Query 007465
Match_columns 603
No_of_seqs 392 out of 2925
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2.8E-87 6.1E-92 737.2 38.8 459 49-559 64-567 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 1.4E-65 3E-70 526.4 30.8 387 91-545 18-425 (536)
3 PLN03192 Voltage-dependent pot 100.0 1.1E-63 2.4E-68 581.5 40.0 433 49-557 48-499 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 3.6E-61 7.9E-66 497.2 18.3 470 52-583 207-698 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.3E-56 2.9E-61 465.2 27.4 413 52-555 217-652 (815)
6 KOG3713 Voltage-gated K+ chann 99.5 1.8E-13 3.8E-18 143.8 15.9 182 102-352 241-435 (477)
7 PRK09392 ftrB transcriptional 99.5 1.4E-13 3E-18 137.8 11.0 168 416-601 6-181 (236)
8 PRK11753 DNA-binding transcrip 99.4 1.9E-12 4.1E-17 127.1 12.3 160 426-602 6-177 (211)
9 PF00520 Ion_trans: Ion transp 99.3 8.2E-12 1.8E-16 120.2 12.2 189 105-343 1-200 (200)
10 KOG1545 Voltage-gated shaker-l 99.3 1.8E-12 4E-17 129.7 7.0 47 298-344 397-443 (507)
11 PRK11161 fumarate/nitrate redu 99.3 4.5E-12 9.8E-17 126.6 8.6 164 419-601 15-192 (235)
12 KOG0614 cGMP-dependent protein 99.2 1.9E-11 4.2E-16 128.1 7.3 117 412-542 267-385 (732)
13 PRK10402 DNA-binding transcrip 99.2 4.1E-11 8.9E-16 119.1 8.8 153 430-601 21-177 (226)
14 cd00038 CAP_ED effector domain 99.2 2.5E-10 5.4E-15 99.1 11.0 105 424-544 1-107 (115)
15 PRK09391 fixK transcriptional 99.1 1.6E-10 3.4E-15 115.3 8.4 146 435-601 33-187 (230)
16 COG0664 Crp cAMP-binding prote 99.1 3.6E-10 7.8E-15 110.2 9.7 145 420-582 3-149 (214)
17 KOG1113 cAMP-dependent protein 99.1 1.5E-10 3.2E-15 116.8 7.0 107 416-542 121-228 (368)
18 smart00100 cNMP Cyclic nucleot 99.1 1.2E-09 2.5E-14 95.3 11.8 105 424-542 1-107 (120)
19 KOG0614 cGMP-dependent protein 99.1 9.6E-11 2.1E-15 123.0 5.5 112 411-542 148-260 (732)
20 PF00027 cNMP_binding: Cyclic 99.1 7.8E-10 1.7E-14 92.5 9.5 86 442-542 1-87 (91)
21 KOG1419 Voltage-gated K+ chann 99.1 6.5E-10 1.4E-14 117.4 10.7 87 291-383 266-352 (654)
22 PLN02868 acyl-CoA thioesterase 99.0 1.5E-09 3.1E-14 117.7 13.3 108 416-542 7-116 (413)
23 PF07885 Ion_trans_2: Ion chan 99.0 9.1E-10 2E-14 90.6 7.5 55 294-348 24-78 (79)
24 PRK13918 CRP/FNR family transc 99.0 2.2E-09 4.8E-14 104.6 10.3 82 439-537 5-90 (202)
25 TIGR03697 NtcA_cyano global ni 98.9 1.7E-09 3.7E-14 104.4 8.0 138 448-601 1-151 (193)
26 COG2905 Predicted signal-trans 98.9 1.4E-08 3.1E-13 108.4 11.9 118 416-552 6-124 (610)
27 KOG1113 cAMP-dependent protein 98.7 2.4E-08 5.3E-13 101.0 8.0 113 411-542 234-347 (368)
28 KOG1420 Ca2+-activated K+ chan 98.6 4.4E-08 9.6E-13 103.6 5.7 127 293-427 287-418 (1103)
29 KOG4390 Voltage-gated A-type K 98.2 3.4E-08 7.5E-13 100.2 -5.5 52 297-348 359-414 (632)
30 PRK10537 voltage-gated potassi 98.2 4.1E-06 8.8E-11 89.7 7.8 53 295-347 169-221 (393)
31 PF01007 IRK: Inward rectifier 97.8 4.2E-05 9.1E-10 80.0 7.9 56 293-348 83-140 (336)
32 KOG1418 Tandem pore domain K+ 97.6 7.9E-05 1.7E-09 80.6 5.4 58 295-352 116-173 (433)
33 KOG3684 Ca2+-activated K+ chan 97.5 0.001 2.2E-08 70.1 11.5 86 291-383 284-369 (489)
34 KOG2968 Predicted esterase of 97.0 0.00095 2.1E-08 75.3 6.1 109 432-556 500-610 (1158)
35 KOG4404 Tandem pore domain K+ 96.3 0.0015 3.3E-08 66.0 1.0 52 294-345 80-131 (350)
36 PRK11832 putative DNA-binding 96.1 0.085 1.8E-06 51.2 12.2 107 432-557 14-122 (207)
37 KOG4404 Tandem pore domain K+ 95.7 0.013 2.8E-07 59.5 4.8 58 295-352 187-252 (350)
38 KOG3542 cAMP-regulated guanine 95.7 0.021 4.7E-07 62.6 6.7 110 413-542 277-389 (1283)
39 PF04831 Popeye: Popeye protei 95.5 0.18 3.9E-06 46.1 10.9 104 427-545 14-120 (153)
40 KOG2968 Predicted esterase of 95.0 0.12 2.6E-06 59.1 9.8 112 435-556 110-224 (1158)
41 KOG1418 Tandem pore domain K+ 94.8 0.0085 1.9E-07 64.7 0.3 47 294-340 242-296 (433)
42 PF08412 Ion_trans_N: Ion tran 94.3 0.012 2.7E-07 47.6 0.1 24 50-73 34-58 (77)
43 KOG2302 T-type voltage-gated C 94.2 0.4 8.6E-06 55.3 11.3 43 102-144 1157-1201(1956)
44 KOG3827 Inward rectifier K+ ch 94.0 0.15 3.2E-06 53.2 7.1 52 294-345 112-165 (400)
45 KOG3542 cAMP-regulated guanine 92.5 0.18 3.9E-06 55.7 5.2 90 418-535 38-128 (1283)
46 PLN03223 Polycystin cation cha 83.0 15 0.00032 44.9 12.7 26 323-348 1398-1423(1634)
47 KOG3193 K+ channel subunit [In 82.5 0.37 8E-06 52.1 -0.3 38 297-334 220-257 (1087)
48 COG4709 Predicted membrane pro 76.6 12 0.00026 35.5 7.7 74 358-433 5-83 (195)
49 PLN03192 Voltage-dependent pot 75.7 1.5E+02 0.0032 35.4 18.6 41 400-440 327-371 (823)
50 PF08006 DUF1700: Protein of u 71.8 20 0.00044 34.0 8.3 57 358-416 5-66 (181)
51 PF00060 Lig_chan: Ligand-gate 66.0 10 0.00022 34.2 4.8 60 290-350 40-99 (148)
52 PF07883 Cupin_2: Cupin domain 64.4 11 0.00024 29.1 4.1 43 443-492 3-47 (71)
53 KOG3676 Ca2+-permeable cation 58.8 1.4E+02 0.003 34.8 12.8 76 307-383 601-685 (782)
54 PF00520 Ion_trans: Ion transp 54.5 99 0.0021 28.6 9.6 57 287-343 134-195 (200)
55 PRK13290 ectC L-ectoine syntha 54.1 71 0.0015 28.5 7.9 48 441-493 38-86 (125)
56 PF10011 DUF2254: Predicted me 52.0 62 0.0013 34.6 8.5 79 290-368 96-175 (371)
57 KOG2301 Voltage-gated Ca2+ cha 51.0 1.6E+02 0.0035 37.6 12.7 74 303-376 1059-1143(1592)
58 PF05899 Cupin_3: Protein of u 48.1 26 0.00057 28.0 3.8 39 446-492 15-54 (74)
59 PF13314 DUF4083: Domain of un 47.6 94 0.002 23.7 6.2 40 327-369 14-57 (58)
60 TIGR03037 anthran_nbaC 3-hydro 44.4 59 0.0013 30.3 5.9 59 458-538 48-107 (159)
61 KOG0498 K+-channel ERG and rel 42.4 1.3E+02 0.0028 35.1 9.5 41 400-440 371-416 (727)
62 PF14377 DUF4414: Domain of un 40.6 49 0.0011 28.6 4.6 44 370-413 51-105 (108)
63 KOG2301 Voltage-gated Ca2+ cha 39.7 1.7E+02 0.0036 37.5 10.4 45 99-151 471-520 (1592)
64 COG1917 Uncharacterized conser 33.7 90 0.0019 27.6 5.3 49 440-495 45-95 (131)
65 COG0662 {ManC} Mannose-6-phosp 32.4 1.1E+02 0.0024 27.1 5.7 47 439-492 37-85 (127)
66 PF07697 7TMR-HDED: 7TM-HD ext 32.0 51 0.0011 32.0 3.7 34 426-459 172-207 (222)
67 COG4792 EscU Type III secretor 29.7 2.3E+02 0.0051 29.2 7.8 74 304-383 166-241 (349)
68 PHA03029 hypothetical protein; 28.2 2.7E+02 0.0059 22.3 6.3 42 318-359 2-44 (92)
69 COG5559 Uncharacterized conser 26.1 64 0.0014 24.6 2.4 19 396-414 5-23 (65)
70 PRK13264 3-hydroxyanthranilate 26.0 97 0.0021 29.4 4.2 61 456-538 52-113 (177)
71 KOG3609 Receptor-activated Ca2 25.8 5.9E+02 0.013 30.1 11.0 71 296-368 555-632 (822)
72 PF14377 DUF4414: Domain of un 23.9 1.7E+02 0.0036 25.3 5.1 47 371-417 8-68 (108)
73 PF02037 SAP: SAP domain; Int 22.6 87 0.0019 21.1 2.4 25 359-383 5-34 (35)
74 PHA01757 hypothetical protein 22.5 4.1E+02 0.0088 21.7 6.4 46 318-363 4-49 (98)
75 PF01484 Col_cuticle_N: Nemato 21.9 3.2E+02 0.0068 19.8 6.4 39 324-362 9-48 (53)
76 PF14841 FliG_M: FliG middle d 20.2 1.1E+02 0.0024 24.7 3.1 39 396-442 30-68 (79)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-87 Score=737.23 Aligned_cols=459 Identities=33% Similarity=0.545 Sum_probs=399.4
Q ss_pred CccceeecCCCchh---hHHHHHHHHHHHhhccceEEEEEEcCCceeEEEcCcchhHHHHHHHHHHHHHHHHHHHHhCcc
Q 007465 49 PCVKKIFDTHGSYG---NWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTG 125 (603)
Q Consensus 49 ~~~~~ii~P~s~~~---~~~~~~~~~i~~~~~p~f~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~ 125 (603)
+..++||||.|+|+ +|+++++|++++++||+|||+|.+.....| +|......+.++|.++|++|++||+++||||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 44588999999999 678889999999999999999999767777 7888888999999999999999999999999
Q ss_pred -ccCCCc--c-ccc--------chhHHHHHhhcChhHHHHHHHHhhcccccchh--hh-HHHHHHHHHHHHHHHHHHHHH
Q 007465 126 -ISKSSR--K-RSW--------LLFLSDVLFILPIPQVLLILAMIQRMRGTEFS--FA-VKFFLFQHVLRTIQIYRVYMK 190 (603)
Q Consensus 126 -~~~~~~--V-d~k--------~~F~iDlls~lP~~~l~~i~~~~~~~~~~~~~--~~-Lr~~~~~~l~RllRi~rl~~~ 190 (603)
+++.+. | ||| +||++|++|++|+|+++ +|..+. ..+... .. ..++.++|++||.|+.++++.
T Consensus 142 yv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~-~~~~~~--~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r 218 (727)
T KOG0498|consen 142 YVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIV-VLVVIG--STSLALESTILVGILLLQRLPRLRRVIPLFAR 218 (727)
T ss_pred EECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhhe-eeeeec--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777554 4 886 99999999999999998 664431 011111 12 445788999999999999999
Q ss_pred hccccc-hhhhh-HH--H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCcccccCCCcccccccccccCCC
Q 007465 191 AQVPSR-HAELA-LG--F-SFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTN 265 (603)
Q Consensus 191 ~~~~~~-~~e~~-~~--~-l~~~~l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~ 265 (603)
+++..+ ..|++ ++ + +++||+++||.||+||++|.++...||+++ +|+...+...
