Query 007463
Match_columns 603
No_of_seqs 516 out of 3562
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 02:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 3.2E-37 1.1E-41 308.5 26.9 220 363-603 13-244 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 1.2E-34 4E-39 291.3 26.0 223 356-603 26-252 (268)
3 3jz3_A Sensor protein QSEC; he 100.0 9E-35 3.1E-39 283.2 13.3 208 370-603 2-213 (222)
4 1gkz_A [3-methyl-2-oxobutanoat 100.0 1.6E-32 5.6E-37 291.0 23.2 216 365-603 116-369 (388)
5 3a0r_A Sensor protein; four he 100.0 1E-31 3.5E-36 279.9 21.7 208 368-603 130-341 (349)
6 3d36_A Sporulation kinase B; G 100.0 1.5E-31 5.3E-36 264.1 21.1 207 367-603 11-221 (244)
7 2q8g_A [pyruvate dehydrogenase 100.0 1.5E-31 5.2E-36 285.3 21.6 208 371-603 107-359 (407)
8 2btz_A Pyruvate dehydrogenase 100.0 8.8E-32 3E-36 286.0 19.6 208 372-603 97-346 (394)
9 2e0a_A Pyruvate dehydrogenase 100.0 2.9E-31 9.8E-36 281.9 22.8 207 372-603 97-346 (394)
10 4fpp_A Phosphotransferase; fou 100.0 1.5E-31 5E-36 265.9 18.3 192 373-603 49-244 (247)
11 1y8o_A [pyruvate dehydrogenase 100.0 2.6E-30 8.9E-35 276.6 22.3 208 371-603 119-370 (419)
12 1b3q_A Protein (chemotaxis pro 99.9 2.8E-25 9.5E-30 234.2 15.3 193 368-603 8-244 (379)
13 3ehh_A Sensor kinase (YOCF pro 99.9 2.3E-24 8E-29 209.2 19.9 203 343-603 6-212 (218)
14 1id0_A PHOQ histidine kinase; 99.9 5.2E-23 1.8E-27 187.8 17.3 137 441-603 2-141 (152)
15 3a0y_A Sensor protein; ATP-LID 99.9 5.3E-23 1.8E-27 187.5 17.0 140 439-603 2-144 (152)
16 1ysr_A Sensor-type histidine k 99.9 2.9E-23 1E-27 189.2 14.5 140 438-603 3-145 (150)
17 1r62_A Nitrogen regulation pro 99.9 1.6E-22 5.5E-27 185.9 11.7 150 437-603 2-155 (160)
18 1bxd_A ENVZ(290-450), protein 99.9 4.6E-22 1.6E-26 183.6 14.3 139 437-603 4-146 (161)
19 3sl2_A Sensor histidine kinase 99.9 7.7E-22 2.6E-26 185.2 15.3 141 442-603 2-148 (177)
20 1i58_A Chemotaxis protein CHEA 99.9 2.1E-21 7.1E-26 184.3 11.7 140 440-603 2-185 (189)
21 3ehg_A Sensor kinase (YOCF pro 99.8 2.6E-18 8.9E-23 152.2 13.1 119 443-603 2-122 (128)
22 3zxo_A Redox sensor histidine 99.7 1E-17 3.5E-22 148.2 12.9 118 441-603 3-124 (129)
23 3zxq_A Hypoxia sensor histidin 99.7 4.6E-16 1.6E-20 136.5 12.9 115 444-603 2-119 (124)
24 2zbk_B Type 2 DNA topoisomeras 99.6 3.8E-15 1.3E-19 161.2 8.9 106 479-602 24-142 (530)
25 1mu5_A Type II DNA topoisomera 99.5 7.5E-15 2.6E-19 157.1 9.6 107 478-602 25-143 (471)
26 1th8_A Anti-sigma F factor; SP 99.5 1E-14 3.4E-19 131.8 9.0 97 479-603 33-135 (145)
27 3p01_A Two-component response 99.5 1.4E-13 4.8E-18 129.3 17.3 169 152-337 12-181 (184)
28 3trc_A Phosphoenolpyruvate-pro 99.5 3.5E-13 1.2E-17 123.9 18.0 165 167-344 5-170 (171)
29 3k2n_A Sigma-54-dependent tran 99.5 2.1E-13 7.1E-18 126.5 16.3 165 166-343 2-174 (177)
30 4glq_A Methyl-accepting chemot 99.5 3.1E-13 1.1E-17 125.7 13.6 156 174-342 1-161 (171)
31 2e4s_A CAMP and CAMP-inhibited 99.5 3.5E-13 1.2E-17 126.3 13.7 171 162-345 5-186 (189)
32 2zmf_A CAMP and CAMP-inhibited 99.5 7.5E-13 2.6E-17 123.8 14.9 166 165-343 8-184 (189)
33 3ci6_A Phosphoenolpyruvate-pro 99.5 2.1E-12 7.1E-17 118.0 17.0 165 164-341 4-169 (171)
34 3oov_A Methyl-accepting chemot 99.4 3.6E-12 1.2E-16 116.8 17.4 159 170-341 2-168 (169)
35 3e0y_A Conserved domain protei 99.4 1E-12 3.6E-17 121.7 12.1 167 161-342 6-173 (181)
36 3o5y_A Sensor protein; GAF dom 99.4 2.3E-12 7.8E-17 119.0 12.9 158 181-353 2-161 (165)
37 2q2e_B Type 2 DNA topoisomeras 99.3 2.5E-13 8.5E-18 148.9 3.6 105 478-602 30-149 (621)
38 2lb5_A Sensor histidine kinase 99.3 1.5E-11 5.1E-16 117.7 12.7 168 161-341 7-203 (208)
39 2vjw_A GAF-B, GAF family prote 99.3 6.9E-11 2.4E-15 107.1 15.8 136 184-342 1-141 (149)
40 1mc0_A 3',5'-cyclic nucleotide 99.2 9.6E-10 3.3E-14 114.5 21.3 167 163-344 174-346 (368)
41 2qyb_A Membrane protein, putat 99.2 1.6E-10 5.6E-15 107.4 12.9 159 170-342 3-165 (181)
42 2w3g_A DOSS, two component sen 99.2 1.8E-10 6E-15 103.4 12.2 148 181-342 3-152 (153)
43 1ykd_A Adenylate cyclase; GAF 99.2 5.2E-10 1.8E-14 118.0 17.2 168 163-345 192-386 (398)
44 3ibj_A CGMP-dependent 3',5'-cy 99.2 1.7E-09 5.7E-14 122.7 22.1 174 165-353 176-355 (691)
45 3dba_A CONE CGMP-specific 3',5 99.1 3.6E-10 1.2E-14 105.7 11.6 155 167-334 4-172 (180)
46 3mmh_A FRMSR, methionine-R-sul 99.1 6.8E-09 2.3E-13 95.5 19.6 150 166-335 13-162 (167)
47 1mc0_A 3',5'-cyclic nucleotide 99.1 1.2E-09 4E-14 113.8 15.4 166 167-346 11-177 (368)
48 2ool_A Sensor protein; bacteri 99.1 2.2E-09 7.6E-14 109.4 16.4 162 167-341 144-333 (337)
49 3hcy_A Putative two-component 99.1 3E-10 1E-14 102.3 8.6 143 182-341 1-145 (151)
50 3nhq_A Bacteriophytochrome; ph 99.0 1E-08 3.4E-13 110.0 20.8 162 167-341 122-311 (505)
51 3zq5_A Phytochrome-like protei 99.0 1.1E-08 3.6E-13 110.1 19.8 161 168-341 136-324 (520)
52 4e04_A Bacteriophytochrome (li 99.0 4.8E-09 1.6E-13 105.8 16.0 157 168-337 132-316 (327)
53 3s7o_A Bacteriophytochrome; bi 99.0 4.8E-09 1.6E-13 106.1 15.1 158 167-337 149-334 (343)
54 3cit_A Sensor histidine kinase 99.0 7.4E-09 2.5E-13 92.8 14.1 148 162-344 7-156 (160)
55 3ibj_A CGMP-dependent 3',5'-cy 99.0 2.9E-09 1E-13 120.7 14.0 165 165-344 10-175 (691)
56 1vhm_A Protein YEBR; structura 99.0 1.7E-08 5.8E-13 95.2 16.6 153 164-338 23-176 (195)
57 1ykd_A Adenylate cyclase; GAF 99.0 1.1E-08 3.9E-13 107.7 17.2 167 166-347 5-196 (398)
58 2k2n_A Sensor protein, SYB-CPH 98.9 1.2E-08 4E-13 94.4 14.2 142 185-339 1-171 (172)
59 1f5m_A GAF; CGMP binding, sign 98.7 4.1E-07 1.4E-11 84.7 17.5 145 169-333 26-177 (180)
60 3rfb_A Putative uncharacterize 98.7 4.3E-07 1.5E-11 83.3 16.7 143 169-333 17-160 (171)
61 4eho_A Bacteriophytochrome, PA 98.7 3.5E-07 1.2E-11 102.2 18.8 158 172-342 134-319 (635)
62 3ksh_A Putative uncharacterize 98.7 5.1E-07 1.8E-11 81.9 15.2 141 171-333 18-159 (160)
63 3bjc_A CGMP-specific 3',5'-cyc 98.5 9.3E-09 3.2E-13 119.5 0.0 173 163-348 146-332 (878)
64 3eea_A GAF domain/HD domain pr 98.5 4.4E-07 1.5E-11 77.1 9.8 149 178-341 7-162 (162)
65 1kij_A DNA gyrase subunit B; t 98.5 4.2E-08 1.4E-12 102.4 4.5 82 480-587 31-127 (390)
66 1h7s_A PMS1 protein homolog 2; 98.5 1.8E-07 6.3E-12 96.7 8.0 75 485-583 34-117 (365)
67 3zcc_A HAMP, osmolarity sensor 98.4 8.8E-07 3E-11 75.0 9.1 59 366-429 56-114 (114)
68 3bjc_A CGMP-specific 3',5'-cyc 98.4 3.9E-08 1.3E-12 114.2 0.0 173 165-350 329-523 (878)
69 1b63_A MUTL; DNA mismatch repa 98.3 8.1E-07 2.8E-11 91.0 6.7 75 485-583 24-107 (333)
70 1ixm_A SPO0B, protein (sporula 98.3 6.4E-06 2.2E-10 77.1 12.0 140 371-563 22-170 (192)
71 3ke6_A Protein RV1364C/MT1410; 98.2 1E-06 3.4E-11 92.9 4.5 85 482-602 294-381 (399)
72 3na3_A DNA mismatch repair pro 98.1 3.5E-06 1.2E-10 86.0 7.9 75 485-583 28-111 (348)
73 2ksf_A Sensor protein KDPD; me 97.9 3.6E-06 1.2E-10 70.8 3.0 83 50-134 4-99 (107)
74 3zrx_A AF1503 protein, osmolar 97.9 4.3E-05 1.5E-09 64.3 9.1 58 368-430 58-115 (115)
75 3h4l_A DNA mismatch repair pro 97.7 2E-05 6.9E-10 81.1 5.4 57 485-565 25-81 (367)
76 2wer_A ATP-dependent molecular 97.0 0.00012 4E-09 70.3 0.4 76 488-584 29-131 (220)
77 1s16_A Topoisomerase IV subuni 97.0 0.00073 2.5E-08 70.3 6.1 77 483-585 33-124 (390)
78 4eu0_A PELD; C-DI-GMP, signali 96.8 0.0064 2.2E-07 60.4 11.0 130 186-339 25-156 (298)
79 2ior_A Chaperone protein HTPG; 96.6 0.00037 1.3E-08 67.4 0.6 54 488-562 50-117 (235)
80 1ei1_A DNA gyrase B, GYRB; ATP 96.4 0.0022 7.4E-08 66.7 4.5 77 485-585 34-127 (391)
81 1yc1_A HSP 86, heat shock prot 96.2 0.0011 3.8E-08 65.0 1.3 76 488-584 71-173 (264)
82 3e98_A GAF domain of unknown f 96.0 0.079 2.7E-06 51.4 13.1 160 148-335 77-243 (252)
83 2gqp_A Endoplasmin; GRP94, HSP 95.6 0.0034 1.1E-07 60.6 1.7 54 488-562 35-102 (236)
84 4duh_A DNA gyrase subunit B; s 95.6 0.011 3.7E-07 56.3 5.1 77 484-584 34-127 (220)
85 1zxm_A TOPO IIA ATPase, DNA to 95.6 0.014 4.6E-07 60.7 6.1 77 484-583 51-145 (400)
86 3t0h_A Heat shock protein HSP 95.3 0.0051 1.8E-07 58.8 1.7 53 488-561 35-101 (228)
87 4emv_A DNA topoisomerase IV, B 95.2 0.016 5.3E-07 55.3 4.8 79 482-584 37-131 (226)
88 1pvg_A DNA topoisomerase II; G 95.2 0.027 9.3E-07 58.8 6.8 77 485-584 64-158 (418)
89 3cwv_A DNA gyrase, B subunit, 95.1 0.0063 2.2E-07 62.6 1.6 47 482-552 27-75 (369)
90 1qy5_A Endoplasmin; GRP94, NEC 95.0 0.0074 2.5E-07 59.2 1.9 52 489-561 32-97 (269)
91 3fv5_A DNA topoisomerase 4 sub 94.2 0.032 1.1E-06 52.2 4.1 45 487-555 19-65 (201)
92 3ttz_A DNA gyrase subunit B; p 94.0 0.063 2.2E-06 50.1 5.5 49 482-554 28-78 (198)
93 3peh_A Endoplasmin homolog; st 93.9 0.018 6.2E-07 56.4 1.8 44 540-583 94-151 (281)
94 3o0i_A HSP90AA1 protein; HSP90 93.8 0.014 4.8E-07 56.6 0.7 51 488-559 63-127 (256)
95 1y4s_A Chaperone protein HTPG; 93.8 0.041 1.4E-06 59.5 4.4 76 488-584 30-134 (559)
96 2cg9_A ATP-dependent molecular 93.7 0.034 1.2E-06 61.3 3.7 73 488-581 29-128 (677)
97 3nmq_A Heat shock protein HSP 93.0 0.021 7.2E-07 54.7 0.6 46 539-584 86-144 (239)
98 3lnu_A Topoisomerase IV subuni 92.5 0.088 3E-06 54.5 4.4 44 541-584 84-142 (408)
99 2o1u_A Endoplasmin; GRP94, HSP 92.0 0.055 1.9E-06 59.6 2.3 58 479-560 42-113 (666)
100 2ioq_A Chaperone protein HTPG; 92.0 0.047 1.6E-06 59.9 1.7 52 488-560 30-95 (624)
101 4gfh_A DNA topoisomerase 2; to 85.6 1.7 5.7E-05 51.3 8.6 78 485-585 59-154 (1177)
102 3ied_A Heat shock protein; HSP 76.6 0.58 2E-05 44.9 0.4 44 540-583 131-188 (272)
103 2w1r_A Spovt, stage V sporulat 73.6 22 0.00076 29.8 9.6 116 189-331 4-119 (123)
104 3nhq_A Bacteriophytochrome; ph 61.6 11 0.00037 40.1 6.3 49 163-211 313-361 (505)
105 3szt_A QCSR, quorum-sensing co 45.7 1.1E+02 0.0038 28.4 10.1 141 174-329 7-152 (237)
106 3l39_A Putative PHOU-like phos 38.7 1.8E+02 0.0061 26.9 10.2 112 314-428 21-153 (227)
107 4eho_A Bacteriophytochrome, PA 33.5 38 0.0013 37.1 5.1 43 169-211 326-368 (635)
108 3zq5_A Phytochrome-like protei 33.4 1.3E+02 0.0045 31.8 9.1 48 163-210 326-373 (520)
109 3rlb_A THIT; S-component, ECF 23.7 4E+02 0.014 23.9 10.2 18 46-63 88-105 (192)
110 3ra3_B P2F; coiled coil domain 22.0 1.2E+02 0.0042 17.3 3.5 18 148-165 5-22 (28)
111 3cvf_A Homer-3, homer protein 21.3 2.8E+02 0.0094 21.2 7.6 19 343-361 23-41 (79)
112 2zy9_A Mg2+ transporter MGTE; 20.4 4.4E+02 0.015 27.3 10.3 84 48-131 382-469 (473)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=3.2e-37 Score=308.50 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccce
Q 007463 363 ALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV--N-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLE 439 (603)
Q Consensus 363 ~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~--~-~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~ 439 (603)
+++.++.+.+|++.+||||||||++|.++++++.+. . ..++.+++++.|.+.++++..++++++++++++.+...++
T Consensus 13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 92 (258)
T 2c2a_A 13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN 92 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCc
Confidence 344467788999999999999999999999998742 2 2344678999999999999999999999999999988889
Q ss_pred eeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCC---cEEEEEEEeecC
Q 007463 440 IRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR---GTVLFRVVSENG 516 (603)
Q Consensus 440 ~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~---g~i~i~v~~~~~ 516 (603)
.+++++.+++++++..++..+..+++.+.++.+.+.|..+.+|+.++.||+.||+.||+||++++ +.|.|.+...++
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~ 172 (258)
T 2c2a_A 93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG 172 (258)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred cceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCC
Confidence 99999999999999999999999999999887644454789999999999999999999998654 568887766543
Q ss_pred CCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccC---CCCCCCchHHHHHHHHHHhCCeec-
Q 007463 517 SQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---EGIEDRMSFSVCKKLVQVRISIKF- 592 (603)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---~~~G~GLGL~i~k~iv~~~gG~I~- 592 (603)
.+.|+|.|+|+|||++..+++|++|++.... +.+|+||||+|||++++.|||+|+
T Consensus 173 ---------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 231 (258)
T 2c2a_A 173 ---------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV 231 (258)
T ss_dssp ---------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred ---------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEE
Confidence 3889999999999999999999999985432 346999999999999999999999
Q ss_pred --cCCcceEEEEC
Q 007463 593 --PAYVFTCFRVT 603 (603)
Q Consensus 593 --~~g~Gt~f~it 603 (603)
.+|+||+|+|+
T Consensus 232 ~s~~~~Gt~f~i~ 244 (258)
T 2c2a_A 232 ESEVGKGSRFFVW 244 (258)
T ss_dssp EEETTTEEEEEEE
T ss_pred EecCCCCcEEEEE
Confidence 67899999984
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=1.2e-34 Score=291.26 Aligned_cols=223 Identities=19% Similarity=0.261 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCC
Q 007463 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV-NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (603)
Q Consensus 356 L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~-~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g 434 (603)
+++..+++++.++.+.+|++.++|||||||++|.++++++.+. ..+++.+++++.|.+.++++..++++++++++.+.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3333444455567778999999999999999999999999864 356778899999999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEee
Q 007463 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (603)
Q Consensus 435 ~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~ 514 (603)
...++.+++++.+++++++..+...+..+++.+.++++++.+ .+.+|+..+.+|+.||+.||+||+++++.|.|++...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999988876 7999999999999999999999998889999999876
Q ss_pred cCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec--
Q 007463 515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF-- 592 (603)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~-- 592 (603)
++ .+.|+|.|+|+||+++..+++|++|++.. .+|+|+||++||++++.|||+|+
T Consensus 185 ~~---------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~---~~g~GlGL~i~~~~~~~~gG~i~i~ 240 (268)
T 4ew8_A 185 LG---------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRD---RGGPGLGLALVKALVELHGGWVALE 240 (268)
T ss_dssp SS---------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCS---SCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CC---------------------EEEEEEEcCCCCCCHHHHHHHHHHHhcCC---CCCCcccHHHHHHHHHHcCCEEEEE
Confidence 44 38999999999999999999999998533 35999999999999999999999
Q ss_pred -cCCcceEEEEC
Q 007463 593 -PAYVFTCFRVT 603 (603)
Q Consensus 593 -~~g~Gt~f~it 603 (603)
.+++||+|+|+
T Consensus 241 s~~~~Gt~~~i~ 252 (268)
T 4ew8_A 241 SEPGNGSTFTCH 252 (268)
T ss_dssp ECTTSCEEEEEE
T ss_pred ecCCCCEEEEEE
Confidence 67889999874
No 3
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=9e-35 Score=283.17 Aligned_cols=208 Identities=9% Similarity=0.082 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHH
Q 007463 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLN-SDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (603)
Q Consensus 370 ~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~-~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~l 448 (603)
+.+|++.++|||||||++|.++++++.....+ ++.+++++.|.++++++..++++++++++.+.+....+.+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 35799999999999999999999998754433 33477889999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccc
Q 007463 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATW 528 (603)
Q Consensus 449 i~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~ 528 (603)
+++++..+...+..+++.+.++++++.+ .+.+|+..+.||+.||+.||+||+++++.|.|++...
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~~-------------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNAD-------------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECSS--------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce-EEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccC--------------
Confidence 9999999999999999999999988755 7999999999999999999999998999888877432
Q ss_pred cccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 529 RQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 529 ~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
- |.|.|+|+||+++.++++|++|++..+.+.+|+||||++||++++.|||+|+ .+++||+|+++
T Consensus 147 ----------~-i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~ 213 (222)
T 3jz3_A 147 ----------N-FIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVS 213 (222)
T ss_dssp ----------E-EEEECSCC--------------------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEE
T ss_pred ----------e-EEEEECCCCCCHHHHHHHHhhhccCCCCCCCcccccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEe
Confidence 1 8899999999999999999999986655667999999999999999999999 78899999974
No 4
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=1.6e-32 Score=291.03 Aligned_cols=216 Identities=7% Similarity=-0.019 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHH-HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeee
Q 007463 365 MASQARNAFQKVMSNGMRRPMHSIL-GLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443 (603)
Q Consensus 365 ~a~~~~~~~l~~~sHeLRtPL~~I~-g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~ 443 (603)
+.++.+.+|++.++||+||||++|. |+.+++.....+++.+++++.|.++..++..++++++++++.+.+...+..+++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 3356778999999999999999999 666665544446677899999999999999999999999999999999999999
Q ss_pred eHHHHHHHHHHHHHHHHhhc---CcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCc--------EEEEEEE
Q 007463 444 RLHAMIKEAACLARCLSIYR---GFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG--------TVLFRVV 512 (603)
Q Consensus 444 ~l~~li~~~~~~~~~~~~~~---~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g--------~i~i~v~ 512 (603)
++.+++++++..++..+..+ .+.+.++.+.+ ..+.+|+.+|.||+.||+.||+||+++++ .|.|++.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC--CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999999888 34455555443 36889999999999999999999987765 8999887
Q ss_pred eecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCC-----------------------
Q 007463 513 SENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNE----------------------- 569 (603)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~----------------------- 569 (603)
..++ .+.|.|+|+|+|||++.++++|++|++.....
