Query 007464
Match_columns 603
No_of_seqs 217 out of 975
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 02:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 1E-135 4E-140 1133.0 52.8 570 1-578 7-581 (581)
2 4b2g_A GH3-1 auxin conjugating 100.0 2E-134 6E-139 1127.2 45.7 579 3-587 12-598 (609)
3 4eql_A 4-substituted benzoates 100.0 3E-131 1E-135 1100.2 41.0 560 1-575 7-580 (581)
4 3qov_A Phenylacetate-coenzyme 99.9 2.7E-22 9.2E-27 217.2 25.1 378 23-532 18-420 (436)
5 2y4o_A Phenylacetate-coenzyme 99.9 7.4E-22 2.5E-26 214.2 24.5 381 23-532 24-426 (443)
6 2y27_A Phenylacetate-coenzyme 99.9 7.2E-22 2.5E-26 213.9 24.3 381 23-532 22-422 (437)
7 3e7w_A D-alanine--poly(phospho 99.6 8.7E-14 3E-18 153.5 25.1 134 289-450 256-419 (511)
8 3etc_A AMP-binding protein; ad 99.6 4.4E-14 1.5E-18 158.8 23.0 131 292-450 340-496 (580)
9 3hgu_A EHPF; phenazine, antibi 99.6 1.2E-13 4E-18 146.0 22.8 318 27-436 22-367 (369)
10 2d1s_A Luciferase, luciferin 4 99.6 1.1E-13 3.9E-18 154.2 23.6 133 292-450 308-462 (548)
11 3ni2_A 4-coumarate:COA ligase; 99.6 8E-14 2.7E-18 154.8 21.3 134 291-450 295-455 (536)
12 3fce_A D-alanine--poly(phospho 99.6 1E-13 3.4E-18 152.9 20.7 133 290-450 258-420 (512)
13 4fuq_A Malonyl COA synthetase; 99.6 2.3E-13 7.8E-18 150.0 22.8 134 290-450 265-420 (503)
14 3l8c_A D-alanine--poly(phospho 99.5 3.2E-14 1.1E-18 157.1 14.9 133 291-450 262-424 (521)
15 1mdb_A 2,3-dihydroxybenzoate-A 99.5 1.6E-13 5.5E-18 152.6 19.7 132 292-450 297-451 (539)
16 3kxw_A Saframycin MX1 syntheta 99.5 7.8E-14 2.7E-18 156.1 16.4 109 384-504 393-529 (590)
17 2v7b_A Benzoate-coenzyme A lig 99.5 5E-13 1.7E-17 147.9 22.1 129 294-450 301-450 (529)
18 3g7s_A Long-chain-fatty-acid-- 99.5 2.3E-13 7.8E-18 151.5 19.3 134 291-450 294-460 (549)
19 3nyq_A Malonyl-COA ligase; A/B 99.5 8.1E-13 2.8E-17 145.8 21.4 179 293-504 272-474 (505)
20 1t5h_X 4-chlorobenzoyl COA lig 99.5 9.7E-13 3.3E-17 144.8 21.8 133 292-450 271-423 (504)
21 3ivr_A Putative long-chain-fat 99.5 1.6E-13 5.5E-18 151.2 14.9 133 292-451 271-422 (509)
22 3c5e_A Acyl-coenzyme A synthet 99.5 1.8E-12 6.3E-17 145.2 23.6 131 292-450 321-477 (570)
23 3ite_A SIDN siderophore synthe 99.5 1.1E-13 3.7E-18 154.5 13.3 133 292-451 293-449 (562)
24 3rix_A Luciferase, luciferin 4 99.5 3.4E-13 1.1E-17 150.2 16.0 134 292-451 306-461 (550)
25 3gqw_A Fatty acid AMP ligase; 99.5 1.7E-12 5.7E-17 144.6 21.4 132 292-451 298-483 (576)
26 3r44_A Fatty acyl COA syntheta 99.5 8.6E-13 2.9E-17 145.9 17.3 129 292-450 283-434 (517)
27 1amu_A GRSA, gramicidin synthe 99.5 1.1E-12 3.8E-17 146.7 18.4 132 292-450 292-451 (563)
28 1pg4_A Acetyl-COA synthetase; 99.4 1.4E-12 4.9E-17 148.5 19.1 227 292-569 377-645 (652)
29 3rg2_A Enterobactin synthase c 99.4 2.6E-12 9E-17 145.2 20.4 133 291-450 300-455 (617)
30 3o83_A Peptide arylation enzym 99.4 2E-13 6.8E-18 151.9 10.8 133 292-451 306-461 (544)
31 1ry2_A Acetyl-coenzyme A synth 99.4 2.6E-12 9.1E-17 146.6 20.2 229 292-567 383-659 (663)
32 3ipl_A 2-succinylbenzoate--COA 99.4 4.9E-12 1.7E-16 138.9 21.5 123 294-450 275-419 (501)
33 4gr5_A Non-ribosomal peptide s 99.4 4.7E-13 1.6E-17 149.8 9.6 133 292-451 325-491 (570)
34 4gs5_A Acyl-COA synthetase (AM 99.4 1E-11 3.6E-16 131.2 17.5 124 292-453 147-274 (358)
35 3tsy_A Fusion protein 4-coumar 99.4 6.2E-12 2.1E-16 149.5 17.0 134 292-451 343-503 (979)
36 4dg8_A PA1221; ANL superfamily 99.4 1.3E-11 4.5E-16 139.8 18.8 133 292-450 275-440 (620)
37 1v25_A Long-chain-fatty-acid-C 99.3 1.2E-11 4.1E-16 137.4 14.8 130 293-451 293-457 (541)
38 2vsq_A Surfactin synthetase su 99.3 5.9E-11 2E-15 145.2 21.9 131 293-450 720-882 (1304)
39 3t5a_A Long-chain-fatty-acid-- 98.7 1E-07 3.5E-12 103.4 13.9 109 291-427 309-480 (480)
40 3lax_A Phenylacetate-coenzyme 97.5 0.00029 9.9E-09 60.9 8.2 90 427-532 2-93 (109)
41 3gxs_A Phenylacetate-coenzyme 97.3 0.00067 2.3E-08 58.8 8.1 90 426-532 1-93 (109)
42 2kvc_A Putative uncharacterize 26.2 69 0.0024 27.1 4.2 51 230-284 39-91 (103)
43 2j5a_A 30S ribosomal protein S 26.0 1.9E+02 0.0064 24.4 7.2 51 438-489 19-77 (110)
44 2m0n_A Putative uncharacterize 25.9 77 0.0026 27.2 4.6 53 231-284 42-100 (112)
45 2lky_A Uncharacterized protein 23.6 58 0.002 28.0 3.3 51 230-284 41-93 (112)
46 2fyx_A Transposase, putative; 23.0 3.7E+02 0.013 23.2 10.8 38 440-486 42-79 (143)
47 3ol3_A Putative uncharacterize 22.9 75 0.0026 27.1 3.9 53 231-284 45-100 (107)
48 2qmx_A Prephenate dehydratase; 22.0 3.9E+02 0.013 26.4 9.8 56 441-501 211-266 (283)
49 1cqm_A Ribosomal protein S6; a 20.9 1.7E+02 0.0059 24.2 5.8 48 438-486 13-67 (101)
50 2f5g_A Transposase, putative; 20.2 3.9E+02 0.013 22.5 9.9 86 440-538 32-122 (133)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-135 Score=1132.95 Aligned_cols=570 Identities=68% Similarity=1.166 Sum_probs=526.8
Q ss_pred CCccccCCChHHHHHHHHHHHhcHHHHHHHHHHHHHHHccCChhhHhcCCCCC-CChh-hhhhcCCCcccccchHHHHHH
Q 007464 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-SFKSCVPLVTHEDLQPYIQRI 78 (603)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~gf~~i-~s~~-dF~~~vPv~~Yed~~p~ieR~ 78 (603)
|+|||+.+++++.++.||+.++||.++|+++|++||++|++|+|||+|||++| ++++ |||++|||++|||++||||||
T Consensus 7 ~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi 86 (581)
T 4epl_A 7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRM 86 (581)
T ss_dssp ------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHH
T ss_pred hhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999 9999 999999999999999999999
Q ss_pred hcCCCCCCccCCCcceeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCC-CCceEEEeecccccccCCCC
Q 007464 79 IDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGL 157 (603)
Q Consensus 79 ~~Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~-~Gk~l~~~~~~~~~~t~~Gi 157 (603)
++||.++|||++||.+|++|||||+|++|+||+|+++++.+.+++.+|..++++.++++ .||.|+|++++.+..|++|+
T Consensus 87 ~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~~p~l~~~Gk~L~l~~~s~~~~t~~Gi 166 (581)
T 4epl_A 87 VDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGV 166 (581)
T ss_dssp HTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCCCTTCEEEEECCCCCCEECTTSC
T ss_pred HCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhhCCccccCCcEEEEeecCCcccCCCCc
Confidence 99998899999999999999999999999999999999988777888888887743388 89999988899999999999
Q ss_pred eEeccccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeecchhHHHHHHHHHHHHHHH
Q 007464 158 NAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237 (603)
Q Consensus 158 ~~g~~S~~~~~~~~f~~~~~~~~~~~~~P~e~~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~f~~~ll~~~~~l~~~w~~ 237 (603)
|+|++|++++++.+|++.|+|+...|++|.+++.++|..|++||||||||+++++|.+|+++||++|++++++|+++|++
T Consensus 167 ~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~ 246 (581)
T 4epl_A 167 PVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246 (581)
T ss_dssp EEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCchHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecChHHHHHHHHHHh
Q 007464 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYA 317 (603)
Q Consensus 238 l~~dI~~g~~~~~i~~~~~R~~l~~~l~~~p~~A~~l~~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~ 317 (603)
+|+||++|+++++++++++|++++++|+|+|++|++|+++|++.++|+|++++|||||++|+||++|+|.+|++++++++
T Consensus 247 l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~ 326 (581)
T 4epl_A 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYA 326 (581)
T ss_dssp HHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHH
T ss_pred HHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999872249999999999999999999999999999999999
Q ss_pred CCCCeeccccccCcccceecCCCCCCccccceeecCCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc
Q 007464 318 GDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN 397 (603)
Q Consensus 318 gg~~i~~~~YgaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt 397 (603)
|++|+++.+|+||||++|+|++|.|+++..+|+++|+.+||||||.+ +.++ +++++++++||+.|++|||||||
T Consensus 327 g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~--~~~~----~~~~~v~l~eve~G~~YelviTt 400 (581)
T 4epl_A 327 GDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS--ETGE----GEEKPVGLTQVKIGEEYEVVITN 400 (581)
T ss_dssp TTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------CCCEEGGGCCTTCEEEEEEES
T ss_pred CCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecc--cccC----CCCceeeHHHcCCCCeEEEEEee
Confidence 99999999999999999999999998877899999999999999987 4433 35789999999999999999999
Q ss_pred ccceeeceeCCEEEEeceeCCCCEEEEEeecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCce
Q 007464 398 VAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGH 477 (603)
Q Consensus 398 ~~GL~RYr~GDvvrv~g~~~~~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~h 477 (603)
++||||||+||+|+|+||+|++|+|+|+||++++||++|||++|++|++||.+|++.|.++|++|.|||+++|.++.|||
T Consensus 401 ~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~h 480 (581)
T 4epl_A 401 YAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH 480 (581)
T ss_dssp TTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCE
T ss_pred ccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999998887899999999999998888999
Q ss_pred EEEEEEeccCCCHHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccChHHHHHHHHhcCCCCCCCCCcCccc--C
Q 007464 478 YVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCV--G 555 (603)
Q Consensus 478 y~l~vE~~~~~~~~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~--~ 555 (603)
|++|||+.+.++.+++++||..||++|.|++|+.+|+.|+|+||+|++|++|+|++|+++++++|+++||||+|||+ +
T Consensus 481 yv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~~~ 560 (581)
T 4epl_A 481 YAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPS 560 (581)
T ss_dssp EEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCCTT
T ss_pred EEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeecCC
Confidence 99999998778878999999999999779999999999999999999999999999999999999999999999999 7
Q ss_pred CCCHHHHHHHhcccceEEeccCC
Q 007464 556 PTNKTVLQILCNNIGIEIFSGSL 578 (603)
Q Consensus 556 ~~~~~~~~~l~~~~~~~~~s~~~ 578 (603)
+++++++|+++|+++|||+++
T Consensus 561 --~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 561 --NAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp --CHHHHHHHHTTEEEEEECCCC
T ss_pred --CHHHHHHHHhcccccccCCCC
Confidence 999999999999999999875
No 2
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=1.7e-134 Score=1127.18 Aligned_cols=579 Identities=39% Similarity=0.702 Sum_probs=526.5
Q ss_pred ccccCCChHHHHHHHHHHHhcHHHHHHHHHHHHHHHccCChhhHhcCCCCCCChhhhhhcCCCcccccchHHHHHHhcCC
Q 007464 3 EKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGD 82 (603)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~gf~~i~s~~dF~~~vPv~~Yed~~p~ieR~~~Ge 82 (603)
+++..+++++.++.||+.++||.++|+++|++||++|++|+|||+|||++|++++||+++|||++|||++||||||++||
T Consensus 12 ~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~ieRi~~Ge 91 (609)
T 4b2g_A 12 GPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIANGD 91 (609)
T ss_dssp ----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHHHHHHHTTC
T ss_pred hhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHHHHHHhcCC
Confidence 45556777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCcceeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeecccccccCCCCeEec
Q 007464 83 ISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGT 161 (603)
Q Consensus 83 ~~~lL~~~pi~~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p-~~~Gk~l~~~~~~~~~~t~~Gi~~g~ 161 (603)
.++|||++||.+|++|||||+|++|+||+|+++++.+.+++++|..++++++| ++.||.|+|++++.+.+|++|+|+|+
T Consensus 92 ~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g~ 171 (609)
T 4b2g_A 92 RSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARP 171 (609)
T ss_dssp CSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTSCEEEC
T ss_pred CCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCCccccc
Confidence 77999999999999999999999999999999999887789999999999999 78899999888999999999999999
Q ss_pred cccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeecchhHHHHHHHHHHHHHHHHHHH
Q 007464 162 ATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDD 241 (603)
Q Consensus 162 ~S~~~~~~~~f~~~~~~~~~~~~~P~e~~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~f~~~ll~~~~~l~~~w~~l~~d 241 (603)
+|++++++.+|+++|..+...|++|.+++.++|..|++||||||||+++++|+.|+++|+++|++++++|+++|+++|+|
T Consensus 172 ~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~d 251 (609)
T 4b2g_A 172 VLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHD 251 (609)
T ss_dssp HHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988866677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCchHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecChHHHHHHHHHHhCCCC
Q 007464 242 IREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLP 321 (603)
Q Consensus 242 I~~g~~~~~i~~~~~R~~l~~~l~~~p~~A~~l~~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~gg~~ 321 (603)
|++|+++++++++++|.++.++|+|+|++|++|+++|++. +|.|++++|||||++|+||++|||.+|++++++++|++|
T Consensus 252 I~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~-~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~~p 330 (609)
T 4b2g_A 252 IRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKD-NWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGLP 330 (609)
T ss_dssp HHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSS-CCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTSCC
T ss_pred HHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCC-ccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999985 799999999999999999999999999999999999999
Q ss_pred eeccccccCcccceecCCCCCCccccceeecCCceEEEEEeCCCCCccccc-ccCCCccccccccCCCCeEEEEEccccc
Q 007464 322 LMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQV-LCIEPKPVGLTEVKVGEEYEIIVTNVAG 400 (603)
Q Consensus 322 i~~~~YgaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~-~~~~~~~v~l~eve~G~~yELVvTt~~G 400 (603)
+++++|+||||++|+|++|.|+++..+|+++|+.+||||||++ +.+... ..+++++|+++|||.|++|||||||++|
T Consensus 331 ~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~--~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~G 408 (609)
T 4b2g_A 331 LACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHE--HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAG 408 (609)
T ss_dssp EECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGG--GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTTS
T ss_pred cccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEecc--ccccccccCCCCccccHhHcCCCCeEEEehhhhhh
Confidence 9999999999999999999998877899999999999999987 431000 1146889999999999999999999999
Q ss_pred eeeceeCCEEEEeceeCCCCEEEEEeecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEE
Q 007464 401 LYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVI 480 (603)
Q Consensus 401 L~RYr~GDvvrv~g~~~~~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l 480 (603)
|||||+||+|+|+||++++|+|+|+||.+++||++||||+|++|++||.+|++.|+++|++|.|||+++|.++.||||++
T Consensus 409 L~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~ 488 (609)
