Your job contains 1 sequence.
>007467
MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSI
DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA
WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA
KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR
TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM
PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI
AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK
TPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVE
EVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKH
KDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE
EE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007467
(602 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2080625 - symbol:NAP57 "homologue of NAP57" sp... 1862 7.8e-194 2
UNIPROTKB|A7YWH5 - symbol:DKC1 "Uncharacterized protein" ... 1470 1.7e-152 2
MGI|MGI:1861727 - symbol:Dkc1 "dyskeratosis congenita 1, ... 1485 3.2e-152 1
UNIPROTKB|Q5ZJH9 - symbol:DKC1 "H/ACA ribonucleoprotein c... 1481 8.5e-152 1
RGD|621780 - symbol:Dkc1 "dyskeratosis congenita 1, dyske... 1480 1.1e-151 1
ASPGD|ASPL0000074111 - symbol:swoC species:162425 "Emeric... 1477 2.3e-151 1
UNIPROTKB|G4N1Q3 - symbol:MGG_07518 "Centromere/microtubu... 1475 3.7e-151 1
UNIPROTKB|E2R6Q8 - symbol:DKC1 "Uncharacterized protein" ... 1466 3.3e-150 1
UNIPROTKB|F6XRK3 - symbol:DKC1 "Uncharacterized protein" ... 1466 3.3e-150 1
UNIPROTKB|O60832 - symbol:DKC1 "H/ACA ribonucleoprotein c... 1465 4.2e-150 1
POMBASE|SPAC29A4.04c - symbol:cbf5 "pseudouridylate synth... 1461 1.1e-149 1
UNIPROTKB|F1RZ24 - symbol:DKC1 "Uncharacterized protein" ... 1459 1.8e-149 1
UNIPROTKB|F1P0Q8 - symbol:DKC1 "H/ACA ribonucleoprotein c... 1449 2.1e-148 1
ZFIN|ZDB-GENE-031118-120 - symbol:dkc1 "dyskeratosis cong... 1448 2.7e-148 1
SGD|S000004165 - symbol:CBF5 "Pseudouridine synthase cata... 1442 1.2e-147 1
DICTYBASE|DDB_G0281933 - symbol:nola4 "H/ACA RNP complex ... 1434 8.1e-147 1
CGD|CAL0001653 - symbol:orf19.1833 species:5476 "Candida ... 1429 2.8e-146 1
FB|FBgn0259937 - symbol:Nop60B "Nucleolar protein at 60B"... 1389 3.0e-144 2
WB|WBGene00010478 - symbol:K01G5.5 species:6239 "Caenorha... 1321 7.7e-135 1
GENEDB_PFALCIPARUM|PF14_0174 - symbol:PF14_0174 "small nu... 1296 3.4e-132 1
UNIPROTKB|Q8ILS0 - symbol:PF14_0174 "Pseudouridine syntha... 1296 3.4e-132 1
UNIPROTKB|E2RGN8 - symbol:E2RGN8 "Uncharacterized protein... 1243 1.4e-126 1
UNIPROTKB|C9IYT0 - symbol:DKC1 "H/ACA ribonucleoprotein c... 710 1.2e-87 2
UNIPROTKB|H7C2Q2 - symbol:DKC1 "H/ACA ribonucleoprotein c... 753 1.2e-74 1
UNIPROTKB|H7C0M1 - symbol:DKC1 "H/ACA ribonucleoprotein c... 748 4.0e-74 1
UNIPROTKB|H7C2Q9 - symbol:DKC1 "H/ACA ribonucleoprotein c... 476 2.7e-45 1
TIGR_CMR|CBU_1430 - symbol:CBU_1430 "tRNA pseudouridine s... 140 1.2e-15 2
UNIPROTKB|H7BZF2 - symbol:DKC1 "H/ACA ribonucleoprotein c... 196 6.5e-15 1
TIGR_CMR|ECH_0728 - symbol:ECH_0728 "tRNA pseudouridine s... 143 2.8e-13 2
UNIPROTKB|Q9KU78 - symbol:truB "tRNA pseudouridine syntha... 146 5.3e-13 2
TIGR_CMR|VC_0645 - symbol:VC_0645 "tRNA pseudouridine 55 ... 146 5.3e-13 2
TAIR|locus:2145708 - symbol:AT5G14460 species:3702 "Arabi... 148 2.7e-12 3
UNIPROTKB|P62190 - symbol:truB "tRNA pseudouridine syntha... 160 3.8e-12 3
TIGR_CMR|GSU_1591 - symbol:GSU_1591 "tRNA pseudouridine s... 131 1.7e-11 2
UNIPROTKB|Q97QJ3 - symbol:truB "tRNA pseudouridine syntha... 153 3.2e-11 2
TIGR_CMR|CHY_1763 - symbol:CHY_1763 "tRNA pseudouridine s... 147 4.7e-11 2
TIGR_CMR|CPS_2205 - symbol:CPS_2205 "tRNA pseudouridine s... 145 4.8e-10 2
UNIPROTKB|P60340 - symbol:truB "tRNA pseudouridine 55 syn... 143 8.3e-09 2
TIGR_CMR|NSE_0101 - symbol:NSE_0101 "tRNA pseudouridine s... 141 2.7e-07 1
TIGR_CMR|APH_0769 - symbol:APH_0769 "tRNA pseudouridine s... 118 4.0e-07 2
TIGR_CMR|DET_0981 - symbol:DET_0981 "tRNA pseudouridine s... 122 9.0e-07 2
UNIPROTKB|E1BEB7 - symbol:LOC530353 "Uncharacterized prot... 102 5.4e-06 2
MGI|MGI:1919383 - symbol:Trub1 "TruB pseudouridine (psi) ... 99 1.0e-05 2
TIGR_CMR|SPO_3837 - symbol:SPO_3837 "tRNA pseudouridine s... 130 1.2e-05 1
UNIPROTKB|Q8WWH5 - symbol:TRUB1 "Probable tRNA pseudourid... 94 8.2e-05 2
RGD|1308502 - symbol:Trub1 "TruB pseudouridine (psi) synt... 97 0.00037 2
>TAIR|locus:2080625 [details] [associations]
symbol:NAP57 "homologue of NAP57" species:3702
"Arabidopsis thaliana" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA;IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005829 GO:GO:0009506 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
InterPro:IPR015947 SUPFAM:SSF88697 EMBL:AL138655 GO:GO:0006364
EMBL:AF234984 EMBL:AY049247 EMBL:BT003810 EMBL:F20038
IPI:IPI00538845 PIR:T47775 RefSeq:NP_191274.1 UniGene:At.19647
ProteinModelPortal:Q9LD90 SMR:Q9LD90 IntAct:Q9LD90 STRING:Q9LD90
PaxDb:Q9LD90 PRIDE:Q9LD90 EnsemblPlants:AT3G57150.1 GeneID:824882
KEGG:ath:AT3G57150 GeneFarm:4939 TAIR:At3g57150 eggNOG:COG0130
HOGENOM:HOG000231224 InParanoid:Q9LD90 KO:K11131 OMA:TIHESKL
PhylomeDB:Q9LD90 ProtClustDB:CLSN2684542 Genevestigator:Q9LD90
GermOnline:AT3G57150 GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 Uniprot:Q9LD90
Length = 565
Score = 1862 (660.5 bits), Expect = 7.8e-194, Sum P(2) = 7.8e-194
Identities = 358/426 (84%), Positives = 388/426 (91%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKPQSFTP+IDTSQWPILLKNYDRLNVRTGHYTP+ G+SPLKRPL +YIRYG+INLD
Sbjct: 27 YMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLD 86
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 87 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 146
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
VARLH VPDVAKVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVV
Sbjct: 147 VARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVV 206
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RTMC MQELRRVRSGILGEN+NMVTMHDVMDAQ++YDN
Sbjct: 207 FWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDN 266
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
RDE+YLRRVIMPLE++LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI+VG EVVL
Sbjct: 267 SRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVL 326
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+GIAEMTT+VMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKKKLIA+
Sbjct: 327 MTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAD 386
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET--AG-VKKRKLDA 465
GKLDKHGK NEKTP EW+RNVVLP GGD+++A AAA E+ A+ E AG +KRK D
Sbjct: 387 GKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEARKRKHDD 446
Query: 466 SGDSPA 471
S DSPA
Sbjct: 447 SSDSPA 452
Score = 38 (18.4 bits), Expect = 7.8e-194, Sum P(2) = 7.8e-194
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 437 SVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
+V A +AAE++ +K+ KK+ D+ D
Sbjct: 532 AVDAEDESAAEKSEKKKKKKDKKKKNKDSEDD 563
>UNIPROTKB|A7YWH5 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005697
"telomerase holoenzyme complex" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
OMA:SHEPSAD CTD:1736 HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP
GO:GO:0005697 GO:GO:0003720 EMBL:DAAA02070028 EMBL:BC134581
IPI:IPI00705162 RefSeq:NP_001098865.1 UniGene:Bt.12564
STRING:A7YWH5 Ensembl:ENSBTAT00000017339 GeneID:525619
KEGG:bta:525619 InParanoid:A7YWH5 NextBio:20874200 Uniprot:A7YWH5
Length = 506
Score = 1470 (522.5 bits), Expect = 1.7e-152, Sum P(2) = 1.7e-152
Identities = 275/424 (64%), Positives = 339/424 (79%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G INLD
Sbjct: 36 FLIKPESRVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLD 95
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 96 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 155
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L +
Sbjct: 156 IVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGI 215
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG++ E D+MVTMHDV+DAQWLYDN
Sbjct: 216 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDN 275
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+V+
Sbjct: 276 HKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVV 335
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I +
Sbjct: 336 ITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQ 395
Query: 409 GKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
G LDKHGK + TP W + V V A A VAE +KR+ ++
Sbjct: 396 GLLDKHGKPTDSTPATWMQEYVDYSNSAKKDVPPKAVKATPVVAEVVKTPKRKRESESED 455
Query: 468 DSPA 471
SPA
Sbjct: 456 TSPA 459
Score = 39 (18.8 bits), Expect = 1.7e-152, Sum P(2) = 1.7e-152
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 445 AAEQTVAEKETAGVKKRKLDASGDSP 470
AA Q V +KE KK K A+ + P
Sbjct: 459 AAPQVV-KKEKKKKKKEKAKAAAEKP 483
>MGI|MGI:1861727 [details] [associations]
symbol:Dkc1 "dyskeratosis congenita 1, dyskerin"
species:10090 "Mus musculus" [GO:0000154 "rRNA modification"
evidence=ISA;TAS] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003720 "telomerase activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0004730
"pseudouridylate synthase activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005697 "telomerase holoenzyme complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IC;TAS] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0030519 "snoRNP binding"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 MGI:MGI:1861727 GO:GO:0005730 GO:GO:0003723
GO:GO:0015030 GO:GO:0030519 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
CTD:1736 HOVERGEN:HBG081442 GO:GO:0005697 GO:GO:0003720
EMBL:AJ250973 EMBL:AJ250972 EMBL:AJ250974 EMBL:AJ250975
EMBL:AJ250976 EMBL:AJ250978 EMBL:AJ250980 EMBL:AJ250981
EMBL:AJ250979 EMBL:AJ250977 EMBL:AK136418 EMBL:AL808110
IPI:IPI00113635 RefSeq:NP_001025478.1 UniGene:Mm.291062
ProteinModelPortal:Q9ESX5 SMR:Q9ESX5 STRING:Q9ESX5
PhosphoSite:Q9ESX5 PaxDb:Q9ESX5 PRIDE:Q9ESX5
Ensembl:ENSMUST00000033776 GeneID:245474 KEGG:mmu:245474
InParanoid:Q3UWE5 NextBio:386727 Bgee:Q9ESX5 Genevestigator:Q9ESX5
GermOnline:ENSMUSG00000031403 GO:GO:0004730 GO:GO:0000154
Uniprot:Q9ESX5
Length = 509
Score = 1485 (527.8 bits), Expect = 3.2e-152, P = 3.2e-152
Identities = 276/422 (65%), Positives = 342/422 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G INLD
Sbjct: 36 FLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLD 95
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 96 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 155