T Consensus 274 ~~~~---------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (388)
T 1gkz_A 274 NNDV---------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGP 332 (388)
T ss_dssp ECSS---------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------C
T ss_pred eCCC---------------------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCC
Confidence 6543 39999999999999999999999998855421
Q ss_pred CCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 570 GIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 570 ~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
.+|+||||+|||.+++.|||+|+ .+|+||+|+|+
T Consensus 333 ~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~ 369 (388)
T 1gkz_A 333 MHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLR 369 (388)
T ss_dssp CSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEE
T ss_pred cCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEE
Confidence 26999999999999999999999 67899999974
No 5
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.98 E-value=1e-31 Score=279.94 Aligned_cols=208 Identities=15% Similarity=0.218 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHH
Q 007463 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (603)
Q Consensus 368 ~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~ 446 (603)
+.+++|++.++||+||||++|.++++++.+... +++.+++++.|.+.++++..++++++++++. ...+..+++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 355789999999999999999999999986433 3345789999999999999999999999984 335678899999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccc
Q 007463 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWA 526 (603)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~ 526 (603)
+++++++..+...+..+++.+.++++++.+ .+.+|+..+.||+.||+.||+||++++|.|.|++...++
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------- 275 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------- 275 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCC----------
Confidence 999999999999999999999999887655 799999999999999999999999889999999887644
Q ss_pred cccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHH-HhCCeec--cCCcceEEEEC
Q 007463 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQ-VRISIKF--PAYVFTCFRVT 603 (603)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~-~~gG~I~--~~g~Gt~f~it 603 (603)
.+.|+|+|+|+|||++..+++|++|++.+ .+|+||||++||++++ .|||.++ ..++||+|+|+
T Consensus 276 -----------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~---~~g~GlGL~i~~~~v~~~~gg~i~~~~~~~Gt~f~i~ 341 (349)
T 3a0r_A 276 -----------KVRVSVWNSGPPIPEELKEKIFSPFFTTK---TQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFE 341 (349)
T ss_dssp -----------EEEEEEEEESCCCCGGGGTTTSSSCCCC---------CCCTHHHHHHHHTTCSBCCEEECSSEEEEEEE
T ss_pred -----------EEEEEEEECCCCCChHHHhhcCCCCccCC---CCCccchHHHHHHHHHHhCCCEEEEEeCCCcEEEEEE
Confidence 38999999999999999999999998643 4699999999999999 8999999 45569999984
No 6
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.98 E-value=1.5e-31 Score=264.13 Aligned_cols=207 Identities=13% Similarity=0.172 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeH
Q 007463 367 SQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNS-DQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRL 445 (603)
Q Consensus 367 ~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~-~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l 445 (603)
.+.++.|++.++|||||||++|.++++++.+...++ +.+++++.+.+.++++..++++++++++.+.+ ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 345678999999999999999999999998765544 46789999999999999999999999997655 4579999
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCcccccc
Q 007463 446 HAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKW 525 (603)
Q Consensus 446 ~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~ 525 (603)
..++++++..++..+..+++.+.++.++ + .+.+|+..+.+++.||+.||+||+++++.|.|++...++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP--F-SVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC--C-EEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC--c-eEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC---------
Confidence 9999999999999999998888887654 3 699999999999999999999998899999999987654
Q ss_pred ccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEE
Q 007463 526 ATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRV 602 (603)
Q Consensus 526 ~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~i 602 (603)
.+.|+|.|+|+||+++..+++|++|++... ..|+|+||++||++++.|||+|+ .+++||+|+|
T Consensus 155 ------------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~--~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i 220 (244)
T 3d36_A 155 ------------RVLIRIADTGVGMTKEQLERLGEPYFTTKG--VKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSI 220 (244)
T ss_dssp ------------EEEEEEEECSSCCCHHHHHHTTSTTCCSSG--GGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEE
T ss_pred ------------EEEEEEEecCCCCCHHHHHHHhcccccCCC--CCCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 388999999999999999999999987542 35899999999999999999999 5688999987
Q ss_pred C
Q 007463 603 T 603 (603)
Q Consensus 603 t 603 (603)
+
T Consensus 221 ~ 221 (244)
T 3d36_A 221 Y 221 (244)
T ss_dssp E
T ss_pred E
Confidence 4
No 7
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.98 E-value=1.5e-31 Score=285.28 Aligned_cols=208 Identities=9% Similarity=0.002 Sum_probs=172.7
Q ss_pred HHHHHHHHhhccc-----hhHHHHHHHHHHhccCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHhhCcCCC----C-
Q 007463 371 NAFQKVMSNGMRR-----PMHSILGLLSIMQDVNLN----SDQRMIVET--MMKSSNVLSTLISDVMDNSPKDS----G- 434 (603)
Q Consensus 371 ~~~l~~~sHeLRt-----PL~~I~g~~~lL~~~~~~----~~~~~~l~~--i~~~~~~l~~li~~lld~sr~e~----g- 434 (603)
..|.+.+ ||||| ||+.|.|+++++.....+ ++.+++++. +.+.+.+| +|++++++++.+. +
T Consensus 107 ~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~ 183 (407)
T 2q8g_A 107 YDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSH 183 (407)
T ss_dssp HHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC---------
T ss_pred HHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCC
Confidence 4566655 99999 999999999987754332 234678887 77888999 9999999999875 3
Q ss_pred --CccceeeeeeHHHHHHHHHHHHHHHHhhc-----CcEEEEEE---CCCCCceEEecHHHHHHHHHHHHHhhcccCCCC
Q 007463 435 --RFPLEIRSFRLHAMIKEAACLARCLSIYR-----GFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR 504 (603)
Q Consensus 435 --~~~l~~~~~~l~~li~~~~~~~~~~~~~~-----~i~l~~~~---~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~ 504 (603)
...+..+++++.+++++++..++..+..+ ++.+.+++ ++. +..+.+|+.+|.||+.||++||+||++++
T Consensus 184 ~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 184 RKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQ-PIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp -CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCC-CeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 56788899999999999999999999888 89988877 233 33799999999999999999999998776
Q ss_pred c-------EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccC---------
Q 007463 505 G-------TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN--------- 568 (603)
Q Consensus 505 g-------~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~--------- 568 (603)
+ .|.|++...++ .+.|.|+|+|+|||++.++++|++|++....
T Consensus 263 ~~~~~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~ 321 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE---------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAV 321 (407)
T ss_dssp STTTCCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCC
T ss_pred cccCCCCCCEEEEEEeCCC---------------------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCC
Confidence 6 79998876543 3899999999999999999999999985442
Q ss_pred CCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 569 EGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 569 ~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
..+|+||||+|||.+++.|||+|+ .+|+||+|+|+
T Consensus 322 ~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~ 359 (407)
T 2q8g_A 322 PLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIY 359 (407)
T ss_dssp CSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEE
T ss_pred CCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEE
Confidence 236999999999999999999999 67899999974
No 8
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.98 E-value=8.8e-32 Score=285.97 Aligned_cols=208 Identities=8% Similarity=-0.005 Sum_probs=167.8
Q ss_pred HHHHHHHhhccc-----hhHHHHHHHHHHhccCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHhhCcCCC-CCccce
Q 007463 372 AFQKVMSNGMRR-----PMHSILGLLSIMQDVNLNSD----QRMIVE--TMMKSSNVLSTLISDVMDNSPKDS-GRFPLE 439 (603)
Q Consensus 372 ~~l~~~sHeLRt-----PL~~I~g~~~lL~~~~~~~~----~~~~l~--~i~~~~~~l~~li~~lld~sr~e~-g~~~l~ 439 (603)
++++.++||||| ||+.|.|+++++.+...++. .+++++ .+.+.+.+| +|++++++++.+. +..+..
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 477888999999 99999999999886544433 344777 488889999 9999999999987 566777
Q ss_pred e----eeeeHHHHHHHHHHHHHHHHhh-----cCcEEEEEE---CCCCCceEEecHHHHHHHHHHHHHhhcccCCCCc--
Q 007463 440 I----RSFRLHAMIKEAACLARCLSIY-----RGFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG-- 505 (603)
Q Consensus 440 ~----~~~~l~~li~~~~~~~~~~~~~-----~~i~l~~~~---~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g-- 505 (603)
. +++++.+++++++..++..+.. +++.+.+.. ++. +..+.+|+.+|.||+.||++||+||+++++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 253 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQ-PIHMVYVPSHLYHMLFELFKNAMRATVESHES 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCC-CeEEEecHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 7 8999999999999999999987 888888754 233 337999999999999999999999988776
Q ss_pred -----EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccC--------CCCC
Q 007463 506 -----TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN--------EGIE 572 (603)
Q Consensus 506 -----~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~--------~~~G 572 (603)
.|.|++...++ .+.|+|+|+|+|||++.++++|++|++.... ..+|
T Consensus 254 ~~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G 312 (394)
T 2btz_A 254 SLILPPIKVMVALGEE---------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAG 312 (394)
T ss_dssp CSCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC-------------
T ss_pred CCCCCCEEEEEEeCCC---------------------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCC
Confidence 68888876543 3999999999999999999999999985442 2469
Q ss_pred CCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 573 DRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 573 ~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+||||+|||.+++.|||+|+ .+|+||+|+|+
T Consensus 313 ~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~ 346 (394)
T 2btz_A 313 FGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIY 346 (394)
T ss_dssp -CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEE
T ss_pred ccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEE
Confidence 99999999999999999999 67899999974
No 9
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.97 E-value=2.9e-31 Score=281.93 Aligned_cols=207 Identities=10% Similarity=0.015 Sum_probs=175.5
Q ss_pred HHHHHHHhhccc-----hhHHHHHHHHHHhccC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHh-hCcCCCCCccce
Q 007463 372 AFQKVMSNGMRR-----PMHSILGLLSIMQDVN----LNSDQRMIVE--TMMKSSNVLSTLISDVMD-NSPKDSGRFPLE 439 (603)
Q Consensus 372 ~~l~~~sHeLRt-----PL~~I~g~~~lL~~~~----~~~~~~~~l~--~i~~~~~~l~~li~~lld-~sr~e~g~~~l~ 439 (603)
++++.++||||| ||+.|.|+++++.... ..++.+++++ .|.+.+.+| +|+++++ +++. .+..++.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 356778899999 8999999999776432 2344578898 699999999 9999998 7776 6777777
Q ss_pred e----eeeeHHHHHHHHHHHHHHHHhhc-----CcEEEEEE---CCCCCceEEecHHHHHHHHHHHHHhhcccCCCCc--
Q 007463 440 I----RSFRLHAMIKEAACLARCLSIYR-----GFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG-- 505 (603)
Q Consensus 440 ~----~~~~l~~li~~~~~~~~~~~~~~-----~i~l~~~~---~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g-- 505 (603)
. +++++.+++++++..++..+..+ ++.+.+++ ++. +..+.+|+.+|.||+.||++||+||+++++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQ-PIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCC-CeEEEEcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7 89999999999999999999988 88888864 223 337999999999999999999999987766
Q ss_pred -----EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccC---------CCC
Q 007463 506 -----TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---------EGI 571 (603)
Q Consensus 506 -----~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---------~~~ 571 (603)
.|.|++...++ .+.|.|+|+|+|||++.++++|++|++.... ..+
T Consensus 253 ~~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~ 311 (394)
T 2e0a_A 253 QPSLTPIEVIVVLGKE---------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLA 311 (394)
T ss_dssp SSSCCCEEEEEEECSS---------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSS
T ss_pred cCCCCCEEEEEEeCCC---------------------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCC
Confidence 68888876543 3999999999999999999999999985442 346
Q ss_pred CCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 572 EDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 572 G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
|+||||+|||.+++.|||+|+ .+|+||+|+|+
T Consensus 312 G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~ 346 (394)
T 2e0a_A 312 GFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIY 346 (394)
T ss_dssp CSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEE
T ss_pred CcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEE
Confidence 999999999999999999999 67889999974
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=1.5e-31 Score=265.86 Aligned_cols=192 Identities=10% Similarity=0.052 Sum_probs=151.8
Q ss_pred HHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHHHH
Q 007463 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEA 452 (603)
Q Consensus 373 ~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~~~ 452 (603)
+.+.|||||||||++|.|++++|.+...+++.+++++.|.++++++..+++.+ |+..+. ....+++++.++.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll~~~----r~~~~~-~~~~~~~~~~~l~--- 120 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLLQFT----RVAFGA-SASAENFDSRELE--- 120 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHHHH----HHHTTC-CSSCCCEEHHHHH---
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHH----HHhhcc-ccccccccHHHHH---
Confidence 67789999999999999999999977767777889999999999988777543 322222 2234577776654
Q ss_pred HHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccC
Q 007463 453 ACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSS 532 (603)
Q Consensus 453 ~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~ 532 (603)
..++..+..+++.+..++++.. ++..+.|++.||+.||+||++++|.|+|++...++.
T Consensus 121 -~~~~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~--------------- 178 (247)
T 4fpp_A 121 -KLAQGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAADGR--------------- 178 (247)
T ss_dssp -HHHHHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTE---------------
T ss_pred -HHHHHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCE---------------
Confidence 3445566778788777554321 256789999999999999999999999999887553
Q ss_pred CCCceEEEEEEEEcCCC--CCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec--cCCcceEEEEC
Q 007463 533 VDGDVHIRFEILLNEVG--SQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF--PAYVFTCFRVT 603 (603)
Q Consensus 533 ~~~~~~v~i~V~D~G~G--i~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~--~~g~Gt~f~it 603 (603)
+.|.|+|+|+| ||++.++++|++|++. +.+|+||||+|||+||++|||+|+ ..++||+|+|+
T Consensus 179 ------~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~---~~~G~GLGLai~~~iv~~hGG~i~v~s~~~G~~f~v~ 244 (247)
T 4fpp_A 179 ------FSIIADAKGPRARLRPEVLAGLKGEPLAE---GLGGPWVQAAYLNALVRAAGGQIAVEIGEDRASIAAW 244 (247)
T ss_dssp ------EEEEEEEESTTCCCCHHHHHHHTTCCCCS---SCHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEE
T ss_pred ------EEEEEEEcCCCCCCCHHHHHHhcCCCCCC---CCCCccHHHHHHHHHHHHcCCEEEEEEcCCEEEEEEE
Confidence 88999999988 6788889999888653 345999999999999999999999 44559999984
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97 E-value=2.6e-30 Score=276.62 Aligned_cols=208 Identities=10% Similarity=0.002 Sum_probs=163.0
Q ss_pred HHHHHHHHhhccchhH-----HHHHHHHHHhccCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHhhCcC-CCCCccc
Q 007463 371 NAFQKVMSNGMRRPMH-----SILGLLSIMQDVNLN----SDQRMIVETMMKS--SNVLSTLISDVMDNSPK-DSGRFPL 438 (603)
Q Consensus 371 ~~~l~~~sHeLRtPL~-----~I~g~~~lL~~~~~~----~~~~~~l~~i~~~--~~~l~~li~~lld~sr~-e~g~~~l 438 (603)
.+|.+ ++|||||||+ .|.|+++++.....+ ++.+++++.|..+ +.++ +|++++..++. +.+..+.
T Consensus 119 ~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~ 195 (419)
T 1y8o_A 119 DNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPK 195 (419)
T ss_dssp HHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTT
T ss_pred HHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCC
Confidence 45665 5599999999 789999987653222 3346788886665 7888 99999665544 3343333
Q ss_pred ----eeeeeeHHHHHHHHHHHHHHHHhh-----cCcEEEEEEC---CCCCceEEecHHHHHHHHHHHHHhhcccCCCCc-
Q 007463 439 ----EIRSFRLHAMIKEAACLARCLSIY-----RGFGFSIEVD---RSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG- 505 (603)
Q Consensus 439 ----~~~~~~l~~li~~~~~~~~~~~~~-----~~i~l~~~~~---~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g- 505 (603)
..+++++.+++++++..++..+.. +++.+.+... +. +..+.+|+.+|.||+.||++||+||+++++
T Consensus 196 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 196 HIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDK-PIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCC-CeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 348999999999999999998876 7777776441 23 337999999999999999999999987765
Q ss_pred -------EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccC---------C
Q 007463 506 -------TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---------E 569 (603)
Q Consensus 506 -------~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---------~ 569 (603)
.|.|.+...++ .+.|+|+|+|+|||++.++++|++|++.... .
T Consensus 275 ~~~~~~~~I~I~~~~~~~---------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~ 333 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKE---------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAP 333 (419)
T ss_dssp TCSSCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------C
T ss_pred ccCCCCCCEEEEEEeCCC---------------------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCC
Confidence 78888865533 3899999999999999999999999985432 3
Q ss_pred CCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 570 GIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 570 ~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
.+|+||||+|||++++.|||+|+ .+|+||+|+|+
T Consensus 334 ~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~ 370 (419)
T 1y8o_A 334 LAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIY 370 (419)
T ss_dssp C--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEE
T ss_pred cCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEE
Confidence 56999999999999999999999 67899999974
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.92 E-value=2.8e-25 Score=234.16 Aligned_cols=193 Identities=14% Similarity=0.061 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHH
Q 007463 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (603)
Q Consensus 368 ~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~ 447 (603)
..|.+++..++|||++|++.+.++.+.+.. +.+.+.++++.++++++++++. +.+++++.+
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHH
Confidence 456789999999999999999887655432 5688889999999999999863 345788899
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHH---HHHHHHHHHhhcccC------------CCCcEEEEEEE
Q 007463 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRV---FQVILHMVGSLLNCN------------SRRGTVLFRVV 512 (603)
Q Consensus 448 li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l---~qvl~NLl~NAik~~------------~~~g~i~i~v~ 512 (603)
+++.+...++..+...+..++++++.. .+..|+..+ .|++.||+.||+||. +++|.|+|++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~---~~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~ 145 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGE---DTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR 145 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECT---TCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCC---CeeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEE
Confidence 999999999999988888888887654 256788654 555999999999987 78899999998
Q ss_pred eecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc------------------------cccccccccccc-
Q 007463 513 SENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS------------------------TSVAQLGIRRIV- 567 (603)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~------------------------~~if~~f~~~~~- 567 (603)
..++ ++.|+|+|+|+||+++.+ +++|+||+++..
T Consensus 146 ~~~~---------------------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~ 204 (379)
T 1b3q_A 146 HEGN---------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK 204 (379)
T ss_dssp EETT---------------------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC----
T ss_pred EeCC---------------------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCc
Confidence 7654 399999999999999987 889999876443
Q ss_pred -CCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 568 -NEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 568 -~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+..+|+|+||++||++++.|||+|+ .+|+||+|+|+
T Consensus 205 ~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~ 244 (379)
T 1b3q_A 205 VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIR 244 (379)
T ss_dssp -------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEE
T ss_pred cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEec
Confidence 2346999999999999999999999 68999999974
No 13
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.92 E-value=2.3e-24 Score=209.17 Aligned_cols=203 Identities=8% Similarity=0.059 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHH
Q 007463 343 QHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV--NLNSDQRMIVETMMKSSNVLST 420 (603)
Q Consensus 343 ~~~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~--~~~~~~~~~l~~i~~~~~~l~~ 420 (603)
+++++++++.++++++... .+.+..+...+.|++++||++|.+.++++... ..+++.++.++.+.+.++++..
T Consensus 6 ~~l~~~l~~~~~~l~~~~~-----~~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 80 (218)
T 3ehh_A 6 ERLEEKLEDANERIAELVK-----LEERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLN 80 (218)
T ss_dssp ----------CTTHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443321 34457788999999999999999999988742 2233457788999999998888
Q ss_pred HHHHHHhhCcCCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhccc
Q 007463 421 LISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNC 500 (603)
Q Consensus 421 li~~lld~sr~e~g~~~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~ 500 (603)
.+.+++...+ +.++.+.+..+...+ ...++.+.++++.+.+.....|+..+.+++.|++.||+||
T Consensus 81 ~~r~~~~~~~-----------~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~ 145 (218)
T 3ehh_A 81 EVRKIVSSMK-----------GIRLKDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKH 145 (218)
T ss_dssp HHHHHHTTTC-----------CCCHHHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----------CcCHHHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8888875433 457777776655544 5678888888776554445678889999999999999997
Q ss_pred CCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHH
Q 007463 501 NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVC 580 (603)
Q Consensus 501 ~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~ 580 (603)
++ ++.|.|++...++ .+.|+|.|+|+|||++.. +|+|+||++|
T Consensus 146 ~~-~~~i~i~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~---------------~g~GlGL~~~ 188 (218)
T 3ehh_A 146 SQ-AKTCRVDIQQLWK---------------------EVVITVSDDGTFKGEENS---------------FSKGHGLLGM 188 (218)
T ss_dssp TC-CSEEEEEEEEETT---------------------EEEEEEEESSCCCC-----------------------CHHHHH
T ss_pred CC-CCEEEEEEEEeCC---------------------EEEEEEEECCcCCCCCCC---------------CCCCCCHHHH
Confidence 74 5789999887654 389999999999998864 4899999999
Q ss_pred HHHHHHhCCeec--cCCcceEEEEC
Q 007463 581 KKLVQVRISIKF--PAYVFTCFRVT 603 (603)
Q Consensus 581 k~iv~~~gG~I~--~~g~Gt~f~it 603 (603)
|++++.|||+|+ ... ||+|+|+
T Consensus 189 ~~~v~~~gG~i~~~s~~-Gt~~~i~ 212 (218)
T 3ehh_A 189 RERLEFANGSLHIDTEN-GTKLTMA 212 (218)
T ss_dssp HHHHHHTTCEEEEECSS-SEEEEEE
T ss_pred HHHHHHcCCEEEEeCCC-CeEEEEE
Confidence 999999999999 444 9999974
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=5.2e-23 Score=187.81 Aligned_cols=137 Identities=7% Similarity=0.071 Sum_probs=121.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCc
Q 007463 441 RSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDR 520 (603)
Q Consensus 441 ~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~ 520 (603)
+++++.+++++++..++..+..+++.+.+++++++ .+.+|+..+.|++.||+.||+||+++ .|.|++...++.