T 4b2g_A 409 LYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVI 488 (609)
T ss_dssp CCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEE
T ss_pred hhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999998777899999999999998888999999
Q ss_pred EEEec-----cCCCHHHHHHHHHHHHHhccChhhHHHh-hcCCcCCeEEEEeccChHHHHHHHHhcCCCCCCCCCcCccc
Q 007464 481 FWEVS-----GEVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCV 554 (603)
Q Consensus 481 ~vE~~-----~~~~~~~l~~~~~~ld~~L~n~~Y~~~R-~~g~l~p~~v~~v~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~ 554 (603)
|||+. ..++++++++||..||++| |++|+.+| ..++|+||+|++|++|+|++|+++++++|+++||||+|||+
T Consensus 489 ~wEl~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~~ 567 (609)
T 4b2g_A 489 YWELLVKDSANSPSDELLGQCCLAMEESL-NSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCV 567 (609)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHS-CHHHHHHHHTSCCSCCCEEEEECTTCSCC----------------CCSSC
T ss_pred EEEEecccccCCCCHHHHHHHHHHHHHHh-CHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCccc
Confidence 99995 3366789999999999997 99999999 55699999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccceEEeccCCCCcccceEE
Q 007464 555 GPTNKTVLQILCNNIGIEIFSGSLGLLIVNCVI 587 (603)
Q Consensus 555 ~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~ 587 (603)
+ +++++++|+++|+++|||+++|+|.|.+.-
T Consensus 568 ~--~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~ 598 (609)
T 4b2g_A 568 N--FTPIMELLDSRVVSSHFSPALPHWTPARRR 598 (609)
T ss_dssp C----CCHHHHHTTEEEEEECCSCCCCCSCCC-
T ss_pred C--CHHHHHHHHhcccccccCCCCCCCCcccch
Confidence 9 999999999999999999999999998753
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=2.8e-131 Score=1100.16 Aligned_cols=560 Identities=39% Similarity=0.703 Sum_probs=469.1
Q ss_pred CCccccCCChHHHHHHHHHHHhcHHHHHHHHHHHHHHHccCChhhHhcCCCCCCChhhhhhcCCCcccccchHHHHHHhc
Q 007464 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIID 80 (603)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~gf~~i~s~~dF~~~vPv~~Yed~~p~ieR~~~ 80 (603)
|+|+... +++.++.||++++||.++|+++|++||++|++|+|||+| |++|++++|||++|||++|||++||||||++
T Consensus 7 ~~~~~~~--~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-f~~i~~~~~F~~~VPi~~Yedl~pyIeRi~~ 83 (581)
T 4eql_A 7 MKPIFDI--NETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLDRVVN 83 (581)
T ss_dssp ---------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT-TCCSCCHHHHHHHSCCBCHHHHHHHHHHHHT
T ss_pred cccccCC--cHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH-hhcCCCHHHHHHhCCCccHHHHHHHHHHHHc
Confidence 7777654 467789999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCccCCCcceeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeecccccccCCCCeE
Q 007464 81 GDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNA 159 (603)
Q Consensus 81 Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p-~~~Gk~l~~~~~~~~~~t~~Gi~~ 159 (603)
||.++|||++||.+|++|||||+|++|+||+|+++++.+.+++++|..++++++| ++.||.|+|++.+.+.+|++|+|+
T Consensus 84 Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~ 163 (581)
T 4eql_A 84 GESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPA 163 (581)
T ss_dssp TCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEE
T ss_pred CCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeee
Confidence 9966999999999999999999999999999999999888789999999999999 888999998888888999999999
Q ss_pred eccccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeecchhHHHHHHHHHHHHHHHHH
Q 007464 160 GTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELC 239 (603)
Q Consensus 160 g~~S~~~~~~~~f~~~~~~~~~~~~~P~e~~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~f~~~ll~~~~~l~~~w~~l~ 239 (603)
|++|++++++.+|+++|..+...|++|.+++.++|..|++||||||||+++++|+.|+++|+++|++++++|+++|+++|
T Consensus 164 g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~ 243 (581)
T 4eql_A 164 RVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELC 243 (581)
T ss_dssp ECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988666778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCchHHHHHhhccCC-CCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecChHHHHHHHHHHhC
Q 007464 240 DDIREGVLSSRITVPSIRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAG 318 (603)
Q Consensus 240 ~dI~~g~~~~~i~~~~~R~~l~~~l~-~~p~~A~~l~~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g 318 (603)
+||++|+++++++++++|.++..+++ |||++|++|+++|++. +|.|++++|||||++|+||++|||++|++++++++|
T Consensus 244 ~dI~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~-~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g 322 (581)
T 4eql_A 244 SNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQN-SWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCN 322 (581)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSS-CCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHT
T ss_pred HHHHhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCC-CccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcC
Confidence 99999999999999999999999997 9999999999999985 699999999999999999999999999999999999
Q ss_pred CCCeeccccccCcccceecCCCCCCccccceeecCCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEccc
Q 007464 319 DLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV 398 (603)
Q Consensus 319 g~~i~~~~YgaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt~ 398 (603)
++|+++++|+||||++|+|++|.|+++..+|+++|+.+||||||.+ +. +++++++++|||.|++|||||||+
T Consensus 323 ~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~--~~------~~~~~v~l~eVe~G~~YelViTt~ 394 (581)
T 4eql_A 323 DLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMD--GG------DKNDVVDLEDVKLGCTYEPVVTNF 394 (581)
T ss_dssp TCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECS--TT------CCSSCEEGGGCCTTCEEEEEEECS
T ss_pred CCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEecc--cc------CCCcEeCHHHcCCCceEEEEEeec
Confidence 9999999999999999999999998877899999999999999987 43 257899999999999999999999
Q ss_pred cceeeceeCCEEEEeceeCCCCEEEEEeecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceE
Q 007464 399 AGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHY 478 (603)
Q Consensus 399 ~GL~RYr~GDvvrv~g~~~~~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy 478 (603)
+||||||+||+|+|+||++++|+|+|+||.+++||++|||++|++|++||.+|++.|+++|++|.|||+++|.++.||||
T Consensus 395 ~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy 474 (581)
T 4eql_A 395 AGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHY 474 (581)
T ss_dssp SSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEEEECSSSSBEE
T ss_pred cceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999976667899999999999988889999
Q ss_pred EEEEEecc-----------CCCHHHHHHHHHHHHHhccChhhHHHh-hcCCcCCeEEEEeccChHHHHHHHHhcCCCCCC
Q 007464 479 VIFWEVSG-----------EVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALS 546 (603)
Q Consensus 479 ~l~vE~~~-----------~~~~~~l~~~~~~ld~~L~n~~Y~~~R-~~g~l~p~~v~~v~~GtF~~~~~~~~~~G~~~~ 546 (603)
++|||+.. .++++++++||..||++| |++|+++| +.++|+||+|++|++|+|++|+++++++|+++|
T Consensus 475 ~~~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~g 553 (581)
T 4eql_A 475 VVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESL-DNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTG 553 (581)
T ss_dssp EEECC---------------CCHHHHHHHHHHHHHTS-CHHHHHHHHTTCCBCCCEEEC---------------------
T ss_pred EEEEEEecccccccccccCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCC
Confidence 99999852 255679999999999998 99999999 556999999999999999999999999999999
Q ss_pred CCCcCcccCCCCHHHHHHHhcccceEEec
Q 007464 547 QFKTPRCVGPTNKTVLQILCNNIGIEIFS 575 (603)
Q Consensus 547 Q~K~Pr~~~~~~~~~~~~l~~~~~~~~~s 575 (603)
|||+|||++ +++++++|+++|+++|||
T Consensus 554 Q~K~PR~~~--~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 554 QYKTPRCIK--SGKALQVLETCVVAKFFS 580 (581)
T ss_dssp -------------------------CEEC
T ss_pred CcCCCcccC--CHHHHHHHHhcchheeec
Confidence 999999999 999999999999999998
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.90 E-value=2.7e-22 Score=217.19 Aligned_cols=378 Identities=15% Similarity=0.180 Sum_probs=221.1
Q ss_pred cHHHHHHHHHHHHHHHccCChhhHhc----CCC--CCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccC---CCcc
Q 007464 23 DAERIQRETLRKILEENASAEYLQNL----GLN--GRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTG---KPIT 93 (603)
Q Consensus 23 ~~~~~Q~~~L~~iL~~n~~T~ygr~~----gf~--~i~s~~dF~~~vPv~~Yed~~p~ieR~~~Ge~~~lL~~---~pi~ 93 (603)
+.++.|.+.|+++++..++++|+|++ |+. .|.+.+||+ ++|++++++++.... ...++. +.+.
T Consensus 18 ~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p-------~~~~~~~~~~~~a 89 (436)
T 3qov_A 18 KLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP-------FGLVAGDMKRDGV 89 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT-------TTTCCSCHHHHEE
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC-------CccccCCCcCCeE
Confidence 46789999999999877999999974 664 688999998 799999999875321 112221 3355
Q ss_pred eeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhh
Q 007464 94 TISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFK 173 (603)
Q Consensus 94 ~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~Gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~f~ 173 (603)
+...||||| |+||-++.|...+......+.. ....+.+..+..+. ...+ -+...|..
T Consensus 90 ~i~~TSGTT-G~PK~v~~th~~~~~~~~~~~~----~~~~~~~~~~d~~~-~~~~------~~~~~~~~----------- 146 (436)
T 3qov_A 90 RIHSSSGTT-GNPTVIVHSQHDLDSWANLVAR----CLYMVGIRKTDVFQ-NSSG------YGMFTGGL----------- 146 (436)
T ss_dssp EEEECSCSS-SCCCEEEEEHHHHHHHHHHHHH----HHHHTTCCTTSEEE-ECSC------CTTCHHHH-----------
T ss_pred EEEECCCcC-CCCeEEEECHHHHHHHHHHHHH----HHHHcCCCCCCEEE-ECcc------cccchhHH-----------
Confidence 778899999 8999999998876443222111 11112233333222 1100 00000000
Q ss_pred hhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeecchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 007464 174 AEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITV 253 (603)
Q Consensus 174 ~~~~~~~~~~~~P~e~~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~i~~ 253 (603)
...+..+..|. .+ ++...+ +-+.+++.|++..++-
T Consensus 147 -----------------------~~~~~~l~~G~----~~-~~~~~~-------------~~~~~~~~i~~~~~t~---- 181 (436)
T 3qov_A 147 -----------------------GFQYGAERLGC----LT-VPAAAG-------------NSKRQIKFISDFKTTA---- 181 (436)
T ss_dssp -----------------------HHHHHHHHHTC----EE-ECCCSC-------------CHHHHHHHHHHHTCCE----
T ss_pred -----------------------HHHHHHHHcCC----EE-EeCCCC-------------CHHHHHHHHHHHCCCE----
Confidence 00011111111 00 000011 1133445555444432
Q ss_pred hHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccC
Q 007464 254 PSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSS 330 (603)
Q Consensus 254 ~~~R~~l~~~l~~~p~~A~~l~~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaS 330 (603)
+.+ .|..+..|.+...+. +. ..-.++++ .+++|| ....++++++.+ |++++ +.||+|
T Consensus 182 ------~~~----~P~~~~~l~~~~~~~----~~-~~~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~T 241 (436)
T 3qov_A 182 ------LHA----IPSYAIRLAEVFQEE----GI-DPRETTLK---TLVIGAEPHTDEQRRKIERML-NVKAY-NSFGMT 241 (436)
T ss_dssp ------EEC----CHHHHHHHHHHHHHT----TC-CTTSSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEEG
T ss_pred ------EEE----CHHHHHHHHHHHHHc----CC-CcccCCcc---EEEEeCCcCCHHHHHHHHHHh-CccEE-ecCcch
Confidence 111 234444443332221 11 11246788 667776 366778888888 68999 999999
Q ss_pred cc-cceecCCCCCCccccceeecCCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEccc----cceeece
Q 007464 331 EG-WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV----AGLYRYR 405 (603)
Q Consensus 331 Eg-~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt~----~GL~RYr 405 (603)
|+ .+++... |+. ..++++..++..+|+++++ +++ .|++|+.|||+|++. ....||+
T Consensus 242 E~~~~~~~~~--~~~-~~g~~~~~~~~~v~i~d~~-----------~g~-----~~~~g~~Gel~v~~~~~~~~~~~~y~ 302 (436)
T 3qov_A 242 EMNGPGVAFE--CQE-QNGMHFWEDCYLVEIIDPE-----------TGE-----PVPEGEIGELVLTTLDREMMPLIRYR 302 (436)
T ss_dssp GGTEEEEEEE--CTT-CSSEEECTTTEEEEEECTT-----------TCS-----BCSTTCCEEEEEEESSCCSSCCCSEE
T ss_pred hhcCCeeEEe--cCC-CCeeEEccCceEEEEEECC-----------CCC-----CCCCCCceEEEEeccCcCCceEEEEE
Confidence 97 4333322 221 2456666567788988754 122 467899999999874 2366999
Q ss_pred eCCEEEEeceeCC----CCEE-EEEeecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEE
Q 007464 406 LGDVVKVMGFHNS----TPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVI 480 (603)
Q Consensus 406 ~GDvvrv~g~~~~----~P~i-~f~gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l 480 (603)
|||+++++...|. .|++ .|+||.+|+|+++|++|++.+||++|.+. .++. ..+.+..+........++
T Consensus 303 TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~v~-~~~vv~~~~~~~~~~l~a 375 (436)
T 3qov_A 303 TRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PELG-SNYLITLETVNNQDEMIV 375 (436)
T ss_dssp EEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TTEE-EEEEEEEEEETTEEEEEE
T ss_pred cCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cCcC-CcEEEEEEcCCCCcEEEE
Confidence 9999999864333 2345 99999999999999999999999999753 2322 123333222122345668
Q ss_pred EEEeccCCC---HHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccChHH
Q 007464 481 FWEVSGEVN---DEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (603)
Q Consensus 481 ~vE~~~~~~---~~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~GtF~ 532 (603)
+|+.. +.. ....+++.+.+.+.| +.| .--|..|.+|..+.|.
T Consensus 376 ~v~~~-~~~~~~~~~~~~l~~~l~~~l--~~~-------~~~p~~i~~v~~~~lP 420 (436)
T 3qov_A 376 EVELS-DLSTDNYIELEKIRRDIIRQL--KDE-------ILVTPKVKLVKKGSLP 420 (436)
T ss_dssp EEEEC-TTCCCCHHHHHHHHHHHHHHH--HHH-------HSSCCEEEEECTTCCC
T ss_pred EEEEc-CccccchhhHHHHHHHHHHHH--HHh-------cCCceEEEEeCCCccc
Confidence 88886 422 112344444555554 111 1246689999988776
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.89 E-value=7.4e-22 Score=214.19 Aligned_cols=381 Identities=17% Similarity=0.123 Sum_probs=217.6
Q ss_pred cHHHHHHHHHHHHHHH-ccCChhhHhc----CC--CCCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccCCCccee
Q 007464 23 DAERIQRETLRKILEE-NASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI 95 (603)
Q Consensus 23 ~~~~~Q~~~L~~iL~~-n~~T~ygr~~----gf--~~i~s~~dF~~~vPv~~Yed~~p~ieR~~~Ge~~~lL~~~pi~~f 95 (603)
+.++.|.+.|+++|+. .++++|++++ |+ ..|.+.+||+ ++|+++|++++.... .+. .-...+.+.+.
T Consensus 24 ~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~~~~~~~~~i 97 (443)
T 2y4o_A 24 ELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FGL--FAVPREQVVRV 97 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TTT--CSSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Ccc--cCCChhheEEE
Confidence 4678999999999997 5899999985 54 4688999998 899999999864321 010 11233446678
Q ss_pred eccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhhhh
Q 007464 96 SRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 175 (603)
Q Consensus 96 ~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~Gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~f~~~ 175 (603)
..||||| |+||.+++|...+........... ..+.+..+..+. ...+ -+...+..
