhcCCcccCCCCCCCCCeehhHHHHHHHHH
Confidence 8888765533 388999999999999999999999998433 345799999999999999
Q ss_pred HhCCeec---cCCcceEEEEC
Q 007463 586 VRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 586 ~~gG~I~---~~g~Gt~f~it 603 (603)
.|||++. .+++|++|+++
T Consensus 410 ~~~g~l~i~~~~~~G~~~~i~ 430 (435)
T PRK09467 410 QHNGKVELGNSEEGGLSARAW 430 (435)
T ss_pred HCCCEEEEEECCCCcEEEEEE
Confidence 9999998 67889999874
No 32
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.95 E-value=6.6e-27 Score=255.65 Aligned_cols=232 Identities=12% Similarity=0.148 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (603)
Q Consensus 347 ~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (603)
+++.+..+.+.+...++++ .+...++++.++||+|||++.+.+.++.+++...+++.+++++.+.+.++++..++++++
T Consensus 234 dEi~~l~~~~~~m~~~l~~-~~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 312 (475)
T PRK11100 234 SELRELAQALESMRVKLEG-KAYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLL 312 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555444433 234567889999999999999999999988654455678899999999999999999999
Q ss_pred hhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcE
Q 007463 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (603)
Q Consensus 427 d~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (603)
++++++........+++++.++++++...++..+..+++.+.++.+ +..+.+|...+.+++.|++.||+||.++++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~ 389 (475)
T PRK11100 313 ELARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGT 389 (475)
T ss_pred HHHhcccCCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999988877777899999999999999999999999999888766 2369999999999999999999999888899
Q ss_pred EEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccc--cCCCCCCCchHHHHHHHH
Q 007463 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRI--VNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 507 i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~--~~~~~G~GLGL~i~k~iv 584 (603)
|.|++...++. +.++|+|+|+|||++.++++|++|++.. +...+|+||||++|++++
T Consensus 390 i~i~~~~~~~~---------------------~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~~~ 448 (475)
T PRK11100 390 ITLSAEVDGEQ---------------------VALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVA 448 (475)
T ss_pred EEEEEEEcCCE---------------------EEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHH
Confidence 99998866443 8899999999999999999999998643 234579999999999999
Q ss_pred HHhCCeec---cCCcceEEEEC
Q 007463 585 QVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 585 ~~~gG~I~---~~g~Gt~f~it 603 (603)
+.|||+++ .+++||+|+|+
T Consensus 449 ~~~~G~i~i~s~~~~Gt~v~i~ 470 (475)
T PRK11100 449 RLHGGEVTLRNRPEGGVLATLT 470 (475)
T ss_pred HHCCCEEEEEEcCCCeEEEEEE
Confidence 99999988 67789999874
No 33
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=251.41 Aligned_cols=229 Identities=11% Similarity=0.107 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (603)
Q Consensus 347 ~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (603)
+++.+..+.+.+..+++++....+.+|.+.+|||+||||+.|.+..+++......+ ..+..+.+.++++.+++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666667666777788999999999999999999998886433222 246778889999999999999
Q ss_pred hhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcE
Q 007463 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (603)
Q Consensus 427 d~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (603)
++++.+.. ..+..+.+++.++++++++.++.....+++.+.++.+++ +..+.+|+..+.+++.||++||+||.+ +.
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~--~~ 372 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH--TK 372 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC--Cc
Confidence 99997664 356778999999999999998888888888888875444 337999999999999999999999864 45
Q ss_pred EEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc---CCCCCCCchHHHHHHH
Q 007463 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKL 583 (603)
Q Consensus 507 i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (603)
|.|++...++ .+.|+|.|+|+||+++.++++|++|++... +..+|+||||+||+++
T Consensus 373 i~i~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~ 431 (461)
T PRK09470 373 IEVAFSVDKD---------------------GLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENA 431 (461)
T ss_pred EEEEEEEECC---------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHH
Confidence 7777765543 288999999999999999999999987432 2456999999999999
Q ss_pred HHHhCCeec---cCCcceEEEEC
Q 007463 584 VQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 584 v~~~gG~I~---~~g~Gt~f~it 603 (603)
++.|||++. .+++||+|+++
T Consensus 432 v~~~~G~l~~~s~~~~Gt~~~i~ 454 (461)
T PRK09470 432 IQQHRGWVKAEDSPLGGLRLTIW 454 (461)
T ss_pred HHHCCCEEEEEECCCCeEEEEEE
Confidence 999999998 67889999874
No 34
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.95 E-value=5.2e-25 Score=229.58 Aligned_cols=203 Identities=13% Similarity=0.152 Sum_probs=162.9
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhc---cCCCHH---HHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeee
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQD---VNLNSD---QRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRS 442 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~---~~~~~~---~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~ 442 (603)
+=++-..-++||+|||||-|...++-|.. ...+++ .++..++|.++.+.+.++|++...|+|+-. +++++
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e~ 560 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLEK 560 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCc
Confidence 33556678999999999999999998873 223332 367899999999999999999999999754 55679
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCC-------CCcEEEEEEEeec
Q 007463 443 FRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNS-------RRGTVLFRVVSEN 515 (603)
Q Consensus 443 ~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~-------~~g~i~i~v~~~~ 515 (603)
.||+++++++....+.. ...+.|..+...+ |.....|+..+.|++.||+.||.++-. +.+.|+++....+
T Consensus 561 ~dL~~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~ 637 (712)
T COG5000 561 SDLRALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDAD 637 (712)
T ss_pred chHHHHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCC
Confidence 99999999999887643 3567888888877 767788999999999999999998532 1233444443332
Q ss_pred CCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---
Q 007463 516 GSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF--- 592 (603)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~--- 592 (603)
+ .+++.|.|||.|.|.+...++|+||.+++ .+||||||+|+|+|||.|||+++
T Consensus 638 g---------------------~i~v~V~DNGkG~p~e~r~r~~EPYvTtr---~KGTGLGLAiVKkIvEeHGG~leL~d 693 (712)
T COG5000 638 G---------------------RIVVDVIDNGKGFPRENRHRALEPYVTTR---EKGTGLGLAIVKKIVEEHGGRLELHN 693 (712)
T ss_pred C---------------------eEEEEEecCCCCCChHHhhhhccCceecc---cccccccHHHHHHHHHhcCCeEEecC
Confidence 2 39999999999999999999999996543 46999999999999999999999
Q ss_pred c-CCcceEEEE
Q 007463 593 P-AYVFTCFRV 602 (603)
Q Consensus 593 ~-~g~Gt~f~i 602 (603)
. .-.|++++|
T Consensus 694 a~d~~GA~i~i 704 (712)
T COG5000 694 APDFDGAMIRI 704 (712)
T ss_pred CCCCCCcEEEE
Confidence 3 234888776
No 35
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=7.3e-26 Score=254.37 Aligned_cols=207 Identities=16% Similarity=0.254 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHH
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~l 448 (603)
...++++.++||+||||+.|.++++++.....+++..++++.|.+.++++..++++++++++.... ..+++++.++
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 346789999999999999999999998766556777899999999999999999999999987543 3568999999
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccc
Q 007463 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATW 528 (603)
Q Consensus 449 i~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~ 528 (603)
++++...+......+++.+.++.+++++ .+.+|+..+.+++.|++.||+||..++|.|.|++...++.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~----------- 532 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG----------- 532 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-----------
Confidence 9999999998877888999998888877 6999999999999999999999888888999988765321
Q ss_pred cccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 529 RQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 529 ~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
.+.++|+|+|+|||++..+++|++|++.. ..|+|+||++||.++++|||+++ .+|+||+|+|+
T Consensus 533 ---------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~---~~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~ 598 (607)
T PRK11360 533 ---------QVAVSIEDNGCGIDPELLKKIFDPFFTTK---AKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLY 598 (607)
T ss_pred ---------EEEEEEEeCCCCCCHHHHhhhcCCceeCC---CCCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEE
Confidence 18899999999999999999999998643 45899999999999999999999 67889999984
No 36
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-24 Score=224.27 Aligned_cols=209 Identities=19% Similarity=0.315 Sum_probs=177.1
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCC-ccceeeeeeHHH
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGR-FPLEIRSFRLHA 447 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~-~~l~~~~~~l~~ 447 (603)
.+..|++.++||+|||++.+.+.++.+... ..+.+++.+..+....+++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988866543 222267788889999999999999999999998763 344467888999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCcccccccc
Q 007463 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (603)
Q Consensus 448 li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~ 527 (603)
+++++...+......+++.+....++ +..+.+|+.++.|++.||+.||+||.+ ++.|.|.+...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~----------- 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLPE--LPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDE----------- 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCC--CceEeeCHHHHHHHHHHHHHHHhccCC-CCeEEEEEEecCC-----------
Confidence 99999999999888888888866542 226999999999999999999999988 8999999987643
Q ss_pred ccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
++.++|.|+|+||+++..+++|++|++...... |+|+||++||++++.|||++. .++.||+|+|+
T Consensus 259 ----------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~-g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~ 326 (336)
T COG0642 259 ----------QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS-GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIR 326 (336)
T ss_pred ----------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC-CCCccHHHHHHHHHHcCCEEEEEecCCCceEEEEE
Confidence 499999999999999999999999988654322 999999999999999999988 55689999874
No 37
>PRK13557 histidine kinase; Provisional
Probab=99.94 E-value=5.2e-25 Score=244.66 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeee
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-----LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~-----~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~ 443 (603)
....++..++||+||||+.|.++++++.+.. ......+.++.+.+.++++..++++++++++.. ......+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3456889999999999999999999886321 234456789999999999999999999998853 3445678
Q ss_pred eHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCcccc
Q 007463 444 RLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDK 523 (603)
Q Consensus 444 ~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~ 523 (603)
++.++++.+...+... ..+++.+.++.++++| .+.+|+.++.|++.||+.||+||.+.++.+.|++....... .
T Consensus 238 ~l~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~----~ 311 (540)
T PRK13557 238 NLNGLVSGMGELAERT-LGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIED----E 311 (540)
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCc----c
Confidence 9999999887776543 3467788887777766 69999999999999999999999998999888776432110 0
Q ss_pred ccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEE
Q 007463 524 KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCF 600 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f 600 (603)
.+..+... ..+..+.|+|.|+|+|||++..+++|++|++... ..+|+||||+|||++++.|||+|+ .+|+||+|
T Consensus 312 ~~~~~~~~--~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~-~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f 388 (540)
T PRK13557 312 DLAMYHGL--PPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE-EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTV 388 (540)
T ss_pred ccccccCC--CCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC-CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEE
Confidence 01111110 1234588999999999999999999999987543 346999999999999999999999 67899999
Q ss_pred EEC
Q 007463 601 RVT 603 (603)
Q Consensus 601 ~it 603 (603)
+|+
T Consensus 389 ~i~ 391 (540)
T PRK13557 389 RLY 391 (540)
T ss_pred EEE
Confidence 984
No 38
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-27 Score=271.89 Aligned_cols=570 Identities=38% Similarity=0.466 Sum_probs=465.7
Q ss_pred CCCCCCcccccCCCC-CCChhhhHHHHhhhhHHHHHHHhhHhHHHHHHHhcCCC--CchHHHHHHHHHHHHHhhHHHhHH
Q 007463 23 GDNNFPRCNCDDDAS-SWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNV--PFKWVLIQFIAFIVLCGLTHLLNG 99 (603)
Q Consensus 23 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sd~~ia~a~~~i~~~l~~~~~~~~~--~~~~~~~l~~~~i~~~~~~~~~~~ 99 (603)
.++.+.+|||+|..+ .+.....+..++.+|++++.||+++|.+++||...... .+.|....+.+++..|+.+|..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 104 (786)
T KOG0519|consen 25 DDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNG 104 (786)
T ss_pred CCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchh
Confidence 446799999998754 44455566779999999999999999999999887743 378999999999999999999999
Q ss_pred hh-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHH
Q 007463 100 WT-YGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKK---AWDLGREVGIIMKQKEAGVHVRML 175 (603)
Q Consensus 100 ~~-~~~~~~~~~~~~~~~~~lt~lv~~~~ai~l~~li~~~l~~~~~e~~l~~~---~~~l~~~~~~~~~~~~~~~~l~~l 175 (603)
|+ +.++..++..+.+..+.+++.+++.++......+|..+..+.++.+.+.+ +.++.++........+.....+++
T Consensus 105 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~ 184 (786)
T KOG0519|consen 105 WTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRML 184 (786)
T ss_pred hhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeee
Confidence 99 58888888888899999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCC--CCCCceecCChhHHHHHhcCCeEE
Q 007463 176 TQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYS--DMCSSIPITDQDVVRIKGSDGVNI 253 (603)
Q Consensus 176 t~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 253 (603)
+..++.+.+.+.+++.+..++.+.+..+.++.|.+.+........|++...... ......+..++++...+.+.....
T Consensus 185 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 264 (786)
T KOG0519|consen 185 THEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRVSA 264 (786)
T ss_pred eeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999876666677777654210 011233444555555555544433
Q ss_pred eCCCchhhhccCCCc--ccCCceeEEEecceeccccCCC-cchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHH
Q 007463 254 LGPDSELAAASSGES--VESGPVAAIRMPMLRVSNFKGG-TPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVL 330 (603)
Q Consensus 254 ~~~~~~~~~~~~~~~--~~~~~~~~l~~Pl~~~~~~~g~-~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a 330 (603)
....+.+........ ...+...+.++|+....++.+. +++....++++.++.++...++.|..++.++-+.++++++
T Consensus 265 ~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~ 344 (786)
T KOG0519|consen 265 KSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVS 344 (786)
T ss_pred cccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhcc
Confidence 333222222211111 2345667788888887777765 7788889999999999998899999999999999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-HhccCCCHHHHHH
Q 007463 331 VALS--HAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSI-MQDVNLNSDQRMI 407 (603)
Q Consensus 331 ~al~--~a~l~ee~~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~l-L~~~~~~~~~~~~ 407 (603)
.++. ++.-.++....++++.+++.+++.++++..++...+..++..++|.+|+|.+.+.+.... ++...+.+++.-.
T Consensus 345 naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~ 424 (786)
T KOG0519|consen 345 NAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLE 424 (786)
T ss_pred ceecccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCcee
Confidence 9998 887788888889999999999999999999999999999999999999999999999884 4455566777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHH
Q 007463 408 VETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVF 487 (603)
Q Consensus 408 l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~ 487 (603)
++...+..+.+..+++.-.+.++...|.-......+.+..+++..++..++....+.+.+.+.+..+.|..+.+|+.+..
T Consensus 425 i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 504 (786)
T KOG0519|consen 425 IQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLF 504 (786)
T ss_pred EehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhh
Confidence 88999999999999999999999887777777889999999999999999999889899999998888889999999999
Q ss_pred HHHHHHHHhhcc--cCCCCcEEEEEEEee--cCCCCcc-ccccccccccCCCCceEEEEEEEEcCCCCCccccccccccc
Q 007463 488 QVILHMVGSLLN--CNSRRGTVLFRVVSE--NGSQDRN-DKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLG 562 (603)
Q Consensus 488 qvl~NLl~NAik--~~~~~g~i~i~v~~~--~~~~~~~-~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f 562 (603)
|++.++.+++.+ ++..+....+++... +..-+.. +..+..|....+..+-.+.+.++++..++...+....+..+
T Consensus 505 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 584 (786)
T KOG0519|consen 505 QIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLH 584 (786)
T ss_pred hhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhh
Confidence 999999999998 677776545555444 2221111 33445555555555556888999999999888888777666
Q ss_pred cccccCC---CCCCCchHHHHHHHHHHhCCeec
Q 007463 563 IRRIVNE---GIEDRMSFSVCKKLVQVRISIKF 592 (603)
Q Consensus 563 ~~~~~~~---~~G~GLGL~i~k~iv~~~gG~I~ 592 (603)
.+.+... ..+.+++++.|.+..+.++|.++
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (786)
T KOG0519|consen 585 KSLRDLTSKLSSGSGLSLALCPENSQLMEGNIG 617 (786)
T ss_pred hccccchhhcccccccccccchhhHHhhhcccc
Confidence 5433221 35788999999999999999988
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-24 Score=253.99 Aligned_cols=204 Identities=7% Similarity=0.046 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCcc
Q 007463 358 QAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFP 437 (603)
Q Consensus 358 ~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~ 437 (603)
+++++++++.+.++.|++.||||+||||++|.|+++++.+...+++.+.++..+.+....+....+.+...
T Consensus 593 ~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 663 (807)
T PRK13560 593 HAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS--------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 33444555567788999999999999999999999998766666677777777766666666666655432
Q ss_pred ceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCC---cEEEEEEEee
Q 007463 438 LEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR---GTVLFRVVSE 514 (603)
Q Consensus 438 l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~---g~i~i~v~~~ 514 (603)
.+..++++.++++++...+......++..+.+.++.+.+.....+...+.||+.||++||+||+.++ |.|+|++...
T Consensus 664 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 743 (807)
T PRK13560 664 EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIREQ 743 (807)
T ss_pred ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEEc
Confidence 2345789999999999999887776666666666655443444566778999999999999987543 6777777654
Q ss_pred cCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec-c
Q 007463 515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF-P 593 (603)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~-~ 593 (603)
++ .++.|+|+|||+|||++.. ...|+||||+|||+||+.|||+|+ .
T Consensus 744 ~~--------------------~~v~i~V~D~G~GI~~~~~-------------~~~~~gLGLai~~~iv~~~gG~I~v~ 790 (807)
T PRK13560 744 GD--------------------GMVNLCVADDGIGLPAGFD-------------FRAAETLGLQLVCALVKQLDGEIALD 790 (807)
T ss_pred CC--------------------CEEEEEEEeCCCcCCcccc-------------ccccCCccHHHHHHHHHHcCCEEEEE
Confidence 22 2489999999999998731 123678999999999999999999 6
Q ss_pred CCcceEEEEC
Q 007463 594 AYVFTCFRVT 603 (603)
Q Consensus 594 ~g~Gt~f~it 603 (603)
.++||+|+|+
T Consensus 791 S~~Gt~F~i~ 800 (807)
T PRK13560 791 SRGGARFNIR 800 (807)
T ss_pred cCCceEEEEE
Confidence 6789999985
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.92 E-value=4.8e-23 Score=225.32 Aligned_cols=244 Identities=10% Similarity=0.117 Sum_probs=171.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 007463 314 WSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKD-ALMASQARNAFQKVMSNGMRRPMHSILGLL 392 (603)
Q Consensus 314 ~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~a~~~-~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~ 392 (603)
|.....+++-.++.++...+--....++.++.+++++++.++.++..++ .+..++.++++.+.++||+|+||++|.+.+
T Consensus 245 ~~~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~a 324 (495)
T PRK11644 245 WHDHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQA 324 (495)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 4444445555555555444433333333333333333322222222111 222345677899999999999999999999
Q ss_pred HHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEE
Q 007463 393 SIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEV 471 (603)
Q Consensus 393 ~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~ 471 (603)
+++++... +++.++..+.|.+.+.++.+.++++++..+. ...+++++.+.++++++.+.... +++.++++.
T Consensus 325 ~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L~~~l~~l~~~l~~~~--~~~~v~l~~ 396 (495)
T PRK11644 325 GIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTLEQAIRSLMREMELED--RGIVSHLDW 396 (495)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCHHHHHHHHHHHHHHhh--cCceEEEEe
Confidence 98875433 3445678899999999999999999876652 23457899999999998876544 444555544
Q ss_pred CCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCC
Q 007463 472 DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQ 551 (603)
Q Consensus 472 ~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~ 551 (603)
+.+.+.....|+..+.|++.|+++||+||.+ .+.|.|++..+++ .+.++|+|||+|||
T Consensus 397 ~~~~~~l~~~~~~~L~ril~nlL~NAiKha~-~~~I~I~l~~~~~---------------------~i~l~V~DnG~Gi~ 454 (495)
T PRK11644 397 RIDESALSETQRVTLFRVCQEGLNNIVKHAD-ASAVTLQGWQQDE---------------------RLMLVIEDDGSGLP 454 (495)
T ss_pred cCCcccCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEEcCC---------------------EEEEEEEECCCCCC
Confidence 3322225677888899999999999999754 5678888876543 38999999999998
Q ss_pred ccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec-cCCcceEEEEC
Q 007463 552 PEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF-PAYVFTCFRVT 603 (603)
Q Consensus 552 ~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~-~~g~Gt~f~it 603 (603)
+++ .|+|+||++||+++++|||+++ ..++||+|+|+
T Consensus 455 ~~~----------------~~~GLGL~ivr~iv~~~GG~i~v~S~~Gt~f~I~ 491 (495)
T PRK11644 455 PGS----------------GQQGFGLRGMRERVTALGGTLTISCTHGTRLSVS 491 (495)
T ss_pred cCC----------------CCCCCcHHHHHHHHHHcCCEEEEEcCCCEEEEEE
Confidence 762 2679999999999999999999 55889999984
No 41
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.92 E-value=7.3e-21 Score=213.00 Aligned_cols=339 Identities=11% Similarity=0.075 Sum_probs=219.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCe-e-EEEEEecCCCCCCCCCce
Q 007463 158 EVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTE-M-NLTHQLNGRNYSDMCSSI 235 (603)
Q Consensus 158 ~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~-l-~~~~~~~~~~~~~~~~~i 235 (603)
+...++++.+....||..++.+..+.+..+.++.++.++.+.++++.+.+-+.+++... + ...+. . ..
T Consensus 208 ~t~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~--------~~ 277 (569)
T PRK10600 208 KTAGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQ--S--------DM 277 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCC--C--------cc
Confidence 33345666667778999999999999999999999999999999998887665533221 1 11100 0 00
Q ss_pred ecCChhHHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCc
Q 007463 236 PITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWS 315 (603)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~ 315 (603)
...+..... .... ..+ ......+..+|+...... .|++.........++
T Consensus 278 ~~~~~~~~~--------~~~~----~~~------~~~~~~~~~~~l~~~~~~-------------~G~~~~~~~~~~~l~ 326 (569)
T PRK10600 278 TCDDKGCQL--------CPRG----VLP------VGDRGTTLKWRLSDKHGQ-------------YGILLATLPQGRHLS 326 (569)
T ss_pred Ccccccccc--------cccc----CCC------cCCCCceEEEEeecCCcc-------------eEEEEEEcCCCCCCC
Confidence 000000000 0000 000 001135678888755444 344444444456789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 007463 316 NQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIM 395 (603)
Q Consensus 316 ~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL 395 (603)
+++.++++.++.+++.+++..+..++ + +++.. .+ .+..+...+-|.+..+|+.+...++.+
T Consensus 327 ~~~~~ll~~l~~~l~~~l~~~~~~~~----~-------~~~~~----~~----er~~iarelhd~i~~~L~~l~~~~~~l 387 (569)
T PRK10600 327 HDQQQLVDTLVEQLTATLALERQQER----Q-------QQLIV----ME----ERATIARELHDSIAQSLSCMKMQVSCL 387 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHH----HH----HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999988765432211 0 00110 01 111222233333344556666555555
Q ss_pred hc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECC
Q 007463 396 QD--VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDR 473 (603)
Q Consensus 396 ~~--~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~ 473 (603)
+. ...+++.++.++.|.+..+++...+.+++...+.. .++.++.+.+++++..+.... ++.+.++.+.