T Consensus 219 ~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------tw~~~l~~~~ 277 (727)
T KOG0498|consen 219 LEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------TWLGSLGRLL 277 (727)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------cccccccccc
Confidence 999888 78888 55 3 888899999999999999998888888754 3443311000
Q ss_pred CCCCCccccccchhccccCcccccchHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 266 NQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQT 345 (603)
Q Consensus 266 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~ 345 (603)
+.....|+||+| +++.+|++|+||+++||||+||||++|+|..|++|+|++|++|+++||++||||++
T Consensus 278 ~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~ 345 (727)
T KOG0498|consen 278 SCYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTA 345 (727)
T ss_pred ccCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHH
Confidence 011223668765 56679999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcH-HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcch
Q 007465 346 YTKSGSI-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVE 423 (603)
Q Consensus 346 il~~~~~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~ 423 (603)
++|+++. .++|+.||+++++||++|+||++||+||++| ||+|+.++|+||+++|++||++||++|++|+|.++++++|
T Consensus 346 ~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vp 425 (727)
T KOG0498|consen 346 LLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVP 425 (727)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCc
Confidence 9999999 9999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhc
Q 007465 424 EFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQD 502 (603)
Q Consensus 424 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~ 502 (603)
+|+++|++++++|+.++++.+|+|||+|++|||+.++||||.+|.+++...+|| ++.+...| +||+|||..++|++.
T Consensus 426 LF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~~~~~~ 503 (727)
T KOG0498|consen 426 LFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELLTWCLD 503 (727)
T ss_pred hhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999997766 44466788 999999665557763
Q ss_pred ccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh---------ccc----------chhhhHHHHHHHHH
Q 007465 503 ACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL---------IKH----------NRAAPFIQAARFIT 559 (603)
Q Consensus 503 ~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~---------~~~----------~~~~~~i~~~~~~~ 559 (603)
. ++++||+|+|.|+++.|+++||+.+++ .+| .|+++++|.+++++
T Consensus 504 ~------------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~ 567 (727)
T KOG0498|consen 504 L------------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRH 567 (727)
T ss_pred C------------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 2 247899999999999999999999998 221 88999999999877
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-65 Score=526.39 Aligned_cols=387 Identities=20% Similarity=0.335 Sum_probs=329.0
Q ss_pred eeE-EEcCcchhHHHHHHHHHHHHHHHHHHHHhCcc-ccCCCcc-cc-c--------chhHHHHHhhcChhHHHHHHHHh
Q 007465 91 KCI-EFDNDLWIAASACRSVFDLFYIIDNVFRLHTG-ISKSSRK-RS-W--------LLFLSDVLFILPIPQVLLILAMI 158 (603)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~-~~~~~~V-d~-k--------~~F~iDlls~lP~~~l~~i~~~~ 158 (603)
.|| ++..++...|.++|+++|++|++|++++.||| +++|.+| |. | ..|.+|++|++|+|+++ ++.
T Consensus 18 ~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~-~~~-- 94 (536)
T KOG0500|consen 18 AAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLL-FKD-- 94 (536)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHh-hcC--
Confidence 444 45566677899999999999999999999999 9999999 43 2 78999999999999998 441
Q ss_pred hcccccchhhhHHHHHHHHHHHHHHHHHHHHHhccccchhhhh-HH-H--HHHHH-HHHHHHHHHHHHHhhhhhhhHHHh
Q 007465 159 QRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSRHAELA-LG-F--SFSYI-QTSNVIGALWYFFAIKSESVCWKK 233 (603)
Q Consensus 159 ~~~~~~~~~~~Lr~~~~~~l~RllRi~rl~~~~~~~~~~~e~~-~~-~--l~~~~-l~~H~~aCiwy~i~~~~~~~~~~~ 233 (603)
++.+ +.|++||+|++|+++++++++.-+.+. +. + ++.++ ++.||.||+||+++..
T Consensus 95 ----~~~~--------~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~-------- 154 (536)
T KOG0500|consen 95 ----GSAS--------LERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKA-------- 154 (536)
T ss_pred ----Ccch--------HHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHh--------
Confidence 1211 124899999999999999886311111 21 2 55554 6799999999999962
Q ss_pred hhcCCCCCCCcccccCCCcccccccccccCCCCCCCCccccccchhccccCcccccchHHHHHHHHHHHhhhccccccCC
Q 007465 234 ACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGL 313 (603)
Q Consensus 234 ~c~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGd 313 (603)
.+.+.++|+... .++| .|+ . ....++.++|++|+|||..||||+|.-+
T Consensus 155 ----------------~g~~~d~wvY~~--i~d~-----~~~---~------c~~~n~~ReY~~S~YWStLTlTTiGe~P 202 (536)
T KOG0500|consen 155 ----------------IGFTTDDWVYPK--INDP-----EFA---T------CDAGNLTREYLYSLYWSTLTLTTIGEQP 202 (536)
T ss_pred ----------------cCccccccccCC--ccCc-----ccc---c------cchhHHHHHHHHHHHHHhhhhhhccCCC
Confidence 145677798531 1111 121 1 1235799999999999999999999865
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-Hhhhhhcc
Q 007465 314 QTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETR 391 (603)
Q Consensus 314 i~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~ 391 (603)
+|.++.|++|.|+-.++|+++||.++|+||++++++++ +.+|+++||.+++||+.|++|+.|+.||.+| .|.|.+++
T Consensus 203 -~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~ 281 (536)
T KOG0500|consen 203 -PPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKK 281 (536)
T ss_pred -CCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999 9999999999999999999999999999999 99999999
Q ss_pred CCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEE
Q 007465 392 NFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLT 471 (603)
Q Consensus 392 ~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v 471 (603)
..||+++++.||+.|+.+|+.+++.+.|+++++|+++.+.++.+|+.+++++.|.|||+|+++||.+++||+|.+|.+++
T Consensus 282 ~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~V 361 (536)
T KOG0500|consen 282 IVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAV 361 (536)
T ss_pred cccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh-ccc
Q 007465 472 YNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL-IKH 545 (603)
Q Consensus 472 ~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~-~~~ 545 (603)
..+||++. ...+ +|++|||++++ +..+ +. +.++||+++++++++++++|+|+|+.++++ +|.
T Consensus 362 v~dDg~t~----~~~L~~G~~FGEisIl-ni~g----~~---~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~ 425 (536)
T KOG0500|consen 362 VADDGVTV----FVTLKAGSVFGEISIL-NIKG----NK---NGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPD 425 (536)
T ss_pred EecCCcEE----EEEecCCceeeeeEEE-EEcC----cc---cCCcceeeeeeeccceeeEeeHHHHHHHHHhCCH
Confidence 99888665 3677 99999999983 3332 12 234899999999999999999999999999 554
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.1e-63 Score=581.46 Aligned_cols=433 Identities=17% Similarity=0.221 Sum_probs=338.2
Q ss_pred CccceeecCCCchh-hHHHHHHHHHHHhhccceEEEEEEcCCceeEEEcCcchhHHHHHHHHHHHHHHHHHHHHhCcc-c
Q 007465 49 PCVKKIFDTHGSYG-NWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTG-I 126 (603)
Q Consensus 49 ~~~~~ii~P~s~~~-~~~~~~~~~i~~~~~p~f~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~-~ 126 (603)
+..+++|+|.++++ +|+.++.+++. |..++.|+..+|. +......+.++++++|++|++||+++|+|| +
T Consensus 48 ~~~~~ii~P~~~~~~~Wd~~~~~~~~--------y~~~~~p~~~~F~-~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~ 118 (823)
T PLN03192 48 GSDGWIISPMDSRYRWWETLMVVLVA--------YSAWVYPFEVAFL-NASPKRGLEIADNVVDLFFAVDIVLTFFVAYI 118 (823)
T ss_pred ccCCeEECCCCcHHHHHHHHHHHHHH--------HHHHHHHHHHHee-CCCCCCCeeeHHHHHHHHHHHHHHhheeEEEE
Confidence 45599999999999 77776655543 1122223444552 222233577899999999999999999999 7
Q ss_pred cCCC--cc-ccc--------chhHHHHHhhcChhHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007465 127 SKSS--RK-RSW--------LLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPS 195 (603)
Q Consensus 127 ~~~~--~V-d~k--------~~F~iDlls~lP~~~l~~i~~~~~~~~~~~~~~~Lr~~~~~~l~RllRi~rl~~~~~~~~ 195 (603)
+++. .| |++ +||++|++|++|++++. .. .++. ......+++++++|++|+.|+.+++..+++..
T Consensus 119 d~~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~-~~--~~~~--~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~ 193 (823)
T PLN03192 119 DPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALA-YL--ITGT--VKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDI 193 (823)
T ss_pred eCCCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHH-HH--hcCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 45 765 89999999999999875 22 1111 11111133344444444444444444443321
Q ss_pred chhhhhHH-H--HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCcccccCCCcccccccccccCCCCCCCCcc
Q 007465 196 RHAELALG-F--SFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIF 272 (603)
Q Consensus 196 ~~~e~~~~-~--l~~~~l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~ 272 (603)
.+...... + ++..++++||+||+||+++.. + ...+.+|+....+
T Consensus 194 ~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~-------------------~-----~~~~~~Wi~~~~~--------- 240 (823)
T PLN03192 194 RFSYFWIRCARLLSVTLFLVHCAGCLYYLIADR-------------------Y-----PHQGKTWIGAVIP--------- 240 (823)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------c-----CCCCCchHHHhhh---------
Confidence 11111112 2 444557899999999999841 1 2235689864211
Q ss_pred ccccchhccccCcccccchHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 273 DFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 273 ~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
+ ..+.+++.+|++|+|||++|||||||||++|.|+.|++|++++|++|+++|||++|+|++++.+.+.
T Consensus 241 ~------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~ 308 (823)
T PLN03192 241 N------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR 308 (823)
T ss_pred c------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhhhhchH
Q 007465 353 -LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRK 430 (603)
Q Consensus 353 -~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~ 430 (603)
+.+|+++|+.+++||++++||++||+||++| +|+|+ .++.+++++++.||++||.+|..+++.+.++++|+|+++++
T Consensus 309 ~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~-~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~ 387 (823)
T PLN03192 309 RTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFK-AESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSR 387 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-hccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCH
Confidence 9999999999999999999999999999999 99996 44678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCC
Q 007465 431 ALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDS 509 (603)
Q Consensus 431 ~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~ 509 (603)
+++.+|+..++++.|+|||.|+.+||.++++|||.+|.|+++..+++++. .+..+ +|++|||.+++ .. .
T Consensus 388 ~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~--~l~~l~~Gd~FGE~~~l---~~-----~ 457 (823)
T PLN03192 388 EILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKER--VVGTLGCGDIFGEVGAL---CC-----R 457 (823)
T ss_pred HHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcce--eeEEccCCCEecchHHh---cC-----C
Confidence 99999999999999999999999999999999999999999875554432 24567 99999999883 32 1
Q ss_pred CCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHH
Q 007465 510 SSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARF 557 (603)
Q Consensus 510 ~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~ 557 (603)
+++++++|.++|+++.|++++|.++++..+..++.++.+...
T Consensus 458 ------p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~ 499 (823)
T PLN03192 458 ------PQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQ 499 (823)
T ss_pred ------CCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 477899999999999999999999999555555555555543
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-61 Score=497.23 Aligned_cols=470 Identities=17% Similarity=0.256 Sum_probs=371.5
Q ss_pred ceeecCCCchh-hHHHHHHHHHHHhhccceEEEEEEcCCceeEEEcCcchhHHHHHHHHHHHHHHHHHHHHhCcc-ccCC
Q 007465 52 KKIFDTHGSYG-NWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIEFDNDLWIAASACRSVFDLFYIIDNVFRLHTG-ISKS 129 (603)
Q Consensus 52 ~~ii~P~s~~~-~~~~~~~~~i~~~~~p~f~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~-~~~~ 129 (603)
+-||--...|+ .|+.++.|+. ||..++.|+...|--.......|.++|.++|++|++||++||+|. +-+|
T Consensus 207 PHIiLHYcaFKt~WDWvIL~LT--------FYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPg 278 (971)
T KOG0501|consen 207 PHIILHYCAFKTIWDWVILILT--------FYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPG 278 (971)
T ss_pred CeEEEeeehhhhHHHHHHHHHH--------HHHHheeeeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCC
Confidence 45666678888 6766665554 566666677777643333456789999999999999999999999 9999
Q ss_pred Ccc--ccc--------chhHHHHHhhcChhHHHHHHHHhhcccccchhhh-HHHHHHHHHHHHHHHHHHHHHhccccchh
Q 007465 130 SRK--RSW--------LLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFA-VKFFLFQHVLRTIQIYRVYMKAQVPSRHA 198 (603)
Q Consensus 130 ~~V--d~k--------~~F~iDlls~lP~~~l~~i~~~~~~~~~~~~~~~-Lr~~~~~~l~RllRi~rl~~~~~~~~~~~ 198 (603)
++| ||+ +||++|++|++|+|.+. .+-.. ..+-.++.. |+ +.||+|+.|+.++++++ .