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L +
Sbjct: 156 IVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGI 215
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG++ E D+MVTMHDV+DAQWLYDN
Sbjct: 216 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDN 275
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IEV +E+V+
Sbjct: 276 HKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEIVV 335
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I +
Sbjct: 336 ITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMIKQ 395
Query: 409 GKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
G LDKHGK + TP W ++ + G + + + A A Q AE V KRK D+
Sbjct: 396 GLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTEAVQAPQLAAE--AVNVIKRKRDSES 453
Query: 468 DS 469
+S
Sbjct: 454 ES 455
>UNIPROTKB|Q5ZJH9 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9031 "Gallus gallus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0007004 "telomere maintenance via
telomerase" evidence=TAS] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0005654 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0007004 GO:GO:0006364
eggNOG:COG0130 HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
Reactome:REACT_115612 EMBL:AJ720455 IPI:IPI00572837
RefSeq:NP_001026286.1 UniGene:Gga.1015 ProteinModelPortal:Q5ZJH9
STRING:Q5ZJH9 PRIDE:Q5ZJH9 GeneID:422196 KEGG:gga:422196 CTD:1736
HOVERGEN:HBG081442 InParanoid:Q5ZJH9 OrthoDB:EOG4NS3BP
NextBio:20824864 Uniprot:Q5ZJH9
Length = 516
Score = 1481 (526.4 bits), Expect = 8.5e-152, P = 8.5e-152
Identities = 280/421 (66%), Positives = 344/421 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNV T HYTPLP+G +PLKR + DY+R G INLD
Sbjct: 34 FLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFINLD 93
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 94 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 153
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + A++ARA+E LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L +
Sbjct: 154 IVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQLRVRTIYESKLVEYDPERRLGI 213
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSGILGE DNMVTMHDV+DAQW YDN
Sbjct: 214 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVTMHDVLDAQWQYDN 273
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+D++YLRRVI+PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IE+ +E+V+
Sbjct: 274 NKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIELKQEIVV 333
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+ L IA MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I +
Sbjct: 334 ITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQK 393
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
G LDKHGK NE TP W + V +S AA Q V+E E A +KR+ ++ +
Sbjct: 394 GLLDKHGKPNECTPDSWKKEYV--DYRESSKKE-AAKVPQAVSEVERAPKRKRESESENE 450
Query: 469 S 469
+
Sbjct: 451 A 451
>RGD|621780 [details] [associations]
symbol:Dkc1 "dyskeratosis congenita 1, dyskerin" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 EMBL:Z34922 RGD:621780 GO:GO:0005730
GO:GO:0008283 GO:GO:0003723 GO:GO:0015030 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 CTD:1736 HOVERGEN:HBG081442
EMBL:BC099832 IPI:IPI00191460 PIR:A55163 RefSeq:NP_596910.1
UniGene:Rn.4223 ProteinModelPortal:P40615 IntAct:P40615
PhosphoSite:P40615 PRIDE:P40615 GeneID:170944 KEGG:rno:170944
NextBio:621465 Genevestigator:P40615 GO:GO:0005732 Uniprot:P40615
Length = 509
Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
Identities = 279/421 (66%), Positives = 343/421 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+DRLNVRT HYTP+P G +PLKR + +Y+R G INLD
Sbjct: 37 FLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLD 96
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 97 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 156
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
V RLH+ + A+++RALE LTGA+FQRPPLI+AVKRQLR+RTIYES+++EYD +R L V
Sbjct: 157 VVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERRLGV 216
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG++GE D+MVTMHDV+DAQ+LYD+
Sbjct: 217 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDH 276
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+RDE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IEV +EVV+
Sbjct: 277 HRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEVVV 336
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEAV + IA MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK+LI +
Sbjct: 337 ITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKQLIKQ 396
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
G LDKHG+ + TP W R+ V S A+ A A + A + KRK D+ D
Sbjct: 397 GLLDKHGRPTDGTPASWTRDYV-DYSDSSKKATAAEATPGPGVTADAASIVKRKRDSDSD 455
Query: 469 S 469
+
Sbjct: 456 A 456
>ASPGD|ASPL0000074111 [details] [associations]
symbol:swoC species:162425 "Emericella nidulans"
[GO:0030010 "establishment of cell polarity" evidence=IMP]
[GO:0051211 "anisotropic cell growth" evidence=IMP] [GO:0006897
"endocytosis" evidence=IMP] [GO:0048315 "conidium formation"
evidence=IMP] [GO:0004730 "pseudouridylate synthase activity"
evidence=ISA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031120 "snRNA
pseudouridine synthesis" evidence=IEA] [GO:0000495 "box H/ACA
snoRNA 3'-end processing" evidence=IEA] [GO:0031118 "rRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005737 GO:GO:0000775 GO:GO:0003677
GO:GO:0003723 EMBL:BN001303 GO:GO:0005874 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0030686 EMBL:AACD01000163 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 EMBL:U59148 EMBL:AY057454
RefSeq:XP_682120.1 ProteinModelPortal:O43100 STRING:O43100
EnsemblFungi:CADANIAT00006202 GeneID:2868403 KEGG:ani:AN8851.2
OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495 GO:GO:0031118
GO:GO:0031120 Uniprot:O43100
Length = 481
Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
Identities = 281/421 (66%), Positives = 337/421 (80%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
+ IKP++ +I+T WP+LLKNYD+L VRTGH+TP+P G SPLKR L YI G+INLD
Sbjct: 7 YTIKPEATASNINTEDWPLLLKNYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINLD 66
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 67 KPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 126
Query: 169 VARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 127 VIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHLG 186
Query: 228 VFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+C MQELRRVRSG + EN+ MVT+HDV+DAQWLYD
Sbjct: 187 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMVTLHDVLDAQWLYD 246
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+GEEVV
Sbjct: 247 NQRDESYLRKVIKPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIELGEEVV 306
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL +
Sbjct: 307 LMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLKS 366
Query: 408 EGKLDKHGKLNEKTPQEWARNV--VLPPGGDSVVASLAAAAEQTVAEKETAGVK--KRKL 463
GKLDK+G+ NE TP +W P GDS ++ A++ + KE ++ + K+
Sbjct: 367 SGKLDKYGRANEATPAKWKSEYKDYSAPDGDSSQQAVDVVAKEEASPKEEPSLEANESKM 426
Query: 464 D 464
D
Sbjct: 427 D 427
>UNIPROTKB|G4N1Q3 [details] [associations]
symbol:MGG_07518 "Centromere/microtubule-binding protein
cbf5" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
EMBL:CM001233 GO:GO:0003723 GO:GO:0043581 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0030686 KO:K11131 GO:GO:0009982
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 RefSeq:XP_003711432.1
ProteinModelPortal:G4N1Q3 EnsemblFungi:MGG_07518T0 GeneID:2683438
KEGG:mgr:MGG_07518 Uniprot:G4N1Q3
Length = 485
Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
Identities = 280/409 (68%), Positives = 334/409 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F IKP+ TP++DTS WP+LLKNYD+L++RTGH+TP+PNG +PL+R + YI G+INLD
Sbjct: 21 FSIKPEQVTPALDTSSWPLLLKNYDKLHIRTGHFTPIPNGSTPLRRDIKSYISSGVINLD 80
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 81 KPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 140
Query: 169 VARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDKVP + ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRHL
Sbjct: 141 VIRLHDKVPGGEPEFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRHLG 200
Query: 228 VFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+C MQELRRVRSG + E ++ T+HDV+DAQWL D
Sbjct: 201 VFWVSCEAGTYIRTLCVHLGLMLGVGAHMQELRRVRSGAMDETKDLHTLHDVLDAQWLMD 260
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR+VI PLE LLT+YKRLVVKD+ VNA+CYGAKLM+PGLLR+E DIE+ EEVV
Sbjct: 261 NTRDESYLRKVIQPLETLLTTYKRLVVKDSAVNAVCYGAKLMLPGLLRYEADIELHEEVV 320
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+GIA+M+T +++CDHGVVA++KR +M+RD YPR+WGLGP A KKKL A
Sbjct: 321 LMTTKGEAIAIGIAQMSTVEISSCDHGVVAKVKRCIMERDLYPRRWGLGPVAGEKKKLKA 380
Query: 408 EGKLDKHGKLNEKTPQEWARNV--VLPPGGDSVV--ASLAAAAEQTVAE 452
+GKLDK G+ NE TP W +N P D+ A AAAA ++ A+
Sbjct: 381 DGKLDKFGRPNEATPSRWTQNYKDYSAPAPDAAAPAADEAAAATESPAK 429
>UNIPROTKB|E2R6Q8 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
Ensembl:ENSCAFT00000031188 Uniprot:E2R6Q8
Length = 464
Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
Identities = 275/417 (65%), Positives = 339/417 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G INLD
Sbjct: 36 FLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLD 95
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 96 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 155
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L +
Sbjct: 156 IVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGI 215
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG++ E D+MVTMHDV+DAQWLYDN
Sbjct: 216 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDN 275
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV EE+V+
Sbjct: 276 HKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNEEIVV 335
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +I +
Sbjct: 336 ITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLMIKQ 395
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
G LDKHGK + TP W + V DS + A A T A++ T VK K+ A
Sbjct: 396 GLLDKHGKPTDSTPATWMQEYV--DYSDSAKKEVVAKAG-TAAQEVTEVVKSPKVAA 449
>UNIPROTKB|F6XRK3 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
CTD:1736 Ensembl:ENSCAFT00000031188 EMBL:AAEX03027096
RefSeq:XP_549382.2 GeneID:492263 KEGG:cfa:492263 Uniprot:F6XRK3
Length = 517
Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