T Consensus 98 ~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~~~d~~l-~~~~------~~~~~~~~------------- 152 (443)
T 2y4o_A 98 HASSGTT-GKPTVVGYTARDIDTWANVTARSI----RAAGGRPGDTLH-NAFG------YGLFTGGL------------- 152 (443)
T ss_dssp EEECCSS-SSCEEEEECHHHHHHHHHHHHHHH----HHTTCCTTCEEE-ECSC------CSSSHHHH-------------
T ss_pred EECCCCC-CCceEEecCHHHHHHHHHHHHHHH----HHcCCCCCCEEE-Eecc------CcccccHH-------------
Confidence 8899999 899999999887654332211111 112233333222 1100 00000000
Q ss_pred hhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeecchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCchH
Q 007464 176 MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPS 255 (603)
Q Consensus 176 ~~~~~~~~~~P~e~~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~i~~~~ 255 (603)
...+..++.|. .+-.+ ..+ +.+++++.|++..+.-
T Consensus 153 ---------------------~~~~~~~~~G~----~~~~~-~~~-------------~~~~~~~~i~~~~~t~------ 187 (443)
T 2y4o_A 153 ---------------------GIHYGAERLGC----MVVPM-SGG-------------QTEKQVQLIRDFEPKI------ 187 (443)
T ss_dssp ---------------------HHHHHHHHHTC----EEECC-CSC-------------CHHHHHHHHHHHCCSE------
T ss_pred ---------------------HHHHHHHHcCC----EEEEC-CCC-------------CHHHHHHHHHHhCCcE------
Confidence 00011111110 00000 000 1233445555444422
Q ss_pred HHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcc
Q 007464 256 IRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEG 332 (603)
Q Consensus 256 ~R~~l~~~l~~~p~~A~~l~~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg 332 (603)
+.+ .|..+..|.+...+. + .-. -+++++ .+++|| ....++++++.+ |++++ +.||+||+
T Consensus 188 ----l~~----~Ps~~~~l~~~~~~~-~---~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~ 249 (443)
T 2y4o_A 188 ----ILV----TPSYMLNLIDEMVRQ-G---MDP-AESSLK---IGIFGAEPWTQALRNEVETRV-GIDAL-DIYGLSEV 249 (443)
T ss_dssp ----EEE----CHHHHHHHHHHHHHT-T---CCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TCEEE-EEEEETTT
T ss_pred ----EEE----CHHHHHHHHHHHHHc-C---CCc-ccCCce---EEEECCCcCCHHHHHHHHHHh-CcCEE-eccCchhh
Confidence 222 233444443332211 1 111 246788 666666 366778888888 68999 99999995
Q ss_pred -cceecCCCCCCccccceeecCCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEccccc----eeeceeC
Q 007464 333 -WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----LYRYRLG 407 (603)
Q Consensus 333 -~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt~~G----L~RYr~G 407 (603)
..++... |+....++++..++..+|+++++ +++ .|+.|+.|||+||+... +.||+||
T Consensus 250 ~g~~~~~~--~~~~~~g~~~~~~~~~~~i~d~~-----------~g~-----~~~~G~~Gel~v~~~t~~~~p~~~y~TG 311 (443)
T 2y4o_A 250 MGPGVACE--CVETKDGPVIWEDHFYPEIIDPV-----------TGE-----VLPDGSQGELVFTSLTKEAMPVIRYRTR 311 (443)
T ss_dssp TEEEEEEE--CTTTCCSEEECTTTEEEEEECTT-----------TCC-----BCCTTCCEEEEEEESSCSSSCCSSEEEE
T ss_pred cCCeEEec--cCCCCCceEEccCCeEEEEEcCC-----------CCC-----CCCCCCceEEEEeCCCcccChhheeecC
Confidence 3222221 22211256665567788988754 122 45689999999997532 5699999
Q ss_pred CEEEEecee-C-CCCEE-EEEeecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEe
Q 007464 408 DVVKVMGFH-N-STPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEV 484 (603)
Q Consensus 408 Dvvrv~g~~-~-~~P~i-~f~gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l~vE~ 484 (603)
|+++++. . + ..|++ .|+||.+|+|+++|++|++.+||++|.+. .++. ..+.+..+........+++|+.
T Consensus 312 Dl~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~~~a~v~~ 383 (443)
T 2y4o_A 312 DLTALLP-PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLS-GQFQITLSRDGHMDRLDLAVEL 383 (443)
T ss_dssp EEECEEC-CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEE-EEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEcC-CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcC-ccEEEEEecCCCCceEEEEEEE
Confidence 9999986 3 2 23566 89999999999999999999999999753 2321 1233322211122455677887
Q ss_pred cc--C--CCHHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccChHH
Q 007464 485 SG--E--VNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (603)
Q Consensus 485 ~~--~--~~~~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~GtF~ 532 (603)
.. + .+....+++.+.+.+.| ....--|.+|.+|..+.|.
T Consensus 384 ~~~~~~~~~~~~~~~l~~~l~~~l---------~~~~~~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 384 RSEAAASVTDGERAALARELQHRI---------KTMVGVSSGVTVLAAGGIP 426 (443)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHH---------HHHTCCCCEEEEECTTCSC
T ss_pred CCcccccchhhHHHHHHHHHHHHH---------HHHhCCceEEEEeCCCccc
Confidence 53 1 12223344444444443 1111135678888877765
No 6
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.89 E-value=7.2e-22 Score=213.89 Aligned_cols=381 Identities=15% Similarity=0.135 Sum_probs=219.0
Q ss_pred cHHHHHHHHHHHHHHH-ccCChhhHhc----CC--CCCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccCCCccee
Q 007464 23 DAERIQRETLRKILEE-NASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI 95 (603)
Q Consensus 23 ~~~~~Q~~~L~~iL~~-n~~T~ygr~~----gf--~~i~s~~dF~~~vPv~~Yed~~p~ieR~~~Ge~~~lL~~~pi~~f 95 (603)
+.++.|.+.|+++|+. .++++|++++ |+ ..+.+.+||+ ++|+++|++++.... .+ -.-...+.+.++
T Consensus 22 ~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~--~~~~~~~~~~~i 95 (437)
T 2y27_A 22 ELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FG--MFAVPQDRISRI 95 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TT--TCSSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Cc--cccCChhHeEEE
Confidence 4678999999999997 5899999985 54 4588999998 799999998864321 01 011223446678
Q ss_pred eccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhhhh
Q 007464 96 SRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 175 (603)
Q Consensus 96 ~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~Gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~f~~~ 175 (603)
..||||| |+||.+++|...+........... ..+.+..+..+. ...+ .+...+. .
T Consensus 96 ~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~~~d~~~-~~~~----------~~~~~~~---------~ 150 (437)
T 2y27_A 96 HASSGTT-GKPTVVGYTAADIDTWANLVARSI----RAAGARRGDKVH-VSYG----------YGLFTGG---------L 150 (437)
T ss_dssp EECCCTT-SSCCEEEECHHHHHHHHHHHHHHH----HHTTCCTTCEEE-ECSC----------CSSSHHH---------H
T ss_pred EECCCCC-CCceEEecCHHHHHHHHHHHHHHH----HHcCCCCCCEEE-Eccc----------ccccccc---------h
Confidence 8899999 899999999887654332211111 112233333222 1100 0000000 0
Q ss_pred hhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEe-ecchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCch
Q 007464 176 MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVF-STFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVP 254 (603)
Q Consensus 176 ~~~~~~~~~~P~e~~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~-~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~i~~~ 254 (603)
...+..++.|. .++. ..+ +.+.+++.|++..+.-
T Consensus 151 ---------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t~----- 185 (437)
T 2y27_A 151 ---------------------GAHYGAERAGL------TVIPFGGG-------------QTEKQVQLIQDFRPDI----- 185 (437)
T ss_dssp ---------------------HHHHHHHHTTC------EEECCCSC-------------CHHHHHHHHHHHCCSE-----
T ss_pred ---------------------HHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHhCCCE-----
Confidence 00011111110 0110 000 1234455555554432
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCc
Q 007464 255 SIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSE 331 (603)
Q Consensus 255 ~~R~~l~~~l~~~p~~A~~l~~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSE 331 (603)
+.+ .|..+..|.+...+. +.-. -+++++ .+++|| ....++++++.+ |++++ +.||+||
T Consensus 186 -----l~~----~Ps~~~~l~~~~~~~----~~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE 246 (437)
T 2y27_A 186 -----IMV----TPSYMLSIADEIERQ----GLDP-VQSSLR---IGIFGAEPWTNDMRVAIEQRM-GIDAV-DIYGLSE 246 (437)
T ss_dssp -----EEE----CHHHHHHHHHHHHHT----TCCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEETT
T ss_pred -----EEE----CHHHHHHHHHHHHHc----CCCc-ccCCee---EEEEcCccCCHHHHHHHHHHH-CcCEE-ecCCchh
Confidence 222 234444443332211 1111 156788 666666 366778888888 68999 9999999
Q ss_pred c-cceecCCCCCCccccceeecCCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEccccc----eeecee
Q 007464 332 G-WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----LYRYRL 406 (603)
Q Consensus 332 g-~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt~~G----L~RYr~ 406 (603)
+ ..++... |+....++++..++.++|+++++ +++ .|+.|+.|||+||+... +.||+|
T Consensus 247 ~~g~~~~~~--~~~~~~g~~~~~~~~~~~i~d~~-----------~g~-----~~~~g~~Gel~v~~~t~~~~~~~~y~T 308 (437)
T 2y27_A 247 VMGPGVASE--CVETKDGPTIWEDHFYPEIIDPE-----------TGE-----VLPDGELGELVFTSLTKEALPIIRYRT 308 (437)
T ss_dssp TTEEEEEEC--CTTTCSSCEECTTTEEEEEECTT-----------TCC-----BCCTTCCEEEEEEESSCSSSCCCSEEE
T ss_pred hcCCeeEEe--cCCCCCceeEccCceEEEEEcCC-----------CCC-----CCCCCCccEEEEecCCcCCchhheeec
Confidence 5 3323222 22211256665567889998764 122 45689999999997533 679999
Q ss_pred CCEEEEeceeC-CCCEE-EEEeecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEe
Q 007464 407 GDVVKVMGFHN-STPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEV 484 (603)
Q Consensus 407 GDvvrv~g~~~-~~P~i-~f~gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l~vE~ 484 (603)
||+++++...+ ..|++ .|+||.+|+|+++|++|++.+||++|.+. .++. ..+.+..+........+++|+.
T Consensus 309 GDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~l~a~v~~ 381 (437)
T 2y27_A 309 RDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ------RALA-PHYQIVLTKEGPLDVLTLNVEP 381 (437)
T ss_dssp EEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC------TTBC-SCCEEEEEEETTEEEEEEEECB
T ss_pred CCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhC------cCcC-ccEEEEEeecCCCceEEEEEEE
Confidence 99999986212 35677 89999999999999999999999999753 2321 1233322211122456678887
Q ss_pred ccCCC--HHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccChHH
Q 007464 485 SGEVN--DEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (603)
Q Consensus 485 ~~~~~--~~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~GtF~ 532 (603)
..+.. ....+++.+.+.+.| +.| .--|..|.+|..+.|.
T Consensus 382 ~~~~~~~~~~~~~l~~~l~~~l--~~~-------~~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 382 CPETAPDTAAIQVAKQALAYDI--KSL-------IGVTAVINVLPVNGIE 422 (437)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHH--HHH-------HCCCEEEEECCTTCSC
T ss_pred CCCccchhhhHHHHHHHHHHHH--HHh-------cCCceEEEEeCCCCcc
Confidence 54321 122334444444443 111 1145678888777764
No 7
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.60 E-value=8.7e-14 Score=153.47 Aligned_cols=134 Identities=17% Similarity=0.246 Sum_probs=93.7
Q ss_pred cccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecC---C----CCCCccccceeecCCceEE
Q 007464 289 PELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---N----PSLPPELATFAVLPNIGYF 358 (603)
Q Consensus 289 ~~lWP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~---~----~~~~~~~~~~~l~~~~~~~ 358 (603)
....++++ .++.|| .....+++++.+++++++ +.||+||+.+.+.. . ........|.. .|+ .-+
T Consensus 256 ~~~~~~l~---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~-~~~ 329 (511)
T 3e7w_A 256 QDLLPHAD---TFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGFA-KPD-MNI 329 (511)
T ss_dssp TTTCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEE-CTT-CEE
T ss_pred cccCCccc---EEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcce-eCC-CEE
Confidence 34567888 666666 366677788888889999 99999997542211 0 01111112332 232 334
Q ss_pred EEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee-----------------eceeCCEEEEeceeCC
Q 007464 359 EFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNS 418 (603)
Q Consensus 359 EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~-----------------RYr~GDvvrv~g~~~~ 418 (603)
+.++.+ ++ +|+.|+.|||+|++ +.||| +|+|||++++.