T Consensus 279 GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~n-aF~~~--degI~SLFSaLK------VVRLLRLGRVaRKLD~Y---l 346 (971)
T KOG0501|consen 279 GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFN-AFERD--DEGIGSLFSALK------VVRLLRLGRVARKLDHY---L 346 (971)
T ss_pred CceecChhHHhHHHHHHHHHHHHHhcccHHHHH-Hhhcc--cccHHHHHHHHH------HHHHHHHHHHHHHHHHH---H
Confidence 887 987 99999999999999987 44211 112223322 44 78888899999898876 4
Q ss_pred hhh-HH--H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCcccccCCCcccccccccccCCCCCCCCcccc
Q 007465 199 ELA-LG--F-SFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTIFDF 274 (603)
Q Consensus 199 e~~-~~--~-l~~~~l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~ 274 (603)
||. +. + ++.|++++||+||+||.+|-..- ...-.+....++|+-.... .-+.+|+|
T Consensus 347 EYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL~kLa~---~~~tpY~~ 406 (971)
T KOG0501|consen 347 EYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWLWKLAN---DIGTPYNY 406 (971)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHHHHHHh---hcCCCcee
Confidence 887 44 3 67888999999999999994200 0000112345788765321 12334444
Q ss_pred ccchhccccCc-ccccchHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-
Q 007465 275 GIFSDAFQSGV-VETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI- 352 (603)
Q Consensus 275 gi~~~~~~~~~-~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~- 352 (603)
.. + ..|+ +..++..+.|+.|+||.++.|||||+|.|.|.|+.|++|++++|++|+++||.++|+|+.|+|+|.+
T Consensus 407 ~~--s--~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~ 482 (971)
T KOG0501|consen 407 NL--S--NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSN 482 (971)
T ss_pred cc--C--CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 20 0 1111 2456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhhhhchHH
Q 007465 353 LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKA 431 (603)
Q Consensus 353 ~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~ 431 (603)
...|++.++.+.+||+-..+|+.|.+||-+| --.|..++|+|-+++|...|+++|.+|..|++.+..+..|.|+-.|+.
T Consensus 483 T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDG 562 (971)
T KOG0501|consen 483 TNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDG 562 (971)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccch
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCC
Q 007465 432 LLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSS 510 (603)
Q Consensus 432 ~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~ 510 (603)
.++.|+..++..+..|||.|++.||..|.++||++|.+++..+|. . ++++ .||+||+..- - .. .
T Consensus 563 CLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-V-----VAILGKGDVFGD~FW--K-~~-----t- 627 (971)
T KOG0501|consen 563 CLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-V-----VAILGKGDVFGDEFW--K-EN-----T- 627 (971)
T ss_pred hHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc-E-----EEEeecCccchhHHh--h-hh-----h-
Confidence 999999999999999999999999999999999999999997543 1 3788 9999999843 1 11 1
Q ss_pred CCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhh-ccccCCCcccchhhhccCC
Q 007465 511 SSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGA-IKGTFLPSTRTAETSTQEQ 583 (603)
Q Consensus 511 ~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~-~~r~~~~~~~~a~er~~~~ 583 (603)
+..+.++|+|+++|++..|.|+.+.+++++...|+..|..++..-+.+.++ .-|.++...+..|+|.+.-
T Consensus 628 ---~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~LTyNLr~RiiFRKvaDVKrEkE~~~krK 698 (971)
T KOG0501|consen 628 ---LGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLTLTYNLRHRIIFRKVADVKREKELRAKRK 698 (971)
T ss_pred ---hhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhceeeEeeccceeeeeehhhhhhhHHHHHhhc
Confidence 114788999999999999999999999996655555555554433322222 2244555556666665433
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-56 Score=465.24 Aligned_cols=413 Identities=15% Similarity=0.237 Sum_probs=339.3
Q ss_pred ceeecCCC-chh-hHHHHHHHHHHHhhccceEEEEEEcCCceeEE-EcCcchhHHHHHHHHHHHHHHHHHH-HHhCcc-c
Q 007465 52 KKIFDTHG-SYG-NWVFLVWCVIVIFVDTWFLYIPMVNGDKKCIE-FDNDLWIAASACRSVFDLFYIIDNV-FRLHTG-I 126 (603)
Q Consensus 52 ~~ii~P~s-~~~-~~~~~~~~~i~~~~~p~f~y~~~i~~~~~~~~-~~~~~~~~~~~~~~~~D~~f~~Di~-l~f~t~-~ 126 (603)
+..|||.+ +++ .|.++++.... ++-++| |.+..|. ...+....|.+.|++||++|++||+ ++-|.. .
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~-------~N~w~I-PlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fv 288 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFN-------WNCWFI-PLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFV 288 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHh-------hceeEE-eeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheee
Confidence 66899999 677 77777664443 444444 6666663 3334566799999999999999996 666766 5
Q ss_pred cCCCcc-ccc---------chhHHHHHhhcChhHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007465 127 SKSSRK-RSW---------LLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQIYRVYMKAQVPSR 196 (603)
Q Consensus 127 ~~~~~V-d~k---------~~F~iDlls~lP~~~l~~i~~~~~~~~~~~~~~~Lr~~~~~~l~RllRi~rl~~~~~~~~~ 196 (603)
..|..| |.+ ..|-+|++|++|+|++++.+ +. . ..+ |++|++|+..++......++
T Consensus 289 rgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~----G~---~--p~w------R~~R~lK~~sF~e~~~~Le~ 353 (815)
T KOG0499|consen 289 RGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFF----GF---N--PMW------RANRMLKYTSFFEFNHHLES 353 (815)
T ss_pred eCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHh----cc---c--hhh------hhhhHHHHHHHHHHHHHHHH
Confidence 556666 443 78999999999999998322 11 0 123 47888888888877666544
Q ss_pred hhhhh-HH--H-HHHHH-HHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCcccccCCCcccccccccccCCCCCCCCc
Q 007465 197 HAELA-LG--F-SFSYI-QTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLNGFCPTNNQNSTI 271 (603)
Q Consensus 197 ~~e~~-~~--~-l~~~~-l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~ 271 (603)
+...+ +. . ...|| ++.|+.||+||+.+- | .+.+.+.|+.+
T Consensus 354 i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sa--------------------y----qglG~~rWVyd----------- 398 (815)
T KOG0499|consen 354 IMSKAYIYRVIRTTGYLLYILHINACVYYWASA--------------------Y----QGLGTTRWVYD----------- 398 (815)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHh--------------------h----cccccceeEEc-----------
Confidence 33333 22 3 56676 779999999998873 1 14567889852
Q ss_pred cccccchhccccCcccccchHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007465 272 FDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGS 351 (603)
Q Consensus 272 ~~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~ 351 (603)
+-+..|++|+|||+.|++|+|- .-.|+|..|++|..+.-+.|+++||.+||+|-.++.+.+
T Consensus 399 ------------------g~Gn~YiRCyyfa~kt~~tiG~-~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt 459 (815)
T KOG0499|consen 399 ------------------GEGNEYIRCYYFAVKTLITIGG-LPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAAT 459 (815)
T ss_pred ------------------CCCCceeeehhhHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2335799999999999999995 556789999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhhhhch
Q 007465 352 I-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWR 429 (603)
Q Consensus 352 ~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls 429 (603)
. +.+||..||+.-.||+..+||.+.|+|||.+ +|.|+.++..||.++++.||..||.+++..++..+|.++.+|++|+
T Consensus 460 ~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cd 539 (815)
T KOG0499|consen 460 ANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCD 539 (815)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhH
Confidence 9 9999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCC
Q 007465 430 KALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTD 508 (603)
Q Consensus 430 ~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~ 508 (603)
.+.+..++.+++.+.|.|||+|++.||++++||+|..|.|+|....+++.. +.+| +|++|||++++ +..+
T Consensus 540 r~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~V---l~tL~~GsVFGEISLL-aigG----- 610 (815)
T KOG0499|consen 540 RQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKV---LVTLKAGSVFGEISLL-AIGG----- 610 (815)
T ss_pred HHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEE---EEEecccceeeeeeee-eecC-----
Confidence 999999999999999999999999999999999999999999986655553 4788 99999999993 3222
Q ss_pred CCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHH
Q 007465 509 SSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAA 555 (603)
Q Consensus 509 ~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~ 555 (603)
. ++||++|+|.++|.++.|+++|+.+++...+.-.+.+...|
T Consensus 611 ---~--nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkA 652 (815)
T KOG0499|consen 611 ---G--NRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKA 652 (815)
T ss_pred ---C--CccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHH
Confidence 1 37999999999999999999999999995443333333333
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.8e-13 Score=143.79 Aligned_cols=182 Identities=18% Similarity=0.213 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCcccccchhHHHHHhhcChhHHHHHHHHhhcccc--cchhhhH-HHHHHHHH
Q 007465 102 AASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRG--TEFSFAV-KFFLFQHV 178 (603)
Q Consensus 102 ~~~~~~~~~D~~f~~Di~l~f~t~~~~~~~Vd~k~~F~iDlls~lP~~~l~~i~~~~~~~~~--~~~~~~L-r~~~~~~l 178 (603)
.+.+++++|-++|-++.+++|-.+-++-.- =++.-=++|++|++||.+=.+.. ...+ ...+..+ +.+|++|+
T Consensus 241 ~l~~vE~vCi~WFT~E~llR~~~~P~k~~F-~k~pLNIIDllAIlPFYielll~----~~~~~~~~~l~~~~~vvrvlR~ 315 (477)
T KOG3713|consen 241 ILTYVETVCIAWFTFEYLLRFLVAPNKLEF-FKSPLNIIDLLAILPFYLELLLT----LFGGESLKELENAGLVVRVLRV 315 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCchHHHH-HhCcchHHHHHHHHHHHHHHHHH----HhccchHHHHhhhhhhHHHHHH
Confidence 477999999999999999999633100000 00134579999999998754221 1111 1111111 22333334
Q ss_pred HHHHHHHHHHHHhccccc---hhhhh-HH---H--HHHHH-HHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCccccc
Q 007465 179 LRTIQIYRVYMKAQVPSR---HAELA-LG---F--SFSYI-QTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYC 248 (603)
Q Consensus 179 ~RllRi~rl~~~~~~~~~---~~e~~-~~---~--l~~~~-l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~~ 248 (603)
+|++|++++.+. ..| +-.|. .. + |++|+ +..-++|-+-|++-..
T Consensus 316 lRI~RI~KLaRh---S~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~----------------------- 369 (477)
T KOG3713|consen 316 LRILRIFKLARH---STGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKD----------------------- 369 (477)
T ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------------------
Confidence 444444333322 223 22232 22 3 33333 4466667666654421
Q ss_pred CCCcccccccccccCCCCCCCCccccccchhccccCcccccchHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHH
Q 007465 249 DDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICI 328 (603)
Q Consensus 249 ~~~~~~~~Wl~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~ 328 (603)
+. .+ +|. |.. .|+|||+.|||||||||++|.|...++++..+
T Consensus 370 --~~----------------~~--~Ft--------------SIP----a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~c 411 (477)
T KOG3713|consen 370 --EP----------------DT--KFT--------------SIP----AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLC 411 (477)
T ss_pred --CC----------------CC--CCc--------------ccc----chhheeeEEEeeecccCccccccchHHHHHHH
Confidence 00 00 110 111 37999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 329 TACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 329 ~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
.+.|+++.|+-|..|-+=+.....