Identities = 275/417 (65%), Positives = 339/417 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G INLD
Sbjct: 36 FLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLD 95
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 96 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 155
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L +
Sbjct: 156 IVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGI 215
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG++ E D+MVTMHDV+DAQWLYDN
Sbjct: 216 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDN 275
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV EE+V+
Sbjct: 276 HKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNEEIVV 335
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +I +
Sbjct: 336 ITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLMIKQ 395
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
G LDKHGK + TP W + V DS + A A T A++ T VK K+ A
Sbjct: 396 GLLDKHGKPTDSTPATWMQEYV--DYSDSAKKEVVAKAG-TAAQEVTEVVKSPKVAA 449
>UNIPROTKB|O60832 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IDA] [GO:0005697 "telomerase
holoenzyme complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008283 "cell proliferation" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007004 "telomere maintenance via telomerase"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0003723 GO:GO:0015030 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0007004 GO:GO:0006364 eggNOG:COG0130 HOGENOM:HOG000231224
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 MIM:300240 CTD:1736
HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP GO:GO:0005697 GO:GO:0003720
EMBL:AJ224481 EMBL:AJ010395 EMBL:AJ010396 EMBL:AF067008
EMBL:AF067023 EMBL:AF067009 EMBL:AF067010 EMBL:AF067011
EMBL:AF067012 EMBL:AF067013 EMBL:AF067014 EMBL:AF067015
EMBL:AF067016 EMBL:AF067017 EMBL:AF067018 EMBL:AF067019
EMBL:AF067020 EMBL:AF067021 EMBL:AF067022 EMBL:U59151 EMBL:JF279874
EMBL:AC109993 EMBL:BC009928 EMBL:BC010015 IPI:IPI00221394
RefSeq:NP_001354.1 UniGene:Hs.4747 ProteinModelPortal:O60832
SMR:O60832 IntAct:O60832 MINT:MINT-1379892 STRING:O60832
PhosphoSite:O60832 SWISS-2DPAGE:O60832 PaxDb:O60832
PeptideAtlas:O60832 PRIDE:O60832 DNASU:1736 Ensembl:ENST00000369550
GeneID:1736 KEGG:hsa:1736 UCSC:uc004fmm.3 GeneCards:GC0XP153984
HGNC:HGNC:2890 HPA:HPA000166 HPA:HPA000447 MIM:300126 MIM:305000
neXtProt:NX_O60832 Orphanet:1775 Orphanet:3322 PharmGKB:PA27344
PhylomeDB:O60832 ChiTaRS:DKC1 GenomeRNAi:1736 NextBio:7039
ArrayExpress:O60832 Bgee:O60832 CleanEx:HS_DKC1
Genevestigator:O60832 GermOnline:ENSG00000130826 Uniprot:O60832
Length = 514
Score = 1465 (520.8 bits), Expect = 4.2e-150, P = 4.2e-150
Identities = 272/421 (64%), Positives = 337/421 (80%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G INLD
Sbjct: 36 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLD 95
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 96 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 155
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L +
Sbjct: 156 IVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGI 215
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG++ E D+MVTMHDV+DAQWLYDN
Sbjct: 216 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDN 275
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+V+
Sbjct: 276 HKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVV 335
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I +
Sbjct: 336 ITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQ 395
Query: 409 GKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
G LDKHGK + TP W + V V + A Q VAE +KR+ ++
Sbjct: 396 GLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESES 455
Query: 468 D 468
D
Sbjct: 456 D 456
>POMBASE|SPAC29A4.04c [details] [associations]
symbol:cbf5 "pseudouridylate synthase Cbf5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000495 "box H/ACA
snoRNA 3'-end processing" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006399 "tRNA metabolic process" evidence=NAS] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0019843 "rRNA
binding" evidence=ISO] [GO:0031118 "rRNA pseudouridine synthesis"
evidence=ISO] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=ISO] [GO:0031429 "box H/ACA snoRNP complex" evidence=ISO]
[GO:0034513 "box H/ACA snoRNA binding" evidence=IC]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 PomBase:SPAC29A4.04c GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0019843
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 PIR:T38485 RefSeq:NP_594878.1
ProteinModelPortal:O14007 STRING:O14007 EnsemblFungi:SPAC29A4.04c.1
GeneID:2542481 KEGG:spo:SPAC29A4.04c OMA:PTEWLRN NextBio:20803536
GO:GO:0034513 GO:GO:0006399 Uniprot:O14007
Length = 474
Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
Identities = 280/421 (66%), Positives = 340/421 (80%)
Query: 49 FIIKPQSFTPS-IDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
F+IKP++ + S IDT++WP+LLKN+D+L VRTGHYTP+P G +PLKRP+ +Y+ G+INL
Sbjct: 10 FMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINL 69
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+K+ILRVEKTGHSGTLDPKVTG LI+C DRATRLVKSQQ AGKEYV
Sbjct: 70 DKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYV 129
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLHD V VA A+E LTGA+FQRPPLISAVKRQLRIR+IYESKL+E+D +R+L
Sbjct: 130 CVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNLA 189
Query: 228 VFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW SCEAGTY+RT+C MQELRRVRSG L END++VTMHDV+DAQW+YD
Sbjct: 190 VFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIYD 249
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL YKR+VVKD+ VNAICYGAKLMIPGLLR+E IEV EE+V
Sbjct: 250 NTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIV 309
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP++ KK L
Sbjct: 310 LITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLKK 369
Query: 408 EGKLDKHGKLNEKTPQEWARNVV--LPPGGD-SVVASLAAAAEQTVAEKETAGV---KKR 461
EGKLDK+G+ NE TP +W+++ + P + + A + A A TV E E GV KKR
Sbjct: 370 EGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAAPTV-EAEVNGVEDSKKR 428
Query: 462 K 462
K
Sbjct: 429 K 429
>UNIPROTKB|F1RZ24 [details] [associations]
symbol:DKC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005697
"telomerase holoenzyme complex" evidence=IEA] [GO:0003720
"telomerase activity" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
OMA:SHEPSAD GO:GO:0005697 GO:GO:0003720 EMBL:CU914693
Ensembl:ENSSSCT00000014017 Ensembl:ENSSSCT00000033158
Uniprot:F1RZ24
Length = 521
Score = 1459 (518.7 bits), Expect = 1.8e-149, P = 1.8e-149
Identities = 275/434 (63%), Positives = 343/434 (79%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G INLD
Sbjct: 37 FLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFINLD 96
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 97 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 156
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RT+YESK++E+D +R L +
Sbjct: 157 IVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTVYESKMIEFDPERRLGI 216
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG++ E D+MVTMHDV+DAQWLYDN
Sbjct: 217 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDN 276
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+V+
Sbjct: 277 HKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVV 336
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+ + +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS K+ +I +
Sbjct: 337 ITTKGEAICMAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKRLMIKQ 396
Query: 409 GKLDKHGKLNEKTPQEWARNVV--LPPGGDSVVASL---------AAAAEQTVAEKETAG 457
G LDKHGK + TP W ++ V P A AA A Q VAE
Sbjct: 397 GLLDKHGKPTDSTPAAWTQDYVDYSDPAKKEAAAKAVKAPPAVAEAAKAPQLVAEAAKTP 456
Query: 458 VKKRKLDASGDSPA 471
+KR+ ++ SPA
Sbjct: 457 KRKRESESDETSPA 470
>UNIPROTKB|F1P0Q8 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9031 "Gallus gallus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003720 "telomerase activity"
evidence=IEA] [GO:0005697 "telomerase holoenzyme complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697 OMA:TIHESKL
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
GeneTree:ENSGT00510000047092 IPI:IPI00572837 GO:GO:0005697
GO:GO:0003720 EMBL:AADN02013221 Ensembl:ENSGALT00000008105
Uniprot:F1P0Q8
Length = 470
Score = 1449 (515.1 bits), Expect = 2.1e-148, P = 2.1e-148
Identities = 274/408 (67%), Positives = 335/408 (82%)
Query: 62 TSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAW 121
TSQWP+LLKN+D+LNV T HYTPLP+G +PLKR + DY+R G INLDKP+NPSSHEVVAW
Sbjct: 1 TSQWPLLLKNFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAW 60
Query: 122 IKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAK 181
I+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+ + A+
Sbjct: 61 IRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQ 120
Query: 182 VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRT 241
+ARA+E LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L +FW+SCEAGTY+RT
Sbjct: 121 LARAIETLTGALFQRPPLIAAVKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRT 180
Query: 242 MCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+C MQELRRVRSGILGE DNMVTMHDV+DAQW YDN +D++YLRRVI+P
Sbjct: 181 LCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILP 240
Query: 302 LEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
LE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEA+ L IA
Sbjct: 241 LEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIELNQEIVVITTKGEAICLAIA 300
Query: 362 EMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKT 421
MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGK NE T
Sbjct: 301 LMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECT 360
Query: 422 PQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDS 469
P W + V +S AA Q V+E E A +KR+ ++ ++
Sbjct: 361 PDSWKKEYV--DYRESSKKE-AAKVPQAVSEVERAPKRKRESESENEA 405
>ZFIN|ZDB-GENE-031118-120 [details] [associations]
symbol:dkc1 "dyskeratosis congenita 1, dyskerin"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0060216 "definitive hemopoiesis"
evidence=IGI;IMP] [GO:0006364 "rRNA processing" evidence=IMP]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 ZFIN:ZDB-GENE-031118-120
GO:GO:0003723 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 HOGENOM:HOG000231224 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GO:GO:0060216