T Consensus 388 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~ 457 (569)
T PRK10600 388 QMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSARF---GFPVKLDYQL 457 (569)
T ss_pred HhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHHHh---CCeEEEEecC
Confidence 42 33456778899999999999999999999877642 346788899999888877554 3445554432
Q ss_pred CCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 474 SLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 474 ~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
+.+.....++..+.|++.|+++||+||++ .+.|.|++...++ .+.++|.|+|+|||++
T Consensus 458 ~~~~~~~~~~~~l~~il~ell~NA~kha~-a~~i~V~~~~~~~---------------------~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 458 PPRLVPSHQAIHLLQIAREALSNALKHAQ-ASEVVVTVAQNQN---------------------QVKLSVQDNGCGVPEN 515 (569)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEEEEcCC---------------------EEEEEEEECCCCCCcc
Confidence 21111222445699999999999999764 4678888765533 3889999999999886
Q ss_pred ccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 554 VSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 554 ~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
. ..++|+||+|||++++.|||+++ .+|+||+|+|+
T Consensus 516 ~---------------~~~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~ 553 (569)
T PRK10600 516 A---------------ERSNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVT 553 (569)
T ss_pred c---------------cCCCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEE
Confidence 3 12679999999999999999999 77889999874
No 42
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.92 E-value=6.1e-23 Score=206.61 Aligned_cols=204 Identities=12% Similarity=0.143 Sum_probs=167.1
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHH
Q 007463 371 NAFQKVMSNGMRRPMHSILGLLSIMQ---DVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (603)
Q Consensus 371 ~~~l~~~sHeLRtPL~~I~g~~~lL~---~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~ 447 (603)
++-..++|||++.||++++.|+-... ++..+...+.+++.|..-.+|+..+|+.+..|+|..+++.++ .|++|.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 44567899999999999999875443 344455568899999999999999999999999998777554 5999999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCC-cEEEEEEEeecCCCCccccccc
Q 007463 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR-GTVLFRVVSENGSQDRNDKKWA 526 (603)
Q Consensus 448 li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~-g~i~i~v~~~~~~~~~~~~~~~ 526 (603)
++..+...+....+.+.+.+.. |.+.| +|.||+.+++||+.|++-||+++.... ..|.+.+....
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~--ptD~~-~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~----------- 595 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLIN--PTDDL-MVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTE----------- 595 (673)
T ss_pred HHHHHHHHHHhhhhhccccccC--Ccccc-eecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCc-----------
Confidence 9999999999998888666655 45656 899999999999999999999975543 44555544322
Q ss_pred cccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEE
Q 007463 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRV 602 (603)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~i 602 (603)
....++.|.|||+|-|-+..+++|.||+.+ +.-|.||||+||..+++.|.|++. .-.+|+++.+
T Consensus 596 ---------~e~l~i~i~DnGqGwp~~l~dkLl~PFtts---K~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL 662 (673)
T COG4192 596 ---------QEMLRIAIIDNGQGWPHELVDKLLTPFTTS---KEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVIL 662 (673)
T ss_pred ---------ccceEEEEecCCCCCchhHHHHhcCCcccc---cccccccchhHHHHHHHHhcCcchHhhhcccCcEEEE
Confidence 224889999999999999999999999754 446999999999999999999998 5566777543
No 43
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.89 E-value=4.2e-22 Score=221.74 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=131.2
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHH-HHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHH
Q 007463 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETM-MKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMI 449 (603)
Q Consensus 371 ~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i-~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li 449 (603)
.++++.++||+||||++|.|++++... ++..+++..+ .+...++..+++++.+ + ++
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-----~~ 396 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKTANNYQEEIGSLLGKIKS--------------P-----VI 396 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHhccC--------------H-----HH
Confidence 345667899999999999999886432 2223333322 2223333333333210 1 12
Q ss_pred HHHHHHHHHHHhhcCcEEEEEECCCCCce-EEecHHHHHHHHHHHHHhhcccCC--CCcEEEEEEEeecCCCCccccccc
Q 007463 450 KEAACLARCLSIYRGFGFSIEVDRSLPDH-VMGDERRVFQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWA 526 (603)
Q Consensus 450 ~~~~~~~~~~~~~~~i~l~~~~~~~lp~~-v~~D~~~l~qvl~NLl~NAik~~~--~~g~i~i~v~~~~~~~~~~~~~~~ 526 (603)
...+......+..+++.+.++.++.+|.. ...+...+.||+.||++||+||.+ +++.|.|++...++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~---------- 466 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNG---------- 466 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCC----------
Confidence 22222233456678888888877666531 122345799999999999999863 46778888766543
Q ss_pred cccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
.+.|+|+|+|+|||++..+++|++|++++ ..|+||||++||++++.|||+|+ .+|+||+|+|+
T Consensus 467 -----------~~~i~V~D~G~gi~~~~~~~iF~~~~~~~---~~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~ 532 (542)
T PRK11086 467 -----------WLHCEVSDDGPGIAPDEIDAIFDKGYSTK---GSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQ 532 (542)
T ss_pred -----------EEEEEEEECCCCCCHHHHHHHHhCCCccC---CCCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEE
Confidence 38899999999999999999999987543 46999999999999999999999 67899999884
No 44
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.88 E-value=1.2e-21 Score=218.47 Aligned_cols=186 Identities=12% Similarity=0.101 Sum_probs=141.2
Q ss_pred HHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHH
Q 007463 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEA 452 (603)
Q Consensus 373 ~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~ 452 (603)
.+..++||++|||++|.|++++- +..+.++.+.+.++++..+++++...... ..+....
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~~l 399 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAGLL 399 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHHHH
Confidence 34568999999999999987642 22456778888888888888888764321 1122211
Q ss_pred HHHHHHHHhhcCcEEEEEECCC---CCceEEecHHHHHHHHHHHHHhhcccC---CC-CcEEEEEEEeecCCCCcccccc
Q 007463 453 ACLARCLSIYRGFGFSIEVDRS---LPDHVMGDERRVFQVILHMVGSLLNCN---SR-RGTVLFRVVSENGSQDRNDKKW 525 (603)
Q Consensus 453 ~~~~~~~~~~~~i~l~~~~~~~---lp~~v~~D~~~l~qvl~NLl~NAik~~---~~-~g~i~i~v~~~~~~~~~~~~~~ 525 (603)
. .....+.++++.+.+..+.+ +| ...|+..+.|++.||++||++|. ++ ++.|.|++...++
T Consensus 400 ~-~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~--------- 467 (545)
T PRK15053 400 F-GKVQRARELGLKMVIVPGSQLSQLP--PGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGD--------- 467 (545)
T ss_pred H-HHHHHHHHhCCceEEcCCCcccccc--ccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCC---------
Confidence 1 12334556777777755433 33 56799999999999999999983 33 3667777765432
Q ss_pred ccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEE
Q 007463 526 ATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRV 602 (603)
Q Consensus 526 ~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~i 602 (603)
.+.++|+|+|+|||++..+++|++|++++....+|+||||+|||++|+.|||+|+ .+|+||+|+|
T Consensus 468 ------------~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i 535 (545)
T PRK15053 468 ------------DVVIEVADQGCGVPESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSI 535 (545)
T ss_pred ------------EEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCCCCCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEE
Confidence 3889999999999999999999999987665556899999999999999999999 6788999998
Q ss_pred C
Q 007463 603 T 603 (603)
Q Consensus 603 t 603 (603)
+
T Consensus 536 ~ 536 (545)
T PRK15053 536 F 536 (545)
T ss_pred E
Confidence 4
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.87 E-value=4.1e-18 Score=178.27 Aligned_cols=188 Identities=14% Similarity=0.141 Sum_probs=141.6
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHH
Q 007463 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIK 450 (603)
Q Consensus 371 ~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~ 450 (603)
.+-+...+||..|-|++|.|++++=. ..+..+.|.+.++.-...++.+..--+ +..+.
T Consensus 334 a~aLRaq~HEfmNkLhtI~GLlql~~-------yd~a~~~I~~~~~~qq~~~~~l~~~i~---------------~~~lA 391 (537)
T COG3290 334 AEALRAQSHEFMNKLHTILGLLQLGE-------YDDALDYIQQESEEQQELIDSLSEKIK---------------DPVLA 391 (537)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHHHHhhhhhhHHHHHHhcc---------------cHHHH
Confidence 35577889999999999999987532 233445555555555555555433211 12334
Q ss_pred HHHHHHHHHHhhcCcEEEEEECCCCCc-eEEecHHHHHHHHHHHHHhhcccCC---CCcEEEEEEEeecCCCCccccccc
Q 007463 451 EAACLARCLSIYRGFGFSIEVDRSLPD-HVMGDERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWA 526 (603)
Q Consensus 451 ~~~~~~~~~~~~~~i~l~~~~~~~lp~-~v~~D~~~l~qvl~NLl~NAik~~~---~~g~i~i~v~~~~~~~~~~~~~~~ 526 (603)
..+---...+++.|+.+.++....+|. .-..+...+--++.||++||+++.- +++.|.+++...++.
T Consensus 392 g~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~--------- 462 (537)
T COG3290 392 GFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDE--------- 462 (537)
T ss_pred HHHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCE---------
Confidence 444344456788999999987776663 2566888899999999999999765 567788888766543
Q ss_pred cccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+.++|+|+||||||+..+++|+..+.+++ ..+.|.||++||+.|+.+||.|+ +.+.||+|++.
T Consensus 463 ------------lvieV~D~G~GI~~~~~~~iFe~G~Stk~--~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~ 528 (537)
T COG3290 463 ------------LVIEVADTGPGIPPEVRDKIFEKGVSTKN--TGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIY 528 (537)
T ss_pred ------------EEEEEeCCCCCCChHHHHHHHhcCccccC--CCCCchhHHHHHHHHHHcCceEEEeeCCCCceEEEEE
Confidence 99999999999999999999999776544 46899999999999999999999 56889999873
No 46
>PRK13559 hypothetical protein; Provisional
Probab=99.84 E-value=5.4e-20 Score=194.27 Aligned_cols=180 Identities=6% Similarity=0.041 Sum_probs=137.8
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHH
Q 007463 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMI 449 (603)
Q Consensus 370 ~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li 449 (603)
+.+|++.++||+||||+.|.|+++++.. ..+..++++.+.+.+.++.++++++++.++ .+++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~---~~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGR---ADDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHHH
Confidence 3568889999999999999999998762 223456788899999999999999987654 3578999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEECCCCCceEEec-HHHHHHHHHHHHHhhccc---CCCCcEEEEEEEeecCCCCcccccc
Q 007463 450 KEAACLARCLSIYRGFGFSIEVDRSLPDHVMGD-ERRVFQVILHMVGSLLNC---NSRRGTVLFRVVSENGSQDRNDKKW 525 (603)
Q Consensus 450 ~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D-~~~l~qvl~NLl~NAik~---~~~~g~i~i~v~~~~~~~~~~~~~~ 525 (603)
++++..+... +..+.++.+ +++ +..+ ...+.||+.||+.||+|| ++++|.|+|++....
T Consensus 238 ~~~~~~~~~~----~~~i~~~~~-~~~--~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~---------- 300 (361)
T PRK13559 238 RAQVAPYAPR----ATRVAFEGP-GIR--LGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSP---------- 300 (361)
T ss_pred HHHHHhhcCC----CceEEEECC-Cee--eCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecC----------
Confidence 9988766432 445555432 221 3322 346999999999999999 567899999883221
Q ss_pred ccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHH-hCCeec--cCCcceEEEE
Q 007463 526 ATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQV-RISIKF--PAYVFTCFRV 602 (603)
Q Consensus 526 ~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~-~gG~I~--~~g~Gt~f~i 602 (603)
.+..+.+.|.|+|.|++++ ..|+|+||.||+++|+. |||+++ ..+.||+|+|
T Consensus 301 ---------~~~~~~i~v~d~G~~~~~~----------------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~~~G~~~~l 355 (361)
T PRK13559 301 ---------EGAGFRIDWQEQGGPTPPK----------------LAKRGFGTVIIGAMVESQLNGQLEKTWSDDGLLARI 355 (361)
T ss_pred ---------CCCeEEEEEECCCCCCCCC----------------CCCCCcHHHHHHHHHHHHcCCeEEEEEcCCeEEEEE
Confidence 1224889999999997654 23789999999999987 999999 4567999998
Q ss_pred C
Q 007463 603 T 603 (603)
Q Consensus 603 t 603 (603)
+
T Consensus 356 ~ 356 (361)
T PRK13559 356 E 356 (361)
T ss_pred E
Confidence 5
No 47
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.81 E-value=2.3e-16 Score=176.77 Aligned_cols=217 Identities=12% Similarity=0.107 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-
Q 007463 316 NQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSI- 394 (603)
Q Consensus 316 ~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~l- 394 (603)
..+.++++.++.+++.++...+..++.++ + ++.+....++||+++|+..+..++..
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~------------~~~~~~~~la~el~~~l~~~l~~~~~~ 385 (565)
T PRK10935 329 CPDEPLMNNVAQMLGRGLYFNQAQKQQQQ-----------L------------LLMEERATIARELHDSLAQVLSYLKIQ 385 (565)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H------------HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45778899999888887754433222100 0 00112234888888888887766553
Q ss_pred ---Hhc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEE
Q 007463 395 ---MQD--VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSI 469 (603)
Q Consensus 395 ---L~~--~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~ 469 (603)
+.. ....++..+.+..+.+...++...+.+++...+. ...++++.+.+++++..++... ++.+.+
T Consensus 386 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~---~~~i~~ 455 (565)
T PRK10935 386 LTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFRL-------TIQEANLGSALEEMLDQLRNQT---DAKITL 455 (565)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCCCCHHHHHHHHHHHHHHhh---CCeEEE
Confidence 332 1223445677888888888888888888765543 3457899999999999887543 333444
Q ss_pred EECCCCCc--eEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcC
Q 007463 470 EVDRSLPD--HVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNE 547 (603)
Q Consensus 470 ~~~~~lp~--~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G 547 (603)
+.+ +|. ....++.++.|++.|++.||+||. +++.+.+.+...+++ .+.++|.|+|
T Consensus 456 ~~~--~~~~~~~~~~~~~l~qv~~nll~NA~k~~-~~~~i~i~~~~~~~~--------------------~~~i~V~D~G 512 (565)
T PRK10935 456 DCR--LPSQALDAQQQVHLLQIIREATLNAIKHA-NASEIAVSCVTNPDG--------------------EHTVSIRDDG 512 (565)
T ss_pred Eee--CCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEEEEEcCCC--------------------EEEEEEEECC
Confidence 332 232 233445669999999999999965 567788887655221 3889999999
Q ss_pred CCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 548 VGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 548 ~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+|||++. ..|+|+||+||+++++.|||+|+ .+|+||+|+|+
T Consensus 513 ~Gi~~~~---------------~~~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~ 556 (565)
T PRK10935 513 IGIGELK---------------EPEGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLT 556 (565)
T ss_pred cCcCCCC---------------CCCCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEE
Confidence 9998742 23789999999999999999999 67889999984
No 48
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.74 E-value=4.1e-18 Score=148.21 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=91.1
Q ss_pred ecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccc
Q 007463 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQ 560 (603)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~ 560 (603)
||+.++.+++.||+.||++|+++++.|.|.+...++. +.|+|.|+|+|||++.++++|+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~---------------------~~i~i~d~G~gi~~~~l~~~~~ 59 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDDH---------------------LSIEISDNGVGIPPEELEKLFE 59 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTE---------------------EEEEEEESSSSTTHHHHHHHCS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCe---------------------EEEEEEeccccccccccccchh
Confidence 6999999999999999999998889999999887543 9999999999999999999999
Q ss_pred ccccccc--CCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 561 LGIRRIV--NEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 561 ~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
++++... ...+|+|+||++|+.++++|+|+++ .+++||+|+|+
T Consensus 60 ~~~~~~~~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~ 107 (111)
T PF02518_consen 60 PFFTSDKSETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFT 107 (111)
T ss_dssp TTSHSSSSSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEE
T ss_pred hcccccccccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEE
Confidence 9876443 2356899999999999999999998 66889999874
No 49
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.68 E-value=3.4e-13 Score=140.36 Aligned_cols=324 Identities=13% Similarity=0.154 Sum_probs=209.3
Q ss_pred HHHHHHHH----HHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCC
Q 007463 153 WDLGREVG----IIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY 228 (603)
Q Consensus 153 ~~l~~~~~----~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~ 228 (603)
+.|++.|. .++++.+.+..||+-++.+..+...++.++.+++.+....++..+.+-+.+++....+..+.-.
T Consensus 225 ~~LE~rV~eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~---- 300 (574)
T COG3850 225 ADLEQRVEEKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQ---- 300 (574)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccC----
Confidence 44444444 5677788888899999999999999999999999999999998887777655422111111000
Q ss_pred CCCCCceecCChhHHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecC
Q 007463 229 SDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPN 308 (603)
Q Consensus 229 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~ 308 (603)
..+.. + + . ..+....+..|+...+.. .|.+..
T Consensus 301 ----~di~~-----------------~-d----~-------~~~~~~~~~~~l~~~g~~-------------Lg~l~~-- 332 (574)
T COG3850 301 ----WDISE-----------------G-D----Q-------PSGLKWPQEDPLTQQGHL-------------LGTLPW-- 332 (574)
T ss_pred ----cceec-----------------C-C----C-------Ccccchhhhcchhhhhhh-------------heeeec--
Confidence 00000 0 0 0 001111122243322222 233332
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 007463 309 EQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSI 388 (603)
Q Consensus 309 ~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I 388 (603)
.+.+...+..+++.++.+++.++...+..++.++ |.- +.+| +.|+.||.--++-.
T Consensus 333 --~~~l~~~d~~Ll~tl~~~L~rtL~~~~~q~~~qQ-----------Lll------mEER------atIAReLHDSiAQs 387 (574)
T COG3850 333 --QRSLPEDDQQLLDTLVQQLGRTLALNKQQEQQQQ-----------LLL------MEER------ATIARELHDSIAQS 387 (574)
T ss_pred --cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH------HHHH------HHHHHHHHHHHHHH
Confidence 4667888999999999999999976653322111 111 1111 23334444444444
Q ss_pred HHH----HHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHh
Q 007463 389 LGL----LSIMQD---VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSI 461 (603)
Q Consensus 389 ~g~----~~lL~~---~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~ 461 (603)
..+ +++|+. +...++.++.+..|++..+..-+-+.+||..-|+ ..+.-++..-+++++..++..
T Consensus 388 LS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~AL~~~~~~f~~q-- 458 (574)
T COG3850 388 LSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPPALEQMLAEFSNQ-- 458 (574)
T ss_pred HHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHHHHHHHHHHHHhc--
Confidence 443 444542 2344556888999999888887777787765443 334556778888888777654
Q ss_pred hcCcEEEEEECCCCCceEEecHH---HHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceE
Q 007463 462 YRGFGFSIEVDRSLPDHVMGDER---RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVH 538 (603)
Q Consensus 462 ~~~i~l~~~~~~~lp~~v~~D~~---~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (603)
-|++++++ ..+|. ...|+. .+-||+..-+.||+| +..+.+|.|++...++.
T Consensus 459 -tg~~~~l~--~qlp~-~~lpa~qqvHlLqIvREAlsNa~K-Ha~As~i~V~~~~~~g~--------------------- 512 (574)
T COG3850 459 -TGITVTLD--YQLPP-RALPAHQQVHLLQIVREALSNAIK-HAQASEIKVTVSQNDGQ--------------------- 512 (574)
T ss_pred -cCCeEEEe--ccCCC-CCCCHHHHHHHHHHHHHHHHHHHH-hcccCeEEEEEEecCCe---------------------
Confidence 45555554 34452 334444 477899999999999 67788999999887543
Q ss_pred EEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 539 IRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 539 v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+++.|+|||+|||+.. + .+| -.||.|.+.-.+..||... .+|+||.+.+|
T Consensus 513 ~~~~VeDnG~Gi~~~~-----e---------~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~lt 565 (574)
T COG3850 513 VTLTVEDNGVGIDEAA-----E---------PSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLT 565 (574)
T ss_pred EEEEEeeCCcCCCCcc-----C---------CCC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEE
Confidence 9999999999998762 1 123 5789999999999999988 88999999875
No 50
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.63 E-value=4.7e-15 Score=164.68 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=110.2
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHH---HHHHHHhhcccC------------CCCcEE
Q 007463 443 FRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQV---ILHMVGSLLNCN------------SRRGTV 507 (603)
Q Consensus 443 ~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qv---l~NLl~NAik~~------------~~~g~i 507 (603)
+++..+++..-..++..+...|.++++.+... .+..|+..+.++ |.||+.||++|. +++|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 45677777777777777777777777777654 378899999999 679999999985 456889
Q ss_pred EEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc---------------------ccccccccccc
Q 007463 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS---------------------TSVAQLGIRRI 566 (603)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~---------------------~~if~~f~~~~ 566 (603)
++++...++ .+.|+|+|+|.||+++.+ ..+|+|++++.
T Consensus 420 ~l~a~~~~~---------------------~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~ 478 (670)
T PRK10547 420 ILSAEHQGG---------------------NICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTA 478 (670)
T ss_pred EEEEEEcCC---------------------EEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccc
Confidence 998876644 388999999999998654 35899966543
Q ss_pred c--CCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 567 V--NEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 567 ~--~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
. +..+|.|+||++||++++.|||+|+ .+|+||+|+++
T Consensus 479 ~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~ 520 (670)
T PRK10547 479 EQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRIL 520 (670)
T ss_pred cccccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEE
Confidence 2 3357999999999999999999999 68999999974
No 51
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.44 E-value=1.1e-10 Score=115.73 Aligned_cols=237 Identities=11% Similarity=0.119 Sum_probs=167.2
Q ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 007463 316 NQELEIVKVVADQV------LVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSIL 389 (603)
Q Consensus 316 ~~~~~ll~~~a~q~------a~al~~a~l~ee~~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~ 389 (603)
.+..+++-.++.|. ++||++ +-+-.+++..|+.+ |+++.+ +-....+..|.+....+-+|+..-+++|.
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqr--lrelnqrL~~EL~~-~raLae--qListEEsiRk~vARELHDeIGQnITAIr 322 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQR--LRELNQRLQKELAR-NRALAE--QLISTEESIRKDVARELHDEIGQNITAIR 322 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hHHHHH--HHHhhHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34455555555554 455555 22222333333333 233322 22233356788888999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEE
Q 007463 390 GLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSI 469 (603)
Q Consensus 390 g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~ 469 (603)
.-+.+.++...++..++....|.+-+.++..-+..++.--|. ...+...+.+.++++++.++ ..++|+..++
T Consensus 323 ~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP------~~LDdL~l~qai~~l~~Em~--~~ergihcq~ 394 (497)
T COG3851 323 TQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRP------RQLDDLTLEQAIRSLLREME--LEERGIHCQL 394 (497)
T ss_pred HHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCC------cccccccHHHHHHHHHHHhh--hhhcCeEEEe
Confidence 999999886666767778888888888888888888765542 23456678888888888776 5668887777
Q ss_pred EECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCC
Q 007463 470 EVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVG 549 (603)
Q Consensus 470 ~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~G 549 (603)
+...+-...-..-+.-+.++...+++|-+| ..+.+.|+|.....++ .+.++|+|||.|
T Consensus 395 ~~~~n~~~ldet~rvTLyRl~QE~LNNI~K-HA~AS~V~i~l~~~~e---------------------~l~Lei~DdG~G 452 (497)
T COG3851 395 DWRINETALDETQRVTLYRLCQELLNNICK-HADASAVTIQLWQQDE---------------------RLMLEIEDDGSG 452 (497)
T ss_pred ccccCcccCCcceeEeHHHHHHHHHHHHHh-ccccceEEEEEeeCCc---------------------EEEEEEecCCcC
Confidence 654331101112223488999999999999 6788899999877643 388999999999
Q ss_pred CCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec-cCCcceEEEEC
Q 007463 550 SQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF-PAYVFTCFRVT 603 (603)
Q Consensus 550 i~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~-~~g~Gt~f~it 603 (603)
+|++. +-.|.||.-.+.-|.+.||+.. +...||++.|+
T Consensus 453 l~~~~----------------~v~G~Gl~GmrERVsaLGG~ltlssq~GTrviVn 491 (497)
T COG3851 453 LPPGS----------------GVQGFGLTGMRERVSALGGTLTLSSQHGTRVIVN 491 (497)
T ss_pred CCCCC----------------CccCcCcchHHHHHHHhCCceEEEeccCcEEEEe
Confidence 88762 2468899999999999999999 77789998874
No 52
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.42 E-value=8.2e-14 Score=159.21 Aligned_cols=227 Identities=23% Similarity=0.233 Sum_probs=182.2
Q ss_pred HHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHH
Q 007463 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEA 452 (603)
Q Consensus 373 ~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~ 452 (603)
+.+.++||+|+|+.. |....+.+...+.+++.+.......+.....+++++++.++.+.|..++.-.+|++..+++.+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred hcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhh
Confidence 999999999999998 555555566778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccc--cccc----
Q 007463 453 ACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRND--KKWA---- 526 (603)
Q Consensus 453 ~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~--~~~~---- 526 (603)
.+.+...+..++..+....+.+.|..+.+|+.++.|++.|+++||+| ....|.+..++.........++ .+|.
