Query 007465
Match_columns 603
No_of_seqs 392 out of 2925
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 02:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 5.7E-33 1.9E-37 293.3 12.5 187 292-556 159-346 (355)
2 3bpz_A Potassium/sodium hyperp 100.0 1E-29 3.5E-34 246.4 22.5 191 348-559 2-195 (202)
3 2ptm_A Hyperpolarization-activ 100.0 1.3E-29 4.3E-34 244.9 20.6 187 349-555 2-191 (198)
4 3ukn_A Novel protein similar t 100.0 1.9E-30 6.4E-35 253.5 13.4 197 344-559 1-200 (212)
5 1orq_C Potassium channel; volt 99.8 2.7E-20 9.2E-25 183.3 15.2 181 97-350 35-221 (223)
6 4f8a_A Potassium voltage-gated 99.8 8.2E-18 2.8E-22 155.3 14.7 141 395-553 5-146 (160)
7 3dn7_A Cyclic nucleotide bindi 99.8 3.6E-18 1.2E-22 163.4 12.2 169 416-601 6-176 (194)
8 2r9r_B Paddle chimera voltage 99.7 8.3E-18 2.8E-22 184.7 11.2 184 100-352 238-433 (514)
9 4ev0_A Transcription regulator 99.7 1E-16 3.5E-21 155.7 8.9 165 419-601 1-171 (216)
10 3ocp_A PRKG1 protein; serine/t 99.6 7.5E-16 2.6E-20 139.0 12.2 125 401-545 7-132 (139)
11 3fx3_A Cyclic nucleotide-bindi 99.6 3E-16 1E-20 154.9 9.9 171 413-601 7-186 (237)
12 1zyb_A Transcription regulator 99.6 1.1E-15 3.7E-20 150.7 11.5 168 416-601 17-194 (232)
13 3gyd_A CNMP-BD protein, cyclic 99.6 2.1E-15 7.2E-20 143.8 12.0 142 395-552 13-160 (187)
14 3d0s_A Transcriptional regulat 99.6 3.4E-16 1.2E-20 153.3 6.1 168 416-601 5-185 (227)
15 3dv8_A Transcriptional regulat 99.6 6.4E-16 2.2E-20 150.4 7.7 167 417-601 3-177 (220)
16 2a9h_A Voltage-gated potassium 99.6 2.1E-15 7.3E-20 138.9 10.5 63 294-356 84-147 (155)
17 3mdp_A Cyclic nucleotide-bindi 99.6 5.5E-15 1.9E-19 133.2 12.7 127 417-557 6-135 (142)
18 2pqq_A Putative transcriptiona 99.6 6.6E-15 2.3E-19 133.7 12.8 143 416-576 4-148 (149)
19 3idb_B CAMP-dependent protein 99.6 4.9E-15 1.7E-19 137.3 11.9 119 408-542 29-148 (161)
20 1wgp_A Probable cyclic nucleot 99.6 3.8E-15 1.3E-19 133.8 10.8 122 417-543 6-128 (137)
21 3dkw_A DNR protein; CRP-FNR, H 99.6 5.3E-16 1.8E-20 151.8 5.4 169 416-601 8-186 (227)
22 2gau_A Transcriptional regulat 99.6 1.9E-15 6.5E-20 148.5 9.3 163 420-601 13-188 (232)
23 3e97_A Transcriptional regulat 99.6 1.5E-15 5.2E-20 149.2 8.4 166 416-601 5-183 (231)
24 3iwz_A CAP-like, catabolite ac 99.6 2.5E-15 8.5E-20 147.3 9.1 169 416-601 10-195 (230)
25 1vp6_A CNBD, cyclic-nucleotide 99.6 3E-14 1E-18 127.9 13.8 121 415-557 9-130 (138)
26 2z69_A DNR protein; beta barre 99.6 6.9E-14 2.4E-18 127.8 15.9 128 416-558 11-140 (154)
27 2fmy_A COOA, carbon monoxide o 99.5 2.2E-15 7.4E-20 147.0 5.1 160 417-601 4-175 (220)
28 3pna_A CAMP-dependent protein 99.5 4.7E-14 1.6E-18 129.7 13.7 110 413-542 34-144 (154)
29 2d93_A RAP guanine nucleotide 99.5 4.9E-15 1.7E-19 132.9 6.1 120 403-542 2-124 (134)
30 2ih3_C Voltage-gated potassium 99.5 2.4E-14 8.2E-19 126.8 9.8 59 294-352 61-119 (122)
31 3vou_A ION transport 2 domain 99.5 7.1E-14 2.4E-18 128.2 13.3 85 295-379 53-148 (148)
32 1ft9_A Carbon monoxide oxidati 99.5 4.7E-15 1.6E-19 144.9 5.1 159 418-601 1-171 (222)
33 3shr_A CGMP-dependent protein 99.5 4.2E-14 1.5E-18 144.5 12.4 126 397-542 19-145 (299)
34 4h33_A LMO2059 protein; bilaye 99.5 8.4E-15 2.9E-19 132.4 6.0 89 295-383 44-133 (137)
35 1o5l_A Transcriptional regulat 99.5 1.6E-14 5.4E-19 140.4 7.5 164 422-602 4-173 (213)
36 3ryp_A Catabolite gene activat 99.5 3.3E-14 1.1E-18 137.2 8.8 162 423-601 2-175 (210)
37 2oz6_A Virulence factor regula 99.5 3.2E-14 1.1E-18 136.9 8.0 160 428-601 1-172 (207)
38 3shr_A CGMP-dependent protein 99.5 6.3E-13 2.2E-17 135.8 15.9 131 413-559 153-286 (299)
39 4ava_A Lysine acetyltransferas 99.5 4.7E-13 1.6E-17 139.0 15.2 126 416-559 12-139 (333)
40 3of1_A CAMP-dependent protein 99.4 7.1E-13 2.4E-17 130.8 14.1 111 415-545 5-116 (246)
41 3kcc_A Catabolite gene activat 99.4 1.5E-13 5.2E-18 137.8 8.9 159 426-601 55-225 (260)
42 3eff_K Voltage-gated potassium 99.4 2.5E-13 8.4E-18 123.3 9.3 89 294-383 40-130 (139)
43 3of1_A CAMP-dependent protein 99.4 7.1E-13 2.4E-17 130.8 13.5 110 414-542 122-232 (246)
44 2qcs_B CAMP-dependent protein 99.4 2.1E-12 7.1E-17 131.2 14.7 115 411-545 33-148 (291)
45 3tnp_B CAMP-dependent protein 99.4 1.4E-12 4.7E-17 140.1 13.7 118 409-542 137-255 (416)
46 3e6c_C CPRK, cyclic nucleotide 99.4 3E-13 1E-17 134.6 6.3 161 420-601 12-185 (250)
47 2qcs_B CAMP-dependent protein 99.4 5.1E-12 1.7E-16 128.3 15.4 125 413-553 153-280 (291)
48 3la7_A Global nitrogen regulat 99.3 1.8E-12 6.3E-17 128.4 9.4 156 430-601 30-201 (243)
49 1o7f_A CAMP-dependent RAP1 gua 99.3 5.4E-12 1.9E-16 137.2 13.4 126 402-542 27-154 (469)
50 4din_B CAMP-dependent protein 99.3 3E-12 1E-16 135.8 10.6 126 413-554 244-372 (381)
51 4din_B CAMP-dependent protein 99.3 2.9E-12 9.8E-17 136.0 9.9 115 411-545 124-239 (381)
52 2bgc_A PRFA; bacterial infecti 99.3 5.3E-12 1.8E-16 124.6 9.1 159 426-601 2-177 (238)
53 1o7f_A CAMP-dependent RAP1 gua 99.3 1.5E-11 5E-16 133.8 13.4 120 413-551 333-455 (469)
54 3tnp_B CAMP-dependent protein 99.3 1.1E-11 3.8E-16 133.1 12.1 113 415-543 265-385 (416)
55 4f7z_A RAP guanine nucleotide 99.2 3.2E-11 1.1E-15 143.4 13.1 129 398-542 24-154 (999)
56 3cf6_E RAP guanine nucleotide 99.2 6E-11 2.1E-15 134.8 13.2 127 396-542 12-141 (694)
57 2q67_A Potassium channel prote 99.2 2.6E-11 8.9E-16 105.8 7.3 62 295-356 50-112 (114)
58 2k1e_A Water soluble analogue 99.2 4.9E-12 1.7E-16 108.5 1.9 58 295-352 41-98 (103)
59 4f7z_A RAP guanine nucleotide 99.1 1.4E-10 4.7E-15 137.9 13.4 111 413-542 333-446 (999)
60 3ldc_A Calcium-gated potassium 99.1 7.8E-11 2.7E-15 96.5 7.6 53 295-347 29-81 (82)
61 3b02_A Transcriptional regulat 99.1 2.1E-11 7.1E-16 116.4 4.8 135 443-602 2-148 (195)
62 3ouf_A Potassium channel prote 99.1 1.1E-10 3.8E-15 98.7 7.2 56 295-350 33-88 (97)
63 3pjs_K KCSA, voltage-gated pot 99.1 7.2E-12 2.5E-16 117.0 -1.1 58 295-352 68-125 (166)
64 2zcw_A TTHA1359, transcription 99.0 5E-11 1.7E-15 114.3 1.8 139 437-601 2-154 (202)
65 3rvy_A ION transport protein; 98.9 2E-09 6.9E-14 109.4 7.4 60 293-352 179-244 (285)
66 3um7_A Potassium channel subfa 98.9 6E-09 2.1E-13 105.8 9.9 57 294-350 115-171 (309)
67 1xl4_A Inward rectifier potass 98.8 4E-09 1.4E-13 107.5 8.4 54 295-348 83-136 (301)
68 2qks_A KIR3.1-prokaryotic KIR 98.7 1.6E-08 5.3E-13 103.9 7.7 58 294-351 78-135 (321)
69 1p7b_A Integral membrane chann 98.7 1.7E-08 5.6E-13 104.1 6.7 56 295-350 97-152 (333)
70 3ukm_A Potassium channel subfa 98.6 8.5E-08 2.9E-12 95.9 7.8 55 294-348 93-147 (280)
71 3um7_A Potassium channel subfa 98.5 3.7E-08 1.3E-12 100.0 4.4 58 295-352 225-288 (309)
72 4gx0_A TRKA domain protein; me 98.5 1.6E-07 5.4E-12 104.6 9.4 53 295-347 52-105 (565)
73 3sya_A G protein-activated inw 98.4 4.3E-07 1.5E-11 93.3 9.3 56 295-350 92-149 (340)
74 3ukm_A Potassium channel subfa 98.4 1.2E-07 4E-12 95.0 4.8 56 295-350 202-264 (280)
75 3spc_A Inward-rectifier K+ cha 98.4 7.8E-07 2.7E-11 91.5 9.1 56 294-349 94-151 (343)
76 1lnq_A MTHK channels, potassiu 98.3 3.6E-08 1.2E-12 102.4 -2.3 56 297-352 48-103 (336)
77 4dxw_A Navrh, ION transport pr 97.4 0.00027 9.3E-09 68.8 8.1 48 98-148 39-88 (229)
78 1ors_C Potassium channel; volt 96.4 0.0041 1.4E-07 55.0 5.8 52 98-152 34-85 (132)
79 2kyh_A KVAP, voltage-gated pot 95.8 0.0066 2.2E-07 54.7 4.0 48 99-152 50-100 (147)
80 3kg2_A Glutamate receptor 2; I 66.8 7.1 0.00024 44.4 6.6 55 294-349 563-617 (823)
81 3rns_A Cupin 2 conserved barre 63.7 30 0.001 32.7 9.4 67 440-532 39-106 (227)
82 2ozj_A Cupin 2, conserved barr 59.0 41 0.0014 27.4 8.4 42 444-492 44-86 (114)
83 3fjs_A Uncharacterized protein 55.1 57 0.002 26.8 8.7 46 440-492 38-84 (114)
84 1yhf_A Hypothetical protein SP 53.4 78 0.0027 25.5 9.3 46 440-492 42-88 (115)
85 2pfw_A Cupin 2, conserved barr 49.7 86 0.003 25.3 9.0 46 440-492 36-82 (116)
86 3lwc_A Uncharacterized protein 47.8 41 0.0014 28.2 6.6 44 442-493 44-88 (119)
87 1o5u_A Novel thermotoga mariti 44.6 71 0.0024 25.9 7.4 46 440-493 33-79 (101)
88 1v70_A Probable antibiotics sy 37.1 65 0.0022 25.1 6.0 45 441-492 31-77 (105)
89 3h8u_A Uncharacterized conserv 36.8 44 0.0015 27.6 5.1 47 440-492 41-89 (125)
90 4e2g_A Cupin 2 conserved barre 36.1 59 0.002 26.9 5.8 46 440-492 43-89 (126)
91 2gu9_A Tetracenomycin polyketi 35.6 58 0.002 26.0 5.6 46 440-492 23-72 (113)
92 3rns_A Cupin 2 conserved barre 31.6 1.5E+02 0.0051 27.6 8.5 46 440-492 155-201 (227)
93 1yfu_A 3-hydroxyanthranilate-3 30.6 45 0.0015 30.2 4.1 34 457-493 54-88 (174)
94 3bcw_A Uncharacterized protein 30.5 41 0.0014 28.5 3.8 43 444-493 55-98 (123)
95 2fqp_A Hypothetical protein BP 30.1 24 0.00083 28.0 2.2 48 441-493 21-70 (97)
96 1dgw_A Canavalin; duplicated s 26.6 51 0.0018 29.7 4.0 50 440-493 43-94 (178)
97 1zvf_A 3-hydroxyanthranilate 3 26.6 41 0.0014 30.5 3.1 86 431-538 12-117 (176)
98 3es4_A Uncharacterized protein 26.5 52 0.0018 27.7 3.6 42 445-493 49-91 (116)
99 3ibm_A Cupin 2, conserved barr 25.8 86 0.0029 27.8 5.3 45 441-492 59-104 (167)
100 3d82_A Cupin 2, conserved barr 24.5 1.6E+02 0.0055 22.7 6.3 49 459-533 51-100 (102)
101 3kgz_A Cupin 2 conserved barre 24.0 79 0.0027 27.8 4.6 44 442-492 48-92 (156)
102 3es1_A Cupin 2, conserved barr 23.7 58 0.002 29.5 3.7 47 440-492 81-128 (172)
103 4i4a_A Similar to unknown prot 23.6 1.1E+02 0.0038 25.1 5.4 45 441-492 37-82 (128)
104 1o4t_A Putative oxalate decarb 23.0 1.1E+02 0.0037 25.8 5.2 44 442-492 61-106 (133)
105 3jzv_A Uncharacterized protein 22.6 75 0.0026 28.4 4.2 44 442-492 57-101 (166)
106 2vpv_A Protein MIF2, MIF2P; nu 22.4 66 0.0023 28.9 3.8 31 456-493 108-139 (166)
107 2b8m_A Hypothetical protein MJ 22.4 95 0.0032 25.2 4.6 43 443-492 32-76 (117)
108 4b29_A Dimethylsulfoniopropion 22.2 1.2E+02 0.0041 28.5 5.5 31 456-492 150-181 (217)
109 1vj2_A Novel manganese-contain 22.2 99 0.0034 25.6 4.7 44 442-492 52-96 (126)
110 1fi2_A Oxalate oxidase, germin 22.1 1.6E+02 0.0056 26.8 6.6 51 440-493 74-130 (201)
111 1y9q_A Transcriptional regulat 21.4 1.4E+02 0.0049 26.6 6.0 43 443-492 109-154 (192)
112 3i7d_A Sugar phosphate isomera 20.0 88 0.003 27.6 4.1 46 440-492 45-93 (163)
113 2pyt_A Ethanolamine utilizatio 20.0 1E+02 0.0035 26.3 4.4 43 442-493 61-104 (133)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.98 E-value=5.7e-33 Score=293.25 Aligned_cols=187 Identities=19% Similarity=0.209 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccCcc
Q 007465 292 KRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSILEGMRQKEKELEQWLPFRK 371 (603)
Q Consensus 292 ~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~i~~~m~~~~ 371 (603)
+..|..|+||+++||||+||||++|.|..|+++++++|++|.+++|+.+|.+++.+++.. ++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~-----~~------------- 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV-----RR------------- 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH-------------
Confidence 445888999999999999999999999999999999999999999999999987654211 10
Q ss_pred CCHHHHHHHHHhHhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEE
Q 007465 372 LSQNLQQQIKYHLHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYI 451 (603)
Q Consensus 372 lp~~L~~rvr~y~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I 451 (603)
+++. .+.+.++++|+|++++++.+++++..++++.|+|||.|
T Consensus 221 ---------~~~~-----------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I 262 (355)
T 3beh_A 221 ---------GDFV-----------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVI 262 (355)
T ss_dssp ---------HHHH-----------------------------HHHC----------------------------------
T ss_pred ---------Hhhc-----------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEE
Confidence 0110 02356888999999999999999999999999999999
Q ss_pred EeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEE
Q 007465 452 VPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAF 530 (603)
Q Consensus 452 ~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~ 530 (603)
+++||.++++|||.+|.++++..+ + ..+ +|++|||.+++ .+ . +++++++|.++|+++
T Consensus 263 ~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~-----~------~~~~~~~A~~~~~l~ 320 (355)
T 3beh_A 263 CRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SG-----E------PRSATVSAATTVSLL 320 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CC-----C------CcceEEEECccEEEE
Confidence 999999999999999999999754 2 467 99999999873 33 1 477899999999999
Q ss_pred EeCHHhHHHHHhcccchhhhHHHHHH
Q 007465 531 ILMADDLKNVLLIKHNRAAPFIQAAR 556 (603)
Q Consensus 531 ~L~~~df~~ll~~~~~~~~~~i~~~~ 556 (603)
.+++++|.++++..+.+.+.+.+.+.