HOVERGEN:HBG081442 OrthoDB:EOG4NS3BP EMBL:BC100010 IPI:IPI00654498
UniGene:Dr.33715 ProteinModelPortal:Q498Z9 STRING:Q498Z9
InParanoid:Q498Z9 ArrayExpress:Q498Z9 Uniprot:Q498Z9
Length = 507
Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
Identities = 271/416 (65%), Positives = 336/416 (80%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S S+DTSQWP+LLKN+D+LN+RT HYTPLP+G +PLKR + DY+R G INLD
Sbjct: 31 FLIKPESKVASLDTSQWPLLLKNFDKLNIRTAHYTPLPHGSNPLKRGIHDYVRSGFINLD 90
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVC++RATRLVKSQQ AGKEYV
Sbjct: 91 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYVG 150
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + + ++ARALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L +
Sbjct: 151 IVRLHNALENEHQLARALECLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRLGI 210
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG+LGE DN+VTMHDV+DAQW +D+
Sbjct: 211 FWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFDH 270
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE YLRRVI PLE LL S+K +V+KD+ VNAICYGAK+M+PG+LR+E+ IEV +++V+
Sbjct: 271 NKDETYLRRVIFPLEKLLISHKGIVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQDIVV 330
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+ +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I +
Sbjct: 331 ITTKGEAICTAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQK 390
Query: 409 GKLDKHGKLNEKTPQEWARNVV------LPPGGDSVVASLAAAAEQTVAEKETAGV 458
G LDKHGK N TP +W V + GG+ AS +++ +E E A V
Sbjct: 391 GLLDKHGKPNNSTPSDWKEGYVDYSTTKVKKGGE---ASAKRKRDESGSEGEAAAV 443
>SGD|S000004165 [details] [associations]
symbol:CBF5 "Pseudouridine synthase catalytic subunit of box
H/ACA snoRNPs" species:4932 "Saccharomyces cerevisiae" [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IC] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0000495 "box H/ACA snoRNA 3'-end processing"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IDA]
[GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0031429 "box H/ACA snoRNP complex"
evidence=IPI] [GO:0031118 "rRNA pseudouridine synthesis"
evidence=IMP] [GO:0006364 "rRNA processing" evidence=IEA;IMP]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP;IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002478 InterPro:IPR002501 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 SGD:S000004165 GO:GO:0005737
GO:GO:0000775 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:BK006945 GO:GO:0003723 GO:GO:0005874 EMBL:U17246
InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0030686 eggNOG:COG0130
HOGENOM:HOG000231224 KO:K11131 GO:GO:0009982 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451 OrthoDB:EOG4J6W08 GO:GO:0031429 GO:GO:0000495
GO:GO:0031118 GO:GO:0031120 EMBL:L12351 PIR:S41853
RefSeq:NP_013276.1 PDB:3U28 PDB:3UAI PDB:3ZV0 PDBsum:3U28
PDBsum:3UAI PDBsum:3ZV0 ProteinModelPortal:P33322 SMR:P33322
DIP:DIP-4472N IntAct:P33322 MINT:MINT-501145 STRING:P33322
PaxDb:P33322 PeptideAtlas:P33322 EnsemblFungi:YLR175W GeneID:850872
KEGG:sce:YLR175W CYGD:YLR175w GeneTree:ENSGT00510000047092
OMA:SHEPSAD NextBio:967209 Genevestigator:P33322 GermOnline:YLR175W
Uniprot:P33322
Length = 483
Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
Identities = 272/415 (65%), Positives = 331/415 (79%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+INLD
Sbjct: 6 FVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLD 65
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 66 KPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 125
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L V
Sbjct: 126 IVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNLGV 185
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW SCEAGTY+RT+C MQELRRVRSG L ENDNMVT+HDVMDAQW+YDN
Sbjct: 186 FWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDN 245
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+VL
Sbjct: 246 TRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVL 305
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++ A+
Sbjct: 306 ITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMKAD 365
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
GKLDK+G++NE TP++W + V P D+ S +++ E E+E K+ L
Sbjct: 366 GKLDKYGRVNENTPEQWKKEYV-PL--DNAEQSTSSSQETKETEEEPKKAKEDSL 417
>DICTYBASE|DDB_G0281933 [details] [associations]
symbol:nola4 "H/ACA RNP complex subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0007004 "telomere maintenance via
telomerase" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0005697 "telomerase holoenzyme complex" evidence=ISS]
[GO:0003720 "telomerase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 dictyBase:DDB_G0281933 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0008283 GO:GO:0003723
EMBL:AAFI02000043 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0007004
GO:GO:0006364 eggNOG:COG0130 KO:K11131 OMA:TIHESKL GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451
RefSeq:XP_640508.1 HSSP:Q57612 ProteinModelPortal:Q54T81
IntAct:Q54T81 STRING:Q54T81 PRIDE:Q54T81 EnsemblProtists:DDB0233679
GeneID:8623323 KEGG:ddi:DDB_G0281933 ProtClustDB:CLSZ2429005
GO:GO:0005697 GO:GO:0003720 Uniprot:Q54T81
Length = 540
Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
Identities = 268/422 (63%), Positives = 335/422 (79%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKP+ TP +DTS+WP+LLKNYD+L+VRTGHYTP+PNG+SPLKRP+ +Y++YGIINLDK
Sbjct: 22 VIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHYTPIPNGHSPLKRPIKEYVKYGIINLDK 80
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGKEY+ +
Sbjct: 81 PSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGI 140
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLH + ++++A++ LTGA+FQRPP SAVK++LR+RTI+ SKLLE+D +R+L +
Sbjct: 141 VRLHGAIEGTTELSKAVDTLTGALFQRPPQKSAVKKRLRVRTIHNSKLLEFDPERNLGLI 200
Query: 230 WISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+ CEAGTY+RT+C MQELRRVRSGI+ E VTMHDV DAQ+ YDN
Sbjct: 201 WVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVTMHDVKDAQYEYDNS 260
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+DE+YLRRVI PLE +LT+YKR+VVKD+ +NAICYGAKLMIPGLLR+E DIE EEVVL+
Sbjct: 261 KDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEVVLI 320
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+GIA+MTTA MATCDHGVVA IKRV+MDRD YP +WGLGP+A +KK++I +G
Sbjct: 321 TTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMIKDG 380
Query: 410 KLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTV--AEKETAGVK-KRKLDAS 466
KLDK GK NEKTP +W G + + + V +K TA V K ++++S
Sbjct: 381 KLDKFGKPNEKTPSDWTNTYTYYTGQVATTTTTSPVESMNVDTPKKATASVAVKAEVESS 440
Query: 467 GD 468
D
Sbjct: 441 ED 442
>CGD|CAL0001653 [details] [associations]
symbol:orf19.1833 species:5476 "Candida albicans" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031429 "box H/ACA snoRNP complex" evidence=IEA] [GO:0031120
"snRNA pseudouridine synthesis" evidence=IEA] [GO:0000495 "box
H/ACA snoRNA 3'-end processing" evidence=IEA] [GO:0031118 "rRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004521 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890
SMART:SM00359 CGD:CAL0001653 GO:GO:0005737 GO:GO:0000775
GO:GO:0005730 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GO:GO:0005874 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 EMBL:U59149 EMBL:AACQ01000244
EMBL:AACQ01000240 RefSeq:XP_710717.1 RefSeq:XP_710755.1
ProteinModelPortal:O43101 STRING:O43101 GeneID:3647637
GeneID:3647682 KEGG:cal:CaO19.1833 KEGG:cal:CaO19.9391
Uniprot:O43101
Length = 479
Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
Identities = 259/380 (68%), Positives = 323/380 (85%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
+IIKP+S +PS DTSQWP+LLKNYD+L VR+GHYTP+P G +PL R + Y+ G+INLD
Sbjct: 7 YIIKPESVSPSNDTSQWPLLLKNYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSGVINLD 66
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 67 KPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 126
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+++ D ++ RALE LTGA+FQRPPLISAVKRQLR+RT+Y+SKL+E+D R L V
Sbjct: 127 IVRLHEQLKDDKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNKRGLGV 186
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW SCEAGTY+RT+C MQELRRVRSG + E+DN+VT+HDV+DAQ++YDN
Sbjct: 187 FWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHDVLDAQYVYDN 246
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+ +EVVL
Sbjct: 247 TRDESYLRKIIQPLESLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEEGIELYDEVVL 306
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+GIA+M+T + +CDHG+VA++KR +M+RDTYPR+WGLGP A KK++ A+
Sbjct: 307 MTTKGEAIAIGIAQMSTVDLQSCDHGIVAKVKRCIMERDTYPRRWGLGPIAQKKKQMKAD 366
Query: 409 GKLDKHGKLNEKTPQEWARN 428
GKLDK+G++NE TP+ W ++
Sbjct: 367 GKLDKYGRVNENTPENWKKD 386
>FB|FBgn0259937 [details] [associations]
symbol:Nop60B "Nucleolar protein at 60B" species:7227
"Drosophila melanogaster" [GO:0005730 "nucleolus"
evidence=ISS;NAS;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IMP] [GO:0006364 "rRNA processing" evidence=NAS;IMP]
[GO:0001522 "pseudouridine synthesis" evidence=IMP] [GO:0005634
"nucleus" evidence=NAS] [GO:0004730 "pseudouridylate synthase
activity" evidence=ISS] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0035220 "wing
disc development" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 EMBL:AE013599 GO:GO:0005730
GO:GO:0022008 GO:GO:0003723 GO:GO:0035220 GO:GO:0030529
GO:GO:0007281 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0006364
eggNOG:COG0130 KO:K11131 GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 GeneTree:ENSGT00510000047092 EMBL:AF017230
EMBL:AF089837 EMBL:AF097634 EMBL:DQ841550 EMBL:DQ857345
EMBL:DQ857346 EMBL:AY089408 EMBL:BT030987 RefSeq:NP_001014547.1
RefSeq:NP_001163286.1 RefSeq:NP_001163287.1 RefSeq:NP_001163288.1
RefSeq:NP_001163289.1 RefSeq:NP_525120.1 UniGene:Dm.1944
ProteinModelPortal:O44081 SMR:O44081 DIP:DIP-20128N IntAct:O44081
MINT:MINT-1030866 STRING:O44081 PaxDb:O44081 PRIDE:O44081
EnsemblMetazoa:FBtr0072258 EnsemblMetazoa:FBtr0100213
EnsemblMetazoa:FBtr0300227 EnsemblMetazoa:FBtr0300228
EnsemblMetazoa:FBtr0300229 EnsemblMetazoa:FBtr0300861 GeneID:37873
KEGG:dme:Dmel_CG3333 CTD:37873 FlyBase:FBgn0259937
InParanoid:O44081 OMA:LKSEWIV OrthoDB:EOG4WSTRZ PhylomeDB:O44081
ChiTaRS:Nop60B GenomeRNAi:37873 NextBio:805804 Bgee:O44081
GermOnline:CG3333 Uniprot:O44081
Length = 508
Score = 1389 (494.0 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