T Consensus 412 il~GVLvlAlPItiIv~nF~~~y~ 435 (477)
T KOG3713|consen 412 ILCGVLVLALPITIIVNNFSMYYS 435 (477)
T ss_pred HHHhHHHhhcchHhHhhhHHHHHH
Confidence 999999999877666655554444
No 7
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.48 E-value=1.4e-13 Score=137.76 Aligned_cols=168 Identities=12% Similarity=0.058 Sum_probs=127.1
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeec
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGE 494 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe 494 (603)
.+.++.+|+|+.++++.++.+....+.+.|++|+.|+++|+.++.+|+|.+|.++++...+++.. .+..+ +|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~--~i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRET--TLAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceE--EEEEeCCCchhhh
Confidence 45789999999999999999999999999999999999999999999999999999974433331 23555 9999999
Q ss_pred hhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCccc
Q 007465 495 ELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTR 574 (603)
Q Consensus 495 ~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~ 574 (603)
.++ +.. . ++.++++|+++|+++.+++++|.+++...+.+.+.++.....+. ....++.......
T Consensus 84 ~~~---~~~-----~------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~--~~~~~~~~~~~~~ 147 (236)
T PRK09392 84 AAV---VLD-----A------PYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCY--RGLVKSLKNQKLR 147 (236)
T ss_pred HHH---hCC-----C------CCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHhhcC
Confidence 977 333 2 36679999999999999999999999855555555554443222 1224555566678
Q ss_pred chhhhccCCCCc-----ccccchhhhh--hhhcc
Q 007465 575 TAETSTQEQVPP-----TIRSKQLVET--QIIAK 601 (603)
Q Consensus 575 ~a~er~~~~~~~-----~~~~~~~~~~--~~ia~ 601 (603)
++++|+..++-. .......+|+ ++||.
T Consensus 148 ~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~ 181 (236)
T PRK09392 148 SSAERLANYLLKQSLRQGGADVVTLPYEKRVLAS 181 (236)
T ss_pred CHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHH
Confidence 899998776421 1222345664 67885
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.40 E-value=1.9e-12 Score=127.05 Aligned_cols=160 Identities=8% Similarity=0.028 Sum_probs=117.5
Q ss_pred hhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhhcc
Q 007465 426 GKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQDA 503 (603)
Q Consensus 426 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l~~ 503 (603)
+.+|++.++.++..++.+.|++|++|+.+|+.++.+|||.+|.++++..+ +|++. ....+ +|++||+..++ .+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~~---~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEM--ILSYLNQGDFIGELGLF---EE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEEeehhhc---cC
Confidence 45799999999999999999999999999999999999999999999643 33331 23455 99999999773 32
Q ss_pred cCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCC
Q 007465 504 CTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQ 583 (603)
Q Consensus 504 ~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~ 583 (603)
.. +++.+++|.++|+++.+++++|.+++...+.+...+++....+. ....++...+...++++|+...
T Consensus 81 -----~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~Rl~~~ 148 (211)
T PRK11753 81 -----GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRL--QNTSRKVGDLAFLDVTGRIAQT 148 (211)
T ss_pred -----CC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHhcChhhHHHHH
Confidence 11 36678999999999999999999999965555544444333222 1224555667778888887543
Q ss_pred CC---------cccc-cchhhhhhhhccc
Q 007465 584 VP---------PTIR-SKQLVETQIIAKE 602 (603)
Q Consensus 584 ~~---------~~~~-~~~~~~~~~ia~~ 602 (603)
+- ..|+ +..++++++||+.
T Consensus 149 L~~l~~~~~~~~~~~~~~~~~t~~~lA~~ 177 (211)
T PRK11753 149 LLDLAKQPDAMTHPDGMQIKITRQEIGRI 177 (211)
T ss_pred HHHHHHhcCCcCCCCceecCCCHHHHHHH
Confidence 11 1122 2347888999974
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.34 E-value=8.2e-12 Score=120.19 Aligned_cols=189 Identities=16% Similarity=0.198 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHhCcc-ccCCCcccccchhHHHHHhhcChhHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 007465 105 ACRSVFDLFYIIDNVFRLHTG-ISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQHVLRTIQ 183 (603)
Q Consensus 105 ~~~~~~D~~f~~Di~l~f~t~-~~~~~~Vd~k~~F~iDlls~lP~~~l~~i~~~~~~~~~~~~~~~Lr~~~~~~l~RllR 183 (603)
++|.++|++|.+|+++++++. .... .-=++.|.++|+++++|..... +. +..+..+....+++.+++|+.|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~-~y~~~~~~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRR-RYFRSWWNWFDFISVIPSIVSV-IL---RSYGSASAQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-G-CCCCSHHHHHHHHHHHHHCCHH-CC---HCSS--HHCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHH-HHhcChhhcccccccccccccc-cc---cccccccccceEEEEEeeccccccc
Confidence 478899999999999999976 4400 0011278889999999997655 21 1111110001244444333444444
Q ss_pred HHHHHHHhccccc-hhhhhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCcccccCCCcccccccc
Q 007465 184 IYRVYMKAQVPSR-HAELALG---FSFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDDHLEDRKFLN 259 (603)
Q Consensus 184 i~rl~~~~~~~~~-~~e~~~~---~l~~~~l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~~~~~Wl~ 259 (603)
+.|..+.+.+... +...... ++++++++.|++||+++.+.......|+. .++-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~----------------------~~~~~ 133 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD----------------------PTWDS 133 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------------------------SS-
T ss_pred cccccccccccccccccccccccccccccccccccccchhheecccccccccc----------------------ccccc
Confidence 4443332222211 1111111 25566688999999999887532211110 00000
Q ss_pred cccCCCCCCCCccccccchhccccCcccccchHHHHHHHHHHHhhhccccccCCCCCC-----ChhHHHHH-HHHHHHHH
Q 007465 260 GFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTST-----NPWENIFA-ICITACGV 333 (603)
Q Consensus 260 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~-----~~~E~~~~-i~~~i~G~ 333 (603)
. . . ....+..+.|..|+||+++++|+.|+||..+. +..+.++. ++..+.+.
T Consensus 134 ~--~------~---------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 190 (200)
T PF00520_consen 134 E--N------D---------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSI 190 (200)
T ss_dssp --------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred c--c------c---------------cccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHH
Confidence 0 0 0 12345677899999999999999999999886 88999999 55556666
Q ss_pred HHHHHHHHHH
Q 007465 334 WLLVILVGKI 343 (603)
Q Consensus 334 ~~fa~iig~i 343 (603)
++++.++|.|
T Consensus 191 ~l~nlliavi 200 (200)
T PF00520_consen 191 LLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 8899999875
No 10
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.8e-12 Score=129.73 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=42.1
Q ss_pred HHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 298 CFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQ 344 (603)
Q Consensus 298 slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~ 344 (603)
|||||++|||||||||..|.|+..+++..++.+.|++-.|.-+--|.
T Consensus 397 aFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIV 443 (507)
T KOG1545|consen 397 AFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIV 443 (507)
T ss_pred cceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEE
Confidence 69999999999999999999999999999999999998877554433
No 11
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.31 E-value=4.5e-12 Score=126.64 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=117.8
Q ss_pred hhcchhhhhchHHHHHHHHhhceE-EEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeech
Q 007465 419 LKKVEEFGKWRKALLDDLCEFVKP-VVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEE 495 (603)
Q Consensus 419 L~~v~lF~~ls~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~ 495 (603)
+++.+.|..+++++++.|....+. +.|++|+.|+++||.++++|+|.+|.|+++..+ +|++. .+..+ +|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~--i~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQ--ITGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEE--EEEeccCCceeccc
Confidence 445555557999999999988864 679999999999999999999999999999843 33431 13445 99999987
Q ss_pred hhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccc
Q 007465 496 LVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRT 575 (603)
Q Consensus 496 ~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~ 575 (603)
++ +.. ....+++|+++|+++.+++++|.+++...+.+...+.+.+..+. ...+++...+...+
T Consensus 93 ~~---~~~------------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 155 (235)
T PRK11161 93 AI---GSG------------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEI--KGDQEMILLLSKKN 155 (235)
T ss_pred cc---cCC------------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHH--HHHHHHHHHHhCCC
Confidence 54 222 13347999999999999999999999855555555554443222 22245555666788
Q ss_pred hhhhccCCCCcccc-----------cchhhhhhhhcc
Q 007465 576 AETSTQEQVPPTIR-----------SKQLVETQIIAK 601 (603)
Q Consensus 576 a~er~~~~~~~~~~-----------~~~~~~~~~ia~ 601 (603)
+++|...++..-++ +...+++++||.
T Consensus 156 ~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~ 192 (235)
T PRK11161 156 AEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGN 192 (235)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHH
Confidence 99997766543221 223578889986
No 12
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.21 E-value=1.9e-11 Score=128.11 Aligned_cols=117 Identities=18% Similarity=0.312 Sum_probs=101.6
Q ss_pred HHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCC
Q 007465 412 SELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCN 490 (603)
Q Consensus 412 ~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~ 490 (603)
.+.+.++|+++|+|+++|++.+.++++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+......+.++ .||
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd 346 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGD 346 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccc
Confidence 4567889999999999999999999999999999999999999999999999999999999854433322235677 999
Q ss_pred eeechhhhhhhcccCcCCCCCCCCCCcceEEEEece-EEEEEeCHHhHHHHHh
Q 007465 491 ICGEELVAWAQDACTRTDSSSSALPISTITIQALTK-VEAFILMADDLKNVLL 542 (603)
Q Consensus 491 ~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~-~~l~~L~~~df~~ll~ 542 (603)
+|||-+++ .. ..|++++.|.+. ++++.|+++.|..++.
T Consensus 347 ~FGE~al~---~e-----------dvRtAniia~~~gv~cl~lDresF~~liG 385 (732)
T KOG0614|consen 347 YFGERALL---GE-----------DVRTANIIAQAPGVECLTLDRESFKKLIG 385 (732)
T ss_pred hhhHHHhh---cc-----------CccchhhhccCCCceEEEecHHHHHHhcc
Confidence 99999984 22 158999999988 9999999999999987
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.20 E-value=4.1e-11 Score=119.14 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=104.0
Q ss_pred HHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhhcccCcC
Q 007465 430 KALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQDACTRT 507 (603)
Q Consensus 430 ~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~ 507 (603)
+-+..++....+.+.|++|+.|+.+||+++.+|||.+|.|+++..+ +|++. .+..+ +|++||+.+++ ..
T Consensus 21 ~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~--~~~~~~~g~~~G~~~~~---~~---- 91 (226)
T PRK10402 21 DCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVS--LIDFFAAPCFIGEIELI---DK---- 91 (226)
T ss_pred hcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEe--eeeecCCCCeEEeehhh---cC----
Confidence 3344467788889999999999999999999999999999999742 33431 23455 99999999762 32
Q ss_pred CCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCCCCcc
Q 007465 508 DSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVPPT 587 (603)
Q Consensus 508 ~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~~~~~ 587 (603)
. +++.+++|+++|+++.+++++|.+++...+.+...+++....+. .............++++|...++-..
T Consensus 92 -~------~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~Rla~~L~~~ 162 (226)
T PRK10402 92 -D------HETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKN--YRNIVSLTQNQSFPLENRLAAFILLT 162 (226)
T ss_pred -C------CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHH--HHHHHHHHHhccChHHHHHHHHHHhc
Confidence 1 36679999999999999999999999855544444444333221 01122233333457888877654321
Q ss_pred --cccchhhhhhhhcc
Q 007465 588 --IRSKQLVETQIIAK 601 (603)
Q Consensus 588 --~~~~~~~~~~~ia~ 601 (603)
.... ..++++||.
T Consensus 163 ~~~~~~-~~t~~~lA~ 177 (226)
T PRK10402 163 QEGDLY-HEKHTQAAE 177 (226)
T ss_pred ccCCcc-cchHHHHHH
Confidence 1111 136777775
No 14
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.16 E-value=2.5e-10 Score=99.06 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=87.7
Q ss_pred hhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhh
Q 007465 424 EFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQ 501 (603)
Q Consensus 424 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l 501 (603)
+|+.++++.++.++..++.+.+.+|++|+.+|+..+.+|+|.+|.++++..+ +|++. ....+ +|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQ--IVGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEecCCccCcChHHHh---
Confidence 4778999999999999999999999999999999999999999999998744 22221 13455 99999999773
Q ss_pred cccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcc
Q 007465 502 DACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIK 544 (603)
Q Consensus 502 ~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~ 544 (603)
.. . ++..+++|.++|+++.+++++|.+++...