T Consensus 321 ~i~~~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 321 SLHSADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp --------------------------
T ss_pred EEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999865555555554443
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=1e-29 Score=246.45 Aligned_cols=191 Identities=21% Similarity=0.255 Sum_probs=169.9
Q ss_pred HhhcH-HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhh
Q 007465 348 KSGSI-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEF 425 (603)
Q Consensus 348 ~~~~~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF 425 (603)
++++. +.+|+++|+.+++||+.++||++|+.||++| +|.|+ +++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 57888 9999999999999999999999999999999 99997 578899999999999999999999999999999999
Q ss_pred hhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhccc
Q 007465 426 GKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDAC 504 (603)
Q Consensus 426 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~ 504 (603)
+++++++++.++..++++.|+||++|+++||.++.+|||.+|.|+++..+| +. .++ +|++|||.+++ .+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g-~~-----~~l~~G~~fGe~~~~---~~- 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-KE-----MKLSDGSYFGEICLL---TR- 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTS-CC-----EEEETTCEECHHHHH---HC-
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCC-eE-----EEEcCCCEeccHHHh---cC-
Confidence 999999999999999999999999999999999999999999999986444 43 467 99999999883 33
Q ss_pred CcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHH
Q 007465 505 TRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFIT 559 (603)
Q Consensus 505 ~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~ 559 (603)
. +++++++|.++|+++.|++++|.++++..+.+...+.+.+..+.
T Consensus 151 ----~------~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl 195 (202)
T 3bpz_A 151 ----G------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRL 195 (202)
T ss_dssp ----S------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred ----C------CcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 1 47789999999999999999999999966667766666655433
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.3e-29 Score=244.88 Aligned_cols=187 Identities=20% Similarity=0.286 Sum_probs=167.5
Q ss_pred hhcH-HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhcchhhh
Q 007465 349 SGSI-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKKVEEFG 426 (603)
Q Consensus 349 ~~~~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~ 426 (603)
+++. +.+|+++|+.+++||+.+++|.+|+.||++| +|.|+ +++.+++++++.||++||.++..+.+.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 6788 9999999999999999999999999999999 99997 5788999999999999999999999999999999999
Q ss_pred hchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccC
Q 007465 427 KWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACT 505 (603)
Q Consensus 427 ~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~ 505 (603)
++++++++.++..++++.|+||++|+++||.++.+|||.+|.|+++..+|. . +..+ +|++|||.+++ .+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~-~----~~~l~~G~~fGe~~~~---~~-- 150 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV-I----ATSLSDGSYFGEICLL---TR-- 150 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSC-E----EEEECTTCEESCHHHH---HS--
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCe-E----EEEecCCCEechHHHc---CC--
Confidence 999999999999999999999999999999999999999999999985543 2 3677 99999999883 33
Q ss_pred cCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHH
Q 007465 506 RTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAA 555 (603)
Q Consensus 506 ~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~ 555 (603)
. +++++++|.++|+++.|++++|.++++..+.+...+.+.+
T Consensus 151 ---~------~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (198)
T 2ptm_A 151 ---E------RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIA 191 (198)
T ss_dssp ---S------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ---C------ccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 1 4788999999999999999999999985556655555443
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.9e-30 Score=253.47 Aligned_cols=197 Identities=17% Similarity=0.309 Sum_probs=167.0
Q ss_pred HHHHHhhcH-HHHHHHHHHHHHhhccCccCCHHHHHHHHHh-HhhhhhccCCCHHHHHhhchhhHHHHHHHHHHHHHhhc
Q 007465 344 QTYTKSGSI-LEGMRQKEKELEQWLPFRKLSQNLQQQIKYH-LHSWDETRNFNIENLVYNLPEDLGRDIKSELCLELLKK 421 (603)
Q Consensus 344 ~~il~~~~~-~~~~~~~~~~i~~~m~~~~lp~~L~~rvr~y-~y~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~ 421 (603)
|+++++++. +.+|+++|+.+++||+++++|++||.||++| +|.|+++++.|++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578999999 9999999999999999999999999999999 999999999999999999999999999999998777 8
Q ss_pred chhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhh
Q 007465 422 VEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWA 500 (603)
Q Consensus 422 v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~ 500 (603)
+|+|+++++++++.++..++++.|+|||+|+++||.++.+|||.+|.|+++. +| .. +..+ +|++|||.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~-~~----~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-DN-TV----LAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-SS-CE----EEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-CC-eE----EEEecCCCCcCcHHhc--
Confidence 9999999999999999999999999999999999999999999999999997 33 22 3677 99999999873
Q ss_pred hcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHH
Q 007465 501 QDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFIT 559 (603)
Q Consensus 501 l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~ 559 (603)
.+ .. ++++++++|+++|+++.|++++|.++++..+.+...+.+....+.
T Consensus 152 -~~-----~~----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 152 -KE-----QV----IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp -SS-----SC----CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred -cC-----CC----CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 32 11 147889999999999999999999999966667776666665433
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.83 E-value=2.7e-20 Score=183.28 Aligned_cols=181 Identities=12% Similarity=0.151 Sum_probs=122.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhCccccCCCcccccchhHHHHHhhcChhHHHHHHHHhhcccccchhhhHHHHHHH
Q 007465 97 NDLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEFSFAVKFFLFQ 176 (603)
Q Consensus 97 ~~~~~~~~~~~~~~D~~f~~Di~l~f~t~~~~~~~Vd~k~~F~iDlls~lP~~~l~~i~~~~~~~~~~~~~~~Lr~~~~~ 176 (603)
......+.++|.++|++|.+|++++|.++.++.. -- .++++|+++++|++... . +..+ ......+|.+
T Consensus 35 ~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~~--y~-~~~iiDllailP~~~~~-~----~~~~-~~~~~~lr~l--- 102 (223)
T 1orq_C 35 GEYLVRLYLVDLILVIILWADYAYRAYKSGDPAG--YV-KKTLYEIPALVPAGLLA-L----IEGH-LAGLGLFRLV--- 102 (223)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHHHHHHTTSCHHH--HH-HHHHHHCTTHHHHHHHH-H----HHHH-HHTTTCHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcccccHHH--HH-HHhHHHHHHHHHHHHHH-H----Hhcc-hhHHHHHHHH---
Confidence 4456678899999999999999999997721100 00 23899999999998765 2 1110 0001124443
Q ss_pred HHHHHHHHHHHHHHhccccc-hhhhh-H-HH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCcccccCC
Q 007465 177 HVLRTIQIYRVYMKAQVPSR-HAELA-L-GF---SFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFYCDD 250 (603)
Q Consensus 177 ~l~RllRi~rl~~~~~~~~~-~~e~~-~-~~---l~~~~l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~~~~ 250 (603)
|++|++|+.|+.+...+... +.+.. . .+ ++..++..|+.||++|.+...
T Consensus 103 RllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~------------------------- 157 (223)
T 1orq_C 103 RLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYP------------------------- 157 (223)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------------------
Confidence 35555555555443333211 11211 1 12 344446789999999865310
Q ss_pred CcccccccccccCCCCCCCCccccccchhccccCcccccchHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHH
Q 007465 251 HLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITA 330 (603)
Q Consensus 251 ~~~~~~Wl~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i 330 (603)
+++ +....|..|+||+++||||+||||++|+|+.|+++++++|+
T Consensus 158 --~~~----------------------------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~ 201 (223)
T 1orq_C 158 --DPN----------------------------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVML 201 (223)
T ss_dssp --STT----------------------------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHH
T ss_pred --CcC----------------------------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHH
Confidence 000 11135788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 007465 331 CGVWLLVILVGKIQTYTKSG 350 (603)
Q Consensus 331 ~G~~~fa~iig~i~~il~~~ 350 (603)
+|.+++|+.+|.+++.+++.
T Consensus 202 ~G~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 202 TGISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.75 E-value=8.2e-18 Score=155.31 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=113.2
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe
Q 007465 395 IENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS 474 (603)
Q Consensus 395 e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~ 474 (603)
.+++++.||++||.++..+++.+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHH
Q 007465 475 EGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQ 553 (603)
Q Consensus 475 ~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~ 553 (603)
+ .. +..+ +|++||+.+++ .+ .. .+++++++|.++|+++.|++++|.++++..+.+.+.+.+
T Consensus 85 -~-~~----~~~~~~G~~fG~~~~~---~~-----~~----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~ 146 (160)
T 4f8a_A 85 -D-EV----VAILGKGDVFGDVFWK---EA-----TL----AQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSR 146 (160)
T ss_dssp -T-EE----EEEEETTCEEECCTTT---CS-----SC----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred -C-EE----EEEecCCCEeCcHHHh---cC-----cc----cceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 3567 99999999773 22 10 147789999999999999999999999855555554443
No 7
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.75 E-value=3.6e-18 Score=163.38 Aligned_cols=169 Identities=14% Similarity=0.049 Sum_probs=113.6
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fG 493 (603)
..+++++|.|.+++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++. .+..+ +|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~--~~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQ--TTQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEE--EEEEccCCcEEe
Confidence 45778899999999999999999999999999999999999999999999999999974 333331 23455 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcc
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPST 573 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~ 573 (603)
|...+ +.+ . ++.++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+..
T Consensus 84 e~~~~--~~~-----~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l--~~~~~~~~~l~~ 148 (194)
T 3dn7_A 84 DYMAF--QKQ-----Q------PADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSF--AAAQLRSKFQHM 148 (194)
T ss_dssp CHHHH--HHT-----C------BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred ehHHH--hcC-----C------CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHH--HHHHHHHHHHhc
Confidence 98432 222 1 36779999999999999999999999966666666665554322 234667778889
Q ss_pred cchhhhccCCCCcccccchhhhhhhhcc
Q 007465 574 RTAETSTQEQVPPTIRSKQLVETQIIAK 601 (603)
Q Consensus 574 ~~a~er~~~~~~~~~~~~~~~~~~~ia~ 601 (603)
.++++|+..++...|++.+++|+++||.
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~ 176 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLAS 176 (194)
T ss_dssp C---------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHH
Confidence 9999999999999999999999999996
No 8
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.72 E-value=8.3e-18 Score=184.73 Aligned_cols=184 Identities=15% Similarity=0.173 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCccccCCCcccccchhHHHHHhhcChhHHHHHHHHhhcccccch--hhhHHHHHHHH
Q 007465 100 WIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVLLILAMIQRMRGTEF--SFAVKFFLFQH 177 (603)
Q Consensus 100 ~~~~~~~~~~~D~~f~~Di~l~f~t~~~~~~~Vd~k~~F~iDlls~lP~~~l~~i~~~~~~~~~~~~--~~~Lr~~~~~~ 177 (603)
...+.++|.+++++|.+|+++++.++-.+..- =+..|.++|+++++|+.+.. +. +...++.. ...+++++
T Consensus 238 ~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y-~ks~wniiDli~iip~~i~l-~~---~~~~~~~~~~~~~~~~lr--- 309 (514)
T 2r9r_B 238 TDPFFIVETLCIIWFSFEFLVRFFACPSKAGF-FTNIMNIIDIVAIIPYYVTI-FL---TESNKSVLQFQNVRRVVQ--- 309 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSS-TTSHHHHHHHHTTHHHHHHH-HH---HHTSCSHHHHHTTHHHHH---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH-HhchhHHHHHHHHHHHHHHH-Hh---hhccccchhhhhHHHHHH---
Confidence 45688999999999999999999865111000 11168999999999987654 22 11111111 11133333
Q ss_pred HHHHHHHHHHHHHhccccc---hhhhh------HHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhcCCCCCCCcccc
Q 007465 178 VLRTIQIYRVYMKAQVPSR---HAELA------LGF-SFSYIQTSNVIGALWYFFAIKSESVCWKKACINHDGCGDGSFY 247 (603)
Q Consensus 178 l~RllRi~rl~~~~~~~~~---~~e~~------~~~-l~~~~l~~H~~aCiwy~i~~~~~~~~~~~~c~~~~~c~~~~~~ 247 (603)
++|++|+.|+++.++...+ +..+. .++ +++.++..+++||++|++..
T Consensus 310 vlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~----------------------- 366 (514)
T 2r9r_B 310 IFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA----------------------- 366 (514)
T ss_dssp HHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeec-----------------------
Confidence 3344444444433333322 22222 111 22223556777887774321
Q ss_pred cCCCcccccccccccCCCCCCCCccccccchhccccCcccccchHHHHHHHHHHHhhhccccccCCCCCCChhHHHHHHH
Q 007465 248 CDDHLEDRKFLNGFCPTNNQNSTIFDFGIFSDAFQSGVVETKDFKRRLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAIC 327 (603)
Q Consensus 248 ~~~~~~~~~Wl~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~ 327 (603)
.... +.+..|..|+||++.||||+||||+.|.+..+++++++
T Consensus 367 ----~~~~----------------------------------~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~ 408 (514)
T 2r9r_B 367 ----DERD----------------------------------SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSL 408 (514)
T ss_dssp ----TCTT----------------------------------CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHH
T ss_pred ----cCCC----------------------------------ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehh
Confidence 0000 11234667999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 328 ITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 328 ~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
+|++|.+++++.+|.+.+.++....