T Consensus 302 ~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik-~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~ 380 (786)
T KOG0519|consen 302 ISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIK-FTHAGHLEESVIAREELSESNDVLLRAKEEAH 380 (786)
T ss_pred hhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceec-ccccceEEEEEEeehhcchhhHHHHhhhhhhh
Confidence 99999999999999999999888999999999999999999999999 5667777777765432211100 0111
Q ss_pred --cc-------------c----ccCCCC--ceEEEEEEEEcCCCCCcccccc-ccccccc---cccCCCCCCCchHHHHH
Q 007463 527 --TW-------------R----QSSVDG--DVHIRFEILLNEVGSQPEVSTS-VAQLGIR---RIVNEGIEDRMSFSVCK 581 (603)
Q Consensus 527 --~~-------------~----~~~~~~--~~~v~i~V~D~G~Gi~~e~~~~-if~~f~~---~~~~~~~G~GLGL~i~k 581 (603)
.+ + .+.+.. -..-.+.+.|+|.||+.+.... +|.+|.. ..++..+|+|+|+.+|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~ 460 (786)
T KOG0519|consen 381 MAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVF 460 (786)
T ss_pred hccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhc
Confidence 00 0 000000 1123467899999999988777 7877644 44455689999999999
Q ss_pred HHHHHhCCeec---cCCcceEEEE
Q 007463 582 KLVQVRISIKF---PAYVFTCFRV 602 (603)
Q Consensus 582 ~iv~~~gG~I~---~~g~Gt~f~i 602 (603)
.+++.++|.+. ....|++|++
T Consensus 461 ~l~~l~~~~~~~~~~~~~~~t~~~ 484 (786)
T KOG0519|consen 461 SLVELMSGEISDISCISLGKTFSF 484 (786)
T ss_pred cHHHHHHHHhhhhhhhccCceeeE
Confidence 99999999998 5666888876
No 53
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.38 E-value=7.1e-11 Score=134.74 Aligned_cols=191 Identities=14% Similarity=0.209 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEE--EecCCCCCCCC
Q 007463 155 LGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTH--QLNGRNYSDMC 232 (603)
Q Consensus 155 l~~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~--~~~~~~~~~~~ 232 (603)
.+++.+.++++.+..+.+.++++.+.+..|+++++..+++.+.+.+++++|+|+++|++...+.+.. ..+........
T Consensus 170 ~~~~~~~L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~ 249 (686)
T PRK15429 170 NNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQ 249 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhccccc
Confidence 3333343444555588899999999999999999999999999999999999999998887776543 33222222223
Q ss_pred CceecCChhHHHHHhcCCeEEeCCCchhhhcc----CCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecC
Q 007463 233 SSIPITDQDVVRIKGSDGVNILGPDSELAAAS----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPN 308 (603)
Q Consensus 233 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~ 308 (603)
..++...+.+++++.++++.++++........ .......+..+++++||...++. +|++.+.+
T Consensus 250 ~~~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v-------------~GvL~l~~ 316 (686)
T PRK15429 250 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTM-------------LGVLKLAQ 316 (686)
T ss_pred ccCCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEE-------------EEEEEEee
Confidence 34555567789999999999885432211111 00111235688899998855554 77887766
Q ss_pred CCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 309 EQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQ 358 (603)
Q Consensus 309 ~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~ 358 (603)
.....|+++|++++..+|+|+|+|++++..+++.++..+++++.+..+.+
T Consensus 317 ~~~~~F~~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~~lt~ 366 (686)
T PRK15429 317 CEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTE 366 (686)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHH
Confidence 66789999999999999999999999999999998888887766554443
No 54
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.33 E-value=3.1e-12 Score=100.57 Aligned_cols=66 Identities=27% Similarity=0.556 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhc-cCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhCcCCCC
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQD-VNLNSDQ-RMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~lld~sr~e~g 434 (603)
++++|++.+||||||||++|.++++++.+ ...++++ +++++.|.++++++.++++++++++|.++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 36889999999999999999999999998 7788887 999999999999999999999999999876
No 55
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.33 E-value=3.2e-12 Score=137.44 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=80.3
Q ss_pred EEecHHHHHHHHHHHHHhhcccCCCCc---EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc
Q 007463 479 VMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (603)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~~~g---~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (603)
...+...|.|++.||++||++|++.+| .|.|.+...+. ++..+.|.|.|||+||+++++
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~------------------~~~~~~I~V~DNG~GIp~e~l 91 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDE------------------GKDHYRVTVEDNGPGIPPEEI 91 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccC------------------CCcEEEEEEEcCCCCCCHHHH
Confidence 445678899999999999999876655 57777654311 122488999999999999999
Q ss_pred ccccccccccc-----cCCCCCCCchHHHHHHHHHHhCCe-ec---cCCcce-EEEE
Q 007463 556 TSVAQLGIRRI-----VNEGIEDRMSFSVCKKLVQVRISI-KF---PAYVFT-CFRV 602 (603)
Q Consensus 556 ~~if~~f~~~~-----~~~~~G~GLGL~i~k~iv~~~gG~-I~---~~g~Gt-~f~i 602 (603)
+++|++|+.+. ....+++|+||++|+.+++.|+|. ++ .+++|+ .|++
T Consensus 92 ~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~ 148 (535)
T PRK04184 92 PKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYF 148 (535)
T ss_pred HHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEE
Confidence 99999975421 112367999999999999999997 44 556665 5544
No 56
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.31 E-value=1.3e-11 Score=105.58 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=85.2
Q ss_pred ecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccc
Q 007463 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQ 560 (603)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~ 560 (603)
+|+..+.+++.|+++||+++...++.+.|++...++ .+.+.|.|+|.|++++..++.|.
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~---------------------~~~i~i~d~g~g~~~~~~~~~~~ 59 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD---------------------HLEITVEDNGPGIPPEDLEKIFE 59 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC---------------------EEEEEEEeCCCCCCHHHHHHHhc
Confidence 478899999999999999987777888888876543 38899999999999999999998
Q ss_pred ccccccc--CCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 561 LGIRRIV--NEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 561 ~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+++.... ....+.|+||++|+.+++.|+|+++ .++.|++|+|.
T Consensus 60 ~~~~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~ 107 (111)
T smart00387 60 PFFRTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTIT 107 (111)
T ss_pred CeEECCCCCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEE
Confidence 8765331 2245789999999999999999988 44779998873
No 57
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.30 E-value=1e-09 Score=106.85 Aligned_cols=189 Identities=10% Similarity=0.058 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHH
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~l 448 (603)
.+..++.-+.|.+||-|+.|.+++.+-.+...++ .++.+.........|.. +.+.|--+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~-~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLAL-IHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHH-HHHHHhcC---------CcceEcHHHH
Confidence 4566888999999999999999988765544443 44444444444444443 33443322 1236788888
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEECCCCCceEEec-HHHHHHHHHHHHHhhcccCC---CCcEEEEEEEeecCCCCccccc
Q 007463 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGD-ERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKK 524 (603)
Q Consensus 449 i~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D-~~~l~qvl~NLl~NAik~~~---~~g~i~i~v~~~~~~~~~~~~~ 524 (603)
++.+...+.+....+++.+..+.++++ .+..| ..-|--++..|+.||+||.. ++|.|.|+++..++..
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~------ 158 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG------ 158 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC------
Confidence 888888887765445667777665532 23333 33488899999999999953 4799999998875420
Q ss_pred cccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHH-HHhCCeec-cCCcceEEEE
Q 007463 525 WATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLV-QVRISIKF-PAYVFTCFRV 602 (603)
Q Consensus 525 ~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv-~~~gG~I~-~~g~Gt~f~i 602 (603)
...+.|.|+|.|+|.+. + + ...|+|+.+++.+| +..||.+. ....||+|+|
T Consensus 159 -------------~~~l~v~deg~G~~~~~-----~-~--------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~Gt~~~i 211 (221)
T COG3920 159 -------------RFLLTVWDEGGGPPVEA-----P-L--------SRGGFGLQLVERLVPEQLGGELEDERPDGTEFRL 211 (221)
T ss_pred -------------eEEEEEEECCCCCCCCC-----C-C--------CCCCcHHHHHHHHHHHHcCCeEEEEcCCCEEEEE
Confidence 36689999999987652 1 0 25699999999999 89999999 4445999987
Q ss_pred C
Q 007463 603 T 603 (603)
Q Consensus 603 t 603 (603)
+
T Consensus 212 ~ 212 (221)
T COG3920 212 R 212 (221)
T ss_pred E
Confidence 4
No 58
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.27 E-value=2.5e-10 Score=127.84 Aligned_cols=138 Identities=13% Similarity=0.118 Sum_probs=109.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHH---HHHHHHhhcccC------------CCCcE
Q 007463 442 SFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQV---ILHMVGSLLNCN------------SRRGT 506 (603)
Q Consensus 442 ~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qv---l~NLl~NAik~~------------~~~g~ 506 (603)
.+.+..++...-..++..+.+-|-++++.+... ....|..-++++ |.||+.||+.|. ++.|.
T Consensus 389 MvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~---~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARKLGKQVELVIEGE---DTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHHhCCeeEEEEecC---CeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcce
Confidence 456777777777777777777666677766654 478899988887 899999999873 34688
Q ss_pred EEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc------------------------cccccccc
Q 007463 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV------------------------STSVAQLG 562 (603)
Q Consensus 507 i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~------------------------~~~if~~f 562 (603)
|++++...++. +.|+|+|+|.||+.+. ..-||.|.
T Consensus 466 I~L~A~~~gn~---------------------ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PG 524 (716)
T COG0643 466 ITLSAYHEGNN---------------------IVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPG 524 (716)
T ss_pred EEEEEEcCCCe---------------------EEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCC
Confidence 99999887654 9999999999985433 34468886
Q ss_pred ccccc--CCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 563 IRRIV--NEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 563 ~~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+++.. +.-+|-|.||=+||+-++.+||+|. .+|+||+|++.
T Consensus 525 FSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~ 570 (716)
T COG0643 525 FSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIR 570 (716)
T ss_pred CCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEe
Confidence 55332 4568999999999999999999999 89999999984
No 59
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.26 E-value=1.8e-07 Score=96.76 Aligned_cols=308 Identities=17% Similarity=0.129 Sum_probs=176.9
Q ss_pred HHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhccCCCc
Q 007463 189 LYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGES 268 (603)
Q Consensus 189 l~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (603)
+..+.+.+.+.++++. +..+|.+.-.-.. +.+.+. .-...++..+...++..+++.....-... -..+ .
T Consensus 227 ~~~va~Ii~~~~~~~A--VaiTd~e~ilA~v--g~g~dh---hi~g~~i~s~~t~~ai~~g~vv~~~~~e~-~~cs---h 295 (557)
T COG3275 227 LMKVAEIIYEELGAGA--VAITDREKLLAFV--GIGDDH---HIPGKPIISSLTRKAIKTGEVVYADGNEV-YECS---H 295 (557)
T ss_pred HHHHHHHHHHHhCCCe--EEecCHHHHHHhh--cccccc---cCCCCeeccHHHHHHHhhCCEEEEccchh-hccC---C
Confidence 3455677888888864 4444443211111 111110 11234555666788888888777643333 1111 1
Q ss_pred ccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 269 VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREK 348 (603)
Q Consensus 269 ~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~ 348 (603)
.+....+++..|+... +-.+|.+.+....++.++.-..++.+-++..+..-++..+
T Consensus 296 ~~c~l~s~lViPL~~~-------------g~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQie~ge----------- 351 (557)
T COG3275 296 PTCKLGSALVIPLRGK-------------GRVIGTIKLYEAKARLISSINRELAEGIAQLLSAQIEAGE----------- 351 (557)
T ss_pred CCCCcCCceEeecccC-------------CceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHHHHhH-----------
Confidence 2344677899997633 4457888888777888887777766666554443332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 007463 349 LEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD-QRMIVETMMKSSNVLSTLISDVMD 427 (603)
Q Consensus 349 L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~-~~~~l~~i~~~~~~l~~li~~lld 427 (603)
.+++.+.+.+|.-++.+ ...=.|=|=|-|++|+... . .++| .|++ .-+++.+..-.|+
T Consensus 352 ~e~q~~ll~~AEik~Lq--------aQvnPHFLFNaLNTIsa~I---R---~npdkAreL-------il~LS~yfR~NL~ 410 (557)
T COG3275 352 AERQRELLKQAEIKALQ--------AQVNPHFLFNALNTISAVI---R---RNPDKAREL-------ILYLSTYFRYNLE 410 (557)
T ss_pred HHHHHHHHHHHHHHHHH--------hccChHHHHHHHHHHHHHh---c---CChHHHHHH-------HHHHHHHHHHHhc
Confidence 11222223333222211 0112466666677765543 1 2232 2332 3344444444444
Q ss_pred hCcCCCCCccceeeeeeHHHHHHHHHHHHHHH-Hh-hcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccC----
Q 007463 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCL-SI-YRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCN---- 501 (603)
Q Consensus 428 ~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~-~~-~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~---- 501 (603)
-++ .+.++|.+=++.+-..++-. ++ ...+++.+++|+.+- .+...+ -+++=|++||+||.
T Consensus 411 ~~~---------~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~-~~~iP~----filQPLVENAIKHG~~~~ 476 (557)
T COG3275 411 NNT---------QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELR-QVQIPS----FILQPLVENAIKHGISQL 476 (557)
T ss_pred CCc---------ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHh-hccCch----hhhhHHHHHHHHhcccch
Confidence 332 34677877777766655422 22 123566666665543 122222 35667889999974
Q ss_pred CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHH
Q 007463 502 SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCK 581 (603)
Q Consensus 502 ~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k 581 (603)
.+.|.|+|++...+.. +.++|+|||.|++|+ +..|+|+||+.++
T Consensus 477 ~~~g~V~I~V~~~d~~---------------------l~i~VeDng~li~p~---------------~~~g~giGL~nv~ 520 (557)
T COG3275 477 KDTGRVTISVEKEDAD---------------------LRIEVEDNGGLIQPD---------------EEDGTGIGLANVH 520 (557)
T ss_pred hcCCceEEEEEEeCCe---------------------EEEEEecCCCCcCCC---------------CCCCCChHHHHHH
Confidence 3578999999887554 999999999999886 1238999999999
Q ss_pred HHHHHhCC-----eec-cCCcceEEEE
Q 007463 582 KLVQVRIS-----IKF-PAYVFTCFRV 602 (603)
Q Consensus 582 ~iv~~~gG-----~I~-~~g~Gt~f~i 602 (603)
+-++.+=| .+. .+..||++.+
T Consensus 521 ~RLk~lyG~~~gl~i~~~~q~gTri~f 547 (557)
T COG3275 521 KRLKLLYGDDEGLHIESLEQAGTRIIF 547 (557)
T ss_pred HHHHHhcCccccceEEeccCCCcEEEE
Confidence 98887655 455 6667999876
No 60
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.23 E-value=4.3e-11 Score=131.16 Aligned_cols=109 Identities=12% Similarity=0.010 Sum_probs=78.9
Q ss_pred hhcCcEEEEEECCCCCceEEec--HHHHHHHHHHHHHhhcccCCCCc---EEEEEEEeecCCCCccccccccccccCCCC
Q 007463 461 IYRGFGFSIEVDRSLPDHVMGD--ERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDG 535 (603)
Q Consensus 461 ~~~~i~l~~~~~~~lp~~v~~D--~~~l~qvl~NLl~NAik~~~~~g---~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 535 (603)
..+.+.+...+.++.+ .+..| ...|.+++.|||+||++|+.++| .|.|.+...++
T Consensus 21 ~~~~iS~aEfF~kN~~-~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~------------------- 80 (795)
T PRK14868 21 SQREISIAEFFEKNKH-MLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGD------------------- 80 (795)
T ss_pred hccccceeeecccCcc-eeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCC-------------------
Confidence 3466777777777655 44444 67799999999999999887665 57777754322
Q ss_pred ceEEEEEEEEcCCCCCcccccccccccccc-------ccCCCCCCCchHHHHHHHHHHhCCeec
Q 007463 536 DVHIRFEILLNEVGSQPEVSTSVAQLGIRR-------IVNEGIEDRMSFSVCKKLVQVRISIKF 592 (603)
Q Consensus 536 ~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~-------~~~~~~G~GLGL~i~k~iv~~~gG~I~ 592 (603)
++.|.|+|||+||++++++++|++|+++ .+....|.|||+++|...+ .+||.++
T Consensus 81 --~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~ 141 (795)
T PRK14868 81 --YYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAK 141 (795)
T ss_pred --EEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCcEE
Confidence 3889999999999999999999987532 1222346666666666665 3677666
No 61
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.22 E-value=3.7e-09 Score=111.84 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccc
Q 007463 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATW 528 (603)
Q Consensus 449 i~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~ 528 (603)
...+....+......++.+..+..+..+..-..-+.-+.+++...++|++| +.+...+.|++...++.
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~r-Ha~A~~v~V~l~~~~~~----------- 310 (365)
T COG4585 243 VEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIR-HAQATEVRVTLERTDDE----------- 310 (365)
T ss_pred HHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHh-ccCCceEEEEEEEcCCE-----------
Confidence 333333444444455666666554322222345577799999999999999 56678889988877654
Q ss_pred cccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 529 RQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 529 ~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
++++|.|||.|++++. .+.|+||.-.|+-|+..||++. .+|+||+++++
T Consensus 311 ----------l~l~V~DnG~Gf~~~~----------------~~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~ 362 (365)
T COG4585 311 ----------LRLEVIDNGVGFDPDK----------------EGGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTIT 362 (365)
T ss_pred ----------EEEEEEECCcCCCccc----------------cCCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEe
Confidence 9999999999976552 1268999999999999999998 78899999874
No 62
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.20 E-value=7.6e-11 Score=99.21 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhcccCCC-CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccc
Q 007463 486 VFQVILHMVGSLLNCNSR-RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (603)
Q Consensus 486 l~qvl~NLl~NAik~~~~-~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (603)
+.+++.++++||++|... ++.|.|.+...++ .+.|.|.|+|+|++++..++.|.++..
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~---------------------~~~v~i~d~g~g~~~~~~~~~~~~~~~ 59 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGD---------------------HLEIRVEDNGPGIPEEDLERIFERFSD 59 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCC---------------------EEEEEEEeCCCCCCHHHHHHHhhhhhc
Confidence 468999999999998765 6778888766533 388999999999999999988876511
Q ss_pred -cccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 565 -RIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 565 -~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
.......+.|+||++|+++++.|||.++ ..+.|++|+++
T Consensus 60 ~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~ 102 (103)
T cd00075 60 GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTIT 102 (103)
T ss_pred CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEE
Confidence 1222345889999999999999999998 44579998874
No 63
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.20 E-value=1.9e-09 Score=122.69 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcC
Q 007463 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSD 249 (603)
Q Consensus 170 ~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 249 (603)
..++++++.+.++.|++++++.+++.+.+.++++.|.||+.|+++..+......+..........++.+++.++++..++
T Consensus 3 ~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~tg 82 (748)
T PRK11061 3 TRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLA 82 (748)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhccC
Confidence 46889999999999999999999999999999999999999988877666555543222112345677788899999999
Q ss_pred CeEEeCCCchhhhccC-CCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHH
Q 007463 250 GVNILGPDSELAAASS-GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQ 328 (603)
Q Consensus 250 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q 328 (603)
++..+.+....+.... ....+.+.++.+++||...++ .+|+|.+.+..++.|++++.+++..+|+|
T Consensus 83 ~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~~ge-------------VIGVL~v~~~~~~~Fs~~d~~lL~~LA~~ 149 (748)
T PRK11061 83 EPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQ-------------LLGVLVVQQRELRQFDESEESFLVTLATQ 149 (748)
T ss_pred ceEEECCcccCcccccCccccCccceEEEEEEEeeCCE-------------EEEEEEEeeCCCCCCCHHHHHHHHHHHHH
Confidence 9999865443322211 112246788999999885444 38899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007463 329 VLVALSHAAVLEES 342 (603)
Q Consensus 329 ~a~al~~a~l~ee~ 342 (603)
+|++++|+++.+..