T Consensus 76 ~~-----~------~~~~~~~a~~~~~~~~i~~~~~~~~~~~~ 107 (115)
T cd00038 76 GN-----G------PRSATVRALTDSELLVLPRSDFRRLLQEY 107 (115)
T ss_pred cC-----C------CCCceEEEcCceEEEEEeHHHHHHHHHHC
Confidence 22 1 35668999999999999999999998733
No 15
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.11 E-value=1.6e-10 Score=115.28 Aligned_cols=146 Identities=14% Similarity=0.039 Sum_probs=107.3
Q ss_pred HHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCC
Q 007465 435 DLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSS 512 (603)
Q Consensus 435 ~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~ 512 (603)
.++...+.+.|++|++|+.+||.++.+|||.+|.|+++..+ +|++. ....+ +|++||+.. ..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~--i~~~~~~Gd~fG~~~-----~~--------- 96 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQ--IGAFHLPGDVFGLES-----GS--------- 96 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEEecCCceecccC-----CC---------
Confidence 45667788999999999999999999999999999999732 33331 13455 999999641 11
Q ss_pred CCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCCCCc------
Q 007465 513 ALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVPP------ 586 (603)
Q Consensus 513 ~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~~~~------ 586 (603)
++..+++|+++|+++.+++++|.+++...+.+.+.+.+....+. ....++...+...++++|...++..
T Consensus 97 ---~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l--~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g 171 (230)
T PRK09391 97 ---THRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGL--RHAQDHMLLLGRKTAMERVAAFLLEMDERLG 171 (230)
T ss_pred ---cCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 25569999999999999999999999966677776666555433 1224556667778999998765433
Q ss_pred -ccccchhhhhhhhcc
Q 007465 587 -TIRSKQLVETQIIAK 601 (603)
Q Consensus 587 -~~~~~~~~~~~~ia~ 601 (603)
.+.+.-.+++++||.
T Consensus 172 ~~~~i~i~lt~~~IA~ 187 (230)
T PRK09391 172 GAGMMALPMSRRDIAD 187 (230)
T ss_pred CCCEEEecCCHHHHHH
Confidence 123334567888886
No 16
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.09 E-value=3.6e-10 Score=110.15 Aligned_cols=145 Identities=15% Similarity=0.122 Sum_probs=102.9
Q ss_pred hcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhh
Q 007465 420 KKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELV 497 (603)
Q Consensus 420 ~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l 497 (603)
...+.|...+++....+....+.+.+++|+.|+++||+++.+|+|.+|.++++... +|++. .+..+ +|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREI--ILGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEE--EEEEecCCchhhhHHH
Confidence 34566666777777778788999999999999999999999999999999999843 33331 13455 9999999988
Q ss_pred hhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchh
Q 007465 498 AWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAE 577 (603)
Q Consensus 498 ~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~ 577 (603)
+ .. . +++++++|+++|+++.+++++|.+++...+.+...+......+.. ....+.......+++
T Consensus 81 ~---~~-----~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~--~~~~~~~~~~~~~~~ 144 (214)
T COG0664 81 L---GG-----D------PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLR--QALERLSLLARKDVE 144 (214)
T ss_pred h---cC-----C------CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHH--HHHHHHHHHhhccHH
Confidence 3 32 1 377899999999999999999999988622344434333322221 112233333455666
Q ss_pred hhccC
Q 007465 578 TSTQE 582 (603)
Q Consensus 578 er~~~ 582 (603)
+|...
T Consensus 145 ~r~~~ 149 (214)
T COG0664 145 ERLAR 149 (214)
T ss_pred HHHHH
Confidence 66443
No 17
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=1.5e-10 Score=116.81 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=94.7
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeec
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGE 494 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe 494 (603)
.+.+++.-+|++++++.+..+...|.++.++.|+.|+++|+.++.+|+|.+|.+++|.. + +. +..+ +|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~-~-~~----v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN-G-TY----VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC-C-eE----EeeeCCCCchhh
Confidence 45677888999999999999999999999999999999999999999999999999984 2 22 3566 9999999
Q ss_pred hhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 495 ELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 495 ~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
.+++++ ++|++|+.|.+++.+|.|++..|..++-
T Consensus 195 lALmyn--------------~PRaATv~a~t~~klWgldr~SFrrIi~ 228 (368)
T KOG1113|consen 195 LALMYN--------------PPRAATVVAKSLKKLWGLDRTSFRRIIM 228 (368)
T ss_pred hHhhhC--------------CCcccceeeccccceEEEeeceeEEEee
Confidence 999522 2699999999999999999999987765
No 18
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.08 E-value=1.2e-09 Score=95.32 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=86.7
Q ss_pred hhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhh
Q 007465 424 EFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQ 501 (603)
Q Consensus 424 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l 501 (603)
+|.+++++.+++++..++.+.+++|++|+++|+.++.+|||.+|.++++..+ +++.. ....+ +|++||+..++ .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~~-~- 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQ--ILGILGPGDFFGELALL-T- 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceE--EEEeecCCceechhhhc-c-
Confidence 4788999999999999999999999999999999999999999999999753 22221 23455 99999999772 0
Q ss_pred cccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 502 DACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 502 ~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
.. .. ++..+++|.++|+++.++.+++.+.+.
T Consensus 77 ~~-----~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~ 107 (120)
T smart00100 77 NS-----RR-----AASATAVALELATLLRIDFRDFLQLLQ 107 (120)
T ss_pred CC-----Cc-----ccceEEEEEeeEEEEccCHHHHHHHHH
Confidence 11 11 356689999999999999999998886
No 19
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.08 E-value=9.6e-11 Score=122.99 Aligned_cols=112 Identities=17% Similarity=0.312 Sum_probs=100.4
Q ss_pred HHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CC
Q 007465 411 KSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DC 489 (603)
Q Consensus 411 ~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G 489 (603)
..++..+.+++..|+++++.+.+.+++.+|.+..|.+|++|+++||+++++|.+.+|+++|.. +|+. +..+ +|
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~~g 221 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMGAG 221 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccCCc
Confidence 456667888899999999999999999999999999999999999999999999999999987 3333 3667 99
Q ss_pred CeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 490 NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 490 ~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
..|||.+++ ..| .||++|+|+++|.+|.|+|+.|+.++.
T Consensus 222 tvFGELAIL---ync-----------tRtAsV~alt~~~lWaidR~vFq~IM~ 260 (732)
T KOG0614|consen 222 TVFGELAIL---YNC-----------TRTASVRALTDVRLWAIDREVFQAIMM 260 (732)
T ss_pred hhhhHHHHH---hCC-----------cchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999994 443 599999999999999999999999997
No 20
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.07 E-value=7.8e-10 Score=92.51 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=70.1
Q ss_pred EEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceE
Q 007465 442 PVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTIT 520 (603)
Q Consensus 442 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~t 520 (603)
.+.|++|++|+++|+.++++|||.+|.++++..+...... ....+ +|++||+.+++ .. . ++..+
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~---~~-----~------~~~~~ 65 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELL---TG-----K------PSPFT 65 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHH---HT-----S------BBSSE
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeec---CC-----C------ccEEE
Confidence 3689999999999999999999999999999854332210 13455 99999999884 33 1 36779
Q ss_pred EEEeceEEEEEeCHHhHHHHHh
Q 007465 521 IQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 521 v~Al~~~~l~~L~~~df~~ll~ 542 (603)
++|.++|+++.|++++|.++++
T Consensus 66 ~~a~~~~~~~~i~~~~~~~~~~ 87 (91)
T PF00027_consen 66 VIALTDSEVLRIPREDFLQLLQ 87 (91)
T ss_dssp EEESSSEEEEEEEHHHHHHHHH
T ss_pred EEEccCEEEEEEeHHHHHHHHH
Confidence 9999999999999999999986
No 21
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.06 E-value=6.5e-10 Score=117.41 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccCc
Q 007465 291 FKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFR 370 (603)
Q Consensus 291 ~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~i~~~m~~~ 370 (603)
-+.-|-.|+||++.|||||||||++|+|...++.+.++.++|..+||.--|.+++=++-.-+ ++.+ =++|-+.+
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ-eq~R-----QKHf~rrr 339 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ-EQHR-----QKHFNRRR 339 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH-HHHH-----HHHHHhhc
Confidence 45678889999999999999999999999999999999999999999988888876643322 2211 24666788
Q ss_pred cCCHHHHHHHHHh
Q 007465 371 KLSQNLQQQIKYH 383 (603)
Q Consensus 371 ~lp~~L~~rvr~y 383 (603)
+...+|-+=.-+|
T Consensus 340 ~pAA~LIQc~WR~ 352 (654)
T KOG1419|consen 340 NPAASLIQCAWRY 352 (654)
T ss_pred chHHHHHHHHHHH
Confidence 8888887777666
No 22
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.05 E-value=1.5e-09 Score=117.73 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=93.0
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCC-CcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEG-ITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l-~G~~fG 493 (603)
.+.++++++|++++++.+++++..++.+.|++|++|+++||.++.+|+|.+|.|+++..++ ++. .+..+ +|++||
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~---~l~~l~~Gd~fG 83 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESR---PEFLLKRYDYFG 83 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcE---EEEEeCCCCEee
Confidence 4568899999999999999999999999999999999999999999999999999998543 222 24566 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
+. + .. . .+.++++|.++|+++.|++++|..+..
T Consensus 84 ~~-l----~~-----~------~~~~~~~A~~d~~v~~ip~~~~~~~~~ 116 (413)
T PLN02868 84 YG-L----SG-----S------VHSADVVAVSELTCLVLPHEHCHLLSP 116 (413)
T ss_pred hh-h----CC-----C------CcccEEEECCCEEEEEEcHHHHhhhcc
Confidence 75 3 22 1 477799999999999999999998877
No 23
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.01 E-value=9.1e-10 Score=90.61 Aligned_cols=55 Identities=15% Similarity=0.343 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTK 348 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 348 (603)
.|..|+||++.|+||+||||+.|.++.+++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566899999999999999999999999999999999999999999999999875
No 24
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.98 E-value=2.2e-09 Score=104.55 Aligned_cols=82 Identities=18% Similarity=0.112 Sum_probs=65.5
Q ss_pred hceEEEecCCcEEEeCCC--ccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCC
Q 007465 439 FVKPVVFMENSYIVPEGG--SIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSAL 514 (603)
Q Consensus 439 ~l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~ 514 (603)
.++.+.|++|++|+++|| .++.+|+|.+|.|+++..+ +|++. .+..+ +|++||+.++ +..
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~--~l~~~~~Gd~~G~~~~---~~~----------- 68 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNAL--TLRYVRPGEYFGEEAL---AGA----------- 68 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCeechHHh---cCC-----------
Confidence 467889999999999999 7799999999999999743 33431 23555 9999999755 222
Q ss_pred CCcceEEEEeceEEEEEeCHHhH
Q 007465 515 PISTITIQALTKVEAFILMADDL 537 (603)
Q Consensus 515 ~~r~~tv~Al~~~~l~~L~~~df 537 (603)
+++.+++|+++|+++.+++++|
T Consensus 69 -~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 69 -ERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred -CCCceEEEcCceEEEEEEHHHc
Confidence 3566899999999999999876
No 25
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.95 E-value=1.7e-09 Score=104.42 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=94.1
Q ss_pred CcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEec
Q 007465 448 NSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALT 525 (603)
Q Consensus 448 ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~ 525 (603)
|+.|+++||.++.+|+|.+|.|+++.. ++|++. .+..+ +|++||+.+++ .. .+ .++..+++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~--~l~~~~~g~~~G~~~~~---~~-----~~----~~~~~~~~A~~ 66 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEI--TVALLRENSVFGVLSLI---TG-----HR----SDRFYHAVAFT 66 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEe--eeEEccCCCEeeeeeec---cC-----CC----CccceEEEEec
Confidence 789999999999999999999999973 334441 23556 99999998773 32 21 02456899999
Q ss_pred eEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCCCC-----------cccccchhh
Q 007465 526 KVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVP-----------PTIRSKQLV 594 (603)
Q Consensus 526 ~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~~~-----------~~~~~~~~~ 594 (603)
+|+++.+++++|.+++...+.+.+.+++....+. ....++...+...++++|...++- ....+.-.+
T Consensus 67 ~~~v~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l--~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~~ 144 (193)
T TIGR03697 67 RVELLAVPIEQVEKAIEEDPDLSMLLLQGLSSRI--LQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQRGVTIDLRL 144 (193)
T ss_pred ceEEEEeeHHHHHHHHHHChHHHHHHHHHHHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCeEEecCCC
Confidence 9999999999999999966666666665544322 112344445556677777554421 111223356
Q ss_pred hhhhhcc
Q 007465 595 ETQIIAK 601 (603)
Q Consensus 595 ~~~~ia~ 601 (603)
.+++||.