T Consensus 409 ~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 409 CAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987766554
No 9
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.66 E-value=1e-16 Score=155.66 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=129.3
Q ss_pred hhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechh
Q 007465 419 LKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEEL 496 (603)
Q Consensus 419 L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~ 496 (603)
|+++|+|++++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++.. .+|++. .+..+ +|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQER--TLALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEE--EEEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEEeehh
Confidence 57899999999999999999999999999999999999999999999999999974 233331 23556 999999987
Q ss_pred hhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccch
Q 007465 497 VAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTA 576 (603)
Q Consensus 497 l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a 576 (603)
++ .+ . +++++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+...++
T Consensus 79 ~~---~~-----~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~ 142 (216)
T 4ev0_A 79 LL---DE-----G------ERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRL--READLELDLLSFEEA 142 (216)
T ss_dssp HH---HC-----C------BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred hc---CC-----C------CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHH--HHHHHHHHHHhcCCH
Confidence 73 33 1 36779999999999999999999999855556555555544332 223556666777889
Q ss_pred hhhccCCC----Ccccccchhhhhhhhcc
Q 007465 577 ETSTQEQV----PPTIRSKQLVETQIIAK 601 (603)
Q Consensus 577 ~er~~~~~----~~~~~~~~~~~~~~ia~ 601 (603)
++|+..++ +..+.+...+++++||.
T Consensus 143 ~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~ 171 (216)
T 4ev0_A 143 RNRVAYALLKLLRQGLGPLFQIRHHELAA 171 (216)
T ss_dssp HHHHHHHHHHHHHTTCCSEEECCHHHHHH
T ss_pred HHHHHHHHHHHhhcCCccCCCCCHHHHHH
Confidence 99988776 33456777889999985
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.65 E-value=7.5e-16 Score=139.03 Aligned_cols=125 Identities=15% Similarity=0.217 Sum_probs=110.3
Q ss_pred hchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCccc
Q 007465 401 NLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAA 480 (603)
Q Consensus 401 ~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~ 480 (603)
.+|+.+|.+...+...++|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|++.. +| +.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g-~~- 83 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG-VK- 83 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TT-EE-
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CC-EE-
Confidence 5888899999999999999999999999999999999999999999999999999999999999999999965 34 32
Q ss_pred CCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhccc
Q 007465 481 PPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKH 545 (603)
Q Consensus 481 ~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~ 545 (603)
+..+ +|++|||.+++ .+ . +++++++|+++|+++.|++++|.++++..+
T Consensus 84 ---~~~~~~G~~fGe~~~l---~~-----~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 84 ---LCTMGPGKVFGELAIL---YN-----C------TRTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp ---EEEECTTCEESCHHHH---HC-----C------CCSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred ---EEEeCCCCEeccHHHH---CC-----C------CcceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence 3667 99999999873 32 1 477899999999999999999999998433
No 11
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.64 E-value=3e-16 Score=154.87 Aligned_cols=171 Identities=9% Similarity=0.020 Sum_probs=133.0
Q ss_pred HHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCC
Q 007465 413 ELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCN 490 (603)
Q Consensus 413 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~ 490 (603)
....+.|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++.. .+|++. .+..+ +|+
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~ 84 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEA--VVSVFTRGE 84 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE--EEEEeCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999974 333331 23556 999
Q ss_pred eeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCC
Q 007465 491 ICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFL 570 (603)
Q Consensus 491 ~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~ 570 (603)
+||+.+++ .+ . +++++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...
T Consensus 85 ~~G~~~~~---~~-----~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l--~~~~~~~~~ 148 (237)
T 3fx3_A 85 SFGEAVAL---RN-----T------PYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHL--HSLVAQLEQ 148 (237)
T ss_dssp EECHHHHH---HT-----C------CCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred EechHHHh---cC-----C------CCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 99999883 33 2 36779999999999999999999999865666665655554332 223566677
Q ss_pred CcccchhhhccCCCCcc-----cccchhhh--hhhhcc
Q 007465 571 PSTRTAETSTQEQVPPT-----IRSKQLVE--TQIIAK 601 (603)
Q Consensus 571 ~~~~~a~er~~~~~~~~-----~~~~~~~~--~~~ia~ 601 (603)
+...++++|+..++... +.....+| +++||.
T Consensus 149 l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~ 186 (237)
T 3fx3_A 149 LKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAG 186 (237)
T ss_dssp CCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHH
Confidence 78899999987665432 33445666 788885
No 12
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=1.1e-15 Score=150.70 Aligned_cols=168 Identities=9% Similarity=0.058 Sum_probs=133.7
Q ss_pred HHHhhcchhhhhchHHHHHHHHhh--ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe--CCCcccCCCceec-CCC
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEF--VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS--EGITAAPPNTDNY-DCN 490 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~--l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~--~~~~~~~~~~~~l-~G~ 490 (603)
...++++|+|++++++.++.++.. ++.+.|++|++|+++||.++.+|||.+|.|+++.. +|.+. .+..+ +|+
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~---~l~~~~~G~ 93 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYT---VIEQIEAPY 93 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCE---EEEEEESSE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEE---EEEEccCCC
Confidence 567899999999999999999998 99999999999999999999999999999999863 33333 23556 999
Q ss_pred eeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCC
Q 007465 491 ICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFL 570 (603)
Q Consensus 491 ~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~ 570 (603)
+||+.+++ .+ .+ ++.++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...
T Consensus 94 ~fG~~~~~---~~-----~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l--~~~~~~~~~ 158 (232)
T 1zyb_A 94 LIEPQSLF---GM-----NT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRA--QNLYSRLWD 158 (232)
T ss_dssp EECGGGGS---SS-----CC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHH--HHHHHHTTS
T ss_pred eeeehHHh---CC-----CC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 99999873 33 21 26779999999999999999999999866666666665554332 233667778
Q ss_pred CcccchhhhccCCCCc---cc--ccchhhhhhhhcc
Q 007465 571 PSTRTAETSTQEQVPP---TI--RSKQLVETQIIAK 601 (603)
Q Consensus 571 ~~~~~a~er~~~~~~~---~~--~~~~~~~~~~ia~ 601 (603)
+...++++|+..++.. .+ .+...+++++||.
T Consensus 159 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~ 194 (232)
T 1zyb_A 159 EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLAR 194 (232)
T ss_dssp CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHH
Confidence 8889999997765432 22 4566889999985
No 13
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.61 E-value=2.1e-15 Score=143.83 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=114.7
Q ss_pred HHHHHhhchhhH----HHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEE
Q 007465 395 IENLVYNLPEDL----GRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLL 470 (603)
Q Consensus 395 e~~ll~~Lp~~L----r~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~ 470 (603)
+..+.+.++|++ +.+...+...+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 445556666553 3445566678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC-CCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchh
Q 007465 471 TYNSE-GITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRA 548 (603)
Q Consensus 471 v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~ 548 (603)
++..+ +|++. .+..+ +|++|||.+++ .+ . +++++++|+++|+++.+++++|.++++..+.+.
T Consensus 93 v~~~~~~g~~~--~~~~~~~G~~fGe~~~l---~~-----~------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~ 156 (187)
T 3gyd_A 93 VIKDIPNKGIQ--TIAKVGAGAIIGEMSMI---DG-----M------PRSASCVASLPTDFAVLSRDALYQLLANMPKLG 156 (187)
T ss_dssp EEEEETTTEEE--EEEEEETTCEESHHHHH---HC-----C------CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHH
T ss_pred EEEECCCCCeE--EEEEccCCCeeeeHHHh---CC-----C------CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHH
Confidence 99743 33331 23556 99999999873 33 2 477899999999999999999999999555555
Q ss_pred hhHH
Q 007465 549 APFI 552 (603)
Q Consensus 549 ~~~i 552 (603)
..+.
T Consensus 157 ~~l~ 160 (187)
T 3gyd_A 157 NKVL 160 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 14
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.61 E-value=3.4e-16 Score=153.34 Aligned_cols=168 Identities=14% Similarity=0.138 Sum_probs=131.1
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fG 493 (603)
.+.++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++. .+..+ +|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGREN--LLTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEE--EEEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEE--EEEEecCCCEEe
Confidence 457899999999999999999999999999999999999999999999999999999743 33331 23556 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcc
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPST 573 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~ 573 (603)
+.+++ .+ . +++++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+..
T Consensus 83 ~~~~~---~~-----~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l--~~~~~~~~~l~~ 146 (227)
T 3d0s_A 83 ELSIF---DP-----G------PRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRL--RRTNNNLADLIF 146 (227)
T ss_dssp CHHHH---SC-----S------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred eHHHc---CC-----C------CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH--HHHHHHHHHHhc
Confidence 99873 33 1 47779999999999999999999999865555555555544322 222455566677
Q ss_pred cchhhhccCCCCc-----------ccccchhhhhhhhcc
Q 007465 574 RTAETSTQEQVPP-----------TIRSKQLVETQIIAK 601 (603)
Q Consensus 574 ~~a~er~~~~~~~-----------~~~~~~~~~~~~ia~ 601 (603)
.++++|+..++.. .+.+...+++++||.
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~ 185 (227)
T 3d0s_A 147 TDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQ 185 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHH
Confidence 8899997765432 344666789999985
No 15
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.61 E-value=6.4e-16 Score=150.43 Aligned_cols=167 Identities=10% Similarity=0.012 Sum_probs=129.4
Q ss_pred HHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCe--e
Q 007465 417 ELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNI--C 492 (603)
Q Consensus 417 ~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~--f 492 (603)
++++++|+|++++++.++.+...++.+.|++|++|+++||.++.+|||.+|.|+++.. .+|++. .+..+ +|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREI--TLYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEE--EEEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEE--EEEecCCCCeeeh
Confidence 5789999999999999999999999999999999999999999999999999999973 333331 23555 9999 7
Q ss_pred echhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCc
Q 007465 493 GEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPS 572 (603)
Q Consensus 493 Ge~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~ 572 (603)
|+.+++ .+ . +++++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+.
T Consensus 81 g~~~~~---~~-----~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l--~~~~~~~~~~~ 144 (220)
T 3dv8_A 81 SASCIM---RS-----I------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRF--SDVMWLIEQIM 144 (220)
T ss_dssp GGGGGC---TT-----C------CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hHHHHh---CC-----C------CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 888772 33 1 36779999999999999999999999865556665555444322 22245556677
Q ss_pred ccchhhhccCCCCcccccc----hhhhhhhhcc
Q 007465 573 TRTAETSTQEQVPPTIRSK----QLVETQIIAK 601 (603)
Q Consensus 573 ~~~a~er~~~~~~~~~~~~----~~~~~~~ia~ 601 (603)
..++++|+..++...++.. ..+++++||.
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~ 177 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIAN 177 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHH
Confidence 8899999888776655433 3678888885
No 16
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.60 E-value=2.1e-15 Score=138.88 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHH
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGM 356 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~-~~~~ 356 (603)
.|..|+||+++|||||||||++|.|..+++++++++++|.+++|+.+|.+++.+.+... +++.
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~ 147 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGH 147 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999998776 4443
No 17
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.60 E-value=5.5e-15 Score=133.23 Aligned_cols=127 Identities=16% Similarity=0.156 Sum_probs=102.8
Q ss_pred HHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe--CCCcccCCCceec-CCCeee
Q 007465 417 ELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS--EGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 417 ~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~--~~~~~~~~~~~~l-~G~~fG 493 (603)
+.|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++.. +|++.....+..+ +|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 4688999999999999999999999999999999999999999999999999999863 3323210003566 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHH
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARF 557 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~ 557 (603)
+.+++ .+ . +++++++|.++|+++.|++++|.++++..+.+...+++....
T Consensus 86 ~~~~~---~~-----~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 86 VSSLI---KP-----Y------HYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp GGGSS---TT-----C------BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHc---CC-----C------CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99873 32 1 477799999999999999999999998666666666665554
No 18
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.59 E-value=6.6e-15 Score=133.70 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=110.6
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fG 493 (603)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++. .+..+ +|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGREN--MLAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEE--EEEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEE--EEEEcCCcCEec
Confidence 356889999999999999999999999999999999999999999999999999999743 33331 13556 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcc
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPST 573 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~ 573 (603)
+.+++ .+ . ++.++++|+++|+++.+++++|.++++..+.+...+.+....+. ....++...+..
T Consensus 82 ~~~~~---~~-----~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l--~~~~~~~~~l~~ 145 (149)
T 2pqq_A 82 ELSLF---DP-----G------PRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRL--RKTNDAMSDLVF 145 (149)
T ss_dssp GGGGT---SC-----E------ECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHH--HHHHTTC--CCC
T ss_pred hHHhc---CC-----C------CcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHH--HHHHHHHHHHhc
Confidence 99773 32 1 36779999999999999999999999966666666665554333 222455555544
Q ss_pred cch
Q 007465 574 RTA 576 (603)
Q Consensus 574 ~~a 576 (603)
.++
T Consensus 146 ~~~ 148 (149)
T 2pqq_A 146 SDG 148 (149)
T ss_dssp CSC
T ss_pred ccC
Confidence 443
No 19
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.59 E-value=4.9e-15 Score=137.27 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec
Q 007465 408 RDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY 487 (603)
Q Consensus 408 ~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l 487 (603)
.+-......+.|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++...+|+.. .+..+
T Consensus 29 ~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~--~~~~~ 106 (161)
T 3idb_B 29 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR--CVGNY 106 (161)
T ss_dssp CHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEE--EEEEE
T ss_pred CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeE--EEEEc
Confidence 3444556678999999999999999999999999999999999999999999999999999999984444431 23556
Q ss_pred -CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 488 -DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 488 -~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
+|++|||.+++ .+ . +++++++|+++|+++.|++++|.++++
T Consensus 107 ~~G~~fGe~~~~---~~-----~------~~~~~v~A~~~~~~~~i~~~~~~~l~~ 148 (161)
T 3idb_B 107 DNRGSFGELALM---YN-----T------PRAATITATSPGALWGLDRVTFRRIIV 148 (161)
T ss_dssp ESCCEECGGGGT---CC-----C------CCSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred CCCCEechHHHH---cC-----C------CcccEEEECCCeEEEEEeHHHHHHHHH
Confidence 99999999883 33 2 477899999999999999999999998
No 20
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.59 E-value=3.8e-15 Score=133.81 Aligned_cols=122 Identities=40% Similarity=0.680 Sum_probs=98.1
Q ss_pred HHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeech
Q 007465 417 ELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEE 495 (603)
Q Consensus 417 ~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~ 495 (603)
++|+++|+|++++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++..+++++....+..+ +|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 35789999999999999999999999999999999999999999999999999977544444422112277 99999999
Q ss_pred hhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhc
Q 007465 496 LVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLI 543 (603)
Q Consensus 496 ~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~ 543 (603)
++++.+.+ .+...+++++++++|+++|+++.|++++|.++++.
T Consensus 86 ~l~~~~~~-----~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~ 128 (137)
T 1wgp_A 86 LLTWALDP-----KSGSNLPSSTRTVKALTEVEAFALIADELKFVASQ 128 (137)
T ss_dssp HHHHHHCS-----SCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHH
T ss_pred HHHHHhcc-----ccccccccceeEEEEeEEEEEEEECHHHHHHHHHH
Confidence 85212343 32222224678999999999999999999999983
No 21
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.59 E-value=5.3e-16 Score=151.78 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=129.6
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fG 493 (603)
.++|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++. .+..+ +|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK--ILEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCB--CCCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEee
Confidence 468899999999999999999999999999999999999999999999999999998732 23331 23566 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcc
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPST 573 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~ 573 (603)
+.+++ .+ .+ .+.++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+..
T Consensus 86 ~~~~~---~~-----~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l--~~~~~~~~~~~~ 150 (227)
T 3dkw_A 86 EAMMF---MD-----TP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL--HQRIDEIETLSL 150 (227)
T ss_dssp CTTTT---TT-----CS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred eHHhc---CC-----CC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHhc
Confidence 99873 33 11 26779999999999999999999999866666655555544333 112344555566
Q ss_pred cchhhhccCCCCc-c-------cccchhhhhhhhcc
Q 007465 574 RTAETSTQEQVPP-T-------IRSKQLVETQIIAK 601 (603)
Q Consensus 574 ~~a~er~~~~~~~-~-------~~~~~~~~~~~ia~ 601 (603)
.++++|+..++-. . ..+...+++++||.