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~--~i~i~~~~~~~~--- 74 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE--FVEISARQTDEH--- 74 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS--EEEEEEEECSSC---
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC--eEEEEEEecCCE---
Confidence 58999999999999999999999999999987764 48999999999999999999998765 777877665443
Q ss_pred cccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcc
Q 007463 521 NDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVF 597 (603)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~G 597 (603)
+.|+|.|+|+||+++..+++|++|++... ..+|+||||++||++++.|||+++ .+++|
T Consensus 75 ------------------~~i~i~D~G~gi~~~~~~~~f~~~~~~~~-~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G 135 (152)
T 1id0_A 75 ------------------LYIVVEDDGPGIPLSKREVIFDRGQRVDT-LRPGQGVGLAVAREITEQYEGKIVAGESMLGG 135 (152)
T ss_dssp ------------------EEEEEEESSSCCCGGGTTGGGSCCCCTTC-CCTTCCSCHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred ------------------EEEEEEeCCCCcCHHHHHHHhccceeccC-CCCCcccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 88999999999999999999999987554 246999999999999999999999 56789
Q ss_pred eEEEEC
Q 007463 598 TCFRVT 603 (603)
Q Consensus 598 t~f~it 603 (603)
|+|+|+
T Consensus 136 ~~~~i~ 141 (152)
T 1id0_A 136 ARMEVI 141 (152)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999874
No 15
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.90 E-value=5.3e-23 Score=187.54 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=123.7
Q ss_pred eeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCC
Q 007463 439 EIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQ 518 (603)
Q Consensus 439 ~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~ 518 (603)
+.+++++.+++++++..++..+..+++.+.+++++..+ .+.+|+..+.+++.||+.||+||+++++.|.|++...++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~-- 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT-- 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSSC-EEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSS--
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCCc-EEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCC--
Confidence 46799999999999999999999999999999886534 799999999999999999999999889999999876543
Q ss_pred CccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHH-HhCCeec--cCC
Q 007463 519 DRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQ-VRISIKF--PAY 595 (603)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~-~~gG~I~--~~g 595 (603)
.+.|.|+|+|+|++++..+++|++|++.. ..|+|+||++||++++ .|||+++ ..+
T Consensus 79 -------------------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~---~~g~GlGL~i~~~~~~~~~gg~~~~~~~~ 136 (152)
T 3a0y_A 79 -------------------KVRVSVWNSGPPIPEELKEKIFSPFFTTK---TQGTGLGLSICRKIIEDEHGGKIWTENRE 136 (152)
T ss_dssp -------------------EEEEEEEEESCCCCGGGTTGGGSTTCCCC-----CCCCSHHHHHHHHHTTTSCEEEEEEET
T ss_pred -------------------EEEEEEEeCCCCcCHHHHHhHhhhhccCC---CCCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 38999999999999999999999998643 3589999999999999 9999999 445
Q ss_pred cceEEEEC
Q 007463 596 VFTCFRVT 603 (603)
Q Consensus 596 ~Gt~f~it 603 (603)
+||+|+|+
T Consensus 137 ~g~~~~i~ 144 (152)
T 3a0y_A 137 NGVVFIFE 144 (152)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEE
Confidence 69999874
No 16
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=2.9e-23 Score=189.24 Aligned_cols=140 Identities=10% Similarity=0.021 Sum_probs=110.9
Q ss_pred ceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCC
Q 007463 438 LEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGS 517 (603)
Q Consensus 438 l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~ 517 (603)
.+.+++++.+++++++..++... +++.+.++.+. +..+.+|+..+.|++.||++||+||++++ .|.|++...++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~~~~~d~~~l~~il~nLl~NA~~~~~~~-~I~i~~~~~~~~ 77 (150)
T 1ysr_A 3 DDHVPVDITDLLDRAAHDAARIY--PDLDVSLVPSP--TCIIVGLPAGLRLAVDNAIANAVKHGGAT-LVQLSAVSSRAG 77 (150)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSCC--CCEEEECHHHHHHHHHHHHHHHHHTTCCS-EEEEEEEEETTE
T ss_pred ccccccCHHHHHHHHHHHHHHhc--cCCceEEccCC--CceEecCHHHHHHHHHHHHHHHHhcCCCc-EEEEEEEecCCE
Confidence 35679999999999999988765 45566666543 33799999999999999999999986655 888888776442
Q ss_pred CCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cC
Q 007463 518 QDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PA 594 (603)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~ 594 (603)
+.|+|.|+|+||+++..+++|++|++..+.+..|+||||++||++++.|||+++ .+
T Consensus 78 ---------------------~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 78 ---------------------VEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp ---------------------EEEEEEESSSCCCGGGHHHHHTSCC-----------CCCHHHHHHHHHTTCEEEEEECT
T ss_pred ---------------------EEEEEEECCCCCCHHHHHHHhcccccCCCCCCCCCCcCHHHHHHHHHHcCCEEEEeecC
Confidence 889999999999999999999999986555667999999999999999999999 57
Q ss_pred CcceEEEEC
Q 007463 595 YVFTCFRVT 603 (603)
Q Consensus 595 g~Gt~f~it 603 (603)
++||+|+|+
T Consensus 137 ~~G~~~~i~ 145 (150)
T 1ysr_A 137 LGGARLVLR 145 (150)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 789999874
No 17
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=1.6e-22 Score=185.87 Aligned_cols=150 Identities=16% Similarity=0.150 Sum_probs=105.7
Q ss_pred cceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCC-CcEEEEEEEeec
Q 007463 437 PLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSR-RGTVLFRVVSEN 515 (603)
Q Consensus 437 ~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~-~g~i~i~v~~~~ 515 (603)
+++.+++++.+++++++..++.. ..+++.+.++++++.+ .+.+|+..+.|++.||+.||+||+++ ++.|.|++...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC-CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC-eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 45678999999999999999887 7788999999888776 59999999999999999999999877 899999987654
Q ss_pred CCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---
Q 007463 516 GSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF--- 592 (603)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~--- 592 (603)
+... ....+..++.|+|.|+|+||+++..+++|++|++.. ..|+|+||++||++++.|||+++
T Consensus 80 ~~~~-----------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~---~~g~GlGL~i~~~~~~~~gG~l~i~s 145 (160)
T 1r62_A 80 QLTL-----------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR---EGGTGLGLSIARNLIDQHSGKIEFTS 145 (160)
T ss_dssp EEEE-----------TTEEEEEEEEEEEEEECTTC-----------------------CHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccc-----------cccccccEEEEEEEeCCCCCCHHHHHHhhCccccCC---CCCCccCHHHHHHHHHHCCCeEEEEe
Confidence 3100 000112258899999999999999999999998743 35899999999999999999999
Q ss_pred cCCcceEEEEC
Q 007463 593 PAYVFTCFRVT 603 (603)
Q Consensus 593 ~~g~Gt~f~it 603 (603)
.++ ||+|+|+
T Consensus 146 ~~~-~~~~~i~ 155 (160)
T 1r62_A 146 WPG-HTEFSVY 155 (160)
T ss_dssp ETT-EEEEEEE
T ss_pred CCC-CEEEEEE
Confidence 455 4999873
No 18
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.87 E-value=4.6e-22 Score=183.59 Aligned_cols=139 Identities=12% Similarity=0.041 Sum_probs=117.4
Q ss_pred cceeeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecC
Q 007463 437 PLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENG 516 (603)
Q Consensus 437 ~l~~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~ 516 (603)
+++.+++++.+++++++..+. .++..+.++++...+ .+.+|+..+.|++.||+.||+||+ ++.|.|++...++
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~~~-~v~~d~~~l~~il~nll~NAik~~--~~~I~i~~~~~~~ 76 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAES----GYEREIETALYPGSI-EVKMHPLSIKRAVANMVVNAARYG--NGWIKVSSGTEPN 76 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHC----SSSCCEEEECCSSCC-CEEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEEEETT
T ss_pred cccccccCHHHHHHHHHHHhh----hhcceEEEEecCCCc-eEEECHHHHHHHHHHHHHHHHhhc--CCeEEEEEEEcCC
Confidence 456789999999999998754 345566666655434 699999999999999999999987 8889999877644
Q ss_pred CCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccccccc-CCCCCCCchHHHHHHHHHHhCCeec---
Q 007463 517 SQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQVRISIKF--- 592 (603)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~--- 592 (603)
.+.|.|.|+|+||+++..+++|++|++... +...|+||||++||++++.|||+++
T Consensus 77 ---------------------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~ 135 (161)
T 1bxd_A 77 ---------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGT 135 (161)
T ss_dssp ---------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCCCCCCSCCCCTTHHHHHHHTSEEEEEE
T ss_pred ---------------------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCCCCCcccCHHHHHHHHHHcCCEEEEEE
Confidence 388999999999999999999999988543 3346999999999999999999998
Q ss_pred cCCcceEEEEC
Q 007463 593 PAYVFTCFRVT 603 (603)
Q Consensus 593 ~~g~Gt~f~it 603 (603)
.+++||+|+|+
T Consensus 136 ~~~~G~~~~i~ 146 (161)
T 1bxd_A 136 SERGGLSIRAW 146 (161)
T ss_dssp ETTTEEEEEEE
T ss_pred CCCCeEEEEEE
Confidence 56889999874
No 19
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.87 E-value=7.7e-22 Score=185.17 Aligned_cols=141 Identities=12% Similarity=0.037 Sum_probs=119.6
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCcc
Q 007463 442 SFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRN 521 (603)
Q Consensus 442 ~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~ 521 (603)
++++.+++++++..++.. ..+++.+.+++++..+ .+.+|+..|.+++.||+.||+||+++++.+.|++....+
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~----- 74 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRDL-YVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEE----- 74 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSCC-EEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETT-----
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCCc-EEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccC-----
Confidence 689999999999999988 8889999998877644 799999999999999999999999888999888865422
Q ss_pred ccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccc---cCCCCCCCchHHHHHHHHHHhCCeec---cCC
Q 007463 522 DKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRI---VNEGIEDRMSFSVCKKLVQVRISIKF---PAY 595 (603)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~---~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g 595 (603)
...+.|+|.|+|+||+++.++++|++|++.. ..+.+|+|+||++||++++.|||+++ .++
T Consensus 75 --------------~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 75 --------------EELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp --------------TTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEETT
T ss_pred --------------CCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecCC
Confidence 2248899999999999999999999998643 23346999999999999999999998 678
Q ss_pred cceEEEEC
Q 007463 596 VFTCFRVT 603 (603)
Q Consensus 596 ~Gt~f~it 603 (603)
+||+|+|+
T Consensus 141 ~Gt~~~i~ 148 (177)
T 3sl2_A 141 KGTTITFT 148 (177)
T ss_dssp TEEEEEEE
T ss_pred CCeEEEEE
Confidence 89999874
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.85 E-value=2.1e-21 Score=184.25 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=117.4
Q ss_pred eeeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecH---HHHHHHHHHHHHhhcccC------------CCC
Q 007463 440 IRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDE---RRVFQVILHMVGSLLNCN------------SRR 504 (603)
Q Consensus 440 ~~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~---~~l~qvl~NLl~NAik~~------------~~~ 504 (603)
.+++++.++++++...++..+..+++.+.++++.+. +..|+ .++.|++.||+.||+||. +++
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~ 78 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPI 78 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSS
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCc---ccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Confidence 458999999999999999999999999988887653 44455 456666999999999986 678
Q ss_pred cEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc------------------------ccccc
Q 007463 505 GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS------------------------TSVAQ 560 (603)
Q Consensus 505 g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~------------------------~~if~ 560 (603)
+.|.|++...++ .+.|+|+|+|+||+++.+ +++|+
T Consensus 79 ~~I~I~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~ 137 (189)
T 1i58_A 79 GTLILSARHEGN---------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFV 137 (189)
T ss_dssp EEEEEEEEEETT---------------------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGS
T ss_pred CeEEEEEEecCC---------------------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcC
Confidence 999999987644 399999999999999976 99999
Q ss_pred ccccccc--CCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 561 LGIRRIV--NEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 561 ~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+|++... +...|+||||++|+++++.|||+++ .+++||+|+|+
T Consensus 138 ~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~ 185 (189)
T 1i58_A 138 PGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIR 185 (189)
T ss_dssp TTCSHHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEE
T ss_pred CcccccccCCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEE
Confidence 9887432 2235899999999999999999999 67889999874
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.77 E-value=2.6e-18 Score=152.16 Aligned_cols=119 Identities=8% Similarity=-0.009 Sum_probs=94.5
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccc
Q 007463 443 FRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRND 522 (603)
Q Consensus 443 ~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~ 522 (603)
+++.+.++. +...+..+++.+.++.+.+.+.....|+..+.+++.|+++||+||++ ++.|.|++...++
T Consensus 2 v~l~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~-~~~i~i~~~~~~~------ 70 (128)
T 3ehg_A 2 IRLKDELIN----IKQILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQ-AKTCRVDIQQLWK------ 70 (128)
T ss_dssp CCHHHHHHH----HHHHHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEEEEEETT------
T ss_pred ccHHHHHHH----HHHHHHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEEEEeCC------
Confidence 345555554 44455678888888877654434567889999999999999999764 5789998877644
Q ss_pred cccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec--cCCcceEE
Q 007463 523 KKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF--PAYVFTCF 600 (603)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~--~~g~Gt~f 600 (603)
.+.++|+|+|+||+++.. .|+|+||++||++++.|||+++ ... ||+|
T Consensus 71 ---------------~~~i~V~D~G~Gi~~~~~---------------~g~GlGL~~~~~~~~~~gG~i~~~s~~-Gt~~ 119 (128)
T 3ehg_A 71 ---------------EVVITVSDDGTFKGEENS---------------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKL 119 (128)
T ss_dssp ---------------EEEEEEEESSCCCSCSSC---------------CCTTSHHHHHHHHHHHTTCEEEEECSS-SEEE
T ss_pred ---------------EEEEEEEECCcCcCcccC---------------CCCCccHHHHHHHHHHcCCEEEEEeCC-CEEE
Confidence 389999999999998864 3899999999999999999999 334 9999
Q ss_pred EEC
Q 007463 601 RVT 603 (603)
Q Consensus 601 ~it 603 (603)
+++
T Consensus 120 ~i~ 122 (128)
T 3ehg_A 120 TMA 122 (128)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.74 E-value=1e-17 Score=148.20 Aligned_cols=118 Identities=15% Similarity=0.039 Sum_probs=96.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCc
Q 007463 441 RSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDR 520 (603)
Q Consensus 441 ~~~~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~ 520 (603)
+++++.+++++++..+ ..+++.++++++.+.+.....|+..+.+++.||++||+||+ +++.|.|++...+
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~-~~~~i~i~~~~~~----- 72 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHA-AASTLTVRVKVDD----- 72 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCS-SCCEEEEEEEESS-----
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEEEEcC-----
Confidence 5788999999888776 66788888888776553344558899999999999999987 5678888886541
Q ss_pred cccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCC-c
Q 007463 521 NDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAY-V 596 (603)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g-~ 596 (603)
. +.++|.|+|+||+++. +|+||++||++++.|||+++ .++ +
T Consensus 73 ----------------~-~~i~v~D~G~gi~~~~------------------~GlGL~i~~~~~~~~gG~i~~~~~~~~~ 117 (129)
T 3zxo_A 73 ----------------D-LCIEVTDNGRGMPDEF------------------TGSGLTNLRQRAEQAGGEFTLASMPGAS 117 (129)
T ss_dssp ----------------E-EEEEEEECCCCCTTTT------------------CSHHHHHHHHHHHHTTCEEEEEECTTTC
T ss_pred ----------------C-EEEEEecCCCCCCccc------------------CCcCHHHHHHHHHHcCCEEEEeeCCCCC
Confidence 2 7899999999998764 69999999999999999998 566 7
Q ss_pred ceEEEEC
Q 007463 597 FTCFRVT 603 (603)
Q Consensus 597 Gt~f~it 603 (603)
|++|+++
T Consensus 118 G~~~~i~ 124 (129)
T 3zxo_A 118 GTVLRWS 124 (129)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 9999874
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.67 E-value=4.6e-16 Score=136.50 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=91.4
Q ss_pred eHHHHHHHHHHHHHHHHhhcCcEEEEEECCCCCceEEecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCcccc
Q 007463 444 RLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDK 523 (603)
Q Consensus 444 ~l~~li~~~~~~~~~~~~~~~i~l~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~ 523 (603)
++.+.+++++..+ ...++.++++++.+.+.....++..+.+++.|+++||+||.+ ++.|.|++...+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~-~~~i~i~~~~~~-------- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHAN-ATSLAINVSVED-------- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTT-CCEEEEEEEEEE--------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEeCC--------
Confidence 4566666666655 567788888887664433444588999999999999999765 568888886552
Q ss_pred ccccccccCCCCceEEEEEEEEcCCCCCccccccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEE
Q 007463 524 KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCF 600 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f 600 (603)
. +.++|+|+|+||+++. .|+||++||++++.|||+++ .+++||+|
T Consensus 69 -------------~-~~i~v~D~G~gi~~~~------------------~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~ 116 (124)
T 3zxq_A 69 -------------D-VRVEVVDDGVGISGDI------------------TESGLRNLRQRADDAGGEFTVENMPTGGTLL 116 (124)
T ss_dssp -------------E-EEEEEEECCCSSCGGG------------------SHHHHHHHHHHHHHHTCEEEEEECTTSSEEE
T ss_pred -------------C-EEEEEEECCCCCCccc------------------cccCHHHHHHHHHHhCCEEEEEEcCCCcEEE
Confidence 2 7899999999999875 39999999999999999998 56779999
Q ss_pred EEC
Q 007463 601 RVT 603 (603)
Q Consensus 601 ~it 603 (603)
+++
T Consensus 117 ~i~ 119 (124)
T 3zxq_A 117 RWS 119 (124)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 24
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.56 E-value=3.8e-15 Score=161.19 Aligned_cols=106 Identities=8% Similarity=0.066 Sum_probs=86.0
Q ss_pred EEec-HHHHHHHHHHHHHhhcccCCCCc---EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc
Q 007463 479 VMGD-ERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (603)
Q Consensus 479 v~~D-~~~l~qvl~NLl~NAik~~~~~g---~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (603)
+..| +.+|.|++.||++||++|+..++ .|.|++...+. +...+.|+|.|||+||+++.
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~------------------~~~~~~I~V~DnG~GI~~e~ 85 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD------------------ARQIYKVNVVDNGIGIPPQE 85 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET------------------TTTEEEEEEECCSCCCCGGG
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC------------------cCceEEEEEEECCCCCCHHH
Confidence 4455 49999999999999999988888 88888876541 11248899999999999999
Q ss_pred ccccccccccccc----CCCCCCCchHHHHHHHHHHhCCe-ec---cCCcce-EEEE
Q 007463 555 STSVAQLGIRRIV----NEGIEDRMSFSVCKKLVQVRISI-KF---PAYVFT-CFRV 602 (603)
Q Consensus 555 ~~~if~~f~~~~~----~~~~G~GLGL~i~k~iv~~~gG~-I~---~~g~Gt-~f~i 602 (603)
++++|++|++... ...+|+||||++|+.++++|||+ ++ .+++|+ +|+|
T Consensus 86 l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~ 142 (530)
T 2zbk_B 86 VPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTF 142 (530)
T ss_dssp SHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEE
T ss_pred HHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEE
Confidence 9999999965332 34579999999999999999999 87 555565 5554
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.54 E-value=7.5e-15 Score=157.12 Aligned_cols=107 Identities=7% Similarity=0.057 Sum_probs=86.9
Q ss_pred eEEecHHHHHHHHHHHHHhhcccCCCCc---EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc
Q 007463 478 HVMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (603)
Q Consensus 478 ~v~~D~~~l~qvl~NLl~NAik~~~~~g---~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (603)
.+.+|+.+|.|++.||++||++|+..++ .|.|++...+. +...+.|+|+|||+||+++.
T Consensus 25 ~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~------------------~~~~~~I~V~DnG~GI~~e~ 86 (471)
T 1mu5_A 25 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD------------------ARQIYKVNVVDNGIGIPPQE 86 (471)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET------------------TTTEEEEEEECCSCCCCGGG
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC------------------cCcEEEEEEEECCCCCCHHH
Confidence 3667889999999999999999988877 89998876531 11248899999999999999
Q ss_pred ccccccccccccc----CCCCCCCchHHHHHHHHHHhCCe-ec---cCCcce-EEEE
Q 007463 555 STSVAQLGIRRIV----NEGIEDRMSFSVCKKLVQVRISI-KF---PAYVFT-CFRV 602 (603)
Q Consensus 555 ~~~if~~f~~~~~----~~~~G~GLGL~i~k~iv~~~gG~-I~---~~g~Gt-~f~i 602 (603)
++++|++|++... ...+|+||||++|+.+++.|||+ ++ .+++|+ +|+|
T Consensus 87 l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~ 143 (471)
T 1mu5_A 87 VPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTF 143 (471)
T ss_dssp HHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEE
T ss_pred HHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEE
Confidence 9999999865332 23468999999999999999999 88 556555 5554
No 26
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.54 E-value=1e-14 Score=131.77 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=78.4
Q ss_pred EEecHHHHHHHHHHHHHhhcccCCC---CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc
Q 007463 479 VMGDERRVFQVILHMVGSLLNCNSR---RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (603)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~~---~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (603)
...|...+.+++.||+.||+||..+ ++.|.|++...++ .+.|+|+|+|+||+ .+
T Consensus 33 ~~~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~---------------------~~~i~V~D~G~g~~--~~ 89 (145)
T 1th8_A 33 TMDELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG---------------------VVHLTVRDEGVGIP--DI 89 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT---------------------EEEEEEEECSSCCS--CH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC---------------------EEEEEEEECCCCcC--hH
Confidence 3468889999999999999998766 6899999887644 38999999999999 88
Q ss_pred ccccccccccccCCCCCCCchHHHHHHHHHHhCCeec---cCCcceEEEEC
Q 007463 556 TSVAQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKF---PAYVFTCFRVT 603 (603)
Q Consensus 556 ~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~---~~g~Gt~f~it 603 (603)
+++|++|++... ...|.|+||++|+++++ +++ .+++||+|+++
T Consensus 90 ~~~~~~~~~~~~-~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~ 135 (145)
T 1th8_A 90 EEARQPLFTTKP-ELERSGMGFTIMENFMD----EVIVESEVNKGTTVYLK 135 (145)
T ss_dssp HHHTCCC--------CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEE
T ss_pred HHhhcccccCCC-CCCCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEE
Confidence 899999987543 34689999999999998 666 67889999874
No 27
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.54 E-value=1.4e-13 Score=129.28 Aligned_cols=169 Identities=13% Similarity=0.137 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCC
Q 007463 152 AWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDM 231 (603)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~ 231 (603)
..+++++.+++++++++.+.++++++.|++++|++++++.+++.+.+.+++++|.||+.+++... ...+.+..... .
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~~-~~~~~~~~~~~--~ 88 (184)
T 3p01_A 12 YDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQTLS-TIQGFYSQQGT--V 88 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEEE-EEEEEEESSSS--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCcee-eeeeeccccCc--c
Confidence 47788888889999999999999999999999999999999999999999999999999655322 22222332221 1
Q ss_pred CCceecCChhHHHHHhcCCeEEeCCCchhhhccC-CCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCC
Q 007463 232 CSSIPITDQDVVRIKGSDGVNILGPDSELAAASS-GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ 310 (603)
Q Consensus 232 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~ 310 (603)
...++ .++.+.+++.++++..+.+....+.... ......|.++.+++|+...++. +|++.+.+..
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~-------------~GvL~l~~~~ 154 (184)
T 3p01_A 89 NNWLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITYRNEM-------------LGVLSLQWQQ 154 (184)
T ss_dssp CCCGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEETTEE-------------EEEEEEEESS
T ss_pred CcccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEECCEE-------------EEEEEeCcCC
Confidence 12244 3777889999999988765433322111 1122357899999999865555 7788887777
Q ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHH
Q 007463 311 FRTWSNQELEIVKVVADQVLVALSHAA 337 (603)
Q Consensus 311 ~~~~~~~~~~ll~~~a~q~a~al~~a~ 337 (603)
++.|+++|+++++.+|+|+|+||+|++
T Consensus 155 ~~~f~~~d~~ll~~lA~q~aiAi~nAr 181 (184)
T 3p01_A 155 PISLREDELTLIHLSAQLVAIALTSSR 181 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986
No 28
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.52 E-value=3.5e-13 Score=123.91 Aligned_cols=165 Identities=13% Similarity=0.139 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHH
Q 007463 167 EAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIK 246 (603)
Q Consensus 167 ~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 246 (603)
+.++.++++++.+.++.|.+++++.+++.+.+.+++++|+||+.++++..+......+..........++..++...++.
T Consensus 5 ~~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (171)
T 3trc_A 5 NMLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGLVG 84 (171)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhHHH
Confidence 45778999999999999999999999999999999999999999998877777766554332222336788888889999
Q ss_pred hcCCeEEeCCCchhhhccC-CCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHH
Q 007463 247 GSDGVNILGPDSELAAASS-GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVV 325 (603)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~ 325 (603)
.++++..+.+......... ......+..+.+++|+...++. +|++++....++.|+++++++++.+
T Consensus 85 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~-------------~Gvl~~~~~~~~~f~~~d~~~l~~l 151 (171)
T 3trc_A 85 EREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIEQGEL-------------LGILVIQQLESHHFAEEEEAFCVTL 151 (171)
T ss_dssp HHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEETTEE-------------EEEEEEEESSSCCCCHHHHHHHHHH
T ss_pred hcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEECCEE-------------EEEEEEeecCCCCCCHHHHHHHHHH
Confidence 9999998865433222111 1123467899999999865444 7788888777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007463 326 ADQVLVALSHAAVLEESQH 344 (603)
Q Consensus 326 a~q~a~al~~a~l~ee~~~ 344 (603)
|+|++++++|+++++++++
T Consensus 152 a~~~a~ai~~a~l~~~l~~ 170 (171)
T 3trc_A 152 AIHLAAEIAHARAKGALEK 170 (171)
T ss_dssp HHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887543
No 29
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.52 E-value=2.1e-13 Score=126.52 Aligned_cols=165 Identities=13% Similarity=0.118 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEE-EecC-CCCCCCCCceecCChhHH
Q 007463 166 KEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTH-QLNG-RNYSDMCSSIPITDQDVV 243 (603)
Q Consensus 166 ~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~-~~~~-~~~~~~~~~i~~~~~~~~ 243 (603)
+++.+.++++++.|+++.|++++++.+++.+.+.+++++|+|++.++++..+.... .... .........+|..++.+.