T Consensus 145 t~~~iA~ 151 (193)
T TIGR03697 145 SHQAIAE 151 (193)
T ss_pred CHHHHHH
Confidence 7788875
No 26
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.86 E-value=1.4e-08 Score=108.39 Aligned_cols=118 Identities=12% Similarity=0.154 Sum_probs=99.9
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeec
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGE 494 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe 494 (603)
.+++.+.|.|+.++++.+++|...++...|.+||.|+..|.+...+|+|.+|.|+++..+|. . ...+ +|+.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-v----~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-V----LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-e----eeeeccCccccc
Confidence 46889999999999999999999999999999999999999999999999999999986653 2 3778 9999999
Q ss_pred hhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHH
Q 007465 495 ELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFI 552 (603)
Q Consensus 495 ~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i 552 (603)
.+++ .. .+ ....+.|.+|+-+|.|+++.|.+++.-.+.+++.|.
T Consensus 81 ~~l~---~~-----~~------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~ 124 (610)
T COG2905 81 SSLF---TE-----LN------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFL 124 (610)
T ss_pred hhhc---cc-----CC------CcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHH
Confidence 8883 22 11 222678888999999999999999995556666555
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=2.4e-08 Score=101.05 Aligned_cols=113 Identities=11% Similarity=0.126 Sum_probs=100.4
Q ss_pred HHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CC
Q 007465 411 KSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DC 489 (603)
Q Consensus 411 ~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G 489 (603)
.+.++.+.|+++|+++.+.......++..+.++.|++|+.|..+|+.++.+|+|.+|.|.+....++.. ..+ .|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~-----vkl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVE-----VKLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeE-----EEechh
Confidence 466788999999999999999999999999999999999999999999999999999999987444322 367 99
Q ss_pred CeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 490 NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 490 ~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
++|||.+++ .. . +|.+++.|.+...+..++++.|+.|+.
T Consensus 309 dyfge~al~---~~-----~------pr~Atv~a~~~~kc~~~dk~~ferllg 347 (368)
T KOG1113|consen 309 DYFGELALL---KN-----L------PRAATVVAKGRLKCAKLDKPRFERLLG 347 (368)
T ss_pred hhcchHHHH---hh-----c------hhhceeeccCCceeeeeChHHHHHHhh
Confidence 999999884 32 1 588999999999999999999999997
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.60 E-value=4.4e-08 Score=103.59 Aligned_cols=127 Identities=11% Similarity=0.121 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhhccCcc
Q 007465 293 RRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGMRQKEKELEQWLPFRK 371 (603)
Q Consensus 293 ~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~-~~~~~~~~~~i~~~m~~~~ 371 (603)
--|..|+|+-++||+||||||+..+|...++|.++..+.|..+||-.+..|..++.+-++ .-+|+..- ==++--
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-----gkkhiv 361 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-----GKKHIV 361 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-----CCeeEE
Confidence 468889999999999999999999999999999999999999999999999999999887 66664321 000100
Q ss_pred CCHH-HHHHHHHh--HhhhhhccCCC-HHHHHhhchhhHHHHHHHHHHHHHhhcchhhhh
Q 007465 372 LSQN-LQQQIKYH--LHSWDETRNFN-IENLVYNLPEDLGRDIKSELCLELLKKVEEFGK 427 (603)
Q Consensus 372 lp~~-L~~rvr~y--~y~~~~~~~~~-e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ 427 (603)
+-.+ -.+.|-.| ++.......+| |--.|+..||+|.-| .++.....++.+|++
T Consensus 362 vcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 1111 12334444 33333333344 234566777776433 234444556666654
No 29
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.24 E-value=3.4e-08 Score=100.18 Aligned_cols=52 Identities=15% Similarity=0.331 Sum_probs=45.6
Q ss_pred HHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 007465 297 YCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVI----LVGKIQTYTK 348 (603)
Q Consensus 297 ~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~----iig~i~~il~ 348 (603)
.+||+.++||||+||||..|.|...++|..++.+.|+++.|. +++|.+.+..
T Consensus 359 aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 359 AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 479999999999999999999999999999999999999887 4556666544
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.16 E-value=4.1e-06 Score=89.66 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYT 347 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 347 (603)
+..|+||++.|+||+||||+.|.+...++++++++++|..+|++.++.+...+
T Consensus 169 ~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 169 LSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999887643
No 31
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.83 E-value=4.2e-05 Score=79.97 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhccccccCC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 293 RRLYYCFRWGVQSLSSFGQGL--QTSTNPWENIFAICITACGVWLLVILVGKIQTYTK 348 (603)
Q Consensus 293 ~~Y~~slYwa~~tltTvGyGd--i~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 348 (603)
..+..+|+||+.|+||||||. ++|..+.-.++.++-+++|.++.|+++|-+-+=++
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~s 140 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFS 140 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357779999999999999999 56777787888888899999999999988766443
No 32
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.57 E-value=7.9e-05 Score=80.65 Aligned_cols=58 Identities=12% Similarity=0.293 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
+..|+|++.+++||+|||++.|.|...++++|+..++|.-++..++++++..+...-.
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999999999999999999876543
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.001 Score=70.13 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccCc
Q 007465 291 FKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFR 370 (603)
Q Consensus 291 ~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~i~~~m~~~ 370 (603)
....|+.|+|.-..|..++||||+.|.|...+..++++-++|+++-|.+++-|+- +.+..+--..+++||-+.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisR-------KLeLt~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIAR-------KLELTKAEKHVHNFMMDT 356 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999988876 334444445677777777
Q ss_pred cCCHHHHHHHHHh
Q 007465 371 KLSQNLQQQIKYH 383 (603)
Q Consensus 371 ~lp~~L~~rvr~y 383 (603)
++-+++++-..+=
T Consensus 357 qLTk~~KnAAA~V 369 (489)
T KOG3684|consen 357 QLTKEHKNAAANV 369 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666554443
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.03 E-value=0.00095 Score=75.28 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=82.8
Q ss_pred HHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechhhhhhhcccCcCCC
Q 007465 432 LLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDS 509 (603)
Q Consensus 432 ~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~ 509 (603)
++..+-..+......+|+.++++||..+.+|+|.+|.++.... .+++... +..+ .||.+|+...+ .. +
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~l---t~-----~ 569 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEML---TK-----Q 569 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHh---hc-----C
Confidence 6667777788999999999999999999999999999998763 3444311 2455 99999999773 33 2
Q ss_pred CCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHH
Q 007465 510 SSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAAR 556 (603)
Q Consensus 510 ~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~ 556 (603)
+|..|+.|+.++++.+|+..-|..+..-.+...-.+++.+.
T Consensus 570 ------~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~ 610 (1158)
T KOG2968|consen 570 ------PRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLA 610 (1158)
T ss_pred ------CccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHH
Confidence 47779999999999999998887776633433333444443
No 35
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0015 Score=65.99 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQT 345 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~ 345 (603)
++..|||||.+.+||+|||-.+|.|+..++|+|+..++|+-+--..+..+++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 3456899999999999999999999999999999999998766555555544
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.13 E-value=0.085 Score=51.16 Aligned_cols=107 Identities=10% Similarity=-0.000 Sum_probs=75.3
Q ss_pred HHHHHHhhceEEEecCCcEE-EeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCC
Q 007465 432 LLDDLCEFVKPVVFMENSYI-VPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDS 509 (603)
Q Consensus 432 ~l~~L~~~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~ 509 (603)
..+.+....++..+++|..+ ..+....+..+++.+|.+.+...|+ . .+.+. +-.+||=... +.+ .
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~--l---l~~t~~aP~IlGl~~~---~~~-----~ 80 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREEN--V---LIGITQAPYIMGLADG---LMK-----N 80 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCC--e---EEEeccCCeEeecccc---cCC-----C
Confidence 55667777888899999997 4444444679999999999954333 2 12444 7778885433 122 1
Q ss_pred CCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHH
Q 007465 510 SSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARF 557 (603)
Q Consensus 510 ~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~ 557 (603)
.....++|.++|+++.+++++|.++++-++-|.....-.++.
T Consensus 81 ------~~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~~~~~l~~~ 122 (207)
T PRK11832 81 ------DIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLAWQ 122 (207)
T ss_pred ------CceEEEEEcCccEEEEeeHHHHHHHHHHhchHHHHHHHHHHH
Confidence 134579999999999999999999999666665555544443
No 37
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.013 Score=59.45 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhccccccCCCCCC-------ChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTST-------NPWEN-IFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~-------~~~E~-~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
|+.|+|+.+.|+||+|+||.+|- +..++ .++.+..++|+.+++-+++-+.-.+..++.
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67799999999999999998773 22333 566677789999998888877776666655
No 38
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.71 E-value=0.021 Score=62.58 Aligned_cols=110 Identities=15% Similarity=0.246 Sum_probs=86.4
Q ss_pred HHHHHHhhcchhhhhchHHHHHHHHhhceEEE-ecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCC
Q 007465 413 ELCLELLKKVEEFGKWRKALLDDLCEFVKPVV-FMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCN 490 (603)
Q Consensus 413 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~-~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~ 490 (603)
+...+++.+.|-|.+++....++||..|-... =..|.+|+..|+.-+.-+.|++|.|++..++|+++ .+ -|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e------~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKRE------ELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceE------Eeeccc
Confidence 34467888899999999999999998875444 47899999999999999999999999999988764 56 899
Q ss_pred eeechhhhhhhcccCcCCCCCCCCCCcceEE-EEeceEEEEEeCHHhHHHHHh
Q 007465 491 ICGEELVAWAQDACTRTDSSSSALPISTITI-QALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 491 ~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv-~Al~~~~l~~L~~~df~~ll~ 542 (603)
-||-..- ... +. ...-+ .-+.||+...+...|+-.++.
T Consensus 351 SFG~~PT---~dk-----qy------m~G~mRTkVDDCqFVciaqqDycrIln 389 (1283)
T KOG3542|consen 351 SFGAEPT---PDK-----QY------MIGEMRTKVDDCQFVCIAQQDYCRILN 389 (1283)
T ss_pred ccCCCCC---cch-----hh------hhhhhheecccceEEEeehhhHHHHHH
Confidence 9996533 111 10 00112 346889999999999999997
No 39
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=95.53 E-value=0.18 Score=46.06 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=75.4
Q ss_pred hchHHHHHHHHhh-ceEEEecCCcEEEeCCC-ccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcc
Q 007465 427 KWRKALLDDLCEF-VKPVVFMENSYIVPEGG-SIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDA 503 (603)
Q Consensus 427 ~ls~~~l~~L~~~-l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~ 503 (603)
+.|....++|+.. .+...+.+|+.-.-||. +.|.+-++++|++++... | +. ++.+ +.+|...... .+..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~-g-~f----LH~I~p~qFlDSPEW-~s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD-G-RF----LHYIYPYQFLDSPEW-ESLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC-C-Ee----eEeecccccccChhh-hcccc
Confidence 3577788888877 66677999999998885 468999999999999873 3 22 2344 6665554443 22222
Q ss_pred cCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhccc
Q 007465 504 CTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKH 545 (603)
Q Consensus 504 ~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~ 545 (603)
..+ ..-+.|+.|.++|..+..+|+.+..++...+
T Consensus 87 -----s~~---~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~ 120 (153)
T PF04831_consen 87 -----SED---DKFQVTITAEEDCRYLCWPREKLYLLLAKDP 120 (153)
T ss_pred -----CCC---CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCH
Confidence 111 1467799999999999999999999998443
No 40
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=95.00 E-value=0.12 Score=59.05 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=79.8
Q ss_pred HHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCC-CcccCCCceec-CCCeeechhhhhhhcccCcCCCCCC
Q 007465 435 DLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEG-ITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSS 512 (603)
Q Consensus 435 ~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~-~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~ 512 (603)
+++.+++...+..||+|++.|+..+.+|.+.+|.+.++..++ |++. .+... +|+-|-...-+.+..+ ..++
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~--llk~V~~G~~~tSllSiLd~l~-----~~ps 182 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEY--LLKTVPPGGSFTSLLSILDSLP-----GFPS 182 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCcee--eEeeccCCCchHhHHHHHHhcc-----CCCc
Confidence 345777888899999999999999999999999999987543 2331 23445 8876665532222222 2222
Q ss_pred CCCCcceEEEEeceEEEEEeCHHhHHHHHh-cccchhhhHHHHHH
Q 007465 513 ALPISTITIQALTKVEAFILMADDLKNVLL-IKHNRAAPFIQAAR 556 (603)
Q Consensus 513 ~~~~r~~tv~Al~~~~l~~L~~~df~~ll~-~~~~~~~~~i~~~~ 556 (603)
+.++..++|.++|.+..++...|..+.. .|..|.+ .+|...