Identities = 256/382 (67%), Positives = 313/382 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R + +Y++ G INLD
Sbjct: 34 FQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLD 93
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 94 KPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVA 153
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+YD R++ V
Sbjct: 154 IFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETRNMGV 213
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAG+Y+RTMC M ELRRVRSGI E D MVTMHDV+DA WLY+N
Sbjct: 214 FWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYEN 273
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR+E+ IE+ +E+V+
Sbjct: 274 HKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLRYEDGIEIDQEIVI 333
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK LIA
Sbjct: 334 CTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGLGPKASAKKALIAA 393
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
GKLDK G+ NE TP+EW V
Sbjct: 394 GKLDKFGRPNENTPKEWLTGYV 415
Score = 42 (19.8 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 417 LNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
++E+TP + + GD A AA E EKE KK+ D D
Sbjct: 454 VSEETPSKDKKKKKKKHKGDEE-APEAAEEEAEPVEKEKKKKKKKDKDRDRD 504
>WB|WBGene00010478 [details] [associations]
symbol:K01G5.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004521 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0000003 GO:GO:0003723 GO:GO:0030529 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0006364 eggNOG:COG0130 HOGENOM:HOG000231224
KO:K11131 OMA:TIHESKL GO:GO:0009982 GO:GO:0001522
InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120
TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 GeneTree:ENSGT00510000047092
EMBL:Z92803 PIR:T23199 RefSeq:NP_499370.1 ProteinModelPortal:O17919
SMR:O17919 DIP:DIP-25862N IntAct:O17919 MINT:MINT-1040832
STRING:O17919 PaxDb:O17919 EnsemblMetazoa:K01G5.5.1
EnsemblMetazoa:K01G5.5.2 GeneID:176504 KEGG:cel:CELE_K01G5.5
UCSC:K01G5.5.1 CTD:176504 WormBase:K01G5.5 InParanoid:O17919
NextBio:892856 Uniprot:O17919
Length = 445
Score = 1321 (470.1 bits), Expect = 7.7e-135, P = 7.7e-135
Identities = 251/421 (59%), Positives = 317/421 (75%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F + + T +D SQWP+LLKNYD+LNVRT HYTP G SPLKR + +YI G NLD
Sbjct: 24 FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLD 83
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL KSQQGAGKEY+C
Sbjct: 84 KPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYIC 143
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH++V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+YE+K +EYD + + +
Sbjct: 144 IFKLHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGI 203
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
F CE+GTYVRT+C MQELRR RSGI EN+NMVTMHDV+DAQ+L D
Sbjct: 204 FNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYLLDT 263
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+Y+R ++ PLE LLT +KR+VVKD+ +NAICYGAK++IPG+LR+++DIEVG+E+V+
Sbjct: 264 QKDESYMRHIVRPLEALLTQHKRVVVKDSCINAICYGAKILIPGILRYDDDIEVGKEIVI 323
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
M+TKGEA+ + IA+M T+ +A+ DHGVVA+ KRV+M+RD Y RKWGLGP AS KK+++ +
Sbjct: 324 MSTKGEAICIAIAQMNTSTIASVDHGVVAKSKRVIMERDVYGRKWGLGPVASKKKQMVKD 383
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
G LDK GK N+ TP+ WA+ V V E+ A K+ + KK K S D
Sbjct: 384 GLLDKFGKPNDTTPKSWAKEYVQTSTKKEVKKEETPDEEEEEAPKKKS--KKSKKQESSD 441
Query: 469 S 469
S
Sbjct: 442 S 442
>GENEDB_PFALCIPARUM|PF14_0174 [details] [associations]
symbol:PF14_0174 "small nucleolar
ribonucleoprotein, snoRNP, putative" species:5833 "Plasmodium
falciparum" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR002478
InterPro:IPR002501 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01472 Pfam:PF01509 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 EMBL:AE014187 InterPro:IPR015947
SUPFAM:SSF88697 HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
ProtClustDB:CLSZ2429005 HSSP:Q9WZW0 RefSeq:XP_001348347.1
ProteinModelPortal:Q8ILS0 IntAct:Q8ILS0 MINT:MINT-1608535
PRIDE:Q8ILS0 EnsemblProtists:PF14_0174:mRNA GeneID:811755
KEGG:pfa:PF14_0174 EuPathDB:PlasmoDB:PF3D7_1417500 Uniprot:Q8ILS0
Length = 466
Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
Identities = 246/427 (57%), Positives = 315/427 (73%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I+P+ +IDTS WP+LLKNYD+LN+RT H+TPLP G SP R + +Y++YGIINLDKP
Sbjct: 10 IEPERKEAAIDTSNWPLLLKNYDKLNIRTSHFTPLPMGNSPYSRNIEEYLKYGIINLDKP 69
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKEYVCV
Sbjct: 70 SNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVC 129
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+ H K + +V L GA+FQRPPLI AVKRQLR+RTIY+SKLL+YD ++ VFW
Sbjct: 130 KFHSKPKSIEEVKLVLNNFQGAIFQRPPLICAVKRQLRVRTIYDSKLLDYDETNNVCVFW 189
Query: 231 ISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+ C+AGTY+RT+C MQELRRV+SG + E DNM T+HD++DAQ++YD
Sbjct: 190 VKCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQYIYDTTG 249
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLR++I PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I+V E+V+MT
Sbjct: 250 DESYLRKIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVNTEIVIMT 309
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL IA+MT+ V+AT DHGVV+ KRV+MDRDTY KWG G R+ KKKLI G
Sbjct: 310 TKGEAVALAIAQMTSTVIATVDHGVVSLTKRVIMDRDTYDVKWGFGNRSMEKKKLILAGL 369
Query: 411 LDKHGKLNEKTPQEWARNVVLPP---GGDSVVASLAAAAEQTVAEKETAG-VKKRKLDAS 466
LDK+GK NEKTP W ++ P G ++ +L TV E ++K L S
Sbjct: 370 LDKYGKPNEKTPLSWIKSEGYAPKLIGTNTTNYNLDIQNHNTVNENNNNNKIEKNNLTTS 429
Query: 467 GDSPALN 473
+ +N
Sbjct: 430 TINTNIN 436
>UNIPROTKB|Q8ILS0 [details] [associations]
symbol:PF14_0174 "Pseudouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002478 InterPro:IPR002501
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 Pfam:PF01509
PROSITE:PS50890 SMART:SM00359 GO:GO:0003723 GO:GO:0006396
EMBL:AE014187 InterPro:IPR015947 SUPFAM:SSF88697
HOGENOM:HOG000231224 KO:K11131 OMA:TIHESKL GO:GO:0009982
GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127 Pfam:PF08068
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 ProtClustDB:CLSZ2429005
HSSP:Q9WZW0 RefSeq:XP_001348347.1 ProteinModelPortal:Q8ILS0
IntAct:Q8ILS0 MINT:MINT-1608535 PRIDE:Q8ILS0
EnsemblProtists:PF14_0174:mRNA GeneID:811755 KEGG:pfa:PF14_0174
EuPathDB:PlasmoDB:PF3D7_1417500 Uniprot:Q8ILS0
Length = 466
Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
Identities = 246/427 (57%), Positives = 315/427 (73%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I+P+ +IDTS WP+LLKNYD+LN+RT H+TPLP G SP R + +Y++YGIINLDKP
Sbjct: 10 IEPERKEAAIDTSNWPLLLKNYDKLNIRTSHFTPLPMGNSPYSRNIEEYLKYGIINLDKP 69
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKEYVCV
Sbjct: 70 SNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVC 129
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+ H K + +V L GA+FQRPPLI AVKRQLR+RTIY+SKLL+YD ++ VFW
Sbjct: 130 KFHSKPKSIEEVKLVLNNFQGAIFQRPPLICAVKRQLRVRTIYDSKLLDYDETNNVCVFW 189
Query: 231 ISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+ C+AGTY+RT+C MQELRRV+SG + E DNM T+HD++DAQ++YD
Sbjct: 190 VKCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQYIYDTTG 249
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLR++I PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I+V E+V+MT
Sbjct: 250 DESYLRKIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVNTEIVIMT 309
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL IA+MT+ V+AT DHGVV+ KRV+MDRDTY KWG G R+ KKKLI G
Sbjct: 310 TKGEAVALAIAQMTSTVIATVDHGVVSLTKRVIMDRDTYDVKWGFGNRSMEKKKLILAGL 369
Query: 411 LDKHGKLNEKTPQEWARNVVLPP---GGDSVVASLAAAAEQTVAEKETAG-VKKRKLDAS 466
LDK+GK NEKTP W ++ P G ++ +L TV E ++K L S
Sbjct: 370 LDKYGKPNEKTPLSWIKSEGYAPKLIGTNTTNYNLDIQNHNTVNENNNNNKIEKNNLTTS 429
Query: 467 GDSPALN 473
+ +N
Sbjct: 430 TINTNIN 436
>UNIPROTKB|E2RGN8 [details] [associations]
symbol:E2RGN8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR002478 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01472 PROSITE:PS50890 SMART:SM00359
GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
GeneTree:ENSGT00510000047092 EMBL:AAEX03016940
Ensembl:ENSCAFT00000014816 Uniprot:E2RGN8
Length = 498
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 239/427 (55%), Positives = 311/427 (72%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+I+P+S +DTSQW +LLKN+++LNVR+ HYTPLP G PLK + D+ R G INLD
Sbjct: 35 FLIEPESKAAQLDTSQWLLLLKNFEKLNVRSTHYTPLPCGSHPLKGEIGDHSRTGFINLD 94
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAW++RILRV KT H GTLDPKV G +VCI+RAT AGKEYV
Sbjct: 95 KPSNPSSHEVVAWVRRILRV-KTAHGGTLDPKVAGCSLVCIERATAW-----SAGKEYVG 148
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH + +++RALE LTGA+FQRPPLI+AVKRQLR+RT+YESK++EYD D L +
Sbjct: 149 IVQLHSAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTVYESKMIEYDPDGRLGI 208
Query: 229 FWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+C MQELRRVRSG++ E D+M HDV+DAQW YD+
Sbjct: 209 FWVSCEAGTYIRTLCVHVGLLLGVGGQMQELRRVRSGVMSEKDHM---HDVLDAQWPYDS 265
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+YL RV+ PLE LLTS+KRLV+KD +NA+CY AK+M+PG+LR+E+ IEV EE+++
Sbjct: 266 RKDESYLLRVVYPLEKLLTSHKRLVMKDIFMNAVCYAAKIMLPGVLRYEDGIEVNEEILV 325
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEAV + IA MTTAV++TCDHG+VA+IKRV+M+RDT PRKWGLGP+AS K+ +I +
Sbjct: 326 ITTKGEAVCMAIALMTTAVISTCDHGMVAKIKRVIMERDTCPRKWGLGPKASQKRLMIKQ 385
Query: 409 GKLDKHGKLNEKTPQEWARNVVL---PPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
G LDKHGK TP W + V P ++V + + E K+K D+
Sbjct: 386 GLLDKHGKPTGSTPATWMQEYVDYSDPARKEAVAKEVTEVVKSPKVAAEVVKAPKQKRDS 445
Query: 466 SGDSPAL 472
D +L
Sbjct: 446 ESDEMSL 452
>UNIPROTKB|C9IYT0 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR002501 InterPro:IPR004802 InterPro:IPR020103
Pfam:PF01509 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
HOGENOM:HOG000231224 GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960
PANTHER:PTHR23127 Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425
EMBL:AC109993 HGNC:HGNC:2890 ChiTaRS:DKC1 IPI:IPI00852712
ProteinModelPortal:C9IYT0 SMR:C9IYT0 STRING:C9IYT0 PRIDE:C9IYT0
Ensembl:ENST00000413910 ArrayExpress:C9IYT0 Bgee:C9IYT0
Uniprot:C9IYT0
Length = 259
Score = 710 (255.0 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 133/182 (73%), Positives = 157/182 (86%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G INLD
