BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007467
(602 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225440338|ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis
vinifera]
Length = 586
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/553 (77%), Positives = 463/553 (83%), Gaps = 35/553 (6%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKD--FIIKPQSFTP 58
M+E+ELSRSEKKK K KS T+ D ++ T KD F+IKPQSFTP
Sbjct: 1 MSELELSRSEKKKKKNKS------------RTEALDVVEFGSDPTQKDGEFLIKPQSFTP 48
Query: 59 SIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEV 118
S+DTSQWPILLKNYDRLNVRTGHYTPLP+GYSPLKRPL +YIRYGI+NLDKPANPSSHEV
Sbjct: 49 SLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEV 108
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH VPD
Sbjct: 109 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPD 168
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
VAKVARALE LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVFWISCEAGTY
Sbjct: 169 VAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTY 228
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
VRT+CVHLGLILGVGGHMQELRRVRSGILGE DNMVTMHDVMDAQW+YDNYRDE+YLRRV
Sbjct: 229 VRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRV 288
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
IMPLEV+LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFEN+IE GEEVVLMTTKGEA+AL
Sbjct: 289 IMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIAL 348
Query: 359 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLN 418
GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRA+MKKKLI EGKL+KHGK N
Sbjct: 349 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAAMKKKLITEGKLNKHGKPN 408
Query: 419 EKTPQEWARNVVLPPGGDSVVASLAAAAEQTV-----AEKETAG-VKKRKLDASGDSPAL 472
E TP EW RNVVLP GGDS+VASLAAA E TV ++E G +KRKL+ S D P
Sbjct: 409 ENTPSEWLRNVVLPTGGDSMVASLAAAVEPTVKAETDVKEEIDGEQRKRKLNESTDDPVT 468
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
K K+KK E+ +E +E EKKEKKKKKKK+KENG A EK
Sbjct: 469 VPAK---------------KIKKEIEEVSEFVETEKKEKKKKKKKEKENGDAALSDEEKA 513
Query: 533 EKVKAKKHKDKDE 545
KVK ++ +DKDE
Sbjct: 514 VKVKIEEDEDKDE 526
>gi|224090025|ref|XP_002308911.1| predicted protein [Populus trichocarpa]
gi|222854887|gb|EEE92434.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/496 (80%), Positives = 426/496 (85%), Gaps = 29/496 (5%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSI 60
M+EVELSRSEKK T DA+ T KDF+IKPQ+FTP+I
Sbjct: 1 MSEVELSRSEKK--------------KHKKKTQETQTDANPTTDTDKDFMIKPQNFTPTI 46
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTSQWPILLKNYDRLNVRTGHYTPLP+G+SPLKRPL +YIRYGI+NLDKPANPSSHEVVA
Sbjct: 47 DTSQWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEYIRYGIMNLDKPANPSSHEVVA 106
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHDKVPDVA
Sbjct: 107 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHDKVPDVA 166
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
KVARALE LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVFWISCEAGTYVR
Sbjct: 167 KVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWISCEAGTYVR 226
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
TMCVHLGLILGVG HMQELRRVRSGILGE DNMVTMHDVMDAQW+YDNYRDE+YLRR IM
Sbjct: 227 TMCVHLGLILGVGAHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRAIM 286
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDIE GEEVVLMTTKGEAVALGI
Sbjct: 287 PLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAVALGI 346
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
AEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRAS+KKKLI+EGKLDKHGK NE
Sbjct: 347 AEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASIKKKLISEGKLDKHGKPNEN 406
Query: 421 TPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGV-------------KKRKLDASG 467
TP EW RN+VLPPGGDS+VA +AAAA + V ++ +KRKL+ S
Sbjct: 407 TPHEWMRNLVLPPGGDSMVAGIAAAAAEPVVKEIGEEEKKKKNKDGEDGEGRKRKLNESS 466
Query: 468 DSPA--LNAKKAKVEE 481
DSPA + AKK K EE
Sbjct: 467 DSPAAQVPAKKTKTEE 482
>gi|255564866|ref|XP_002523427.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
gi|223537377|gb|EEF39006.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
Length = 581
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/462 (83%), Positives = 410/462 (88%), Gaps = 12/462 (2%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKPQSFTP DTS WPILLKNYDRLNVRTGHYTPLP+G+SPLKRPL +YIRYG++NLDK
Sbjct: 17 MIKPQSFTPPNDTSNWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEYIRYGVMNLDK 76
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV
Sbjct: 77 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 136
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
ARLHDKVPDVAKVARALE LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVF
Sbjct: 137 ARLHDKVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVF 196
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE DNMVTMHDVMDAQW++DNY
Sbjct: 197 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVFDNY 256
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE YLRRVIMPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFEND+E GEEVVLM
Sbjct: 257 RDETYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEAGEEVVLM 316
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+ALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGP+ASMKKKLIAEG
Sbjct: 317 TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAEG 376
Query: 410 KLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
KLDKHGK NE TPQEW RN+V LP GGD++VAS AAA KETA +KK +
Sbjct: 377 KLDKHGKPNENTPQEWMRNLVALPTGGDAIVASTAAAKGSATENKETAALKKETGEVEEG 436
Query: 469 SPALNAKKAKVEEV-----------VEVEKEETVKVKKVKED 499
+K+K E + +VEKE+ ++VKKVKED
Sbjct: 437 KEKKKKRKSKDESIESPAAEAPAKKAKVEKEDAIEVKKVKED 478
>gi|224139760|ref|XP_002323264.1| predicted protein [Populus trichocarpa]
gi|222867894|gb|EEF05025.1| predicted protein [Populus trichocarpa]
Length = 482
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/436 (86%), Positives = 400/436 (91%), Gaps = 15/436 (3%)
Query: 12 KKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKN 71
KKHKKK+ + T+T D T KDF+IKPQ+FTP+IDTSQWPILLKN
Sbjct: 1 KKHKKKTQETE---------TETNPTD------TVKDFMIKPQNFTPTIDTSQWPILLKN 45
Query: 72 YDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKT 131
YDRLNVRTGHYTPLP G+SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRVEKT
Sbjct: 46 YDRLNVRTGHYTPLPCGHSPLKRPLAEYIRYGVMNLDKPANPSSHEVVAWIKRILRVEKT 105
Query: 132 GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTG 191
GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHDK+ DV KVARALE LTG
Sbjct: 106 GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHDKIADVTKVARALETLTG 165
Query: 192 AVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILG 251
AVFQRPPLISAVKRQLRIRTIYESKLLEYD D+HLVVFWISCEAGTYVRTMCVHLGLILG
Sbjct: 166 AVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILG 225