T Consensus 183 --~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~ir-iiQvvm 224 (1158)
T KOG2968|consen 183 --LSRTIAAKAATDCTVARIPYTSFRESFHKNPESSIR-IIQVVM 224 (1158)
T ss_pred --ccceeeeeeecCceEEEeccchhhhhhccChHHHHH-HHHHHH
Confidence 2577889999999999999999999988 5544444 334443
No 41
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.0085 Score=64.73 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHH--------HHHHHHHHHHHHHHHHHH
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWEN--------IFAICITACGVWLLVILV 340 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~--------~~~i~~~i~G~~~fa~ii 340 (603)
-|+.|+||++.++||||+||+.|.+.... .+..+..++|...++...
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 46679999999999999999999987755 577788888888887776
No 42
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=94.34 E-value=0.012 Score=47.59 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=18.5
Q ss_pred ccceeecCCCchh-hHHHHHHHHHH
Q 007465 50 CVKKIFDTHGSYG-NWVFLVWCVIV 73 (603)
Q Consensus 50 ~~~~ii~P~s~~~-~~~~~~~~~i~ 73 (603)
...+||||.|+|+ .|++++.+++.
T Consensus 34 ~~~~IIHP~S~fR~~WD~~m~~~~~ 58 (77)
T PF08412_consen 34 SGPWIIHPFSKFRFYWDLIMLILLL 58 (77)
T ss_pred CCCeEEcCCccHHHHHHHHHHHHHH
Confidence 4478999999999 77777665553
No 43
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.16 E-value=0.4 Score=55.31 Aligned_cols=43 Identities=5% Similarity=0.084 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcc-ccCCCcc-cccchhHHHHHh
Q 007465 102 AASACRSVFDLFYIIDNVFRLHTG-ISKSSRK-RSWLLFLSDVLF 144 (603)
Q Consensus 102 ~~~~~~~~~D~~f~~Di~l~f~t~-~~~~~~V-d~k~~F~iDlls 144 (603)
++.+-|+++..+|++++.++---- .--|+.- =+.+|-.+|.+-
T Consensus 1157 FltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgfl 1201 (1956)
T KOG2302|consen 1157 FLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFL 1201 (1956)
T ss_pred EEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHH
Confidence 344556899999999999876432 2233322 111676677543
No 44
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.15 Score=53.21 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhccccccCCCCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTS--TNPWENIFAICITACGVWLLVILVGKIQT 345 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p--~~~~E~~~~i~~~i~G~~~fa~iig~i~~ 345 (603)
-...||-||+-|=||+|||--.+ .-+.-.+..++-+++|+++-|+++|.|-+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~a 165 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFA 165 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999998644 34555666666779999999999987655
No 45
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=92.49 E-value=0.18 Score=55.69 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=74.6
Q ss_pred HhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechh
Q 007465 418 LLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEEL 496 (603)
Q Consensus 418 ~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~ 496 (603)
.|.+...|+++-..-+..++...+.+.++.+.++++.|++++..|++++|.|-+.. .+. +-.+||-.
T Consensus 38 ~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----------qi~mp~~~fgkr- 105 (1283)
T KOG3542|consen 38 QLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----------QIYMPYGCFGKR- 105 (1283)
T ss_pred HHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----------ceecCccccccc-
Confidence 56778899999999999999999999999999999999999999999999998753 234 66677755
Q ss_pred hhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHH
Q 007465 497 VAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMAD 535 (603)
Q Consensus 497 l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~ 535 (603)
..+ .|+.+.--++++|+.+++..
T Consensus 106 ----~g~------------~r~~nclllq~semivid~~ 128 (1283)
T KOG3542|consen 106 ----TGQ------------NRTHNCLLLQESEMIVIDYP 128 (1283)
T ss_pred ----ccc------------ccccceeeecccceeeeecC
Confidence 122 37788899999999998543
No 46
>PLN03223 Polycystin cation channel protein; Provisional
Probab=82.98 E-value=15 Score=44.93 Aligned_cols=26 Identities=15% Similarity=-0.051 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 323 IFAICITACGVWLLVILVGKIQTYTK 348 (603)
Q Consensus 323 ~~~i~~~i~G~~~fa~iig~i~~il~ 348 (603)
.|..+++++..++.-++|+-|...++
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFs 1423 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFG 1423 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555544
No 47
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=82.48 E-value=0.37 Score=52.09 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=26.4
Q ss_pred HHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHH
Q 007465 297 YCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVW 334 (603)
Q Consensus 297 ~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~ 334 (603)
.|+|+.++|.+||||||..|....-.+..+++..++.+
T Consensus 220 ~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~ 257 (1087)
T KOG3193|consen 220 TSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALG 257 (1087)
T ss_pred eeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHh
Confidence 47999999999999999999654444444333333333
No 48
>COG4709 Predicted membrane protein [Function unknown]
Probab=76.61 E-value=12 Score=35.54 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=54.1
Q ss_pred HHHHHHHhhccCccCCHHHHHHHHHh-Hhhhh--hccCCCHHHHHhhc--hhhHHHHHHHHHHHHHhhcchhhhhchHHH
Q 007465 358 QKEKELEQWLPFRKLSQNLQQQIKYH-LHSWD--ETRNFNIENLVYNL--PEDLGRDIKSELCLELLKKVEEFGKWRKAL 432 (603)
Q Consensus 358 ~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~--~~~~~~e~~ll~~L--p~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~ 432 (603)
+-++++++|++ ++|++.+..+..| +-++. ...|.+|+++..+| |.++-.|+..+.-.+-.+.-|-+++.+...
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 34678888886 7999999887776 43333 34678899999998 888888888777666666666666655543
Q ss_pred H
Q 007465 433 L 433 (603)
Q Consensus 433 l 433 (603)
+
T Consensus 83 i 83 (195)
T COG4709 83 I 83 (195)
T ss_pred H
Confidence 3
No 49
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=75.65 E-value=1.5e+02 Score=35.43 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=28.9
Q ss_pred hhchhhHHHHHHHHHHHHHh----hcchhhhhchHHHHHHHHhhc
Q 007465 400 YNLPEDLGRDIKSELCLELL----KKVEEFGKWRKALLDDLCEFV 440 (603)
Q Consensus 400 ~~Lp~~Lr~~i~~~~~~~~L----~~v~lF~~ls~~~l~~L~~~l 440 (603)
+++|+.||.++..+.+..+- .+-.+++.+|+....+++..+
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l 371 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHL 371 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHH
Confidence 46899999999888765432 223456778888777777654
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=71.80 E-value=20 Score=34.04 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=42.4
Q ss_pred HHHHHHHhhccCccCCHHHHHHHHHh--Hhhhh-hccCCCHHHHHhhc--hhhHHHHHHHHHHH
Q 007465 358 QKEKELEQWLPFRKLSQNLQQQIKYH--LHSWD-ETRNFNIENLVYNL--PEDLGRDIKSELCL 416 (603)
Q Consensus 358 ~~~~~i~~~m~~~~lp~~L~~rvr~y--~y~~~-~~~~~~e~~ll~~L--p~~Lr~~i~~~~~~ 416 (603)
+-+++++++++ ++|++-++++.+| +|--. ...|.+|++++++| |.++-+++..+...
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~i 66 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYSI 66 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhhh
Confidence 34778888887 5999999998887 55433 24578899999998 77777777655443
No 51
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=65.99 E-value=10 Score=34.24 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007465 290 DFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSG 350 (603)
Q Consensus 290 ~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 350 (603)
........++++.+.+++. +-++..|.+...+++.+++.+++.++.+..-|++++.+..-
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445667789999988887 55678999999999999999999999999999999988754
No 52
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=64.43 E-value=11 Score=29.15 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=31.3
Q ss_pred EEecCCcEEEeCCCccC-eEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 443 VVFMENSYIVPEGGSID-KMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 443 ~~~~~ge~I~~~Gd~~~-~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
..++||+..-..-.... ++++|++|++.+.. ++. . ..+ +|+.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~-~-----~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DGE-R-----VELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TTE-E-----EEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-ccE-E-----eEccCCEEE
Confidence 46788887665555555 89999999999984 443 3 466 88865
No 53
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=58.76 E-value=1.4e+02 Score=34.79 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=55.4
Q ss_pred cccccCCCCCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-H-HHHHHHHHHHHhhccCccCCHHHHH
Q 007465 307 SSFGQGLQTSTNP------WENIFAICITACGVWLLVILVGKIQTYTKSGSI-L-EGMRQKEKELEQWLPFRKLSQNLQQ 378 (603)
Q Consensus 307 tTvGyGdi~p~~~------~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~-~-~~~~~~~~~i~~~m~~~~lp~~L~~ 378 (603)
.|+|+||...... .-.+|.+++.+....++=.+|+-|++....... + .+++.+... --.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~-~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAA-TILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHH-HHHHHHhcCCHHHHH
Confidence 5899999865422 345666666777777888899999999988877 4 777666433 345668999999998
Q ss_pred H-HHHh
Q 007465 379 Q-IKYH 383 (603)
Q Consensus 379 r-vr~y 383 (603)
| -..|
T Consensus 680 ~~~~~y 685 (782)
T KOG3676|consen 680 RFRLGY 685 (782)
T ss_pred HHhhcc
Confidence 8 4444
No 54
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=54.46 E-value=99 Score=28.61 Aligned_cols=57 Identities=12% Similarity=0.002 Sum_probs=33.4
Q ss_pred cccchHHHHHHHHHHHhhhccccccCCCCCCChhH-----HHHHHHHHHHHHHHHHHHHHHH
Q 007465 287 ETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWE-----NIFAICITACGVWLLVILVGKI 343 (603)
Q Consensus 287 ~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E-----~~~~i~~~i~G~~~fa~iig~i 343 (603)
.+.........++-.|+.++...--|+--+..... ...+.+..+.-.++.++++.|+
T Consensus 134 ~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nl 195 (200)
T PF00520_consen 134 ENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNL 195 (200)
T ss_dssp ---SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHH
Confidence 44556667777788888888777777665555554 3455555555555555554443
No 55
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=54.08 E-value=71 Score=28.48 Aligned_cols=48 Identities=4% Similarity=-0.065 Sum_probs=30.4
Q ss_pred eEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 441 KPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 441 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
....++||..+-.--....++++|++|++++...+++++ ..+ +||.+-
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~-----~~L~aGD~i~ 86 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV-----HPIRPGTMYA 86 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE-----EEeCCCeEEE
Confidence 345678887553221122479999999999983222343 567 999864
No 56
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=52.00 E-value=62 Score=34.64 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhhcc
Q 007465 290 DFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGMRQKEKELEQWLP 368 (603)
Q Consensus 290 ~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~-~~~~~~~~~~i~~~m~ 368 (603)
...--|+.+|-+++..+.+++-++....-..-..+++++.+++.+.|-|.|.+++..++--+. .+-.++-.+.+.+...
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~~~~ 175 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEEDARKAIDRLYP 175 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhc
Confidence 345578899999999998888777633223337788888888889999999999988877666 5555555555555444
No 57
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.99 E-value=1.6e+02 Score=37.55 Aligned_cols=74 Identities=9% Similarity=0.100 Sum_probs=42.7
Q ss_pred hhhccccccCCCCCCChhHHHHHHHHHHHHHHHHH-----HHHHHHH----HHHH-hhcH-HHHHHHHHHHHHhhccCcc
Q 007465 303 VQSLSSFGQGLQTSTNPWENIFAICITACGVWLLV-----ILVGKIQ----TYTK-SGSI-LEGMRQKEKELEQWLPFRK 371 (603)
Q Consensus 303 ~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa-----~iig~i~----~il~-~~~~-~~~~~~~~~~i~~~m~~~~ 371 (603)
..--+.++-|++.+.+....+|-++..++|.++.- .+|.+-+ .... .++. +.++...+..+...=.++.