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~ 186 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAG 186 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHH
Confidence 7888887665321 2 23566788999986
No 22
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.59 E-value=1.9e-15 Score=148.53 Aligned_cols=163 Identities=10% Similarity=0.059 Sum_probs=126.6
Q ss_pred hcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe--CCCcccCCCceec-CCCeeechh
Q 007465 420 KKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS--EGITAAPPNTDNY-DCNICGEEL 496 (603)
Q Consensus 420 ~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~--~~~~~~~~~~~~l-~G~~fGe~~ 496 (603)
.++|+|++++++.++.++..++.+.|+||++|+++||.++.+|||.+|.|+++.. +|.+. .+..+ +|++||+.+
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~---~~~~~~~G~~~G~~~ 89 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH---ISRIVKPGQFFGMRP 89 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCC---EEEEECTTCEESHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE---EEEEeCCCCEeeeeh
Confidence 3579999999999999999999999999999999999999999999999999963 34332 23566 999999998
Q ss_pred hhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccch
Q 007465 497 VAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTA 576 (603)
Q Consensus 497 l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a 576 (603)
++ .+ . ++.++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+...++
T Consensus 90 ~~---~~-----~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l--~~~~~~~~~l~~~~~ 153 (232)
T 2gau_A 90 YF---AE-----E------TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKEL--GYAERRTVTLTQKHV 153 (232)
T ss_dssp HH---HT-----S------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHHSCH
T ss_pred hh---CC-----C------CcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCH
Confidence 73 33 2 36779999999999999999999999855556655555544322 222455556677888
Q ss_pred hhhccCCCC----------cccccchhhhhhhhcc
Q 007465 577 ETSTQEQVP----------PTIRSKQLVETQIIAK 601 (603)
Q Consensus 577 ~er~~~~~~----------~~~~~~~~~~~~~ia~ 601 (603)
++|+..++- ..+.+...+++++||.
T Consensus 154 ~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~ 188 (232)
T 2gau_A 154 RGRLAETLLILKENFGFENDGATLSIYLSREELAT 188 (232)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHH
Confidence 999776651 1355667889999986
No 23
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.59 E-value=1.5e-15 Score=149.15 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=126.7
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fG 493 (603)
.++|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++. .+..+ +|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRER--VLGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEE--EEEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceE--EEEecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999999743 33331 23556 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcc
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPST 573 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~ 573 (603)
+.+++ .+ . ++.++++|+++|+++.+++++|.+++...+.+...+.+....+... ..++.. ..
T Consensus 83 ~~~~~---~~-----~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~--~~~~~~--~~ 144 (231)
T 3e97_A 83 ETAVL---AH-----Q------ERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTF--LNDELI--AF 144 (231)
T ss_dssp TTTTT---CC-----C------CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH--HHHHHH--HH
T ss_pred eHHHh---CC-----C------CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH--HHHHHH--Hh
Confidence 99873 32 1 4778999999999999999999999985555555555544432211 122332 45
Q ss_pred cchh-hhccCCCCccc----------ccchhhhhhhhcc
Q 007465 574 RTAE-TSTQEQVPPTI----------RSKQLVETQIIAK 601 (603)
Q Consensus 574 ~~a~-er~~~~~~~~~----------~~~~~~~~~~ia~ 601 (603)
.+++ +|+..++...+ .+...+++++||.
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~ 183 (231)
T 3e97_A 145 GQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMA 183 (231)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHH
Confidence 6777 88777655443 3455788999985
No 24
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.58 E-value=2.5e-15 Score=147.28 Aligned_cols=169 Identities=8% Similarity=0.040 Sum_probs=119.1
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fG 493 (603)
...+++.++|.+++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++..+ +|++. .+..+ +|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDREL--VLGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEE--EEEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEEE
Confidence 457889999999999999999999999999999999999999999999999999999732 33331 23556 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcc-----cchhhhHHHHHHHHHHhhhhcccc
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIK-----HNRAAPFIQAARFITIVMGAIKGT 568 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~-----~~~~~~~i~~~~~~~~~~~~~~r~ 568 (603)
|.+++ .+ .. +++++++|+++|+++.+++++|.+++... +.+...+.+....+. ....++.
T Consensus 88 ~~~~~---~~-----~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l--~~~~~~~ 152 (230)
T 3iwz_A 88 EMGLF---IE-----SD-----TREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRL--LDTTRKA 152 (230)
T ss_dssp CGGGT---SC-----CS-----BCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred ehhhh---cC-----CC-----CceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--HHHHHHH
Confidence 99873 32 21 36779999999999999999999999954 555555555544322 2235566
Q ss_pred CCCcccchhhhccCCCCc----------ccccchhhhhhhhcc
Q 007465 569 FLPSTRTAETSTQEQVPP----------TIRSKQLVETQIIAK 601 (603)
Q Consensus 569 ~~~~~~~a~er~~~~~~~----------~~~~~~~~~~~~ia~ 601 (603)
..+...++++|+..++-. .......+++++||.
T Consensus 153 ~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~ 195 (230)
T 3iwz_A 153 SRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELAR 195 (230)
T ss_dssp HHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHH
Confidence 677788899996655321 112334678899985
No 25
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.56 E-value=3e-14 Score=127.92 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=104.4
Q ss_pred HHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 415 CLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 415 ~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
..+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ . ..+ +|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3568999999999999999999999999999999999999999999999999999998643 2 467 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHH
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARF 557 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~ 557 (603)
+.+++ .+ . +++.+++|+++|+++.|++++|.++++..+.+...+.+.+..
T Consensus 81 ~~~~~---~~-----~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMALI---SG-----E------PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHHH---HC-----C------CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHhc---cC-----C------CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99873 33 2 366799999999999999999999998666666666665543
No 26
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.56 E-value=6.9e-14 Score=127.75 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=104.9
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fG 493 (603)
.+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++. .+..+ +|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK--ILEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-------CCEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEE--EEEEccCCCeec
Confidence 567999999999999999999999999999999999999999999999999999999742 23331 23566 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHH
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFI 558 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~ 558 (603)
+.+++ .+ .+ ++.++++|+++|+++.|++++|.++++..+.+...+.+....+
T Consensus 89 ~~~~~---~~-----~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~r 140 (154)
T 2z69_A 89 EAMMF---MD-----TP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR 140 (154)
T ss_dssp GGGGG---SS-----CS-----BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHhhc---cC-----CC-----CCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99873 33 11 2677999999999999999999999986666666666655543
No 27
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.54 E-value=2.2e-15 Score=147.01 Aligned_cols=160 Identities=9% Similarity=0.004 Sum_probs=126.3
Q ss_pred HHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeech
Q 007465 417 ELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEE 495 (603)
Q Consensus 417 ~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~ 495 (603)
.+|+++|+|++++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++...+|++. .+..+ +|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~--~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEF--TLAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEE--EEEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEE--EEEEcCCCCEeCC-
Confidence 3578899999999999999999999999999999999999999999999999999754444431 23556 9999998
Q ss_pred hhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccc
Q 007465 496 LVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRT 575 (603)
Q Consensus 496 ~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~ 575 (603)
+ +.++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+...+
T Consensus 81 -------~-------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 138 (220)
T 2fmy_A 81 -------H-------------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLL--KNSLTIINGLVFKD 138 (220)
T ss_dssp -------C-------------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH--HHHHHHHHHHHTHH
T ss_pred -------c-------------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHcCC
Confidence 2 3348999999999999999999999866666666655554332 22355566677788
Q ss_pred hhhhccCCCCcccc-----------cchhhhhhhhcc
Q 007465 576 AETSTQEQVPPTIR-----------SKQLVETQIIAK 601 (603)
Q Consensus 576 a~er~~~~~~~~~~-----------~~~~~~~~~ia~ 601 (603)
+++|+..++...++ +...+++++||.
T Consensus 139 ~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~ 175 (220)
T 2fmy_A 139 ARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIAL 175 (220)
T ss_dssp HHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHH
Confidence 99998777554332 556788899985
No 28
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.54 E-value=4.7e-14 Score=129.68 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=97.4
Q ss_pred HHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCe
Q 007465 413 ELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNI 491 (603)
Q Consensus 413 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~ 491 (603)
....++|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +| +. +..+ +|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~-~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-EW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-TT-EE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-CC-EE----EEEecCCCE
Confidence 4456789999999999999999999999999999999999999999999999999999997 33 32 3567 9999
Q ss_pred eechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 492 CGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 492 fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
||+.+++ .+ . +++++++|+++|+++.|++++|.+++.
T Consensus 108 fGe~~~~---~~-----~------~~~~~v~A~~~~~~~~i~~~~~~~ll~ 144 (154)
T 3pna_A 108 FGELALI---YG-----T------PRAATVKAKTNVKLWGIDRDSYRRILM 144 (154)
T ss_dssp ECCHHHH---HC-----C------CCSSEEEESSCEEEEEEEHHHHHHHTH
T ss_pred eeehHhh---cC-----C------CcceEEEECcceEEEEEeHHHHHHHHH
Confidence 9999883 33 2 367799999999999999999999987
No 29
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.53 E-value=4.9e-15 Score=132.86 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEec-CCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccC
Q 007465 403 PEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFM-ENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAP 481 (603)
Q Consensus 403 p~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~-~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~ 481 (603)
||+.|.+-......++|+++++|.+++++.++.++..++.+.|+ +|++|+++|+.++.+|||.+|.|+++..+| +.
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g-~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDG-KV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSS-CE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCC-cE--
Confidence 34444444444556788999999999999999999999999999 999999999999999999999999997544 33
Q ss_pred CCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEE-EEeceEEEEEeCHHhHHHHHh
Q 007465 482 PNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITI-QALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 482 ~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv-~Al~~~~l~~L~~~df~~ll~ 542 (603)
.++ +|++||+.+++ .. . ++.+++ +|+++|+++.|++++|.++++
T Consensus 79 ---~~l~~G~~fG~~~~~---~~-----~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~ 124 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---DK-----Q------YMHGIVRTKVDDCQFVCIAQQDYWRILN 124 (134)
T ss_dssp ---EEECTTCEESCCSSS---CC-----E------ECCSEEEESSSSEEEEEEEHHHHHHHSS
T ss_pred ---EEecCCCccChhHhc---CC-----C------cceeEEEEEecceEEEEEeHHHHHHHHH
Confidence 467 99999999873 32 1 355678 999999999999999999987
No 30
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.53 E-value=2.4e-14 Score=126.78 Aligned_cols=59 Identities=10% Similarity=0.272 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
.|..|+||++.|+|||||||++|.|..+++++++.+++|..++|+.+|.+++.+.+..+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999876543
No 31
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.53 E-value=7.1e-14 Score=128.22 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=70.1
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----hcH-HHHHHHHHHHH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQT------YTKS----GSI-LEGMRQKEKEL 363 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~------il~~----~~~-~~~~~~~~~~i 363 (603)
|..|+||++.|+|||||||++|.|..+++++++.+++|++++++.+|.+++ +... .+. ..+.+++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999999999999999999999999999999987 3332 345 66667889999
Q ss_pred HhhccCccCCHHHHHH
Q 007465 364 EQWLPFRKLSQNLQQQ 379 (603)
Q Consensus 364 ~~~m~~~~lp~~L~~r 379 (603)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 32
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.52 E-value=4.7e-15 Score=144.88 Aligned_cols=159 Identities=9% Similarity=-0.028 Sum_probs=123.2
Q ss_pred HhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechh
Q 007465 418 LLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEEL 496 (603)
Q Consensus 418 ~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~ 496 (603)
+|+++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++...+|++. .+..+ +|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~--~~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREI--SLFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEE--EEEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEE--EEEEcCCCCEec---
Confidence 367899999999999999999999999999999999999999999999999999753344431 23556 999999
Q ss_pred hhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccch
Q 007465 497 VAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTA 576 (603)
Q Consensus 497 l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a 576 (603)
. +++++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+...++
T Consensus 76 ------~------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l--~~~~~~~~~l~~~~~ 135 (222)
T 1ft9_A 76 ------M------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRAL--TSCMRTIEDLMFHDI 135 (222)
T ss_dssp ------S------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHH--HHHHHHHHHHHTHHH
T ss_pred ------C------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH--HHHHHHHHHHhcCCH
Confidence 1 25569999999999999999999999855666666655544332 222555566677888
Q ss_pred hhhccCCCCccc-----------ccchhhhhhhhcc
Q 007465 577 ETSTQEQVPPTI-----------RSKQLVETQIIAK 601 (603)
Q Consensus 577 ~er~~~~~~~~~-----------~~~~~~~~~~ia~ 601 (603)
++|+..++...+ .+...+++++||.
T Consensus 136 ~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~ 171 (222)
T 1ft9_A 136 KQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIAN 171 (222)
T ss_dssp HHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHH
Confidence 999776543322 3556788999985
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.52 E-value=4.2e-14 Score=144.54 Aligned_cols=126 Identities=13% Similarity=0.210 Sum_probs=111.5
Q ss_pred HHHhhchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCC
Q 007465 397 NLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEG 476 (603)
Q Consensus 397 ~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~ 476 (603)
.-..++|+..|.+...+...+.++++|+|++++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++. +|
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-~g 97 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG 97 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE-TT
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE-CC
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999965 33
Q ss_pred CcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 477 ITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 477 ~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
+. +..+ +|++|||.+++ .+ . +|+++++|.++|+++.|++++|.+++.
T Consensus 98 -~~----~~~~~~G~~fGe~~ll---~~-----~------~~~~tv~a~~~~~l~~i~~~~~~~i~~ 145 (299)
T 3shr_A 98 -VK----LCTMGPGKVFGELAIL---YN-----C------TRTATVKTLVNVKLWAIDRQCFQTIMM 145 (299)
T ss_dssp -EE----EEEECTTCEESCSGGG---TT-----T------BCCSEEEESSCEEEEEECHHHHHHHHH
T ss_pred -EE----EEEeCCCCeeeHhHHh---cC-----C------CCCcEEEEcCCeEEEEEcHHHHHHHhh
Confidence 22 3667 99999999883 32 1 488899999999999999999999998
No 34
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.52 E-value=8.4e-15 Score=132.39 Aligned_cols=89 Identities=11% Similarity=0.184 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhhccCccCC
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGMRQKEKELEQWLPFRKLS 373 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~-~~~~~~~~~~i~~~m~~~~lp 373 (603)
|..|+||+++|||||||||++|.|..|++++++++++|++++|+++|.+++.+.+... +.+.++.....+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 6779999999999999999999999999999999999999999999999999987776 554443333333334455666
Q ss_pred HHHHHHHHHh
Q 007465 374 QNLQQQIKYH 383 (603)
Q Consensus 374 ~~L~~rvr~y 383 (603)
++....+++|
T Consensus 124 ~~~i~~l~~~ 133 (137)
T 4h33_A 124 KEEIAVVEQF 133 (137)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 35
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.51 E-value=1.6e-14 Score=140.40 Aligned_cols=164 Identities=12% Similarity=0.114 Sum_probs=98.5
Q ss_pred chhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechhhhh
Q 007465 422 VEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEELVAW 499 (603)
Q Consensus 422 v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~l~~ 499 (603)
-|.|...+++..+.+...++.+.|++|++|+++|+.++.+|||.+|.|+++.. .+|++. .+..+ +|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTL--EIDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEE--EEEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEeeeHHHh-
Confidence 36777888999999999999999999999999999999999999999999974 233331 23556 99999999873
Q ss_pred hhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhh
Q 007465 500 AQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETS 579 (603)
Q Consensus 500 ~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er 579 (603)
.. .. ++.++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+...++++|
T Consensus 81 --~~-----~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~--~~~~~~~~~l~~~~~~~R 146 (213)
T 1o5l_A 81 --SS-----EP-----RFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHF--RVVSEKLFFLTTKTLREK 146 (213)
T ss_dssp --SS-----SC-----BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHCC-----
T ss_pred --cC-----CC-----CceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHhhCCHHHH
Confidence 32 11 36779999999999999999999999855555555555444322 122556667778899999
Q ss_pred ccCCCCccc----ccchhhhhhhhccc
Q 007465 580 TQEQVPPTI----RSKQLVETQIIAKE 602 (603)
Q Consensus 580 ~~~~~~~~~----~~~~~~~~~~ia~~ 602 (603)
+..++...+ .+...+++++||..