T Consensus 2 n~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (177)
T 3k2n_A 2 NAALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLE 81 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGG
T ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHH
Confidence 45678899999999999999999999999999999999999999999887766531 1111 111222345677777888
Q ss_pred HHHhcCCeEEeCCCchhhhccCC------CcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchH
Q 007463 244 RIKGSDGVNILGPDSELAAASSG------ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQ 317 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~ 317 (603)
+++.++++.+++........... .....|.++.+++||...++. +|++++....++.|+++
T Consensus 82 ~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~-------------iGvL~l~~~~~~~f~~~ 148 (177)
T 3k2n_A 82 GHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRV-------------IGFLSFVSAEEKLWSDG 148 (177)
T ss_dssp GGTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEE-------------EEEEEEEESSCCCCCHH
T ss_pred HHhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEE-------------EEEEEEEECCCCCCCHH
Confidence 99999999887333211111111 123457889999999865544 78888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 318 ELEIVKVVADQVLVALSHAAVLEESQ 343 (603)
Q Consensus 318 ~~~ll~~~a~q~a~al~~a~l~ee~~ 343 (603)
++++++.+|+|+|+|++|++++++.+
T Consensus 149 d~~ll~~lA~~~a~Ai~na~l~~~l~ 174 (177)
T 3k2n_A 149 DKSLLSGVSSSIAIAVSNALAYEELR 174 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 30
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.48 E-value=3.1e-13 Score=125.65 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=106.2
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC-h-hHHHHHhcCCe
Q 007463 174 MLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-Q-DVVRIKGSDGV 251 (603)
Q Consensus 174 ~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~-~~~~~~~~~~~ 251 (603)
|.+.+|++++|+++|++++++++.+.+++|||.||.+++++..........++..+..+..+|..+ | ...+....+++
T Consensus 1 ~~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 1 MAAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred ChHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 357789999999999999999999999999999999998876544444444443333344454432 2 24566777888
Q ss_pred EEeCCCchhhhc--cCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecC-CCCcCCchHHHHHHHHHHHH
Q 007463 252 NILGPDSELAAA--SSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPN-EQFRTWSNQELEIVKVVADQ 328 (603)
Q Consensus 252 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~-~~~~~~~~~~~~ll~~~a~q 328 (603)
..+.+....... ........|.++.+.+|++..++. +|+++... ..+|.|+++|+++++.+|+|
T Consensus 81 ~~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vPi~~~~~l-------------~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 81 QATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDDQL-------------FGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EEESCGGGTTCCHHHHHHHGGGTEEEEEEEEEEETTEE-------------EEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEEcCcCcCCCCHHHHHHHHhcCCcEEEEEEEEECCEE-------------EEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 777654332111 111234678999999999977776 44555544 78999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007463 329 VLVALSHAAVLEES 342 (603)
Q Consensus 329 ~a~al~~a~l~ee~ 342 (603)
+++||++++++++.
T Consensus 148 l~iAi~qa~l~~~~ 161 (171)
T 4glq_A 148 GSLVLERLHFLEQT 161 (171)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998773
No 31
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.47 E-value=3.5e-13 Score=126.30 Aligned_cols=171 Identities=12% Similarity=0.090 Sum_probs=126.5
Q ss_pred HHHhHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEE-EecC--CC----CCCCCC
Q 007463 162 IMKQKEAGVHVRMLTQEIRKSL-DRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTH-QLNG--RN----YSDMCS 233 (603)
Q Consensus 162 ~~~~~~~~~~l~~lt~~i~~~~-d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~-~~~~--~~----~~~~~~ 233 (603)
++++.++.+.++++++.+.++. |++++++.+++.+.+.+++++|+|+++++++..+.... ..+. .. ......
T Consensus 5 l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T 2e4s_A 5 SSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEI 84 (189)
T ss_dssp ---CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCCC
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcce
Confidence 4667788888999999998885 99999999999999999999999999998876665432 1111 00 011335
Q ss_pred ceecCChhHHHHHhcCCeEEeCCCchhhhccC--CCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCC
Q 007463 234 SIPITDQDVVRIKGSDGVNILGPDSELAAASS--GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQF 311 (603)
Q Consensus 234 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~ 311 (603)
.+|.+++.+++++.++++..+.+......... ......+..+.+++||...++. +|++++.+..+
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~-------------iGvl~l~~~~~ 151 (189)
T 2e4s_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSV-------------IGVVQMVNKIS 151 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEE-------------EEEEEEEEETT
T ss_pred EeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEEeccCCeE-------------EEEEEEEeCCC
Confidence 67888888999999999998865433221110 0112356789999999855544 77888877665
Q ss_pred c-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 312 R-TWSNQELEIVKVVADQVLVALSHAAVLEESQHM 345 (603)
Q Consensus 312 ~-~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~ 345 (603)
+ .|+++++++++.+|+|+|+||+|++++++.++.
T Consensus 152 ~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~ 186 (189)
T 2e4s_A 152 GSAFSKTDENNFKMFAVFCALALHCANMYHRIRHS 186 (189)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999999999999999875543
No 32
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.46 E-value=7.5e-13 Score=123.79 Aligned_cols=166 Identities=12% Similarity=0.067 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCC-------CCCCCcee
Q 007463 165 QKEAGVHVRMLTQEI-RKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY-------SDMCSSIP 236 (603)
Q Consensus 165 ~~~~~~~l~~lt~~i-~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~-------~~~~~~i~ 236 (603)
+.+..+.|.++++.+ ++++|++++++.+++.+.+.+++++|+||+.|+++..+........... ......+|
T Consensus 8 ~~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (189)
T 2zmf_A 8 QTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFS 87 (189)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccC
Confidence 344556688888876 5668999999999999999999999999999998877665433221111 11224567
Q ss_pred cCChhHHHHHhcCCeEEeCCCchhhhccC--CCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEec-CCCCcC
Q 007463 237 ITDQDVVRIKGSDGVNILGPDSELAAASS--GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLP-NEQFRT 313 (603)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~-~~~~~~ 313 (603)
.+.+..++++.++++..+.+......... ......+.++.+++|+...++. +|++.+. ...++.
T Consensus 88 ~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~-------------~Gvl~l~~~~~~~~ 154 (189)
T 2zmf_A 88 IEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSV-------------IGVVQMVNKISGSA 154 (189)
T ss_dssp TTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEE-------------EEEEEEEEETTSSS
T ss_pred CCccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecccCce-------------eeEEEEEEcCCCCC
Confidence 77888899999999998865443222111 1112346788999999865554 6676554 456789
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 314 WSNQELEIVKVVADQVLVALSHAAVLEESQ 343 (603)
Q Consensus 314 ~~~~~~~ll~~~a~q~a~al~~a~l~ee~~ 343 (603)
|+++|+++++.+|+|+|+||+|++++++++
T Consensus 155 f~~~d~~ll~~lA~q~a~Ai~na~l~~~lr 184 (189)
T 2zmf_A 155 FSKTDENNFKMFAVFCALALHCANMYHRIR 184 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998744
No 33
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.45 E-value=2.1e-12 Score=117.96 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=127.6
Q ss_pred HhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHH
Q 007463 164 KQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVV 243 (603)
Q Consensus 164 ~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 243 (603)
+++++...++++++.+.++.|.+++++.+++.+.+.++++.|+||+.+++...+......+..........++..++.+.
T Consensus 4 ~~~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3ci6_A 4 MSNMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVG 83 (171)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeeh
Confidence 45677888999999999999999999999999999999999999999988777777666654432222346777788888
Q ss_pred HHHhcCCeEEeCCCchhhhccCC-CcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHH
Q 007463 244 RIKGSDGVNILGPDSELAAASSG-ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIV 322 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll 322 (603)
++..++++..+.+.......... .....+..+.+++|+...++. +|++++....++.|++++++++
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~-------------~Gvl~l~~~~~~~f~~~~~~~l 150 (171)
T 3ci6_A 84 LVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVMYRRKV-------------MGVLVVQNKQPQDFSEAAESFL 150 (171)
T ss_dssp HHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEEETTEE-------------EEEEEEEESSCCCCCHHHHHHH
T ss_pred hhhccCceEEecCCCcCcchhccccccccccceEEEEeEEECCEE-------------EEEEEEecCCCCCCCHHHHHHH
Confidence 99999998888643332221111 113456789999999855444 7788887777789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007463 323 KVVADQVLVALSHAAVLEE 341 (603)
Q Consensus 323 ~~~a~q~a~al~~a~l~ee 341 (603)
+.++++++.+++|++++++
T Consensus 151 ~~la~~~a~al~~~~l~~~ 169 (171)
T 3ci6_A 151 VTLCAQLSGVIAHAHAVGN 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998875
No 34
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.43 E-value=3.6e-12 Score=116.76 Aligned_cols=159 Identities=15% Similarity=0.243 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceec--CChhHHHHHh
Q 007463 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPI--TDQDVVRIKG 247 (603)
Q Consensus 170 ~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~ 247 (603)
+.++++++.+.++.|.+++++.+++.+.+.+++++|++++.++++..+......+..........++. ..+.+.+++.
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 45788999999999999999999999999999999999999998888887776664432223445666 4677889999
Q ss_pred cCCeEEeCCCchhhhcc-----CCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCC-cCCchHHHHH
Q 007463 248 SDGVNILGPDSELAAAS-----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQF-RTWSNQELEI 321 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~-~~~~~~~~~l 321 (603)
++++..+.+........ .......+..+.+++|+...++. +|++++....+ +.|+++++++
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~-------------iGvl~~~~~~~~~~f~~~d~~~ 148 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEA-------------IGVFAVDNRSSRRSLNDTDVDT 148 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEE-------------EEEEEEECTTSSSCCCHHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcE-------------EEEEEEEccccCCCCCHHHHHH
Confidence 99998886544332211 11223467889999999855444 78888887654 4599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007463 322 VKVVADQVLVALSHAAVLEE 341 (603)
Q Consensus 322 l~~~a~q~a~al~~a~l~ee 341 (603)
++.+++|++++++|++++++
T Consensus 149 l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 149 IKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998864
No 35
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.41 E-value=1e-12 Score=121.73 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=122.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCCh
Q 007463 161 IIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ 240 (603)
Q Consensus 161 ~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 240 (603)
.+++++++...++++++.+.++.|.+++++.+++.+.+.+++++|+||+.++++..+...+++..... ....++.+++
T Consensus 6 ~~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~--~~~~~~~~~~ 83 (181)
T 3e0y_A 6 RANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFI--GKIRIKIGDG 83 (181)
T ss_dssp -----CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGT--TTCEEETTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHh--ccccccCCCC
Confidence 34566667778999999999999999999999999999999999999999988664443333332221 2346777778
Q ss_pred hHHHHHhcCCeEEeCCCchhhhcc-CCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHH
Q 007463 241 DVVRIKGSDGVNILGPDSELAAAS-SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQEL 319 (603)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~ 319 (603)
.+.+++.++++..+.+........ .......+..+.+++||...++. +|++++....++.|+++++
T Consensus 84 ~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~-------------iGvl~~~~~~~~~f~~~~~ 150 (181)
T 3e0y_A 84 ITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEV-------------YGVINLNTTSIRSFHEDEI 150 (181)
T ss_dssp SHHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEECSSCE-------------EEEEEEEESSCCCCCHHHH
T ss_pred eeeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEeCCeE-------------EEEEEEeeCCCCCCCHHHH
Confidence 889999999988874322211111 11122457899999999865444 7788887777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007463 320 EIVKVVADQVLVALSHAAVLEES 342 (603)
Q Consensus 320 ~ll~~~a~q~a~al~~a~l~ee~ 342 (603)
++++.+|++++.++++++++++.
T Consensus 151 ~~l~~la~~~a~al~~~~~~~~~ 173 (181)
T 3e0y_A 151 YFVSIIANLILTAIKLRQQVASS 173 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987763
No 36
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.39 E-value=2.3e-12 Score=119.00 Aligned_cols=158 Identities=11% Similarity=0.137 Sum_probs=106.7
Q ss_pred hccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCC-CCCCCceecCChhHHHHHhcCCeEEeCCCch
Q 007463 181 KSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY-SDMCSSIPITDQDVVRIKGSDGVNILGPDSE 259 (603)
Q Consensus 181 ~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 259 (603)
..++++++++.+++.+.+.++++++++++++++ .+.+....+.... ...+..+|...+.+..+.+++++.+.+....
T Consensus 2 ~~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~--~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~ 79 (165)
T 3o5y_A 2 NAMSLDDIINNMIDKLKLLVHFDRISFLLLANE--TLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDT 79 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCSEEEEEEEETT--EEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCT
T ss_pred CCCCHHHHHHHHHHHHHHhcCcceEEEEEEECC--EEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCccc
Confidence 357899999999999999999999999999876 4555444433321 1234567777778899999999988743222
Q ss_pred h-hhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007463 260 L-AAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAV 338 (603)
Q Consensus 260 ~-~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l 338 (603)
. ...........+.++.+++||...++. +|++.+.+..++.|+++++++++.+|+|+|++++||++
T Consensus 80 ~~~~~~~~~~~~~~~~S~l~vPL~~~~~~-------------iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~l 146 (165)
T 3o5y_A 80 QDNFYEKQYLAILDLKSILVIPIYSKNKR-------------VGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVEL 146 (165)
T ss_dssp TCCCTTHHHHHTTTCCEEEEEEEECSSCE-------------EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ccccccchHHHhhCCCEEEEeCeeECCEE-------------EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111123467899999999966655 78888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007463 339 LEESQHMREKLEEQN 353 (603)
Q Consensus 339 ~ee~~~~~~~L~~~~ 353 (603)
|++.++.++++++.-
T Consensus 147 y~~~~~~~~~~~~~~ 161 (165)
T 3o5y_A 147 YGQVLRSKQEWEDTF 161 (165)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887777766653
No 37
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.34 E-value=2.5e-13 Score=148.90 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=84.1
Q ss_pred eEEecHHHHHHHHHHHHHhhcccCCCCc---EEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc
Q 007463 478 HVMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (603)
Q Consensus 478 ~v~~D~~~l~qvl~NLl~NAik~~~~~g---~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (603)
.+.+|+..+.|++.||++||++|...+| .|.|++...+. .++.|+|+|||+|||++.
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~--------------------~~~~I~V~DnG~GIp~e~ 89 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGP--------------------DYVTVIIEDNGPGIVREQ 89 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETT--------------------TEEEEEEECCSCCCCGGG
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCC--------------------cEEEEEEEECCCCCCHHH
Confidence 3678999999999999999999887667 88888866531 138899999999999999
Q ss_pred ccccccccccc-----ccCCCCCCCchHHHHHHHHHHhCCe-ec---cCC---cceEEEE
Q 007463 555 STSVAQLGIRR-----IVNEGIEDRMSFSVCKKLVQVRISI-KF---PAY---VFTCFRV 602 (603)
Q Consensus 555 ~~~if~~f~~~-----~~~~~~G~GLGL~i~k~iv~~~gG~-I~---~~g---~Gt~f~i 602 (603)
++++|++|+.+ .....+|+|+||++|+.+++.|||+ |+ ..+ .|++|++
T Consensus 90 l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~ 149 (621)
T 2q2e_B 90 IPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYEL 149 (621)
T ss_dssp HHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEEC
T ss_pred HHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEE
Confidence 99999776321 1133478999999999999999999 44 333 4777775
No 38
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.30 E-value=1.5e-11 Score=117.70 Aligned_cols=168 Identities=20% Similarity=0.250 Sum_probs=93.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCC-CCCCCCCceecCC
Q 007463 161 IIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGR-NYSDMCSSIPITD 239 (603)
Q Consensus 161 ~~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~-~~~~~~~~i~~~~ 239 (603)
.++++.++.+.++++++.|+++.|++++++++++.+.+.+++++|.||++++++...........+ .....+..+|..+
T Consensus 7 aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 86 (208)
T 2lb5_A 7 AAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGD 86 (208)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGG
T ss_pred HHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhh
Confidence 456667778889999999999999999999999999999999999999999876544443333321 1112233344332
Q ss_pred -h-hHHHHHhcCCeEEeCC------------------------Cchhhh--ccCCCcccCCceeEEEecceeccccCCCc
Q 007463 240 -Q-DVVRIKGSDGVNILGP------------------------DSELAA--ASSGESVESGPVAAIRMPMLRVSNFKGGT 291 (603)
Q Consensus 240 -~-~~~~~~~~~~~~~~~~------------------------~~~~~~--~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~ 291 (603)
| ........+....+.+ ...... .........|.++.+++|+...++.
T Consensus 87 ~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~~l---- 162 (208)
T 2lb5_A 87 IPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQEL---- 162 (208)
T ss_dssp CCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETTEE----
T ss_pred CcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECCEe----
Confidence 1 1222232222222211 000000 0000112457899999999976666
Q ss_pred chhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 292 PELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEE 341 (603)
Q Consensus 292 p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee 341 (603)
+|++.+....++.|+++|+++++.+|+|+|+|++++++++.
T Consensus 163 ---------~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 163 ---------WGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp ---------EEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---------EEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777788999999999999999999999999998754
No 39
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.28 E-value=6.9e-11 Score=107.11 Aligned_cols=136 Identities=19% Similarity=0.165 Sum_probs=107.1
Q ss_pred chhhHHHHHHHHHHhhhCCceEEEEeEcCCC----CeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCch
Q 007463 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEIK----TEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSE 259 (603)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~----~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 259 (603)
|++++++.+++.+.+.++++.|+|++++++. ..+......+.......+..++.+.+.+++++.++++..+++...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 5678999999999999999999999998764 556655444433322234577888888999999999998865442
Q ss_pred hhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCC-CCcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007463 260 LAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAV 338 (603)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~-~~~~~~~~~~~ll~~~a~q~a~al~~a~l 338 (603)
.+ +.++.+++||...++. +|++.+.+. .++.|+++++++++.+|+|+|++++++++
T Consensus 81 d~----------~~~s~l~vPL~~~~~~-------------~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a~~ 137 (149)
T 2vjw_A 81 PG----------LGGPALVLPLRATDTV-------------AGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLASS 137 (149)
T ss_dssp TS----------CEEEEEEEEEEETTEE-------------EEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC----------CCCeEEEEEEccCCeE-------------EEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 6789999999865444 788888776 78899999999999999999999999998
Q ss_pred HHHH
Q 007463 339 LEES 342 (603)
Q Consensus 339 ~ee~ 342 (603)
+++.
T Consensus 138 ~~~~ 141 (149)
T 2vjw_A 138 QRRM 141 (149)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7663
No 40
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.20 E-value=9.6e-10 Score=114.50 Aligned_cols=167 Identities=12% Similarity=0.078 Sum_probs=123.0
Q ss_pred HHhHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecC-CCCCCCCCceecCCh
Q 007463 163 MKQKEAGVHVRMLTQEIRKS-LDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNG-RNYSDMCSSIPITDQ 240 (603)
Q Consensus 163 ~~~~~~~~~l~~lt~~i~~~-~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~-~~~~~~~~~i~~~~~ 240 (603)
++++++.+.+.++++.+.++ .|.+++++.+++.+.+.+++++|+|++.+++ .+......+. .........+|.+.+
T Consensus 174 ~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~--~l~~~~~~g~~~~~~~~~~~~~~~~~ 251 (368)
T 1mc0_A 174 QKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQG 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSS--SEEEEEETTEECCCSTTCCEECTTSH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCC--ceEEEEeccccccccccceeecCCCc
Confidence 34556677899999999999 6999999999999999999999999999883 4444333321 111123356777788
Q ss_pred hHHHHHhcCCeEEeCCCchhhhccCCCcc--cCCceeEEEecceec-cccCCCcchhhhhcceeeEEEecCCCCc-CCch
Q 007463 241 DVVRIKGSDGVNILGPDSELAAASSGESV--ESGPVAAIRMPMLRV-SNFKGGTPELVSACYAILVLVLPNEQFR-TWSN 316 (603)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~Pl~~~-~~~~g~~p~~~~~~~~i~vl~l~~~~~~-~~~~ 316 (603)
.+.++..++++..+.+....+........ ....++.+++||... ++. +|++.+....++ .|++
T Consensus 252 ~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~-------------iGvl~l~~~~~~~~f~~ 318 (368)
T 1mc0_A 252 IAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEV-------------IGVAELVNKINGPWFSK 318 (368)
T ss_dssp HHHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECTTSCE-------------EEEEEEEEETTSSSCCH
T ss_pred eeeeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEeeECCCCcE-------------EEEEEEEECCCCCCCCH
Confidence 88999999999888654332221111000 123489999999853 444 778887766554 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 317 QELEIVKVVADQVLVALSHAAVLEESQH 344 (603)
Q Consensus 317 ~~~~ll~~~a~q~a~al~~a~l~ee~~~ 344 (603)
+++++++.+|+|+|+||+|++++++.++
T Consensus 319 ~d~~ll~~la~~~a~ai~na~l~~~~~~ 346 (368)
T 1mc0_A 319 FDEDLATAFSIYCGISIAHSLLYKKVNE 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988554
No 41
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.18 E-value=1.6e-10 Score=107.37 Aligned_cols=159 Identities=11% Similarity=0.073 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCC-CCCCceecCChhHHHHHhc
Q 007463 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYS-DMCSSIPITDQDVVRIKGS 248 (603)
Q Consensus 170 ~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~ 248 (603)
..++++++.|.++.|++++++.+++.+.+.++++.|+|++.+++ ..+.+....+..... ......+..++.+++++.+
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~-~~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEK-GVLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLS 81 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTT-SCEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHH
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCC-CCEEEEEEeCCCcceecccccccCCCCchhhhhhc
Confidence 45788999999999999999999999999999999999998543 345444333322211 1112233345678889999
Q ss_pred CCeEEeCCCchhhhc-cCCCcccCCceeEEEecceeccc-cCCCcchhhhhcceeeEEEecC-CCCcCCchHHHHHHHHH
Q 007463 249 DGVNILGPDSELAAA-SSGESVESGPVAAIRMPMLRVSN-FKGGTPELVSACYAILVLVLPN-EQFRTWSNQELEIVKVV 325 (603)
Q Consensus 249 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~Pl~~~~~-~~g~~p~~~~~~~~i~vl~l~~-~~~~~~~~~~~~ll~~~ 325 (603)
+++.++.+......+ ........|..+.+++||...++ . +|++++.+ ..++.|+++++++++.+
T Consensus 82 ~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~~-------------~GvL~l~~~~~~~~f~~~d~~lL~~l 148 (181)
T 2qyb_A 82 NRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGEPP-------------FGILSVFSRTIVGLFNEPFLNLLESL 148 (181)
T ss_dssp TSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEEECCTTSCC-------------CEEEEEEESSCSSCCCHHHHHHHHHH
T ss_pred CCCEEecChhcCCchhhHHHHHhcCcceEEEEEEEeCCCeE-------------EEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 998887554322210 00011234688999999986555 4 67888877 77889999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007463 326 ADQVLVALSHAAVLEES 342 (603)
Q Consensus 326 a~q~a~al~~a~l~ee~ 342 (603)
|+|++++|++++.+++.
T Consensus 149 a~~~a~al~~a~~~~~~ 165 (181)
T 2qyb_A 149 AGQLAQAVKIVTEMEAK 165 (181)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999765553
No 42
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=99.17 E-value=1.8e-10 Score=103.38 Aligned_cols=148 Identities=10% Similarity=-0.000 Sum_probs=108.0
Q ss_pred hccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCC-CceecCChhHHHHHhcCCeEEeCCCch
Q 007463 181 KSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMC-SSIPITDQDVVRIKGSDGVNILGPDSE 259 (603)
Q Consensus 181 ~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 259 (603)
++.|++++++.+++.+.+.+++++|+|++.+++ ..+......+........ ..++..++.+.++..++++..+.+...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 467899999999999999999999999999954 455554444322110011 245666778889999999988865433
Q ss_pred hhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCC-cCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007463 260 LAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQF-RTWSNQELEIVKVVADQVLVALSHAAV 338 (603)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~-~~~~~~~~~ll~~~a~q~a~al~~a~l 338 (603)
............+..+.+++|+...++. +|++++....+ +.|+++++++++.++++++.+++|+++
T Consensus 82 ~~~~~~~~~~~~~~~s~l~vPl~~~~~~-------------~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a~l 148 (153)
T 2w3g_A 82 HPASIGFPPYHPPMRTFLGVPVRVRDES-------------FGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANARL 148 (153)
T ss_dssp STTCCCCCTTCCCCCCEEEEEEEETTEE-------------EEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCCcCCCCCeEEEeeEEECCEE-------------EEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222123467889999999855544 77888877766 799999999999999999999999998
Q ss_pred HHHH
Q 007463 339 LEES 342 (603)
Q Consensus 339 ~ee~ 342 (603)
+++.
T Consensus 149 ~~~~ 152 (153)
T 2w3g_A 149 YQQA 152 (153)
T ss_dssp HC--
T ss_pred HHhc
Confidence 8763
No 43
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.16 E-value=5.2e-10 Score=118.03 Aligned_cols=168 Identities=14% Similarity=0.162 Sum_probs=125.1
Q ss_pred HHhHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChh
Q 007463 163 MKQKEAGVHVRMLTQEIRK-SLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQD 241 (603)
Q Consensus 163 ~~~~~~~~~l~~lt~~i~~-~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 241 (603)
+++.++.+.+.++++.+.. ..|.+++++.+++.+.+.+++++|.||+.+++...+.......+.. .....+|.+.+.