Sbjct: 36 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLD 95
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 96 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 155
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L +
Sbjct: 156 IVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGI 215
Query: 229 FW 230
FW
Sbjct: 216 FW 217
Score = 185 (70.2 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 33/42 (78%), Positives = 40/42 (95%)
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRL 312
D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRL
Sbjct: 218 DHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRL 259
>UNIPROTKB|H7C2Q2 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002478 InterPro:IPR004521
InterPro:IPR004802 InterPro:IPR020103 Pfam:PF01472 PROSITE:PS50890
SMART:SM00359 GO:GO:0003723 GO:GO:0006396 InterPro:IPR015947
SUPFAM:SSF88697 GO:GO:0009982 GO:GO:0001522 PANTHER:PTHR23127
SUPFAM:SSF55120 TIGRFAMs:TIGR00425 TIGRFAMs:TIGR00451 EMBL:AC109993
HGNC:HGNC:2890 ChiTaRS:DKC1 ProteinModelPortal:H7C2Q2
Ensembl:ENST00000426673 Uniprot:H7C2Q2
Length = 208
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 132/203 (65%), Positives = 169/203 (83%)
Query: 228 VFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+C MQELRRVRSG++ E D+MVTMHDV+DAQWLYD
Sbjct: 3 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYD 62
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+V
Sbjct: 63 NHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIV 122
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 123 VITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIK 182
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+G LDKHGK + TP W + V
Sbjct: 183 QGLLDKHGKPTDSTPATWKQEYV 205
>UNIPROTKB|H7C0M1 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0006396
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 TIGRFAMs:TIGR00425 EMBL:AC109993
HGNC:HGNC:2890 ChiTaRS:DKC1 ProteinModelPortal:H7C0M1
Ensembl:ENST00000437719 Uniprot:H7C0M1
Length = 229
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 143/206 (69%), Positives = 170/206 (82%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G INLD
Sbjct: 22 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLD 81
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 82 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVG 141
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV- 227
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 142 IVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGA 201
Query: 228 ----------VFWISCEAGTYVRTMC 243
+FW+SCEAGTY+RT+C
Sbjct: 202 AFLLCVCILGIFWVSCEAGTYIRTLC 227
>UNIPROTKB|H7C2Q9 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR002501 InterPro:IPR004802
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0006396
GO:GO:0009982 GO:GO:0001522 InterPro:IPR012960 PANTHER:PTHR23127
Pfam:PF08068 SUPFAM:SSF55120 EMBL:AC109993 HGNC:HGNC:2890
ChiTaRS:DKC1 ProteinModelPortal:H7C2Q9 Ensembl:ENST00000452771
Bgee:H7C2Q9 Uniprot:H7C2Q9
Length = 169
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 90/115 (78%), Positives = 101/115 (87%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G INLD
Sbjct: 22 FLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLD 81
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
KP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AG
Sbjct: 82 KPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAG 136
>TIGR_CMR|CBU_1430 [details] [associations]
symbol:CBU_1430 "tRNA pseudouridine synthase B"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008033 InterPro:IPR015947
SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
OMA:LGCGAYV HOGENOM:HOG000231223 ProtClustDB:PRK05033
RefSeq:YP_338283.1 ProteinModelPortal:Q4AAX7 SMR:Q4AAX7
GeneID:1209336 KEGG:cbu:CBU_1430 PATRIC:17931611
BioCyc:CBUR227377:GJ7S-1417-MONOMER Uniprot:Q4AAX7
Length = 309
Score = 140 (54.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KRP VD G++ LDKP +S+E + +KR+ +K GH+G+LDP TG L +C+ A
Sbjct: 11 KRP-VD----GVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICLGEA 65
Query: 153 TRLVKSQQGAGKEYVCVARL 172
T+ + A K Y RL
Sbjct: 66 TKFSQFLLEADKSYSVKGRL 85
Score = 125 (49.1 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 41/151 (27%), Positives = 73/151 (48%)
Query: 203 VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRV 262
V+R+ R TIYE LL++D + + ++ C GTY+RT+ + LRR+
Sbjct: 150 VERKTRQVTIYELTLLDWDNES--IELYVHCSKGTYIRTLLDDVGEALGCGAHVVALRRL 207
Query: 263 RSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAI 322
R E D M+ + ++ ++ NY L R ++PLE +++ + + + +T +
Sbjct: 208 RVAHYHE-DQMIKLAH-LEREYDKANYTG---LDRYLLPLETMVSHFPAIKLSSSTAFYL 262
Query: 323 CYGAKLMIPGL-------LRFEND--IEVGE 344
G +M+P LR +ND I +GE
Sbjct: 263 QQGQAVMVPNAPTHGFVRLRDQNDQFIGIGE 293
Score = 104 (41.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 41/173 (23%), Positives = 75/173 (43%)
Query: 176 VPDVAKVA--RALEALTGAVFQRPPLISAVK----------RQ-----LRIRTIYESKLL 218
+P + K A + L A G + Q P + SA+K RQ + R + +L
Sbjct: 104 IPKLTKRALEKTLFAFRGVIDQTPSMYSALKHKGQPLYKLARQGIEVERKTRQVTIYELT 163
Query: 219 EYDVDRHLVVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHD 278
D D + ++ C GTY+RT+ + LRR+R E D M+ +
Sbjct: 164 LLDWDNESIELYVHCSKGTYIRTLLDDVGEALGCGAHVVALRRLRVAHYHE-DQMIKLAH 222
Query: 279 VMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
++ ++ NY L R ++PLE +++ + + + +T + G +M+P
Sbjct: 223 -LEREYDKANYTG---LDRYLLPLETMVSHFPAIKLSSSTAFYLQQGQAVMVP 271
>UNIPROTKB|H7BZF2 [details] [associations]
symbol:DKC1 "H/ACA ribonucleoprotein complex subunit 4"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR004802 InterPro:IPR020103
GO:GO:0003723 GO:GO:0006396 GO:GO:0009982 GO:GO:0001522
PANTHER:PTHR23127 SUPFAM:SSF55120 EMBL:AC109993 HGNC:HGNC:2890
ChiTaRS:DKC1 ProteinModelPortal:H7BZF2 Ensembl:ENST00000412124
Uniprot:H7BZF2
Length = 76
Score = 196 (74.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 37/56 (66%), Positives = 48/56 (85%)
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 3 RLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 58
>TIGR_CMR|ECH_0728 [details] [associations]
symbol:ECH_0728 "tRNA pseudouridine synthase B"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
ProtClustDB:CLSK2516851 RefSeq:YP_507531.1
ProteinModelPortal:Q2GGA2 STRING:Q2GGA2 GeneID:3927663
KEGG:ech:ECH_0728 PATRIC:20576900 OMA:PPKYSAK
BioCyc:ECHA205920:GJNR-731-MONOMER Uniprot:Q2GGA2
Length = 296
Score = 143 (55.4 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 41/118 (34%), Positives = 56/118 (47%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
YG INLDKP SS V +K+IL V+K GH+GTLDP +G L + I AT+++
Sbjct: 2 YGWINLDKPCGISSASAVNLVKKILNVKKVGHAGTLDPLASGVLPIAIGEATKVMPYAVD 61
Query: 162 AGKEYVC----------------VARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
K Y+ + D VP + +A+ G + Q PP SAV
Sbjct: 62 VVKSYLFTVQWGEQRTTDDIEGKIVAKSDIVPSSEDIKKAIPNFIGLLRQVPPNFSAV 119
Score = 98 (39.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 34/129 (26%), Positives = 59/129 (45%)
Query: 212 IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGEND 271
+ + KLL D + + F++ C+ G YVR++ +++L+RVR G +
Sbjct: 145 VLKLKLLSADQENNKADFYLLCKKGVYVRSIARDLGIELGCLGYVRKLQRVRVGCFRKK- 203
Query: 272 NMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRL--VVKDTTVNAICYGAKLM 329
N +T+ + + LY+N R +YL +PL +L K L V D + I G +
Sbjct: 204 NAITLEML---KMLYNNSRKCSYL----LPLWYVLQDMKHLNDVFSDIQIKKIKNGQNIE 256
Query: 330 IPGLLRFEN 338
+ L N
Sbjct: 257 LNNLYVVRN 265
>UNIPROTKB|Q9KU78 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006400 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 OMA:LGCGAYV
ProtClustDB:PRK05033 PIR:C82298 RefSeq:NP_230294.1
ProteinModelPortal:Q9KU78 SMR:Q9KU78 DNASU:2615435 GeneID:2615435
KEGG:vch:VC0645 PATRIC:20080403 Uniprot:Q9KU78
Length = 312
Score = 146 (56.5 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+I LDKP SS++ + +KR+ EK GH+G LDP TG L +C+ AT+ +
Sbjct: 11 HGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATKFSQFLLD 70
Query: 162 AGKEYVCVARLHDK 175
+ K Y +A+L ++
Sbjct: 71 SDKRYRVIAKLGER 84
Score = 93 (37.8 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 35/136 (25%), Positives = 61/136 (44%)
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+A+ + V + AL+ +++ V R+ R T+YE +L ++ D V
Sbjct: 110 CIAKFRGETDQVPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDE--V 167
Query: 228 VFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILG-ENDNMVTMHDVMDAQWLY 286
+ C GTY+RT+ + LRRV G+ + MVT+ ++A +
Sbjct: 168 EMEVHCSKGTYIRTIVDDLGEMLGCGAHVTMLRRV--GVANYPYERMVTLEQ-LNAL-VE 223
Query: 287 DNYRDEAYLRRVIMPL 302
+RDE + V+ PL
Sbjct: 224 QAHRDEKAVADVLDPL 239
>TIGR_CMR|VC_0645 [details] [associations]
symbol:VC_0645 "tRNA pseudouridine 55 synthase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015240 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09157
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 OMA:LGCGAYV ProtClustDB:PRK05033 PIR:C82298
RefSeq:NP_230294.1 ProteinModelPortal:Q9KU78 SMR:Q9KU78
DNASU:2615435 GeneID:2615435 KEGG:vch:VC0645 PATRIC:20080403
Uniprot:Q9KU78
Length = 312
Score = 146 (56.5 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+I LDKP SS++ + +KR+ EK GH+G LDP TG L +C+ AT+ +
Sbjct: 11 HGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATKFSQFLLD 70
Query: 162 AGKEYVCVARLHDK 175
+ K Y +A+L ++
Sbjct: 71 SDKRYRVIAKLGER 84
Score = 93 (37.8 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 35/136 (25%), Positives = 61/136 (44%)
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+A+ + V + AL+ +++ V R+ R T+YE +L ++ D V
Sbjct: 110 CIAKFRGETDQVPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDE--V 167
Query: 228 VFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILG-ENDNMVTMHDVMDAQWLY 286
+ C GTY+RT+ + LRRV G+ + MVT+ ++A +
Sbjct: 168 EMEVHCSKGTYIRTIVDDLGEMLGCGAHVTMLRRV--GVANYPYERMVTLEQ-LNAL-VE 223
Query: 287 DNYRDEAYLRRVIMPL 302
+RDE + V+ PL
Sbjct: 224 QAHRDEKAVADVLDPL 239
>TAIR|locus:2145708 [details] [associations]
symbol:AT5G14460 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005215 "transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA;ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;TAS] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0006396
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:At.31932 UniGene:At.54843 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 EMBL:AK226674 IPI:IPI00542969 RefSeq:NP_196950.2