Query: 252 VGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKR 311
VGGHMQELRRVRSGILGE DNMVTMHDVMDAQW+YDNYRDE+YLRRVIMPLEV+LTSYKR
Sbjct: 226 VGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVILTSYKR 285
Query: 312 LVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATC 371
LVVKD+ VNAICYGAKLMIPGLLRFENDIE GEEVVLMTTKGEA+ALGIAEMTTAVMATC
Sbjct: 286 LVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATC 345
Query: 372 DHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVL 431
DHGVVA+IKRVVMDRDTYPRKWGLGP+AS+KKKLI+EGKLDKHGK N+ TP EWARN+VL
Sbjct: 346 DHGVVAKIKRVVMDRDTYPRKWGLGPKASIKKKLISEGKLDKHGKPNDNTPHEWARNLVL 405
Query: 432 PPGGDSVVASLAAAAE 447
P GGDS+VA LAAAAE
Sbjct: 406 PAGGDSMVAGLAAAAE 421
>gi|449486954|ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
subunit 4-like [Cucumis sativus]
Length = 566
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/533 (73%), Positives = 433/533 (81%), Gaps = 40/533 (7%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTPLP+GY PLKRPL +YIRYGI+NL
Sbjct: 23 DFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNL 82
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV
Sbjct: 83 DKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 142
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CVARLH VPDV+KVARALE LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD D+HLV
Sbjct: 143 CVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLV 202
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFWISCEAGTYVRT+CVHLGLILGVGGHMQELRRVRSGILGE DNMVTMHDVMDAQW YD
Sbjct: 203 VFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWFYD 262
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE+YLRRVIMPLEV+LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI GEEVV
Sbjct: 263 NFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGAGEEVV 322
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+ALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKKKLI
Sbjct: 323 LMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG 382
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASL----AAAAEQTVAEKETA--GVKKR 461
EGKLDKHGK NE TPQEW RN+VLP GGD +VAS +A A+ T AE+ G +KR
Sbjct: 383 EGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATAKPTAAEESGKDDGGRKR 442
Query: 462 KLDASGDSPALNAKKAKV----------------------------EEVVEVEKEETVKV 493
KLD ++ A AKK K EE+VE K
Sbjct: 443 KLDE--ETEAAPAKKLKTEEVEXSREERKEEKKKDKEKDTAEEPSNEEIVE---NSEKKK 497
Query: 494 KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEV-VEKTEKVKAKKHKDKDE 545
++ + +++ + + ++K+KKDKE+G D+++ + +A H D E
Sbjct: 498 RRRTKKLKKQLHLRHQSPRRKEKKDKESGNDDSQLPAADVQNGEAHDHDDGSE 550
>gi|356525850|ref|XP_003531534.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
max]
Length = 555
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/559 (76%), Positives = 479/559 (85%), Gaps = 13/559 (2%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKPQSFTP IDTSQWPILLKNY+RLNVRTGHYTP+P+GYSPLKRPL +Y++YG++NLDK
Sbjct: 1 MIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLSEYLKYGVLNLDK 60
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
PANPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+
Sbjct: 61 PANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI 120
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
ARLH VPD++KV+RALE LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVF
Sbjct: 121 ARLHSAVPDISKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVF 180
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
WISCEAGTYVRTMCVHLGL+LGVG HMQELRRVRSGI+GE DNMV+MHDVMDAQW+YDNY
Sbjct: 181 WISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNY 240
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE YLRRV+MPLE+LLTSYKRLVVKD+ VNAICYGAK MIPGLLRFENDI+VGEEVVLM
Sbjct: 241 RDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLM 300
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+ALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKK+LI+EG
Sbjct: 301 TTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEG 360
Query: 410 KLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAE------QTVAEKETAGVKKRKL 463
KLDKHGK NEKTPQEW RN+VLP GGDS++A LAAA E Q E + G K++K
Sbjct: 361 KLDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGLAAAPEPEDDKLQKKEEGDGEGKKRKKH 420
Query: 464 DASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGG 523
+++ A+ AKKAKV + VE ++ K ++E E+EVEKKEKKKKKKKDKEN
Sbjct: 421 ESTDSLVAVPAKKAKVVDEVEELEKLEKVKVKKVDEETVEVEVEKKEKKKKKKKDKENSE 480
Query: 524 -ADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNG--ENVEA 580
A ++ + +K K +D GSPE +KSEKKKKKKKDK A + NG ++ A
Sbjct: 481 VASSDEEKTEKKKNKNKIED----GSPELDKSEKKKKKKKDKAAAAAAEISNGKVDDSNA 536
Query: 581 DKSEKKKKKKKKKKDAEEE 599
DKSEKKK KKKK KDA+EE
Sbjct: 537 DKSEKKKNKKKKNKDAKEE 555
>gi|449439649|ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial
[Cucumis sativus]
Length = 564
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/534 (75%), Positives = 444/534 (83%), Gaps = 19/534 (3%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTPLP+GY PLKRPL +YIRYGI+NL
Sbjct: 23 DFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNL 82
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV
Sbjct: 83 DKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 142
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CVARLH VPDV+KVARALE LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD D+HLV
Sbjct: 143 CVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLV 202
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFWISCEAGTYVRT+CVHLGLILGVGGHMQELRRVRSGILGE DNMVTMHDVMDAQW YD
Sbjct: 203 VFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWFYD 262
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE+YLRRVIMPLEV+LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI GEEVV
Sbjct: 263 NFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGAGEEVV 322
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+ALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKKKLI
Sbjct: 323 LMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIG 382
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
EGKLDKHGK NE TPQEW RN+VLP GGD +VAS A + K TA + K D
Sbjct: 383 EGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVAS--AFVSDSATAKPTAAEESGKDDG-- 438
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTE 527
+K K++E E + +K ++V+E +E + +KK+K+K ++ N E
Sbjct: 439 ------GRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDTAEEPSN----EE 488
Query: 528 VVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKK-----KDKEVEEAKGVDNGE 576
+VE +EK K KK K+ E +PET KSEKKKKKK D A V NGE
Sbjct: 489 IVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQNGE 542
>gi|297820502|ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp.
lyrata]
gi|297323972|gb|EFH54393.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp.