T Consensus 192 ~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~--~~~~~~~~~~~~ 269 (398)
T 1ykd_A 192 TQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGS--TKELRVPIGKGF 269 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSC--EEEEEEETTSHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCc--eeeeeccCCCch
Confidence 3455667778899999999 9999999999999999999999999999999877776655432221 123456777888
Q ss_pred HHHHHhcCCeEEeC-CCchhhhccCC----CcccCCceeEEEeccee-ccccCCCcchhhhhcceeeEEEecCCC-----
Q 007463 242 VVRIKGSDGVNILG-PDSELAAASSG----ESVESGPVAAIRMPMLR-VSNFKGGTPELVSACYAILVLVLPNEQ----- 310 (603)
Q Consensus 242 ~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~l~~Pl~~-~~~~~g~~p~~~~~~~~i~vl~l~~~~----- 310 (603)
.+++..++++..+. +.......... .....+.++.+++||.. .++. +|++.+.+..
T Consensus 270 ~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~-------------iGvl~l~~~~~~~~~ 336 (398)
T 1ykd_A 270 AGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQEL-------------IGVTQLVNKKKTGEF 336 (398)
T ss_dssp HHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCE-------------EEEEEEEEECCSSCC
T ss_pred hhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCE-------------EEEEEEEecCCcccc
Confidence 89999999998887 43322111000 00123468899999983 4444 6677776655
Q ss_pred ---------------CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 311 ---------------FRTWSNQELEIVKVVADQVLVALSHAAVLEESQHM 345 (603)
Q Consensus 311 ---------------~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~ 345 (603)
++.|+++++++++.+|+|+|+||+|++++++.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~ 386 (398)
T 1ykd_A 337 PPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQ 386 (398)
T ss_dssp CCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999885543
No 44
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.15 E-value=1.7e-09 Score=122.70 Aligned_cols=174 Identities=11% Similarity=0.063 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCC-CCCCCCceecCChhH
Q 007463 165 QKEAGVHVRMLTQEIRK-SLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRN-YSDMCSSIPITDQDV 242 (603)
Q Consensus 165 ~~~~~~~l~~lt~~i~~-~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~-~~~~~~~i~~~~~~~ 242 (603)
+.++.+.+.++++.+.+ ..|.+++++.+++.+.+.+++++|+|++.+++ .+......+... .......+|.+.+..
T Consensus 176 ~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~~--~l~~~~~~g~~~~~~~~~~~~~~~~gi~ 253 (691)
T 3ibj_A 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGIA 253 (691)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECSS--EEEEECCSSSCCSSCCCEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeCC--eEEEEeecCCcccccccceeccCCCCHH
Confidence 34667789999999999 79999999999999999999999999999883 343332222211 112234678888889
Q ss_pred HHHHhcCCeEEeCCCchhhhccC--CCcccCCceeEEEecceec-cccCCCcchhhhhcceeeEEEecCCCCc-CCchHH
Q 007463 243 VRIKGSDGVNILGPDSELAAASS--GESVESGPVAAIRMPMLRV-SNFKGGTPELVSACYAILVLVLPNEQFR-TWSNQE 318 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~Pl~~~-~~~~g~~p~~~~~~~~i~vl~l~~~~~~-~~~~~~ 318 (603)
+++..++++..+.+....+.... ......+.++.+++||... ++. +|++.+.+..++ .|+++|
T Consensus 254 g~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~g~v-------------iGVL~l~~~~~~~~f~~~d 320 (691)
T 3ibj_A 254 GHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEV-------------IGVAELVNKINGPWFSKFD 320 (691)
T ss_dssp HHHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEECCCSSSCC-------------CEEEEEEEESSSSSCCTTT
T ss_pred HHHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEeEECCCCCE-------------EEEEEEEECCCCCCCCHHH
Confidence 99999999998865443322111 1111245789999999855 344 678787766554 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 319 LEIVKVVADQVLVALSHAAVLEESQHMREKLEEQN 353 (603)
Q Consensus 319 ~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~~~~ 353 (603)
+++++.+|+|+|+||+|++++++.++..++.+..+
T Consensus 321 ~~ll~~lA~~~aiAIena~l~~~l~~~~~~~~~~~ 355 (691)
T 3ibj_A 321 EDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLAN 355 (691)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877666544433
No 45
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.11 E-value=3.6e-10 Score=105.72 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhCCceEEEEeEcCCCC--eeEEE-EEecCCC-------CCCCCCce
Q 007463 167 EAGVHVRMLTQEIRKSL-DRHTILYTTLVELSNTLGLQNCAVWMPNEIKT--EMNLT-HQLNGRN-------YSDMCSSI 235 (603)
Q Consensus 167 ~~~~~l~~lt~~i~~~~-d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~--~l~~~-~~~~~~~-------~~~~~~~i 235 (603)
++.+.++++++.|++++ |++++++.+++.+.+.+++++|+|+++++++. .+... .....+. .......+
T Consensus 4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 45678999999999999 99999999999999999999999999988654 33322 1111111 01123467
Q ss_pred ecCChhHHHHHhcCCeEEeCCCchhhhccCC--CcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCc-
Q 007463 236 PITDQDVVRIKGSDGVNILGPDSELAAASSG--ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFR- 312 (603)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~- 312 (603)
|.+++.++++..++++..+++....+..... .......++.+++||...++. +|++.+.+....
T Consensus 84 ~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~~~v-------------iGVL~l~n~~~~~ 150 (180)
T 3dba_A 84 PLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEV-------------LAVVMALNKLNAS 150 (180)
T ss_dssp CTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEETTEE-------------EEEEEEEEESSSS
T ss_pred eCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEeccCCEE-------------EEEEEEEeCCCCC
Confidence 8888899999999999998654433221110 001234689999999865544 888888777654
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 007463 313 TWSNQELEIVKVVADQVLVALS 334 (603)
Q Consensus 313 ~~~~~~~~ll~~~a~q~a~al~ 334 (603)
.|++++.++++.+|+|+|++|.
T Consensus 151 ~Ft~~d~~lL~~lA~~aa~~i~ 172 (180)
T 3dba_A 151 EFSKEDEEVFKKYLNFISLVLR 172 (180)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999984
No 46
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=99.10 E-value=6.8e-09 Score=95.48 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHH
Q 007463 166 KEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRI 245 (603)
Q Consensus 166 ~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 245 (603)
+.-...+.++++-+..+.|+++.++.++..+.+.+++++|.||+.|+++..+.+....+.. ....++.+++.++++
T Consensus 13 ~~~~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~~----~~~~i~~geGi~G~v 88 (167)
T 3mmh_A 13 ALYREVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGPL----ACTRIPFGRGVCGQA 88 (167)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESSC----CCSEEETTSHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEecccc----cceEeccCCChHHHH
Confidence 3345567788888889999999999999999999999999999999887777776555432 235889999999999
Q ss_pred HhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHH
Q 007463 246 KGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVV 325 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~ 325 (603)
..++++.++++....+... ....+.++.+++|+...++. +||+.+.+..++.|+++|.++++.+
T Consensus 89 ~~~g~~~~v~Dv~~~p~~~---~~~~~~~S~i~vPi~~~g~v-------------iGVL~i~s~~~~~F~~~d~~~L~~l 152 (167)
T 3mmh_A 89 WAKGGTVVVGDVDAHPDHI---ACSSLSRSEIVVPLFSDGRC-------------IGVLDADSEHLAQFDETDALYLGEL 152 (167)
T ss_dssp HHHTSCEEESCGGGSTTCC---CSSTTCCEEEEEEEEETTEE-------------EEEEEEEESSTTCCCHHHHHHHHHH
T ss_pred HhCCcEEEECCcccCcchh---hcCccCCeEEEEEeccCCEE-------------EEEEEEecCCCCCCCHHHHHHHHHH
Confidence 9999999987654433211 11356789999999854444 8899988888899999999999999
Q ss_pred HHHHHHHHHH
Q 007463 326 ADQVLVALSH 335 (603)
Q Consensus 326 a~q~a~al~~ 335 (603)
|++++.++.+
T Consensus 153 A~~la~~i~~ 162 (167)
T 3mmh_A 153 AKILEKRFEA 162 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 47
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.08 E-value=1.2e-09 Score=113.83 Aligned_cols=166 Identities=10% Similarity=0.094 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHH
Q 007463 167 EAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIK 246 (603)
Q Consensus 167 ~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 246 (603)
+..+.+.++++.| +++|++++++.+++.+.+.+++++|+||+.++++..+......+... .....+|.+.+.++++.
T Consensus 11 ~~~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~--~~~~~~~~~~g~~g~~~ 87 (368)
T 1mc0_A 11 DHDRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVL--GEEVSFPLTMGRLGQVV 87 (368)
T ss_dssp HHHHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEE--EEEEEEESSSSSHHHHH
T ss_pred cchHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCcc--ccceeeccccCHHHHHH
Confidence 3456688899999 88999999999999999999999999999998877665544322110 11235677778889999
Q ss_pred hcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCC-CcCCchHHHHHHHHH
Q 007463 247 GSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ-FRTWSNQELEIVKVV 325 (603)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~-~~~~~~~~~~ll~~~ 325 (603)
.++++..+.+......+........+.++.+++|+...+ .+..+|++++.... .+.|++++.++++.+
T Consensus 88 ~~~~~~~i~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~-----------~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~l 156 (368)
T 1mc0_A 88 EDKQCIQLKDLTSDDVQQLQNMLGCELQAMLCVPVISRA-----------TDQVVALACAFNKLGGDFFTDEDEHVIQHC 156 (368)
T ss_dssp HHCCCEEGGGSCHHHHHHHHHHHCSCCCCEEEEEEECTT-----------TCSEEEEEEEEEESSCSSCCSHHHHHHHHH
T ss_pred hcCCeEEecccccccccccccccCcccceEEEEEeecCC-----------CCcEEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 999999886554333211111113457899999998540 12347787765544 456999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007463 326 ADQVLVALSHAAVLEESQHMR 346 (603)
Q Consensus 326 a~q~a~al~~a~l~ee~~~~~ 346 (603)
+.+++.++++++++++.++.+
T Consensus 157 a~~~~~al~~~~l~~~~~~~~ 177 (368)
T 1mc0_A 157 FHYTGTVLTSTLAFQKEQKLK 177 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887755433
No 48
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=99.07 E-value=2.2e-09 Score=109.41 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC-hh-HHH
Q 007463 167 EAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-QD-VVR 244 (603)
Q Consensus 167 ~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~-~~~ 244 (603)
+..+.++.++++|++++|+++|++++++++.+.+|+|||.||-+++++.+-.......++..+-.+..+|..+ |. ...
T Consensus 144 ~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ 223 (337)
T 2ool_A 144 EFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRA 223 (337)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHH
Confidence 4566788999999999999999999999999999999999999999987666555555554444455555542 32 333
Q ss_pred HHhcCCeEEeCCCchhh------------hcc--------C-C-----CcccCCceeEEEecceeccccCCCcchhhhhc
Q 007463 245 IKGSDGVNILGPDSELA------------AAS--------S-G-----ESVESGPVAAIRMPMLRVSNFKGGTPELVSAC 298 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~------------~~~--------~-~-----~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~ 298 (603)
....+....+.+..... .+- + . .....|.++.+.+|++..++.||
T Consensus 224 ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~~~LWG--------- 294 (337)
T 2ool_A 224 LYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRDNRLWG--------- 294 (337)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEETTEEEE---------
T ss_pred HHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEEECCeeEE---------
Confidence 44555555553332211 000 0 0 01246899999999998887766
Q ss_pred ceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 299 YAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEE 341 (603)
Q Consensus 299 ~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee 341 (603)
++.+..+. +|.|+..++++++.+++|++++|+++...++
T Consensus 295 ---Ll~~Hh~~-pR~w~~~e~~~~e~la~~l~iai~q~e~~~~ 333 (337)
T 2ool_A 295 ---MISCHNLT-PRFVSYEVRQACELIAQVLTWQIGVLEEAEI 333 (337)
T ss_dssp ---EEEEEESS-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---EEEEecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555 9999999999999999999999988775544
No 49
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=99.06 E-value=3e-10 Score=102.28 Aligned_cols=143 Identities=10% Similarity=0.043 Sum_probs=99.5
Q ss_pred ccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhh
Q 007463 182 SLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELA 261 (603)
Q Consensus 182 ~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (603)
+.|++++++.+++.+.+.+++++|+|++.++++ .+......+.... . ...+...+.+..++.++++.++.+.....
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~d~~~~~ 76 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEH--Y-QRAVDGHSPWITGANEPEPIFVENVDDAE 76 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHH--H-HHHTCBCCSCC---CCCCCEEESCGGGSC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHH--H-HhhccCCCchhhhhhcCCcEEEeChhhCc
Confidence 468899999999999999999999999999886 5655544432211 0 01122334456778888888875443322
Q ss_pred hcc--CCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 262 AAS--SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVL 339 (603)
Q Consensus 262 ~~~--~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ 339 (603)
... .......|.++.+++||...++ .+|++.+....++.|+++++++++.+|+|++.+++++++.
T Consensus 77 ~~~~~~~~~~~~g~~s~~~vPl~~~~~-------------~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~ 143 (151)
T 3hcy_A 77 FSRELKESIVGEGIAALGFFPLVTEGR-------------LIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAE 143 (151)
T ss_dssp CCHHHHHHHHHHTCCEEEEEEEESSSS-------------EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHhcCchheEEeceEECCE-------------EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0011235678999999985443 3778888887888999999999999999999999999865
Q ss_pred HH
Q 007463 340 EE 341 (603)
Q Consensus 340 ee 341 (603)
++
T Consensus 144 ~~ 145 (151)
T 3hcy_A 144 YA 145 (151)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 50
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=99.04 E-value=1e-08 Score=110.01 Aligned_cols=162 Identities=8% Similarity=0.032 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC-hh-HHH
Q 007463 167 EAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-QD-VVR 244 (603)
Q Consensus 167 ~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~-~~~ 244 (603)
...+.++.++.+|++++|++++++++++++.+.+++|||.||.+++++.+-.......++..+..+..+|..+ |. ...
T Consensus 122 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ 201 (505)
T 3nhq_A 122 SFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARR 201 (505)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHH
Confidence 4456788999999999999999999999999999999999999999986655555555554444555666553 33 334
Q ss_pred HHhcCCeEEeCCCchhh------------hccC-------C-------CcccCCceeEEEecceeccccCCCcchhhhhc
Q 007463 245 IKGSDGVNILGPDSELA------------AASS-------G-------ESVESGPVAAIRMPMLRVSNFKGGTPELVSAC 298 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~------------~~~~-------~-------~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~ 298 (603)
....+.+..+.+..... .+.. + .....|.++.+.+|++..++.||
T Consensus 202 ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~~~LWG--------- 272 (505)
T 3nhq_A 202 LYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWG--------- 272 (505)
T ss_dssp HHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECSSSEEE---------
T ss_pred HHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEECCEEEE---------
Confidence 44555665554333221 0000 0 01246899999999998888766
Q ss_pred ceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 299 YAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEE 341 (603)
Q Consensus 299 ~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee 341 (603)
++.+..+ .+|.|+..++++++.++++++++|+++..+++
T Consensus 273 ---Ll~~Hh~-~pR~w~~~er~~~e~la~~ls~al~q~~~~~~ 311 (505)
T 3nhq_A 273 ---LFSCHHM-SPKLIPYPVRMSFQIFSQVCSAIVERLEQGRI 311 (505)
T ss_dssp ---EEEEEES-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---EEEEecC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444 59999999999999999999999998876655
No 51
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=99.02 E-value=1.1e-08 Score=110.08 Aligned_cols=161 Identities=11% Similarity=0.066 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC-hh-HHHH
Q 007463 168 AGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-QD-VVRI 245 (603)
Q Consensus 168 ~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~-~~~~ 245 (603)
..+.++.++.+|++++|+++|++++++++.+.+++|||.||.+++++..-.......++..+-.+..+|..+ |. ....
T Consensus 136 ~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~l 215 (520)
T 3zq5_A 136 FYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRL 215 (520)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHH
Confidence 355678899999999999999999999999999999999999999977655555555554444555566543 33 3344
Q ss_pred HhcCCeEEeCCCchhhh------------cc--------C-C-----CcccCCceeEEEecceeccccCCCcchhhhhcc
Q 007463 246 KGSDGVNILGPDSELAA------------AS--------S-G-----ESVESGPVAAIRMPMLRVSNFKGGTPELVSACY 299 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~------------~~--------~-~-----~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~ 299 (603)
...+....+.+....+. +- + . .....|.++.+.+|++..++.||
T Consensus 216 y~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~~~LWG---------- 285 (520)
T 3zq5_A 216 FIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDGHLWG---------- 285 (520)
T ss_dssp HHHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEETTEEEE----------
T ss_pred HHcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEECCEEEE----------
Confidence 45566655543322110 00 0 0 01247899999999998888866
Q ss_pred eeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 300 AILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEE 341 (603)
Q Consensus 300 ~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee 341 (603)
++.+..+ .+|.|+..++++++.+++|++++|.++...++
T Consensus 286 --Ll~~Hh~-~pR~w~~~er~~~e~la~~lsiai~q~e~~~~ 324 (520)
T 3zq5_A 286 --LIACHHQ-TPKVIPFELRKACEFFGRVVFSNISAQEDTET 324 (520)
T ss_dssp --EEEEEES-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --EEEEecC-CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444 69999999999999999999999998876655
No 52
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=99.01 E-value=4.8e-09 Score=105.82 Aligned_cols=157 Identities=10% Similarity=0.047 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC-hh-HHHH
Q 007463 168 AGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-QD-VVRI 245 (603)
Q Consensus 168 ~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~-~~~~ 245 (603)
..+.++.++++|++++|+++|++++++++.+.+|+|||.||.+++++.+-.......++..+-.+..+|..+ |. ....
T Consensus 132 ~~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~l 211 (327)
T 4e04_A 132 FFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRL 211 (327)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHH
Confidence 456788899999999999999999999999999999999999999987666666666555444555666543 32 3344
Q ss_pred HhcCCeEEeCCCchhh------------hccC--------------CCcccCCceeEEEecceeccccCCCcchhhhhcc
Q 007463 246 KGSDGVNILGPDSELA------------AASS--------------GESVESGPVAAIRMPMLRVSNFKGGTPELVSACY 299 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~------------~~~~--------------~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~ 299 (603)
...+....+.+..... .+.. ......|.++.+.+|++..++.||
T Consensus 212 y~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~~~LWG---------- 281 (327)
T 4e04_A 212 YTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGERLWG---------- 281 (327)
T ss_dssp HHHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEETTEEEE----------
T ss_pred HHcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEECCEEEE----------
Confidence 4555655554332210 0000 001346899999999998888866
Q ss_pred eeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHH
Q 007463 300 AILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAA 337 (603)
Q Consensus 300 ~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~ 337 (603)
+ +.+ +...+|.|+..++++++.+++|++++|++..
T Consensus 282 -L-l~~-Hh~~pR~w~~~er~~~e~la~~lsiaI~~~~ 316 (327)
T 4e04_A 282 -L-IAC-HHRKPNYVDLEVRQACELVAQVLAWQIGVME 316 (327)
T ss_dssp -E-EEE-EESSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -E-EEE-ecCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223 4458999999999999999999999997654
No 53
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=98.99 E-value=4.8e-09 Score=106.07 Aligned_cols=158 Identities=5% Similarity=0.006 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC-hh-HHH
Q 007463 167 EAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-QD-VVR 244 (603)
Q Consensus 167 ~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~-~~~ 244 (603)
+..+.++.++++|++++|+++|++++++++.+.+++|||.||.+++++..-.......++..+-.+..+|..+ |. ...
T Consensus 149 ~~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ 228 (343)
T 3s7o_A 149 TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARA 228 (343)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHH
Confidence 4466788999999999999999999999999999999999999999987766666666655444555566543 32 334
Q ss_pred HHhcCCeEEeCCCchhhh------------cc---------CC-----CcccCCceeEEEecceeccccCCCcchhhhhc
Q 007463 245 IKGSDGVNILGPDSELAA------------AS---------SG-----ESVESGPVAAIRMPMLRVSNFKGGTPELVSAC 298 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~------------~~---------~~-----~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~ 298 (603)
....+....+.+....+. +. .. .....|.++.+.+|++..++.||
T Consensus 229 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~~~LWG--------- 299 (343)
T 3s7o_A 229 LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWG--------- 299 (343)
T ss_dssp HHHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEETTEEEE---------
T ss_pred HHHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEECCEEEE---------
Confidence 445555555543322210 00 00 01347899999999998888866
Q ss_pred ceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHH
Q 007463 299 YAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAA 337 (603)
Q Consensus 299 ~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~ 337 (603)
++.+.. ..+|.|+..++++++.+++|++++|.+..
T Consensus 300 ---LL~~Hh-~~pR~w~~~er~~~e~la~~lsiaI~~~~ 334 (343)
T 3s7o_A 300 ---LIACHH-QTPYVLPPDLRTTLESLGRLLSLQVQVKE 334 (343)
T ss_dssp ---EEEEEE-SSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---EEEEEc-CCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444 67999999999999999999999997654
No 54
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=98.98 E-value=7.4e-09 Score=92.84 Aligned_cols=148 Identities=11% Similarity=0.022 Sum_probs=100.6
Q ss_pred HHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChh
Q 007463 162 IMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQD 241 (603)
Q Consensus 162 ~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 241 (603)
...+..+++.+-++++.| ++++.++++..++....+.+++++|.+|++|++ .++..+...+.... .....+..+...
T Consensus 7 ~e~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~-~~l~~~aa~G~~~~-l~~lr~~~~~~~ 83 (160)
T 3cit_A 7 SQSRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGAD-NGVQTTARHGSKER-LSTLETTADPLA 83 (160)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC---CCCEEEEEESCHHH-HTTSCCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCC-CceeeeeccCchhh-hhhhhccccccc
Confidence 345677888899999999 777889999999999999999999999999885 45555444442110 000111111111
Q ss_pred HHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecce-eccccCCCcchhhhhcceeeEEEecCCCC-cCCchHHH
Q 007463 242 VVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPML-RVSNFKGGTPELVSACYAILVLVLPNEQF-RTWSNQEL 319 (603)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~-~~~~~~g~~p~~~~~~~~i~vl~l~~~~~-~~~~~~~~ 319 (603)
.+ +.. . .......++.+++|+. ..+ -.+|++.+.++.. ..|+++|+
T Consensus 84 ~g-------pr~-------~-----~~tg~~t~svl~vPL~~~~g-------------~~~Gvlql~N~~~~~~f~~eD~ 131 (160)
T 3cit_A 84 IG-------PQW-------L-----ERPGTHLPCVLLLPLRGADE-------------GSFGTLVLANSVAISAPDGEDI 131 (160)
T ss_dssp CS-------CEE-------E-----ECTTSSSCEEEEEEEECSSS-------------SEEEEEEEEESSCCCCCCHHHH
T ss_pred cc-------ccc-------c-----cccCcccceeEEEeeecCCC-------------cEEEEEEEeccCCCCCCCHHHH
Confidence 00 000 0 0112346888999984 333 3477877766544 48999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 320 EIVKVVADQVLVALSHAAVLEESQH 344 (603)
Q Consensus 320 ~ll~~~a~q~a~al~~a~l~ee~~~ 344 (603)
+.++.+|.|+|.+++|++++++++.