T Consensus 150 aAiAL~na~l~~~~ 163 (748)
T PRK11061 150 LAAILSQSQLTALF 163 (748)
T ss_pred HHHHHHHHhhcccc
Confidence 99999999877655
No 64
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.17 E-value=1.5e-10 Score=104.54 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=74.2
Q ss_pred ecHHHHHHHHHHHHHhhcccC---CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccc
Q 007463 481 GDERRVFQVILHMVGSLLNCN---SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS 557 (603)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~---~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~ 557 (603)
.|...+.+++.|+++||++|. ++++.|.|++...++ .+.++|.|+|+|+++ .++
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~---------------------~~~i~I~D~G~gi~~--~~~ 91 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH---------------------EVYITVRDEGIGIEN--LEE 91 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC---------------------EEEEEEEEcCCCcCc--hhH
Confidence 456789999999999999974 336788888876644 288999999999973 667
Q ss_pred ccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 558 VAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 558 if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+|++|+.... ...+.|+||++++++ .++++ .+++||+|+++
T Consensus 92 ~~~~~~~~~~-~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~v~i~ 135 (137)
T TIGR01925 92 AREPLYTSKP-ELERSGMGFTVMENF----MDDVSVDSEKEKGTKIIMK 135 (137)
T ss_pred hhCCCcccCC-CCCCCcccHHHHHHh----CCcEEEEECCCCCeEEEEE
Confidence 8888876433 345899999998874 46777 56889999874
No 65
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.14 E-value=1.1e-10 Score=124.29 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=75.9
Q ss_pred EEecHHHHHHHHHHHHHhhcccCCCCc---EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc
Q 007463 479 VMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (603)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~~~g---~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (603)
..+|...+.+++.||++||++|...+| .|.|.+...++ .++.++|.|||+||+++++
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~--------------------~~~~I~V~DNG~GIp~edl 81 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGK--------------------DHYKVTVEDNGPGIPEEYI 81 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCC--------------------ceEEEEEEECCCCCCHHHH
Confidence 667899999999999999999876555 67776654321 1378999999999999999
Q ss_pred cccccccccccc-----CCCCCCCchHHHHHHHHHHhCCe-ec
Q 007463 556 TSVAQLGIRRIV-----NEGIEDRMSFSVCKKLVQVRISI-KF 592 (603)
Q Consensus 556 ~~if~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~gG~-I~ 592 (603)
+++|++|+++.. ...++.|+||++|+.+.+.|+|+ ++
T Consensus 82 ~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~ 124 (488)
T TIGR01052 82 PKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVK 124 (488)
T ss_pred HhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEE
Confidence 999999765322 12368999999999999999998 55
No 66
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.07 E-value=4.5e-10 Score=123.22 Aligned_cols=104 Identities=11% Similarity=0.048 Sum_probs=79.0
Q ss_pred EEecHHHHH---HHHHHHHHhhcccCCCCc---EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCc
Q 007463 479 VMGDERRVF---QVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQP 552 (603)
Q Consensus 479 v~~D~~~l~---qvl~NLl~NAik~~~~~g---~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~ 552 (603)
+.++...+. +++.||++||++|...++ .|.|.+...++ .++.+.|.|||+|||+
T Consensus 27 ~lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~--------------------~~~~I~V~DNG~GIp~ 86 (659)
T PRK14867 27 MLGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGS--------------------DHYKVAVEDNGPGIPP 86 (659)
T ss_pred eeechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCC--------------------cEEEEEEEeeCeeCCH
Confidence 455555555 999999999999876544 67777754322 2488999999999999
Q ss_pred ccccccccccccccc-----CCCCCCCchHHHHHHHHHHhCCe---ec-cCCcceEEEE
Q 007463 553 EVSTSVAQLGIRRIV-----NEGIEDRMSFSVCKKLVQVRISI---KF-PAYVFTCFRV 602 (603)
Q Consensus 553 e~~~~if~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~gG~---I~-~~g~Gt~f~i 602 (603)
+.+.++|++|+++.. ...++.|+||+++..+.+.++|. +. .++.|++|++
T Consensus 87 e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i 145 (659)
T PRK14867 87 EFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEM 145 (659)
T ss_pred HHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEE
Confidence 999999999765221 33467899999999999987664 43 6778888765
No 67
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.99 E-value=2.4e-08 Score=110.90 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEE-EEecCCCCCCCCCceecCChhHHHHHh
Q 007463 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLT-HQLNGRNYSDMCSSIPITDQDVVRIKG 247 (603)
Q Consensus 169 ~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 247 (603)
+..++++++.++++.|++++++.+++.+.+.+++++|+|++.++++..+... +++.... .....++..++.++++..
T Consensus 4 L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa~g~~~~~--~~~~~~~~~~gi~g~v~~ 81 (534)
T TIGR01817 4 LAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWSEEG--FAPIRYRVGEGAIGQIVA 81 (534)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEEeCCChhh--cccccccCCccHHHHHHh
Confidence 6679999999999999999999999999999999999999998876554332 2222221 122356667788899999
Q ss_pred cCCeEEeCCCchhhhc-cCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCC-CcCCchHHHHHHHHH
Q 007463 248 SDGVNILGPDSELAAA-SSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ-FRTWSNQELEIVKVV 325 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~-~~~~~~~~~~ll~~~ 325 (603)
++++.++.+....... ........+..+.+++||...++. +|++++.+.. .+.|+++++++++.+
T Consensus 82 ~~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~~~g~v-------------iGvL~v~s~~~~~~ft~~d~~lL~~l 148 (534)
T TIGR01817 82 TGNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIKADSET-------------IGVLAADRDFRSRERLEEEVRFLEMV 148 (534)
T ss_pred cCCeEEecccccCchhhhccccccCCcceEEEEEEcCCCEE-------------EEEEEEEeccccccccHHHHHHHHHH
Confidence 9999888654433221 111123466889999998754444 7888887764 566899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007463 326 ADQVLVALSHAAVLE 340 (603)
Q Consensus 326 a~q~a~al~~a~l~e 340 (603)
|+++|++++.++.++
T Consensus 149 A~~ia~aI~~~~~~~ 163 (534)
T TIGR01817 149 ANLIGQTVRLHRLVA 163 (534)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877765
No 68
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.99 E-value=6.9e-08 Score=105.06 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhcccC----CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccc
Q 007463 486 VFQVILHMVGSLLNCN----SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQL 561 (603)
Q Consensus 486 l~qvl~NLl~NAik~~----~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~ 561 (603)
..-++..|++||++|. .++|.|.|.+...++ ++.++|.|||+||+++....+.+.
T Consensus 351 p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~---------------------~i~i~i~Dng~g~~~~~~~~~~~~ 409 (456)
T COG2972 351 PKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDD---------------------VIQISISDNGPGIDEEKLEGLSTK 409 (456)
T ss_pred chHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCC---------------------EEEEEEeeCCCCCChhHHHHHHhh
Confidence 3457788999999874 467788888877633 499999999999998866555433
Q ss_pred ccccccCCCCC-CCchHHHHHHHHHHhCCe----ec-cCCcceEEEE
Q 007463 562 GIRRIVNEGIE-DRMSFSVCKKLVQVRISI----KF-PAYVFTCFRV 602 (603)
Q Consensus 562 f~~~~~~~~~G-~GLGL~i~k~iv~~~gG~----I~-~~g~Gt~f~i 602 (603)
- ++ .|+||.-++++++.|-|. +. .+++||+..+
T Consensus 410 ~--------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~ 448 (456)
T COG2972 410 G--------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQI 448 (456)
T ss_pred c--------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEE
Confidence 2 12 599999999999999998 55 8899999876
No 69
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=98.96 E-value=1.6e-08 Score=89.42 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=96.7
Q ss_pred chhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhc
Q 007463 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAA 263 (603)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (603)
|++++++.+++.+.+.+++++++||+.++++..+...+..++... ....++...+.+..+..++++.........
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 75 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPR--LSESLPEDDPLIGRALETGEPVSVPDIDER--- 75 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GC--GHHCEETTSHHHHHHHHHTS-EEESTCCC----
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCcc--ccccCCCCccHHHHHHhhCCeEEecccccc---
Confidence 678999999999999999999999999999888888877733321 223677778888889998887555331111
Q ss_pred cCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHH
Q 007463 264 SSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSH 335 (603)
Q Consensus 264 ~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~ 335 (603)
...+..+.+++|+...++. +|++++.....+.|+++++++++.+|+++|.+++|
T Consensus 76 -----~~~~~~s~~~vPl~~~~~~-------------~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 76 -----DFLGIRSLLVVPLRSRDRV-------------IGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp -----TTTTTCEEEEEEEEETTEE-------------EEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred -----cCCCCCEEEEEEEeECCEE-------------EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 1145678899999866655 66777777777789999999999999999999976
No 70
>PRK03660 anti-sigma F factor; Provisional
Probab=98.96 E-value=3.4e-09 Score=96.79 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=70.8
Q ss_pred ecHHHHHHHHHHHHHhhcccCC---CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccc
Q 007463 481 GDERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS 557 (603)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~---~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~ 557 (603)
.|...+.+++.|++.||++|.. .++.|.|++...++ .+.++|.|+|+|+++ ..+
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~---------------------~l~i~I~D~G~g~~~--~~~ 91 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEE---------------------ELEITVRDEGKGIED--IEE 91 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCC---------------------EEEEEEEEccCCCCh--HHH
Confidence 3667899999999999998743 23678888765533 388999999999986 456
Q ss_pred ccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 558 VAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 558 if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
.|+++++... ...+.|+||+++++ +.+.++ .+++||+|+++
T Consensus 92 ~~~~~~~~~~-~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~ 135 (146)
T PRK03660 92 AMQPLYTTKP-ELERSGMGFTVMES----FMDEVEVESEPGKGTTVRMK 135 (146)
T ss_pred hhCCCcccCC-CCCCccccHHHHHH----hCCeEEEEecCCCcEEEEEE
Confidence 7788765332 22478999998875 455777 56789999874
No 71
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=98.90 E-value=1e-08 Score=93.70 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=103.3
Q ss_pred chhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhc
Q 007463 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAA 263 (603)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (603)
|++++++.+++.+.+.+++++|++++++++...+...+..............+...+...++..+.++..+.+.......
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 67899999999999999999999999999988877666665444322334556667778999999999997655443321
Q ss_pred cCCC----------------cccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCC-cCCchHHHHHHHHHH
Q 007463 264 SSGE----------------SVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQF-RTWSNQELEIVKVVA 326 (603)
Q Consensus 264 ~~~~----------------~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~-~~~~~~~~~ll~~~a 326 (603)
.... ..+.+..+.+.+|+...++. +|++++....+ +.|+++|+++++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~g~~-------------~G~l~l~~~~~~~~~~~~d~~ll~~~a 147 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVPIISGGRL-------------IGVLSLYRTRPGRPFTEEDLALLESFA 147 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEETTEE-------------EEEEEEEEESSSSS--HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEeeeecccCc-------------EEEEEEEECCCCCCcCHHHHHHHHHHH
Confidence 1110 11568999999998754444 77888887776 999999999999999
Q ss_pred HHHHHHH
Q 007463 327 DQVLVAL 333 (603)
Q Consensus 327 ~q~a~al 333 (603)
+++++||
T Consensus 148 ~~~a~ai 154 (154)
T PF01590_consen 148 QQLAIAI 154 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999986
No 72
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.85 E-value=1.6e-08 Score=93.80 Aligned_cols=96 Identities=9% Similarity=-0.054 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHHhhcccCCC---CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccc
Q 007463 482 DERRVFQVILHMVGSLLNCNSR---RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSV 558 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~---~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~i 558 (603)
|...+..++.+++.||++|..+ ++.|.|++...++ .+.+.|.|+|+|++++.....
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~---------------------~l~i~V~D~G~g~d~~~~~~~ 97 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED---------------------RLEIVVADNGVSFDYETLKSK 97 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC---------------------EEEEEEEECCcCCChHHhccc
Confidence 4566788999999999998643 4678888876643 399999999999999888888
Q ss_pred ccccccccc-CCCCCCCchHHHHHHHHHHhCCeec-cCCcceEEEE
Q 007463 559 AQLGIRRIV-NEGIEDRMSFSVCKKLVQVRISIKF-PAYVFTCFRV 602 (603)
Q Consensus 559 f~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~-~~g~Gt~f~i 602 (603)
|.++++... ....+.|+||++++++++. +. ..++|++|++
T Consensus 98 ~~p~~~~~~~~~~~~~G~GL~li~~l~d~----v~~~~~~G~~v~~ 139 (161)
T PRK04069 98 LGPYDISKPIEDLREGGLGLFLIETLMDD----VTVYKDSGVTVSM 139 (161)
T ss_pred cCCCCCCCcccccCCCceeHHHHHHHHHh----EEEEcCCCcEEEE
Confidence 888764322 2234679999999999986 44 3346888876
No 73
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.84 E-value=3.9e-05 Score=75.98 Aligned_cols=190 Identities=12% Similarity=0.089 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHH
Q 007463 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMI 449 (603)
Q Consensus 370 ~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li 449 (603)
|..+...+-..+..-|-+..-.+++....-.++. ...-..|.+.+++|+.-|+++..+|.--. +--.+...|...+
T Consensus 251 r~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~-~~a~~aieKaa~aL~~Ai~EVRRiSH~LR---P~~LDDLGL~aAL 326 (459)
T COG4564 251 RARLARELHDGISQNLVSVKCALELAARQLNPPK-GGAHPAIEKAADALNGAIKEVRRISHDLR---PRALDDLGLTAAL 326 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC-CCCchhhhhHHHHHHHHHHHHHHhccccC---hhhhhhhhHHHHH
Confidence 3334444545555666677777777764332222 22235678888999999999887765210 0011222334444
Q ss_pred HHHHHHHHHHHhhcCcEEEEEECCCCCce-EEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccc
Q 007463 450 KEAACLARCLSIYRGFGFSIEVDRSLPDH-VMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATW 528 (603)
Q Consensus 450 ~~~~~~~~~~~~~~~i~l~~~~~~~lp~~-v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~ 528 (603)
+..++.++ ...|+.++.+.+.. |.. ...-...+.+|...-++|-=+|+ +..+|+|......+.
T Consensus 327 e~L~~~f~---~~tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~d~----------- 390 (459)
T COG4564 327 EALLEDFK---ERTGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMGDM----------- 390 (459)
T ss_pred HHHHHHhh---hccCeEEEEEecCC-cccCCcHHHHHHHHHHHHHHHHHHhhc-CCeEEEEEeccCCcc-----------
Confidence 44444443 55678877776543 322 22335679999999999998854 677888888766553
Q ss_pred cccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec--cCCcceEEEE
Q 007463 529 RQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF--PAYVFTCFRV 602 (603)
Q Consensus 529 ~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~--~~g~Gt~f~i 602 (603)
+++.|.|||+|++.+... .+-.|+||--.+.-+...||... +..+||..++
T Consensus 391 ----------vql~vrDnG~GF~~~~~~-------------~~~~GiGLRNMrERma~~GG~~~v~s~p~GTel~v 443 (459)
T COG4564 391 ----------VQLMVRDNGVGFSVKEAL-------------QKRHGIGLRNMRERMAHFGGELEVESSPQGTELTV 443 (459)
T ss_pred ----------eEEEEecCCCCccchhhc-------------cCccccccccHHHHHHHhCceEEEEecCCCcEEEE
Confidence 999999999997654311 11269999999999999999988 5556998775
No 74
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.79 E-value=2.7e-07 Score=101.74 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC-hhHHHHHhc
Q 007463 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-QDVVRIKGS 248 (603)
Q Consensus 170 ~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~ 248 (603)
..++++++.|.++.|.+++++.+++.+.+.++++.|.|++++++......++++.... .....+..+ |.+..+..+
T Consensus 4 ~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~~l~~~as~gl~~~~---~~~~~~~geGP~l~av~~~ 80 (509)
T PRK05022 4 DALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDV---LGRRFALEEHPRLEAILRA 80 (509)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCcEEEEEEcCCChHh---hCCccCCCcchHHHHHHhc
Confidence 4688999999999999999999999999999999999998876532333323322221 112445554 456777776
Q ss_pred CCeEEeCCCchhhhcc----CCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHH
Q 007463 249 DGVNILGPDSELAAAS----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKV 324 (603)
Q Consensus 249 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~ 324 (603)
+.+.++..+...+... .....+.|.++.+++||...+. .+|++.+....+..|++++.+++..
T Consensus 81 g~~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL~~~~~-------------~~GvL~l~~~~~~~f~~~~~~~l~~ 147 (509)
T PRK05022 81 GDPVRFPADSELPDPYDGLIPGVQESLPVHDCMGLPLFVDGR-------------LIGALTLDALDPGQFDAFSDEELRA 147 (509)
T ss_pred CCeEEEecCCCCCcccccccccccccCCcceEEEEEEEECCE-------------EEEEEEEeeCCCCcCCHHHHHHHHH
Confidence 7777775444332211 1112345778999999985444 3788888887788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 325 VADQVLVALSHAAVLEESQHMREKLEEQNRAL 356 (603)
Q Consensus 325 ~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L 356 (603)
+|.+++.|+.+++.+++.++..++++...+.+
T Consensus 148 ~a~~~a~Al~~a~~~~~l~~~~~~~~~~~~~~ 179 (509)
T PRK05022 148 LAALAAATLRNALLIEQLESQAELPQDVAEFL 179 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877777666554444
No 75
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.77 E-value=2.5e-07 Score=82.04 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=99.3
Q ss_pred chhhHHHHHHHHHHhhhCCceEEEEeEcCC-CCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhh
Q 007463 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEI-KTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAA 262 (603)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~v~l~~~~-~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (603)
|.+++++.++..+.+.++++++++++.+++ ...+......+... ......++..++...+++.++++..+.+......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTL-PLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPV 79 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCc-ccceEEecCCCChHHHHHHcCCeEEeechhhCCc
Confidence 467889999999999999999999999984 33333332222221 1123345666677788888888877653322221
Q ss_pred ccCCCc-ccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCC-CCcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 263 ASSGES-VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAVLE 340 (603)
Q Consensus 263 ~~~~~~-~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~-~~~~~~~~~~~ll~~~a~q~a~al~~a~l~e 340 (603)
...... ...+..+.+.+|+...++. +|++++... .++.|+.++.++++.++++++.++++.++.+
T Consensus 80 ~~~~~~~~~~~~~s~~~~Pl~~~~~~-------------~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 80 FALDLLGRYQGVRSFLAVPLVADGEL-------------VGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred cccccccceeceeeEEEeeeeecCEE-------------EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1233788999998865444 556666665 6889999999999999999999999998765
Q ss_pred H
Q 007463 341 E 341 (603)
Q Consensus 341 e 341 (603)
+
T Consensus 147 ~ 147 (149)
T smart00065 147 E 147 (149)
T ss_pred h
Confidence 4
No 76
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.73 E-value=3.3e-07 Score=104.87 Aligned_cols=171 Identities=11% Similarity=0.007 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCC-CCCCCCceecCChhHHHHHh
Q 007463 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRN-YSDMCSSIPITDQDVVRIKG 247 (603)
Q Consensus 169 ~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 247 (603)
...|.++|+.+.+..|+++++..+...+.+.+.++++.|.++|+....+.+ +..+... ...........++..+.++.
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 456889999999999999999999999999999999999999987766654 3222211 11111222344555677888
Q ss_pred cCCeEEeCCCchhhh----ccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHH
Q 007463 248 SDGVNILGPDSELAA----ASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVK 323 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~ 323 (603)
++++.+.+....... .... .-++..+++.+||...+.. +|++++.......|+++|.+++.
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~lgvPl~~~~~v-------------~G~l~l~~~~~~~Ft~~d~~ll~ 151 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGG--LYPKFGHYCLMPLAAEGHI-------------FGGCEFIRYDDRPWSEKEFNRLQ 151 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcc--cccCccceEEeceeeCCee-------------EEEEEEEEcCCCCCCHHHHHHHH
Confidence 888887755333221 1111 1234455777888755544 78888887778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 324 VVADQVLVALSHAAVLEESQHMREKLEEQNRA 355 (603)
Q Consensus 324 ~~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~ 355 (603)
.+|.++++|++|++++++.+...+.|+....+
T Consensus 152 ~la~~a~~aie~~~~~e~~~~~~~~L~~~r~~ 183 (686)
T PRK15429 152 TFTQIVSVVTEQIQSRVVNNVDYELLCRERDN 183 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999888777777544443
No 77
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.71 E-value=2.5e-07 Score=83.87 Aligned_cols=137 Identities=17% Similarity=0.202 Sum_probs=88.1
Q ss_pred cchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC--hh-------HHHHHhcCCeEE
Q 007463 183 LDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD--QD-------VVRIKGSDGVNI 253 (603)
Q Consensus 183 ~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~--~~-------~~~~~~~~~~~~ 253 (603)
.|.+++++.+++.+.+.++++.++||+.|+++......+.-............+... +. ...+..++++.+
T Consensus 2 ~~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PF13185_consen 2 EDLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPII 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EE
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEE
Confidence 578999999999999999999999999988763334433333222111111122221 11 112277888888
Q ss_pred eC-CCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHH
Q 007463 254 LG-PDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVA 332 (603)
Q Consensus 254 ~~-~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~a 332 (603)
++ +..... ........+..+.+++||+..++. +|++.+.+..+..|+++++++++.+|++++.|
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~s~l~vPl~~~~~~-------------~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~a 146 (148)
T PF13185_consen 82 INDDDSSFP--PWELARHPGIRSILCVPLRSGGEV-------------IGVLSLYSKEPNAFSEEDLELLEALADQIAIA 146 (148)
T ss_dssp ESCCCGGGS--TTHHHCCTT-SEEEEEEEEETTEE-------------EEEEEEEESSTT---HHHHHHHHHHHHHHHHH
T ss_pred EeCcccccc--chhhhccccCCEEEEEEEeECCEE-------------EEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 77 221111 122334678999999999966655 77888888878899999999999999999999
Q ss_pred HH
Q 007463 333 LS 334 (603)
Q Consensus 333 l~ 334 (603)
|+
T Consensus 147 ie 148 (148)
T PF13185_consen 147 IE 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 78
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.65 E-value=1.3e-07 Score=87.49 Aligned_cols=118 Identities=4% Similarity=-0.102 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCC---CCcEEEEEEEeecCCCCcccc
Q 007463 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDK 523 (603)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~---~~g~i~i~v~~~~~~~~~~~~ 523 (603)
+.+..+...++..+...|+. . .+...+..++.+++.||++|.. +++.|.|++...++.
T Consensus 17 ~~~~~vr~~~~~~a~~~g~~------~-------~~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~------ 77 (159)
T TIGR01924 17 EYVGLIRLTLSGIASRAGYT------Y-------DDIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDR------ 77 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCC------h-------HHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCE------
Confidence 34445555566666655431 1 1234477899999999999853 357888888766442
Q ss_pred ccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc-CCCCCCCchHHHHHHHHHHhCCeec-cCCcceEEE
Q 007463 524 KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQVRISIKF-PAYVFTCFR 601 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~-~~g~Gt~f~ 601 (603)
+.+.|.|+|+|++++.+...|.++..... ....+.|+||+++|++++ ++. ..++|++++
T Consensus 78 ---------------l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~~~~~~G~GL~Li~~L~D----~v~~~~~~G~~l~ 138 (159)
T TIGR01924 78 ---------------LEIIVSDQGDSFDMDTFKQSLGPYDGSEPIDDLREGGLGLFLIETLMD----EVEVYEDSGVTVA 138 (159)
T ss_pred ---------------EEEEEEEcccccCchhhccccCCCCCCCCcccCCCCccCHHHHHHhcc----EEEEEeCCCEEEE
Confidence 88999999999999888877776544222 223467999999999997 344 335577776
Q ss_pred E
Q 007463 602 V 602 (603)
Q Consensus 602 i 602 (603)
+
T Consensus 139 l 139 (159)
T TIGR01924 139 M 139 (159)
T ss_pred E
Confidence 5
No 79
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.65 E-value=1.1e-07 Score=73.12 Aligned_cols=64 Identities=31% Similarity=0.576 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCC
Q 007463 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDS 433 (603)
Q Consensus 370 ~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~ 433 (603)
++++.+.++||+||||++|.++++.+.+...+++.+++++.+.+.++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3568999999999999999999999887566666788999999999999999999999988653
No 80
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.63 E-value=5.2e-06 Score=87.87 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=121.6
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCe
Q 007463 172 VRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGV 251 (603)
Q Consensus 172 l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 251 (603)
|+++-+.+++..++.+-|..++++++..+..+-|.||+.+.++..+++...-+-.....-...+..+++.++.+.++.++
T Consensus 5 Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~aeP 84 (756)
T COG3605 5 LRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAEP 84 (756)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccCC
Confidence 66777788889999999999999999999999999999999886665554433332222334667788999999999998
Q ss_pred EEeCCCchhhhccC-CCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHH
Q 007463 252 NILGPDSELAAASS-GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVL 330 (603)
Q Consensus 252 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a 330 (603)
.-+.+....+.... ..+++-...+.+.+|+++.++. +|||++..+..|.|+++|.+++.++|.|+|
T Consensus 85 lNLsdAqsHPsF~Y~petgEE~Y~sFLGvPIi~~~r~-------------lGVLVVQqk~~R~y~E~Eve~L~T~A~~lA 151 (756)
T COG3605 85 LNLADAQSHPSFKYLPETGEERYHSFLGVPIIRRGRL-------------LGVLVVQQRELRQYDEDEVEFLVTLAMQLA 151 (756)
T ss_pred CChhhhhhCCccccccccchHHHHHhhccceeecCce-------------eEEEEEecccccccchHHHHHHHHHHHHHH
Confidence 88866655444322 2334455677888888755544 889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007463 331 VALSHAAVL 339 (603)
Q Consensus 331 ~al~~a~l~ 339 (603)
..+.++++.