T Consensus 147 l~~~L~~~~~~~g~~~~~~t~~~lA~~ 173 (213)
T 1o5l_A 147 LMNFLVRHMNEKRELTLPVTLEELSRL 173 (213)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHhccCCcccCCCCHHHHHHH
Confidence 998887766 55668899999963
No 36
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.49 E-value=3.3e-14 Score=137.17 Aligned_cols=162 Identities=8% Similarity=0.002 Sum_probs=117.1
Q ss_pred hhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechhhhhh
Q 007465 423 EEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEELVAWA 500 (603)
Q Consensus 423 ~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~l~~~ 500 (603)
++++.++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++.. .+|++. .+..+ +|++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM--ILSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEE--EEEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEeeeHHHh--
Confidence 4667789999999999999999999999999999999999999999999974 333331 23556 99999999873
Q ss_pred hcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhc
Q 007465 501 QDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETST 580 (603)
Q Consensus 501 l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~ 580 (603)
.+ .. ++.++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+...++++|.
T Consensus 78 -~~-----~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~Rl 144 (210)
T 3ryp_A 78 -EE-----GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL--QVTSEKVGNLAFLDVTGRI 144 (210)
T ss_dssp -ST-----TC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH--HHHHHHHHHHHHSCHHHHH
T ss_pred -cC-----CC-----CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHH--HHHHHHHHHHhhCCHHHHH
Confidence 33 21 36779999999999999999999999855555555555444322 1224455556677888886
Q ss_pred cCCCCc---------cc-ccchhhhhhhhcc
Q 007465 581 QEQVPP---------TI-RSKQLVETQIIAK 601 (603)
Q Consensus 581 ~~~~~~---------~~-~~~~~~~~~~ia~ 601 (603)
..++-. .| .+...+++++||.
T Consensus 145 ~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~ 175 (210)
T 3ryp_A 145 AQTLLNLAKQPDAMTHPDGMQIKITRQEIGQ 175 (210)
T ss_dssp HHHHHHHTTSTTCEEETTEEEEECCHHHHHH
T ss_pred HHHHHHHHHhcCcCCCCCceEeccCHHHHHH
Confidence 544211 12 2334788899985
No 37
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.49 E-value=3.2e-14 Score=136.94 Aligned_cols=160 Identities=9% Similarity=0.032 Sum_probs=116.6
Q ss_pred chHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhhcccC
Q 007465 428 WRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQDACT 505 (603)
Q Consensus 428 ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~ 505 (603)
+|++.++.++..++.+.|+||++|+++||.++.+|||.+|.|+++..+ +|++. .+..+ +|++||+.+++ .+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~~~~~---~~-- 73 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREM--IIGYLNSGDFFGELGLF---EK-- 73 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCCcccHHHh---cC--
Confidence 578999999999999999999999999999999999999999999743 23331 23556 99999999873 33
Q ss_pred cCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCCCC
Q 007465 506 RTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVP 585 (603)
Q Consensus 506 ~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~~~ 585 (603)
... + +++.++++|+++|+++.+++++|.++++..+.+...+.+....+. ....++...+...++++|+..++-
T Consensus 74 ---~~~-~-~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~Rl~~~L~ 146 (207)
T 2oz6_A 74 ---EGS-E-QERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL--RKTTRKVGDLAFLDVTGRVARTLL 146 (207)
T ss_dssp ---------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ---CCC-C-CCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 100 0 026679999999999999999999999855555555555443322 122455556677888888755431
Q ss_pred ---c------cc-ccchhhhhhhhcc
Q 007465 586 ---P------TI-RSKQLVETQIIAK 601 (603)
Q Consensus 586 ---~------~~-~~~~~~~~~~ia~ 601 (603)
. .+ .+...+++++||.
T Consensus 147 ~l~~~~~~~~~~~~~~~~~t~~~lA~ 172 (207)
T 2oz6_A 147 DLCQQPDAMTHPDGMQIKITRQEIGR 172 (207)
T ss_dssp HHTTSTTCEEETTEEEEECCHHHHHH
T ss_pred HHHHhcCCCCCCCceecccCHHHHHH
Confidence 1 12 2455789999985
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.46 E-value=6.3e-13 Score=135.77 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=109.2
Q ss_pred HHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC--CCcccCCCceec-CC
Q 007465 413 ELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE--GITAAPPNTDNY-DC 489 (603)
Q Consensus 413 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~--~~~~~~~~~~~l-~G 489 (603)
.....+++++|+|++++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++..+ +++.. .+..+ +|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~--~~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPV--FLRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCE--EEEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcce--EEEEcCCC
Confidence 446778999999999999999999999999999999999999999999999999999999854 33321 23566 99
Q ss_pred CeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHH
Q 007465 490 NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFIT 559 (603)
Q Consensus 490 ~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~ 559 (603)
++|||.+++ .. . +|+++++|.++|+++.|++++|.+++...+.+...+.+....+.
T Consensus 231 ~~fGe~~ll---~~-----~------~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~ 286 (299)
T 3shr_A 231 DWFGEKALQ---GE-----D------VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKA 286 (299)
T ss_dssp CEECGGGGS---SS-----E------ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred CEeChHHHh---CC-----C------CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence 999999883 32 1 47889999999999999999999999965666666666555433
No 39
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.46 E-value=4.7e-13 Score=138.96 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=106.5
Q ss_pred HHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeee
Q 007465 416 LELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 416 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fG 493 (603)
.+.|+++|+|++++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++..+ ++++ .+..+ +|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA---IIARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE---EEEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE---EEEEecCCCEee
Confidence 468899999999999999999999999999999999999999999999999999999743 3333 24667 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHH
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFIT 559 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~ 559 (603)
|.+++ .+ . +++++++|+++|+++.|++++|.+++ ..+.+...+++.+....
T Consensus 89 e~~l~---~~-----~------~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 89 EIALL---RD-----S------PRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp HHHHH---HT-----C------BCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred HHHhc---CC-----C------CceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 99883 32 1 47889999999999999999999999 45567666666655433
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.44 E-value=7.1e-13 Score=130.81 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=97.6
Q ss_pred HHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 415 CLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 415 ~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
..+.|+++|+|++++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++. ++. . +..+ +|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~~~-~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-NDN-K----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-TTS-C----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-CCE-E----EEecCCCCeee
Confidence 35788999999999999999999999999999999999999999999999999999986 332 2 3677 999999
Q ss_pred chhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhccc
Q 007465 494 EELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKH 545 (603)
Q Consensus 494 e~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~ 545 (603)
|.+++ .. . +++++++|.++|+++.|++++|.+++...+
T Consensus 79 e~~l~---~~-----~------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 116 (246)
T 3of1_A 79 ELALM---YN-----S------PRAATVVATSDCLLWALDRLTFRKILLGSS 116 (246)
T ss_dssp HHHHH---HT-----C------CCSSEEEESSCEEEEEEEHHHHHHTTTTTT
T ss_pred hhHHh---cC-----C------CCCcEEEECCCeEEEEEEhHHHHHHHHHhH
Confidence 99884 33 1 478899999999999999999999998433
No 41
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.44 E-value=1.5e-13 Score=137.81 Aligned_cols=159 Identities=8% Similarity=0.018 Sum_probs=116.6
Q ss_pred hhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechhhhhhhcc
Q 007465 426 GKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEELVAWAQDA 503 (603)
Q Consensus 426 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~ 503 (603)
..++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++.. .+|++. .+..+ +|++||+.+++ ..
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~--~~~~~~~G~~~Ge~~~~---~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM--ILSYLNQGDFIGELGLF---EE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEE--EEEEEETTCEESCTTTT---ST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEEeehHHh---CC
Confidence 4589999999999999999999999999999999999999999999974 233331 23556 99999999873 33
Q ss_pred cCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCC
Q 007465 504 CTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQ 583 (603)
Q Consensus 504 ~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~ 583 (603)
.. +++++++|+++|+++.|++++|.+++...+.+...+.+....+. ....++...+...++++|...+
T Consensus 130 -----~~-----~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l--~~~~~~~~~l~~~~~~~Rla~~ 197 (260)
T 3kcc_A 130 -----GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL--QVTSEKVGNLAFLLVTGRIAQT 197 (260)
T ss_dssp -----TC-----BCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH--HHHHHHHHHHHHCCHHHHHHHH
T ss_pred -----CC-----CCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCHHHHHHHH
Confidence 21 36779999999999999999999999855556555555444322 2225555666778888887554
Q ss_pred CCc----------ccccchhhhhhhhcc
Q 007465 584 VPP----------TIRSKQLVETQIIAK 601 (603)
Q Consensus 584 ~~~----------~~~~~~~~~~~~ia~ 601 (603)
+-. ...+...+++++||.
T Consensus 198 Ll~l~~~~~~~~~~~~~~l~lt~~~lA~ 225 (260)
T 3kcc_A 198 LLNLAKQPDAMTHPDGMQIKITRQEIGQ 225 (260)
T ss_dssp HHHHHTSTTCEEETTEEEEECCHHHHHH
T ss_pred HHHHHHhcCCCCCCCceeecCCHHHHHH
Confidence 211 122334788899985
No 42
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.43 E-value=2.5e-13 Score=123.27 Aligned_cols=89 Identities=11% Similarity=0.218 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH--HHHHHHHHHHHHhhccCcc
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI--LEGMRQKEKELEQWLPFRK 371 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~--~~~~~~~~~~i~~~m~~~~ 371 (603)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+... ..++.++.+.....+-.++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 36779999999999999999999999999999999999999999999999998866554 3444444444443333333
Q ss_pred CCHHHHHHHHHh
Q 007465 372 LSQNLQQQIKYH 383 (603)
Q Consensus 372 lp~~L~~rvr~y 383 (603)
+ +++.+|+.+.
T Consensus 120 ~-~~l~~~l~~l 130 (139)
T 3eff_K 120 T-RALHERFDRL 130 (139)
T ss_dssp H-HHHHHHHHHH
T ss_pred H-HHHHHHHHHH
Confidence 3 5555555554
No 43
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.43 E-value=7.1e-13 Score=130.80 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=97.9
Q ss_pred HHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 414 LCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 414 ~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
....+++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++. +..+ +|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~-----~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGV-----INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEE-----EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCce-----EEEcCCCCcc
Confidence 44567888999999999999999999999999999999999999999999999999999865432 3677 99999
Q ss_pred echhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 493 GEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 493 Ge~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
||.+++ .. . +|+++++|.++|+++.|++++|.+++.
T Consensus 197 Ge~~~~---~~-----~------~~~~~v~a~~~~~~~~i~~~~f~~ll~ 232 (246)
T 3of1_A 197 GEVALL---ND-----L------PRQATVTATKRTKVATLGKSGFQRLLG 232 (246)
T ss_dssp CHHHHH---HT-----C------BCSSEEEESSCEEEEEEEHHHHHHHCT
T ss_pred cHHHHh---CC-----C------CcccEEEECCCEEEEEEeHHHHHHHhc
Confidence 999884 33 2 478899999999999999999999997
No 44
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.40 E-value=2.1e-12 Score=131.22 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=100.4
Q ss_pred HHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CC
Q 007465 411 KSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DC 489 (603)
Q Consensus 411 ~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G 489 (603)
..+...+.|+++|+|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +| +. +..+ +|
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g-~~----~~~l~~G 106 (291)
T 2qcs_B 33 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-EW----ATSVGEG 106 (291)
T ss_dssp HHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT-EE----EEEECTT
T ss_pred HHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC-eE----EEEcCCC
Confidence 345567889999999999999999999999999999999999999999999999999999998 44 22 3677 99
Q ss_pred CeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhccc
Q 007465 490 NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKH 545 (603)
Q Consensus 490 ~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~ 545 (603)
++|||.+++ .+ . +++++++|.++|+++.|++++|.+++...+
T Consensus 107 ~~fGe~~l~---~~-----~------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 148 (291)
T 2qcs_B 107 GSFGELALI---YG-----T------PRAATVKAKTNVKLWGIDRDSYRRILMGST 148 (291)
T ss_dssp CEECGGGGT---CC-----C------BCSSEEEESSCEEEEEEEHHHHHHHHHHHH
T ss_pred CccchHHHh---cC-----C------CCceEEEECCCEEEEEEEhHHHHHHHhhhH
Confidence 999999873 33 1 478899999999999999999999997333
No 45
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.40 E-value=1.4e-12 Score=140.11 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-
Q 007465 409 DIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY- 487 (603)
Q Consensus 409 ~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l- 487 (603)
+-..+...+.|+++++|++++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++...+|+.. .+..+
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~--~v~~l~ 214 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR--CVGNYD 214 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEE--EEEEEE
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEE--EEEEec
Confidence 334556678999999999999999999999999999999999999999999999999999999985444431 23566
Q ss_pred CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 488 DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 488 ~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
+|++|||.+++ .. . +|+++++|+++|+++.|++++|.+++.
T Consensus 215 ~G~~fGe~all---~~-----~------pr~atv~A~~d~~l~~i~r~~f~~ll~ 255 (416)
T 3tnp_B 215 NRGSFGELALM---YN-----T------PKAATITATSPGALWGLDRVTFRRIIV 255 (416)
T ss_dssp SCCEECGGGGT---SC-----C------CCSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred CCCEEeeHHHh---cC-----C------CcccEEEEccCeEEEEEeehhhhhhhh
Confidence 99999999884 33 2 488899999999999999999999997
No 46
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.38 E-value=3e-13 Score=134.63 Aligned_cols=161 Identities=11% Similarity=0.042 Sum_probs=122.1
Q ss_pred hcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechhh
Q 007465 420 KKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEELV 497 (603)
Q Consensus 420 ~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~l 497 (603)
.++..+..++++.++.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++. .+..+ +|++||+ +
T Consensus 12 ~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 12 GAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEK--LLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEE--EEEEECTTCEECC--C
T ss_pred hhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEEee--e
Confidence 3333348899999999999999999999999999999999999999999999974 333331 23556 9999999 3
Q ss_pred hhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchh
Q 007465 498 AWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAE 577 (603)
Q Consensus 498 ~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~ 577 (603)
+.+ . ++++++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+...+++
T Consensus 88 ---l~~-----------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l--~~~~~~~~~~~~~~~~ 150 (250)
T 3e6c_C 88 ---YPT-----------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKV--AYYARQVAEMNTYNPT 150 (250)
T ss_dssp ---SCC-----------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHH--HHHHHHHHHHTTSCHH
T ss_pred ---cCC-----------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCHH
Confidence 233 1 5679999999999999999999999855556666655554333 2235566667788999
Q ss_pred hhccCCCCc-----------ccccchhhhhhhhcc
Q 007465 578 TSTQEQVPP-----------TIRSKQLVETQIIAK 601 (603)
Q Consensus 578 er~~~~~~~-----------~~~~~~~~~~~~ia~ 601 (603)
+|+..++-. ...+...+++++||.