T Consensus 330 ~i~d~~------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~----- 387 (511)
T 3e7w_A 330 FIMDEE------------GQ-----PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ----- 387 (511)
T ss_dssp EEECTT------------SC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-----
T ss_pred EEECCC------------CC-----CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-----
Confidence 444432 22 56789999999975 34554 69999999884
Q ss_pred CCEEEEEeecCceEeeeeeecCHHHHHHHHHH
Q 007464 419 TPELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 419 ~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
...+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 388 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 419 (511)
T 3e7w_A 388 DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQ 419 (511)
T ss_dssp TTEEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred CCeEEEEccccCEEEECCEEeCHHHHHHHHHh
Confidence 47899999999999999999999999999985
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.60 E-value=4.4e-14 Score=158.75 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=94.6
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCccccceeecCCceEEEEEeCCCC
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 366 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~--~~~~~~~~~l~~~~~~~EFip~~~~ 366 (603)
+++|+ .+++||. ....+++++.+ |++++ +.||+||+.+.+...+. ..++..|.. .| +.-+++++.+
T Consensus 340 l~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p-~~-~~~v~ivd~~-- 410 (580)
T 3etc_A 340 FSTLK---YAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGKP-TP-GYKIELMDRD-- 410 (580)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBEE-CT-TCEEEEECTT--
T ss_pred Cccce---EEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCccccC-CC-CCEEEEECCC--
Confidence 46788 6677772 56667777778 68999 99999998554332221 122333443 23 3345555432
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEccc--------cceee-------------ceeCCEEEEeceeCCCCEEEEE
Q 007464 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV--------AGLYR-------------YRLGDVVKVMGFHNSTPELKFI 425 (603)
Q Consensus 367 ~~~~~~~~~~~~~v~l~eve~G~~yELVvTt~--------~GL~R-------------Yr~GDvvrv~g~~~~~P~i~f~ 425 (603)
++ ++++|+.|||+|++. .|||+ |||||+++++. ...+.|+
T Consensus 411 ----------g~-----~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~----dG~l~~~ 471 (580)
T 3etc_A 411 ----------GR-----LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE----DGYLWFV 471 (580)
T ss_dssp ----------SC-----BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEE
T ss_pred ----------CC-----CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC----CCcEEEE
Confidence 22 567899999999852 45553 99999999985 6899999
Q ss_pred eecCceEeeeeeecCHHHHHHHHHH
Q 007464 426 CRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 426 gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
||.+|+|+++|++|++.|||++|.+
T Consensus 472 GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 472 GRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp EESSSCEEETTEEECHHHHHHHHTT
T ss_pred ecCCCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999875
No 9
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.58 E-value=1.2e-13 Score=146.03 Aligned_cols=318 Identities=12% Similarity=0.084 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHH-cc---CChhhHhc----CCC---CCCChhhhhhcCCCcccccchH-HHHHHhcCCCCCCccCCCcce
Q 007464 27 IQRETLRKILEE-NA---SAEYLQNL----GLN---GRTDPESFKSCVPLVTHEDLQP-YIQRIIDGDISPILTGKPITT 94 (603)
Q Consensus 27 ~Q~~~L~~iL~~-n~---~T~ygr~~----gf~---~i~s~~dF~~~vPv~~Yed~~p-~ieR~~~Ge~~~lL~~~pi~~ 94 (603)
.+++.|+++++. .+ +++|+|++ |++ .|++.+|++ ++|+++ ++++. +.+.+.. .. +..+.+.+
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~~a~ 95 (369)
T 3hgu_A 22 DTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPADSHPQ 95 (369)
T ss_dssp CHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTCCCE
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCccccEE
Confidence 577889999987 56 89999984 663 688999997 799999 99865 3332221 01 13455668
Q ss_pred eeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhhh
Q 007464 95 ISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKA 174 (603)
Q Consensus 95 f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~Gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~f~~ 174 (603)
...||||| |+||-+.+|...+...... .........+..+..+. ...+ -|...+.... .+
T Consensus 96 i~~TSGTT-G~PKgv~~t~~~~~~~~~~----~~~~~~~~~~~~~d~~l-~~~p------~g~~~~g~~~------~~-- 155 (369)
T 3hgu_A 96 VYESGGTT-GAPKYVVAYDAWIEALISW----RMSGYQHRPGRPSGNTL-AAIP------TGPHIVGAIN------KE-- 155 (369)
T ss_dssp EEEECC----CCEEEEECHHHHHHHHHH----HTTTTTTSTTCCCCEEE-ECSC------CTTCHHHHHH------HH--
T ss_pred EEECCCCC-CCCCEEEECHHHHHHHHHH----HHhhHHhhCCCCcceEE-EecC------CCchhhhHHH------HH--
Confidence 88999999 9999999998766432211 11011111122232221 1111 0000000000 00
Q ss_pred hhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeecchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCch
Q 007464 175 EMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVP 254 (603)
Q Consensus 175 ~~~~~~~~~~~P~e~~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~f~~~ll~~~~~l~~~w~~l~~dI~~g~~~~~i~~~ 254 (603)
.... . -..++ ..+..-.....+. .. ......-...+..++++++.|++..+.-....|
T Consensus 156 ~~~~----~--G~~v~-~~~~dp~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P 213 (369)
T 3hgu_A 156 RALR----L--GGMFF-SIDIDPRWVKRSL------------SE---GDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTP 213 (369)
T ss_dssp HHHH----T--TSCEE-CCCCCHHHHHHHH------------HT---TCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECH
T ss_pred HHHH----c--CCEEE-CccCChHHHHHhh------------cc---cchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCH
Confidence 0000 0 00000 0000000000000 00 000111112334445666677776664422222
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---hHHHHHHHH-HHhCCCCeeccccccC
Q 007464 255 SIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLR-HYAGDLPLMSADYGSS 330 (603)
Q Consensus 255 ~~R~~l~~~l~~~p~~A~~l~~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~---~~~y~~~l~-~~~gg~~i~~~~YgaS 330 (603)
..+..|.+... ....-.++++ .+++|| ....+++++ +.||+++++ +.||+|
T Consensus 214 --------------s~~~~l~~~~~-------~~~~~~~~lr---~i~~gGe~l~~~~~~~~~~~~~p~~~v~-~~YG~T 268 (369)
T 3hgu_A 214 --------------PVLRELLKRPE-------VVLQMKQSLA---QITLGGTELNLDEIKFIASEILPDCEFS-ASYGST 268 (369)
T ss_dssp --------------HHHHHHTTCHH-------HHHHHHHHCS---EEEEESSCCCHHHHHHHHHHTCTTSEEE-EEEEEG
T ss_pred --------------HHHHHHHhhhh-------hhccccCCee---EEEECCccCCHHHHHHHHHHhCCCcEEE-cccCch
Confidence 22222211000 0001134677 666666 367778888 888889999 999999
Q ss_pred cccceecCCCCCCccccceeec----CCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcccc---ceee
Q 007464 331 EGWIGANVNPSLPPELATFAVL----PNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA---GLYR 403 (603)
Q Consensus 331 Eg~~~i~~~~~~~~~~~~~~l~----~~~~~~EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt~~---GL~R 403 (603)
|+.... ..|+....|.++. ..+..++.++.+ +++ .|+.|+.|||+||+.. -+.|
T Consensus 269 E~~~~~---~~~~~~~~G~~~~~~~~~~~~~v~ivD~~-----------~g~-----~vp~G~~GEl~vt~l~~~~~l~r 329 (369)
T 3hgu_A 269 SALGVS---RSLLITSESQQVIYDSFSPFITYDVVDSI-----------TAQ-----TVEYGERGNVIVTHLSPWAFYPR 329 (369)
T ss_dssp GGTEEE---EECCBCTTCSSCEEECCTTTEEEEEECTT-----------TCS-----BCCTTCEEEEEEEEEETTEEEEE
T ss_pred hhhcce---eccccccCCCcccccCCCCCeEEEEECCC-----------CCc-----CCCCCCceEEEEEEcCccccccc
Confidence 975332 2232211344421 223566777653 123 4678999999999853 2899
Q ss_pred ceeCCEEEEeceeCCC-----CEEEEEeecCceEeeee
Q 007464 404 YRLGDVVKVMGFHNST-----PELKFICRRNLLLTINI 436 (603)
Q Consensus 404 Yr~GDvvrv~g~~~~~-----P~i~f~gR~~~~i~v~G 436 (603)
|+|||+++.....+.- --++.++|.++..++.|
T Consensus 330 y~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 330 VAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp EEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred ccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 9999999877543321 14455666555555544
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.58 E-value=1.1e-13 Score=154.16 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=96.5
Q ss_pred CCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCccccceeecCCceEEEEEeCCCC
Q 007464 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 366 (603)
Q Consensus 292 WP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~--~~~~~~~~~l~~~~~~~EFip~~~~ 366 (603)
+++|+ .+++|| ....++++++.+++++++ +.||+||+...+...+. ...+..|.. .| +.-++.++.+
T Consensus 308 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~~-~~-~~~~~i~d~~-- 379 (548)
T 2d1s_A 308 LSNLV---EIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGKV-VP-LFKAKVIDLD-- 379 (548)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBEE-CT-TCEEEEECTT--
T ss_pred cccee---EEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCcc-CC-CceEEEEeCC--
Confidence 46788 666676 366777888888778898 99999997543322221 112223332 23 3345666543
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEEEEeecC
Q 007464 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRRN 429 (603)
Q Consensus 367 ~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~f~gR~~ 429 (603)
+++ .|++|+.|||+|++ +.||| +|+|||+++++. ...+.|+||.+
T Consensus 380 ---------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~~ 441 (548)
T 2d1s_A 380 ---------TKK-----SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFFIVDRLK 441 (548)
T ss_dssp ---------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEEEEGG
T ss_pred ---------cCc-----cCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEEEecccc
Confidence 122 46789999999987 35665 599999999985 57899999999
Q ss_pred ceEeeeeeecCHHHHHHHHHH
Q 007464 430 LLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 430 ~~i~v~Gekv~e~~v~~av~~ 450 (603)
|+|+++|++|++.+||++|.+
T Consensus 442 d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 442 SLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp GCBCBTTCCBCHHHHHHHHHT
T ss_pred ceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999975
No 11
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.57 E-value=8e-14 Score=154.80 Aligned_cols=134 Identities=15% Similarity=0.138 Sum_probs=96.5
Q ss_pred cCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecC------CC-CCCccccceeecCCceEEEE
Q 007464 291 LFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANV------NP-SLPPELATFAVLPNIGYFEF 360 (603)
Q Consensus 291 lWP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~------~~-~~~~~~~~~~l~~~~~~~EF 360 (603)
-.++|+ .+++|| .....+++++.+++++++ +.||+||+...+.. .+ ...++..|..+ + +.-+++
T Consensus 295 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~-~~~~~i 368 (536)
T 3ni2_A 295 DLSSLR---MIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVV-R-NAEMKI 368 (536)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCEEC-S-SCEEEE
T ss_pred CCccce---EEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeEeC-C-CcEEEE
Confidence 356788 667676 366677788888889999 99999997532211 01 11122233322 2 334556
Q ss_pred EeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEE
Q 007464 361 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELK 423 (603)
Q Consensus 361 ip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~ 423 (603)
++.+ +++ .|+.|+.|||+|++ +.||| +|||||+++++. ...+.
T Consensus 369 ~d~~-----------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~----dG~l~ 428 (536)
T 3ni2_A 369 VDPE-----------TGA-----SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD----DDELF 428 (536)
T ss_dssp ECTT-----------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEE
T ss_pred EeCC-----------CCc-----CCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----CceEE
Confidence 6543 122 46789999999986 46666 499999999985 68899
Q ss_pred EEeecCceEeeeeeecCHHHHHHHHHH
Q 007464 424 FICRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 424 f~gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
|+||.+|+|+++|++|++.+||++|.+
T Consensus 429 ~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 429 IVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp EEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred EEecccceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999874
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.56 E-value=1e-13 Score=152.92 Aligned_cols=133 Identities=15% Similarity=0.182 Sum_probs=93.1
Q ss_pred ccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecCCCCC-------CccccceeecCCceEEE
Q 007464 290 ELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL-------PPELATFAVLPNIGYFE 359 (603)
Q Consensus 290 ~lWP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~~-------~~~~~~~~l~~~~~~~E 359 (603)
...|+++ .+++|| .....+++.+.+++++++ +.||+||+.+.+...+.. .....|.. .+ +.-+.
T Consensus 258 ~~~~~lr---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~-~~-~~~~~ 331 (512)
T 3fce_A 258 SMLPNMK---TFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC-KS-DCRLL 331 (512)
T ss_dssp TTSTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEE-CT-TCEEE
T ss_pred hhCcccc---EEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCccccc-cC-CcEEE
Confidence 3467888 666666 366677788888889999 999999975432110100 11112332 12 22334
Q ss_pred EEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee-----------------eceeCCEEEEeceeCCC
Q 007464 360 FIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNST 419 (603)
Q Consensus 360 Fip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~-----------------RYr~GDvvrv~g~~~~~ 419 (603)
.++.+ ++ .+++|+.|||+|++ +.||| +|+|||++++ . .
T Consensus 332 i~d~~------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~----d 389 (512)
T 3fce_A 332 IMKED------------GT-----IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-E----N 389 (512)
T ss_dssp EECSS------------SC-----BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-E----T
T ss_pred EECCC------------CC-----CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-c----C
Confidence 44322 22 45789999999976 46665 5999999988 3 4
Q ss_pred CEEEEEeecCceEeeeeeecCHHHHHHHHHH
Q 007464 420 PELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 420 P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
..+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 390 G~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~ 420 (512)
T 3fce_A 390 GLLFYNGRLDFQIKLHGYRMELEEIEHHLRA 420 (512)
T ss_dssp TEEEEEEEGGGCEEETTEEECHHHHHHHHHH
T ss_pred CEEEEecccCCEEEECCEEECHHHHHHHHHh
Confidence 7899999999999999999999999999975
No 13
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.55 E-value=2.3e-13 Score=150.02 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=95.3
Q ss_pred ccCCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCC--CCCccccceeecCCceEEEEEeCC
Q 007464 290 ELFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNP--SLPPELATFAVLPNIGYFEFIPQR 364 (603)
Q Consensus 290 ~lWP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~--~~~~~~~~~~l~~~~~~~EFip~~ 364 (603)
...++++ .+++||. ....+++++.+ +++++ +.||+||+.+...... ...++..|.. .| +.-++.++.+
T Consensus 265 ~~~~~lr---~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p-~~-~~~~~i~d~~ 337 (503)
T 4fuq_A 265 ETTGHMR---LFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVGPA-LP-GVSARVTDPE 337 (503)
T ss_dssp TTTTTCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEEEB-CT-TCEEEEECTT
T ss_pred cchhhcE---EEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCccccC-CC-CeEEEEEECC
Confidence 3456788 6677773 55666777777 58898 9999999854332111 1112222322 22 3345555543
Q ss_pred CCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEEEEee
Q 007464 365 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICR 427 (603)
Q Consensus 365 ~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~f~gR 427 (603)
+++ +|+.|+.|||+|++ ..||| +|||||+++++. ...+.|+||
T Consensus 338 -----------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR 397 (503)
T 4fuq_A 338 -----------TGK-----ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RGYVHILGR 397 (503)
T ss_dssp -----------TCC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TCEEEECCS
T ss_pred -----------CCC-----CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CCcEEEEec
Confidence 122 56789999999976 46776 399999999985 689999999
Q ss_pred cCceEeeeeeecCHHHHHHHHHH
Q 007464 428 RNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 428 ~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
.+|+|+++|++|++.|||++|.+
T Consensus 398 ~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 398 GKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp STTCEEETTEEECHHHHHHHHHT
T ss_pred CCCEEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999874
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.54 E-value=3.2e-14 Score=157.09 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=88.6
Q ss_pred cCCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC-------CCccccceeecCCceEEEE
Q 007464 291 LFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS-------LPPELATFAVLPNIGYFEF 360 (603)
Q Consensus 291 lWP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~-------~~~~~~~~~l~~~~~~~EF 360 (603)
-.|+++ .++.||. ....+++.+.+++++++ +.||+||+.+.+..... ......|.. .|+ .-.+.
T Consensus 262 ~~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p-~~~-~~~~i 335 (521)
T 3l8c_A 262 KMPALT---HFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGYP-KPD-SPTYI 335 (521)
T ss_dssp TCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEEE-CTT-SCEEE
T ss_pred cCccce---EEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCccccccc-cCC-CEEEE
Confidence 356788 6666662 55667777788789999 99999997543221000 011112332 222 23444
Q ss_pred EeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee-----------------eceeCCEEEEeceeCCCC
Q 007464 361 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNSTP 420 (603)
Q Consensus 361 ip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~-----------------RYr~GDvvrv~g~~~~~P 420 (603)
++.+ + .+|+.|+.|||+|++ +.||| +|+|||+++++. ..
T Consensus 336 ~d~~------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----dG 394 (521)
T 3l8c_A 336 IDED------------G-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----DN 394 (521)
T ss_dssp ECTT------------S-----CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----SS
T ss_pred ECCC------------c-----CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----CC
Confidence 4432 1 256789999999977 46665 599999999985 67
Q ss_pred EEEEEeecCceEeeeeeecCHHHHHHHHHH
Q 007464 421 ELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 421 ~i~f~gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
.+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 395 ~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 395 ILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp CEEEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred eEEEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 899999999999999999999999999875
No 15
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.53 E-value=1.6e-13 Score=152.56 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=93.2
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCC---CccccceeecCCceEEEEEeCCC
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL---PPELATFAVLPNIGYFEFIPQRL 365 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~ 365 (603)
.++|+ .+++||. ....+++++.+ +++++ +.||+||+.+.+...... ..+..|..+ ++..-+.+++.+
T Consensus 297 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~~i~d~~- 369 (539)
T 1mdb_A 297 LSSLQ---VLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRLDDPEEIIVNTQGKPM-SPYDESRVWDDH- 369 (539)
T ss_dssp CTTCC---EEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEES-STTCEEEEECTT-
T ss_pred cccee---EEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCCCCcHHhcCCCCCccc-CCCceEEEECCC-
Confidence 46788 6666663 55666777778 58888 999999986554321110 011233332 222234444322
Q ss_pred CCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEEEEeec
Q 007464 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRR 428 (603)
Q Consensus 366 ~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~f~gR~ 428 (603)
+ .+|++|+.|||+|++ +.||| +|||||+++++. ...+.|+||.