T Consensus 152 ~iva~~el~ 160 (756)
T COG3605 152 EIVAQSQLT 160 (756)
T ss_pred HHHHhhhhh
Confidence 999988765
No 81
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.38 E-value=2.6e-06 Score=85.81 Aligned_cols=175 Identities=10% Similarity=0.036 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhCcCCCCCcc----ceeeeeeHHHHHHHHHHHHHHHHhhc---CcEEEEEECCCCC
Q 007463 405 RMIVETMMKSSNVLSTLISD-VMDNSPKDSGRFP----LEIRSFRLHAMIKEAACLARCLSIYR---GFGFSIEVDRSLP 476 (603)
Q Consensus 405 ~~~l~~i~~~~~~l~~li~~-lld~sr~e~g~~~----l~~~~~~l~~li~~~~~~~~~~~~~~---~i~l~~~~~~~lp 476 (603)
+.+|+....+=-.+.-+++. ++-++ ...+.-+ .-...+++.++|+++.+..+..|..+ --.+.++....+.
T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~-~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~ 252 (414)
T KOG0787|consen 174 QYFLDRFYMSRISIRMLVNQHLLLFA-SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALS 252 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheec-CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCccccc
Confidence 55677655543334445554 33333 1111111 11245789999999999998777653 2234444333333
Q ss_pred ceEEecHHHHHHHHHHHHHhhcccC----CCCcE----EEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCC
Q 007463 477 DHVMGDERRVFQVILHMVGSLLNCN----SRRGT----VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEV 548 (603)
Q Consensus 477 ~~v~~D~~~l~qvl~NLl~NAik~~----~~~g~----i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~ 548 (603)
.. ..=|..|..++..|+.||.+++ ...+. |.|.+...++. +.|.|+|.|-
T Consensus 253 ~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD---------------------l~ikISDrGG 310 (414)
T KOG0787|consen 253 FT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED---------------------LLIKISDRGG 310 (414)
T ss_pred Cc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc---------------------eEEEEecCCC
Confidence 22 2347789999999999999753 23333 77777655433 7788999999
Q ss_pred CCCccccccccccccccc---------cCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEE
Q 007463 549 GSQPEVSTSVAQLGIRRI---------VNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRV 602 (603)
Q Consensus 549 Gi~~e~~~~if~~f~~~~---------~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~i 602 (603)
||+.++++++|.-.+.+. ...-.|.|.||.|||.-.+-.||++. -.|-||-..|
T Consensus 311 GV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI 376 (414)
T KOG0787|consen 311 GVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYI 376 (414)
T ss_pred CcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEE
Confidence 999999999987543311 12236999999999999999999998 5677886654
No 82
>PF14501 HATPase_c_5: GHKL domain
Probab=98.35 E-value=2.2e-06 Score=72.78 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHHhhcccCCC---CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccc
Q 007463 482 DERRVFQVILHMVGSLLNCNSR---RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSV 558 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~---~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~i 558 (603)
|+..+-.+|.||++||+++... ...|.|.+...++ .+.|.|++.-.+ + .+.+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~---------------------~~~i~i~N~~~~---~-~~~~ 56 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENG---------------------FLVIIIENSCEK---E-IEKL 56 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC---------------------EEEEEEEECCCC---c-cccc
Confidence 5667889999999999997543 5678888877654 388889888554 1 1222
Q ss_pred cccccccccCCCCCCCchHHHHHHHHHHhCCeec
Q 007463 559 AQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF 592 (603)
Q Consensus 559 f~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~ 592 (603)
+ ....+..+.|+||..++++++.++|++.
T Consensus 57 ~-----~~~~~~~~~G~GL~~v~~i~~~y~g~~~ 85 (100)
T PF14501_consen 57 E-----SSSSKKKGHGIGLKNVKKILEKYNGSLS 85 (100)
T ss_pred c-----ccccCCCCCCcCHHHHHHHHHHCCCEEE
Confidence 2 1123456899999999999999999988
No 83
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.29 E-value=2.9e-05 Score=81.64 Aligned_cols=178 Identities=18% Similarity=0.143 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhc
Q 007463 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGS 248 (603)
Q Consensus 169 ~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 248 (603)
.+.+++++..+.+..+.++.+..+.+.+.+++|++.++++.++.+......+..+...............++.+.+++.+
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 45688889999889999999999999999999999999999988763333333333332211123445567889999999
Q ss_pred CCeEEe-CCCchhhhccCCCc---ccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHH
Q 007463 249 DGVNIL-GPDSELAAASSGES---VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKV 324 (603)
Q Consensus 249 ~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~ 324 (603)
+.+.++ ..++....+..+.. ...+..+.+.+|+...++. +|+|.+....+..|+.+-.+.++.
T Consensus 113 ~~p~~~~~~d~~~~~~~~~l~~~~~~~~~~a~i~~PL~~~~~~-------------~G~Ltld~~~~~~f~~~~~~~lr~ 179 (550)
T COG3604 113 GRPLVFHPADSLFPDPYDGLLPDTEGNKKHACIGVPLKSGDKL-------------IGALTLDHTEPDQFDEDLDEELRF 179 (550)
T ss_pred CCcEEEecCCcccCCcccccccCccCCcceeEEeeeeeeCCee-------------eeeEEeeeecccccchhHHHHHHH
Confidence 999888 55555554433222 2234689999998865555 668888777777888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 325 VADQVLVALSHAAVLEESQHMREKLEEQNRALQQA 359 (603)
Q Consensus 325 ~a~q~a~al~~a~l~ee~~~~~~~L~~~~~~L~~a 359 (603)
++..++.+..++.+.++.+..++++++.+.+++..
T Consensus 180 La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~~~ 214 (550)
T COG3604 180 LAALAALAVANALLHRELSSLKERLEEENLALEEQ 214 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999998888777666543
No 84
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.28 E-value=4.6e-06 Score=73.82 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCC---cEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccc
Q 007463 483 ERRVFQVILHMVGSLLNCNSRR---GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVA 559 (603)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~~~~---g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if 559 (603)
...+.-++..++.||++|...+ +.|.|++...++. +.++|.|+|+|+++.......
T Consensus 29 ~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~---------------------l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 29 RDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDR---------------------LRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCE---------------------EEEEEEECCCCCChhhccCcc
Confidence 4578889999999999986543 5777777666543 999999999998877544332
Q ss_pred ccccccccCCCCCCCchHHHHHHHHHHhCCeeccCCcceEEEEC
Q 007463 560 QLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKFPAYVFTCFRVT 603 (603)
Q Consensus 560 ~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~~~g~Gt~f~it 603 (603)
..-. ......|+||.+++++++... + +.++|++++++
T Consensus 88 ~~~~----~~~~~~G~Gl~li~~l~D~~~--~-~~~~gn~v~l~ 124 (125)
T PF13581_consen 88 PWEP----DSLREGGRGLFLIRSLMDEVD--Y-REDGGNTVTLR 124 (125)
T ss_pred cccC----CCCCCCCcCHHHHHHHHcEEE--E-ECCCeEEEEEE
Confidence 2111 233477999999999998763 3 46778888764
No 85
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.26 E-value=4.7e-06 Score=63.35 Aligned_cols=62 Identities=29% Similarity=0.493 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 007463 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSP 430 (603)
Q Consensus 369 ~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~lld~sr 430 (603)
.+.++.+.++||+|||++++.++++.+.+... .++..++++.+.+.++++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678999999999999999999999886433 556678999999999999999999998864
No 86
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=97.97 E-value=1.2e-05 Score=73.63 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCC-eeEEE-E-Eec--CCCCCCCCCceecCChhHHH
Q 007463 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKT-EMNLT-H-QLN--GRNYSDMCSSIPITDQDVVR 244 (603)
Q Consensus 170 ~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~-~l~~~-~-~~~--~~~~~~~~~~i~~~~~~~~~ 244 (603)
..+.++++.+..+.+.+++++.+++.+.+.++++++.+|..+++.. ..... + ... ...........+........
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T COG2203 4 ALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIGI 83 (175)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhhh
Confidence 4567788889999999999999999999999999999999887742 10000 0 000 00000000000111112233
Q ss_pred HHhcCCeEEeCCCchhhhccCCCcccCC--ceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCc-CCchHHHHH
Q 007463 245 IKGSDGVNILGPDSELAAASSGESVESG--PVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFR-TWSNQELEI 321 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~-~~~~~~~~l 321 (603)
....+....+.+................ ..+.+.+|+...++. +|++++...... .|+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~vPl~~~~~~-------------~G~l~~~~~~~~~~~~~~e~~l 150 (175)
T COG2203 84 ALREGRPVVVEDILQDPRFRDNPLVLLEPPIRSYLGVPLIAQGEL-------------LGLLCVHDSEPRRQWSEEELEL 150 (175)
T ss_pred hhcCCceEEeeccccCcccccCHHHHHHHHHHHheeeeeeECCEe-------------eEEeeeeccCCCCCCCHHHHHH
Confidence 4445555555333222221111111111 577889998865544 667777776655 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007463 322 VKVVADQVLVALSHAAVLEE 341 (603)
Q Consensus 322 l~~~a~q~a~al~~a~l~ee 341 (603)
++.++++++.++++++++++
T Consensus 151 l~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 151 LEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776
No 87
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.80 E-value=4.2e-05 Score=78.99 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccc
Q 007463 484 RRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGI 563 (603)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~ 563 (603)
..+.+++.||+.||+++.. ..|.|.+... + ...|+|.|+|+||++++++++|++|+
T Consensus 21 ~~~~~~l~eLi~Na~dA~a--~~I~i~~~~~--~--------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ 76 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA--TRIDVEIEEG--G--------------------LKLIEVSDNGSGIDKEDLPLACERHA 76 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC--CEEEEEEEeC--C--------------------EEEEEEEecCCCCCHHHHHHHhhCCC
Confidence 4477999999999999643 5677776432 1 25699999999999999999999987
Q ss_pred ccc
Q 007463 564 RRI 566 (603)
Q Consensus 564 ~~~ 566 (603)
+.+
T Consensus 77 tsk 79 (312)
T TIGR00585 77 TSK 79 (312)
T ss_pred cCC
Confidence 643
No 88
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.78 E-value=5.2e-05 Score=78.42 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCCc---EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccc
Q 007463 483 ERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVA 559 (603)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~~~~g---~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if 559 (603)
..-|.|++..|++|+++++...| .|.|++...+ ..++++.|.|||||||++.+.++|
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~--------------------~d~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG--------------------KDHYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC--------------------CceEEEEEecCCCCCChhHhHHHH
Confidence 45699999999999999776655 4666666553 235899999999999999999999
Q ss_pred cccc-c-cc--c-CCCCCCCchHHHHHHHHHHhCCe
Q 007463 560 QLGI-R-RI--V-NEGIEDRMSFSVCKKLVQVRISI 590 (603)
Q Consensus 560 ~~f~-~-~~--~-~~~~G~GLGL~i~k~iv~~~gG~ 590 (603)
-++. . .+ . ...+-.|+|.+-|=-..+++-|+
T Consensus 94 Gk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGk 129 (538)
T COG1389 94 GKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGK 129 (538)
T ss_pred HHHhccchhhhhhhccccccccHHHHHHHHHhcCCC
Confidence 7631 1 11 1 12245799999999999999997
No 89
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.76 E-value=0.0016 Score=74.72 Aligned_cols=148 Identities=10% Similarity=0.053 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCC-CCCCCceecCChhHHHHHhc-
Q 007463 171 HVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY-SDMCSSIPITDQDVVRIKGS- 248 (603)
Q Consensus 171 ~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~- 248 (603)
.+..+++.+....+.+++.+.+.+.+.+..+.+.++|+.++++...+......+.... ......+....| ......+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~p-~~~a~~~~ 367 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGADGDVLDLAAAGP-AAAALQSV 367 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcccccccccccccCc-hHHHHHhc
Confidence 3566777888889999999999999999999999999998887666544332222111 000111112222 2344444
Q ss_pred -CCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHH
Q 007463 249 -DGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVAD 327 (603)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~ 327 (603)
+....+...+...... .....+++++|+...++. +|+|.+....++.|+++++++++.+|.
T Consensus 368 ~~~~~~~~~~~~~~~~~-----~~~~~s~~~vPL~~~g~~-------------~GvL~v~~~~~~~f~~~e~~ll~~la~ 429 (665)
T PRK13558 368 VAETEAVESTDVDGVSG-----TVDGSAVAAVPLVYRETT-------------YGVLVVYTAEPDEIDDRERVVLEALGR 429 (665)
T ss_pred cCceEEecCCCcccccc-----ccCCceEEEEeEEECCEE-------------EEEEEEeeCCCCCCCHHHHHHHHHHHH
Confidence 4444443221111110 111128899999866665 567777778889999999999999999
Q ss_pred HHHHHHHHHH
Q 007463 328 QVLVALSHAA 337 (603)
Q Consensus 328 q~a~al~~a~ 337 (603)
+++.+|.+.+
T Consensus 430 ~ia~aI~~~~ 439 (665)
T PRK13558 430 AVGAAINALE 439 (665)
T ss_pred HHHHHHHHHH
Confidence 9999996654
No 90
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.19 E-value=0.0011 Score=60.15 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=56.8
Q ss_pred ecHHHHHHHHHHHHHhhcccCCC----CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccc
Q 007463 481 GDERRVFQVILHMVGSLLNCNSR----RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVST 556 (603)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~~----~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~ 556 (603)
-|-.++.-++..++.||++|..+ .|.|.|.+...++. +.+.|.|.|+|+.+ .+
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~---------------------~~i~i~D~G~~~~~--~~ 92 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGK---------------------LEIRIWDQGPGIED--LE 92 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCe---------------------EEEEEEeCCCCCCC--HH
Confidence 46677888888888888887433 58899999887654 99999999988643 23
Q ss_pred cccccccccccCCCCCCCchHHHHHHHHHH
Q 007463 557 SVAQLGIRRIVNEGIEDRMSFSVCKKLVQV 586 (603)
Q Consensus 557 ~if~~f~~~~~~~~~G~GLGL~i~k~iv~~ 586 (603)
..+.+.+.... ....-|+||.+.++++..
T Consensus 93 ~~~~~~~~~~~-~~~~~G~Gl~l~~~~~D~ 121 (146)
T COG2172 93 ESLGPGDTTAE-GLQEGGLGLFLAKRLMDE 121 (146)
T ss_pred HhcCCCCCCCc-ccccccccHHHHhhhhee
Confidence 33444322111 122449999999998754
No 91
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.86 E-value=0.002 Score=72.69 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccc
Q 007463 484 RRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGI 563 (603)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~ 563 (603)
.+...|+.+||+||+++. ...|.|.+... + ...|+|.|||.||++++++..|.++.
T Consensus 21 ~~~~svvkElveNsiDAg--at~I~v~i~~~-g---------------------~~~i~V~DnG~Gi~~~~~~~~~~~~~ 76 (617)
T PRK00095 21 ERPASVVKELVENALDAG--ATRIDIEIEEG-G---------------------LKLIRVRDNGCGISKEDLALALARHA 76 (617)
T ss_pred cCHHHHHHHHHHHHHhCC--CCEEEEEEEeC-C---------------------eEEEEEEEcCCCCCHHHHHHHhhccC
Confidence 346789999999999943 66788877432 2 26799999999999999999988764
Q ss_pred c
Q 007463 564 R 564 (603)
Q Consensus 564 ~ 564 (603)
.
T Consensus 77 t 77 (617)
T PRK00095 77 T 77 (617)
T ss_pred C
Confidence 3
No 92
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=96.75 E-value=0.13 Score=48.16 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=93.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeE------c-CCCCeeEEEEEecCCCCC
Q 007463 157 REVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMP------N-EIKTEMNLTHQLNGRNYS 229 (603)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~------~-~~~~~l~~~~~~~~~~~~ 229 (603)
+++..+.+..+-++.+-.-+..|-+..++++....++.++...++.+...++.. + .+...+.+....+.-..
T Consensus 9 rdi~~Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~~- 87 (174)
T PF11849_consen 9 RDIRTIERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFES- 87 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccchh-
Confidence 455556666677778888888999999999999999999999999998887771 1 11122333333322110
Q ss_pred CCCCce-ecCChh----HHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEE
Q 007463 230 DMCSSI-PITDQD----VVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVL 304 (603)
Q Consensus 230 ~~~~~i-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl 304 (603)
..+..+ ...++. +.+++.+++...- +....+++|-.. ..-+++
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~a~~~~~~~~~-----------------~~~~~ly~~~~~---------------g~~~~i 135 (174)
T PF11849_consen 88 LIGQPLDDLLPPEIRAALQQALSSKRSIFE-----------------EDHFVLYFPSSS---------------GRESLI 135 (174)
T ss_pred hcCCcccccCCHHHHHHHHHHHHcCCeEec-----------------CCeEEEEEecCC---------------CCEEEE
Confidence 011111 112222 3344444433221 122334444210 112344
Q ss_pred EecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 305 VLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQ 343 (603)
Q Consensus 305 ~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~ 343 (603)
++.. .+++++.+.++++.++..++++++|..++++++
T Consensus 136 yl~~--~~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~ 172 (174)
T PF11849_consen 136 YLEG--DRPLSETDRQLLEVFCNNVSIAFDNVSLNEELE 172 (174)
T ss_pred EEeC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 378999999999999999999999999998854
No 93
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=96.55 E-value=0.13 Score=46.36 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=83.6
Q ss_pred HHHHHHHHhhhC-CceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhh-hccCCC
Q 007463 190 YTTLVELSNTLG-LQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELA-AASSGE 267 (603)
Q Consensus 190 ~~~~~~l~~~l~-~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 267 (603)
..+..-+.+.++ .+.+.+|+.+++ ++.+..-.+. ..-.+||.+.+..+...++++..++.+....+ .-++
T Consensus 38 an~sall~~~l~~~nW~GFYl~~~~--~LvLgPFqG~----~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~ghiaC-- 109 (163)
T COG1956 38 ANASALLKERLPDVNWVGFYLLEGD--ELVLGPFQGK----VACVRIPFGKGVCGTAAATGETVRVDDVHAFPGHIAC-- 109 (163)
T ss_pred HHHHHHHHhhccCCceEEEEEecCC--eEEEecccCC----cceEEeccCcchhHHHHhcCCeEEecccccCCCcccc--
Confidence 333344444444 677889998844 4444332222 12357899999999999999998885544322 2222
Q ss_pred cccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHH
Q 007463 268 SVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVA 332 (603)
Q Consensus 268 ~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~a 332 (603)
.....+.|++|++..++. +|++=+.+..+..|+++|...|+.+++.++-.
T Consensus 110 --D~as~SEIVvPi~~~g~~-------------iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~~ 159 (163)
T COG1956 110 --DAASNSEIVVPIFKDGKL-------------IGVLDIDSPTPGRFDEEDEAGLEKLAALLEKS 159 (163)
T ss_pred --ccccCceEEEEEEECCEE-------------EEEEecCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 345788899999865555 88998989999999999999999998877543
No 94
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=96.32 E-value=0.0099 Score=50.64 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=54.5
Q ss_pred HHHHHHhhHhHHHHHHHhcCCC--CchHHHHHHHHHHHHHhhHHHhHHhh-----------cCcchH--HHHHHHHHHHH
Q 007463 54 LIAVAYFSIPVELLYFISCSNV--PFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSF--QLMLSLTVFKI 118 (603)
Q Consensus 54 ~ia~a~~~i~~~l~~~~~~~~~--~~~~~~~l~~~~i~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~ 118 (603)
+-+++.+.+.+.+.++++..+. ++..++|++++++++..+|..+++++ |.+|++ ....+.+..+.
T Consensus 3 ~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~Vll~a~~~G~~~gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (105)
T PF13493_consen 3 IETIVLFLLATALSLLLRPFDPFASNIPMIYLLAVLLIALRYGLRPGLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQDW 82 (105)
T ss_dssp -HHHHHHHHHHHHHHHSTTSS-----SSHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHTTS-SS----TT-SS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCccccchhhcChhHH
Confidence 4567777788888888776532 23347889999999888887766655 344443 13347789999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007463 119 LTALVSCATSITLITL 134 (603)
Q Consensus 119 lt~lv~~~~ai~l~~l 134 (603)
++.+++++++++++.+
T Consensus 83 ~~~~~~l~va~v~g~l 98 (105)
T PF13493_consen 83 ITFAVFLVVALVTGYL 98 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999999
No 95
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.33 Score=43.86 Aligned_cols=179 Identities=10% Similarity=0.010 Sum_probs=105.2
Q ss_pred HHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHH
Q 007463 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEA 452 (603)
Q Consensus 373 ~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~ 452 (603)
+.+.+.||+=.|..+|..-+++|.+...++ +.++.|+.++...+. .|.|+|+.-|..----..+|-.+.=
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~add---DAm~LIrsSArnas~----rLqFaR~AFGAsgSag~~iDtgeae--- 87 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADD---DAMDLIRSSARNASV----RLQFARLAFGASGSAGASIDTGEAE--- 87 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccH---HHHHHHHHHhhhHHH----HHHHHHHHhcccccccccccchhHH---
Confidence 667899999999999999999998766554 355667777666553 5677776544322222344443332
Q ss_pred HHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccC
Q 007463 453 ACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSS 532 (603)
Q Consensus 453 ~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~ 532 (603)
+..+..+....-+++-+.+.. .....+ ...+.||+-=|.-+-|.||.+.+++......
T Consensus 88 -k~A~~~~a~ekpe~~W~g~r~-----~~~Kn~-vkllLNl~lia~~aiPrGG~~~vtle~~e~d--------------- 145 (214)
T COG5385 88 -KAAQDFFANEKPELTWNGPRA-----ILPKNR-VKLLLNLFLIAYGAIPRGGSLVVTLENPETD--------------- 145 (214)
T ss_pred -HHHHHHHhccCCcccccCChh-----hcCcch-HHHHHHHHHHHcccCCCCCeeEEEeecCCcC---------------
Confidence 233333333323444433322 222232 2467888888887789999999888654322
Q ss_pred CCCceEEEEEEEEcCCC--CCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec
Q 007463 533 VDGDVHIRFEILLNEVG--SQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF 592 (603)
Q Consensus 533 ~~~~~~v~i~V~D~G~G--i~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~ 592 (603)
-+|+|.-.|+- .||+.++-.-.. .......+.-.-=+..--+++.-|++|.
T Consensus 146 ------~rfsi~akG~m~Rvppk~lel~~G~---~~eE~vdahsVQpyYt~lLa~eAgm~I~ 198 (214)
T COG5385 146 ------ARFSIIAKGRMMRVPPKFLELHSGE---PPEEAVDAHSVQPYYTLLLAEEAGMTIS 198 (214)
T ss_pred ------ceEEEEecCccccCCHHHHhhhcCC---CccccCCCccccHHHHHHHHHHcCCeEE
Confidence 45777777764 366544332110 0000111223334556678899999998
No 96
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=96.23 E-value=0.023 Score=55.79 Aligned_cols=163 Identities=11% Similarity=0.075 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEe
Q 007463 148 LKKKAWDLGREVGII----MKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQL 223 (603)
Q Consensus 148 l~~~~~~l~~~~~~~----~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~ 223 (603)
+|.++.+|+++...+ ++.+.....+..++.++-++.+.+++.+.+...+.+.|+++.+.+++.++...... ..