lyrata]
Length = 561
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/486 (80%), Positives = 428/486 (88%), Gaps = 26/486 (5%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSI 60
M EVE+S SEKKK K +NDAA DT D++IKPQSFTP+I
Sbjct: 1 MAEVEISHSEKKKQGK------TENDAA----DTG------------DYMIKPQSFTPAI 38
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTSQWPILLKNYD LNVRTGHYTP+ GYSPLKRPL +YIRYG+INLDKPANPSSHEVVA
Sbjct: 39 DTSQWPILLKNYDLLNVRTGHYTPISAGYSPLKRPLQEYIRYGVINLDKPANPSSHEVVA 98
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH VPDVA
Sbjct: 99 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVA 158
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVFW+SCEAGTY+R
Sbjct: 159 KVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIR 218
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
TMCVHLGL+LGVGGHMQELRRVRSGILGEN+NMVTMHDVMDAQ++YDN RDE+YLRRVIM
Sbjct: 219 TMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIM 278
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLE++LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEA+A+GI
Sbjct: 279 PLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGI 338
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
AEMTT+VMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKKKLIA+GKLDKHGK NEK
Sbjct: 339 AEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEK 398
Query: 421 TPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET--AG-VKKRKLDASGDSPA-LNAKK 476
TP EW+RNVVLP GGD+++A AAA + AE E AG V+KRK D S DSPA ++ KK
Sbjct: 399 TPVEWSRNVVLPTGGDAIIAGAAAAPVEIKAEAENGEAGEVRKRKHDDSSDSPAPVSTKK 458
Query: 477 AKVEEV 482
+K +EV
Sbjct: 459 SKTKEV 464
>gi|356554746|ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
max]
Length = 589
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/435 (82%), Positives = 386/435 (88%), Gaps = 22/435 (5%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
+IKPQSFTP IDTSQWPILLKNY+RLNVRTGHYTP+P+GYSPLKRPL +Y++YG++NLD
Sbjct: 33 LMIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLD 92
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KPANPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 93 KPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 152
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPP---------LISAVKRQLRIRTIYESKLLE 219
+ARLH VPDV+KVARALE LTGAVFQRPP RIRTIYESKLLE
Sbjct: 153 IARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQL---------RIRTIYESKLLE 203
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
YD DRHLVVFWISCEAGTYVRTMCVHLGL+LGVG HMQELRRVRSGI+GE DNMV+MHDV
Sbjct: 204 YDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDV 263
Query: 280 MDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEND 339
MDAQW+YDNYRDE YLRRV+MPLE+LLTSYKRLVVKD+ VNAICYGAK MIPGLLRFEND
Sbjct: 264 MDAQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFEND 323
Query: 340 IEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRA 399
I+VGEEVVLMTTKGEA+ALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRA
Sbjct: 324 IDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA 383
Query: 400 SMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAE---QTVAEKETA 456
SMKK+LI+EGKLDKHGK NEKTPQEW RN+VLP GGDSV+A LAAA E + +KE
Sbjct: 384 SMKKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEPEDDKIQKKEGD 443
Query: 457 G-VKKRKLDASGDSP 470
G KKRK S DSP
Sbjct: 444 GEGKKRKKHESTDSP 458
>gi|308080175|ref|NP_001183905.1| uncharacterized protein LOC100502498 [Zea mays]
gi|238015364|gb|ACR38717.1| unknown [Zea mays]
gi|413947018|gb|AFW79667.1| hypothetical protein ZEAMMB73_071792 [Zea mays]
Length = 583
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/468 (77%), Positives = 397/468 (84%), Gaps = 23/468 (4%)
Query: 40 DDNNATAKD-------------FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLP 86
DD +A A D ++IKPQS PS+DTS WP+LLKNYDRLNVRTGHYTPLP
Sbjct: 27 DDPSAAAADPPSLAEAEEKTDGYLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLP 86
Query: 87 NGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 146
+G+SPLKRPL +++RYGIINLDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI
Sbjct: 87 SGHSPLKRPLAEHLRYGIINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 146
Query: 147 VCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ 206
VCIDRATRLVKSQQGAGKEYVCVAR H VPD A+VARALEALTGAVFQRPPLISAVKRQ
Sbjct: 147 VCIDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQ 206
Query: 207 LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGI 266
LR+RTIYESKLLE+D +RHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGI
Sbjct: 207 LRVRTIYESKLLEHDPERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGI 266
Query: 267 LGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGA 326
LGE DNMVTMHDVMDA W DNY+DE+YLRRV+MPLEVLLTSYKRLVVKD+ VNAICYGA
Sbjct: 267 LGEQDNMVTMHDVMDAMWSLDNYKDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGA 326
Query: 327 KLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDR 386
KLMIPGLLRFENDIE GEEVVLMTTKGEA+A+GIAEMTTAVMATCDHG V++IKRVVMDR
Sbjct: 327 KLMIPGLLRFENDIETGEEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVSKIKRVVMDR 386
Query: 387 DTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAA 446
DTYPRKWGLGP A KKKL+AEG LDKHGK NEKTP EW RNVVLP GGD +AS+AAA
Sbjct: 387 DTYPRKWGLGPVALKKKKLVAEGLLDKHGKPNEKTPTEWLRNVVLPTGGDVSIASIAAAP 446
Query: 447 E---------QTVAEKETAGVKKRKLDASGDSPA-LNAKKAKVEEVVE 484
E V E+ KKR+ D + D+ A + AKK KVEE E
Sbjct: 447 EPEKVKVEPDTAVTEEVKEKKKKRQKDDAEDTDASVPAKKIKVEEATE 494
>gi|357136276|ref|XP_003569731.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Brachypodium distachyon]
Length = 591
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/496 (74%), Positives = 414/496 (83%), Gaps = 25/496 (5%)
Query: 5 ELSRSEKKKHKKKSASAD--AKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDT 62
EL++S+KKK K K ASAD A +D +L A D ++IKPQS PS+DT
Sbjct: 14 ELTKSKKKKSKSKDASADPAAGDDNPSLAEAEAKTDG---------YMIKPQSLVPSLDT 64
Query: 63 SQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWI 122