T Consensus 132 e~l~lLA~~~a~aien~rL~~~L~~ 156 (160)
T 3cit_A 132 ESLQLLATLLAAHLENNRLLEALVA 156 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988543
No 55
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.97 E-value=2.9e-09 Score=120.67 Aligned_cols=165 Identities=10% Similarity=0.094 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHH
Q 007463 165 QKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVR 244 (603)
Q Consensus 165 ~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 244 (603)
..++.+.+.++++.|+ ++|++++++++++.+.+.+++++|+||+.++++..+......+... .....+|.+ +.+++
T Consensus 10 ~~e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~--~~~~~~p~~-Gi~g~ 85 (691)
T 3ibj_A 10 YTDRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVL--GEEVSFPLT-GCLGQ 85 (691)
T ss_dssp CTTHHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEE--EEEEEEECC-SSSHH
T ss_pred hHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCcc--ccceecCCc-cHHHH
Confidence 3455677999999999 9999999999999999999999999999998877665432222111 012456777 88999
Q ss_pred HHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCC-CCcCCchHHHHHHH
Q 007463 245 IKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVK 323 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~-~~~~~~~~~~~ll~ 323 (603)
+..++++..+++....+..........+.++.+++|+... ..+..+|++++... .++.|++++.++++
T Consensus 86 v~~~~~pv~i~d~~~~~~~~~~~~~~~~~~S~L~vPI~~~-----------~~g~viGvL~l~~~~~~~~ft~~d~~lL~ 154 (691)
T 3ibj_A 86 VVEDKKSIQLKDLTSEDVQQLQSMLGCELQAMLCVPVISR-----------ATDQVVALACAFNKLEGDLFTDEDEHVIQ 154 (691)
T ss_dssp HHHHCCCEEGGGSCHHHHHHHHHHHTSCCSCEEEEEEECS-----------SSCSEEEEEEEESBSSSCCCCTTHHHHHH
T ss_pred HHHHCCeEEeccchhccccccccccCCccceEEEEEeEcC-----------CCCcEEEEEEEEcCCCCCCCCHHHHHHHH
Confidence 9999999988665433321111112345789999999854 01234778886655 45689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007463 324 VVADQVLVALSHAAVLEESQH 344 (603)
Q Consensus 324 ~~a~q~a~al~~a~l~ee~~~ 344 (603)
.++.+++.++++++++++.++
T Consensus 155 ~la~~~a~al~~a~l~~~~~~ 175 (691)
T 3ibj_A 155 HCFHYTSTVLTSTLAFQKEQK 175 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876544
No 56
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=98.96 E-value=1.7e-08 Score=95.21 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=120.9
Q ss_pred HhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhh-CCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhH
Q 007463 164 KQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTL-GLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDV 242 (603)
Q Consensus 164 ~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l-~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 242 (603)
+++.....+.++++.+..+.|+++.+..++..+.+.+ +++.|.+|+.+++ .+.+....+.. ....++.+++.+
T Consensus 23 k~~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~~----~~~~i~~GeGi~ 96 (195)
T 1vhm_A 23 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGKI----ACVRIPVGRGVC 96 (195)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEESC----CCSEEETTSHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCcc----cceEecCCCChH
Confidence 4555567788999999999999999999999999999 9999999999874 45444333321 246789999999
Q ss_pred HHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHH
Q 007463 243 VRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIV 322 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll 322 (603)
+++..++++.++++....+... ....+.++.+++|+...++. +||+.+.+..+..|++++.+++
T Consensus 97 G~aa~tg~~i~V~Dv~~~p~~~---~~~~~~~S~l~VPI~~~g~v-------------iGVL~i~s~~~~~F~e~d~~~L 160 (195)
T 1vhm_A 97 GTAVARNQVQRIEDVHVFDGHI---ACDAASNSEIVLPLVVKNQI-------------IGVLDIDSTVFGRFTDEDEQGL 160 (195)
T ss_dssp HHHHHHTSCEEESCTTTCTTCC---CSCCCCSEEEEEEEEETTEE-------------EEEEEEEESSTTCCCHHHHHHH
T ss_pred HHHHhcCCEEEECCcccCcchh---hcCCCccEEEEEeEeECCEE-------------EEEEEecCCCCCCCCHHHHHHH
Confidence 9999999999986654432211 12345799999999854444 7888888877889999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007463 323 KVVADQVLVALSHAAV 338 (603)
Q Consensus 323 ~~~a~q~a~al~~a~l 338 (603)
+.+|.+++.+++++.+
T Consensus 161 ~~lA~~ia~ale~a~~ 176 (195)
T 1vhm_A 161 RQLVAQLEKVLATTDY 176 (195)
T ss_dssp HHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987753
No 57
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.96 E-value=1.1e-08 Score=107.68 Aligned_cols=167 Identities=12% Similarity=0.104 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHH----HHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChh
Q 007463 166 KEAGVHVRMLTQEIRKSLDRHTILYTTLV----ELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQD 241 (603)
Q Consensus 166 ~~~~~~l~~lt~~i~~~~d~~~il~~~~~----~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 241 (603)
++....++++.+.+++ .|++++++.+++ .+.+.+++++|+||+.++++..+......+... ......+|.+.+.
T Consensus 5 ~~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~-~~~~~~~~~~~g~ 82 (398)
T 1ykd_A 5 EQKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGD-RSLEIRIPADKGI 82 (398)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGG-CCCCCEEETTSHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCC-ccceeecCCCCch
Confidence 4455666777776754 777776655554 489999999999999999887776655443221 1123467888888
Q ss_pred HHHHHhcCCeEEeCCCchh---hhc-c-CCCcccCCceeEEEeccee-ccccCCCcchhhhhcceeeEEEecCC------
Q 007463 242 VVRIKGSDGVNILGPDSEL---AAA-S-SGESVESGPVAAIRMPMLR-VSNFKGGTPELVSACYAILVLVLPNE------ 309 (603)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~---~~~-~-~~~~~~~~~~~~l~~Pl~~-~~~~~g~~p~~~~~~~~i~vl~l~~~------ 309 (603)
++++..++++..+.+.... ... . .......+.++.+++|+.. .++ .+|++++.+.
T Consensus 83 ~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~-------------~iGvl~l~~~~~~~~~ 149 (398)
T 1ykd_A 83 AGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGR-------------LVAVVQLLNKLKPYSP 149 (398)
T ss_dssp HHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCC-------------EEEEEEEEEEBCSCCC
T ss_pred hhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCC-------------EEEEEEEeccCCcccc
Confidence 9999999999988654332 110 0 0001124578899999884 233 3677777665
Q ss_pred ---------CCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 310 ---------QFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMRE 347 (603)
Q Consensus 310 ---------~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~ 347 (603)
.++.|++++.++++.++.++++++++++++++.++.++
T Consensus 150 ~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~ 196 (398)
T 1ykd_A 150 PDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQR 196 (398)
T ss_dssp TTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999998877554433
No 58
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=98.93 E-value=1.2e-08 Score=94.36 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCC-CCCCCCCceecCC-h-hHHHHHhcCCeEEeC------
Q 007463 185 RHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGR-NYSDMCSSIPITD-Q-DVVRIKGSDGVNILG------ 255 (603)
Q Consensus 185 ~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~-~~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~------ 255 (603)
++++++++++++.+.+++++|.||++++++...........+ ..+..+..+|..+ | ........++...+.
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 368999999999999999999999999876554444444332 1122233344321 1 122222222222221
Q ss_pred ------------------CCchhhh-c-cCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCc
Q 007463 256 ------------------PDSELAA-A-SSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWS 315 (603)
Q Consensus 256 ------------------~~~~~~~-~-~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~ 315 (603)
+...... + ........|.++.+++|+...++. +|++.+.+..++.|+
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~~~l-------------~G~l~~~~~~~~~~~ 147 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQEL-------------WGLLVSHHAEPRPYS 147 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSSCC-------------CEEEEEEECSCCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEECCEE-------------EEEEEEEeCCCCCCC
Confidence 1100000 0 000112467899999999977766 556666666889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 316 NQELEIVKVVADQVLVALSHAAVL 339 (603)
Q Consensus 316 ~~~~~ll~~~a~q~a~al~~a~l~ 339 (603)
++|+++++.+|+|+|+|++|++++
T Consensus 148 ~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 148 QEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999875
No 59
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.73 E-value=4.1e-07 Score=84.74 Aligned_cols=145 Identities=7% Similarity=0.066 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHhhh-----CCceEEEEeEcCCC-CeeEEEEEecCCCCCCCCCceecCChhH
Q 007463 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTL-----GLQNCAVWMPNEIK-TEMNLTHQLNGRNYSDMCSSIPITDQDV 242 (603)
Q Consensus 169 ~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l-----~~~~~~v~l~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 242 (603)
...+.++++.+..+.|..+.+..++..+.+.+ +++.|.+|+.++++ ..+.+....+.. ....++.+++.+
T Consensus 26 ~~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~----~~~~i~~g~Gi~ 101 (180)
T 1f5m_A 26 EQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKV----ACQMIQFGKGVC 101 (180)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESC----CCSEEETTSHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCc----cceeecCCCcch
Confidence 45577777788888999999999999999999 89999999998764 566554322211 236788899999
Q ss_pred HHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEeccee-ccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHH
Q 007463 243 VRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLR-VSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEI 321 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~-~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~l 321 (603)
+++..++++.++.+....+... ....+.++.+++|+.. .++ .+|++.+.+..++.|++++.++
T Consensus 102 G~aa~~g~~v~v~Dv~~dp~~~---~~~~~~~S~l~vPi~~~~g~-------------viGVL~l~s~~~~~F~~~d~~~ 165 (180)
T 1f5m_A 102 GTAASTKETQIVPDVNKYPGHI---ACDGETKSEIVVPIISNDGK-------------TLGVIDIDCLDYEGFDHVDKEF 165 (180)
T ss_dssp HHHHHHTSCEEESCGGGSTTCC---CSSTTCCEEEEEEEECTTSC-------------EEEEEEEEESSTTCCCHHHHHH
T ss_pred hhhhhcCCEEEeCCcccCcccc---ccCcccceEEEEEEEcCCCe-------------EEEEEEeccCCCCCcCHHHHHH
Confidence 9999999999986654332211 2245789999999985 444 3788888888788999999999
Q ss_pred HHHHHHHHHHHH
Q 007463 322 VKVVADQVLVAL 333 (603)
Q Consensus 322 l~~~a~q~a~al 333 (603)
++.+|.+++.++
T Consensus 166 L~~la~~~a~~~ 177 (180)
T 1f5m_A 166 LEKLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 60
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.72 E-value=4.3e-07 Score=83.31 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhC-CceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHh
Q 007463 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLG-LQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKG 247 (603)
Q Consensus 169 ~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~-~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 247 (603)
...+.++.+-+..+.|+...+..++..+.+.++ .+.|.+|+.+++ ++.+....+.. ....++.+++.++++..
T Consensus 17 ~~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l~a~~G~~----a~~ri~~GeGv~G~va~ 90 (171)
T 3rfb_A 17 QMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVLGPFQGGV----SCIRIALGKGVCGEAAH 90 (171)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEEEEEESSS----CCCEEETTSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEEEeccCCc----cceEeeCCcCHHHHHHh
Confidence 445666777777889999999999999999997 899999999764 55555444432 23689999999999999
Q ss_pred cCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHH
Q 007463 248 SDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVAD 327 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~ 327 (603)
++++.++++....+.-. ......++.+++|+...++. +||+.+.+..++.|+++|.++|+.+|+
T Consensus 91 tg~~i~V~Dv~~~p~~i---~~~~~~~Sei~VPI~~~g~v-------------iGVL~i~s~~~~~F~e~D~~~L~~lA~ 154 (171)
T 3rfb_A 91 FQETVIVGDVTTYLNYI---SCDSLAKSEIVVPMMKNGQL-------------LGVLDLDSSEIEDYDAMDRDYLEQFVA 154 (171)
T ss_dssp TTSCEEESCTTSCSSCC---CSCTTCCEEEEEEEEETTEE-------------EEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred hCCEEEECCcccCcccc---ccCcccCceEEEEEEECCEE-------------EEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 99999996655433211 11345788999999865444 889999888888999999999999999
Q ss_pred HHHHHH
Q 007463 328 QVLVAL 333 (603)
Q Consensus 328 q~a~al 333 (603)
+++.++
T Consensus 155 ~la~~~ 160 (171)
T 3rfb_A 155 ILLEKT 160 (171)
T ss_dssp HHHHSC
T ss_pred HHHHHh
Confidence 998765
No 61
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.70 E-value=3.5e-07 Score=102.23 Aligned_cols=158 Identities=14% Similarity=0.076 Sum_probs=112.2
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCC-h-hHHHHHhcC
Q 007463 172 VRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-Q-DVVRIKGSD 249 (603)
Q Consensus 172 l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~-~~~~~~~~~ 249 (603)
++.+.++|++++|+++|++++++++.+.+|+||+.||.+++++.+-.+.....++..+-.+..+|..+ | ........+
T Consensus 134 ~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~ 213 (635)
T 4eho_A 134 LAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQ 213 (635)
T ss_dssp SSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcC
Confidence 45567789999999999999999999999999999999999987766655555444344455566553 2 234445555
Q ss_pred CeEEeCCCchhhhc--------cCC------------------CcccCCceeEEEecceeccccCCCcchhhhhcceeeE
Q 007463 250 GVNILGPDSELAAA--------SSG------------------ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILV 303 (603)
Q Consensus 250 ~~~~~~~~~~~~~~--------~~~------------------~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~v 303 (603)
....+.+......+ .+. .....|.++.+.+|++..++.|| ++
T Consensus 214 ~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~~~LWG------------Ll 281 (635)
T 4eho_A 214 RVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWG------------LV 281 (635)
T ss_dssp CEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEETTEEEE------------EE
T ss_pred CeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEcceeee------------ee
Confidence 55555332211110 000 01235899999999998888766 23
Q ss_pred EEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 304 LVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEES 342 (603)
Q Consensus 304 l~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~ 342 (603)
.+.+ ..++.|+.+++++++.++.+++++++++..+++.
T Consensus 282 ~~h~-~~pr~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~ 319 (635)
T 4eho_A 282 ACHH-YLPRFIHFELRAICELLAEAIATRITALESFAQS 319 (635)
T ss_dssp EEEE-SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeec-CCCCcCCHHHHHHHHHHHHHHHHHHhHHHhHHHH
Confidence 3444 4689999999999999999999999988766653
No 62
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.66 E-value=5.1e-07 Score=81.95 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHhhhC-CceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcC
Q 007463 171 HVRMLTQEIRKSLDRHTILYTTLVELSNTLG-LQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSD 249 (603)
Q Consensus 171 ~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~-~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 249 (603)
.+.++.+-+....|+...+..++..+.+.++ .+.|.+|+.+++ ++.+....+.. ....++.+++.++++..++
T Consensus 18 ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~--~L~l~~~~G~~----a~~ri~~GeGv~G~aa~~~ 91 (160)
T 3ksh_A 18 LKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN--ELILGPFQGHP----ACVHIPIGKGVCGTAVSER 91 (160)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT--EEEEEEEEESC----CCSEEETTSHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC--EEEEEeccCCc----ccEEeeCCCCHHHHHHhhC
Confidence 3445555566778999999999999999997 999999999865 55555444322 2368999999999999999
Q ss_pred CeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHH
Q 007463 250 GVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQV 329 (603)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~ 329 (603)
++.++++....+.-. ......++.+++|++..++. +||+.+.+..++.|+++|.++|+.+|+++
T Consensus 92 ~~i~V~Dv~~~p~~i---~~~~~~~Sei~VPI~~~g~v-------------iGVL~i~s~~~~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 92 RTQVVADVHQFKGHI---ACDANSKSEIVVPIFKDDKI-------------IGVLDIDAPITDRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp SCEEESCGGGSTTCC---GGGTTCSEEEEEEEEETTEE-------------EEEEEEEESSSSCCCHHHHHHHHHHHHHH
T ss_pred CEEEECCcccCcccc---ccCcccCceEEEEEEECCEE-------------EEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 999997655433210 11345789999999865444 88999988888999999999999999999
Q ss_pred HHHH
Q 007463 330 LVAL 333 (603)
Q Consensus 330 a~al 333 (603)
+..+
T Consensus 156 a~~~ 159 (160)
T 3ksh_A 156 EKQL 159 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 63
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.54 E-value=9.3e-09 Score=119.47 Aligned_cols=173 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCC--eeE------EEEEecCCCCCCCCCc
Q 007463 163 MKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKT--EMN------LTHQLNGRNYSDMCSS 234 (603)
Q Consensus 163 ~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~--~l~------~~~~~~~~~~~~~~~~ 234 (603)
+++.++...++++++.|++++|++++++.+++.+.+.+++++|+||+.++++. .+. ...+............
T Consensus 146 ~~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~ 225 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR 225 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCccee
Confidence 45556677899999999999999999999999999999999999999987742 111 1122211110112345
Q ss_pred eecCChhHHHHHhcCCeEEeCCCchhhhccCC--CcccCCceeEEEeccee-ccccCCCcchhhhhcceeeEEEecCCCC
Q 007463 235 IPITDQDVVRIKGSDGVNILGPDSELAAASSG--ESVESGPVAAIRMPMLR-VSNFKGGTPELVSACYAILVLVLPNEQF 311 (603)
Q Consensus 235 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~Pl~~-~~~~~g~~p~~~~~~~~i~vl~l~~~~~ 311 (603)
+|.+.+.++++..++++..+.+....+..... .....+.++.+++||.. .++. +|++.+.+..+
T Consensus 226 ~p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL~~~~g~v-------------iGvL~l~~~~~ 292 (878)
T 3bjc_A 226 LEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPIKNHREEV-------------VGVAQAINKKS 292 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEeeEcCCCCE-------------EEEEEEEecCC
Confidence 67777778888999988877554332221111 01123467889999885 3443 67777776554
Q ss_pred c---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 312 R---TWSNQELEIVKVVADQVLVALSHAAVLEESQHMREK 348 (603)
Q Consensus 312 ~---~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~ 348 (603)
+ .|+++|.++++.+|.+++++|++++++++.++.+++
T Consensus 293 ~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~~~ 332 (878)
T 3bjc_A 293 GNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENKR 332 (878)
T ss_dssp ----------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 899999999999999999999999998876655444
No 64
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.53 E-value=4.4e-07 Score=77.07 Aligned_cols=149 Identities=11% Similarity=0.111 Sum_probs=102.4
Q ss_pred HHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCC-CCCCCcee---cCChhHHHHHhcCCeEE
Q 007463 178 EIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY-SDMCSSIP---ITDQDVVRIKGSDGVNI 253 (603)
Q Consensus 178 ~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~-~~~~~~i~---~~~~~~~~~~~~~~~~~ 253 (603)
++++-.|.+++......-+.++.++...++|+.|.++..+.-..+.+-..- -+.-..+| -.-|.+....+.++-..
T Consensus 7 r~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll 86 (162)
T 3eea_A 7 RLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLM 86 (162)
T ss_dssp CGGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEE
T ss_pred hHhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCccc
Confidence 345567899999999999999999999999999999888776655553221 00001122 23466777788777766
Q ss_pred eCCCch--hhhccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCc-CCchHHHHHHHHHHHHHH
Q 007463 254 LGPDSE--LAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFR-TWSNQELEIVKVVADQVL 330 (603)
Q Consensus 254 ~~~~~~--~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~-~~~~~~~~ll~~~a~q~a 330 (603)
+++... +-.+.-. .-.+.-..+.+||...+.. +|+++..+...+ .|+++|+.++..+|++.|
T Consensus 87 ~~dp~~s~l~tp~l~--k~~~~~~ILgVPL~~g~qV-------------IGVLFaArR~~R~~Fs~dEiALL~SLAahAA 151 (162)
T 3eea_A 87 LTDPGSSDLLTPKLR--KLLRNLCVLAVPMVVRTQV-------------IGAVFMARTRDNPPFSDAETAIIRDLVSHAA 151 (162)
T ss_dssp ESCGGGCTTSCHHHH--HHTTTEEEEEEEEEETTEE-------------EEEEEEEEETTSCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchhccHHHH--HHHhhCeEEEecceeCCEE-------------EEEEEEecccccCCCCHHHHHHHHHHHHHHH
Confidence 643211 1111000 0134556788998865554 889998888888 999999999999999999
Q ss_pred HHHHHHHHHHH
Q 007463 331 VALSHAAVLEE 341 (603)
Q Consensus 331 ~al~~a~l~ee 341 (603)
+|++|+++++|
T Consensus 152 IAIdnArLldE 162 (162)
T 3eea_A 152 LVVSHMQLFDE 162 (162)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHhhhhcC
Confidence 99999998764
No 65
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.52 E-value=4.2e-08 Score=102.45 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=63.6
Q ss_pred EecHHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccc--
Q 007463 480 MGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS-- 557 (603)
Q Consensus 480 ~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~-- 557 (603)
.++...+.+++.|+++||+++ .++.|.|.+... -.|+|.|||+|||++..++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~--~~~~I~V~i~~~------------------------~~i~V~DnG~GIp~~~~~~~~ 84 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG--YATEILVRLNED------------------------GSLTVEDNGRGIPVDLMPEEG 84 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SCCEEEEEECTT------------------------SCEEEEECSSCCCCSEETTTT
T ss_pred chHHHHHHHHHHHHHHHhhhC--CCCEEEEEEEcC------------------------CEEEEEEcCCCCCHHHhhhcc
Confidence 678899999999999999983 567788777432 1389999999999999887
Q ss_pred ------ccccccccc-------cCCCCCCCchHHHHHHHHHHh
Q 007463 558 ------VAQLGIRRI-------VNEGIEDRMSFSVCKKLVQVR 587 (603)
Q Consensus 558 ------if~~f~~~~-------~~~~~G~GLGL~i~k~iv~~~ 587 (603)
+|..+++.. ....++.|+||++|+.+.+.+
T Consensus 85 ~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 85 KPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp EEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred ccchhhheeeeeecccccCccccccCCCCCcceeeecccccce
Confidence 887765421 113456999999999999743
No 66
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.48 E-value=1.8e-07 Score=96.74 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccc
Q 007463 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (603)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (603)
++.+++.||++||+++. .+.|.|.+... +. ..|+|.|||+||++++++++|++|++
T Consensus 34 ~~~~vl~eLv~NAiDA~--a~~I~I~i~~~-~~---------------------~~I~V~DnG~Gi~~~~l~~~f~~~~t 89 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG--ATNIDLKLKDY-GV---------------------DLIEVSDNGCGVEEENFEGLTLKHHT 89 (365)
T ss_dssp CHHHHHHHHHHHHHHTT--CSEEEEEEEGG-GT---------------------SEEEEEECSCCCCGGGSGGGGC----
T ss_pred hHHHHHHHHHHHHHHCC--CCEEEEEEEeC-Cc---------------------EEEEEEECCCCcCHHHHHHHhhhccc
Confidence 46899999999999964 45677777532 11 46899999999999999999999876
Q ss_pred cccCC--------CCCC-CchHHHHHHH
Q 007463 565 RIVNE--------GIED-RMSFSVCKKL 583 (603)
Q Consensus 565 ~~~~~--------~~G~-GLGL~i~k~i 583 (603)
++... ..|. |+||+.+..+
T Consensus 90 sK~~~~~dl~~i~s~G~rG~gl~si~~v 117 (365)
T 1h7s_A 90 SKIQEFADLTQVETFGFRGEALSSLCAL 117 (365)
T ss_dssp ------CCTTCSEEESSSSSHHHHHHHH
T ss_pred cccccccchhcccccCCCCchhhhhhhh
Confidence 43221 1244 9999877644
No 67
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.40 E-value=8.8e-07 Score=74.96 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007463 366 ASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNS 429 (603)
Q Consensus 366 a~~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~s 429 (603)
..+.+.+|++.+|||+|||+++|.++++.+.+ +..+..+.+.+.+++|..++++++++.