T Consensus 52 LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~---~~ 128 (225)
T PF04340_consen 52 LRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGP---SL 128 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SE---E-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeecccccccc---ch
Confidence 445556666666644 44455566688888899999999999999999999999999999999876532100 00
Q ss_pred cCCCCCCCCCceecCChhHHHH----HhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcc
Q 007463 224 NGRNYSDMCSSIPITDQDVVRI----KGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACY 299 (603)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~ 299 (603)
. ............+ +..+++........... .-.+.......|...+|+. .+.
T Consensus 129 ~--------~~~~~~~~~~~~~~~~~l~~~~p~~G~~~~~~~~-~lF~~~~~~v~S~AlipL~-~~~------------- 185 (225)
T PF04340_consen 129 T--------DHVWLSRDAFAQVFIDLLGLQQPYCGRLSEEEAA-LLFGDEAAQVGSVALIPLG-SGR------------- 185 (225)
T ss_dssp -------------E-HHHHHHHHCCCHTT---CCCS--HHHHH-HHHHHCHCC-SEEEEEEEE-SSS-------------
T ss_pred h--------hcccccHHHHHHHHHHHhCCCCceeCCCCcchhH-HhcCCCCccccchheeecc-CCC-------------
Confidence 0 0011111111111 12222222221111111 0001122446777888876 222
Q ss_pred eeeEEEecCCCCcCCchH-HHHHHHHHHHHHHHHHHHH
Q 007463 300 AILVLVLPNEQFRTWSNQ-ELEIVKVVADQVLVALSHA 336 (603)
Q Consensus 300 ~i~vl~l~~~~~~~~~~~-~~~ll~~~a~q~a~al~~a 336 (603)
.+|+|++.+..+..|+++ .-.+|+.+++-++.++.+.
T Consensus 186 ~~G~LalGS~D~~rF~p~mgT~fL~~La~vv~~~L~r~ 223 (225)
T PF04340_consen 186 PIGLLALGSRDPDRFQPDMGTDFLEQLAEVVSAALERW 223 (225)
T ss_dssp EEEEEEEEESSTTCCCSTTTTHHHHHHHHHHHHHGGG-
T ss_pred ceEEEEecCCChhhCCCCccHHHHHHHHHHHHHHHhcc
Confidence 378888888888888764 5789999999998887653
No 97
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=95.99 E-value=0.29 Score=46.08 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCc
Q 007463 386 HSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGF 465 (603)
Q Consensus 386 ~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i 465 (603)
.+|...+++|.++.. ++.++.++-|.+++......++ |.|+--|.-.- -+.++..++-+ .++..++...+
T Consensus 2 GAI~NGLELL~~~~~-~~~~~~~~LI~~Sa~~A~aRl~----F~RlAFGaag~-~~~i~~~e~~~----~~~~~~~~~r~ 71 (182)
T PF10090_consen 2 GAINNGLELLDDEGD-PEMRPAMELIRESARNASARLR----FFRLAFGAAGS-GQQIDLGEARS----VLRGYFAGGRI 71 (182)
T ss_pred cchhhhHHHHcCCCC-ccchHHHHHHHHHHHHHHHHHH----HHHHHcCCCCC-CCCCCHHHHHH----HHHHHHhCCce
Confidence 467788898886544 2334478888888887776544 44443332221 24566655443 33444444445
Q ss_pred EEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEE
Q 007463 466 GFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILL 545 (603)
Q Consensus 466 ~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D 545 (603)
++.-.++.+. . +...-+++.|++-=+..+.|.||.|+|.+....+. ..+.|.=
T Consensus 72 ~l~W~~~~~~-----~-~k~~vklllnl~l~a~~alprGG~i~V~~~~~~~~---------------------~~~~v~a 124 (182)
T PF10090_consen 72 TLDWQVERDL-----L-PKPEVKLLLNLLLCAEDALPRGGEITVSIEGSEGD---------------------GGWRVRA 124 (182)
T ss_pred EEEccCcccc-----C-CHHHHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC---------------------ceEEEEE
Confidence 5555544431 1 23344899999999999899999999997665443 4577777
Q ss_pred cCCCC--CccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec-cCCcceEEEE
Q 007463 546 NEVGS--QPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF-PAYVFTCFRV 602 (603)
Q Consensus 546 ~G~Gi--~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~-~~g~Gt~f~i 602 (603)
+|+.+ +++..+-+-..- ..........=.+....+++..|++|. ..+ ++.++|
T Consensus 125 ~G~~~~~~~~~~~~L~g~~---~~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~-~~~i~l 180 (182)
T PF10090_consen 125 EGPRARLDPDLWAALAGED---PEEDLDPRNVQFYLLPLLAREAGRRLSVEAT-EDAIVL 180 (182)
T ss_pred eccccCCCHHHHHHhcCCC---CCCCCCHHhHHHHHHHHHHHHcCCeEEEEec-CCEEEE
Confidence 77764 444333222110 001112334557889999999999999 333 444444
No 98
>PRK10963 hypothetical protein; Provisional
Probab=95.46 E-value=0.84 Score=44.60 Aligned_cols=162 Identities=9% Similarity=0.065 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEE
Q 007463 147 MLKKKAWDLGREVGII----MKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQ 222 (603)
Q Consensus 147 ~l~~~~~~l~~~~~~~----~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~ 222 (603)
.+|.++.+|+.+...+ ++.+.....+..+..++-.+.|.+++..++. .+.+.|+++.+++++.++...
T Consensus 48 ~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~~~~------- 119 (223)
T PRK10963 48 RQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPDRWR------- 119 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEeccccc-------
Confidence 3455566666666644 4444445668888888889999999999985 789999999999998765311
Q ss_pred ecCCCCCCCCCceecCChhHHHH----HhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhc
Q 007463 223 LNGRNYSDMCSSIPITDQDVVRI----KGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSAC 298 (603)
Q Consensus 223 ~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~ 298 (603)
...... . .......+..... ....++.+..........-.+ ......|...+|+...+
T Consensus 120 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~y~G~~~~~e~~~lf~--~~~~v~S~AllpL~~~~------------- 181 (223)
T PRK10963 120 LGAPSD--F-THLALSRQAFEPLRIQRLGQRQHYLGPLNGPELLLLLP--EAKAVGSVAMSLLGSDG------------- 181 (223)
T ss_pred ccCccc--h-hhhhccHHHHHHHHHHHhcCCCceeCCCChHHHHHhCC--CCCcCceeEEEeccCCC-------------
Confidence 000000 0 0000111111111 233334333221111111111 12235677788874211
Q ss_pred ceeeEEEecCCCCcCCch-HHHHHHHHHHHHHHHHHHH
Q 007463 299 YAILVLVLPNEQFRTWSN-QELEIVKVVADQVLVALSH 335 (603)
Q Consensus 299 ~~i~vl~l~~~~~~~~~~-~~~~ll~~~a~q~a~al~~ 335 (603)
.+|++++.+..+..|++ ....+|+.+++-+...+.+
T Consensus 182 -~~GlLalGS~D~~rF~~~mgT~fL~~la~vvs~~L~~ 218 (223)
T PRK10963 182 -DLGVLLFSSRDAQHYQQGQGTQLLQHLALMLPELLER 218 (223)
T ss_pred -ceEEEEEeCCChhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 16788888888888866 4678889888888877654
No 99
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.37 E-value=0.0042 Score=55.89 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccc
Q 007463 487 FQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGI 563 (603)
Q Consensus 487 ~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~ 563 (603)
.+++..||.||+.+.. ..|.|.+...+... -.|.|.|||.||+++.+..+|....
T Consensus 4 ~~al~ElI~Ns~DA~a--~~I~I~i~~~~~~~--------------------~~i~I~DnG~Gm~~~~l~~~~~~g~ 58 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA--TNIKISIDEDKKGE--------------------RYIVIEDNGEGMSREDLESFFRIGR 58 (137)
T ss_dssp THHHHHHHHHHHHHHH--HHEEEEEEEETTTT--------------------TEEEEEESSS---HHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHccC--CEEEEEEEcCCCCC--------------------cEEEEEECCcCCCHHHHHHhccccC
Confidence 4788999999998543 33777776653110 4589999999999999999776543
No 100
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.09 E-value=0.027 Score=63.62 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHhhcccCCCC--cEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccc--
Q 007463 482 DERRVFQVILHMVGSLLNCNSRR--GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS-- 557 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~~--g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~-- 557 (603)
+...+.+++..+|+||++....| ..|.|.+... -.|+|.|||+|||.+....
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d------------------------g~I~V~DnGrGIP~~~~~~~~ 89 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD------------------------GSVSVRDNGRGIPVGIHPEEG 89 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC------------------------CcEEEEEcCCCCCcccccccC
Confidence 56779999999999999864444 4566655432 1389999999999988777
Q ss_pred ------ccccccc--c-----ccCCCCCCCchHHHHHHHH
Q 007463 558 ------VAQLGIR--R-----IVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 558 ------if~~f~~--~-----~~~~~~G~GLGL~i~k~iv 584 (603)
+|..... . +....+=.|.|++.+..+-
T Consensus 90 ~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS 129 (631)
T PRK05559 90 KSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALS 129 (631)
T ss_pred CcchheeeeeccccCccCCccccccCcccccchhhhhhhe
Confidence 6655221 1 1111223689999888773
No 101
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=94.85 E-value=0.046 Score=61.79 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHHhhcccCCC--CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccc--
Q 007463 482 DERRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS-- 557 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~--~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~-- 557 (603)
|+.-+.+++..||+||++-... ...|.|.+... + .|+|.|||.|||.+....
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~-g-----------------------~I~V~DnG~GIp~~~h~~~k 89 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINED-G-----------------------SITVTDNGRGIPVDIHPKTG 89 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCC-C-----------------------cEEEEEeCccccCCccCCCC
Confidence 4567899999999999983322 34677766532 1 389999999999874332
Q ss_pred ------ccccccc-------cccCCCCCCCchHHHHHHHHH
Q 007463 558 ------VAQLGIR-------RIVNEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 558 ------if~~f~~-------~~~~~~~G~GLGL~i~k~iv~ 585 (603)
+|..... .+....+=.|.|++.+..+-+
T Consensus 90 i~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 90 KPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred CCchHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 3322111 000112336889988877766
No 102
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.035 Score=62.66 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccc
Q 007463 487 FQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (603)
Q Consensus 487 ~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (603)
.-|+..|++||+++. ...|.|.+ ++++ .-.|.|.|||.||+++++.-.+.++.+
T Consensus 25 aSVVKELVENSlDAG--At~I~I~v--e~gG--------------------~~~I~V~DNG~Gi~~~Dl~la~~rHaT 78 (638)
T COG0323 25 ASVVKELVENSLDAG--ATRIDIEV--EGGG--------------------LKLIRVRDNGSGIDKEDLPLALLRHAT 78 (638)
T ss_pred HHHHHHHHhcccccC--CCEEEEEE--ccCC--------------------ccEEEEEECCCCCCHHHHHHHHhhhcc
Confidence 358899999999942 24555555 4333 134999999999999998888776543
No 103
>PRK14083 HSP90 family protein; Provisional
Probab=94.11 E-value=0.035 Score=62.04 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=48.6
Q ss_pred EEecHHHHHHHHHHHHHhhcccCCC--------CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCC
Q 007463 479 VMGDERRVFQVILHMVGSLLNCNSR--------RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGS 550 (603)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~~--------~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi 550 (603)
++.|+. ..+.+|+.||.++... .+.|.|.+. ..+. -.+.|+|||+||
T Consensus 20 LYs~~~---iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~---------------------~~l~I~DnGiGm 74 (601)
T PRK14083 20 LYSSPR---VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGG---------------------GTLIVEDNGIGL 74 (601)
T ss_pred hcCCcH---HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCC---------------------cEEEEEeCCCCC
Confidence 455553 4688999999886322 245666653 2111 458999999999
Q ss_pred Cccccccccccc----cccc------cCCCCCCCchHHHHHH
Q 007463 551 QPEVSTSVAQLG----IRRI------VNEGIEDRMSFSVCKK 582 (603)
Q Consensus 551 ~~e~~~~if~~f----~~~~------~~~~~G~GLGL~i~k~ 582 (603)
+.+++.+.+-.. .+.. ....+..|+|++-|-.
T Consensus 75 t~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~ 116 (601)
T PRK14083 75 TEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL 116 (601)
T ss_pred CHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE
Confidence 999988775321 1111 1123567888764433
No 104
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=93.75 E-value=0.11 Score=59.05 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHHhhcccCCC--CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccc--
Q 007463 482 DERRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS-- 557 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~--~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~-- 557 (603)
|+.-+.+++..||+||++-... ...|.|.+.. ++ .|+|.|||.|||.+....
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~--~g----------------------~I~V~DnG~GIp~~~h~~~k 82 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIND--DG----------------------SVTVEDNGRGIPVDIHPEEG 82 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEeC--CC----------------------cEEEEEeCCCcCccccCcCC
Confidence 4566899999999999983322 3567666653 21 289999999999864321
Q ss_pred ------cccc------ccc-cccCCCCCCCchHHHHHHHHH
Q 007463 558 ------VAQL------GIR-RIVNEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 558 ------if~~------f~~-~~~~~~~G~GLGL~i~k~iv~ 585 (603)
+|.. |.. .+....+-.|.||+.+..+-+
T Consensus 83 i~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 83 ISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred CCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcC
Confidence 2322 111 011122336889988877765
No 105
>PRK05218 heat shock protein 90; Provisional
Probab=92.60 E-value=0.088 Score=59.35 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCCccccccccc
Q 007463 540 RFEILLNEVGSQPEVSTSVAQ 560 (603)
Q Consensus 540 ~i~V~D~G~Gi~~e~~~~if~ 560 (603)
.|.|.|||.||+.+++...+.
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~ 94 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLG 94 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 389999999999999887663
No 106
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=92.15 E-value=0.13 Score=57.98 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=52.1
Q ss_pred EecHHHHHHHHHHHHHhhcccCC--CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc---
Q 007463 480 MGDERRVFQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV--- 554 (603)
Q Consensus 480 ~~D~~~l~qvl~NLl~NAik~~~--~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~--- 554 (603)
+.+.....+++..||+||++-.- ....|.|.+... -.|+|.|||.|||.+.
T Consensus 25 Yigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d------------------------~~I~V~DnGrGIp~~~h~~ 80 (625)
T TIGR01055 25 YTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQD------------------------QSIEVFDNGRGMPVDIHPK 80 (625)
T ss_pred eeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCC------------------------CeEEEEecCCccCcccccc
Confidence 33444568899999999998322 245566666432 2389999999999887
Q ss_pred -----cccccc-c-----ccc-cccCCCCCCCchHHHHHHHHH
Q 007463 555 -----STSVAQ-L-----GIR-RIVNEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 555 -----~~~if~-~-----f~~-~~~~~~~G~GLGL~i~k~iv~ 585 (603)
.+-+|. . |.. .+....+=.|.|++.+..+-+
T Consensus 81 ~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~ 123 (625)
T TIGR01055 81 EGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSK 123 (625)
T ss_pred cCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcC
Confidence 555552 2 111 111122336899999888776
No 107
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=92.05 E-value=0.085 Score=59.84 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc
Q 007463 490 ILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (603)
Q Consensus 490 l~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (603)
+..||+||.++.. .++.+.|++....+. ..+.|.|||+||+.+++
T Consensus 30 lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~---------------------~~L~I~DnGiGMt~edl 88 (701)
T PTZ00272 30 LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN---------------------KTLTVEDNGIGMTKADL 88 (701)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCC---------------------CEEEEEECCCCCCHHHH
Confidence 6778888887521 234566666554322 46899999999999886
Q ss_pred cccc
Q 007463 556 TSVA 559 (603)
Q Consensus 556 ~~if 559 (603)
.+.+
T Consensus 89 ~~~L 92 (701)
T PTZ00272 89 VNNL 92 (701)
T ss_pred HHHh
Confidence 5554
No 108
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=91.60 E-value=2 Score=34.11 Aligned_cols=72 Identities=11% Similarity=0.217 Sum_probs=55.4
Q ss_pred HHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHH
Q 007463 377 MSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLA 456 (603)
Q Consensus 377 ~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~ 456 (603)
+.|.+||-|..|.+++.+-.....+++.++.++.+......+..+-+.|..-. ....+++.+++++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~~~---------~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQSE---------DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCCeecHHHHHHHHHHHH
Confidence 57999999999999998877666677778888888888777776655553321 224789999999988776
Q ss_pred H
Q 007463 457 R 457 (603)
Q Consensus 457 ~ 457 (603)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 5
No 109
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.58 E-value=8.6 Score=36.60 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEe
Q 007463 148 LKKKAWDLGREVGIIMKQKEA----GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQL 223 (603)
Q Consensus 148 l~~~~~~l~~~~~~~~~~~~~----~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~ 223 (603)
++.+..+++.+...+.+...+ -..+..+...+.++.+.+++++++-+..++-|+...+.+-+..+....-.+ .
T Consensus 50 ~R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~~~~~~~~--~- 126 (218)
T COG3159 50 LRNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQDSWVLGAL--A- 126 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEechhhhhhhH--H-
Confidence 344556666666655554443 334778888999999999999999888999999987777665433110000 0
Q ss_pred cCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeE
Q 007463 224 NGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILV 303 (603)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~v 303 (603)
.+-...++.....+..+.+..-.-.-.... -.+........|.-++||-.+. ..|+
T Consensus 127 ---------ls~~a~e~~r~~~~g~~~~ylG~l~~~e~~-ll~~~ea~~vgSvAi~~L~~~~--------------~~gl 182 (218)
T COG3159 127 ---------LSRQAFEQVRIQRLGLRQAYLGPLNGAEPL-LLGLPEAKAVGSVAIVPLGSQA--------------PLGL 182 (218)
T ss_pred ---------hhhhhhHHHHHHhcCCCCcccccCCcchhh-hccCCcccccceeEEEEccCCC--------------CceE
Confidence 000011111222223333222111100000 0011111223444555654211 2567
Q ss_pred EEecCCCCcCCch-HHHHHHHHHHHHHHHHHHH
Q 007463 304 LVLPNEQFRTWSN-QELEIVKVVADQVLVALSH 335 (603)
Q Consensus 304 l~l~~~~~~~~~~-~~~~ll~~~a~q~a~al~~ 335 (603)
+.+.+..++.|.+ ....++..++.-++-++++
T Consensus 183 lafgS~D~~hf~~gmGT~fL~~la~vl~~~L~R 215 (218)
T COG3159 183 LAFGSRDPRHFQPGMGTLFLRHLALVLARLLER 215 (218)
T ss_pred EEecCCCccccCCCcchHHHHHHHHHHHHHHhh
Confidence 7777777888865 4677888888877776653
No 110
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.13 E-value=0.36 Score=42.64 Aligned_cols=82 Identities=5% Similarity=-0.093 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccc------
Q 007463 486 VFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVA------ 559 (603)
Q Consensus 486 l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if------ 559 (603)
+.-+...|++||+|| ..+|+|+|.++..+.. .++.|.+--++-...+++++.
T Consensus 64 vgYl~NELiENAVKf-ra~geIvieasl~s~~---------------------f~~kvsN~vd~~t~~~f~~ll~~it~g 121 (184)
T COG5381 64 VGYLANELIENAVKF-RATGEIVIEASLYSHK---------------------FIFKVSNIVDLPTTIDFENLLKVITEG 121 (184)
T ss_pred HHHHHHHHHHhhhcc-cCCCcEEEEEEeccce---------------------EEEEecccCCCccHHHHHHHHHHHhcC
Confidence 456778899999995 4556899998876543 677777665553333333221
Q ss_pred -------ccccc-cccCCCCCCCchHHHHHHHHHHhCCeec
Q 007463 560 -------QLGIR-RIVNEGIEDRMSFSVCKKLVQVRISIKF 592 (603)
Q Consensus 560 -------~~f~~-~~~~~~~G~GLGL~i~k~iv~~~gG~I~ 592 (603)
++-.. ..++...|+||||- .++.-+|.+..
T Consensus 122 DP~dLlieRiEanA~~~d~~gSglGLL---TlmsDYgA~fa 159 (184)
T COG5381 122 DPLDLLIERIEANALESDCEGSGLGLL---TLMSDYGAQFA 159 (184)
T ss_pred ChHHHHHHHHHhhccCCCCccccccce---ehhhhhcceeE
Confidence 11111 22335568899975 34445555543
No 111
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=90.41 E-value=0.19 Score=56.48 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcccCCC--CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccc--------
Q 007463 487 FQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVST-------- 556 (603)
Q Consensus 487 ~qvl~NLl~NAik~~~~--~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~-------- 556 (603)
.+++..||+||++..-. ...|.|.+...+ .|+|.|||.|||.+..+
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g------------------------~I~V~DnG~GIp~~~h~~~~~~~~e 58 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTIDKDN------------------------SISVEDNGRGIPVEIHPKEKKYAPE 58 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEeCCC------------------------eEEEEEeCCceeCCccCcCCCCcHH
Confidence 45667788999985422 455666664331 38999999999976543
Q ss_pred cccccccc--cc-----cCCCCCCCchHHHHHHH
Q 007463 557 SVAQLGIR--RI-----VNEGIEDRMSFSVCKKL 583 (603)
Q Consensus 557 ~if~~f~~--~~-----~~~~~G~GLGL~i~k~i 583 (603)
-+|..... .. ....+-.|.|++.+..+
T Consensus 59 ~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnal 92 (594)
T smart00433 59 VIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNAL 92 (594)
T ss_pred HhhhhhcccCCCCCCCccccCCcccchHHHHHHh
Confidence 12322111 00 01223368899988877
No 112
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=0.53 Score=51.99 Aligned_cols=82 Identities=6% Similarity=0.007 Sum_probs=46.6
Q ss_pred EEecHHHHHHHHHHHHHhhcccC----------C----CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEE
Q 007463 479 VMGDERRVFQVILHMVGSLLNCN----------S----RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEIL 544 (603)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~----------~----~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~ 544 (603)
++.++.- -|..||+||.++. + ..+.+.|++..+.+. =.++|+
T Consensus 24 lYSnKeI---FLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~---------------------kTLtI~ 79 (623)
T COG0326 24 LYSNKEI---FLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN---------------------KTLTIS 79 (623)
T ss_pred ccCCcHH---HHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC---------------------CEEEEE
Confidence 4555543 3667888887531 1 123466666655432 348999
Q ss_pred EcCCCCCcccccccc----cc----c----cccc--cCCCCCCCchHHHHHHHH
Q 007463 545 LNEVGSQPEVSTSVA----QL----G----IRRI--VNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 545 D~G~Gi~~e~~~~if----~~----f----~~~~--~~~~~G~GLGL~i~k~iv 584 (603)
|||+||..++....- .. | .... +.=.+-.|+|++-|--+.
T Consensus 80 DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 80 DNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred eCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeee
Confidence 999999887753331 11 1 1111 111356799999775443
No 113
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=87.25 E-value=0.6 Score=53.52 Aligned_cols=47 Identities=9% Similarity=0.217 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhcccCCC--CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc
Q 007463 484 RRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (603)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~~--~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (603)
.-|.+++..+++||++-.-. ...|.|.+... + .|+|.|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~d-g-----------------------sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHAD-G-----------------------SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCC-C-----------------------eEEEEEcCCcccCCc
Confidence 45899999999999973333 35677766542 1 389999999999873
No 114
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=85.49 E-value=68 Score=35.95 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEe
Q 007463 164 KQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWM 209 (603)
Q Consensus 164 ~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l 209 (603)
.+.+...+...+.+..+.+.|..+-|-.--..+.+..+++.+++++
T Consensus 322 ~r~~l~~~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~f 367 (750)
T COG4251 322 YRVQLTEHHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCF 367 (750)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEE
Confidence 3333444444566666677787777777778888999999887776
No 115
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.88 E-value=3.4 Score=31.37 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=34.0
Q ss_pred HHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q 007463 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTL 421 (603)
Q Consensus 373 ~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~l 421 (603)
.+....||+.|-|..|.|++++ ...++..+|++.+.+..+..+.+
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~l 59 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESEL 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456679999999999999874 23455678888888888777654
No 116
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=84.72 E-value=0.5 Score=53.02 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=12.8
Q ss_pred EEEEEcCCCCCcccc
Q 007463 541 FEILLNEVGSQPEVS 555 (603)
Q Consensus 541 i~V~D~G~Gi~~e~~ 555 (603)
++|.|||.|||-+..