S WP+LLKNYDRLNVRTGHYTPLP+G+SPLKRPL +Y+RYG+INLDKP+NPSSHEVVAWI
Sbjct: 65 STWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPLQEYLRYGVINLDKPSNPSSHEVVAWI 124
Query: 123 KRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKV 182
KR+LRVEKTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAGKEYVC+AR H VPD A+V
Sbjct: 125 KRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCIARFHAAVPDTARV 184
Query: 183 ARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTM 242
ARALE+LTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D +RHL VFWISCEAGTYVRT+
Sbjct: 185 ARALESLTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDAERHLAVFWISCEAGTYVRTL 244
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
CVHLGL+LGVG HMQELRRVRSGILGE DNMVTMHDVMD+ W DN++DE+Y+RRV+MPL
Sbjct: 245 CVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTMHDVMDSMWALDNHKDESYIRRVVMPL 304
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362
EV+LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI+VGEEVVLMTTKGEA+A+GIAE
Sbjct: 305 EVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAE 364
Query: 363 MTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTP 422
M TAVMATCDHG VA+IKRVVMDRDTYPRKWGLGP A KKK+IAEG LDKHGK EKTP
Sbjct: 365 MPTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMIAEGLLDKHGKPTEKTP 424
Query: 423 QEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVK--------------KRKLDASGD 468
EW RNVVLP GGD+++AS+AAA E + E A VK KRK+D
Sbjct: 425 AEWLRNVVLPTGGDAMIASIAAAPEPEKVKVEQADVKEKNKHEEDKADGGRKRKVDEDDA 484
Query: 469 SPALNAKKAKVEEVVE 484
S + AKK K EEV+E
Sbjct: 485 SASTPAKKIKSEEVIE 500
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/509 (63%), Positives = 373/509 (73%), Gaps = 68/509 (13%)
Query: 22 DAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGH 81
DA D AA + + A+A+ A ++IKPQS PS+DTS WP+LLKNYDRLNVRTGH
Sbjct: 27 DASADPAAGDDNPSLAEAE---AKTDGYMIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGH 83
Query: 82 YTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKV 141
YTPLP+G+SPLKRPL +Y+RYG+INLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKV
Sbjct: 84 YTPLPSGHSPLKRPLQEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKV 143
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TGNLIVC+DRATRLVKSQQGAGKEYVC+AR H VPD A+VARALE+LTGAVFQRPPLIS
Sbjct: 144 TGNLIVCVDRATRLVKSQQGAGKEYVCIARFHAAVPDTARVARALESLTGAVFQRPPLIS 203
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RTIYESKLLE+D +RHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRR
Sbjct: 204 AVKRQLRVRTIYESKLLEHDAERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRR 263
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGILGE DNMVTMHDVMD+ W DN++DE+Y+RRV+MPLEV+LTSYKRLVVKD+ VNA
Sbjct: 264 VRSGILGEQDNMVTMHDVMDSMWALDNHKDESYIRRVVMPLEVILTSYKRLVVKDSAVNA 323
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
ICYGAKLMIPGLLRFENDI+VGEEVVLMTTKGEA+A+GIAEM TAVMATCDHG VA+IKR
Sbjct: 324 ICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMPTAVMATCDHGAVAKIKR 383
Query: 382 VVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVAS 441
VVMDRDTY P++W V
Sbjct: 384 VVMDRDTY--------------------------------PRKWGLGPV----------- 400
Query: 442 LAAAAEQTVAEKETAGVKKRKLDASG-----DSPALNAKKAKVEEVVEVEKEETVKVKKV 496
+KK+K+ A G P + VV + +
Sbjct: 401 ---------------ALKKKKMIAEGLLDKHGKPTEKTPAEWLRNVVLPTGGDAMIASIA 445
Query: 497 KEDEAEEIEVEKKEKKKKKK--KDKENGG 523
E E+++VE+ + K+K K +DK +GG
Sbjct: 446 AAPEPEKVKVEQADVKEKNKHEEDKADGG 474
>gi|115473585|ref|NP_001060391.1| Os07g0636000 [Oryza sativa Japonica Group]
gi|23237811|dbj|BAC16386.1| putative centromere/microtubule binding protein [Oryza sativa
Japonica Group]
gi|113611927|dbj|BAF22305.1| Os07g0636000 [Oryza sativa Japonica Group]
gi|125559298|gb|EAZ04834.1| hypothetical protein OsI_27012 [Oryza sativa Indica Group]
gi|125601221|gb|EAZ40797.1| hypothetical protein OsJ_25275 [Oryza sativa Japonica Group]
gi|215734843|dbj|BAG95565.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 600
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/427 (80%), Positives = 382/427 (89%), Gaps = 5/427 (1%)
Query: 22 DAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGH 81
DA AA A+A+A + ++IKPQS PS+DTS WP+LLKNYDRLNVRTGH
Sbjct: 28 DAATAAAVDPPSLAEAEAKTDG-----YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGH 82
Query: 82 YTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKV 141
YTPLP+G+SPLKRP+ +Y+RYG+INLDKP+NPSSHEVVAWIKR+LRV+KTGHSGTLDPKV
Sbjct: 83 YTPLPSGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVDKTGHSGTLDPKV 142
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TGNLIVC+DRATRLVKSQQGAGKEYVCVAR H VPD A+VARALEALTGAVFQRPPLIS
Sbjct: 143 TGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALTGAVFQRPPLIS 202
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RTIYESKLLE+D DRHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRR
Sbjct: 203 AVKRQLRVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRR 262
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGILGE DNMVTMHDVMDA+W DNY DE YLRR++MPLEVLLTSYKRLVVKD+ VNA
Sbjct: 263 VRSGILGEQDNMVTMHDVMDARWAMDNYNDETYLRRIVMPLEVLLTSYKRLVVKDSAVNA 322
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
ICYGAKLMIPGLLRFENDI+VGEEVVLMTTKGEA+A+GIAEMTTAVMATCDHG VA+IKR
Sbjct: 323 ICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKR 382
Query: 382 VVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVAS 441
VVMDRDTYPRKWGLGP A KKK++AEG LDKHGK NEKTP EW RNV LP GGD+++AS
Sbjct: 383 VVMDRDTYPRKWGLGPVALKKKKMVAEGLLDKHGKPNEKTPAEWIRNVALPTGGDAMIAS 442
Query: 442 LAAAAEQ 448
+AAA E+
Sbjct: 443 IAAAPEE 449
>gi|414876855|tpg|DAA53986.1| TPA: hypothetical protein ZEAMMB73_001838 [Zea mays]
Length = 579
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/441 (80%), Positives = 388/441 (87%), Gaps = 11/441 (2%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKPQS PS+DTS WP+LLKNYDRLNVRTGHYTPLP+G+SPLKRPL +++RYG+INLD