T Consensus 56 ~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 56 LADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34556789999999999999999999988753 234556999999999999999999873
No 68
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.38 E-value=3.9e-08 Score=114.24 Aligned_cols=173 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEE--EEecCCC------CCCCCCce
Q 007463 165 QKEAGVHVRMLTQEIRK-SLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLT--HQLNGRN------YSDMCSSI 235 (603)
Q Consensus 165 ~~~~~~~l~~lt~~i~~-~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~--~~~~~~~------~~~~~~~i 235 (603)
++++.+.+.++++.|.. +.|++++++.++..+.+.+++++|+|++.++++..+... +...+.. .......+
T Consensus 329 ~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~~~~~ 408 (878)
T 3bjc_A 329 ENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTREHDAN 408 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhcccccccccccccccccccc
Confidence 34445567778888854 579999999999999999999999999998876544322 1111110 00012345
Q ss_pred ecCChhHHHHHhcCCeEEeCCCchhhhccC--CCcc---cCCceeEEEecceec--cccCCCcchhhhhcceeeEEEecC
Q 007463 236 PITDQDVVRIKGSDGVNILGPDSELAAASS--GESV---ESGPVAAIRMPMLRV--SNFKGGTPELVSACYAILVLVLPN 308 (603)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~l~~Pl~~~--~~~~g~~p~~~~~~~~i~vl~l~~ 308 (603)
|.+.+.++++..++++..+.+......... .... ..+.++.+++||... ++. +|++.+.+
T Consensus 409 p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~v-------------iGVL~l~~ 475 (878)
T 3bjc_A 409 KINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKV-------------IGVCQLVN 475 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEEecCCCCcE-------------EEEEEEEE
Confidence 666667788888888776643222211110 0001 145788999998854 333 66777766
Q ss_pred CCC------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 309 EQF------RTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLE 350 (603)
Q Consensus 309 ~~~------~~~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~~~~~L~ 350 (603)
..+ +.|++++.++++.+|.++|+||+|++++++.++..++.+
T Consensus 476 ~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~~~ 523 (878)
T 3bjc_A 476 KMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQM 523 (878)
T ss_dssp ------------------------------------------------
T ss_pred cCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 544 689999999999999999999999999998877655533
No 69
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.27 E-value=8.1e-07 Score=91.02 Aligned_cols=75 Identities=9% Similarity=-0.008 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccc
Q 007463 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (603)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (603)
++.+++.||++||++|. .+.|.|.+...+ . ..|+|.|||+||++++++.+|++|++
T Consensus 24 ~~~~~v~ELi~NaidA~--a~~I~I~i~~~~-~---------------------~~i~V~DnG~Gi~~~~l~~~~~~~~t 79 (333)
T 1b63_A 24 RPASVVKELVENSLDAG--ATRIDIDIERGG-A---------------------KLIRIRDNGCGIKKDELALALARHAT 79 (333)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEEGGG-T---------------------SEEEEEECSCCCCGGGHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHCC--CCeEEEEEEeCC-c---------------------eEEEEEEcCCCcCHHHHHHhhhcccc
Confidence 57899999999999965 457777775421 1 45899999999999999999999876
Q ss_pred ccc---------CCCCCCCchHHHHHHH
Q 007463 565 RIV---------NEGIEDRMSFSVCKKL 583 (603)
Q Consensus 565 ~~~---------~~~~G~GLGL~i~k~i 583 (603)
.+- ...++.|+||+.+..+
T Consensus 80 sK~~~~~d~~~~~~~G~~G~gl~si~~v 107 (333)
T 1b63_A 80 SKIASLDDLEAIISLGFRGEALASISSV 107 (333)
T ss_dssp SSCCSHHHHHTCCSSCCSSCHHHHHHTT
T ss_pred cCccccchhhhccccCccccchhhhhcC
Confidence 432 1235689999987655
No 70
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.26 E-value=6.4e-06 Score=77.15 Aligned_cols=140 Identities=10% Similarity=0.067 Sum_probs=78.6
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCCccceeeeeeHHHHHH
Q 007463 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIK 450 (603)
Q Consensus 371 ~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr~e~g~~~l~~~~~~l~~li~ 450 (603)
.+.+....||+.|-|+.|.|++++= .-++..+|++.+....+.... ++++.. ..+.
T Consensus 22 ~~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~~~~-------~~~i~~-------------P~la 77 (192)
T 1ixm_A 22 IHLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKHESK-------LSNLKT-------------PHLA 77 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHH-------HHTTTC-------------HHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHH-------HHhCCC-------------HHHH
Confidence 3456778899999999999998752 234456677777666655432 222211 1122
Q ss_pred HHHHHHHHHHhhcCcEEEEEE-CCCCCceEEecHHHHHHHHHHHHHhhccc------CCCCcEEEEEEEee--cCCCCcc
Q 007463 451 EAACLARCLSIYRGFGFSIEV-DRSLPDHVMGDERRVFQVILHMVGSLLNC------NSRRGTVLFRVVSE--NGSQDRN 521 (603)
Q Consensus 451 ~~~~~~~~~~~~~~i~l~~~~-~~~lp~~v~~D~~~l~qvl~NLl~NAik~------~~~~g~i~i~v~~~--~~~~~~~ 521 (603)
..+ +....+.+++.+.+++ ++. . .+...+..+ .||++||..+ ..+.+.|.|++... ++.
T Consensus 78 ~lL--l~K~~~a~e~~i~lev~~~~-s-~l~~~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~---- 145 (192)
T 1ixm_A 78 FDF--LTFNWKTHYMTLEYEVLGEI-K-DLSAYDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQ---- 145 (192)
T ss_dssp HHH--HHGGGSCCSSEEEEEEESSC-C-CCTTTHHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSS----
T ss_pred HHH--HHHHHHhccCCeEEEEecCc-c-ccCCCcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCE----
Confidence 222 1222344666776633 322 1 122233333 4444444332 23577888888764 332
Q ss_pred ccccccccccCCCCceEEEEEEEEcCCCCCcccccccccccc
Q 007463 522 DKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGI 563 (603)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~ 563 (603)
+.|+|.|+|++|+++.++++|+..+
T Consensus 146 -----------------l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 146 -----------------LILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp -----------------CEEEEEEESCBSCGGGCC-------
T ss_pred -----------------EEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 8899999999999999999998543
No 71
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.15 E-value=1e-06 Score=92.91 Aligned_cols=85 Identities=8% Similarity=0.034 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHHhhcccCC---CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccc
Q 007463 482 DERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSV 558 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~---~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~i 558 (603)
+...+..++.||+.||++|.. ++|.|.|++....+. .+.++|.|+|+|+|+.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~--------------------~l~i~V~D~G~g~~~~----- 348 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG--------------------NVRASVIDRGQWKDHR----- 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS--------------------EEEEEEEESCBC---------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC--------------------EEEEEEEECCCCCCCC-----
Confidence 346789999999999999852 378899998765321 3999999999999876
Q ss_pred cccccccccCCCCCCCchHHHHHHHHHHhCCeeccCCcceEEEE
Q 007463 559 AQLGIRRIVNEGIEDRMSFSVCKKLVQVRISIKFPAYVFTCFRV 602 (603)
Q Consensus 559 f~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~~~g~Gt~f~i 602 (603)
....+.|+||.|++.+++.++ +...+.|+++++
T Consensus 349 ---------~~~~~~G~GL~lv~~l~~~~~--~~~~~~G~~v~~ 381 (399)
T 3ke6_A 349 ---------DGARGRGRGLAMAEALVSEAR--IMHGAGGTTATL 381 (399)
T ss_dssp -----------------CHHHHHTTSSEEE--EEEETTEEEEEE
T ss_pred ---------CCCCCCCcHHHHHHHHHHhee--eEECCCcEEEEE
Confidence 112367999999999988665 223356888876
No 72
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.14 E-value=3.5e-06 Score=86.03 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccc
Q 007463 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (603)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (603)
++.+++.||++||+++ ..+.|.|.+... +. ..|+|.|||+|||+++++.+|++|++
T Consensus 28 ~~~~vv~eLv~NAidA--~a~~I~I~i~~~-~~---------------------~~I~V~DnG~GI~~~~l~~~~~~~~t 83 (348)
T 3na3_A 28 RPANAIKEMIENCLDA--KSTSIQVIVKEG-GL---------------------KLIQIQDNGTGIRKEDLDIVCERFTT 83 (348)
T ss_dssp SHHHHHHHHHHHHHHT--TCSEEEEEEEGG-GT---------------------SEEEEEECSCCCCGGGGGTTTSTTCC
T ss_pred CHHHHHHHHHHHHHHc--CCCEEEEEEEeC-CE---------------------EEEEEEECCcCcChHHhhhhhccccc
Confidence 4679999999999996 356788877522 11 46999999999999999999999876
Q ss_pred cccCC---------CCCCCchHHHHHHH
Q 007463 565 RIVNE---------GIEDRMSFSVCKKL 583 (603)
Q Consensus 565 ~~~~~---------~~G~GLGL~i~k~i 583 (603)
++-.. .+-.|.||+-...+
T Consensus 84 sK~~~~~dl~~i~s~GfrGeaL~Si~av 111 (348)
T 3na3_A 84 SKLQSFEDLASISTYGFRGEALASISHV 111 (348)
T ss_dssp SSCCCC---------CCTTCHHHHHHHS
T ss_pred cccCcchhhhccccCCcCChHHHHhhcc
Confidence 43221 12347788765544
No 73
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=97.94 E-value=3.6e-06 Score=70.83 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=68.6
Q ss_pred hhhHHHHHHHhhHhHHHH--HHHhcCCCCchHHHHHHHHHHHHHhhHHHhHHhh-----------cCcchHHHHHHHHHH
Q 007463 50 VSDFLIAVAYFSIPVELL--YFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSFQLMLSLTVF 116 (603)
Q Consensus 50 ~sd~~ia~a~~~i~~~l~--~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 116 (603)
+.|++++++.+.+.+... ++++ .+.+|..++|++++++++...+..+++.+ |.||++++. +.++.
T Consensus 4 ~~~~~~~~~~~~~~t~~~~~~~~~-~~~~n~~l~fll~Vv~~A~~~g~~pa~~aa~ls~l~~nffF~~P~~sf~-i~~~~ 81 (107)
T 2ksf_A 4 IQGSVVAAALSAVITLIAMQWLMA-FDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLFFIAPRGTLA-VSDVQ 81 (107)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHST-TSSCCSSHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHTTSCSSCTTC-SSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhcCCCcccc-ccCHh
Confidence 368888888888877654 4455 67789999999999999998888776655 377777665 88999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007463 117 KILTALVSCATSITLITL 134 (603)
Q Consensus 117 ~~lt~lv~~~~ai~l~~l 134 (603)
+.+|+++++++|+..+.+
T Consensus 82 ~~vt~~v~l~val~~s~L 99 (107)
T 2ksf_A 82 YLLTFAVMLTVGLVIGNL 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999
No 74
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.90 E-value=4.3e-05 Score=64.25 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 007463 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSP 430 (603)
Q Consensus 368 ~~~~~~l~~~sHeLRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~sr 430 (603)
+.+.+|++.++||+|||++.|.+.++.+.+. ..+..+.+.+.+.++..++++++++++
T Consensus 58 ~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 58 DDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3457899999999999999999999877542 256788999999999999999999875
No 75
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.75 E-value=2e-05 Score=81.13 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccccccccccc
Q 007463 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (603)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (603)
++.+++.||++||+++. .+.|.|.+.. ++. ..|+|.|||+||++++++.+|++|+.
T Consensus 25 ~~~~vv~eLv~NaiDA~--a~~I~I~i~~-~~~---------------------~~i~V~DnG~Gi~~~~l~~~~~~~~t 80 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN--ANQIEIIFKD-YGL---------------------ESIECSDNGDGIDPSNYEFLALKHYT 80 (367)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEET-TTT---------------------SEEEEEECSCCCCGGGTTTTTCCEEC
T ss_pred CHHHHHHHHHHHHHHCC--CCEEEEEEEe-CCE---------------------EEEEEEECCCCcChhHhccceecccc
Confidence 46799999999999964 4577777642 111 56999999999999999999999875
Q ss_pred c
Q 007463 565 R 565 (603)
Q Consensus 565 ~ 565 (603)
+
T Consensus 81 s 81 (367)
T 3h4l_A 81 S 81 (367)
T ss_dssp -
T ss_pred C
Confidence 4
No 76
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.01 E-value=0.00012 Score=70.31 Aligned_cols=76 Identities=8% Similarity=-0.044 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
.++.+||.||+++.. .++.+.|.+....+. ..|.|.|||+||+++
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~---------------------~~i~I~DnG~GMs~e 87 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ---------------------KVLEIRDSGIGMTKA 87 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGG---------------------TEEEEEECSCCCCHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCC---------------------CEEEEEEcCCCCCHH
Confidence 689999999999753 235555666544321 358999999999999
Q ss_pred ccccccccccccc------------c-CCCCCCCchHHHHHHHH
Q 007463 554 VSTSVAQLGIRRI------------V-NEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 554 ~~~~if~~f~~~~------------~-~~~~G~GLGL~i~k~iv 584 (603)
++...|....+.. . ...+..|+|++-+..++
T Consensus 88 dl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~ 131 (220)
T 2wer_A 88 ELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVA 131 (220)
T ss_dssp HHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTE
T ss_pred HHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcC
Confidence 9877665432210 0 11234689987665443
No 77
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.98 E-value=0.00073 Score=70.27 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc--------
Q 007463 483 ERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV-------- 554 (603)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~-------- 554 (603)
...+..++.|.++||+. .....|.|.+... + .|+|.|||+|||.+.
T Consensus 33 ~~lv~ElvdNsiD~a~~--g~a~~I~V~i~~~-g-----------------------~I~V~DnG~GIp~~~~~~~~~~~ 86 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--GHAKRVDVILHAD-Q-----------------------SLEVIDDGRGMPVDIHPEEGVPA 86 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCSEEEEEECTT-S-----------------------CEEEEECSSCCCCSBCTTTCSBH
T ss_pred HHHHHHHHHHHHHHHhc--CCCCEEEEEEecC-C-----------------------EEEEEECCCCcCcccccccCcch
Confidence 45566666666666652 4466777777432 1 389999999999988
Q ss_pred cccccccccccc--c----CCCCC-CCchHHHHHHHHH
Q 007463 555 STSVAQLGIRRI--V----NEGIE-DRMSFSVCKKLVQ 585 (603)
Q Consensus 555 ~~~if~~f~~~~--~----~~~~G-~GLGL~i~k~iv~ 585 (603)
.+.+|..++.+. . ...+| .|.||+.+..+.+
T Consensus 87 ~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 87 VELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp HHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred hhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 466676654321 1 11234 7999999988864
No 78
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=96.81 E-value=0.0064 Score=60.38 Aligned_cols=130 Identities=12% Similarity=0.113 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHhhhCCceEEEEeEcCCC-CeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhcc
Q 007463 186 HTILYTTLVELSNTLGLQNCAVWMPNEIK-TEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAAS 264 (603)
Q Consensus 186 ~~il~~~~~~l~~~l~~~~~~v~l~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
..+.+..++.+++..+.+.+++|..++++ .........++. ..+..+||.+.+++.+++...+.........
T Consensus 25 ~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~~------~~l~~~DpLVr~alet~~l~~v~~~~~~~~~- 97 (298)
T 4eu0_A 25 DALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGEM------PALDADDLLVRTCLERGELVSVRQELLERGE- 97 (298)
T ss_dssp HHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESSC------CCCCSCCHHHHHHHHHTSCEECCC--------
T ss_pred hHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCCC------CCCCCCCHHHHHHHHhCCceeechhhhhccc-
Confidence 45577889999999999999999887765 333333344432 3677789999999999998887543221110
Q ss_pred CCCcccCCceeEEEecce-eccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007463 265 SGESVESGPVAAIRMPML-RVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVL 339 (603)
Q Consensus 265 ~~~~~~~~~~~~l~~Pl~-~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~al~~a~l~ 339 (603)
.....++-+++|++ ..++ .+|++++..-....|+.+.++++.+++++++.+++++...
T Consensus 98 ----~~~~sryL~viPLld~~g~-------------i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~ 156 (298)
T 4eu0_A 98 ----QRAHSAAAVCVPLVDTDGR-------------ILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRA 156 (298)
T ss_dssp ----------CCEEEEEECTTSC-------------EEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred ----cccccceEEEEEeecCCCc-------------EEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhc
Confidence 01134666899987 3333 3778888888889999999999999999999999888754
No 79
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.63 E-value=0.00037 Score=67.43 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
.++.+||.||+++.. ..+.+.|.+....+. ..|.|.|||.||+++
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~---------------------~~i~I~DnG~GMs~e 108 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK---------------------RTLTISDNGVGMTRD 108 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT---------------------TEEEEEECSSCCCHH
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc---------------------eEEEEEECCCCCCHH
Confidence 589999999999751 233344555444322 238999999999999
Q ss_pred ccccccccc
Q 007463 554 VSTSVAQLG 562 (603)
Q Consensus 554 ~~~~if~~f 562 (603)
++...|..+
T Consensus 109 dl~~~~~~i 117 (235)
T 2ior_A 109 EVIDHLGTI 117 (235)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHH
Confidence 988777543
No 80
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.39 E-value=0.0022 Score=66.67 Aligned_cols=77 Identities=8% Similarity=0.118 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhcccC--CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccccc------
Q 007463 485 RVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVST------ 556 (603)
Q Consensus 485 ~l~qvl~NLl~NAik~~--~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~------ 556 (603)
-+.+++..+++||++.. .....|.|.+... + .|+|.|||+|||.+..+
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~--g----------------------~I~V~DnG~GIp~~~~~~~~~~~ 89 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHAD--N----------------------SVSVQDDGRGIPTGIHPEEGVSA 89 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECTT--S----------------------CEEEEECSSCCCCSBCTTTSSBH
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCC--C----------------------EEEEEECCCCcccCcccccCcch
Confidence 46666666666666632 2345676666432 1 38999999999998843
Q ss_pred --ccccccccc--cc---C-CCCC-CCchHHHHHHHHH
Q 007463 557 --SVAQLGIRR--IV---N-EGIE-DRMSFSVCKKLVQ 585 (603)
Q Consensus 557 --~if~~f~~~--~~---~-~~~G-~GLGL~i~k~iv~ 585 (603)
-+|...+.+ .+ . ..+| .|.|++.+..+-+
T Consensus 90 ~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 90 AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp HHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred HHHhheeccccCCcCCCcccccCCccccchHHHHHhcC
Confidence 355533221 10 1 1223 7999999988774
No 81
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.24 E-value=0.0011 Score=64.98 Aligned_cols=76 Identities=4% Similarity=-0.032 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
.++.+||.||+++.. .++.+.|.+....+. -.|.|.|||.||+++
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~---------------------~~I~I~DnG~GMs~e 129 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQD---------------------RTLTIVDTGIGMTKA 129 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTT---------------------TEEEEEECSCCCCHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCe---------------------eEEEEEECCcCCCHH
Confidence 478999999998643 135566666544322 348999999999999
Q ss_pred ccccccccccccc-------------cCCCCCCCchHHHHHHHH
Q 007463 554 VSTSVAQLGIRRI-------------VNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 554 ~~~~if~~f~~~~-------------~~~~~G~GLGL~i~k~iv 584 (603)
++...|....+.. ....+..|+|++-+..++
T Consensus 130 dL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va 173 (264)
T 1yc1_A 130 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 173 (264)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE
T ss_pred HHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCC
Confidence 9866654332110 112235689998776655
No 82
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=96.00 E-value=0.079 Score=51.40 Aligned_cols=160 Identities=11% Similarity=0.040 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEe
Q 007463 148 LKKKAWDLGREVGI----IMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQL 223 (603)
Q Consensus 148 l~~~~~~l~~~~~~----~~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~ 223 (603)
+|.++.+|+++... +++.++....+..+..++-.+.|.+++++.+...+.+.|+++.+.+++.++....
T Consensus 77 LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~------- 149 (252)
T 3e98_A 77 LRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVS------- 149 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCcccc-------
Confidence 45556667666654 3444555566888888999999999999999999999999999999998764210
Q ss_pred cCCCCCCCCCceecC--ChhHHHHHhcCCeEEeCCCchhhhccCCCcccCCceeEEEecceeccccCCCcchhhhhccee
Q 007463 224 NGRNYSDMCSSIPIT--DQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAI 301 (603)
Q Consensus 224 ~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i 301 (603)
.....+.. ...+...+..+.+.............-+........|...+||... + .+
T Consensus 150 -------~~~~~~~~~~~~~~~~~l~~~~py~G~l~~~e~~~lFg~~~a~~v~S~AllpL~~~-------------~-~~ 208 (252)
T 3e98_A 150 -------VGRSVSSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGESDRDEIGSAAVVSLSFQ-------------G-LH 208 (252)
T ss_dssp -------SSEEECHHHHHHHHHHHHTTCCCSTTCCCHHHHHHHCCCTTGGGCCEEEEEEEESS-------------S-EE
T ss_pred -------chhhccchhHHHHHHHHhCCCCceECCCCchHHHHhcCCCccccccceEEEEcCCC-------------C-ce
Confidence 00001100 0112333433333332211111111111101223567778887421 1 37
Q ss_pred eEEEecCCCCcCCchH-HHHHHHHHHHHHHHHHHH
Q 007463 302 LVLVLPNEQFRTWSNQ-ELEIVKVVADQVLVALSH 335 (603)
Q Consensus 302 ~vl~l~~~~~~~~~~~-~~~ll~~~a~q~a~al~~ 335 (603)
|+|++.+..+..|+++ ...+|+.+|.-++.++.+
T Consensus 209 GlLalGS~D~~rF~p~mgT~fL~~La~vvs~~L~r 243 (252)
T 3e98_A 209 GVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPR 243 (252)
T ss_dssp EEEEEEESSTTGGGSTTTTHHHHHHHHHHHHHGGG
T ss_pred EEEEEcCCChhhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 8888888888888764 578889888888877754
No 83
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.64 E-value=0.0034 Score=60.61 Aligned_cols=54 Identities=6% Similarity=0.011 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
.++..||.||+++.. +++.+.|.+....+. -.|.|.|||.||+++
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~---------------------~~i~I~DnG~GMt~e 93 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK---------------------NLLHVTDTGVGMTRE 93 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT---------------------TEEEEEECSCCCCHH
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC---------------------CEEEEEECCcCCCHH
Confidence 578899999998643 223344555444321 248999999999999
Q ss_pred ccccccccc
Q 007463 554 VSTSVAQLG 562 (603)
Q Consensus 554 ~~~~if~~f 562 (603)
++...|...
T Consensus 94 dl~~~l~~i 102 (236)
T 2gqp_A 94 ELVKNLGTI 102 (236)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhh
Confidence 987776543
No 84
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=95.63 E-value=0.011 Score=56.26 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhcccCC--CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc------
Q 007463 484 RRVFQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS------ 555 (603)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~--~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~------ 555 (603)
.-+.+++..+++||++..- ....|.|.+.. ++ .|+|.|||.|||.+..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~--~g----------------------~i~V~DnGrGIp~~~~~~~~~~ 89 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA--DN----------------------SVSVQDDGRGIPTGIHPEEGVS 89 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT--TS----------------------CEEEEECSSCCCCSEETTTTEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC--CC----------------------cEEEEECCcCcccccccccCcc
Confidence 5678888888888887522 34556666543 21 2899999999999874
Q ss_pred --cccccc------ccc-cccCCCCCCCchHHHHHHHH
Q 007463 556 --TSVAQL------GIR-RIVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 556 --~~if~~------f~~-~~~~~~~G~GLGL~i~k~iv 584 (603)
+-+|.. |.. .+....+=.|.|++.+..+-
T Consensus 90 ~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS 127 (220)
T 4duh_A 90 AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 127 (220)
T ss_dssp HHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTE
T ss_pred hhhheeeecccCCCcCCCccccccCccceecchhcccc
Confidence 234432 111 01111223688999888765
No 85
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=95.58 E-value=0.014 Score=60.72 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhcccC---CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc-----
Q 007463 484 RRVFQVILHMVGSLLNCN---SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS----- 555 (603)
Q Consensus 484 ~~l~qvl~NLl~NAik~~---~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~----- 555 (603)
.-|.+++..+++||++.. .....|.|.+...++ .|+|.|||.|||.+..
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~~-----------------------~I~V~DnGrGIPv~~h~~~~~ 107 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENN-----------------------LISIWNNGKGIPVVEHKVEKM 107 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------------------EEEEEEESSCCCCSEETTTTE
T ss_pred chHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCCC-----------------------EEEEEECCCcccCccccccCc
Confidence 458899999999999854 335667777654321 3899999999999873
Q ss_pred ---cccccc------ccc-cccCCCCCCCchHHHHHHH
Q 007463 556 ---TSVAQL------GIR-RIVNEGIEDRMSFSVCKKL 583 (603)
Q Consensus 556 ---~~if~~------f~~-~~~~~~~G~GLGL~i~k~i 583 (603)
+-+|.. |.. .+.-..+=.|.|++.+..+
T Consensus 108 ~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAl 145 (400)
T 1zxm_A 108 YVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIF 145 (400)
T ss_dssp EHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHT
T ss_pred cchhheeeeecccCCCCCCcccccCCccccceeeeEEe
Confidence 234442 111 1111223468999999887
No 86
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=95.32 E-value=0.0051 Score=58.82 Aligned_cols=53 Identities=4% Similarity=0.039 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
-++..|+.||.++.. .++.+.|.+....+. -.|.|.|||.||+++
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~---------------------~~i~V~DnG~GMs~e 93 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD---------------------RTLTIVDTGIGMTKA 93 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT---------------------TEEEEEECSCCCCHH
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCe---------------------eEEEEEeCCCCCCHH
Confidence 468889999987532 223556666544322 348999999999999
Q ss_pred cccccccc
Q 007463 554 VSTSVAQL 561 (603)
Q Consensus 554 ~~~~if~~ 561 (603)
++...+.+
T Consensus 94 dl~~~l~~ 101 (228)
T 3t0h_A 94 DLINNLGT 101 (228)
T ss_dssp HHHTGGGS
T ss_pred HHHHHHHh
Confidence 98666543
No 87
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=95.24 E-value=0.016 Score=55.32 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHhhcccCC--CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc-----
Q 007463 482 DERRVFQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV----- 554 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~--~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~----- 554 (603)
+..-|.+++..+++||++..- ....|.|.+ ..++ .|+|.|||.|||.+.