T Consensus 370 -----------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~ 429 (539)
T 1mdb_A 370 -----------D-----RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVVEGRA 429 (539)
T ss_dssp -----------S-----CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEEG
T ss_pred -----------C-----CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEEeccc
Confidence 1 256789999999976 36666 599999999985 6789999999
Q ss_pred CceEeeeeeecCHHHHHHHHHH
Q 007464 429 NLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 429 ~~~i~v~Gekv~e~~v~~av~~ 450 (603)
+|+|+++|++|++.+||++|.+
T Consensus 430 dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 430 KDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp GGCEECSSCEECHHHHHHHHTT
T ss_pred cceEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999974
No 16
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.53 E-value=7.8e-14 Score=156.10 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=73.7
Q ss_pred ccCCCCeEEEEEcc---cccee----------------------eceeCCEEEEeceeCCCCEEEEEeecCceEeeeeee
Q 007464 384 EVKVGEEYEIIVTN---VAGLY----------------------RYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDK 438 (603)
Q Consensus 384 eve~G~~yELVvTt---~~GL~----------------------RYr~GDvvrv~g~~~~~P~i~f~gR~~~~i~v~Gek 438 (603)
+++.|+.|||+|++ +.||| +|||||+++++. ..+.|+||.+|+|+++|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd-----G~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-----NELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET-----TEEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC-----CEEEEEcCccceEEECCEe
Confidence 56789999999977 45655 799999998872 5799999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhhcCCeeEeeEEe--ecCCCCCceEEEEEEeccCC-CHHHHHHHHHHHHHhc
Q 007464 439 NTEKDLQLSVDEAAQLLAEEKQEVVDFTSH--VDLSTDPGHYVIFWEVSGEV-NDEVLKECCNCLDRSF 504 (603)
Q Consensus 439 v~e~~v~~av~~a~~~l~~~g~~l~~f~~~--~~~~~~~~hy~l~vE~~~~~-~~~~l~~~~~~ld~~L 504 (603)
|++.+||++|..... ++...+..++ ++. ....-+++++..... +....+++.+.+.+.|
T Consensus 468 v~p~eIE~~l~~~~~-----~v~~~~~~v~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 468 HYPQDIEFSLMHSPL-----HHVLGKCAAFVIQEE--HEYKLTVMCEVKNRFMDDVAQDNLFNEIFELV 529 (590)
T ss_dssp THHHHHHHHHHHSGG-----GGGEEEEEEEEEEET--TEEEEEEEEEESCTTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCc-----cccCccEEEEEecCC--CCceEEEEEEeccccccchhHHHHHHHHHHHH
Confidence 999999999954422 3332223322 232 123455778775432 2333344444444443
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.52 E-value=5e-13 Score=147.93 Aligned_cols=129 Identities=11% Similarity=0.067 Sum_probs=89.6
Q ss_pred CCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcc-cceecCCC-CCCccccceeecCCceEEEEEeCCCCCc
Q 007464 294 NAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEG-WIGANVNP-SLPPELATFAVLPNIGYFEFIPQRLGNL 368 (603)
Q Consensus 294 ~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg-~~~i~~~~-~~~~~~~~~~l~~~~~~~EFip~~~~~~ 368 (603)
+++ .+++|| ....++++++.+ +++++ +.||+||+ .+.+...+ .+..+..|.. .| +.-++.++.+
T Consensus 301 ~lr---~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p-~~-~~~~~i~d~~---- 369 (529)
T 2v7b_A 301 AIR---ICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGRP-VP-GYEIELRDEA---- 369 (529)
T ss_dssp CCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCEE-CT-TCEEEEECTT----
T ss_pred ceE---EEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCcccC-CC-CCEEEEECCC----
Confidence 677 666666 366677788878 68999 99999997 33332211 1222223332 23 3445555532
Q ss_pred ccccccCCCccccccccCCCCeEEEEEcc---cccee-------------eceeCCEEEEeceeCCCCEEEEEeecCceE
Q 007464 369 ESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFICRRNLLL 432 (603)
Q Consensus 369 ~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~-------------RYr~GDvvrv~g~~~~~P~i~f~gR~~~~i 432 (603)
++ .|+.|+.|||+|++ ..||| +|+|||+++++. ...+.|+||.+|+|
T Consensus 370 --------g~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~dd~i 432 (529)
T 2v7b_A 370 --------GH-----AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSDDML 432 (529)
T ss_dssp --------SC-----BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCB
T ss_pred --------CC-----CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccCCeE
Confidence 22 46789999999987 46776 499999999985 67899999999999
Q ss_pred eeeeeecCHHHHHHHHHH
Q 007464 433 TINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 433 ~v~Gekv~e~~v~~av~~ 450 (603)
+++|++|++.+||++|.+
T Consensus 433 k~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 433 KVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp C----CBCHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 999999999999999875
No 18
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.52 E-value=2.3e-13 Score=151.54 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=81.7
Q ss_pred cCCCCceeeEEeecC---hHHHHHHHHHH----hC--CCCeeccccccCcccceecCCCC---CCccccceeecCCceEE
Q 007464 291 LFPNAKYLSGIMTGS---MEHYLKKLRHY----AG--DLPLMSADYGSSEGWIGANVNPS---LPPELATFAVLPNIGYF 358 (603)
Q Consensus 291 lWP~L~~i~~~~~G~---~~~y~~~l~~~----~g--g~~i~~~~YgaSEg~~~i~~~~~---~~~~~~~~~l~~~~~~~ 358 (603)
-+++++ .+.+|| .....+++.+. ++ +++++ +.||+||+...+...+. ......|.. .+ +.-+
T Consensus 294 ~~~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p-~~-~~~~ 367 (549)
T 3g7s_A 294 DWSYLK---VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQGVP-MS-DIEL 367 (549)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCCEE-CT-TCEE
T ss_pred Ccccee---EEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCcccc-CC-CCEE
Confidence 367788 667776 25555666655 53 27888 99999997543322211 111123332 22 3345
Q ss_pred EEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee------------------eceeCCEEEEeceeC
Q 007464 359 EFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY------------------RYRLGDVVKVMGFHN 417 (603)
Q Consensus 359 EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~------------------RYr~GDvvrv~g~~~ 417 (603)
+.++.+ +++ +|+.|+.|||+|++ +.||| +|||||+++++.
T Consensus 368 ~i~d~~-----------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~--- 428 (549)
T 3g7s_A 368 KVISLE-----------DGR-----ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE--- 428 (549)
T ss_dssp EEECSS-----------SCC-----EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT---
T ss_pred EEEeCC-----------CCc-----CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcC---
Confidence 666543 122 56789999999976 35655 799999999985
Q ss_pred CCCEEEEEeecCceEeeeeeecCHHHHHHHHHH
Q 007464 418 STPELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 418 ~~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
...+.|+||.+|+|+++|++|++.|||++|.+
T Consensus 429 -dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 429 -EGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp -TSCEEEEEEC------------CHHHHHHHTT
T ss_pred -CceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 68999999999999999999999999999875
No 19
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.50 E-value=8.1e-13 Score=145.78 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=107.3
Q ss_pred CCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCccccceeecCCceEEEEEeCCCCC
Q 007464 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLGN 367 (603)
Q Consensus 293 P~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~--~~~~~~~~~l~~~~~~~EFip~~~~~ 367 (603)
++++ .+++||. ....+++++.+ +++++ +.||+||+.+.....+. ...+..|.. .| +.-+++++.+
T Consensus 272 ~~lr---~i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~-~~~~~i~d~~--- 341 (505)
T 3nyq_A 272 AGAR---LLVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGVP-LP-GVELRLVEED--- 341 (505)
T ss_dssp HHCS---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEE-CT-TCEEEEC------
T ss_pred ccce---EEEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCcccC-CC-CCEEEEECCC---
Confidence 3567 6666662 55666777777 68999 99999998654432222 112223332 23 2334444432
Q ss_pred cccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEEEEeec-C
Q 007464 368 LESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRR-N 429 (603)
Q Consensus 368 ~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~f~gR~-~ 429 (603)
++.+. .+..|+.|||+|++ +.||| +|||||+++++. ...+.|+||. +
T Consensus 342 ---------g~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR~~d 406 (505)
T 3nyq_A 342 ---------GTPIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGRKAT 406 (505)
T ss_dssp -----------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEESSC
T ss_pred ---------CCCcc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCCccC
Confidence 12221 22348999999976 46776 399999999985 6889999998 5
Q ss_pred ceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeec-CCCCCceEEEEEEeccCCCHHHHHHHHHHHHHhc
Q 007464 430 LLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVD-LSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSF 504 (603)
Q Consensus 430 ~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~-~~~~~~hy~l~vE~~~~~~~~~l~~~~~~ld~~L 504 (603)
++++++|++|++.|||++|.+. .+ +.+..++.. .......-+.|+....+......+++.+.+.+.|
T Consensus 407 ~~ik~~G~~v~~~eIE~~l~~~------p~--V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L 474 (505)
T 3nyq_A 407 DLIKSGGYKIGAGEIENALLEH------PE--VREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARL 474 (505)
T ss_dssp CCEEETTEEECHHHHHHHHTTS------TT--EEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHT
T ss_pred ceEEeCCEEECHHHHHHHHHHC------cC--ccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhC
Confidence 9999999999999999998743 23 445554421 1111123345666543212223344445555554
No 20
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.50 E-value=9.7e-13 Score=144.83 Aligned_cols=133 Identities=13% Similarity=0.108 Sum_probs=92.2
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCCccccceeecCCceEEEEEeCCCCCc
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNL 368 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~ 368 (603)
.++|+ .+++||. ....+++++.+ +++++ +.||+||+.+.+... ....+..+.. .++ .-+..++.+
T Consensus 271 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~~~~~g~p-~~~-~~~~i~~~~---- 338 (504)
T 1t5h_X 271 LDSLR---HVTFAGATMPDAVLETVHQHL-PGEKV-NIYGTTEAMNSLYMR-QPKTGTEMAP-GFF-SEVRIVRIG---- 338 (504)
T ss_dssp CTTCC---EEEECCTTCCHHHHHHHHHHC-CSEEE-EEEEETTTEEEEEEE-SCSSSSEEBC-CTT-CCEEEECTT----
T ss_pred Ccccc---EEEEcCCcCCHHHHHHHHHhc-Cccee-eeecccccccccccc-CCCCCccccC-CCC-CceeEEecc----
Confidence 46788 6677763 56667788888 47888 999999984333211 1112212221 122 223334332
Q ss_pred ccccccCCCccccccccCCCCeEEEEEc-c---ccceee-------------ceeCCEEEEeceeCCCCEEEEEeecCce
Q 007464 369 ESQVLCIEPKPVGLTEVKVGEEYEIIVT-N---VAGLYR-------------YRLGDVVKVMGFHNSTPELKFICRRNLL 431 (603)
Q Consensus 369 ~~~~~~~~~~~v~l~eve~G~~yELVvT-t---~~GL~R-------------Yr~GDvvrv~g~~~~~P~i~f~gR~~~~ 431 (603)
+ ... ..|+.|+.|||+|+ . +.|||+ |||||+++++. ...+.|+||.+|+
T Consensus 339 ~-----~~~-----~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ 404 (504)
T 1t5h_X 339 G-----GVD-----EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRVDDM 404 (504)
T ss_dssp S-----CTT-----CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGC
T ss_pred C-----CCC-----CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcccCE
Confidence 1 011 24678999999998 4 367774 99999999985 6789999999999
Q ss_pred EeeeeeecCHHHHHHHHHH
Q 007464 432 LTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 432 i~v~Gekv~e~~v~~av~~ 450 (603)
|+++|++|++.+||++|.+
T Consensus 405 ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 405 IISGGENIHPSEIERVLGT 423 (504)
T ss_dssp EEETTEEECHHHHHHHHTT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999999874
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.49 E-value=1.6e-13 Score=151.15 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=75.9
Q ss_pred CCCCceeeEEeecChHHHHHHHHHHhCCCCeeccccccCcccceecC-CCCCCccccceeecCCceEEEEEeCCCCCccc
Q 007464 292 FPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANV-NPSLPPELATFAVLPNIGYFEFIPQRLGNLES 370 (603)
Q Consensus 292 WP~L~~i~~~~~G~~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~-~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~ 370 (603)
.++++ .+..||.....+++++.+++++++ +.||+||+...... .....+...|..+ + +.-++.++.+
T Consensus 271 l~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~p~-~-~~~~~i~d~~------ 338 (509)
T 3ivr_A 271 LASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGRPL-F-WRTVAVVDAE------ 338 (509)
T ss_dssp GTTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCEEC-T-TCEEEEECTT------
T ss_pred hhhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCcccccC-C-CcEEEEECCC------
Confidence 45677 667777777778888888889999 99999998542211 1111111233332 2 3345555432
Q ss_pred ccccCCCccccccccCCCCeEEEEEcc---ccceee-------------ceeCCEEEEeceeCCCCEEEEEeec--CceE
Q 007464 371 QVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR-------------YRLGDVVKVMGFHNSTPELKFICRR--NLLL 432 (603)
Q Consensus 371 ~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~R-------------Yr~GDvvrv~g~~~~~P~i~f~gR~--~~~i 432 (603)
+ .+|++|+.|||+|++ ..|||+ |||||+++++. .+.+.|+||. +|+|
T Consensus 339 ------~-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~d~i 403 (509)
T 3ivr_A 339 ------D-----RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEKELI 403 (509)
T ss_dssp ------S-----CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC------
T ss_pred ------C-----CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcceeE
Confidence 1 256789999999977 477874 99999999985 6889999999 9999
Q ss_pred eeeeeecCHHHHHHHHHHH
Q 007464 433 TINIDKNTEKDLQLSVDEA 451 (603)
Q Consensus 433 ~v~Gekv~e~~v~~av~~a 451 (603)
+++|++|++.+||++|.+.
T Consensus 404 k~~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 404 KTGGENVYPAEVEGALKQH 422 (509)
T ss_dssp -------------------
T ss_pred EECCEEECHHHHHHHHHhC
Confidence 9999999999999999864
No 22
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.49 E-value=1.8e-12 Score=145.21 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=93.0
Q ss_pred CCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCccccceeecCCceEEEEEeCCCC
Q 007464 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 366 (603)
Q Consensus 292 WP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~--~~~~~~~~~l~~~~~~~EFip~~~~ 366 (603)
.++|+ .+++|| ....++++++.+ +++++ +.||+||+.+.+...+. ..++..|.. .|+ .-++.++.+
T Consensus 321 ~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~-- 391 (570)
T 3c5e_A 321 FPHLQ---NCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGTA-ASC-YDVQIIDDK-- 391 (570)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEE-CTT-CCEEEECTT--
T ss_pred cccce---EEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCccccc-CCC-ceEEEECCC--
Confidence 46788 556665 356667777777 68998 99999998543322221 112223332 222 234555432
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEc-----c---cccee-------------eceeCCEEEEeceeCCCCEEEEE
Q 007464 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVT-----N---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFI 425 (603)
Q Consensus 367 ~~~~~~~~~~~~~v~l~eve~G~~yELVvT-----t---~~GL~-------------RYr~GDvvrv~g~~~~~P~i~f~ 425 (603)
++ .|+.|+.|||+|+ . +.||| +|+|||+++++. ...+.|+
T Consensus 392 ----------g~-----~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~~~ 452 (570)
T 3c5e_A 392 ----------GN-----VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQFM 452 (570)
T ss_dssp ----------SC-----BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEE
T ss_pred ----------CC-----CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEEEE
Confidence 22 4678999999997 3 35666 499999999985 6789999
Q ss_pred eecCceEeeeeeecCHHHHHHHHHH
Q 007464 426 CRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 426 gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
||.+|+|+++|++|++.+||++|.+
T Consensus 453 GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 453 GRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp EEGGGCEEETTEEECHHHHHHHHHT
T ss_pred ecCCCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999975
No 23
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.49 E-value=1.1e-13 Score=154.45 Aligned_cols=133 Identities=17% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecC---CCCCCccccceeecCCceEEEEEeCCC
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---NPSLPPELATFAVLPNIGYFEFIPQRL 365 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~---~~~~~~~~~~~~l~~~~~~~EFip~~~ 365 (603)
.++|+ .+++||. ....+++++.+ +++++ +.||+||+.+.... .+.......|.. .+ +.-...++.+
T Consensus 293 ~~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p-~~-~~~~~i~d~~- 364 (562)
T 3ite_A 293 APHLV---YLGVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTRCIGHP-LG-DSVAHVLAPG- 364 (562)
T ss_dssp STTCC---EEEEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTTEEEEE-CT-TCEEEEECTT-
T ss_pred cCceE---EEEEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCcccccc-CC-CCeEEEEeCC-
Confidence 56788 6666663 44455555545 68898 99999997543221 122222222332 22 2334444432
Q ss_pred CCcccccccCCCccccccccCCCCeEEEEEcc---cccee---------------eceeCCEEEEeceeCCCCEEEEEee
Q 007464 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------------RYRLGDVVKVMGFHNSTPELKFICR 427 (603)
Q Consensus 366 ~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~---------------RYr~GDvvrv~g~~~~~P~i~f~gR 427 (603)
+. .+|++|+.|||+|++ +.||| +|+|||+++++. ...+.|+||
T Consensus 365 ----------~~-----~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR 425 (562)
T 3ite_A 365 ----------SN-----EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLGR 425 (562)
T ss_dssp ----------SS-----CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEEE
T ss_pred ----------CC-----CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEcc
Confidence 11 246789999999976 46776 699999999985 689999999
Q ss_pred cCceEeeeeeecCHHHHHHHHHHH
Q 007464 428 RNLLLTINIDKNTEKDLQLSVDEA 451 (603)
Q Consensus 428 ~~~~i~v~Gekv~e~~v~~av~~a 451 (603)
.+|+|+++|++|++.|||++|.+.
T Consensus 426 ~dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 426 KDEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp C-----------------------
T ss_pred ccCEEeECcEEECHHHHHHHHHhc
Confidence 999999999999999999999864
No 24
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.47 E-value=3.4e-13 Score=150.23 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=71.4
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCC--CccccceeecCCceEEEEEeCCCC
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL--PPELATFAVLPNIGYFEFIPQRLG 366 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~~--~~~~~~~~l~~~~~~~EFip~~~~ 366 (603)
+++|+ .+++||. ....+++++.+|...++ +.||+||+...+...+.. .++..|.. .| +.-++.++.+
T Consensus 306 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~-~~-~~~~~i~d~~-- 377 (550)
T 3rix_A 306 LSNLH---EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKV-VP-FFEAKVVDLD-- 377 (550)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEE-CT-TCEEEEECTT--
T ss_pred ccccc---EEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccc-cC-CcEEEEEeCC--
Confidence 56788 6677773 66677788888533477 999999986543332222 12223332 23 3345566543
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEEEEeecC
Q 007464 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRRN 429 (603)
Q Consensus 367 ~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~f~gR~~ 429 (603)
+++ .+++|+.|||+|++ +.||| +|||||+++++. ...+.|+||.+
T Consensus 378 ---------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~GR~d 439 (550)
T 3rix_A 378 ---------TGK-----TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEHFFIVDRLK 439 (550)
T ss_dssp ---------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEC----
T ss_pred ---------CCc-----CCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----CceEEEEecch
Confidence 122 46789999999986 46666 499999999985 68999999999
Q ss_pred ceEeeeeeecCHHHHHHHHHHH
Q 007464 430 LLLTINIDKNTEKDLQLSVDEA 451 (603)
Q Consensus 430 ~~i~v~Gekv~e~~v~~av~~a 451 (603)
|+|+++|++|++.+||++|.+.