T Consensus 151 ~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~ 185 (250)
T 3e6c_C 151 IRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGE 185 (250)
T ss_dssp HHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHH
Confidence 998665421 123456788999985
No 47
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.37 E-value=5.1e-12 Score=128.32 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=102.1
Q ss_pred HHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC--CCcccCCCceec-CC
Q 007465 413 ELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE--GITAAPPNTDNY-DC 489 (603)
Q Consensus 413 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~--~~~~~~~~~~~l-~G 489 (603)
.....+++++++|.++++..+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++... |++.. .+..+ +|
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~--~~~~l~~G 230 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFV--EVGRLGPS 230 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEE--EEEEECTT
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccE--EEEEeCCC
Confidence 344567888999999999999999999999999999999999999999999999999998632 32221 23566 99
Q ss_pred CeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHH
Q 007465 490 NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQ 553 (603)
Q Consensus 490 ~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~ 553 (603)
++|||.+++ .+ . +|+++++|.++|+++.|++++|.+++...+.+.+..++
T Consensus 231 ~~fGe~~ll---~~-----~------~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~ 280 (291)
T 2qcs_B 231 DYFGEIALL---MN-----R------PKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQ 280 (291)
T ss_dssp CEECSGGGT---CC-----C------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHH
T ss_pred CEecHHHHc---CC-----C------CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHH
Confidence 999999883 33 2 47889999999999999999999999844443333333
No 48
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.34 E-value=1.8e-12 Score=128.43 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=115.3
Q ss_pred HHHHHHHHhhce---EEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechhhhhhhccc
Q 007465 430 KALLDDLCEFVK---PVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEELVAWAQDAC 504 (603)
Q Consensus 430 ~~~l~~L~~~l~---~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~ 504 (603)
+++++.|..... .+.|++|++|+++|+.++.+|||.+|.|+++.. .+|++. .+..+ +|++||+.+++ .+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~--~l~~~~~g~~~G~~~~~---~~- 103 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEI--TVALLRENSVFGVLSLL---TG- 103 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEE--EEEEECTTCEESCHHHH---SS-
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEEcchHHh---CC-
Confidence 678888888888 999999999999999999999999999999973 233331 23556 99999999873 33
Q ss_pred CcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCCC
Q 007465 505 TRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQV 584 (603)
Q Consensus 505 ~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~~ 584 (603)
.+ + .+..+++|+++|+++.+++++|.+++...+.+...+.+....+. ....++...+...++++|...++
T Consensus 104 ----~~-~---~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l--~~~~~~~~~l~~~~~~~Rla~~L 173 (243)
T 3la7_A 104 ----NK-S---DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRI--LQTEMMIETLAHRDMGSRLVSFL 173 (243)
T ss_dssp ----CC-S---BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHCSSHHHHHHHHH
T ss_pred ----CC-C---cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCHHHHHHHHH
Confidence 21 0 25579999999999999999999999855566665555444322 12244555666778888866543
Q ss_pred C-----------cccccchhhhhhhhcc
Q 007465 585 P-----------PTIRSKQLVETQIIAK 601 (603)
Q Consensus 585 ~-----------~~~~~~~~~~~~~ia~ 601 (603)
- ..+.+...+++++||.
T Consensus 174 ~~l~~~~g~~~~~~~~i~~~lt~~~lA~ 201 (243)
T 3la7_A 174 LILCRDFGVPCADGITIDLKLSHQAIAE 201 (243)
T ss_dssp HHHHHHHEEECSSSEEECSCCCHHHHHH
T ss_pred HHHHHHhCCCCCCCeEEeccCCHHHHHH
Confidence 2 2345566888999985
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.33 E-value=5.4e-12 Score=137.24 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=107.6
Q ss_pred chhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCccc
Q 007465 402 LPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAA 480 (603)
Q Consensus 402 Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~ 480 (603)
.|+..|.+-..+...+.++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+ +|+..
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 47888888888888999999999999999999999999999999999999999999999999999999999743 22210
Q ss_pred CCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 481 PPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 481 ~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
...+..+ +|++|||.+ + .. . +++++++|.++|+++.|++++|.+++.
T Consensus 107 ~~~~~~~~~G~~fGe~~-l---~~-----~------~~~~tv~A~~~~~l~~i~~~~~~~l~~ 154 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-L---DN-----T------PRHATIVTRESSELLRIEQEDFKALWE 154 (469)
T ss_dssp CEEEEEECTTCEECGGG-G---GT-----C------BCSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred ceEEEEccCCCCcchhh-h---CC-----C------CccceEEEccceeEEEEcHHHHHHHHH
Confidence 0123566 999999986 3 22 1 478899999999999999999999987
No 50
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.32 E-value=3e-12 Score=135.84 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=104.0
Q ss_pred HHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC--CCcccCCCceec-CC
Q 007465 413 ELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE--GITAAPPNTDNY-DC 489 (603)
Q Consensus 413 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~--~~~~~~~~~~~l-~G 489 (603)
..+..+++++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ |++. ..+..+ +|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~--~~v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEY--VEVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCC--CEEEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCce--EEEEEeCCC
Confidence 455678899999999999999999999999999999999999999999999999999999743 3322 124567 99
Q ss_pred CeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHH
Q 007465 490 NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQA 554 (603)
Q Consensus 490 ~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~ 554 (603)
++|||.+++ .. . +|+++++|.++|+++.|++++|.+++.-.+.+.+..++.
T Consensus 322 d~fGe~all---~~-----~------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~ 372 (381)
T 4din_B 322 DYFGEIALL---LN-----R------PRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQR 372 (381)
T ss_dssp CEECTTGGG---SC-----C------BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHH
T ss_pred CEechHHHh---CC-----C------CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHH
Confidence 999999883 33 2 488899999999999999999999998444444444433
No 51
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.32 E-value=2.9e-12 Score=136.01 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=100.2
Q ss_pred HHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CC
Q 007465 411 KSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DC 489 (603)
Q Consensus 411 ~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G 489 (603)
..+...+.|+++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +| +. +..+ +|
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-~~-~~----v~~l~~G 197 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-NG-EW----VTNISEG 197 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-TT-EE----EEEEESS
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-CC-eE----eeeCCCC
Confidence 334557889999999999999999999999999999999999999999999999999999997 33 32 3667 99
Q ss_pred CeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhccc
Q 007465 490 NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLIKH 545 (603)
Q Consensus 490 ~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~ 545 (603)
++|||.+++ .+ . +|+++++|.++|+++.|++++|.+++...+
T Consensus 198 ~~fGe~all---~~-----~------~r~atv~A~~~~~l~~i~~~~f~~ll~~~~ 239 (381)
T 4din_B 198 GSFGELALI---YG-----T------PRAATVKAKTDLKLWGIDRDSYRRILMGST 239 (381)
T ss_dssp CCBCGGGGT---SC-----C------BCSSEEEESSSCEEEEEEHHHHHHHHHHHH
T ss_pred CEEEchHHh---cC-----C------CcceEEEECCCEEEEEEchHHHHHhhhhhh
Confidence 999999883 33 1 478899999999999999999999998333
No 52
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.28 E-value=5.3e-12 Score=124.60 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=112.8
Q ss_pred hhchHHHHHHHHh--hceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeeechhhhhhh
Q 007465 426 GKWRKALLDDLCE--FVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICGEELVAWAQ 501 (603)
Q Consensus 426 ~~ls~~~l~~L~~--~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fGe~~l~~~l 501 (603)
++++++.++.++. .++.+.|++|++|+++||.++.+|||.+|.|+++.. .+|++. ...+ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~---~~~~~~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIM---NLQYYKGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEE---EEEEEESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEE---EEEEcCCCEecchhhh---
Confidence 4678899999885 599999999999999999999999999999999974 334431 1223 99999999873
Q ss_pred cccCcCCCCCCCCCCcceEEEEe-ceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhc
Q 007465 502 DACTRTDSSSSALPISTITIQAL-TKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETST 580 (603)
Q Consensus 502 ~~~~~~~~~~~~~~~r~~tv~Al-~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~ 580 (603)
.+ .+. .+..++.|+ ++|+++.|++++|.+++...+.+...+.+....+. ....++...+...++++|+
T Consensus 76 ~~-----~~~----~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~Rl 144 (238)
T 2bgc_A 76 DT-----ETS----VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQV--SYSLAKFNDFSINGKLGSI 144 (238)
T ss_dssp TT-----CCB----SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHTTHHHHHH
T ss_pred cC-----CCc----CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH--HHHHHHHHHHHccCHHHHH
Confidence 33 210 014577787 59999999999999999855556655555544322 2224555666777888887
Q ss_pred cCCCCc-----------ccccch-hhhhhhhcc
Q 007465 581 QEQVPP-----------TIRSKQ-LVETQIIAK 601 (603)
Q Consensus 581 ~~~~~~-----------~~~~~~-~~~~~~ia~ 601 (603)
..++.. ...+.. .+++++||.
T Consensus 145 a~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~ 177 (238)
T 2bgc_A 145 CSQLLILTYVYGKETPDGIKITLDNLTMQELGY 177 (238)
T ss_dssp HHHHHHHHHHHEEEETTEEEECCSCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCceEEEeccCCHHHHHH
Confidence 665521 112334 678888885
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.28 E-value=1.5e-11 Score=133.82 Aligned_cols=120 Identities=8% Similarity=0.073 Sum_probs=98.6
Q ss_pred HHHHHHhhcchhhhhchHHHHHHHHhhceE-EEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCC
Q 007465 413 ELCLELLKKVEEFGKWRKALLDDLCEFVKP-VVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCN 490 (603)
Q Consensus 413 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~ 490 (603)
+...+.++++|+|++++++.++.++..++. +.|++|++|+++||.++.+|||.+|.|+++..+.+ . +..+ +|+
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~-~----~~~l~~G~ 407 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-V----VCTLHEGD 407 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE-E----EEEEETTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe-e----EEEecCCC
Confidence 345678999999999999999999999985 48999999999999999999999999999974322 2 3677 999
Q ss_pred eeechhhhhhhcccCcCCCCCCCCCCcceEEEEec-eEEEEEeCHHhHHHHHhcccchhhhH
Q 007465 491 ICGEELVAWAQDACTRTDSSSSALPISTITIQALT-KVEAFILMADDLKNVLLIKHNRAAPF 551 (603)
Q Consensus 491 ~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~-~~~l~~L~~~df~~ll~~~~~~~~~~ 551 (603)
+|||.+++ .. . +++++++|++ +|+++.|++++|.+++...+.....+
T Consensus 408 ~fGe~~ll---~~-----~------~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 408 DFGKLALV---ND-----A------PRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp EECGGGGT---CC-----S------CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred EEEEehhh---cC-----C------CceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 99999883 33 1 4888999999 79999999999999998444333333
No 54
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.28 E-value=1.1e-11 Score=133.05 Aligned_cols=113 Identities=11% Similarity=0.133 Sum_probs=95.7
Q ss_pred HHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCC-------CcccCCCceec
Q 007465 415 CLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEG-------ITAAPPNTDNY 487 (603)
Q Consensus 415 ~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~-------~~~~~~~~~~l 487 (603)
+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+. ++.. .+..+
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~--~l~~l 342 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAV--EIARC 342 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------C--EEEEE
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCcee--EEEEe
Confidence 34567888999999999999999999999999999999999999999999999999997432 2321 24567
Q ss_pred -CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHhc
Q 007465 488 -DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLLI 543 (603)
Q Consensus 488 -~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~ 543 (603)
+|++|||.+++ .. . +|+++++|+++|+++.|++++|.+++.-
T Consensus 343 ~~G~~fGE~all---~~-----~------~r~~tv~A~~~~~ll~I~~~~f~~ll~~ 385 (416)
T 3tnp_B 343 FRGQYFGELALV---TN-----K------PRAASAHAIGTVKCLAMDVQAFERLLGP 385 (416)
T ss_dssp CTTCEESGGGGT---CC-----S------CCSSEEEEEEEEEEEEEEHHHHHHHHCC
T ss_pred CCCCEecHHHHh---CC-----C------CceeEEEEcCCeEEEEEEHHHHHHHhcc
Confidence 99999999883 33 2 4888999999999999999999999983
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.22 E-value=3.2e-11 Score=143.42 Aligned_cols=129 Identities=18% Similarity=0.141 Sum_probs=102.1
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-C
Q 007465 398 LVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-G 476 (603)
Q Consensus 398 ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~ 476 (603)
.|+.-| .-|.+=-.+.....|+++++|+++++..+.+||..|+.+.|++|++|+++||.++.+|+|.+|.|+|+..+ +
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 33433333445678999999999999999999999999999999999999999999999999999999732 1
Q ss_pred CcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHHHHHh
Q 007465 477 ITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNVLL 542 (603)
Q Consensus 477 ~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~~ll~ 542 (603)
+......+..+ +|+.||| +++ .. . +|+++++|.++|++++|++++|..++.
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all---~n-----~------pRtaTv~a~~~s~l~~l~r~~F~~i~~ 154 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SIL---DN-----T------PRHATIVTRESSELLRIEQEDFKALWE 154 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGG---GT-----C------CCSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred CCCCceeEEEecCCcchhh-hhc---cC-----C------CcceEEEeccceEEEEEEHHHHHHHHH
Confidence 11111123567 9999999 552 32 1 599999999999999999999999986
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.20 E-value=6e-11 Score=134.83 Aligned_cols=127 Identities=9% Similarity=0.098 Sum_probs=104.8
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHhhcchhhhhchHHHHHHHHhhce-EEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe
Q 007465 396 ENLVYNLPEDLGRDIKSELCLELLKKVEEFGKWRKALLDDLCEFVK-PVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS 474 (603)
Q Consensus 396 ~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~ 474 (603)
..+++..|. .|.+-..+...+.++++++|++++++.++.++..+. .+.|++|++|+++||.++.+|||.+|.|+++..
T Consensus 12 r~iL~k~p~-~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPPG-QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCGG-GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCChh-hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 455544444 454444555678899999999999999999999998 789999999999999999999999999999975
Q ss_pred CCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEec-eEEEEEeCHHhHHHHHh
Q 007465 475 EGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALT-KVEAFILMADDLKNVLL 542 (603)
Q Consensus 475 ~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~-~~~l~~L~~~df~~ll~ 542 (603)
|+ . .+..+ +|++|||.+++ .+ . +++++++|++ +|+++.|++++|.++++
T Consensus 91 -g~-~---il~~l~~Gd~fGe~al~---~~-----~------~~~~tv~A~edd~~ll~I~~~~f~~ll~ 141 (694)
T 3cf6_E 91 -GK-G---VVCTLHEGDDFGKLALV---ND-----A------PRAASIVLREDNCHFLRVDKEDFNRILR 141 (694)
T ss_dssp -TT-E---EEEEEETTCEECHHHHH---HT-----C------BCSSEEEECSSSEEEEEEEHHHHHHHTT
T ss_pred -CC-E---EEEEeCCCCEeehHHHh---CC-----C------CceEEEEEeeCceEEEEEeHHHHHHHHH
Confidence 32 2 24667 99999999873 32 1 4778999999 59999999999999998
No 57
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.19 E-value=2.6e-11 Score=105.81 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI-LEGM 356 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~-~~~~ 356 (603)
|..|+||++.|+|||||||++|.+..+++++++.+++|..++++.++.+++.++..+. .+++
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~~~ 112 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLV 112 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999999999999999999999999999999999999999877666 5554
No 58
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.17 E-value=4.9e-12 Score=108.47 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
|..|+||++.|+|||||||++|.+..+++++++.+++|..++++.+|.+++.+.+...