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i--~~~g----------------------~i~V~DnG~GIp~~~h~~~~ 92 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI--NKDG----------------------SLTVQDHGRGMPTGMHAMGI 92 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS----------------------CEEEEECSSCCCCSBCGGGC
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEE--eCCC----------------------eEEEEEcCCCccccccccCc
Confidence 445677888888888886432 234555554 3221 289999999999987
Q ss_pred --ccccccccc------c-cccCCCCCCCchHHHHHHHH
Q 007463 555 --STSVAQLGI------R-RIVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 555 --~~~if~~f~------~-~~~~~~~G~GLGL~i~k~iv 584 (603)
.+-+|.... . .+....+=.|.|++.+..+-
T Consensus 93 ~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS 131 (226)
T 4emv_A 93 PTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALS 131 (226)
T ss_dssp BHHHHHHHCBC--------------CGGGCCHHHHHHTE
T ss_pred eehheeEEeecccCccCccceEeccccccccchhhhhcc
Confidence 444553211 1 11111233688999888765
No 88
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=95.18 E-value=0.027 Score=58.76 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcccC---CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccccc----
Q 007463 485 RVFQVILHMVGSLLNCN---SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS---- 557 (603)
Q Consensus 485 ~l~qvl~NLl~NAik~~---~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~---- 557 (603)
-|.+++..+++||++.. +....|.|.+...++ .|+|.|||.|||.+..+.
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~~-----------------------sI~V~DnGrGIPv~~h~~~g~~ 120 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH-----------------------TIEVKNDGKGIPIEIHNKENIY 120 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------------------EEEEEEESSCCCCSBCTTTCSB
T ss_pred hHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCCC-----------------------EEEEEECCCcccCcccccCCcc
Confidence 47788888888888643 446677777764321 389999999999887443
Q ss_pred ----cccc------ccc-cccCCCCCCCchHHHHHHHH
Q 007463 558 ----VAQL------GIR-RIVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 558 ----if~~------f~~-~~~~~~~G~GLGL~i~k~iv 584 (603)
+|.. |.. .+.-.++=.|.|.+.|.-+-
T Consensus 121 ~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS 158 (418)
T 1pvg_A 121 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 158 (418)
T ss_dssp HHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTE
T ss_pred cceEEEEEEecccccCCCceeccCCccceeeeeeeecc
Confidence 4433 211 11122334699999998875
No 89
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=95.06 E-value=0.0063 Score=62.65 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHhhcccCCC--CcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCc
Q 007463 482 DERRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQP 552 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~--~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~ 552 (603)
|+.-+.+++..|++||++..-. ...|.|.+. +++ .|+|.|||.|||.
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~--~~g----------------------~I~V~DnGrGIp~ 75 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVG--GDG----------------------SIALFCTSRTVTA 75 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS----------------------CEEEEEEESSCCH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEe--CCC----------------------EEEEEECCCCcCH
Confidence 5678999999999999985333 345555553 221 3899999999998
No 90
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=95.04 E-value=0.0074 Score=59.21 Aligned_cols=52 Identities=6% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc
Q 007463 489 VILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (603)
Q Consensus 489 vl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (603)
+|.+||.||+++.. .++.+.|++....+. -.|.|.|||+||+.++
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~---------------------~~l~I~DnGiGMt~ed 90 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK---------------------NLLHVTDTGVGMTREE 90 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT---------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCc---------------------eEEEEEECCCCCCHHH
Confidence 88899999998643 234455665554322 3489999999999999
Q ss_pred ccccccc
Q 007463 555 STSVAQL 561 (603)
Q Consensus 555 ~~~if~~ 561 (603)
+...|..
T Consensus 91 l~~~l~t 97 (269)
T 1qy5_A 91 LVKNLGT 97 (269)
T ss_dssp HHHHHHS
T ss_pred HHHHhhh
Confidence 7666543
No 91
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=94.22 E-value=0.032 Score=52.24 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcccCC--CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc
Q 007463 487 FQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (603)
Q Consensus 487 ~qvl~NLl~NAik~~~--~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (603)
.+++..|++||++..- ....|.|.+.. ++ .|+|.|||.|||.+..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~~--~g----------------------~i~V~DnG~GIp~~~~ 65 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILHA--DQ----------------------SLEVIDDGRGMPVDIH 65 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT--TS----------------------CEEEEECSSCCCCSBC
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEeC--CC----------------------EEEEEECCCCcCcccc
Confidence 6778888888887522 24567776632 21 3899999999999884
No 92
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=93.96 E-value=0.063 Score=50.05 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHhhcccC--CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCccc
Q 007463 482 DERRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (603)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~--~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (603)
++..+.+++..+++||++.. .....|.|.+...+ .++|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g------------------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN------------------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG------------------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC------------------------eEEEEECCCCccccc
Confidence 56778888888888888742 23567777765431 389999999999874
No 93
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=93.93 E-value=0.018 Score=56.42 Aligned_cols=44 Identities=9% Similarity=-0.121 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCCccccccccc----cccc----------cccCCCCCCCchHHHHHHH
Q 007463 540 RFEILLNEVGSQPEVSTSVAQ----LGIR----------RIVNEGIEDRMSFSVCKKL 583 (603)
Q Consensus 540 ~i~V~D~G~Gi~~e~~~~if~----~f~~----------~~~~~~~G~GLGL~i~k~i 583 (603)
.|.|.|||+||+++++...+. ...+ ......+..|+|++-|-.+
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v 151 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 151 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccc
Confidence 479999999999998754332 1110 1112346679998776544
No 94
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=93.81 E-value=0.014 Score=56.56 Aligned_cols=51 Identities=4% Similarity=0.055 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
-++..||.||.++.. .+..+.|.+....+. -.|.|.|||.||+++
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~---------------------~~I~I~DnG~GMt~e 121 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQD---------------------RTLTIVDTGIGMTKA 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT---------------------TEEEEEECSCCCCHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCc---------------------eEEEEecCCCCcCHH
Confidence 568888888887532 233456666544322 348999999999999
Q ss_pred cccccc
Q 007463 554 VSTSVA 559 (603)
Q Consensus 554 ~~~~if 559 (603)
++...|
T Consensus 122 dl~~~l 127 (256)
T 3o0i_A 122 DLINNL 127 (256)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 876554
No 95
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=93.77 E-value=0.041 Score=59.48 Aligned_cols=76 Identities=11% Similarity=0.010 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
.++..||.||+++.. +.+.+.|++....+. -.|+|.|||+||+.+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~---------------------~~I~I~DnGiGMt~e 88 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK---------------------RTLTISDNGVGMTRD 88 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT---------------------TEEEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC---------------------cEEEEEECCCCCCHH
Confidence 578899999998651 133334444433321 248999999999999
Q ss_pred cccccccccccc---------------ccCCCCCCCchHHHHHHHH
Q 007463 554 VSTSVAQLGIRR---------------IVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 554 ~~~~if~~f~~~---------------~~~~~~G~GLGL~i~k~iv 584 (603)
++...+....++ .....+..|+|++-+-.++
T Consensus 89 dl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (559)
T 1y4s_A 89 EVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (559)
T ss_dssp HHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHE
T ss_pred HHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhcc
Confidence 976654432111 1112345688887666553
No 96
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.034 Score=61.30 Aligned_cols=73 Identities=8% Similarity=-0.013 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
-++..||.||.++.. ..+.+.|++....+. -.|+|.|||+||+.+
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~---------------------~~I~I~DnGiGMt~e 87 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ---------------------KVLEIRDSGIGMTKA 87 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG---------------------TEEEEEECSCCCCHH
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC---------------------CEEEEEECCCCCCHH
Confidence 378889999998641 233344444443221 248999999999999
Q ss_pred cccccccccccc-------------ccCCCCCCCchHHHHH
Q 007463 554 VSTSVAQLGIRR-------------IVNEGIEDRMSFSVCK 581 (603)
Q Consensus 554 ~~~~if~~f~~~-------------~~~~~~G~GLGL~i~k 581 (603)
++...+....++ .....+..|+|++-|-
T Consensus 88 dl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf 128 (677)
T 2cg9_A 88 ELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLF 128 (677)
T ss_dssp HHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGG
T ss_pred HHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHh
Confidence 876655332111 0112356789987653
No 97
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=93.04 E-value=0.021 Score=54.69 Aligned_cols=46 Identities=4% Similarity=-0.115 Sum_probs=27.7
Q ss_pred EEEEEEEcCCCCCcccccccccc--------ccc-----cccCCCCCCCchHHHHHHHH
Q 007463 539 IRFEILLNEVGSQPEVSTSVAQL--------GIR-----RIVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 539 v~i~V~D~G~Gi~~e~~~~if~~--------f~~-----~~~~~~~G~GLGL~i~k~iv 584 (603)
-.|.|.|||+||+++++...+.. |.. ......+..|+|++-|-.+.
T Consensus 86 ~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~va 144 (239)
T 3nmq_A 86 RTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 144 (239)
T ss_dssp TEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccC
Confidence 34899999999999987433211 100 01112356789988765443
No 98
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=92.49 E-value=0.088 Score=54.55 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCccccc--------cccccccc-------cccCCCCCCCchHHHHHHHH
Q 007463 541 FEILLNEVGSQPEVST--------SVAQLGIR-------RIVNEGIEDRMSFSVCKKLV 584 (603)
Q Consensus 541 i~V~D~G~Gi~~e~~~--------~if~~f~~-------~~~~~~~G~GLGL~i~k~iv 584 (603)
|+|.|||.|||.+..+ -+|..... .+....+=.|.|++.|.-+-
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS 142 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALS 142 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhcc
Confidence 8999999999998742 33422111 11111223689999888775
No 99
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=92.03 E-value=0.055 Score=59.62 Aligned_cols=58 Identities=5% Similarity=0.068 Sum_probs=38.6
Q ss_pred EEecHHHHHHHHHHHHHhhcccCC--------------CCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEE
Q 007463 479 VMGDERRVFQVILHMVGSLLNCNS--------------RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEIL 544 (603)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~--------------~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~ 544 (603)
++.|+. -++..||.||+++.. ..+.+.|++....+. -.|+|.
T Consensus 42 LYsn~e---ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~---------------------~~I~I~ 97 (666)
T 2o1u_A 42 LYKNKE---IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK---------------------NLLHVT 97 (666)
T ss_dssp TSSSCT---THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT---------------------TEEEEE
T ss_pred ccCCch---HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC---------------------CEEEEE
Confidence 556664 578999999998641 133344554444322 238899
Q ss_pred EcCCCCCccccccccc
Q 007463 545 LNEVGSQPEVSTSVAQ 560 (603)
Q Consensus 545 D~G~Gi~~e~~~~if~ 560 (603)
|||+||+.+++..-+.
T Consensus 98 DnGiGMt~edl~~~l~ 113 (666)
T 2o1u_A 98 DTGVGMTREELVKNLG 113 (666)
T ss_dssp ECSCCCCHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHh
Confidence 9999999998766553
No 100
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=92.00 E-value=0.047 Score=59.88 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcccC--------------CCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcc
Q 007463 488 QVILHMVGSLLNCN--------------SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (603)
Q Consensus 488 qvl~NLl~NAik~~--------------~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (603)
.++..||.||+++. .+.+.+.|++....+. -.|+|.|||+||+.+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~---------------------~~I~I~DnGiGMt~e 88 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK---------------------RTLTISDNGVGMTRD 88 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT---------------------TEEEEEECSCCCCHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC---------------------cEEEEEECCCCCCHH
Confidence 57899999999875 1133344444433321 247999999999999
Q ss_pred ccccccc
Q 007463 554 VSTSVAQ 560 (603)
Q Consensus 554 ~~~~if~ 560 (603)
++...+.
T Consensus 89 dl~~~l~ 95 (624)
T 2ioq_A 89 EVIDHLG 95 (624)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765543
No 101
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=85.59 E-value=1.7 Score=51.26 Aligned_cols=78 Identities=9% Similarity=0.129 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhccc---CCCCcEEEEEEEeecCCCCccccccccccccCCCCceEEEEEEEEcCCCCCcccc------
Q 007463 485 RVFQVILHMVGSLLNC---NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS------ 555 (603)
Q Consensus 485 ~l~qvl~NLl~NAik~---~~~~g~i~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~------ 555 (603)
-|.+++..+|+||++- ......|.|.+..+++. |+|.|||.|||-+..
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~s-----------------------isV~DnGRGIPvd~h~~~~~~ 115 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHT-----------------------IEVKNDGKGIPIEIHNKENIY 115 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTTE-----------------------EEEEECSSCCCCSBCTTTCSB
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCCE-----------------------EEEEecCCcccccccCCCCCE
Confidence 4666677777777652 12224677777654332 899999999986643
Q ss_pred --cccccccc------c-cccCCCCCCCchHHHHHHHHH
Q 007463 556 --TSVAQLGI------R-RIVNEGIEDRMSFSVCKKLVQ 585 (603)
Q Consensus 556 --~~if~~f~------~-~~~~~~~G~GLGL~i~k~iv~ 585 (603)
+-+|.... . .+.-+++=.|.|.+.|.-+-+
T Consensus 116 ~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp HHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEE
T ss_pred eeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCC
Confidence 22333321 1 111223446999999987653
No 102
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=76.57 E-value=0.58 Score=44.95 Aligned_cols=44 Identities=11% Similarity=-0.115 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCCccccccccccccc--------------cccCCCCCCCchHHHHHHH
Q 007463 540 RFEILLNEVGSQPEVSTSVAQLGIR--------------RIVNEGIEDRMSFSVCKKL 583 (603)
Q Consensus 540 ~i~V~D~G~Gi~~e~~~~if~~f~~--------------~~~~~~~G~GLGL~i~k~i 583 (603)
.|.|.|||+||+.+++...+....+ ......+-.|+|++-|-.+
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV 188 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV 188 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc
Confidence 4899999999999998765432110 0011235679998876443
No 103
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=73.56 E-value=22 Score=29.76 Aligned_cols=116 Identities=12% Similarity=0.040 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhCCceEEEEeEcCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHHhcCCeEEeCCCchhhhccCCCc
Q 007463 189 LYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGES 268 (603)
Q Consensus 189 l~~~~~~l~~~l~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (603)
.+...+.+.+.+++ . |..-|.+ .+-...+.+.... .+ -++ .+...+++.+++..+.......... ...
T Consensus 4 a~~~AeiI~~~~~~-a--V~ItD~~--~ilA~~G~g~~~~--~~--~~i-s~~~~~~i~~~k~~~~~~~~~~~~~--~~~ 71 (123)
T 2w1r_A 4 AKEYADALYDSLGH-S--VLICDRD--VYIAVSGSSKKDY--LN--KSI-SEMLERTMDQRSSVLESDAKSVQLV--NGI 71 (123)
T ss_dssp HHHHHHHHHHHHCS-E--EEEECSS--BEEEEESSCHHHH--BT--CBB-CHHHHHHHHHCSCEEESSCEEEESB--TTC
T ss_pred HHHHHHHHHHHHCC-e--EEEEcCc--cEEEEEecChhhc--CC--Ccc-CHHHHHHHHcCCEEEEcCCcccccc--CCC
Confidence 34566778888888 3 4444443 3322222221111 11 244 4557789999998887443321111 011
Q ss_pred ccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHHHHH
Q 007463 269 VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLV 331 (603)
Q Consensus 269 ~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q~a~ 331 (603)
. -...+.+..|+...++. +|++.+. ...+.+++-+.++.+.+|.-++.
T Consensus 72 ~-~~~~s~ii~PI~~~g~v-------------iG~i~l~-~~~~~~~~~~~~la~gla~lls~ 119 (123)
T 2w1r_A 72 D-EDMNSYTVGPIVANGDP-------------IGAVVIF-SKDQTMGEVEHKAVETAAGFLAR 119 (123)
T ss_dssp E-EEESEEEEEEEEETTEE-------------EEEEEEE-ESSSCCCHHHHHHHHHHHHHHC-
T ss_pred C-CCeeEEEEEEEEECCEE-------------EEEEEEE-EcCCCCCHHHHHHHHHHHHHHHH
Confidence 1 13477899999866655 6676666 44455999999999988876654
No 104
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=61.64 E-value=11 Score=40.10 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=41.6
Q ss_pred HHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEc
Q 007463 163 MKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPN 211 (603)
Q Consensus 163 ~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~ 211 (603)
+++.+..+.+..+...|+.+.|..+++.+....+.+.++++++++|..+
T Consensus 313 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 313 ELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 4455566667788899999999999999999999999999999998754
No 105
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=45.71 E-value=1.1e+02 Score=28.41 Aligned_cols=141 Identities=10% Similarity=0.010 Sum_probs=74.9
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEcCC---CCeeEEEEEecCCCCCCC-CCceecCChhHHHHHhcC
Q 007463 174 MLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEI---KTEMNLTHQLNGRNYSDM-CSSIPITDQDVVRIKGSD 249 (603)
Q Consensus 174 ~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~~~---~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~ 249 (603)
++-.++..+.+.+++.... ..+.+.+|.+.+++...++. .....+...+.......+ ....-..||.+..+..+.
T Consensus 7 ~~~~~l~~a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~ 85 (237)
T 3szt_A 7 GYLEILSRITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEY 85 (237)
T ss_dssp SHHHHHHHCCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCC
Confidence 3455677777777777665 88999999999888654432 122333333332221111 112344578887888777
Q ss_pred CeEEeCCCchhh-hccCCCcccCCceeEEEecceeccccCCCcchhhhhcceeeEEEecCCCCcCCchHHHHHHHHHHHH
Q 007463 250 GVNILGPDSELA-AASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQ 328 (603)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~~~~ll~~~a~q 328 (603)
.+..-....... ..-.......|....+.+|+....+. .+++.+.... ..++.+++..+......
T Consensus 86 ~p~~W~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~g~-------------~g~ls~~~~~-~~~~~~~~~~~~~~~~~ 151 (237)
T 3szt_A 86 TPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGL-------------ISMLSLVRSS-ESIAATEILEKESFLLW 151 (237)
T ss_dssp SCEEEETTTCSSCHHHHHHHHHTTCCEEEEEEEECGGGC-------------EEEEEEEESS-SCCCHHHHHHHHHHHHH
T ss_pred CCEEeCCCCcccHHHHHHHHHHcCCCCEEEEEeeCCCCC-------------eEEEEEecCC-CcCCHHHHHHHHHHHHH
Confidence 776653221100 00001112467778899997633222 3344443332 35777776655444433
Q ss_pred H
Q 007463 329 V 329 (603)
Q Consensus 329 ~ 329 (603)
+
T Consensus 152 l 152 (237)
T 3szt_A 152 I 152 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=38.65 E-value=1.8e+02 Score=26.91 Aligned_cols=112 Identities=11% Similarity=0.127 Sum_probs=63.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH--HH
Q 007463 314 WSNQELEIVKVVADQVLVALSHAAVLEESQH--MREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHS--IL 389 (603)
Q Consensus 314 ~~~~~~~ll~~~a~q~a~al~~a~l~ee~~~--~~~~L~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHeLRtPL~~--I~ 389 (603)
+.+.+-.+...+..++....+-+.++.+.-. -.+..++. .++...-..++.+.+.+....+...+=||+-- |.
T Consensus 21 l~pke~~ff~ll~~~a~~v~~~a~~L~~~l~~~~~~~~~~~---~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~ 97 (227)
T 3l39_A 21 FTPKEPKFFPLLKQLSDVLSASSVLLVESMEHDLPTERADY---YKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIH 97 (227)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHH
Confidence 3344445566666666666666666555422 11222222 22222223344556666666666666666521 33
Q ss_pred HHHHHH--------------h---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007463 390 GLLSIM--------------Q---DVNLNSDQRMIVETMMKSSNVLSTLISDVMDN 428 (603)
Q Consensus 390 g~~~lL--------------~---~~~~~~~~~~~l~~i~~~~~~l~~li~~lld~ 428 (603)
.+++.+ . -...+++..++++.+.++++.+...++.+-++
T Consensus 98 ~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~ 153 (227)
T 3l39_A 98 DLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETF 153 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333222 1 13457778899999999999998888877554
No 107
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=33.52 E-value=38 Score=37.12 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeEc
Q 007463 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPN 211 (603)
Q Consensus 169 ~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~~ 211 (603)
.+....+...++...|....+.+....+.+.++++.+++|..+
T Consensus 326 ~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~ 368 (635)
T 4eho_A 326 QRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYED 368 (635)
T ss_dssp HHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETT
T ss_pred HHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECC
Confidence 3344456666777778888888888899999999999998743
No 108
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=33.35 E-value=1.3e+02 Score=31.83 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhCCceEEEEeE
Q 007463 163 MKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMP 210 (603)
Q Consensus 163 ~~~~~~~~~l~~lt~~i~~~~d~~~il~~~~~~l~~~l~~~~~~v~l~ 210 (603)
+++.+..+....+...++.+.|..+.+.+....+.+.++++.+++|.-
T Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~ 373 (520)
T 3zq5_A 326 DYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFG 373 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEEC
Confidence 334444455566778888888999999999999999999999999863
No 109
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=23.65 E-value=4e+02 Score=23.93 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=13.9
Q ss_pred HHHhhhhHHHHHHHhhHh
Q 007463 46 ETQKVSDFLIAVAYFSIP 63 (603)
Q Consensus 46 ~~~~~sd~~ia~a~~~i~ 63 (603)
..|.+.||.+|.++..+.
T Consensus 88 p~q~lldy~laf~~~Gla 105 (192)
T 3rlb_A 88 LSQAFLEYLVAPVSLGIA 105 (192)
T ss_dssp HHHHHHHHTHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 457788888888877766
No 110
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.97 E-value=1.2e+02 Score=17.33 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007463 148 LKKKAWDLGREVGIIMKQ 165 (603)
Q Consensus 148 l~~~~~~l~~~~~~~~~~ 165 (603)
+++++++|++++..+...
T Consensus 5 lkqknarlkqeiaaleye 22 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 456678888887765543
No 111
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.35 E-value=2.8e+02 Score=21.17 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007463 343 QHMREKLEEQNRALQQAQK 361 (603)
Q Consensus 343 ~~~~~~L~~~~~~L~~a~~ 361 (603)
+.+++++...+..++.++.
T Consensus 23 ~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARA 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444445444445555443
No 112
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=20.42 E-value=4.4e+02 Score=27.25 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=41.8
Q ss_pred HhhhhHHHHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHHHHHHhhHHHhHHhh----cCcchHHHHHHHHHHHHHHHHH
Q 007463 48 QKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWT----YGPHSFQLMLSLTVFKILTALV 123 (603)
Q Consensus 48 ~~~sd~~ia~a~~~i~~~l~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lt~lv 123 (603)
-....++.++.+..+....+|++....+.....+-++..++++.-.|-+..++. +-|.....-.+.++.+++.+++
T Consensus 382 e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~~s~p~itt~~D~~g~~~ 461 (473)
T 2zy9_A 382 EMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLI 461 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHHHHHH
Confidence 334445555555555555555543211222222223333333344444433332 2343333334688899999988
Q ss_pred HHHHHHHH
Q 007463 124 SCATSITL 131 (603)
Q Consensus 124 ~~~~ai~l 131 (603)
+|.+|-.+
T Consensus 462 ~~~~a~~~ 469 (473)
T 2zy9_A 462 YLSVARLL 469 (473)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887655
Done!