T Consensus 440 d~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 440 SLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp ----------------------
T ss_pred heeEECCEEECHHHHHHHHHhC
Confidence 9999999999999999999864
No 25
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.47 E-value=1.7e-12 Score=144.58 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=90.3
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhC-----CCCeeccccccCcccceecCCCCCCc-------------------
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAG-----DLPLMSADYGSSEGWIGANVNPSLPP------------------- 344 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~g-----g~~i~~~~YgaSEg~~~i~~~~~~~~------------------- 344 (603)
+++++ .++.||. ....+++.+.++ +++++ +.||+||+.+.+...+....
T Consensus 298 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (576)
T 3gqw_A 298 LSCWR---VAGIGAEPISAEQLHQFAECFRQVNFDNKTFM-PCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVA 373 (576)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEE-EEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCC
T ss_pred hhhhH---hhhccCccCCHHHHHHHHHHHhhcCCCccccc-ccCCcccccceeecccccCCccccccchhhhcccCcccc
Confidence 46788 6666762 555666766664 67888 99999998554332211100
Q ss_pred -c----------ccceeecCCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---ccceee-------
Q 007464 345 -E----------LATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR------- 403 (603)
Q Consensus 345 -~----------~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~R------- 403 (603)
+ ..|.. .|+ .-++.++.+ ++ +|..|+.|||+|++ ..|||.
T Consensus 374 ~~~~~~~~~~~~~~G~p-~~~-~~~~i~d~~------------g~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~ 434 (576)
T 3gqw_A 374 PGAETRAVSTFVNCGKA-LPE-HGIEIRNEA------------GM-----PVAERVVGHICISGPSLMSGYFGDQVSQDE 434 (576)
T ss_dssp CCTTCCCEEEEEBCCEE-CTT-CEEEEECTT------------SC-----BCCTTBCEEEEEESTTSCCCBTTCHHHHHH
T ss_pred cCccccCccceeecCCc-CCC-CeEEEECCC------------CC-----CCCCCCeEEEEEeCccccccccCCcccccc
Confidence 0 01221 122 223444321 22 46789999999976 477774
Q ss_pred ------ceeCCEEEEeceeCCCCEEEEEeecCceEeeeeeecCHHHHHHHHHHH
Q 007464 404 ------YRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 451 (603)
Q Consensus 404 ------Yr~GDvvrv~g~~~~~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~a 451 (603)
|||||++++ . ...+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 435 ~~~~g~~~TGDl~~~-~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 483 (576)
T 3gqw_A 435 IAATGWLDTGDLGYL-L----DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQE 483 (576)
T ss_dssp HHHHSCEEEEEEEEE-E----TTEEEEEEETTTCEEETTEEECHHHHHHHHTTS
T ss_pred ccCCCeeeccceEEE-E----CCEEEEEecCcceEEECCEEECHHHHHHHHHhC
Confidence 999999988 3 479999999999999999999999999998753
No 26
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.45 E-value=8.6e-13 Score=145.91 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=87.5
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecC-CC---CCCccccceeecCCceEEEEEeCC
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV-NP---SLPPELATFAVLPNIGYFEFIPQR 364 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~-~~---~~~~~~~~~~l~~~~~~~EFip~~ 364 (603)
.|+|+ .+++||. ....+++++. +++++ +.||+||+...... .+ ....+..+.. .+ +.-++.++.+
T Consensus 283 ~~~lr---~i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~-~~-~~~~~i~d~~ 354 (517)
T 3r44_A 283 APDFR---YFITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAGSAGRA-TM-FTDVAVRGDD 354 (517)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTTCCBEE-CT-TEEEEEECTT
T ss_pred CCccc---EEEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCCCCCcC-CC-CeEEEEECCC
Confidence 46788 6777773 4444555443 68998 99999997442211 11 1122223332 12 2223333321
Q ss_pred CCCcccccccCCCccccccccCCCCeEEEEEcc---cccee-------------eceeCCEEEEeceeCCCCEEEEEeec
Q 007464 365 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFICRR 428 (603)
Q Consensus 365 ~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~-------------RYr~GDvvrv~g~~~~~P~i~f~gR~ 428 (603)
+. .++.| .|||+|++ ..||| +|||||+++++. ...+.|+||.
T Consensus 355 ------------~~-----~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~ 412 (517)
T 3r44_A 355 ------------GV-----IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRL 412 (517)
T ss_dssp ------------SC-----EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECG
T ss_pred ------------CC-----CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCC
Confidence 22 34567 89999977 47777 499999999985 6899999999
Q ss_pred CceEeeeeeecCHHHHHHHHHH
Q 007464 429 NLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 429 ~~~i~v~Gekv~e~~v~~av~~ 450 (603)
+|+|+++|++|++.+||++|.+
T Consensus 413 dd~ik~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 413 KDMIISGGENVYPAEIESVIIG 434 (517)
T ss_dssp GGCEEETTEEECHHHHHHHHTT
T ss_pred cCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999874
No 27
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.45 E-value=1.1e-12 Score=146.73 Aligned_cols=132 Identities=12% Similarity=0.197 Sum_probs=87.1
Q ss_pred CCCCceeeEEeecChHHHHHHHHHHhCCCCeeccccccCcccce-ecC--CCCC--CccccceeecCCceEEEEEeCCCC
Q 007464 292 FPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIG-ANV--NPSL--PPELATFAVLPNIGYFEFIPQRLG 366 (603)
Q Consensus 292 WP~L~~i~~~~~G~~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~-i~~--~~~~--~~~~~~~~l~~~~~~~EFip~~~~ 366 (603)
.++++ .+++||.....+.++.+...++++ +.||+||+.+. ... .... .....|..+ |+ .-+..++.+
T Consensus 292 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~-~~-~~v~i~d~~-- 363 (563)
T 1amu_A 292 ILSIQ---TLITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAPI-QN-TQIYIVDEN-- 363 (563)
T ss_dssp CCSCS---EEEEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBEEC-TT-EEEEEECTT--
T ss_pred ccccc---EEEEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCccccee-CC-CEEEEECCC--
Confidence 35688 666666422222233444347888 99999997532 211 1111 111233332 32 234444322
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------------eceeCCEEEEeceeCCCCEEE
Q 007464 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------------RYRLGDVVKVMGFHNSTPELK 423 (603)
Q Consensus 367 ~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------------RYr~GDvvrv~g~~~~~P~i~ 423 (603)
++ .++.|+.|||+|++ +.||| +|+|||+++++. ...+.
T Consensus 364 ----------~~-----~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~ 424 (563)
T 1amu_A 364 ----------LQ-----LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIE 424 (563)
T ss_dssp ----------SC-----BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEE
T ss_pred ----------cC-----CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEE
Confidence 22 45789999999976 35665 799999999985 67899
Q ss_pred EEeecCceEeeeeeecCHHHHHHHHHH
Q 007464 424 FICRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 424 f~gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
|+||.+|+|+++|++|++.+||++|.+
T Consensus 425 i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 425 YLGRIDNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp EEEEGGGEEEETTEEEEHHHHHHHHTT
T ss_pred EeccccCEEEECCEEeCHHHHHHHHHh
Confidence 999999999999999999999999875
No 28
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.45 E-value=1.4e-12 Score=148.49 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=128.0
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhC--CCCeeccccccCcccceecCC-CC---CCccccceeecCCceEEEEEe
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAG--DLPLMSADYGSSEGWIGANVN-PS---LPPELATFAVLPNIGYFEFIP 362 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~g--g~~i~~~~YgaSEg~~~i~~~-~~---~~~~~~~~~l~~~~~~~EFip 362 (603)
.++|+ .+++||. ....+.+.+.+| +++++ +.||+||+...+... +. ..++..|.. .|+. -+..++
T Consensus 377 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p-~~g~-~v~i~d 450 (652)
T 1pg4_A 377 RSSLR---ILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATRP-FFGV-QPALVD 450 (652)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBSB-CTTC-CEEEEC
T ss_pred cCceE---EEEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCccccC-cCCC-eEEEEC
Confidence 46788 6666663 555666777774 28899 999999974322211 11 112223332 2322 233343
Q ss_pred CCCCCcccccccCCCccccccccCCCCeEEEEEcc-----cccee----------------eceeCCEEEEeceeCCCCE
Q 007464 363 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN-----VAGLY----------------RYRLGDVVKVMGFHNSTPE 421 (603)
Q Consensus 363 ~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt-----~~GL~----------------RYr~GDvvrv~g~~~~~P~ 421 (603)
.+ ++ +|+.|+.|||+|+. ..||| +|+|||+++++. ...
T Consensus 451 ~~------------g~-----~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG~ 509 (652)
T 1pg4_A 451 NE------------GH-----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGY 509 (652)
T ss_dssp TT------------CC-----BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSC
T ss_pred CC------------CC-----CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CCc
Confidence 22 22 45679999999987 24444 499999999985 688
Q ss_pred EEEEeecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEee--cCCCCCceEEEEEEeccC--CCHHHHHHHH
Q 007464 422 LKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHV--DLSTDPGHYVIFWEVSGE--VNDEVLKECC 497 (603)
Q Consensus 422 i~f~gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~--~~~~~~~hy~l~vE~~~~--~~~~~l~~~~ 497 (603)
+.|+||.+|+|+++|++|...|||++|.+. .+ |.+..++. +. .....-+.||.+..+ .+.+..+++.
T Consensus 510 l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~-~~g~~l~a~Vv~~~~~~~~~~~~~~l~ 580 (652)
T 1pg4_A 510 YWITGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHA-IKGQAIYAYVTLNHGEEPSPELYAEVR 580 (652)
T ss_dssp EEEEEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEET-TTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred EEEEecCCCEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEEcC-CCCeEEEEEEEECCCCCCCHHHHHHHH
Confidence 999999999999999999999999999742 23 44555442 21 111234467776543 2323334444
Q ss_pred HHHHHhccChhhHHHhhcCCcCCeEEEEec------cChHH--HHHHHHhcCCCCCCCCCcCcccCCCCHHHHHHHhccc
Q 007464 498 NCLDRSFVDAGYVSARKVNAIGPLELRVVL------KGTFQ--QILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNI 569 (603)
Q Consensus 498 ~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~------~GtF~--~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~~ 569 (603)
+.+.+.| +.| ..|-.|.+|. .|-.+ .+++.. .+. ..+.+.+--+. |++.++.+.+.+
T Consensus 581 ~~l~~~l--~~~--------~~P~~i~~v~~lP~T~sGKi~R~~L~~~~--~~~-~~~~~~~~~l~--~p~~~~~~~~~~ 645 (652)
T 1pg4_A 581 NWVRKEI--GPL--------ATPDVLHWTDSLPKTRSGKIMRRILRKIA--AGD-TSNLGDTSTLA--DPGVVEKLLEEK 645 (652)
T ss_dssp HHHHHHT--CGG--------GCCSEEEECSCCCBCTTSCBCHHHHHHHH--HTC-----------C--CTTHHHHHHHHH
T ss_pred HHHHHhC--CCC--------cCCeEEEEcCCCCCCCCccchHHHHHHHH--hCC-CCCCCCccccC--CHHHHHHHHHHh
Confidence 4454443 222 2355555553 23322 222222 121 12455556666 888888876644
No 29
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.44 E-value=2.6e-12 Score=145.16 Aligned_cols=133 Identities=12% Similarity=0.143 Sum_probs=93.4
Q ss_pred cCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecCCCCCC---ccccceeecCCceEEEEEeCC
Q 007464 291 LFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP---PELATFAVLPNIGYFEFIPQR 364 (603)
Q Consensus 291 lWP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~~~---~~~~~~~l~~~~~~~EFip~~ 364 (603)
-.++|+ .++.|| .....+++.+.+ +++++ +.||+||+.+......... ....+..+.++ .-+..++.+
T Consensus 300 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~~ 373 (617)
T 3rg2_A 300 QLASLK---LLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD-DEVWVADAE 373 (617)
T ss_dssp TTTTCC---EEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTT-CEEEEECTT
T ss_pred cCCCcc---EEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCCC-ceEEEECCC
Confidence 456788 666676 356666777777 58998 9999999865433211110 01123322232 233344322
Q ss_pred CCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEEEEee
Q 007464 365 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICR 427 (603)
Q Consensus 365 ~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~f~gR 427 (603)
++ .|+.|+.|||+|+. ..||| +|||||+++.+. ...+.|+||
T Consensus 374 ------------~~-----~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----dG~l~~~GR 432 (617)
T 3rg2_A 374 ------------GN-----PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----EGYITVQGR 432 (617)
T ss_dssp ------------SC-----BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEE
T ss_pred ------------CC-----CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----CceEEEEee
Confidence 22 56789999999976 46766 399999999985 688999999
Q ss_pred cCceEeeeeeecCHHHHHHHHHH
Q 007464 428 RNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 428 ~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
.+|+++++|++|.+.+||++|.+
T Consensus 433 ~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 433 EKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp CSSEEEETTEEEEHHHHHHHHTT
T ss_pred cCCEEEECCEEeCHHHHHHHHHh
Confidence 99999999999999999999875
No 30
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.44 E-value=2e-13 Score=151.95 Aligned_cols=133 Identities=15% Similarity=0.162 Sum_probs=74.0
Q ss_pred CCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecCCCCCC---ccccceeecCCceEEEEEeCCC
Q 007464 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP---PELATFAVLPNIGYFEFIPQRL 365 (603)
Q Consensus 292 WP~L~~i~~~~~G~---~~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~~~---~~~~~~~l~~~~~~~EFip~~~ 365 (603)
.++|+ .+++|| .....+++++.+ +++++ +.||+||+.+......... ....|..+.+ +.-++.++.+
T Consensus 306 ~~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~- 378 (544)
T 3o83_A 306 IQSLK---LLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS-DDEIKIVDEQ- 378 (544)
T ss_dssp HTTCC---EEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT-
T ss_pred CCcce---EEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecCC-CcEEEEECCC-
Confidence 45788 666666 256667787778 68998 9999999865443211110 0112333223 3334454422
Q ss_pred CCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEEEEeec
Q 007464 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRR 428 (603)
Q Consensus 366 ~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~f~gR~ 428 (603)
++ +|++|+.|||+|++ +.||| +|||||+++++. ...+.|+||.
T Consensus 379 -----------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~ 438 (544)
T 3o83_A 379 -----------YR-----EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DGNLRVVGRI 438 (544)
T ss_dssp -----------SC-----BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TSCEEEEEEE
T ss_pred -----------CC-----CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CCCEEEEeec
Confidence 12 56789999999977 35666 499999999985 6899999999
Q ss_pred CceEeeeeeecCHHHHHHHHHHH
Q 007464 429 NLLLTINIDKNTEKDLQLSVDEA 451 (603)
Q Consensus 429 ~~~i~v~Gekv~e~~v~~av~~a 451 (603)
+|+|+++|++|++.|||++|.+.
T Consensus 439 dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 439 KDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp C----------------------
T ss_pred CCEEEeCCEEECHHHHHHHHHhC
Confidence 99999999999999999999864
No 31
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.43 E-value=2.6e-12 Score=146.62 Aligned_cols=229 Identities=11% Similarity=0.106 Sum_probs=124.3
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhC--CCCeeccccccCcccce-ecCCC-C---CCccccceeecCCceEEEEE
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAG--DLPLMSADYGSSEGWIG-ANVNP-S---LPPELATFAVLPNIGYFEFI 361 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~g--g~~i~~~~YgaSEg~~~-i~~~~-~---~~~~~~~~~l~~~~~~~EFi 361 (603)
.++|+ .+++||. ....+.+.+.+| +++++ +.||+||+... +...+ . ..++..|.. .|+ .-++.+
T Consensus 383 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p-~~g-~~v~i~ 456 (663)
T 1ry2_A 383 LKSLR---CLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASFP-FFG-IDAVVL 456 (663)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCEE-CTT-CCEEEE
T ss_pred cCceE---EEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCccccC-cCC-CeEEEE
Confidence 46788 6777773 555666777674 38999 99999997432 21111 1 112223332 232 234445
Q ss_pred eCCCCCcccccccCCCccccccccCC-CCeEEEEEcc-----cccee----------------eceeCCEEEEeceeCCC
Q 007464 362 PQRLGNLESQVLCIEPKPVGLTEVKV-GEEYEIIVTN-----VAGLY----------------RYRLGDVVKVMGFHNST 419 (603)
Q Consensus 362 p~~~~~~~~~~~~~~~~~v~l~eve~-G~~yELVvTt-----~~GL~----------------RYr~GDvvrv~g~~~~~ 419 (603)
+.+ . ++ +|+. |+.|||+|+. ..||| +|+|||+++++. .