T Consensus 41 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 41 YPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp GGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999988776544
No 59
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.15 E-value=1.4e-10 Score=137.93 Aligned_cols=111 Identities=8% Similarity=0.064 Sum_probs=96.2
Q ss_pred HHHHHHhhcchhhhhchHHHHHHHHhhceEEE-ecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCC
Q 007465 413 ELCLELLKKVEEFGKWRKALLDDLCEFVKPVV-FMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCN 490 (603)
Q Consensus 413 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~-~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~ 490 (603)
+...+.++++|.|++++....+.|+..+.... +++|++|+++||.++.+|||.+|.|+|+....+. +..+ +|+
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 34567899999999999999999999998655 5789999999999999999999999999744333 3678 999
Q ss_pred eeechhhhhhhcccCcCCCCCCCCCCcceEEEEece-EEEEEeCHHhHHHHHh
Q 007465 491 ICGEELVAWAQDACTRTDSSSSALPISTITIQALTK-VEAFILMADDLKNVLL 542 (603)
Q Consensus 491 ~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~-~~l~~L~~~df~~ll~ 542 (603)
+|||.++ +.. . +|.+||+|.++ |++++++++||.+++.
T Consensus 408 ~FGElAL---L~~-----~------PR~aTV~a~~d~c~fl~i~k~df~~il~ 446 (999)
T 4f7z_A 408 DFGKLAL---VND-----A------PRAASIVLREDNCHFLRVDKEDGNRILR 446 (999)
T ss_dssp EECGGGG---TCS-----C------BCSSEEEESSSSEEEEEEEHHHHHHHHH
T ss_pred cccchhh---ccC-----C------CeeEEEEEecCceEEEEeeHHHHHHHHh
Confidence 9999998 343 2 59999999985 9999999999999997
No 60
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.14 E-value=7.8e-11 Score=96.46 Aligned_cols=53 Identities=13% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYT 347 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 347 (603)
|..|+||++.|+|||||||++|.|..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999875
No 61
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.14 E-value=2.1e-11 Score=116.40 Aligned_cols=135 Identities=11% Similarity=-0.017 Sum_probs=95.1
Q ss_pred EEecCCcEEEeCCCccCeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceE
Q 007465 443 VVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTIT 520 (603)
Q Consensus 443 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~t 520 (603)
+.|++|++|+++|++++.+|||.+|.|+++..+ +|++. .+..+ +|++||| +++ .+ . ++.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~G~~~Ge-~~~---~~-----~------~~~~~ 64 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLI--TLRHVLPGDYFGE-EAL---EG-----K------AYRYT 64 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEE--EEEEECTTCEECG-GGG---TC-----S------BCSSE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEech-hhh---CC-----C------CceeE
Confidence 579999999999999999999999999999742 33331 23556 9999999 873 33 1 47779
Q ss_pred EEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCCCCc----ccc------c
Q 007465 521 IQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVPP----TIR------S 590 (603)
Q Consensus 521 v~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~~~~----~~~------~ 590 (603)
++|+++|+++.+++++|. +.+...+.+....+. ....++...+...++++|...++-. .+. +
T Consensus 65 ~~A~~~~~v~~i~~~~~~------p~~~~~~~~~l~~~l--~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~ 136 (195)
T 3b02_A 65 AEAMTEAVVQGLEPRAMD------HEALHRVARNLARQM--RRVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGI 136 (195)
T ss_dssp EEESSSEEEEEECGGGCC------HHHHHHHHHHHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHTTSTTEEEETTEE
T ss_pred EEECCcEEEEEEcHHHcC------HHHHHHHHHHHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCee
Confidence 999999999999999998 333333433333221 1224455566778888987655322 222 4
Q ss_pred chhhhhhhhccc
Q 007465 591 KQLVETQIIAKE 602 (603)
Q Consensus 591 ~~~~~~~~ia~~ 602 (603)
...+++++||..
T Consensus 137 ~~~~t~~~lA~~ 148 (195)
T 3b02_A 137 YVTVSHEEIADA 148 (195)
T ss_dssp EEECCHHHHHHT
T ss_pred eccCCHHHHHHH
Confidence 557888999863
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.10 E-value=1.1e-10 Score=98.69 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSG 350 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 350 (603)
|..|+||++.|+|||||||++|.+..+++++++.+++|..++++.+|.++..++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56689999999999999999999999999999999999999999999999877643
No 63
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.09 E-value=7.2e-12 Score=117.02 Aligned_cols=58 Identities=14% Similarity=0.331 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.+...
T Consensus 68 ~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 125 (166)
T 3pjs_K 68 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQ 125 (166)
T ss_dssp TTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHH
T ss_pred HHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999999999999999999999999887666
No 64
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.02 E-value=5e-11 Score=114.31 Aligned_cols=139 Identities=13% Similarity=-0.015 Sum_probs=93.5
Q ss_pred HhhceEEEecCCcEEEeCCCcc--CeEEEEEeeEEEEEEeC-CCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCC
Q 007465 437 CEFVKPVVFMENSYIVPEGGSI--DKMVFVVQGNLLTYNSE-GITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSS 512 (603)
Q Consensus 437 ~~~l~~~~~~~ge~I~~~Gd~~--~~lyfI~~G~v~v~~~~-~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~ 512 (603)
...++.+.|++|++|+++||++ +.+|||.+|.|+++..+ +|++. .+..+ +|++||+ +++ .+ .
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~-~~l---~~-----~--- 67 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNAL--TLRLVRPGGFFGE-EAL---FG-----Q--- 67 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEE--EEEEECTTCEECT-HHH---HT-----C---
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEEecCCCEeee-hhc---CC-----C---
Confidence 4567889999999999999999 99999999999998742 33331 23556 9999999 663 22 1
Q ss_pred CCCCcceEEEEeceEEEEEeCHHhHHHHHhcccchhhhHHHHHHHHHHhhhhccccCCCcccchhhhccCCCCc------
Q 007465 513 ALPISTITIQALTKVEAFILMADDLKNVLLIKHNRAAPFIQAARFITIVMGAIKGTFLPSTRTAETSTQEQVPP------ 586 (603)
Q Consensus 513 ~~~~r~~tv~Al~~~~l~~L~~~df~~ll~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~~~~~a~er~~~~~~~------ 586 (603)
++..+++|+++|+++.+ +++|. +.+...+.+....+. ....++...+...++++|...++-.
T Consensus 68 ---~~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~ 135 (202)
T 2zcw_A 68 ---ERIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQGL--AEAYRRIERLATQRLKNRMAAALLELSETPL 135 (202)
T ss_dssp ---CBCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHHHH--HHHHHHHHHHHHCCHHHHHHHHHHHHTTSTT
T ss_pred ---CcceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 36779999999999999 98876 333333333322211 1124445556677888886654322
Q ss_pred ----ccccchhhhhhhhcc
Q 007465 587 ----TIRSKQLVETQIIAK 601 (603)
Q Consensus 587 ----~~~~~~~~~~~~ia~ 601 (603)
.+.+...+++++||.
T Consensus 136 ~~~~~~~~~~~~t~~~lA~ 154 (202)
T 2zcw_A 136 AHEEEGKVVLKATHDELAA 154 (202)
T ss_dssp EEEETTEEEEECCHHHHHH
T ss_pred CCCCCcEEccCCCHHHHHH
Confidence 234556788999985
No 65
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.88 E-value=2e-09 Score=109.38 Aligned_cols=60 Identities=10% Similarity=-0.146 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhccccccC-CCC-CCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 293 RRLYYCFRWGVQSLSSFGQG-LQT-STNPWE----NIFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 293 ~~Y~~slYwa~~tltTvGyG-di~-p~~~~E----~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
..+..|+||+++|+||+||| |+. |.+... ..+++++++.|.++.+..+|.+.+-+++...
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557999999999999999 985 654433 7888999999999999999999887765544
No 66
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.85 E-value=6e-09 Score=105.83 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSG 350 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 350 (603)
.|..|+||+++|+|||||||++|.|...++|+++.+++|..+++++++.+++.+.+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688899999999999999999999999999999999999999999999999987543
No 67
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.85 E-value=4e-09 Score=107.47 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTK 348 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 348 (603)
|..|+|||+.|||||||||++|.+...++++++.+++|.+++|+.+|.+.+.+.
T Consensus 83 ~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 83 FTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999999999999999999999999999998887664
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.71 E-value=1.6e-08 Score=103.89 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGS 351 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~ 351 (603)
.|..|+|||+.|||||||||+.|.+...++++++.+++|.+++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999998776543
No 69
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.68 E-value=1.7e-08 Score=104.05 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSG 350 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 350 (603)
|..|+|||+.|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+...
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999998877644
No 70
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.56 E-value=8.5e-08 Score=95.93 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTK 348 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 348 (603)
.|..|+||+++|+|||||||++|.|+..++++++.+++|..+++++++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999887543
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.54 E-value=3.7e-08 Score=100.02 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWEN------IFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~------~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
|+.|+||++.|+|||||||++|.+..++ +++++++++|+.+++++++.+++.+.....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999988886 599999999999999999999998877665
No 72
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.52 E-value=1.6e-07 Score=104.62 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGK-IQTYT 347 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~-i~~il 347 (603)
|..|+||++.|||||||||++|.|..+++++++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999998 55544
No 73
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.44 E-value=4.3e-07 Score=93.34 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhccccccCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTST--NPWENIFAICITACGVWLLVILVGKIQTYTKSG 350 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~--~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 350 (603)
+..++|||+.|+|||||||+.|+ ++..++++++.+++|.++.|+.+|-+.+-++..
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34589999999999999999996 688999999999999999999999887755543
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.43 E-value=1.2e-07 Score=94.97 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhccccccCCCCCCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007465 295 LYYCFRWGVQSLSSFGQGLQTSTNPW-------ENIFAICITACGVWLLVILVGKIQTYTKSG 350 (603)
Q Consensus 295 Y~~slYwa~~tltTvGyGdi~p~~~~-------E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 350 (603)
|+.|+||++.|+|||||||+.|.+.. -++++++.+++|..+++++++.++++++.-
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999998875 499999999999999999999999876543
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.37 E-value=7.8e-07 Score=91.52 Aligned_cols=56 Identities=13% Similarity=0.315 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhccccccCCCCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTS--TNPWENIFAICITACGVWLLVILVGKIQTYTKS 349 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p--~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 349 (603)
.+..++|||+.|+|||||||+.| .++..++++++.+++|.++.|+.+|-+.+=++.
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35669999999999999999986 489999999999999999999999987765544
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.31 E-value=3.6e-08 Score=102.45 Aligned_cols=56 Identities=13% Similarity=0.338 Sum_probs=49.0
Q ss_pred HHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 007465 297 YCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKSGSI 352 (603)
Q Consensus 297 ~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 352 (603)
.|+||++.|+|||||||++|.|..+++++++++++|.++++++++.+++.+.+...
T Consensus 48 ~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 48 VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp TTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred HHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999988776543
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.43 E-value=0.00027 Score=68.83 Aligned_cols=48 Identities=8% Similarity=0.053 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccccCCCcc--cccchhHHHHHhhcCh
Q 007465 98 DLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRK--RSWLLFLSDVLFILPI 148 (603)
Q Consensus 98 ~~~~~~~~~~~~~D~~f~~Di~l~f~t~~~~~~~V--d~k~~F~iDlls~lP~ 148 (603)
+....+..+|.++-++|.+|+++++... |+.. =+.+|-++|++.++|.
T Consensus 39 ~~~~~l~~~e~~~~~iF~~E~~lri~~~---~~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 39 LFLETIHLLDYGITIFFVIEILIRFIGE---KQKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc---CchhHHhcCCcHHHHHHHHHHH
Confidence 3455677899999999999999998532 1111 1127889998876643
No 78
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=96.39 E-value=0.0041 Score=55.02 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccccCCCcccccchhHHHHHhhcChhHHH
Q 007465 98 DLWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSWLLFLSDVLFILPIPQVL 152 (603)
Q Consensus 98 ~~~~~~~~~~~~~D~~f~~Di~l~f~t~~~~~~~Vd~k~~F~iDlls~lP~~~l~ 152 (603)
.....+..+|.++-++|.+|+++++..+-++..-. .|-++|+++++|+....
T Consensus 34 ~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~~y~---~~niiDllailp~~~~~ 85 (132)
T 1ors_C 34 EYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYV---KKTLYEIPALVPAGLLA 85 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTT---TTCGGGTGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999997542111100 37789999999987544
No 79
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=95.76 E-value=0.0066 Score=54.75 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccccCCCccccc---chhHHHHHhhcChhHHH
Q 007465 99 LWIAASACRSVFDLFYIIDNVFRLHTGISKSSRKRSW---LLFLSDVLFILPIPQVL 152 (603)
Q Consensus 99 ~~~~~~~~~~~~D~~f~~Di~l~f~t~~~~~~~Vd~k---~~F~iDlls~lP~~~l~ 152 (603)
....+..+|.++-++|.+|.++++..+- |++ .+-++|++|++|+....
T Consensus 50 ~~~~~~~id~~~~~iF~~Ey~lRl~~a~------~k~~f~~~~iiDllailP~~~~~ 100 (147)
T 2kyh_A 50 YLVRLYLVDLILVIILWADYAYRAYKSG------DPAGYVKKTLYEIPALVPAGLLA 100 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT------CHHHHHHHSTTTHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999997542 222 23578999999987543
No 80
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=66.77 E-value=7.1 Score=44.38 Aligned_cols=55 Identities=4% Similarity=0.055 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007465 294 RLYYCFRWGVQSLSSFGQGLQTSTNPWENIFAICITACGVWLLVILVGKIQTYTKS 349 (603)
Q Consensus 294 ~Y~~slYwa~~tltTvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 349 (603)
....++||++.++++.| ++..|.+...+++.+++++++.++.+..-+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35578999999999888 68899999999999999999999999999999999874
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=63.66 E-value=30 Score=32.66 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=50.0
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcc
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPIST 518 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~ 518 (603)
+....+.||+.+-..-.+.+.+.+|++|.+++... | +. ..+ +|+++= .+ + ...