T Consensus 81 isV~dnGrGIPv~~h 95 (602)
T PHA02569 81 VTVSDNGRGIPQAMV 95 (602)
T ss_pred EEEEECCCcccCCcc
Confidence 899999999987543
No 117
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=83.70 E-value=0.98 Score=51.10 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHhhcccC--CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc----
Q 007463 482 DERRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS---- 555 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~--~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~---- 555 (603)
|+.-|.+++..+|+||++-. .....|.|.+... =.++|.|||.|||-+..
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~d------------------------gsitV~DnGrGIPv~~h~~~~ 86 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKD------------------------NSITVQDDGRGIPTGIHQDGN 86 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEcCC------------------------CeEEEEECCCcccCcccCcCC
Confidence 45567888888888888633 2345666666522 13899999999986532
Q ss_pred ----cccccc------ccc-cccCCCCCCCchHHHHHHHHH
Q 007463 556 ----TSVAQL------GIR-RIVNEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 556 ----~~if~~------f~~-~~~~~~~G~GLGL~i~k~iv~ 585 (603)
+-+|.. |.. .+.-.++-.|.|++.+.-+-+
T Consensus 87 ~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~ 127 (637)
T TIGR01058 87 ISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSS 127 (637)
T ss_pred CccceeEEEEecccCcCCCCcccccCCcccccccccceeec
Confidence 222322 211 111122336888887766544
No 118
>PTZ00130 heat shock protein 90; Provisional
Probab=80.49 E-value=1 Score=51.68 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=15.7
Q ss_pred EEEEEEcCCCCCccccccc
Q 007463 540 RFEILLNEVGSQPEVSTSV 558 (603)
Q Consensus 540 ~i~V~D~G~Gi~~e~~~~i 558 (603)
.++|+|||+||..+++..-
T Consensus 136 tLtI~DnGIGMT~eEl~~n 154 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINN 154 (814)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4799999999999886544
No 119
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=79.29 E-value=2.5 Score=51.56 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCcccc--------ccccccccc--cc-----cCCCCCCCchHHHHHHHHH
Q 007463 541 FEILLNEVGSQPEVS--------TSVAQLGIR--RI-----VNEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 541 i~V~D~G~Gi~~e~~--------~~if~~f~~--~~-----~~~~~G~GLGL~i~k~iv~ 585 (603)
|+|.|||.|||-+.. +-||..... .+ .-.++-.|.|.+.|.-+-+
T Consensus 96 IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~ 155 (1388)
T PTZ00108 96 ISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFST 155 (1388)
T ss_pred EEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccc
Confidence 899999999987543 223432211 11 1112335888888866543
No 120
>PLN03237 DNA topoisomerase 2; Provisional
Probab=78.96 E-value=2.4 Score=51.68 Aligned_cols=76 Identities=7% Similarity=0.086 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhccc---CCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc-------
Q 007463 486 VFQVILHMVGSLLNC---NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS------- 555 (603)
Q Consensus 486 l~qvl~NLl~NAik~---~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~------- 555 (603)
|..++..+|.||++. .+....|.|.+..+++ .|+|.|||.|||-+..
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~g-----------------------sIsV~DnGRGIPV~iH~~eg~~~ 134 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQN-----------------------LISVYNNGDGVPVEIHQEEGVYV 134 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCC-----------------------EEEEEecCccccCCCCCCCCCcc
Confidence 445555555555543 2445677777765433 2899999999987643
Q ss_pred -ccccccccc--c-----ccCCCCCCCchHHHHHHHH
Q 007463 556 -TSVAQLGIR--R-----IVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 556 -~~if~~f~~--~-----~~~~~~G~GLGL~i~k~iv 584 (603)
+-||..... . +.-.++=.|.|.+.|.-+-
T Consensus 135 pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS 171 (1465)
T PLN03237 135 PEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFS 171 (1465)
T ss_pred ceEEEEeeeccccCCCCcceeeccccccCcccccccc
Confidence 223332211 1 1112233688888876554
No 121
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=78.43 E-value=2.4 Score=46.06 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccc
Q 007463 488 QVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (603)
Q Consensus 488 qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (603)
-++-.|++|++++ ....|.|.+. +++ -=.+.|+|||.||..++++-+-++|.+
T Consensus 30 NAlKEliENSLDA--~ST~I~V~vk--~GG--------------------LKLlQisDnG~GI~reDl~ilCeRftT 82 (694)
T KOG1979|consen 30 NALKELIENSLDA--NSTSIDVLVK--DGG--------------------LKLLQISDNGSGIRREDLPILCERFTT 82 (694)
T ss_pred HHHHHHHhccccC--CCceEEEEEe--cCC--------------------eEEEEEecCCCccchhhhHHHHHHhhh
Confidence 4678899999983 4455666554 333 123678999999999999888777654
No 122
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=77.52 E-value=47 Score=34.31 Aligned_cols=93 Identities=15% Similarity=0.243 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 007463 340 EESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLS 419 (603)
Q Consensus 340 ee~~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~ 419 (603)
+|..++.++.++.++.-..-++.+++..+.++.-.++++|.-+. |..+...++-++ ...+++.++.++.+.+...+..
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~-~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCK-KSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHHHH
Confidence 44455555544444444445566666678888999999999886 344443333333 2356677888899998888888
Q ss_pred HHHHHHHhhCcCCCC
Q 007463 420 TLISDVMDNSPKDSG 434 (603)
Q Consensus 420 ~li~~lld~sr~e~g 434 (603)
..+.|+-.+.-..+|
T Consensus 82 ~~l~DmEa~LPkkNG 96 (330)
T PF07851_consen 82 CQLFDMEAFLPKKNG 96 (330)
T ss_pred hhHHHHHhhCCCCCC
Confidence 888877665443344
No 123
>PLN03128 DNA topoisomerase 2; Provisional
Probab=76.05 E-value=4.4 Score=48.82 Aligned_cols=46 Identities=9% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcccC---CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc
Q 007463 486 VFQVILHMVGSLLNCN---SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (603)
Q Consensus 486 l~qvl~NLl~NAik~~---~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (603)
|.+++..+|.||++-. +....|.|.+..+++ .|+|.|||.|||-+.
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg-----------------------sIsV~DnGrGIPv~i 101 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN-----------------------TISVYNNGKGIPVEI 101 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC-----------------------eEEEEecCccccCCC
Confidence 5555556666665532 344667777765332 289999999998754
No 124
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=74.24 E-value=78 Score=32.02 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=38.5
Q ss_pred HHHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHH---HHHH-------hhH-HHhHHhhc-CcchHHHHHHHHHHHHHHH
Q 007463 54 LIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAF---IVLC-------GLT-HLLNGWTY-GPHSFQLMLSLTVFKILTA 121 (603)
Q Consensus 54 ~ia~a~~~i~~~l~~~~~~~~~~~~~~~~l~~~~---i~~~-------~~~-~~~~~~~~-~~~~~~~~~~~~~~~~lt~ 121 (603)
+.++.+|++.+.+..++...+.++..++.+++.+ +.+. |++ .+..++++ .|+...-.+.....-++.+
T Consensus 3 ~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~~v~t~~~~~~~~~~~~~~~l~~~Gg 82 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGMLGVYGPRAATIGFATLLVAVYTMAGPSPGPEALEHALLFLAGG 82 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 4455566666666666554443333222222211 1111 222 22333444 3332222223455555566
Q ss_pred HHHHHHHHHHHHHhhh
Q 007463 122 LVSCATSITLITLIPL 137 (603)
Q Consensus 122 lv~~~~ai~l~~li~~ 137 (603)
+...+.+++..++.|.
T Consensus 83 lwy~~lsl~~~~l~p~ 98 (284)
T PF12805_consen 83 LWYLLLSLLWWPLRPY 98 (284)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6666666777777665
No 125
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=72.67 E-value=4.5 Score=45.00 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccc
Q 007463 487 FQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVA 559 (603)
Q Consensus 487 ~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if 559 (603)
.-++..|++|++++ ....|.|.+...+ .=.|+|.|||.||++.+++-+-
T Consensus 22 ~sAVKELvENSiDA--GAT~I~I~~kdyG----------------------~d~IEV~DNG~GI~~~n~~~l~ 70 (672)
T KOG1978|consen 22 VSAVKELVENSIDA--GATAIDIKVKDYG----------------------SDSIEVSDNGSGISATDFEGLA 70 (672)
T ss_pred HHHHHHHHhcCccc--CCceeeEecCCCC----------------------cceEEEecCCCCCCccchhhhh
Confidence 36889999999983 3345666664332 1348999999999988876653
No 126
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=71.54 E-value=91 Score=29.31 Aligned_cols=124 Identities=10% Similarity=0.083 Sum_probs=73.4
Q ss_pred cchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhh
Q 007463 183 LDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAA 262 (603)
Q Consensus 183 ~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (603)
.+..+..+.+.+.+.+.+++ +|.+-|.+ .+-...+.+.+.. . .. + -.....+++.+++............
T Consensus 52 ~~~~~~A~~~aeII~~~t~~---aVaITDr~--~ILA~~G~g~d~~--~-~~-~-is~~t~~~i~~gk~~~~~~~~~~~i 121 (180)
T TIGR02851 52 GELGDFAKEYAESLYQSLGH---IVLITDRD--TVIAVAGVSKKEY--L-NK-P-ISDELEDTMEERKTVILSDTKDGPI 121 (180)
T ss_pred cchHHHHHHHHHHHHHHhCC---EEEEECCC--cEEEEECCChhhc--C-CC-c-cCHHHHHHHHcCCEEEecCCcccee
Confidence 45566777788888999988 44444443 2322223332221 1 12 3 3445678888888877654321001
Q ss_pred ccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCc--CCchHHHHHHHHHHHHHHH
Q 007463 263 ASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFR--TWSNQELEIVKVVADQVLV 331 (603)
Q Consensus 263 ~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~--~~~~~~~~ll~~~a~q~a~ 331 (603)
... ........+++.+|+...++. +|.+.+. ...+ .+++.+.++.+.+|.-++.
T Consensus 122 ~c~-~~~~~~l~s~ii~Pl~~~g~v-------------iGtLkly-~k~~~~~~~~~e~~la~glA~lLS~ 177 (180)
T TIGR02851 122 EII-DGQEFEYTSQVIAPIIAEGDP-------------IGAVIIF-SKEPGEKLGEVEQKAAETAAAFLGK 177 (180)
T ss_pred ccc-cCCCCCcceEEEEEEEECCeE-------------EEEEEEE-ECCccCCCCHHHHHHHHHHHHHHHH
Confidence 110 011222578899999866655 6666666 4444 8899999999988876654
No 127
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=69.43 E-value=2.3 Score=47.02 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhcccC--CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc------
Q 007463 484 RRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS------ 555 (603)
Q Consensus 484 ~~l~qvl~NLl~NAik~~--~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~------ 555 (603)
.-|.+++..+++||++-. .-...|.|.+..+ + .++|.|||.|||-+..
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d-~-----------------------sisV~DnGRGIPvdiH~~~~~~ 90 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLHED-G-----------------------SISVEDNGRGIPVDIHPKEKVS 90 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEcCC-C-----------------------eEEEEECCCCCccccCCCCCCC
Confidence 556666666666666532 2345677766532 2 2899999999987663
Q ss_pred --cccccc------ccc-cccCCCCCCCchHHHHHHHHH
Q 007463 556 --TSVAQL------GIR-RIVNEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 556 --~~if~~------f~~-~~~~~~~G~GLGL~i~k~iv~ 585 (603)
+-||.. |.. .+.-+++=.|.|.+.|..+-+
T Consensus 91 ~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~ 129 (635)
T COG0187 91 AVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALST 129 (635)
T ss_pred ceEEEEEeeccCcccCCCccEeecCCCccceEEEecccc
Confidence 334433 211 122223346888888877654
No 128
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=69.02 E-value=6.1 Score=44.04 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccc
Q 007463 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGI 563 (603)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~ 563 (603)
-+.|++..|+-|++++ +...|.|.+... ...+.|.|+|.|+..++++.+-++++
T Consensus 21 sla~~VeElv~NSiDA--~At~V~v~V~~~-----------------------t~sv~ViDdG~G~~rdDl~~lg~ry~ 74 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDA--EATCVAVRVNME-----------------------TFSVQVIDDGFGMGRDDLEKLGNRYF 74 (1142)
T ss_pred HHHHHHHHHHhhcccc--CceEEEEEecCc-----------------------eeEEEEEecCCCccHHHHHHHHhhhh
Confidence 3789999999999984 455666666554 27799999999999999988765543
No 129
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=68.32 E-value=78 Score=27.26 Aligned_cols=11 Identities=18% Similarity=0.432 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 007463 152 AWDLGREVGII 162 (603)
Q Consensus 152 ~~~l~~~~~~~ 162 (603)
..+|-||+...
T Consensus 95 i~~L~qeiAl~ 105 (115)
T PF10066_consen 95 IKRLAQEIALL 105 (115)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 130
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=60.64 E-value=1.1e+02 Score=29.97 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHhccchhhHHHHHHHHH
Q 007463 144 REFMLKKKAWDLGREVGIIMKQKEA--GVHVRMLTQEIRKSLDRHTILYTTLVEL 196 (603)
Q Consensus 144 ~e~~l~~~~~~l~~~~~~~~~~~~~--~~~l~~lt~~i~~~~d~~~il~~~~~~l 196 (603)
.+.+-.+.+.++++|+....++... .+|...+++-=-.-.|+|.+-+-.....
T Consensus 162 ~~~L~~~LNnrlE~eV~~i~~~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i~i~ 216 (237)
T PF13748_consen 162 NYRLYRRLNNRLEKEVDIIERRKPASLRRHYRRLSRLRIRLSDREALGYLLIGIV 216 (237)
T ss_pred HHHHHHHHhHHHHHHccHhhcCChHHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Confidence 4555566689999999987766544 5666666652112347777766655443
No 131
>PRK11677 hypothetical protein; Provisional
Probab=58.62 E-value=1e+02 Score=27.42 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc
Q 007463 119 LTALVSCATSITLITLIPLLLKV 141 (603)
Q Consensus 119 lt~lv~~~~ai~l~~li~~~l~~ 141 (603)
+.+++.++++++++.++-++..-
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 34556666667777666555443
No 132
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.05 E-value=1.4e+02 Score=25.50 Aligned_cols=12 Identities=17% Similarity=0.240 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 007463 119 LTALVSCATSIT 130 (603)
Q Consensus 119 lt~lv~~~~ai~ 130 (603)
++.++||..++.
T Consensus 38 Lnl~lS~~Aa~~ 49 (108)
T PF06210_consen 38 LNLVLSLEAAYQ 49 (108)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 133
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=52.61 E-value=2.8e+02 Score=30.55 Aligned_cols=16 Identities=0% Similarity=0.223 Sum_probs=10.0
Q ss_pred CCCcEEEEEEEeecCC
Q 007463 502 SRRGTVLFRVVSENGS 517 (603)
Q Consensus 502 ~~~g~i~i~v~~~~~~ 517 (603)
.+++.+.++++.++.+
T Consensus 437 ~~~~~i~l~V~DnG~G 452 (495)
T PRK11644 437 QQDERLMLVIEDDGSG 452 (495)
T ss_pred EcCCEEEEEEEECCCC
Confidence 3456777877665543
No 134
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=51.74 E-value=3.2 Score=48.08 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhcccCC--CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc
Q 007463 483 ERRVFQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (603)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~~--~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (603)
..-|.+++..+|+||++-.- ....|.|.+... + .++|.|||.|||-+.
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~D-g-----------------------sItV~DnGRGIPvd~ 176 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGECNKITVVLHKD-G-----------------------SVEISDNGRGIPCDV 176 (903)
T ss_pred CCcceEEEEEEeeccchhhccCCCcEEEEEEcCC-C-----------------------eEEEEeCCccccccc
Confidence 34466677777777776332 345566666432 1 289999999998754
No 135
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=51.56 E-value=91 Score=29.20 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=34.3
Q ss_pred CceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007463 272 GPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAV 338 (603)
Q Consensus 272 ~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l 338 (603)
.......+|+.- .+--+|.|++... ...|+.+|+=+.+-.|.-+++-+-++..
T Consensus 106 ~~k~~tivPI~g-------------~GeRLGTLvl~r~-~~~F~ddDLILaEY~ATVVGmEiLr~~~ 158 (177)
T PF06018_consen 106 PNKYTTIVPIYG-------------GGERLGTLVLARF-DKEFTDDDLILAEYGATVVGMEILRSKS 158 (177)
T ss_dssp SSSEEEEEEEEE-------------TTEEEEEEEEEES-S----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEEee-------------CCeEEEEEEEEEc-CCCCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 345567889762 2334666665443 5689999999999999999988866653
No 136
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=50.29 E-value=96 Score=25.00 Aligned_cols=69 Identities=7% Similarity=0.142 Sum_probs=41.8
Q ss_pred HHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHH
Q 007463 377 MSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLA 456 (603)
Q Consensus 377 ~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~ 456 (603)
|.|.+||-|+.|.+.+..-.+...+. .++.+.+.....-|.+- .+++.-. ..+.++|.++++..+..+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~--~~~~~~~~~Rl~ALa~a-~~ll~~~---------~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASV--EEFAEAFSGRLQALARA-HDLLSRS---------DWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCH--HHHHHHHHHHHHHHHHH-HHHHhcC---------CCCCccHHHHHHHHHHhc
Confidence 57999999999999998776544333 23333333333333322 2332211 234789999999877655
Q ss_pred H
Q 007463 457 R 457 (603)
Q Consensus 457 ~ 457 (603)
.
T Consensus 70 ~ 70 (83)
T PF07536_consen 70 G 70 (83)
T ss_pred c
Confidence 4
No 137
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=50.01 E-value=68 Score=24.36 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=11.4
Q ss_pred cccHHHHHHHHHHHHHHHHHH
Q 007463 141 VKVREFMLKKKAWDLGREVGI 161 (603)
Q Consensus 141 ~~~~e~~l~~~~~~l~~~~~~ 161 (603)
++.|...|+..+.++.+|.+.
T Consensus 38 v~qrr~iL~~v~r~~aReaR~ 58 (67)
T COG3114 38 VLQRRAILRGVARQRAREARL 58 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655555555443
No 138
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=47.79 E-value=2.5e+02 Score=29.70 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=27.0
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHH
Q 007463 372 AFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETM 411 (603)
Q Consensus 372 ~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i 411 (603)
.+-..++..+||-.....++++-+.+-+..++..+.+...
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5778889999997777777777776555555544444333
No 139
>PRK04158 transcriptional repressor CodY; Validated
Probab=44.06 E-value=3.4e+02 Score=27.02 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHH
Q 007463 271 SGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAA 337 (603)
Q Consensus 271 ~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~ 337 (603)
.+..-...+|+...+ .-.|.+++.. ...+|+++|+-+++..|.-++..+.+..
T Consensus 107 ~~~~~~tIvPI~ggG-------------eRLGTLvl~r-~~~~f~~dDliL~EyaATVVgLEIlR~~ 159 (256)
T PRK04158 107 FPDKLTTIVPIIGGG-------------ERLGTLILAR-FDKEFTDDDLILAEYAATVVGMEILREK 159 (256)
T ss_pred ccCceEEEEEEecCC-------------eEEEEEEEEe-cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788876333 2345555443 2468999999999999999988875554
No 140
>PRK04654 sec-independent translocase; Provisional
Probab=43.01 E-value=56 Score=31.23 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=5.9
Q ss_pred HHHhhccchhHHHH
Q 007463 376 VMSNGMRRPMHSIL 389 (603)
Q Consensus 376 ~~sHeLRtPL~~I~ 389 (603)
.+.-++|+++.-+.
T Consensus 72 ~~~~~lk~~~~el~ 85 (214)
T PRK04654 72 EAEDQLRNTQQQVE 85 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 141
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.59 E-value=64 Score=24.54 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 007463 153 WDLGREVGI 161 (603)
Q Consensus 153 ~~l~~~~~~ 161 (603)
.+++++++.
T Consensus 51 ~~~~k~l~~ 59 (68)
T PF06305_consen 51 RRLRKELKK 59 (68)
T ss_pred HHHHHHHHH
Confidence 334444333
No 142
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.11 E-value=2.2e+02 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=6.9
Q ss_pred HHHHHHhccchhhHHHHH
Q 007463 175 LTQEIRKSLDRHTILYTT 192 (603)
Q Consensus 175 lt~~i~~~~d~~~il~~~ 192 (603)
|.++|..-.|..+.++..
T Consensus 53 L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 53 LFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHhhCcHHHHHHH
Confidence 334444333333444433
No 143
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=40.86 E-value=83 Score=29.92 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=51.8
Q ss_pred hhHHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHH
Q 007463 240 QDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQEL 319 (603)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~ 319 (603)
+.+.+++++.+...+......+-.....+-..+..+.++-|+-. -|++++....+|.||..|.
T Consensus 122 ~i~~~~~~~~~~~yL~nl~lyPGr~Ef~~lP~ntq~VlvqP~g~-----------------~G~lvlgs~~~R~ft~~D~ 184 (195)
T PF11152_consen 122 PICQRAMESGKLIYLVNLKLYPGRVEFDYLPENTQSVLVQPLGQ-----------------NGVLVLGSNSPRAFTKSDE 184 (195)
T ss_pred HHHHHHHhcCCceeccccccCCCchhhhhcCCCCcEEEEEEcCC-----------------CeEEEEeeCCccccCHHHH
Confidence 44667777777776655444443333345567788889999652 2677788889999999999
Q ss_pred HHHHHHHHH
Q 007463 320 EIVKVVADQ 328 (603)
Q Consensus 320 ~ll~~~a~q 328 (603)
.-++.+|+.