Sbjct: 47 YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLD 106
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 107 KPSNPSSHEVVAWIKRILRAEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 166
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
VAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D +RHL V
Sbjct: 167 VARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDPERHLAV 226
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGILGE DNMVTMHDVMDA W DN
Sbjct: 227 FWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTMHDVMDAMWSLDN 286
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
Y+DE+YLRRV+MPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDIE GEEVVL
Sbjct: 287 YKDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIETGEEVVL 346
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+GIAEMTTAVMATCDHG VA+IKRVVMDRDTYPRKWGLGP A KKKL+AE
Sbjct: 347 MTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKLVAE 406
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAE--QTVAEKETAGV-------- 458
G LDKHGK NEKTP EW RNVVLP GGD +AS+AAA E + E++TA
Sbjct: 407 GLLDKHGKPNEKTPAEWLRNVVLPTGGDVSIASIAAAPEPEKVKVEQDTAVTEEVKENKK 466
Query: 459 KKRKLDASGDSPA-LNAKKAK 478
K+RK D D+ A + AKK K
Sbjct: 467 KRRKDDEDNDADASIPAKKIK 487
>gi|326525859|dbj|BAJ93106.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 605
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/469 (75%), Positives = 397/469 (84%), Gaps = 20/469 (4%)
Query: 28 AALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPN 87
AA TT ADA+A + ++IKPQ+ PS+DTS WP+LLKNYDRLNVRTGHYTPLP+
Sbjct: 33 AADTTSLADAEAKTDG-----YMIKPQALVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPS 87
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+SPLKRPL +Y+RYG+INLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLIV
Sbjct: 88 GHSPLKRPLAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIV 147
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
C+DRATRLVKSQQGAGKEYVC+AR H VPD A+VARALE+LTGAVFQRPPLISAVKRQL
Sbjct: 148 CVDRATRLVKSQQGAGKEYVCIARFHAAVPDTARVARALESLTGAVFQRPPLISAVKRQL 207
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIYESKLLE+D +RHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGIL
Sbjct: 208 RVRTIYESKLLEHDAERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGIL 267
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
GE DNMVTMHDVMDA W DN++DE+Y+RRV+MPLEV+LTSYKRLVVKD+ VNAICYGAK
Sbjct: 268 GEQDNMVTMHDVMDAMWALDNHKDESYIRRVVMPLEVILTSYKRLVVKDSAVNAICYGAK 327
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
LMIPGLLRFENDI+VGEEVVLMTTKGEA+A+GIAEM TAVMATCDHG VA+IKRVVMDRD
Sbjct: 328 LMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMPTAVMATCDHGAVAKIKRVVMDRD 387
Query: 388 TYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAE 447
TYPRKWGLGP A KKK+IAEG LDKHGK +KTP EW RNVVLP GGD+++ASLAAA E
Sbjct: 388 TYPRKWGLGPVALKKKKMIAEGLLDKHGKPTDKTPAEWLRNVVLPTGGDAMIASLAAAPE 447
Query: 448 QTVAEKETAGVKKRKL------------DASGDSPALNAKKAKVEEVVE 484
+ E V + D + +P AKK K EEV E
Sbjct: 448 PEKVKAEQQNVVPSEEVKEKKKRKSDEDDITASTP---AKKIKAEEVTE 493
>gi|15230232|ref|NP_191274.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=CBF5 homolog; AltName: Full=Dyskerin; AltName:
Full=Nopp-140-associated protein of 57 kDa homolog;
Short=AtNAP57; AltName: Full=Nucleolar protein NAP57
homolog
gi|8901186|gb|AAF43210.2|AF234984_1 putative pseudouridine synthase [Arabidopsis thaliana]
gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis thaliana]
gi|28392852|gb|AAO41863.1| unknown protein [Arabidopsis thaliana]
gi|225898727|dbj|BAH30494.1| hypothetical protein [Arabidopsis thaliana]
gi|332646100|gb|AEE79621.1| H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana]
Length = 565
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/482 (80%), Positives = 425/482 (88%), Gaps = 26/482 (5%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSI 60
M EV++S S+KKK K +NDAA DT D++IKPQSFTP+I
Sbjct: 1 MAEVDISHSKKKKQDK------TENDAA----DTG------------DYMIKPQSFTPAI 38
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTSQWPILLKNYDRLNVRTGHYTP+ G+SPLKRPL +YIRYG+INLDKPANPSSHEVVA
Sbjct: 39 DTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVA 98
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH VPDVA
Sbjct: 99 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVA 158
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVFW+SCEAGTY+R
Sbjct: 159 KVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIR 218
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
TMCVHLGL+LGVGGHMQELRRVRSGILGEN+NMVTMHDVMDAQ++YDN RDE+YLRRVIM
Sbjct: 219 TMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIM 278
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLE++LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEA+A+GI
Sbjct: 279 PLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGI 338
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
AEMTT+VMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKKKLIA+GKLDKHGK NEK
Sbjct: 339 AEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEK 398
Query: 421 TPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET--AG-VKKRKLDASGDSPA-LNAKK 476
TP EW+RNVVLP GGD+++A AAA E+ A+ E AG +KRK D S DSPA + KK
Sbjct: 399 TPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKK 458
Query: 477 AK 478
+K
Sbjct: 459 SK 460
>gi|115453197|ref|NP_001050199.1| Os03g0370500 [Oryza sativa Japonica Group]
gi|12039350|gb|AAG46137.1|AC082644_19 putative centromere/microtubule binding protein [Oryza sativa
Japonica Group]
gi|108708379|gb|ABF96174.1| H/ACA ribonucleoprotein complex subunit 4, putative, expressed
[Oryza sativa Japonica Group]
gi|113548670|dbj|BAF12113.1| Os03g0370500 [Oryza sativa Japonica Group]
gi|215693252|dbj|BAG88634.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 591
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/472 (75%), Positives = 403/472 (85%), Gaps = 14/472 (2%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