ProteinModelPortal:Q0WVR7 SMR:Q0WVR7 STRING:Q0WVR7 PaxDb:Q0WVR7
PRIDE:Q0WVR7 EnsemblPlants:AT5G14460.1 GeneID:831297
KEGG:ath:AT5G14460 TAIR:At5g14460 HOGENOM:HOG000006019
InParanoid:Q0WVR7 OMA:IWQVPPM PhylomeDB:Q0WVR7
ProtClustDB:CLSN2708543 Genevestigator:Q0WVR7 Uniprot:Q0WVR7
Length = 540
Score = 148 (57.2 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ ++KP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT++V QG
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382
Query: 164 KEYVCVARL 172
K Y V RL
Sbjct: 383 KGYSGVFRL 391
Score = 76 (31.8 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 217 LLEYDVDRHL-----VVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGEND 271
+ ++D++R L ++F + C GTY+R++C + LRR G ND
Sbjct: 465 IFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKALGSCAHLTALRRDSIGEYSAND 524
Score = 56 (24.8 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 173 HDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
H K D+ K AL + G ++Q PP+ SA+K
Sbjct: 412 HIKDDDIKK---ALTSFLGEIWQVPPMFSAIK 440
>UNIPROTKB|P62190 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015225 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09142
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003723 GO:GO:0008033
InterPro:IPR015947 SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
TIGRFAMs:TIGR00431 HOGENOM:HOG000231225 OMA:QVPSKVS PIR:H70884
RefSeq:NP_217309.1 RefSeq:NP_337368.1 RefSeq:YP_006516239.1
PDB:1SGV PDBsum:1SGV ProteinModelPortal:P62190 SMR:P62190
PRIDE:P62190 EnsemblBacteria:EBMYCT00000003082
EnsemblBacteria:EBMYCT00000069933 GeneID:13317578 GeneID:888587
GeneID:925419 KEGG:mtc:MT2862.1 KEGG:mtu:Rv2793c
KEGG:mtv:RVBD_2793c PATRIC:18128048 TubercuList:Rv2793c
ProtClustDB:PRK03287 EvolutionaryTrace:P62190 Uniprot:P62190
Length = 298
Score = 160 (61.4 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ +DKPA +SH+VV +RI + GH+GTLDP TG L++ I+RAT+++ A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 163 GKEYVCVARL 172
K Y RL
Sbjct: 67 PKSYAATIRL 76
Score = 56 (24.8 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 231 ISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
I C +GTY+R + + LRR R G E D ++ D+ + L +
Sbjct: 171 IDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRF-ELDQARSLDDLAERPALSLSL- 228
Query: 291 DEAYL 295
DEA L
Sbjct: 229 DEACL 233
Score = 44 (20.5 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 179 VAKVARALEALTGAVFQRPPLISAVK 204
+ + A+E L G + Q P +SA+K
Sbjct: 100 IEAIDAAMERLRGEIRQVPSSVSAIK 125
>TIGR_CMR|GSU_1591 [details] [associations]
symbol:GSU_1591 "tRNA pseudouridine synthase B"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:NP_952642.1 ProteinModelPortal:P60344
GeneID:2687358 KEGG:gsu:GSU1591 PATRIC:22026027
ProtClustDB:CLSK2522239 BioCyc:GSUL243231:GH27-1625-MONOMER
Uniprot:P60344
Length = 304
Score = 131 (51.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G I +DKP +SH+VVA +++ LR +K GH+GTLDP TG L V + T+ + +
Sbjct: 3 GFIVIDKPIGLTSHDVVARVRQTLRQKKAGHTGTLDPFATGVLPVAVGEGTKAIPYLDES 62
Query: 163 GKEY 166
K Y
Sbjct: 63 TKVY 66
Score = 95 (38.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 31/99 (31%), Positives = 43/99 (43%)
Query: 182 VARALEALTGAVFQRPPLISAVKR---------------QLRIRTIYESKLLEYDVDRHL 226
V + + TG + Q PP+ SA+KR + R I L+ +D L
Sbjct: 99 VRDVVSSFTGKLSQLPPMFSALKRDGVPLYKLARTGREVERERREIEVFSLVVDSIDLPL 158
Query: 227 VVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSG 265
V F +SC GTYVRT+ + ELRR+ SG
Sbjct: 159 VTFTLSCSRGTYVRTLAHDMGERLGCGAHLTELRRLSSG 197
>UNIPROTKB|Q97QJ3 [details] [associations]
symbol:truB "tRNA pseudouridine synthase B" species:170187
"Streptococcus pneumoniae TIGR4" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_01080 InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR015225 InterPro:IPR020103 Pfam:PF01509 Pfam:PF09142
GO:GO:0003723 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV PIR:F95140 RefSeq:NP_345679.1 ProteinModelPortal:Q97QJ3
EnsemblBacteria:EBSTRT00000026891 GeneID:931726 KEGG:spn:SP_1212
PATRIC:19706819 ProtClustDB:PRK02484 Uniprot:Q97QJ3
Length = 292
Score = 153 (58.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL +K GH GTLDP V G L + + +ATR+V+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDE 62
Query: 163 GKEY 166
GK Y
Sbjct: 63 GKIY 66
Score = 66 (28.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 178 DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
D V A+ +LTG + Q PP+ SAVK + R +YE +V+R
Sbjct: 96 DEKLVDEAIASLTGPITQIPPMYSAVK--VNGRKLYEYARAGQEVER 140
Score = 63 (27.2 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 17/68 (25%), Positives = 25/68 (36%)
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVR 263
+RQ+ I + + YD F + C GTY+RT+ M L R
Sbjct: 142 ERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVDLGEKLGYAAHMSHLTRTS 201
Query: 264 SGILGEND 271
+ L D
Sbjct: 202 AAGLQLED 209
>TIGR_CMR|CHY_1763 [details] [associations]
symbol:CHY_1763 "tRNA pseudouridine synthase B"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_01080
InterPro:IPR002501 InterPro:IPR014780 InterPro:IPR020103
Pfam:PF01509 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
HOGENOM:HOG000231225 RefSeq:YP_360583.1 ProteinModelPortal:Q3ABA1
STRING:Q3ABA1 GeneID:3728168 KEGG:chy:CHY_1763 PATRIC:21276639
OMA:QVPSKVS BioCyc:CHYD246194:GJCN-1762-MONOMER Uniprot:Q3ABA1
Length = 288
Score = 147 (56.8 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG- 161
G INL KP +SH+VVA++++ L+ K GH GTLDP G L V + +ATRL++ +
Sbjct: 3 GFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLENV 62
Query: 162 AGKEYV 167
A KEY+
Sbjct: 63 AMKEYL 68
Score = 71 (30.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 29/119 (24%), Positives = 54/119 (45%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVF--QRP-PLISAVKRQLRIRTIYESKLL 218
AG + H ++ +A A++ ++ QR + KR++ I +I +LL
Sbjct: 97 AGDIEKVLGHFHGEIEQTPPLASAVKVSGKPLYRYQRQGEKVEPPKRKVFIDSI---ELL 153
Query: 219 EYDVDRH--LVVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSG-ILGENDNMV 274
E+ D+ V +I C GTY+R++ ++ L R RSG L ++ N++
Sbjct: 154 EFLADKPQPAVRLYIRCSRGTYIRSIANEIGNLLKTGATLKFLLRTRSGPFLLDDSNLL 212
>TIGR_CMR|CPS_2205 [details] [associations]
symbol:CPS_2205 "tRNA pseudouridine synthase B"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 InterPro:IPR015947
SUPFAM:SSF88697 eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431
OMA:LGCGAYV RefSeq:YP_268930.1 STRING:Q482T7 GeneID:3520371
KEGG:cps:CPS_2205 PATRIC:21467525 HOGENOM:HOG000231223
ProtClustDB:PRK05033 BioCyc:CPSY167879:GI48-2275-MONOMER
Uniprot:Q482T7
Length = 318
Score = 145 (56.1 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 39/120 (32%), Positives = 60/120 (50%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS+ + +KRI +K GH+G LDP TG L +C+ T+ +
Sbjct: 12 GVLLLDKPHGLSSNHALQTVKRIYFAQKAGHTGALDPLATGMLPICLGEGTKFSQYLLDT 71
Query: 163 GKEYVCVARL--------------HDKVPDVA--KVARALEALTGAVFQRPPLISAVKRQ 206
K Y A+L +K DV+ ++A+AL++ G Q P + SA+K Q
Sbjct: 72 DKTYQVTAKLGIRTTTSDAGGEVVSEKTVDVSSEQLAKALDSFRGTTKQVPSMYSALKHQ 131
Score = 66 (28.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 28/125 (22%), Positives = 52/125 (41%)
Query: 203 VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRV 262
V R+ R T++ +LL ++ D V I GTY+RT+ + LRR
Sbjct: 145 VPREARDITVFNLELLRFEHDE--VELNIHVSKGTYIRTIVDDLGELLGCGAHVAHLRRS 202
Query: 263 RSGILGENDNMVTMHDV--MDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVN 320
G + M+T+ ++ + Q D L +++P+ + + V D + N
Sbjct: 203 AVGNYPV-EKMITLPELEALLEQANADEITPSDVLDPLLLPMNSAVDGMHCVYVDDMSAN 261
Query: 321 AICYG 325
+ +G
Sbjct: 262 FLRHG 266
>UNIPROTKB|P60340 [details] [associations]
symbol:truB "tRNA pseudouridine 55 synthase" species:83333
"Escherichia coli K-12" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;IMP] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR015240 InterPro:IPR020103
Pfam:PF01509 Pfam:PF09157 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0008033 InterPro:IPR015947 SUPFAM:SSF88697
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:X13775 KO:K03177 PANTHER:PTHR13767 EMBL:X13270
TIGRFAMs:TIGR00431 OMA:LGCGAYV HOGENOM:HOG000231223
ProtClustDB:PRK05033 EMBL:S79856 PIR:S01916 RefSeq:NP_417635.1
RefSeq:YP_491353.1 PDB:1K8W PDB:1R3F PDB:1ZL3 PDBsum:1K8W
PDBsum:1R3F PDBsum:1ZL3 ProteinModelPortal:P60340 SMR:P60340
IntAct:P60340 PRIDE:P60340 EnsemblBacteria:EBESCT00000000040
EnsemblBacteria:EBESCT00000000041 EnsemblBacteria:EBESCT00000017815
GeneID:12933440 GeneID:947687 KEGG:ecj:Y75_p3088 KEGG:eco:b3166
PATRIC:32121750 EchoBASE:EB1164 EcoGene:EG11177
BioCyc:EcoCyc:EG11177-MONOMER BioCyc:ECOL316407:JW3135-MONOMER
BioCyc:MetaCyc:EG11177-MONOMER EvolutionaryTrace:P60340
Genevestigator:P60340 Uniprot:P60340
Length = 314
Score = 143 (55.4 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 38/120 (31%), Positives = 59/120 (49%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS++ + +KRI + GH+G LDP TG L +C+ AT+ + +
Sbjct: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72
Query: 163 GKEYVCVARLHDKV-------------P---DVAKVARALEALTGAVFQRPPLISAVKRQ 206
K Y +ARL + P ++A AL+ G + Q P + SA+K Q
Sbjct: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132
Score = 56 (24.8 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 203 VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTM 242
V R+ R T+YE + ++ + + I C GTY+RT+
Sbjct: 146 VPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTI 183
>TIGR_CMR|NSE_0101 [details] [associations]
symbol:NSE_0101 "tRNA pseudouridine synthase B"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0130
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K03177
PANTHER:PTHR13767 TIGRFAMs:TIGR00431 OMA:KKSFRNE
HOGENOM:HOG000231223 RefSeq:YP_506001.1 ProteinModelPortal:Q2GEU5
STRING:Q2GEU5 GeneID:3931563 KEGG:nse:NSE_0101 PATRIC:22680305
ProtClustDB:CLSK2528072 BioCyc:NSEN222891:GHFU-137-MONOMER
Uniprot:Q2GEU5
Length = 235
Score = 141 (54.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 53/196 (27%), Positives = 84/196 (42%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G ++LDK + SS + +KR V+K G+ GTLDP TG L++ + R T+L+ +
Sbjct: 12 GWLSLDKESGISSFGALKLLKRKFGVKKAGYVGTLDPIATGVLVIALGRTTKLIPQFDDS 71
Query: 163 GKEYV----------------CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK-R 205
KEY V R +P + + L + G Q PP SA+