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~-~-~~-----~~l~~Gd~~~--------~p------~-----~~~ 92 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE-N-NK-----KTISNGDFLE--------IT------A-----NHN 92 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES-S-CE-----EEEETTEEEE--------EC------S-----SCC
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC-C-EE-----EEECCCCEEE--------EC------C-----CCC
Confidence 45566899999987777889999999999999874 2 33 567 988752 22 1 133
Q ss_pred eEEEEeceEEEEEe
Q 007465 519 ITIQALTKVEAFIL 532 (603)
Q Consensus 519 ~tv~Al~~~~l~~L 532 (603)
..++|.+++.++.+
T Consensus 93 H~~~a~~~~~~l~i 106 (227)
T 3rns_A 93 YSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEESSSEEEEEE
T ss_pred EEEEECCCcEEEEE
Confidence 47889999999877
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=59.05 E-value=41 Score=27.39 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=28.9
Q ss_pred EecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 444 VFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 444 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
.+.+|..+-.-.....++++|++|.+++... + +. ..+ +|+.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~-~-~~-----~~l~~Gd~i 86 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFD-D-QK-----IDLVPEDVL 86 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEET-T-EE-----EEECTTCEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEEC-C-EE-----EEecCCCEE
Confidence 3566665543344567899999999998763 2 33 567 99875
No 83
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=55.15 E-value=57 Score=26.80 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=33.6
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....++||..+-.--...+++++|++|.+++... + +. ..+ +|+.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~-~-~~-----~~l~~Gd~i 84 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD-G-AQ-----RRLHQGDLL 84 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET-T-EE-----EEECTTEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC-C-EE-----EEECCCCEE
Confidence 34556788888766555667999999999998873 3 33 467 98876
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=53.40 E-value=78 Score=25.51 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=31.9
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....+.||..+-.--....++++|.+|.+.+... + +. ..+ +|+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~-~-~~-----~~l~~Gd~~ 88 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID-Q-ET-----YRVAEGQTI 88 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEET-T-EE-----EEEETTCEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC-C-EE-----EEECCCCEE
Confidence 34456778877644334467899999999998763 3 33 467 99876
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=49.73 E-value=86 Score=25.25 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=31.6
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....+.||..+-.--....++++|++|.+++.. ++ +. ..+ +|+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~~-~~-----~~l~~Gd~~ 82 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-DG-VI-----KVLTAGDSF 82 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-TT-EE-----EEECTTCEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-CC-EE-----EEeCCCCEE
Confidence 3445578887754333346789999999999886 23 33 467 99875
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=47.77 E-value=41 Score=28.22 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=31.3
Q ss_pred EEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 442 PVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 442 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
...+.||..+-.- ...+++++|++|.+++.. + ++. ..+ +||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~-~-g~~-----~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST-D-GET-----VTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE-T-TEE-----EEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE-C-CEE-----EEECCCCEEE
Confidence 3456777665433 367899999999999987 3 343 567 999763
No 87
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=44.60 E-value=71 Score=25.89 Aligned_cols=46 Identities=4% Similarity=0.006 Sum_probs=32.8
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
+-...+.||+.-.. ...+++++|++|.+++...++ +. ..+ +||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g-~~-----~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDG-KK-----YVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTC-CE-----EEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCC-CE-----EEECCCCEEE
Confidence 33556788876554 446899999999999987423 33 567 999763
No 88
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=37.05 E-value=65 Score=25.09 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=30.3
Q ss_pred eEEEecCCcEEEeCCCc-cCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 441 KPVVFMENSYIVPEGGS-IDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 441 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
....+.||..+-.--.. .+++++|++|.+.+... + +. ..+ +|+.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~-~-~~-----~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG-E-EE-----ALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET-T-EE-----EEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC-C-EE-----EEeCCCCEE
Confidence 34557788776433333 35799999999998763 2 33 466 98876
No 89
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=36.76 E-value=44 Score=27.64 Aligned_cols=47 Identities=13% Similarity=0.026 Sum_probs=31.4
Q ss_pred ceEEEecCCcEEEeCCCcc-CeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIVPEGGSI-DKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....+.||..+-.--... .++++|++|.+++...++ +. ..+ +|+.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~-~~-----~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNG-IV-----THLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTT-CE-----EEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCC-eE-----EEeCCCCEE
Confidence 4445678887765443443 688999999999875333 33 467 98875
No 90
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=36.07 E-value=59 Score=26.85 Aligned_cols=46 Identities=9% Similarity=-0.022 Sum_probs=32.4
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....+.||..+-.--....++++|++|.+++... + +. ..+ +|+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~-~-~~-----~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG-E-ET-----RVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEET-T-EE-----EEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEC-C-EE-----EEeCCCCEE
Confidence 44556788887754444567899999999998873 2 33 466 88875
No 91
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=35.57 E-value=58 Score=25.96 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=31.5
Q ss_pred ceEEEecCCcEEEeC--CCc-cCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIVPE--GGS-IDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~~~--Gd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....+.||..+-.. -.. ..++++|++|.+++... + +. ..+ +|+.+
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~-~-~~-----~~l~~Gd~~ 72 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD-G-HT-----QALQAGSLI 72 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET-T-EE-----EEECTTEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC-C-EE-----EEeCCCCEE
Confidence 344567888876543 334 67899999999998763 2 33 456 88865
No 92
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=31.62 E-value=1.5e+02 Score=27.60 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=34.4
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....+.||..+-.--...++++++++|.+++... + +. ..+ +|+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~-g-~~-----~~l~~Gd~i 201 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD-G-KP-----FIVKKGESA 201 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET-T-EE-----EEEETTEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC-C-EE-----EEECCCCEE
Confidence 45567899998765555667899999999998863 3 33 467 99875
No 93
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=30.58 E-value=45 Score=30.25 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=24.7
Q ss_pred ccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 457 SIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 457 ~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
..++++++++|.+.+...++++.. ...+ +|++|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 467999999999999886644221 1466 999873
No 94
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=30.47 E-value=41 Score=28.53 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=29.4
Q ss_pred EecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 444 VFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 444 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
...||..-....+ .+++++|++|.+.+..++| +. ..+ +||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g-~~-----~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDG-TV-----HAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECTTC-CE-----EEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEECCC-eE-----EEECCCCEEE
Confidence 3456665544332 3799999999999986444 43 567 999874
No 95
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=30.09 E-value=24 Score=28.05 Aligned_cols=48 Identities=17% Similarity=0.018 Sum_probs=29.9
Q ss_pred eEEEecCCcEEEeCCCcc-CeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 441 KPVVFMENSYIVPEGGSI-DKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 441 ~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
....++||...-.--... +++++|++|.+++...++.+. ..+ +|+.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~-----~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVT-----SQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEE-----EEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEE-----EEEcCCCEEE
Confidence 345567776542111233 359999999999987543133 467 998763
No 96
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=26.62 E-value=51 Score=29.72 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=33.2
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEe-CCCcccCCCceec-CCCeee
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNS-EGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~~~~~~~~~~~l-~G~~fG 493 (603)
+....+.||.....--..++++++|++|++++... .++.. ...+ +||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~----~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE----EEEECCCCEEE
Confidence 45566888887654433457999999999998763 22222 2566 988763
No 97
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=26.56 E-value=41 Score=30.53 Aligned_cols=86 Identities=9% Similarity=0.084 Sum_probs=49.7
Q ss_pred HHHHHHHhhceE----EEecCCcEEEe-CC----------CccCeEEEEEeeEEEEEEeCCC----cccCCCceec-CCC
Q 007465 431 ALLDDLCEFVKP----VVFMENSYIVP-EG----------GSIDKMVFVVQGNLLTYNSEGI----TAAPPNTDNY-DCN 490 (603)
Q Consensus 431 ~~l~~L~~~l~~----~~~~~ge~I~~-~G----------d~~~~lyfI~~G~v~v~~~~~~----~~~~~~~~~l-~G~ 490 (603)
+-+++....++| +....+++++. -| +..++++++++|.+.+...+++ +. ....+ +|+
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~---~dv~i~eGd 88 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKF---IDIIINEGD 88 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEE---EEEEECTTE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccce---eeEEECCCC
Confidence 345555666666 44434666542 22 2346999999999999886644 11 01456 999
Q ss_pred eeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeCHHhHH
Q 007465 491 ICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLK 538 (603)
Q Consensus 491 ~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~~~df~ 538 (603)
.|= +.+ . -..+-++-+++..+.+.++.-.
T Consensus 89 mfl-------lP~-----g-------vpHsP~r~~e~v~lviErkR~~ 117 (176)
T 1zvf_A 89 SYL-------LPG-----N-------VPHSPVRFADTVGIVVEQDRPG 117 (176)
T ss_dssp EEE-------ECT-----T-------CCEEEEECTTCEEEEEEECCCS
T ss_pred EEE-------cCC-----C-------CCcCCcccCCcEEEEEEecCCC
Confidence 873 111 1 1113344577777777665543
No 98
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=26.53 E-value=52 Score=27.74 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=29.3
Q ss_pred ecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 445 FMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 445 ~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
..||..-... +..++++.|++|.+.+..++| +. ..+ +||.+-
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~ddG-~~-----~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQADA-DP-----VKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEETTC-CC-----EEECTTEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEeCCC-eE-----EEECCCCEEE
Confidence 4566555544 334599999999999987654 33 567 999774
No 99
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=25.75 E-value=86 Score=27.84 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=30.1
Q ss_pred eEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 441 KPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 441 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
....+.||..+-.--....++++|++|.+++... + +. ..+ +|+++
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~-~-~~-----~~l~~Gd~i 104 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD-D-RV-----EPLTPLDCV 104 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET-T-EE-----EEECTTCEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC-C-EE-----EEECCCCEE
Confidence 3445667765533334567999999999998763 2 33 466 98876
No 100
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=24.48 E-value=1.6e+02 Score=22.72 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=32.2
Q ss_pred CeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeeechhhhhhhcccCcCCCCCCCCCCcceEEEEeceEEEEEeC
Q 007465 459 DKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILM 533 (603)
Q Consensus 459 ~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fGe~~l~~~l~~~~~~~~~~~~~~~r~~tv~Al~~~~l~~L~ 533 (603)
.+++++.+|.+.+... + +. ..+ +|+.+= +.+ + ....+.+.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~~-~-~~-----~~l~~Gd~~~-------ip~-------~-----~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFR-D-QN-----ITLQAGEMYV-------IPK-------G-----VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEECS-S-CE-----EEEETTEEEE-------ECT-------T-----CCBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEEC-C-EE-----EEEcCCCEEE-------ECC-------C-----CeEeeEcCCCCEEEEEE
Confidence 7899999999998763 2 22 467 988752 122 1 22255666788888765
No 101
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=24.02 E-value=79 Score=27.83 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=28.6
Q ss_pred EEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 442 PVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 442 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
...+.||...-.--....++++|++|.+++... + +. ..+ +|+++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~-g-~~-----~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVG-E-TI-----SDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEET-T-EE-----EEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEEC-C-EE-----EEeCCCCEE
Confidence 334566665433334456899999999998862 3 33 466 88875
No 102
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=23.65 E-value=58 Score=29.45 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=30.8
Q ss_pred ceEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....++||...-.--....+..+|++|++++...++ +. ..+ +||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~g-e~-----~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDG-AK-----RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGG-CE-----EEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCC-eE-----EEECCCCEE
Confidence 4445577776432222334578899999999987433 33 567 99987
No 103
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=23.63 E-value=1.1e+02 Score=25.12 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=29.3
Q ss_pred eEEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 441 KPVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 441 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
....+.||...-.--....++++|.+|.+++... + +. ..+ +|+++
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~-~-~~-----~~l~~Gd~~ 82 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRIN-D-ED-----FPVTKGDLI 82 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEET-T-EE-----EEEETTCEE
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEEC-C-EE-----EEECCCcEE
Confidence 3345667664332223456899999999998873 2 33 466 98876
No 104
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=23.03 E-value=1.1e+02 Score=25.78 Aligned_cols=44 Identities=7% Similarity=0.056 Sum_probs=29.6
Q ss_pred EEEecCCcEEEeCCCc-cCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 442 PVVFMENSYIVPEGGS-IDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 442 ~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
...++||..+-.--.. ..++++|++|.+++... ++. ..+ +|+.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GKD-----VPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TEE-----EEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CEE-----EEeCCCcEE
Confidence 4567888765332223 36899999999998763 233 467 88875
No 105
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.60 E-value=75 Score=28.35 Aligned_cols=44 Identities=7% Similarity=-0.036 Sum_probs=28.9
Q ss_pred EEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 442 PVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 442 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
...+.||..+-.--....++++|++|.+++... + +. ..+ +|+++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~-g-~~-----~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMVG-R-AV-----SAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEET-T-EE-----EEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEEC-C-EE-----EEeCCCCEE
Confidence 344567665533334456899999999998763 3 33 456 88865
No 106
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=22.44 E-value=66 Score=28.91 Aligned_cols=31 Identities=10% Similarity=-0.189 Sum_probs=23.2
Q ss_pred CccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 456 GSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 456 d~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
..+++++||++|.+++... ++. ..+ +|+.+=
T Consensus 108 h~gEE~~yVLeG~v~vtl~--g~~-----~~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTVC--KNK-----FLSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEET--TEE-----EEEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEEC--CEE-----EEEcCCCEEE
Confidence 3457899999999999873 333 567 998763
No 107
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=22.35 E-value=95 Score=25.17 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=27.2
Q ss_pred EEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCce-ec-CCCee
Q 007465 443 VVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTD-NY-DCNIC 492 (603)
Q Consensus 443 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~-~l-~G~~f 492 (603)
..+.||...-.--....++++|++|.+++...+ +. . .+ +|+.+
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~~-----~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLED--QE-----PHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETT--SC-----CEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECC--EE-----EEEeCCCCEE
Confidence 345566543211223568999999999988732 22 4 67 98875
No 108
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=22.18 E-value=1.2e+02 Score=28.54 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=23.4
Q ss_pred CccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 456 GSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 456 d~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
.+.+++|+|++|.++....++ +. ..+ +|+.+
T Consensus 150 Hp~EEiy~VLsG~~e~~v~~g-~~-----~~l~pGd~v 181 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHLRNA-PD-----LMLEPGQTR 181 (217)
T ss_dssp CSSEEEEEEEEECEEEEETTS-CC-----EEECTTCEE
T ss_pred CCCceEEEEEeCCEEEEECCC-CE-----EecCCCCEE
Confidence 457899999999999887534 32 466 88865
No 109
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=22.16 E-value=99 Score=25.65 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=28.9
Q ss_pred EEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 442 PVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 442 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
...+.||...-.--....++++|++|.+++... + +. ..+ +|+.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~-~-~~-----~~l~~Gd~i 96 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE-Q-GE-----ETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS-S-CE-----EEEETTEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC-C-EE-----EEECCCCEE
Confidence 344566665533333467999999999998763 2 22 456 88875
No 110
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=22.10 E-value=1.6e+02 Score=26.76 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=32.8
Q ss_pred ceEEEecCCcEEEeCCCc-cCeEEEEEeeEEEEEEeCC----CcccCCCceec-CCCeee
Q 007465 440 VKPVVFMENSYIVPEGGS-IDKMVFVVQGNLLTYNSEG----ITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 440 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~----~~~~~~~~~~l-~G~~fG 493 (603)
+....+.||...-.--.. .+++++|++|.+++...++ ++. ....+ +|+.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~---~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL---YSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE---EEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE---EEEEECCCCEEE
Confidence 445667888765432233 5799999999999876433 331 01466 998763
No 111
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=21.39 E-value=1.4e+02 Score=26.63 Aligned_cols=43 Identities=5% Similarity=0.105 Sum_probs=28.9
Q ss_pred EEecCCcEEEeCC--CccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 443 VVFMENSYIVPEG--GSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 443 ~~~~~ge~I~~~G--d~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
..+.||...-..- ....++++|++|.+++... ++. ..+ +||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~--~~~-----~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFD--EQW-----HELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEET--TEE-----EEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEEC--CEE-----EEeCCCCEE
Confidence 4467776654221 2346999999999998763 333 567 99976
No 112
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=20.02 E-value=88 Score=27.59 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=29.6
Q ss_pred ceEEEecCCcEEE--eCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCee
Q 007465 440 VKPVVFMENSYIV--PEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNIC 492 (603)
Q Consensus 440 l~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~f 492 (603)
+....+.||.... ..-+..+++++|++|.+++...+ +. ..+ +|+.+
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~--~~-----~~l~~GD~i 93 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ--GE-----HPMVPGDCA 93 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT--EE-----EEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC--EE-----EEeCCCCEE
Confidence 3445567777442 22222369999999999998732 33 466 88865
No 113
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=20.02 E-value=1e+02 Score=26.28 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=29.4
Q ss_pred EEEecCCcEEEeCCCccCeEEEEEeeEEEEEEeCCCcccCCCceec-CCCeee
Q 007465 442 PVVFMENSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNY-DCNICG 493 (603)
Q Consensus 442 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l-~G~~fG 493 (603)
...+.||..-.. ...+++++|++|.+++... ++. ..+ +||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~~-----~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GET-----MIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TEE-----EEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CEE-----EEECCCcEEE
Confidence 345677743222 2367999999999998873 344 567 999874
Done!