A A ++IKPQS P +DTS WP+LLKNYDRLNVRTGHYTPLP G+SPLKRP+ +Y+RYG
Sbjct: 49 AKADGYLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYG 108
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAG
Sbjct: 109 VINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAG 168
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVCVAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D D
Sbjct: 169 KEYVCVARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDAD 228
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGILGE DNMVTMHDVMDA+
Sbjct: 229 RHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGETDNMVTMHDVMDAR 288
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
W DN+ DE+YLRR++MPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFEN+IEVG
Sbjct: 289 WAMDNFNDESYLRRIVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEVG 348
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
EEVVLMTTKGEA+A+GIAEMTTAVMATCDHG VA+IKRVVMDRDTYPRKWGLGP A KK
Sbjct: 349 EEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKK 408
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAE---------QTVAEKE 454
K++AEG LDKHGK NEKTP EW RN VLP GGD+++A +AAA E VAE+
Sbjct: 409 KMVAEGLLDKHGKPNEKTPSEWLRNAVLPAGGDAMIAGIAAAPEPEKPKVKEEADVAEET 468
Query: 455 TAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVK-EDEAEEIE 505
KK+ D +GD NA + + +V + + +V KK+K E+EA+ +E
Sbjct: 469 KEKKKKKHKDWAGD----NADEGRKRKVGDDDLSASVSAKKIKVEEEADAVE 516
>gi|326513743|dbj|BAJ87890.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 605
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/469 (75%), Positives = 397/469 (84%), Gaps = 20/469 (4%)
Query: 28 AALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPN 87
AA TT ADA+A + ++IKPQ+ PS+DTS WP+LLKNYDRLNVRTGHYTPLP+
Sbjct: 33 AADTTSLADAEAKTDG-----YMIKPQALVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPS 87
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+SPLKRPL +Y+RYG+INLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLIV
Sbjct: 88 GHSPLKRPLAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIV 147
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
C+DRATRLVKSQQGAGKEYVC+AR H VPD A+VARALE+LTGAVFQRPPLISAVKRQL
Sbjct: 148 CVDRATRLVKSQQGAGKEYVCIARFHAAVPDTARVARALESLTGAVFQRPPLISAVKRQL 207
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIYESKLLE+D +RHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGIL
Sbjct: 208 RVRTIYESKLLEHDAERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGIL 267
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
GE DNMVTMHDVMDA W DN++DE+Y+RRV+MPLEV+LTSYKRLVVKD+ VNAICYGAK
Sbjct: 268 GEQDNMVTMHDVMDAMWALDNHKDESYIRRVVMPLEVILTSYKRLVVKDSAVNAICYGAK 327
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
LMIPGLLRFENDI+VGEEVVLMTTKGEA+A+GIAEM TAVMATCDHG VA+IKRVVMDRD
Sbjct: 328 LMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMPTAVMATCDHGAVAKIKRVVMDRD 387
Query: 388 TYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAE 447
TYPRKWGLGP A KKK+IAEG LDKHGK +K P EW RNVVLP GGD+++ASLAAA E
Sbjct: 388 TYPRKWGLGPVALKKKKMIAEGLLDKHGKPTDKMPAEWLRNVVLPTGGDAMIASLAAAPE 447
Query: 448 QTVAEKETAGVKKRKL------------DASGDSPALNAKKAKVEEVVE 484
+ E V + D + +P AKK KVEEV E
Sbjct: 448 PEKVKVEQQDVVPSEEVKEKKKRKNDEDDVTASTP---AKKMKVEEVTE 493
>gi|357160222|ref|XP_003578695.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Brachypodium distachyon]
Length = 584
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/540 (71%), Positives = 435/540 (80%), Gaps = 30/540 (5%)
Query: 34 TADADADDNN-------ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLP 86
+AD A DNN A ++IKPQS PS+DTS WP LLKNYDRLNVRTGHYTPLP
Sbjct: 29 SADPAAGDNNPSLAEAEAKTDGYMIKPQSLVPSLDTSTWPFLLKNYDRLNVRTGHYTPLP 88
Query: 87 NGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 146
+G+SPLKRPL +Y+RYG+INLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLI
Sbjct: 89 SGHSPLKRPLQEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLI 148
Query: 147 VCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ 206
VC+DRATRLVKSQQGAGKEYVC+AR H VP+ A+VARALE+LTGAVFQRPPLISAVKRQ
Sbjct: 149 VCVDRATRLVKSQQGAGKEYVCIARFHAAVPNTARVARALESLTGAVFQRPPLISAVKRQ 208
Query: 207 LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGI 266
LR+RTIYESKLLE+D +RHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGI
Sbjct: 209 LRVRTIYESKLLEHDPERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGI 268
Query: 267 LGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGA 326
LGE DNMVTMHDVMD+ W DN++DE+Y+RRV+MPLEV+LTSYKRLVVKD+ VNAICYGA
Sbjct: 269 LGEQDNMVTMHDVMDSMWALDNHKDESYIRRVVMPLEVILTSYKRLVVKDSAVNAICYGA 328
Query: 327 KLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDR 386
KLMIPGLLRFENDI+VGEEVVLMTTKGEA+A+GIAEM TAVMATCDHG VA+IKRVVMDR
Sbjct: 329 KLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMPTAVMATCDHGAVAKIKRVVMDR 388
Query: 387 DTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAA 446
DTYPRKWGLGP A KKK+IAEG LDKHGK EKTP EW RNV LP GGD+++AS+AAA
Sbjct: 389 DTYPRKWGLGPVALKKKKMIAEGLLDKHGKPTEKTPAEWLRNVALPTGGDAMIASIAAAP 448
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDE-AEEIE 505
E + E A VK + D A +K K+ VV E+ KKVK +E E +E
Sbjct: 449 EPEKVKVEQADVKDEEEDK-----ADGGRKRKI--VVS----ESTPAKKVKSEEVTEAVE 497
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
EK EKKKKKK E G A +E V K+K ++ E SEKKKKKKK+KE
Sbjct: 498 GEKSEKKKKKKDKGEPGSAVSEAV-----------KEKGDLSDQEMGGSEKKKKKKKNKE 546
>gi|414887790|tpg|DAA63804.1| TPA: hypothetical protein ZEAMMB73_356063 [Zea mays]
Length = 575
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/535 (69%), Positives = 420/535 (78%), Gaps = 28/535 (5%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKPQS PS+DTS WP+LLKNYDRLNVRTGHYTPLP+G+SPLKRPL +++RYG+INLD
Sbjct: 46 YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLD 105
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAGKEYVC
Sbjct: 106 KPSNPSSHEVVAWIKRILRAEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVC 165