Sbjct: 72 FKEYEFAIEWGAETDTLDSEGAVLRNGGLIPSTSAILGVLPSFLGEQLQVPPKFSAIHVN 131
Query: 206 QLRIRTIYESKLLEYDVD-RHLVVFWI--------------SCEAGTYVRTMCXXXXXXX 250
R ++ + + E+++ R +V+ I SC GTYVR +
Sbjct: 132 GHRAYSLARAGI-EFNMQPRRVVIHSIECMNHSAGQSTLKVSCSKGTYVRALARDIARKL 190
Query: 251 XXXXXMQELRRVRSGI 266
+ ++RR RSGI
Sbjct: 191 ESLAFVSKIRRTRSGI 206
>TIGR_CMR|APH_0769 [details] [associations]
symbol:APH_0769 "tRNA pseudouridine synthase B"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 RefSeq:YP_505348.1
ProteinModelPortal:Q2GJV3 STRING:Q2GJV3 GeneID:3930851
KEGG:aph:APH_0769 PATRIC:20950230 HOGENOM:HOG000231225 OMA:LGCGAYV
ProtClustDB:CLSK2516851 BioCyc:APHA212042:GHPM-785-MONOMER
Uniprot:Q2GJV3
Length = 300
Score = 118 (46.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+++G +N+DKP SS VV +K++L+ K GH+GTLDP TG L + AT+
Sbjct: 1 MKHGWLNIDKPYGVSSGSVVGKLKKMLQC-KVGHAGTLDPLATGVLPIAFGEATKTTNYA 59
Query: 160 QGAGKEY 166
K Y
Sbjct: 60 TDTLKSY 66
Score = 67 (28.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 26/119 (21%), Positives = 48/119 (40%)
Query: 212 IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGEND 271
I E +LL D + I+C G YVR + + LRR G E
Sbjct: 145 ITEIELLSVDSGSNTADLRITCGKGVYVRAVARDLGITLGCYGYVARLRRTMVGPFTEA- 203
Query: 272 NMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
N+VT+ ++ + +N +EA + PL ++++ + + T + G + +
Sbjct: 204 NIVTLQELETL--VGENKLEEA-----VFPLSIVMSGLPHIEIDVETAKVVKNGRNIRL 255
>TIGR_CMR|DET_0981 [details] [associations]
symbol:DET_0981 "tRNA pseudouridine synthase B"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:YP_181704.1 ProteinModelPortal:Q3Z7U5
STRING:Q3Z7U5 GeneID:3229762 KEGG:det:DET0981 PATRIC:21609011
ProtClustDB:PRK00130 BioCyc:DETH243164:GJNF-982-MONOMER
Uniprot:Q3Z7U5
Length = 300
Score = 122 (48.0 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+N++KP +S VV+ ++ I +K GH G LDP TG + V + ATRL++
Sbjct: 3 GILNINKPPGLTSFGVVSKVRHIYSQKKVGHGGMLDPSATGVIPVFLGSATRLIEYLSSV 62
Query: 163 GKEYVCVARL 172
K Y+ L
Sbjct: 63 RKTYLAEIEL 72
Score = 59 (25.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 34/164 (20%), Positives = 65/164 (39%)
Query: 182 VARALEALTGAVFQRPPLISAVK-RQLRIRTIYES---------KLLEYDVD-----RHL 226
V AL G + Q PP+ SAVK R +R+ + K Y ++ +
Sbjct: 99 VRNALPDFLGEITQIPPMYSAVKHRGVRLYNLARQGIEVERNPRKAAIYGIEFLGFASPV 158
Query: 227 VVFWISCEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+ I C GTY+R++ ++ L R G ++ T D+ D +
Sbjct: 159 LRLRIECGHGTYIRSIAFDLGRKLGCGAYLKTLVRESYGPF----HLTTSLDLADLEAAE 214
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
+ R L +++P E + R+ + D ++ + G ++ +
Sbjct: 215 NKGR----LADILLPPEAAVGHLPRITLDDESITRLVNGLEIRL 254
>UNIPROTKB|E1BEB7 [details] [associations]
symbol:LOC530353 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723
GO:GO:0006396 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K03177
PANTHER:PTHR13767 GeneTree:ENSGT00530000063611 OMA:PFFTLDV
TIGRFAMs:TIGR00431 EMBL:DAAA02059285 EMBL:DAAA02059286
IPI:IPI00716593 RefSeq:XP_003584154.1 RefSeq:XP_003587944.1
Ensembl:ENSBTAT00000017209 GeneID:530353 KEGG:bta:530353
Uniprot:E1BEB7
Length = 352
Score = 102 (41.0 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARL 172
W KR + K GH GTLD G L+V I R T+++ S K YV + L
Sbjct: 106 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGRGTKMLTSMLSGSKRYVAIGEL 157
Score = 76 (31.8 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 33/154 (21%), Positives = 62/154 (40%)
Query: 173 HDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ-LRIRTIYE-SKLLEYDVDRHLVVFW 230
+DK+ + L+ TG + Q PPL SA+K+ R+ T+ + +++E R + V+
Sbjct: 176 YDKITQ-EDIESILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYS 234
Query: 231 IS--------------CEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTM 276
+S C G Y+R++ + EL R + G +
Sbjct: 235 LSLQKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEE----- 289
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
H + + +W D+ ++P E+ L K
Sbjct: 290 HALPEDKWTIDDIAQSLQRCSSLLPAELALKKSK 323
>MGI|MGI:1919383 [details] [associations]
symbol:Trub1 "TruB pseudouridine (psi) synthase homolog 1
(E. coli)" species:10090 "Mus musculus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 MGI:MGI:1919383
GO:GO:0003723 GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:AK018525 EMBL:AK031674 EMBL:AK169221 EMBL:BC089592
IPI:IPI00135295 IPI:IPI00223749 RefSeq:NP_082391.1
RefSeq:NP_084115.2 UniGene:Mm.258404 HSSP:P60340
ProteinModelPortal:Q8C0D0 SMR:Q8C0D0 STRING:Q8C0D0
PhosphoSite:Q8C0D0 PaxDb:Q8C0D0 PRIDE:Q8C0D0
Ensembl:ENSMUST00000026072 Ensembl:ENSMUST00000026073 GeneID:72133
KEGG:mmu:72133 UCSC:uc008iae.2 UCSC:uc008iag.2 InParanoid:Q8C0D0
NextBio:335520 Bgee:Q8C0D0 Genevestigator:Q8C0D0
GermOnline:ENSMUSG00000025086 Uniprot:Q8C0D0
Length = 338
Score = 99 (39.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARL 172
W KR + K GH GTLD G L+V I R T+++ S K Y+ + L
Sbjct: 92 WNKRQKQTLKVGHGGTLDSAAQGVLVVGIGRGTKMLTSMLSGSKRYITIGEL 143
Score = 76 (31.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 41/169 (24%), Positives = 69/169 (40%)
Query: 173 HDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ-LRIRTIYES-KLLEYDVDRHLVVFW 230
+DK+ + L+ TG + Q PPL SA+K+ R+ T+ + K++E R + V
Sbjct: 162 YDKITR-EDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKKGKVVEARPARPVTVHS 220
Query: 231 IS--------------CEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTM 276
IS C G Y+R++ + EL R + G +
Sbjct: 221 ISLLKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCASVLELTRTKQGPF-----TLAQ 275
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
H + + +W D+ E L R L LT +K+L +++ I G
Sbjct: 276 HALPEDRWTIDDI--EQSLERCTSLLPEELT-FKKLKSDNSSDQVISCG 321
>TIGR_CMR|SPO_3837 [details] [associations]
symbol:SPO_3837 "tRNA pseudouridine synthase B"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_01080 InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 TIGRFAMs:TIGR00431 HOGENOM:HOG000231225
OMA:LGCGAYV RefSeq:YP_169025.1 ProteinModelPortal:Q5LLT4
GeneID:3196374 KEGG:sil:SPO3837 PATRIC:23381177
ProtClustDB:PRK05389 Uniprot:Q5LLT4
Length = 303
Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/118 (34%), Positives = 54/118 (45%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G + +DKPA +S VV ++ L K GH+GTLDP+ TG L + + AT+ V A
Sbjct: 12 GWLVVDKPAGMTSTAVVNKVRWALGANKAGHAGTLDPEATGVLAIALGEATKTVPYITDA 71
Query: 163 GKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K YV RL D P ++ AL G + Q PP SAVK
Sbjct: 72 LKAYVFTVRLGQATNTDDAEGEVIASSDLRPTDEQIKDALAPFLGDIMQVPPKFSAVK 129
>UNIPROTKB|Q8WWH5 [details] [associations]
symbol:TRUB1 "Probable tRNA pseudouridine synthase 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002501 InterPro:IPR014780
InterPro:IPR020103 Pfam:PF01509 GO:GO:0003723 GO:GO:0008033
eggNOG:COG0130 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K03177 PANTHER:PTHR13767 EMBL:AF448144 EMBL:BX648709
EMBL:AK312805 EMBL:AK223567 EMBL:AL355340 EMBL:BC030601
IPI:IPI00103341 RefSeq:NP_631908.1 UniGene:Hs.21187 HSSP:Q9WZW0
ProteinModelPortal:Q8WWH5 SMR:Q8WWH5 STRING:Q8WWH5
PhosphoSite:Q8WWH5 DMDM:74751577 PaxDb:Q8WWH5 PeptideAtlas:Q8WWH5
PRIDE:Q8WWH5 DNASU:142940 Ensembl:ENST00000298746 GeneID:142940
KEGG:hsa:142940 UCSC:uc001lcd.3 CTD:142940 GeneCards:GC10P116687
HGNC:HGNC:16060 HPA:HPA037914 MIM:610726 neXtProt:NX_Q8WWH5
PharmGKB:PA38086 HOGENOM:HOG000063679 HOVERGEN:HBG094094
InParanoid:Q8WWH5 OMA:PFFTLDV OrthoDB:EOG4S4PGQ PhylomeDB:Q8WWH5
GenomeRNAi:142940 NextBio:84645 ArrayExpress:Q8WWH5 Bgee:Q8WWH5
CleanEx:HS_TRUB1 Genevestigator:Q8WWH5 GermOnline:ENSG00000165832
TIGRFAMs:TIGR00431 Uniprot:Q8WWH5
Length = 349
Score = 94 (38.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 21/67 (31%), Positives = 28/67 (41%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
W KR + K GH GTLD G L+V I T+++ S K Y + L +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLD 163
Query: 181 KVARALE 187
R E
Sbjct: 164 STGRVTE 170
Score = 73 (30.8 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 34/154 (22%), Positives = 61/154 (39%)
Query: 173 HDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ-LRIRTIYE-SKLLEYDVDRHLVVFW 230
+DK+ + L+ TG + Q PPL SA+K+ R+ T+ + +++E R + V+
Sbjct: 174 YDKITQ-EDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYS 232
Query: 231 IS--------------CEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSGILGENDNMVTM 276
IS C G Y+R++ + EL R + G +
Sbjct: 233 ISLQKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEE----- 287
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
H + + +W D+ + P E+ L K
Sbjct: 288 HALPEDKWTIDDIAQSLEHCSSLFPAELALKKSK 321
>RGD|1308502 [details] [associations]
symbol:Trub1 "TruB pseudouridine (psi) synthase homolog 1 (E.
coli)" species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR002501
InterPro:IPR014780 InterPro:IPR020103 Pfam:PF01509 RGD:1308502
GO:GO:0003723 GO:GO:0008033 eggNOG:COG0130 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K03177 PANTHER:PTHR13767
GeneTree:ENSGT00530000063611 CTD:142940 HOGENOM:HOG000063679
HOVERGEN:HBG094094 OMA:PFFTLDV OrthoDB:EOG4S4PGQ TIGRFAMs:TIGR00431
EMBL:BC087683 IPI:IPI00372539 RefSeq:NP_001012173.1
UniGene:Rn.24324 HSSP:P62190 ProteinModelPortal:Q5M934
STRING:Q5M934 PRIDE:Q5M934 Ensembl:ENSRNOT00000023309 GeneID:361775
KEGG:rno:361775 InParanoid:Q5M934 NextBio:677570
Genevestigator:Q5M934 GermOnline:ENSRNOG00000017321 Uniprot:Q5M934
Length = 341
Score = 97 (39.2 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARL 172
W KR + K GH GTLD G L+V I R T+++ S K Y+ L
Sbjct: 95 WNKRQKQTLKVGHGGTLDSAAQGVLVVGIGRGTKMLTSMLSGSKRYIATGEL 146
Score = 63 (27.2 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 27/109 (24%), Positives = 45/109 (41%)
Query: 173 HDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ-LRIRTIYE-SKLLEYDVDRHLVVFW 230
+DK+ + L+ TG + Q PPL SA+K+ R+ T+ + + +E R + V
Sbjct: 165 YDKITQ-EDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGETVEARPARPVTVHS 223
Query: 231 IS--------------CEAGTYVRTMCXXXXXXXXXXXXMQELRRVRSG 265
IS C G Y+R++ + EL R + G
Sbjct: 224 ISLLKYQPPFFTLDVECGGGFYIRSLVSDIGKELSSCATVLELTRTKQG 272
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 602 438 0.00088 118 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 616 (65 KB)
Total size of DFA: 264 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.08u 0.10s 34.18t Elapsed: 00:00:02
Total cpu time: 34.08u 0.11s 34.19t Elapsed: 00:00:02
Start: Tue May 21 08:49:58 2013 End: Tue May 21 08:50:00 2013