T Consensus 1059 ~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~~~~~~~eq~~~~~~~~~l~sk~~~r~ 1138 (1592)
T KOG2301|consen 1059 AIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAGGTFMTEEQKKRLNAAKKLGSKPPQRP 1138 (1592)
T ss_pred HhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhhhhhhhHHHHHHHHHHHHhcCCCCCCC
Confidence 33446778888888888888888888777777652 2222221 1111 3344 4444444555555555666
Q ss_pred CCHHH
Q 007465 372 LSQNL 376 (603)
Q Consensus 372 lp~~L 376 (603)
+|+.+
T Consensus 1139 ipr~~ 1143 (1592)
T KOG2301|consen 1139 IPRPR 1143 (1592)
T ss_pred CCCCc
Confidence 66654
No 58
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=48.07 E-value=26 Score=27.99 Aligned_cols=39 Identities=13% Similarity=0.344 Sum_probs=27.2
Q ss_pred cCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 446 MENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 446 ~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
.||..=..-.. ++..+|++|.+.+...+| +. ..+ +||.|
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~~~G-~~-----~~~~aGD~~ 54 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITDEDG-ET-----VTFKAGDAF 54 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEETTT-EE-----EEEETTEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEECCC-CE-----EEEcCCcEE
Confidence 45554433322 888999999999987655 33 567 99876
No 59
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=47.62 E-value=94 Score=23.66 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcH----HHHHHHHHHHHHhhccC
Q 007465 327 CITACGVWLLVILVGKIQTYTKSGSI----LEGMRQKEKELEQWLPF 369 (603)
Q Consensus 327 ~~~i~G~~~fa~iig~i~~il~~~~~----~~~~~~~~~~i~~~m~~ 369 (603)
.+.+++.+.|+. -|-.++++.+. ...+++|+|.+-+.+.+
T Consensus 14 ~l~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 14 ILIVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 333444444443 45555555443 33699999999887643
No 60
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=44.43 E-value=59 Score=30.33 Aligned_cols=59 Identities=7% Similarity=0.016 Sum_probs=38.0
Q ss_pred cCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHh
Q 007465 458 IDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADD 536 (603)
Q Consensus 458 ~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~d 536 (603)
.+++|++++|.+.+...++++.. ...+ +|++|= -| ++ -..+-++.++|..+.+.+..
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl--------vP------~g-----vpHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFL--------LP------PH-----VPHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEE--------eC------CC-----CCcccccCCCcEEEEEEeCC
Confidence 68999999999999876654321 1566 999873 22 11 11134556778888877764
Q ss_pred HH
Q 007465 537 LK 538 (603)
Q Consensus 537 f~ 538 (603)
-.
T Consensus 106 ~~ 107 (159)
T TIGR03037 106 PQ 107 (159)
T ss_pred CC
Confidence 33
No 61
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.42 E-value=1.3e+02 Score=35.11 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=34.4
Q ss_pred hhchhhHHHHHHHHHHHHHhh-----cchhhhhchHHHHHHHHhhc
Q 007465 400 YNLPEDLGRDIKSELCLELLK-----KVEEFGKWRKALLDDLCEFV 440 (603)
Q Consensus 400 ~~Lp~~Lr~~i~~~~~~~~L~-----~v~lF~~ls~~~l~~L~~~l 440 (603)
++||++||+.+..+...++.. .-.+++++|++..++|+.++
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 569999999999999888765 33678999999999988776
No 62
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=40.57 E-value=49 Score=28.65 Aligned_cols=44 Identities=11% Similarity=0.296 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHHHhHhhhhh-----------ccCCCHHHHHhhchhhHHHHHHHH
Q 007465 370 RKLSQNLQQQIKYHLHSWDE-----------TRNFNIENLVYNLPEDLGRDIKSE 413 (603)
Q Consensus 370 ~~lp~~L~~rvr~y~y~~~~-----------~~~~~e~~ll~~Lp~~Lr~~i~~~ 413 (603)
.-||+++|..|..++..|.. ....|...++..||+.||.+|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 35799999999888333321 223456789999999999998654
No 63
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.69 E-value=1.7e+02 Score=37.49 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccccCCCccccc-----chhHHHHHhhcChhHH
Q 007465 99 LWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSW-----LLFLSDVLFILPIPQV 151 (603)
Q Consensus 99 ~~~~~~~~~~~~D~~f~~Di~l~f~t~~~~~~~Vd~k-----~~F~iDlls~lP~~~l 151 (603)
....+.+.+.++-.+|.+++.+..- ..+++ +|..+|.+-+. +.++
T Consensus 471 ~~~~l~~~~~vF~~lF~~Em~~ki~-------al~~~~yF~~~~n~fD~~iv~-l~~~ 520 (1592)
T KOG2301|consen 471 RNYLLYLGNVVFTGLFTVEMILKIY-------ALGPRNYFRRGWNIFDLIIVL-LSLL 520 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HcCcHHHHhhhcchheEEEEe-hhhH
Confidence 3455667777888888888887763 11443 78889988777 4443
No 64
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=33.67 E-value=90 Score=27.62 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=37.0
Q ss_pred ceEEEecCCcEEEeCCCc-cCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeech
Q 007465 440 VKPVVFMENSYIVPEGGS-IDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEE 495 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~ 495 (603)
+....+.||..+-.--.+ .+...+|++|.+++... + +. ..+ +||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g-~~-----~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-G-EK-----KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-C-Cc-----eEecCCCEEEEC
Confidence 445668888888776666 67899999999999885 3 33 567 99988644
No 65
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.42 E-value=1.1e+02 Score=27.07 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=32.7
Q ss_pred hceEEEecCCcEE-EeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 439 FVKPVVFMENSYI-VPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 439 ~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
.++...++||+-+ .+--...++.|+|++|...+... ++. ..+ +|+.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~~-----~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GEE-----VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CEE-----EEecCCCEE
Confidence 4566677888875 44444478999999999999874 233 345 77754
No 66
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=31.96 E-value=51 Score=31.99 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=29.5
Q ss_pred hhchHHHHHHHHhhceEEE--ecCCcEEEeCCCccC
Q 007465 426 GKWRKALLDDLCEFVKPVV--FMENSYIVPEGGSID 459 (603)
Q Consensus 426 ~~ls~~~l~~L~~~l~~~~--~~~ge~I~~~Gd~~~ 459 (603)
...++...++......+.. +.+|+.|+++|+..+
T Consensus 172 ~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 172 EEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 4567888888999999999 999999999999765
No 67
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=29.68 E-value=2.3e+02 Score=29.21 Aligned_cols=74 Identities=9% Similarity=0.023 Sum_probs=49.6
Q ss_pred hhccccccCCCCCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhhccCccCCHHHHHHHH
Q 007465 304 QSLSSFGQGLQTSTNPWENIFAICIT-ACGVWLLVILVGKIQTYTKSGSI-LEGMRQKEKELEQWLPFRKLSQNLQQQIK 381 (603)
Q Consensus 304 ~tltTvGyGdi~p~~~~E~~~~i~~~-i~G~~~fa~iig~i~~il~~~~~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr 381 (603)
..+++.|-+-..| +++.+.- +.+.+..+|++-.+..+.-+... .++++-.-|++++-.++.+=+++++.+=|
T Consensus 166 ~~lp~CG~~C~~~------Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskRR 239 (349)
T COG4792 166 LYLPGCGLYCALP------VVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRR 239 (349)
T ss_pred hhccccccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHHHH
Confidence 3445555444433 2333333 33344677888788777666666 77777777899999999999999988887
Q ss_pred Hh
Q 007465 382 YH 383 (603)
Q Consensus 382 ~y 383 (603)
+.
T Consensus 240 q~ 241 (349)
T COG4792 240 QL 241 (349)
T ss_pred HH
Confidence 77
No 68
>PHA03029 hypothetical protein; Provisional
Probab=28.15 E-value=2.7e+02 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHH
Q 007465 318 NPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGMRQK 359 (603)
Q Consensus 318 ~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~-~~~~~~~ 359 (603)
++.|.+|-++..++=.++.-.+||-+-..+-+.++ +....+.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raai~qn 44 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAAIDQN 44 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888777777777778888777777776 5554433
No 69
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=26.06 E-value=64 Score=24.57 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=16.0
Q ss_pred HHHHhhchhhHHHHHHHHH
Q 007465 396 ENLVYNLPEDLGRDIKSEL 414 (603)
Q Consensus 396 ~~ll~~Lp~~Lr~~i~~~~ 414 (603)
-+++++||++|++++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 4688999999999987665
No 70
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=25.96 E-value=97 Score=29.43 Aligned_cols=61 Identities=5% Similarity=0.001 Sum_probs=38.7
Q ss_pred CccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCH
Q 007465 456 GSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMA 534 (603)
Q Consensus 456 d~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~ 534 (603)
+..+++|++++|.+.+...++++.. ...+ +|+.|= .| .+. ..+-++.++|..+.+.+
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl--------lP------~gv-----pHsP~r~~~tv~LviE~ 109 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL--------LP------PHV-----PHSPQREAGSIGLVIER 109 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE--------eC------CCC-----CcCCccCCCeEEEEEEe
Confidence 4568999999999999886655321 1567 999872 22 111 11334467788888866
Q ss_pred HhHH
Q 007465 535 DDLK 538 (603)
Q Consensus 535 ~df~ 538 (603)
..-.
T Consensus 110 ~r~~ 113 (177)
T PRK13264 110 KRPE 113 (177)
T ss_pred CCCC
Confidence 5443
No 71
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.79 E-value=5.9e+02 Score=30.10 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=37.2
Q ss_pred HHHHHHHhhhccccccCCCCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH--HHHHHHHHHHHHhhcc
Q 007465 296 YYCFRWGVQSLSSFGQGLQTS-----TNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI--LEGMRQKEKELEQWLP 368 (603)
Q Consensus 296 ~~slYwa~~tltTvGyGdi~p-----~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~--~~~~~~~~~~i~~~m~ 368 (603)
..+++||+-+++-++--++.- .+..+.+|.+-.++.=.++--.+|+-|.+-.|.... ..|+ |-...+-||+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEW--KFARAKLw~s 632 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEW--KFARAKLWMS 632 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHH--HHHHHHHHHH
Confidence 458999998777655444432 133444444444444444445555555555555444 4455 3334444443
No 72
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=23.93 E-value=1.7e+02 Score=25.28 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHh-Hhhhh-h--------ccCC----CHHHHHhhchhhHHHHHHHHHHHH
Q 007465 371 KLSQNLQQQIKYH-LHSWD-E--------TRNF----NIENLVYNLPEDLGRDIKSELCLE 417 (603)
Q Consensus 371 ~lp~~L~~rvr~y-~y~~~-~--------~~~~----~e~~ll~~Lp~~Lr~~i~~~~~~~ 417 (603)
-||+++|..|..- ...-. . ..+- -..++|..||+++|.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 4899999998544 22110 0 0000 135899999999999998776554
No 73
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.63 E-value=87 Score=21.08 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=17.9
Q ss_pred HHHHHHhhccCccCC-----HHHHHHHHHh
Q 007465 359 KEKELEQWLPFRKLS-----QNLQQQIKYH 383 (603)
Q Consensus 359 ~~~~i~~~m~~~~lp-----~~L~~rvr~y 383 (603)
+..+++++++.+++| .+|.+|+.+|
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEH 34 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHh
Confidence 456778888888887 5678887765
No 74
>PHA01757 hypothetical protein
Probab=22.53 E-value=4.1e+02 Score=21.67 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 007465 318 NPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKEL 363 (603)
Q Consensus 318 ~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~i 363 (603)
+..|..+--|....|.+.-++++|.+..+.......+.|..-.+.+
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlynek~~nenf~~AvD~m 49 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNEKQRNENFAKAIDQM 49 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHHHHH
Confidence 4566667777788888888999999888765544455565555544
No 75
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=21.88 E-value=3.2e+02 Score=19.76 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHH
Q 007465 324 FAICITACGVWLLVILVGKIQTYTKSGSI-LEGMRQKEKE 362 (603)
Q Consensus 324 ~~i~~~i~G~~~fa~iig~i~~il~~~~~-~~~~~~~~~~ 362 (603)
++.+..+..++....+.+.+.++-.+... ..++|..-++
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555 5555544443
No 76
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=20.23 E-value=1.1e+02 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.386 Sum_probs=27.3
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceE
Q 007465 396 ENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKP 442 (603)
Q Consensus 396 ~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~ 442 (603)
.++|..||+.+|.++...+ --+...+++.++.+-..++.
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 5788888888887776555 34677788888877766543
Done!