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
VAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D +RHL V
Sbjct: 166 VARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDPERHLAV 225
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGILGE DNMVTMHDVMDA W DN
Sbjct: 226 FWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTMHDVMDAMWSLDN 285
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+YLRRV+MPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDIE GEEVVL
Sbjct: 286 HKDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIETGEEVVL 345
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+GIAEMTTAVMATCDHG VA+IKRVVMDRDTYPRKWGLGP A KKK++AE
Sbjct: 346 MTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMVAE 405
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQT---VAEKETAGVK------ 459
G LDKHGK NEKTP EW RNVVLP GGD +AS+AAA E V + AG K
Sbjct: 406 GLLDKHGKPNEKTPAEWLRNVVLPTGGDVSIASIAAAPEPEKVKVEQDAVAGEKVKEKKK 465
Query: 460 -KRKLDASGDSPALNAKKAKVEEVVEVEKEE----------TVKVKKVKEDEAEEIEVEK 508
+++ + +GD ++ AKK KVEE EV + E KV+ D AE EVEK
Sbjct: 466 KRQQDENNGDDASVPAKKIKVEEDAEVVEGEGDKSEKKKKKKEKVESESADAAEAKEVEK 525
Query: 509 KEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
+ + ++ A+ + D G +K KKK++
Sbjct: 526 ADDAADETGSEKKK-KKKSKEGSAAAADAESAEHADGAGV-------EKSKKKRE 572
>gi|242051008|ref|XP_002463248.1| hypothetical protein SORBIDRAFT_02g040540 [Sorghum bicolor]
gi|241926625|gb|EER99769.1| hypothetical protein SORBIDRAFT_02g040540 [Sorghum bicolor]
Length = 586
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/442 (79%), Positives = 385/442 (87%), Gaps = 12/442 (2%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKPQS PS+DTS WP+LLKNYDRLNVRTGHYTPLP+G+SPLKRPL +++RYG+INLD
Sbjct: 47 YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLD 106
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAGKEYVC
Sbjct: 107 KPSNPSSHEVVAWIKRILRAEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVC 166
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
VAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D +RHL V
Sbjct: 167 VARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDPERHLAV 226
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGILGE DNMVTMHDVMDA W DN
Sbjct: 227 FWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTMHDVMDAMWSLDN 286
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
Y+DE+YLRRV+MPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDIE GEEVVL
Sbjct: 287 YKDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIETGEEVVL 346
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+GIAEMTTAVMATCDHG VA+IKRVVMDRDTYPRKWGLGP A KKK+IAE
Sbjct: 347 MTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMIAE 406
Query: 409 GKLDKHGKLNEKTPQEWARNV--VLPPGGDSVVASLAAAAEQTVAEKETAGV-------- 458
G LDKHGK NEKTP EW RNV VLP GGD +AS+AAA E + E V
Sbjct: 407 GLLDKHGKPNEKTPAEWLRNVEVVLPTGGDVSIASIAAAPEPEKVKVEQDAVIHEEVKEK 466
Query: 459 --KKRKLDASGDSPALNAKKAK 478
K++K + + D ++ AKK K
Sbjct: 467 KKKRQKDENNDDDASVPAKKIK 488
>gi|242056883|ref|XP_002457587.1| hypothetical protein SORBIDRAFT_03g009870 [Sorghum bicolor]
gi|241929562|gb|EES02707.1| hypothetical protein SORBIDRAFT_03g009870 [Sorghum bicolor]
Length = 584
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/452 (76%), Positives = 376/452 (83%), Gaps = 45/452 (9%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKPQS PS+DTS WP+LLKNYDRLNVRTGHYTPLP+G+SPLKRPL +++RYG+INLD
Sbjct: 50 YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLD 109
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 110 KPSNPSSHEVVAWIKRILRAEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 169
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
VAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D +RHL V
Sbjct: 170 VARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDPERHLAV 229
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGILGE DNMVTMHDVMDA W DN
Sbjct: 230 FWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTMHDVMDAMWSLDN 289
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
Y+DE+YLRRV+MPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDIE GEEVVL
Sbjct: 290 YKDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIETGEEVVL 349
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+G+AEMTTAVMATCDHG VA+IKRVVMDRDTYPRKWGLGP A KKKLIAE
Sbjct: 350 MTTKGEAIAIGVAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKLIAE 409
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
G LDKHGK NEKTP EW RNVVLP GGD +AS+AAA E
Sbjct: 410 GLLDKHGKPNEKTPTEWLRNVVLPTGGDVSIASIAAAPEP-------------------- 449
Query: 469 SPALNAKKAKVEEVVEVEKEETVKVKKVKEDE 500
+KAKVE +
Sbjct: 450 ------EKAKVE-------------------Q 456
>gi|218192913|gb|EEC75340.1| hypothetical protein OsI_11751 [Oryza sativa Indica Group]
Length = 535
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/472 (72%), Positives = 387/472 (81%), Gaps = 31/472 (6%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
A A ++IKPQS P +DTS WP+LLKNYDRLN RP+ +Y+RYG
Sbjct: 49 AKADGYLIKPQSVAPPLDTSAWPLLLKNYDRLN-----------------RPIAEYLRYG 91
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAG
Sbjct: 92 VINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAG 151
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVCVAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D D
Sbjct: 152 KEYVCVARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDAD 211
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGILGE DNMVTMHDVMDA+
Sbjct: 212 RHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGETDNMVTMHDVMDAR 271
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
W DN+ DE+YLRR++MPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFEN+IEVG
Sbjct: 272 WAMDNFNDESYLRRIVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEVG 331
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
EEVVLMTTKGEA+A+GIAEMTTAVMATCDHG VA+IKRVVMDRDTYPRKWGLGP A KK