T Consensus 457 d~~---~--------g~-----~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~----d 516 (663)
T 1ry2_A 457 DPN---T--------GE-----ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----D 516 (663)
T ss_dssp CSS---S--------TT-----CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----T
T ss_pred cCC---C--------CC-----cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC----C
Confidence 431 1 22 3455 8999999987 24454 499999999985 6
Q ss_pred CEEEEEeecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecC-CCCCceEEEEEEeccCCC-----H---
Q 007464 420 PELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDL-STDPGHYVIFWEVSGEVN-----D--- 490 (603)
Q Consensus 420 P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~-~~~~~hy~l~vE~~~~~~-----~--- 490 (603)
..+.|+||.+|+|+++|++|...|||++|.+. .+ |.+..++... ......-+.||.+..+.. .
T Consensus 517 G~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~ 588 (663)
T 1ry2_A 517 GYIWILGRVDDVVNVSGHRLSTAEIEAAIIED------PI--VAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL 588 (663)
T ss_dssp CCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS------TT--EEEEEEECCCCCTTSCCCEEEEEEC------------C
T ss_pred CCEEEEeecCCEEEECCEEcCHHHHHHHHHhC------CC--cceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhH
Confidence 78999999999999999999999999999742 22 4565554321 111123346676643211 1
Q ss_pred -HHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEecc------ChHHHHHHHHhcCCCCCCCCCcCcccCCCCHHHHH
Q 007464 491 -EVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLK------GTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQ 563 (603)
Q Consensus 491 -~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~------GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~ 563 (603)
+..+++.+.+.+.| +. ...|-+|.+|+. |-..+-.=..+..+. ..+.+.+-.+. |++.++
T Consensus 589 ~~l~~~l~~~l~~~L--~~--------~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~-~~~~~~~~~l~--~p~~~~ 655 (663)
T 1ry2_A 589 QDIKKHLVFTVRKDI--GP--------FAAPKLIILVDDLPKTRSGKIMRRILRKILAGE-SDQLGDVSTLS--NPGIVR 655 (663)
T ss_dssp CSHHHHHHHHHHHHT--CT--------TTSCSEEEECSCCCBCTTSCBCHHHHHHSCC----------------CCHHHH
T ss_pred HHHHHHHHHHHHHhC--CC--------CcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC-CCCCCCccccc--CHHHHH
Confidence 12233333333332 11 234566666542 332221111112221 12566777777 888888
Q ss_pred HHhc
Q 007464 564 ILCN 567 (603)
Q Consensus 564 ~l~~ 567 (603)
.+.+
T Consensus 656 ~~~~ 659 (663)
T 1ry2_A 656 HLID 659 (663)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 32
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.43 E-value=4.9e-12 Score=138.87 Aligned_cols=123 Identities=14% Similarity=0.220 Sum_probs=83.4
Q ss_pred CCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccc-eecCCCC---CCccccceeecCCceEEEEEeCCCC
Q 007464 294 NAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWI-GANVNPS---LPPELATFAVLPNIGYFEFIPQRLG 366 (603)
Q Consensus 294 ~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~-~i~~~~~---~~~~~~~~~l~~~~~~~EFip~~~~ 366 (603)
+|+ .+++||. ....+++++ + +++++ +.||+||+.. .+...+. ..++..|..+ ++ .-++.++.
T Consensus 275 ~lr---~i~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~-~~-~~~~i~d~--- 343 (501)
T 3ipl_A 275 NLQ---KILLGGAKLSATMIETALQ-Y-NLPIY-NSFGMTETCSQFLTATPEMLHARPDTVGMPS-AN-VDVKIKNP--- 343 (501)
T ss_dssp TCC---EEEECSSCCCHHHHHHHHH-T-TCCEE-EEEEEGGGTEEEEEECHHHHHHCTTCCBEEC-TT-CEEEEESC---
T ss_pred ccc---EEEEeCCCCCHHHHHHHHH-h-CCCEe-ccccccccccceeecCccccccCCCCCCCCC-CC-cEEEEecC---
Confidence 688 6666663 445555555 4 68999 9999999643 2221111 0111122221 22 22222221
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc---ccceee------------ceeCCEEEEeceeCCCCEEEEEeecCce
Q 007464 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR------------YRLGDVVKVMGFHNSTPELKFICRRNLL 431 (603)
Q Consensus 367 ~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~R------------Yr~GDvvrv~g~~~~~P~i~f~gR~~~~ 431 (603)
..|+.|||+|+. ..|||. |+|||+++++. .+.+.|+||.+|+
T Consensus 344 -------------------~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 344 -------------------NKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRRKDL 400 (501)
T ss_dssp -------------------CSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEECCCC
T ss_pred -------------------CCCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccccce
Confidence 146789999976 467774 99999999975 6899999999999
Q ss_pred EeeeeeecCHHHHHHHHHH
Q 007464 432 LTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 432 i~v~Gekv~e~~v~~av~~ 450 (603)
|+++|++|++.+||+++.+
T Consensus 401 ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 401 IISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp EECSSCEECHHHHHHHHTT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999998874
No 33
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.39 E-value=4.7e-13 Score=149.77 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=70.0
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecC---CCC---CCccccceeecCCceEEEEEe
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---NPS---LPPELATFAVLPNIGYFEFIP 362 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~---~~~---~~~~~~~~~l~~~~~~~EFip 362 (603)
.++|+ .+++||. .....++.+.+++++++ +.||+||+...... ... ......|.. .+ +.-+..++
T Consensus 325 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~-~~~v~i~d 398 (570)
T 4gr5_A 325 FEGVR---YAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVP-LA-GKRAYVLD 398 (570)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEE-CT-TEEEEEEC
T ss_pred CCCce---EEEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCcccccee-eC-CCEEEEEC
Confidence 56788 6666763 45566677778789999 99999997432111 100 001112332 22 22333443
Q ss_pred CCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee----------------------eceeCCEEEEeceeC
Q 007464 363 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY----------------------RYRLGDVVKVMGFHN 417 (603)
Q Consensus 363 ~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~----------------------RYr~GDvvrv~g~~~ 417 (603)
.+ + .++..|+.|||+|++ +.||| +|||||+++++.
T Consensus 399 ~~------------~-----~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~--- 458 (570)
T 4gr5_A 399 DD------------L-----KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRA--- 458 (570)
T ss_dssp TT------------S-----CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT---
T ss_pred CC------------C-----CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC---
Confidence 21 1 256789999999976 46665 599999999985
Q ss_pred CCCEEEEEeecCceEeeeeeecCHHHHHHHHHHH
Q 007464 418 STPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 451 (603)
Q Consensus 418 ~~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~a 451 (603)
...+.|+||.+|+|+++|++|++.|||++|.+.
T Consensus 459 -dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 459 -DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp -TSCEEEEEC------------------------
T ss_pred -CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 689999999999999999999999999999864
No 34
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.36 E-value=1e-11 Score=131.17 Aligned_cols=124 Identities=14% Similarity=0.177 Sum_probs=80.9
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCCccccceeecCCceEEEEEeCCCCCc
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNL 368 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~ 368 (603)
.++|+ .+++||. ....+++++ + +++++ +.||+||+...+...+...+. . .... ++..
T Consensus 147 l~~lr---~v~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TEt~~~~~~~~~~~~~-~------g~~~---~~~p---- 206 (358)
T 4gs5_A 147 VDRLG---KVLLGGAPVNHALAMQISD-L-AMPVY-QSYGMTETVSHVALKALNGPE-A------SELY---VFLP---- 206 (358)
T ss_dssp GGGGC---SEEECSSCCCHHHHHHHHT-C-SSCEE-EEEECGGGSSEEEEEECSSTT-C------CSCE---EECT----
T ss_pred CCcce---EEEEcccCCCchheecccc-c-CceEE-eccccccccceeecccccccc-c------ceee---ccCC----
Confidence 45677 5566663 444455554 3 58999 999999975544332221110 0 0111 1221
Q ss_pred ccccccCCCccccccccCCCCeEEEEEccc-cceeeceeCCEEEEeceeCCCCEEEEEeecCceEeeeeeecCHHHHHHH
Q 007464 369 ESQVLCIEPKPVGLTEVKVGEEYEIIVTNV-AGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLS 447 (603)
Q Consensus 369 ~~~~~~~~~~~v~l~eve~G~~yELVvTt~-~GL~RYr~GDvvrv~g~~~~~P~i~f~gR~~~~i~v~Gekv~e~~v~~a 447 (603)
-.++..++.+||++... ..-.+|||||+++++. . .+.|+||.+|+|+++|++|++.+||++
T Consensus 207 -------------gv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~----~-g~~~~GR~dd~Ik~~G~~v~p~eIE~~ 268 (358)
T 4gs5_A 207 -------------GIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHG----N-AFQWIGRADNVINSGGVKIVLDQIDQR 268 (358)
T ss_dssp -------------TCEEEECTTSEEEEESGGGTTCCEEEEEEEEECS----S-EEEEEEEGGGEEEETTEEEEHHHHHHH
T ss_pred -------------CeEEEecCcCceEEecccccCcceecCCcccccc----C-ceEEcccccCeEEECCEEECHHHHHHH
Confidence 01344567789998753 2223689999999985 2 378899999999999999999999999
Q ss_pred HHHHHH
Q 007464 448 VDEAAQ 453 (603)
Q Consensus 448 v~~a~~ 453 (603)
|.....
T Consensus 269 l~~~~~ 274 (358)
T 4gs5_A 269 IAAVFH 274 (358)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 876543
No 35
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.35 E-value=6.2e-12 Score=149.50 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCC------CC-CCccccceeecCCceEEEEE
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVN------PS-LPPELATFAVLPNIGYFEFI 361 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~------~~-~~~~~~~~~l~~~~~~~EFi 361 (603)
.++|+ .+++||. ....+++++.+++++++ +.||+||+...+... +. ...+..|.. .| +.-++++
T Consensus 343 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p-~~-~~~~~i~ 416 (979)
T 3tsy_A 343 LSSIR---VVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTV-VR-NAEMKIV 416 (979)
T ss_dssp CTTCC---EEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEE-CS-SCEEEEE
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCcc-cC-CcEEEEE
Confidence 46788 6777773 55667788888889999 999999985432111 11 111222332 23 2345555
Q ss_pred eCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------eceeCCEEEEeceeCCCCEEEE
Q 007464 362 PQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKF 424 (603)
Q Consensus 362 p~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~~~P~i~f 424 (603)
+.+ +++ .|++|+.|||+|+. ..||| +|||||+++++. ...+.|
T Consensus 417 d~~-----------~~~-----~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~ 476 (979)
T 3tsy_A 417 DPD-----------TGD-----SLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD----DDELFI 476 (979)
T ss_dssp CTT-----------SCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEE
T ss_pred eCC-----------CCC-----CCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----CceEEE
Confidence 543 122 46789999999976 46676 499999999985 678999
Q ss_pred EeecCceEeeeeeecCHHHHHHHHHHH
Q 007464 425 ICRRNLLLTINIDKNTEKDLQLSVDEA 451 (603)
Q Consensus 425 ~gR~~~~i~v~Gekv~e~~v~~av~~a 451 (603)
+||.+|+|+++|++|++.|||++|.+.
T Consensus 477 ~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 477 VDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp EEESCC---------------------
T ss_pred ecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999999999864
No 36
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.35 E-value=1.3e-11 Score=139.81 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=90.3
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceec---CCCC---CCccccceeecCCceEEEEEe
Q 007464 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPS---LPPELATFAVLPNIGYFEFIP 362 (603)
Q Consensus 292 WP~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~---~~~~---~~~~~~~~~l~~~~~~~EFip 362 (603)
.++|+ .++.||. .....++.+.+++++++ +.||+||+.+... ..+. ......|.. .+ +.-+..++
T Consensus 275 l~~lr---~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~-~~~~~i~d 348 (620)
T 4dg8_A 275 LGGLR---QLLTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA-IA-GTAVLLLD 348 (620)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBEE-CT-TEEEEEEC
T ss_pred CCCcc---EEEEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCceec-cc-CcEEEEEC
Confidence 46788 6677763 34455555566789999 9999999754221 1111 011112332 22 23344444
Q ss_pred CCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee---------------------eceeCCEEEEeceeCC
Q 007464 363 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------------------RYRLGDVVKVMGFHNS 418 (603)
Q Consensus 363 ~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~---------------------RYr~GDvvrv~g~~~~ 418 (603)
.+ + .. -+++|+.|||+|.. ..||| +|||||+++.+.
T Consensus 349 ~~----~--------~~----~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~---- 408 (620)
T 4dg8_A 349 EH----G--------QE----IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE---- 408 (620)
T ss_dssp TT----S--------CB----CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT----
T ss_pred cc----C--------CC----CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC----
Confidence 32 1 11 14679999999965 35554 499999999985
Q ss_pred CCEEEEEeecCceEeeeeeecCHHHHHHHHHH
Q 007464 419 TPELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 419 ~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
...+.|+||.+|+|+++|++|.+.|||++|.+
T Consensus 409 dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 409 QGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp TSCEEEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred CCeEEEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 68999999999999999999999999999985
No 37
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.31 E-value=1.2e-11 Score=137.44 Aligned_cols=130 Identities=13% Similarity=0.115 Sum_probs=85.5
Q ss_pred CCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCC-------------CccccceeecCCce
Q 007464 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL-------------PPELATFAVLPNIG 356 (603)
Q Consensus 293 P~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~~~~~-------------~~~~~~~~l~~~~~ 356 (603)
++|+ .+++||. ....+++ +.+ +++++ +.||+||+...+...... .....|..+ |+ .
T Consensus 293 ~~lr---~i~~gG~~l~~~~~~~~-~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~-~ 364 (541)
T 1v25_A 293 KTLR---RLVVGGSAAPRSLIARF-ERM-GVEVR-QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI-PL-V 364 (541)
T ss_dssp SSCC---EEEECSSCCCHHHHHHH-HHT-TCEEE-EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEEC-TT-C
T ss_pred hhcc---EEEECCCCCCHHHHHHH-HHh-CCcee-ecccccccccceecccccccccccCccccccccCCCCCcC-CC-c
Confidence 5788 6677763 5555666 446 68998 999999975432221110 011123322 22 2
Q ss_pred EEEEEeCCCCCcccccccCCCccccccccCC--CCeEEEEEcc---cccee--------------eceeCCEEEEeceeC
Q 007464 357 YFEFIPQRLGNLESQVLCIEPKPVGLTEVKV--GEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHN 417 (603)
Q Consensus 357 ~~EFip~~~~~~~~~~~~~~~~~v~l~eve~--G~~yELVvTt---~~GL~--------------RYr~GDvvrv~g~~~ 417 (603)
-++.++.+ ++ ++.. |+.|||+|++ +.||| +|||||+++++.
T Consensus 365 ~~~i~d~~------------g~-----~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~--- 424 (541)
T 1v25_A 365 RLRVADEE------------GR-----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE--- 424 (541)
T ss_dssp EEEEECTT------------SC-----BCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT---
T ss_pred EEEEECCC------------CC-----CCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC---
Confidence 34444432 12 2332 3689999976 46777 499999999985
Q ss_pred CCCEEEEEeecCceEeeeeeecCHHHHHHHHHHH
Q 007464 418 STPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 451 (603)
Q Consensus 418 ~~P~i~f~gR~~~~i~v~Gekv~e~~v~~av~~a 451 (603)
...+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 425 -dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 425 -EGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp -TCCEEEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred -CceEEEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 678999999999999999999999999999864
No 38
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.30 E-value=5.9e-11 Score=145.20 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=90.3
Q ss_pred CCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecC---CC--C-CCccccceeecCCceEEEEEeC
Q 007464 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---NP--S-LPPELATFAVLPNIGYFEFIPQ 363 (603)
Q Consensus 293 P~L~~i~~~~~G~~---~~y~~~l~~~~gg~~i~~~~YgaSEg~~~i~~---~~--~-~~~~~~~~~l~~~~~~~EFip~ 363 (603)
++|+ .++.||. ....+++.+.+++++++ +.||.||+.+.... .. . ......|.. .++. -+..++.