T Consensus 185 ~Wi~~iA~K 193 (195)
T PF11152_consen 185 AWIAGIADK 193 (195)
T ss_pred HHHHHHHHh
Confidence 999998875
No 144
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=37.62 E-value=3.2e+02 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=21.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHhHH
Q 007463 139 LKVKVREFMLKKKAWDLGREVGIIMKQKE 167 (603)
Q Consensus 139 l~~~~~e~~l~~~~~~l~~~~~~~~~~~~ 167 (603)
.....+.-.++.|...|+.|++++++|++
T Consensus 148 ~gs~~~~~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 148 VGSYWRSASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 34444556778888999999999888764
No 145
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=37.62 E-value=2.3e+02 Score=26.93 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHhcCC-CCchHHHHHHHHHHHHHhhHHHhHHhhc---CcchHHHHHHHHHHHHHHHHHHHHHH
Q 007463 66 LLYFISCSN-VPFKWVLIQFIAFIVLCGLTHLLNGWTY---GPHSFQLMLSLTVFKILTALVSCATS 128 (603)
Q Consensus 66 l~~~~~~~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lt~lv~~~~a 128 (603)
.+||+.+++ -..+.+++-++++++.+.+|-++..|-. .|+... ...+..++|.++.++.+
T Consensus 128 ~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s---~~~~~sl~~~i~lwl~s 191 (194)
T PF11833_consen 128 CIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWS---PEQLVSLFTYILLWLVS 191 (194)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCC---HHHHHHHHHHHHHHHHH
Confidence 357887664 3557888888888777766666665552 232222 23444555555555444
No 146
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.94 E-value=2.9e+02 Score=24.26 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhhhhhcc
Q 007463 122 LVSCATSITLITLIPLLLKVK 142 (603)
Q Consensus 122 lv~~~~ai~l~~li~~~l~~~ 142 (603)
++.++++++++.++-++..-.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 445555666665555444444
No 147
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=36.42 E-value=93 Score=24.91 Aligned_cols=29 Identities=3% Similarity=0.111 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhccchhH--HHHHHHHHH
Q 007463 367 SQARNAFQKVMSNGMRRPMH--SILGLLSIM 395 (603)
Q Consensus 367 ~~~~~~~l~~~sHeLRtPL~--~I~g~~~lL 395 (603)
...+.+|...|+.||+||.. .|..+...+
T Consensus 27 ~~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 27 EALVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 34668999999999999975 444444444
No 148
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=33.04 E-value=40 Score=32.53 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=36.7
Q ss_pred eEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 478 HVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 478 ~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
.+.+||-|-.-+-.|.++|+.++..-.|-.-++-... .-+++|.-+|.|||+-
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYK-----------------------Gk~iSvmg~GmGipS~ 70 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYK-----------------------GKKISVMGHGMGIPSI 70 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceec-----------------------CcEEEEEEecCCCccH
Confidence 4568999999999999999999654333322222222 2457888888888763
No 149
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=32.92 E-value=3.8e+02 Score=24.34 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=24.1
Q ss_pred ccCCCCCCChhhhH--HHHhhhhHHHHHHHhhHhHHHHHH
Q 007463 32 CDDDASSWSIESIL--ETQKVSDFLIAVAYFSIPVELLYF 69 (603)
Q Consensus 32 ~~~~~~~~~~~~~~--~~~~~sd~~ia~a~~~i~~~l~~~ 69 (603)
|++....++.+ .. .|....+.+=+...|+|...+.|+
T Consensus 39 c~~~~y~~~~~-~~~~~C~~~~~~f~aa~afaIisi~~~~ 77 (155)
T PF07344_consen 39 CGSVSYSLRVD-DLWFNCPQRRSRFRAAQAFAIISIFVYG 77 (155)
T ss_pred CCCCccccchh-hhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44433455555 34 677777777777777777777765
No 150
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=32.24 E-value=1.1e+02 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=19.0
Q ss_pred CCCCCCCcccccCCCCCCChhhhHHHHhhhhHHHHHHHh
Q 007463 22 DGDNNFPRCNCDDDASSWSIESILETQKVSDFLIAVAYF 60 (603)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ia~a~~ 60 (603)
+.....++|+|+ --++. ++---+..|.+..+...
T Consensus 18 aq~~~gscs~C~----~ls~g-~LaGiV~~D~vlTLLIv 51 (79)
T PF07213_consen 18 AQTQPGSCSGCY----PLSPG-LLAGIVAADAVLTLLIV 51 (79)
T ss_pred hcCCCCCCCCcc----ccCHH-HHHHHHHHHHHHHHHHH
Confidence 334445888898 23344 55555666665555433
No 151
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=31.06 E-value=3.4e+02 Score=23.22 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 007463 153 WDLGREVGIIM 163 (603)
Q Consensus 153 ~~l~~~~~~~~ 163 (603)
+++++..+.+|
T Consensus 109 ~~l~~d~~~lk 119 (121)
T PF07332_consen 109 AELKEDIAALK 119 (121)
T ss_pred HHHHHHHHHhh
Confidence 44454444443
No 152
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=30.74 E-value=2.8e+02 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHhhHHHhHHhh
Q 007463 77 FKWVLIQFIAFIVLCGLTHLLNGWT 101 (603)
Q Consensus 77 ~~~~~~l~~~~i~~~~~~~~~~~~~ 101 (603)
....+.-..+|++.|.+|.++.+..
T Consensus 47 ~~~Fi~Rt~~FIlicAFGYGll~v~ 71 (106)
T PF11872_consen 47 GYHFILRTLAFILICAFGYGLLIVW 71 (106)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456778899998888876654
No 153
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=30.71 E-value=3.6e+02 Score=23.35 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHHHHHHhhHHHhHHhhcCcc
Q 007463 55 IAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPH 105 (603)
Q Consensus 55 ia~a~~~i~~~l~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~ 105 (603)
++-.|+++-..+++...+.. -....+...++++...+++++.+++.-.+|
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~-~~~~al~~l~~~~~~~~lgRlis~~~dG~p 99 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPE-YRRPALRLLALFIGGGGLGRLISLALDGPP 99 (124)
T ss_pred HHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45556666655566544332 123455677788888999999999887433
No 154
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=29.96 E-value=3.7e+02 Score=23.31 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhccchhhHHHHH
Q 007463 171 HVRMLTQEIRKSLDRHTILYTT 192 (603)
Q Consensus 171 ~l~~lt~~i~~~~d~~~il~~~ 192 (603)
...++.+++..-..++.|++.+
T Consensus 82 e~~dlkqeV~dLss~eRIldiA 103 (120)
T COG4839 82 ENDDLKQEVKDLSSPERILDIA 103 (120)
T ss_pred hhhhHHHHHHHhccHHHHHHHH
Confidence 3455566666556667776653
No 155
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.31 E-value=5.2e+02 Score=24.85 Aligned_cols=69 Identities=19% Similarity=0.077 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEc
Q 007463 142 KVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPN 211 (603)
Q Consensus 142 ~~~e~~l~~~~~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~ 211 (603)
..+..+|.+....++++...+.+-+++..++..-.+.+....+...--...++.+...+.- .|++.-..
T Consensus 54 ~~~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~q~~r~~~s~~le~L~~~lP~-~v~ltsL~ 122 (206)
T COG3166 54 QQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRAGWSVLLEQLANLLPE-SVWLTSLK 122 (206)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcccchHHHHHHHHHHhCCC-ceEEeeee
Confidence 3456677777777888887777777776665555555554444444445567778887773 45444333
No 156
>COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]
Probab=28.93 E-value=3.1e+02 Score=28.55 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=51.0
Q ss_pred CceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 272 GPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEE 351 (603)
Q Consensus 272 ~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~ 351 (603)
|.++.+.+|++..++. +||+.+.... .+-....+.+...+-..++++++.|+++--+...++
T Consensus 70 gVkpGINLPi~~~~~v-------------VGViGITGeP-----~~Vr~y~ELVrm~AElliEQ~~~~Eq~qw~~r~rE~ 131 (376)
T COG3835 70 GVKPGINLPIRFDGKV-------------VGVIGITGEP-----EEVRKYGELVRMTAELLIEQARLLEQLQWDRRYREE 131 (376)
T ss_pred CCCCCCCcceEecCce-------------EEEEeccCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566688998866665 5666554321 122233344444445567888888887766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 007463 352 QNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSI 388 (603)
Q Consensus 352 ~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I 388 (603)
.-.++-+.+... ..-.+..+.++=||.-|=-+|
T Consensus 132 f~~~li~~~~~~----~s~~~~Aq~lgiDLs~pR~ai 164 (376)
T COG3835 132 FVSDLIQQKENT----PSLAEWAQRLGIDLSKPRVAI 164 (376)
T ss_pred HHHHHHhccccc----HHHHHHHHHhCcccCCCcEEE
Confidence 555554444322 122233344445555554443
No 157
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.61 E-value=3.2e+02 Score=22.10 Aligned_cols=35 Identities=29% Similarity=0.219 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHH
Q 007463 129 ITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIM 163 (603)
Q Consensus 129 i~l~~li~~~l~~~~~e~~l~~~~~~l~~~~~~~~ 163 (603)
++...+++-+.+++..-.-.+.-..++++++..+.
T Consensus 12 vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~ 46 (90)
T PF06103_consen 12 VLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPIT 46 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333444444443322223333455555555443
No 158
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=28.57 E-value=40 Score=21.43 Aligned_cols=11 Identities=9% Similarity=-0.076 Sum_probs=9.7
Q ss_pred EEEEEEEcCCC
Q 007463 539 IRFEILLNEVG 549 (603)
Q Consensus 539 v~i~V~D~G~G 549 (603)
.+|+|.|+||-
T Consensus 14 ~qITIeD~GPK 24 (30)
T PF07492_consen 14 FQITIEDTGPK 24 (30)
T ss_pred cEEEEecCCCe
Confidence 78999999984
No 159
>TIGR00799 mtp Golgi 4-transmembrane spanning transporter. The proteins of the MET family have 4 TMS regions and are located in late endosomal or lysosomal membranes. Substrates of the mouse MTP transporter include thymidine, both nucleoside and nucleobase analogues, antibiotics, anthracyclines, ionophores and steroid hormones. MET transporters may be involved in the subcellular compartmentation of steroid hormones and other compounds.Drug sensitivity by mouse MET was regulated by compounds that inhibit lysosomal function, interface with intracellular cholesterol transport, or modulate the multidrug resistance phenotype of mammalian cells. Thus, MET family members may compartmentalize diverse hydrophobic molecules, thereby affecting cellular drug sensitivity,nucleoside/nucleobase availability and steroid hormone responses.
Probab=28.01 E-value=5.8e+02 Score=24.93 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCChhhhHHHHhhhhHHHHHHHhhHhHHHHHHH-hcC-CC--CchHHHHHHHHHH----HHHhhHHHh-HHhhc------
Q 007463 38 SWSIESILETQKVSDFLIAVAYFSIPVELLYFI-SCS-NV--PFKWVLIQFIAFI----VLCGLTHLL-NGWTY------ 102 (603)
Q Consensus 38 ~~~~~~~~~~~~~sd~~ia~a~~~i~~~l~~~~-~~~-~~--~~~~~~~l~~~~i----~~~~~~~~~-~~~~~------ 102 (603)
.|+..-+.--+..|.++...+.|.+.+.++.++ .++ .. ||. .++++=|+ ..||.-.-+ +-..+
T Consensus 49 ~~~~~y~~ia~~~ss~~~~~~l~~~slsll~gvI~~r~~~l~pfl--~~Qi~D~~~cll~~~g~yie~pa~l~~~~~~~~ 126 (258)
T TIGR00799 49 AVNMQYLRIADLYSSFLLINALFIISVSLLMGVVKNREKYLYPFL--SLQIMDFLLCLLTLLGSYIELPAYLKLARPRPG 126 (258)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeHHH--HHHHHHHHHHHHHHhhhhhcchhhhhhccccCc
Confidence 444332444577788888888899999999986 444 22 443 44444333 333322221 11111
Q ss_pred -CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007463 103 -GPHSFQLMLSLTVFKILTALVSCATSITLITLIPLL 138 (603)
Q Consensus 103 -~~~~~~~~~~~~~~~~lt~lv~~~~ai~l~~li~~~ 138 (603)
+--||. -..++-+.+++.|++....-+|..
T Consensus 127 ~~liPFf------clQifDF~Ls~Lta~ss~~ylp~y 157 (258)
T TIGR00799 127 PSKIPLM------TLQLLDFCLSILTLCSSYMEVPTY 157 (258)
T ss_pred cccchHH------HHHHHHHHHHHHHHhhhheechHH
Confidence 111221 124555677778887777666654
No 160
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=27.80 E-value=3.1e+02 Score=27.84 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 334 SHAAVLEESQHMREKLEEQNRALQQAQKDA 363 (603)
Q Consensus 334 ~~a~l~ee~~~~~~~L~~~~~~L~~a~~~~ 363 (603)
...++++|.+++++++.+.+++++...+++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l 96 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNL 96 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777766655555554433
No 161
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=27.06 E-value=2.9e+02 Score=21.89 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=28.0
Q ss_pred HHHHHHhhHhHHHHHH----Hh-------cCCCCchHHHHHHHHHHHHHhhHHHhHH
Q 007463 54 LIAVAYFSIPVELLYF----IS-------CSNVPFKWVLIQFIAFIVLCGLTHLLNG 99 (603)
Q Consensus 54 ~ia~a~~~i~~~l~~~----~~-------~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 99 (603)
+||+....||..++-. .+ ..+.|+.|+=++.|.+..+.|.+.....
T Consensus 4 ~iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~Gf 60 (77)
T PF11118_consen 4 FIALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGF 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhH
Confidence 5677777777776542 11 1234566777777777777776655443
No 162
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.62 E-value=9.4e+02 Score=26.95 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 316 NQELEIVKVVADQVLVALSHAAVLEESQHMREKLEE 351 (603)
Q Consensus 316 ~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~ 351 (603)
...+++|..+++.....-+-...+.+.+..++++++
T Consensus 144 ~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 179 (563)
T TIGR00634 144 DEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKD 179 (563)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888877332222333445555555444443
No 163
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=26.14 E-value=1.2e+02 Score=35.12 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhcc-cC-CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc
Q 007463 484 RRVFQVILHMVGSLLN-CN-SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (603)
Q Consensus 484 ~~l~qvl~NLl~NAik-~~-~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (603)
.-+.+|+..++.||.. -. ++-..|.+.+..+. -.++|.|||.|||-+..
T Consensus 52 pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~-----------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 52 PGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK-----------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred CcHHHHHHHHhhcccccccCCCcceeEEEEccCC-----------------------CEEEEEeCCCcceeeec
Confidence 3478889999999987 11 22345666665553 33899999999986553
No 164
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=25.67 E-value=3.6e+02 Score=22.00 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHh
Q 007463 406 MIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSI 461 (603)
Q Consensus 406 ~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~ 461 (603)
++-+.+.+.++|+..++++++.......+..... ...++.+-.+.+++.....++
T Consensus 25 ~f~~~ld~~s~rll~l~n~ll~~~~~~~~~~~~~-~~~d~d~~~~~vvd~~D~LlE 79 (91)
T PF08066_consen 25 EFAESLDEQSQRLLSLINSLLKSAGSKSNISSPD-DVDDVDERWDSVVDVNDSLLE 79 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCCC-ccccHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999998876554332211 234455555555444444443
No 165
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=25.14 E-value=5.9e+02 Score=27.66 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=44.9
Q ss_pred HhhhhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHhHHhh--c--CcchHHHHHHHHHHHHHHHH
Q 007463 48 QKVSDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT--Y--GPHSFQLMLSLTVFKILTAL 122 (603)
Q Consensus 48 ~~~sd~~ia~a~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~lt~l 122 (603)
-....++.++.+..+....+|+.... .+.....+.++..+++++-+|-+..+.. + -|...+.-.+.++.++++++
T Consensus 358 e~~v~~~~g~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~lp~~~~k~~~DPa~~s~p~itt~~D~~g~~ 437 (449)
T TIGR00400 358 EICVSILVGAILASVNFLRIVFFQGKLLIAFVVSSSLFVSLTVAKILGGLLPIVAKLLKLDPALMSGPLITTIADALTLI 437 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhhHHHHHHHHHHHH
Confidence 44445555555555555555554221 1122222223344444445545544433 2 44444555578899999999
Q ss_pred HHHHHHHHH
Q 007463 123 VSCATSITL 131 (603)
Q Consensus 123 v~~~~ai~l 131 (603)
+.+.+|..+
T Consensus 438 ~~~~~a~~~ 446 (449)
T TIGR00400 438 IYFNIAKWV 446 (449)
T ss_pred HHHHHHHHH
Confidence 888887654
No 166
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.89 E-value=2.4e+02 Score=19.85 Aligned_cols=8 Identities=50% Similarity=0.227 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 007463 117 KILTALVS 124 (603)
Q Consensus 117 ~~lt~lv~ 124 (603)
+.+|+++.
T Consensus 11 Yg~t~~~l 18 (46)
T PF04995_consen 11 YGVTALVL 18 (46)
T ss_pred HHHHHHHH
Confidence 44444433
No 167
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=24.48 E-value=9.2e+02 Score=27.12 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 007463 114 TVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTL 193 (603)
Q Consensus 114 ~~~~~lt~lv~~~~ai~l~~li~~~l~~~~~e~~l~~~~~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~ 193 (603)
....+.+++-++..++.+.-+.-+-+....|...++...++|+.+|.++... -.+.=..+..+|..-.+.+..++.+-
T Consensus 295 ~~~~~~~~~~l~~~~~l~~~~~~Rr~~~~~r~~~~~~a~~eLE~rV~eRTad--L~~~n~~l~~EIaer~~ae~~LR~~Q 372 (603)
T COG4191 295 RTARLAAILTLALLALLLALWLRRRRRARLRLAELQEARAELERRVEERTAD--LTRANARLQAEIAEREQAEAALRRAQ 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555556666655542222 22222345566666667777777777
Q ss_pred HHHHhhhC
Q 007463 194 VELSNTLG 201 (603)
Q Consensus 194 ~~l~~~l~ 201 (603)
+++.+.-+
T Consensus 373 deLvQA~k 380 (603)
T COG4191 373 DELVQAGK 380 (603)
T ss_pred HHHHHHHH
Confidence 77665543
No 168
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=24.33 E-value=8.2e+02 Score=25.44 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=10.4
Q ss_pred ccchhhHHHHHHHHHHh
Q 007463 182 SLDRHTILYTTLVELSN 198 (603)
Q Consensus 182 ~~d~~~il~~~~~~l~~ 198 (603)
.+|.++|-+++..-+.-
T Consensus 294 ~ldl~~I~~QslrL~~~ 310 (340)
T PF12794_consen 294 ELDLEQISQQSLRLLRS 310 (340)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 46777777666655543
No 169
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=24.12 E-value=1.2e+03 Score=27.16 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=25.7
Q ss_pred HHHhhhhHHHHHHHhhHhHHHHHHHhcCCCCch
Q 007463 46 ETQKVSDFLIAVAYFSIPVELLYFISCSNVPFK 78 (603)
Q Consensus 46 ~~~~~sd~~ia~a~~~i~~~l~~~~~~~~~~~~ 78 (603)
.-+++..+++++.+|++...+..++...+..+.
T Consensus 53 ~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~ 85 (701)
T TIGR01667 53 LTGRLKNLIITLSCFSIASFLVQLLFPKPWLFP 85 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 347789999999999999999998765554443
No 170
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=23.14 E-value=6.2e+02 Score=24.05 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=19.5
Q ss_pred ccCCCCCCChhhhH-HHHhhhhHHHHHHHhhHhHHHHHH
Q 007463 32 CDDDASSWSIESIL-ETQKVSDFLIAVAYFSIPVELLYF 69 (603)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~sd~~ia~a~~~i~~~l~~~ 69 (603)
|++-...++.+.+. .|..-.+.+=+...|||...+.|+
T Consensus 51 C~~~~y~~~~~~~w~~C~~rr~~Fr~aqAfaIISI~v~~ 89 (192)
T PTZ00201 51 CKSTEYDVTVDMLWANCPARILQFRVAQALAVISILVYG 89 (192)
T ss_pred CCCCCcCCchHhHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 44333344544333 465566665555555555555554
No 171
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=22.93 E-value=1.6e+02 Score=28.85 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=35.3
Q ss_pred eEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 478 HVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 478 ~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
.+.+||.|..++-. +++|+.+-.....-.+..-..+ + -.+.|.-+|+|-|+.
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~Ref~~~~g~~~-g----------------------~~v~v~StGIGgPSa 72 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASNREFRTYTGTYN-G----------------------KPVTVCSTGIGGPSA 72 (248)
T ss_pred EecCCHHHHHHHHH-HhccchhhhhccceEEEEEEEc-C----------------------eEEEEEecCCCCchH
Confidence 47799999999887 9999988333222233332222 2 458899999998764
No 172
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=22.58 E-value=1.3e+02 Score=25.82 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhHHHhHH
Q 007463 82 IQFIAFIVLCGLTHLLNG 99 (603)
Q Consensus 82 ~l~~~~i~~~~~~~~~~~ 99 (603)
+.|++-|+++-.+|.+-+
T Consensus 62 iffavcI~l~~~s~~lLI 79 (118)
T PF10856_consen 62 IFFAVCILLICISAILLI 79 (118)
T ss_pred EehHHHHHHHHHHHHhhe
Confidence 334444444433444333
No 173
>PRK09776 putative diguanylate cyclase; Provisional
Probab=22.52 E-value=5.7e+02 Score=31.05 Aligned_cols=26 Identities=4% Similarity=-0.055 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHH
Q 007463 370 RNAFQKVMSNGMRRPMHSILGLLSIM 395 (603)
Q Consensus 370 ~~~~l~~~sHeLRtPL~~I~g~~~lL 395 (603)
..++.....||--|.|..-..+.+.+
T Consensus 658 e~~L~~~a~~D~lTgl~nr~~f~~~l 683 (1092)
T PRK09776 658 LRQLSYSASHDALTHLANRASFEKQL 683 (1092)
T ss_pred HHHHHhhcCCCcccCCccHHHHHHHH
Confidence 34455566777666665555554443
No 174
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.21 E-value=1e+02 Score=30.96 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 007463 152 AWDLGREVGIIMKQKEAGVH 171 (603)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~ 171 (603)
.++|+|..++++|||++.+.
T Consensus 73 qeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 73 QEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHhHHHHHHhh
Confidence 57777777777777776554
No 175
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=21.99 E-value=8.5e+02 Score=24.78 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=7.1
Q ss_pred HHHHHhccchhhHHHHH
Q 007463 176 TQEIRKSLDRHTILYTT 192 (603)
Q Consensus 176 t~~i~~~~d~~~il~~~ 192 (603)
.+.+....|-++++.-.
T Consensus 123 ~~~~~~~~d~~ell~L~ 139 (289)
T TIGR01620 123 KETENEVIDGPELIELA 139 (289)
T ss_pred HHhccccCCHHHHHHHH
Confidence 33333444444444443
No 176
>PF14770 TMEM18: Transmembrane protein 18
Probab=21.77 E-value=5.5e+02 Score=22.48 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=21.1
Q ss_pred HHHHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 007463 53 FLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVL 90 (603)
Q Consensus 53 ~~ia~a~~~i~~~l~~~~~~~~~~~~~~~~l~~~~i~~ 90 (603)
+++.+..|=+.+.+...+.++...+...++++....+.
T Consensus 16 wl~~L~~fH~~~~~~~~~tr~~~~~q~~lf~~ll~~v~ 53 (123)
T PF14770_consen 16 WLIGLIAFHVLLLLLAILTRRRYNFQMILFLILLLLVY 53 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 46666666666666666666554444444444444443
No 177
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.05 E-value=1e+03 Score=25.91 Aligned_cols=29 Identities=10% Similarity=0.386 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 007463 367 SQARNAFQKVMSNGMRRPMHSILGLLSIMQ 396 (603)
Q Consensus 367 ~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~ 396 (603)
.+...+|...|..|++|| .++..+-++..
T Consensus 341 ~~~~~~f~~al~DDfnt~-~al~~l~~l~~ 369 (464)
T COG0215 341 KEFEARFREALDDDFNTP-KALAVLFELAK 369 (464)
T ss_pred HHHHHHHHHHHHhccCcH-HHHHHHHHHHH
Confidence 445567999999999999 44444444443
No 178
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.35 E-value=3.7e+02 Score=20.02 Aligned_cols=28 Identities=11% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHHHHHHhhHHHhHHhhc
Q 007463 75 VPFKWVLIQFIAFIVLCGLTHLLNGWTY 102 (603)
Q Consensus 75 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 102 (603)
.....+.+.+|...+..|..++...+.-
T Consensus 19 ~~~~~~~~i~g~~~i~~Gi~~l~~~~~~ 46 (72)
T PF03729_consen 19 ASLAALAIILGIWLIISGIFQLISAFRR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677889999999999999888773
Done!