T Consensus 720 ~~lr---~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~~~-~~~i~d~ 793 (1304)
T 2vsq_A 720 KGLR---CILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKP-ISNA-SVYILNE 793 (1304)
T ss_dssp HTCS---EEEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEE-CTTE-EEEEECT
T ss_pred CCcc---EEEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCcee-eCCC-EEEEECC
Confidence 5688 6666762 45556676777778899 99999998543221 11 0 001112332 2332 2223322
Q ss_pred CCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------------eceeCCEEEEeceeCCCC
Q 007464 364 RLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------------RYRLGDVVKVMGFHNSTP 420 (603)
Q Consensus 364 ~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~--------------------RYr~GDvvrv~g~~~~~P 420 (603)
+ .+ .|+.|+.|||+|.. ..||| +|||||+++... .+
T Consensus 794 ~------------~~-----~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG 852 (1304)
T 2vsq_A 794 Q------------SQ-----LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DG 852 (1304)
T ss_dssp T------------SC-----BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TS
T ss_pred C------------cC-----CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CC
Confidence 1 22 45789999999976 34554 699999999985 68
Q ss_pred EEEEEeecCceEeeeeeecCHHHHHHHHHH
Q 007464 421 ELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (603)
Q Consensus 421 ~i~f~gR~~~~i~v~Gekv~e~~v~~av~~ 450 (603)
.++|+||.+++++++|++|...|||.+|.+
T Consensus 853 ~l~~~GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 853 TIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp CEEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred eEEEEcCCCCEEEECCEeeCHHHHHHHHHh
Confidence 999999999999999999999999999975
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.69 E-value=1e-07 Score=103.38 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=67.0
Q ss_pred cCCCCceeeEEeecCh---HHHHHHHHHHhC-----CCCeeccccccCcccceecCC-CCCCc-----------------
Q 007464 291 LFPNAKYLSGIMTGSM---EHYLKKLRHYAG-----DLPLMSADYGSSEGWIGANVN-PSLPP----------------- 344 (603)
Q Consensus 291 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g-----g~~i~~~~YgaSEg~~~i~~~-~~~~~----------------- 344 (603)
-.++|+ .+++||. ....+++.+.++ ++.++ +.||+||+.+.+... +..++
T Consensus 309 ~l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 384 (480)
T 3t5a_A 309 DLGNIL---TILSGSERVQAATIKRFADRFARFNLQERVIR-PSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKP 384 (480)
T ss_dssp CCTTCC---EEEECCTTCCHHHHHHHHHHSGGGTCCGGGEE-EEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCC
T ss_pred chhhhh---eeeecCCcCCHHHHHHHHHHHhhcCCChhhcc-ccccccccceeEeecccCCCcceEEecHHHhccCceee
Confidence 356788 6777773 556667777763 34677 999999986533322 11110
Q ss_pred ---------cccceeecCCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee----------
Q 007464 345 ---------ELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------- 402 (603)
Q Consensus 345 ---------~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~v~l~eve~G~~yELVvTt---~~GL~---------- 402 (603)
...|..+ + .-+..++.+ ++ .+|+.|+.|||+|.+ +.|||
T Consensus 385 ~~~~~~~~~~~~G~p~-~--~~~~ivd~~-----------~g-----~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f 445 (480)
T 3t5a_A 385 CAGGGATSLISYMLPR-S--PIVRIVDSD-----------TC-----IECPDGTVGEIWVHGDNVANGYWQKPDESERTF 445 (480)
T ss_dssp CCSSSCEEEECEECCS-S--SEEEEEETT-----------TT-----EECCTTBCEEEEEESTTSCCCBTTBHHHHHHHH
T ss_pred cCCCCcceeeecCccc-C--CEEEEEcCC-----------CC-----cCCCCCCEEEEEEeCCccccccccCcchhHHHH
Confidence 0011111 1 123333322 11 256789999999966 46776
Q ss_pred ---------------eceeCCEEEEeceeCCCCEEEEEee
Q 007464 403 ---------------RYRLGDVVKVMGFHNSTPELKFICR 427 (603)
Q Consensus 403 ---------------RYr~GDvvrv~g~~~~~P~i~f~gR 427 (603)
+|||||+++++ ...+.|+||
T Consensus 446 ~~~~~~~~~~~~~~~w~~TGDlg~~d-----dG~l~~~GR 480 (480)
T 3t5a_A 446 GGKIVTPSPGTPEGPWLRTGDSGFVT-----DGKMFIIGR 480 (480)
T ss_dssp CBCCSSCCTTCCCCCBEEEEEEEEEE-----TTEEEECC-
T ss_pred hhhhccccCCCCCCCeeeccceeeEE-----CCEEEEeCC
Confidence 79999999884 478999998
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.49 E-value=0.00029 Score=60.92 Aligned_cols=90 Identities=9% Similarity=0.104 Sum_probs=56.8
Q ss_pred ecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccC--CCHHHHHHHHHHHHHhc
Q 007464 427 RRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGE--VNDEVLKECCNCLDRSF 504 (603)
Q Consensus 427 R~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l~vE~~~~--~~~~~l~~~~~~ld~~L 504 (603)
|.||||+++|.|+++.+||++|.+. .++. ..+.+..+.........+++|.... .+...++.++..+.+++
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~v~-~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l 74 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KELG-SDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQL 74 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TTEE-EEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CCcc-cceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHH
Confidence 8999999999999999999998753 2321 1233332221122244577877543 34455666666666654
Q ss_pred cChhhHHHhhcCCcCCeEEEEeccChHH
Q 007464 505 VDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (603)
Q Consensus 505 ~n~~Y~~~R~~g~l~p~~v~~v~~GtF~ 532 (603)
+...| + +++|.+|++|++.
T Consensus 75 -------~~~~g-v-~~~v~~v~~~~lP 93 (109)
T 3lax_A 75 -------KDEIL-V-TPRVKLVPKGALP 93 (109)
T ss_dssp -------HHHHS-S-CCEEEEECTTCSC
T ss_pred -------HHHhC-C-ccceEEEcCCeec
Confidence 11223 3 4589999999987
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=97.29 E-value=0.00067 Score=58.81 Aligned_cols=90 Identities=8% Similarity=0.132 Sum_probs=56.2
Q ss_pred eecCceEeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCC---CHHHHHHHHHHHHH
Q 007464 426 CRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEV---NDEVLKECCNCLDR 502 (603)
Q Consensus 426 gR~~~~i~v~Gekv~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l~vE~~~~~---~~~~l~~~~~~ld~ 502 (603)
||.+|||+++|.|+++.+||++|.+. + ++. ..|.+..+.....-.-++++|+ .+. +....+.+.+.+.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~ 72 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITR 72 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHH
Confidence 79999999999999999999999863 2 221 2454433211112245688998 332 12344455555555
Q ss_pred hccChhhHHHhhcCCcCCeEEEEeccChHH
Q 007464 503 SFVDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (603)
Q Consensus 503 ~L~n~~Y~~~R~~g~l~p~~v~~v~~GtF~ 532 (603)
.+ +...| +. ++|.+|++|++.
T Consensus 73 ~l-------~~~~~-~~-~~v~~v~~~~lP 93 (109)
T 3gxs_A 73 QL-------KDEIL-VT-PRVKLVPKGALP 93 (109)
T ss_dssp HH-------HHHHS-SC-CEEEEECTTCSC
T ss_pred HH-------HHhhC-Cc-eEEEEECCCCcc
Confidence 54 11223 44 499999999876
No 42
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=26.20 E-value=69 Score=27.12 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCchHHHHHhhccC--CCCHHHHHHHHHHhcCCCCC
Q 007464 230 TFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (603)
Q Consensus 230 ~l~~~w~~l~~dI~~g~~~~~i~~~~~R~~l~~~l--~~~p~~A~~l~~~~~~~~~~ 284 (603)
+.+++-.++++.+.... .++...|+.+|..+. .|.|+-.+++++.+... ||
T Consensus 39 Ltdeev~~Va~~L~~~~---~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~-GW 91 (103)
T 2kvc_A 39 LSHDEVKAVANELMRLG---DFDQIDIGVVITHFTDELPSPEDVERVRARLAAQ-GW 91 (103)
T ss_dssp SCHHHHHHHHHHHHHHT---SSCSSCHHHHHHSCCSSCSCHHHHHHHHHHHGGG-CC
T ss_pred CCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc-CC
Confidence 36778888888876544 266678999999988 48888888888877654 55
No 43
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=25.98 E-value=1.9e+02 Score=24.38 Aligned_cols=51 Identities=6% Similarity=0.136 Sum_probs=33.4
Q ss_pred ecCHHHHHHHHHHHHHHhhhcCCeeEeeEE-------eecCCCCCceEEEEEEecc-CCC
Q 007464 438 KNTEKDLQLSVDEAAQLLAEEKQEVVDFTS-------HVDLSTDPGHYVIFWEVSG-EVN 489 (603)
Q Consensus 438 kv~e~~v~~av~~a~~~l~~~g~~l~~f~~-------~~~~~~~~~hy~l~vE~~~-~~~ 489 (603)
.++++++..++.++...+...|..+....- ++=.....|||+ ++.+.. ++.
T Consensus 19 ~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~-l~~f~a~~~~ 77 (110)
T 2j5a_A 19 TLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYF-LVQFKTENPQ 77 (110)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEE-EEEEEESCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEE-EEEEEeCCHH
Confidence 467899999999988877677877765432 111123468995 666755 444
No 44
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=25.92 E-value=77 Score=27.21 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcccC----CCCCchHHHHHhhccC--CCCHHHHHHHHHHhcCCCCC
Q 007464 231 FELVWEELCDDIREGVLS----SRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (603)
Q Consensus 231 l~~~w~~l~~dI~~g~~~----~~i~~~~~R~~l~~~l--~~~p~~A~~l~~~~~~~~~~ 284 (603)
.++.-.+++..|.+.... ..++...|+.+|.++. -|.|+-.+++++.+... ||
T Consensus 42 tdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~-GW 100 (112)
T 2m0n_A 42 TEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAG-GW 100 (112)
T ss_dssp CHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHC-CT
T ss_pred CHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhc-CC
Confidence 677888888888654432 2477788999999988 48888888887776653 54
No 45
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=23.63 E-value=58 Score=27.99 Aligned_cols=51 Identities=10% Similarity=0.209 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCchHHHHHhhccC--CCCHHHHHHHHHHhcCCCCC
Q 007464 230 TFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (603)
Q Consensus 230 ~l~~~w~~l~~dI~~g~~~~~i~~~~~R~~l~~~l--~~~p~~A~~l~~~~~~~~~~ 284 (603)
+.+++-.++++.+.... .++...|+.+|..+. .|.|+-.+++++.+... ||
T Consensus 41 Ltdeev~~Va~~L~~~~---~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~-GW 93 (112)
T 2lky_A 41 LTNDEIKAIAEDLEKRA---HFDHIDIGVLITQMTDEMPREEDIERVRRHLALQ-GW 93 (112)
T ss_dssp CCHHHHHHHHHHHHHHC---CCSCCCSHHHHHHHTTCCCCHHHHHHHHHHHHTT-CC
T ss_pred CCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc-CC
Confidence 36777888888776543 266667888888887 47888888888877764 55
No 46
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=23.03 E-value=3.7e+02 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEecc
Q 007464 440 TEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSG 486 (603)
Q Consensus 440 ~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l~vE~~~ 486 (603)
....+.+++.+++. ..++.+.+|.+.+| |..++|++..
T Consensus 42 ~~~~l~~~l~~~~~---~~~~~i~a~~vmpD------HvHlLv~~~p 79 (143)
T 2fyx_A 42 VADGLKDILRDIAT---QNGLELVALEVMPD------YVHLLLGATP 79 (143)
T ss_dssp HHHHHHHHHHHHHH---HTTCEEEEEEECSS------EEEEEEEECT
T ss_pred HHHHHHHHHHHHHh---hcCeEEEEEEecCC------eEEEEEecCC
Confidence 55677777777766 57999999998644 9999999843
No 47
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=22.88 E-value=75 Score=27.08 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhcccCC-CCCchHHHHHhhccC--CCCHHHHHHHHHHhcCCCCC
Q 007464 231 FELVWEELCDDIREGVLSS-RITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 284 (603)
Q Consensus 231 l~~~w~~l~~dI~~g~~~~-~i~~~~~R~~l~~~l--~~~p~~A~~l~~~~~~~~~~ 284 (603)
.+++-.+++..+.+..... .++...|+.+|.++. -|.|+-.+++++.+... ||
T Consensus 45 tddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~-GW 100 (107)
T 3ol3_A 45 TEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASV-GW 100 (107)
T ss_dssp CHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTT-TC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhc-CC
Confidence 6777888888776654432 477788999998887 47888888888877764 55
No 48
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=22.03 E-value=3.9e+02 Score=26.42 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCCCHHHHHHHHHHHH
Q 007464 441 EKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLD 501 (603)
Q Consensus 441 e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l~vE~~~~~~~~~l~~~~~~ld 501 (603)
+..+.++|..+. ..|+.+.-.-+.+- ...++.|.+|||+.+..+.+.++...+.|.
T Consensus 211 pGaL~~~L~~Fa----~~gINLtkIESRP~-~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~ 266 (283)
T 2qmx_A 211 QGSLFRALATFA----LRGIDLTKIESRPS-RKKAFEYLFYADFIGHREDQNVHNALENLR 266 (283)
T ss_dssp TTHHHHHHHHHH----TTTCCEEEEEEEEC-SSSTTEEEEEEEEESCTTSHHHHHHHHHHH
T ss_pred CchHHHHHHHHH----HcCCCeeEEEeeEc-CCCCcceEEEEEEecCCCcHHHHHHHHHHH
Confidence 556667776654 46887776666654 345789999999986655444444444444
No 49
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=20.93 E-value=1.7e+02 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=30.9
Q ss_pred ecCHHHHHHHHHHHHHHhhhcCCeeEeeEE-------eecCCCCCceEEEEEEecc
Q 007464 438 KNTEKDLQLSVDEAAQLLAEEKQEVVDFTS-------HVDLSTDPGHYVIFWEVSG 486 (603)
Q Consensus 438 kv~e~~v~~av~~a~~~l~~~g~~l~~f~~-------~~~~~~~~~hy~l~vE~~~ 486 (603)
.++++++...+.+....+...|..+....- ++=.....|||+ ++.+..
T Consensus 13 ~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~-l~~f~a 67 (101)
T 1cqm_A 13 NLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFL-WYQVEM 67 (101)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEE-EEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEE-EEEEEe
Confidence 367899999999987777677877665432 221122458995 555643
No 50
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=20.15 E-value=3.9e+02 Score=22.47 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCCCHHHHHHHHHHHHHhc---cChhhHHHhhcC
Q 007464 440 TEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSF---VDAGYVSARKVN 516 (603)
Q Consensus 440 ~e~~v~~av~~a~~~l~~~g~~l~~f~~~~~~~~~~~hy~l~vE~~~~~~~~~l~~~~~~ld~~L---~n~~Y~~~R~~g 516 (603)
....+.+++..++. ..++.+.+|.+.+| |..++|++.... .+..+...+...- .|..|...+ .|
T Consensus 32 ~~~~l~~~l~~~~~---~~~~~i~a~~impd------HvHllv~~~~~~---~ls~~~~~lK~~ss~~i~~~~~~~~-~~ 98 (133)
T 2f5g_A 32 IAEYTKEVLKSIAE---ELGCEIIALEVMPD------HIHLFVNCPPRY---APSYLANYFKGKSARLILKKFPQLN-KG 98 (133)
T ss_dssp HHHHHHHHHHHHHH---HHTCEEEEEEEETT------EEEEEEECCTTS---CHHHHHHHHHHHHHHHHHHHCGGGC-SS
T ss_pred HHHHHHHHHHHHHH---hCCeEEeeeeecCC------cEEEEEEecCCc---cHHHHHHHHhhHhHHHHHHhchhhc-CC
Confidence 34556677777666 56999999998655 999999874321 3444444444321 133222211 12
Q ss_pred Cc--CCeEEEEeccChHHHHHHHH
Q 007464 517 AI--GPLELRVVLKGTFQQILDHY 538 (603)
Q Consensus 517 ~l--~p~~v~~v~~GtF~~~~~~~ 538 (603)
.+ +.--.+.|...+++...++.
T Consensus 99 ~lWq~~y~~~~i~~~~~~~i~~YI 122 (133)
T 2f5g_A 99 KLWTRSYFVATAGNVSSEVIKKYI 122 (133)
T ss_dssp CSBCSCEEEEEEBCCCHHHHHHHH
T ss_pred CEEEcCeeeEeecCCCHHHHHHHH
Confidence 22 33456666655667666654
Done!