Sbjct: 332 EEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKK 391
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAA---------EQTVAEKE 454
K++AEG LDKHGK NEKTP EW RN VLP GGD+++A +AAA E VAE+
Sbjct: 392 KMVAEGLLDKHGKPNEKTPSEWLRNAVLPAGGDAMIAGIAAAPEPEKPKVKEEADVAEET 451
Query: 455 TAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVK-EDEAEEIE 505
KK+ D +GD NA + + +V + + +V KK+K E+EA+ +E
Sbjct: 452 KEKKKKKHKDCAGD----NADEGRKRKVGDDDLSASVSAKKIKVEEEADAVE 499
>gi|168053355|ref|XP_001779102.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669462|gb|EDQ56048.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 544
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/419 (78%), Positives = 372/419 (88%), Gaps = 6/419 (1%)
Query: 9 SEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPIL 68
S+KK+ K DA+ L DA N D++IKPQS TP +DTS+WPIL
Sbjct: 6 SKKKRKDKHREVEDAEGQRVVL------GDAPSNEQADTDYLIKPQSTTPPLDTSKWPIL 59
Query: 69 LKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRV 128
LKNYD+LNVRTGHYTPLP G++PLKRPL DY+RYG+INLDKPANPSSHEVVAWI+R+LRV
Sbjct: 60 LKNYDKLNVRTGHYTPLPTGHTPLKRPLHDYVRYGVINLDKPANPSSHEVVAWIRRMLRV 119
Query: 129 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEA 188
+KTGHSGTLDPKVTG+LIVC+DRATRLVK+QQGAGKEYVCVARLH V VAKVA+A+E
Sbjct: 120 DKTGHSGTLDPKVTGSLIVCVDRATRLVKAQQGAGKEYVCVARLHSAVESVAKVAQAIET 179
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
LTGA+FQRPPLISAVKRQLRIRTIYESKLLEYD +RHLVVFW+SCEAGTY+RT+CVHLGL
Sbjct: 180 LTGALFQRPPLISAVKRQLRIRTIYESKLLEYDAERHLVVFWVSCEAGTYIRTLCVHLGL 239
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LGVGGHMQELRRVRSGILGE DN+VTMHDV+DAQW+YDN++DE+YLRRVIMPLEVLLTS
Sbjct: 240 LLGVGGHMQELRRVRSGILGEKDNLVTMHDVLDAQWVYDNHKDESYLRRVIMPLEVLLTS 299
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVM 368
YKR VVKD+ VNAICYGAKLMIPGLLR+E IEVGEEVVLMTTKGEA+ALGIA+MTTAVM
Sbjct: 300 YKRCVVKDSAVNAICYGAKLMIPGLLRYEQGIEVGEEVVLMTTKGEAIALGIAQMTTAVM 359
Query: 369 ATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWAR 427
ATCDHGVVA++KRVVM+RDTYPRKWGLGPRA KKK+I++G LDKHGK NEKTP EW R
Sbjct: 360 ATCDHGVVAKVKRVVMERDTYPRKWGLGPRAMTKKKMISDGLLDKHGKPNEKTPAEWLR 418
>gi|168053405|ref|XP_001779127.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669487|gb|EDQ56073.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 475
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/422 (78%), Positives = 373/422 (88%), Gaps = 6/422 (1%)
Query: 7 SRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWP 66
+ S+KK+ K DA+ L DA N D++IKPQS TP +DTS+WP
Sbjct: 4 TESKKKRKDKHREVEDAEGQQVVL------GDAPSNEQADTDYLIKPQSTTPPLDTSKWP 57
Query: 67 ILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL 126
ILLKNYD+LNVRTGHYTPLP G++PLKRPL DY+RYG+INLDKPANPSSHEVVAWI+R+L
Sbjct: 58 ILLKNYDKLNVRTGHYTPLPTGHTPLKRPLHDYVRYGVINLDKPANPSSHEVVAWIRRML 117
Query: 127 RVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARAL 186
RV+KTGHSGTLDPKVTG+LIVC+DRATRLVK+QQGAGKEYVCVARLH V VAKVA+A+
Sbjct: 118 RVDKTGHSGTLDPKVTGSLIVCVDRATRLVKAQQGAGKEYVCVARLHSAVESVAKVAQAI 177
Query: 187 EALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHL 246
E LTGA+FQRPPLISAVKRQLRIRTIYESKLLEYD +RHLVVFW+SCEAGTY+RT+CVHL
Sbjct: 178 ETLTGALFQRPPLISAVKRQLRIRTIYESKLLEYDAERHLVVFWVSCEAGTYIRTLCVHL 237
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
GL+LGVGGHMQELRRVRSGILGE DN+VTMHDV+DAQW+YDN++DE+YLRRVIMPLEVLL
Sbjct: 238 GLLLGVGGHMQELRRVRSGILGEKDNLVTMHDVLDAQWVYDNHKDESYLRRVIMPLEVLL 297
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
TSYKR VVKD+ VNAICYGAKLMIPGLLR+E IEVGEEVVLMTTKGEA+ALGIA+MTTA
Sbjct: 298 TSYKRCVVKDSAVNAICYGAKLMIPGLLRYEQGIEVGEEVVLMTTKGEAIALGIAQMTTA 357
Query: 367 VMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWA 426
VMATCDHGVVA++KRVVM+RDTYPRKWGLGPRA KKK+I++G LDKHGK NEKTP EW
Sbjct: 358 VMATCDHGVVAKVKRVVMERDTYPRKWGLGPRAMTKKKMISDGLLDKHGKPNEKTPAEWL 417
Query: 427 RN 428
R
Sbjct: 418 RG 419
>gi|302761338|ref|XP_002964091.1| hypothetical protein SELMODRAFT_81986 [Selaginella moellendorffii]
gi|300167820|gb|EFJ34424.1| hypothetical protein SELMODRAFT_81986 [Selaginella moellendorffii]
Length = 530
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/419 (76%), Positives = 369/419 (88%), Gaps = 1/419 (0%)
Query: 10 EKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILL 69
EKKK K+ L + A D A D++IKPQSF PS+DTS+WP+LL
Sbjct: 5 EKKKRKRSKGEEVVAVAHGELGGASGAASLGDAQA-GTDYLIKPQSFVPSLDTSKWPLLL 63
Query: 70 KNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVE 129
KNYD LNVRTGHYTPLP G++PLKRPL DY+RYG+INLDKP+NPSSHEVVAWIKRILRV+
Sbjct: 64 KNYDALNVRTGHYTPLPTGFTPLKRPLFDYVRYGVINLDKPSNPSSHEVVAWIKRILRVD 123
Query: 130 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEAL 189
KTGHSGTLDPKVTG+LIVC+DRATRLVK+QQGAGK+YVCVARLH V DVAKVAR LE L
Sbjct: 124 KTGHSGTLDPKVTGSLIVCVDRATRLVKAQQGAGKQYVCVARLHSAVEDVAKVARGLETL 183
Query: 190 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
TGA+FQRPPLISAVKRQLR+RTIY+SKLLE+D D+HLVVFW+ CEAGTY+RT+CVHLGL+
Sbjct: 184 TGALFQRPPLISAVKRQLRVRTIYQSKLLEFDADKHLVVFWVECEAGTYIRTLCVHLGLL 243
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LGVGGHMQELRRV+SGILGE DN+VTMHDV+DAQW+YDNY+DE+YLRRVIMPLEVLLT+Y
Sbjct: 244 LGVGGHMQELRRVQSGILGEKDNLVTMHDVLDAQWVYDNYKDESYLRRVIMPLEVLLTNY 303
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
R+VVKD+ VNAICYGAKLMIPGLLRF++ + VG EVVLMTTKGEA+ALGIA+M+T+ MA
Sbjct: 304 PRIVVKDSAVNAICYGAKLMIPGLLRFDSKVGVGTEVVLMTTKGEAIALGIAQMSTSDMA 363
Query: 370 TCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
TCDHGVVA++KRVVM+RDTYPRKWGLGPRAS KK++IA G LDKHGK NEKTPQEW RN
Sbjct: 364 TCDHGVVAKVKRVVMERDTYPRKWGLGPRASAKKQMIASGLLDKHGKPNEKTPQEWLRN 422
>gi|302787318|ref|XP_002975429.1| hypothetical protein SELMODRAFT_232501 [Selaginella moellendorffii]
gi|300157003|gb|EFJ23630.1| hypothetical protein SELMODRAFT_232501 [Selaginella moellendorffii]
Length = 489
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/383 (81%), Positives = 359/383 (93%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ D++IKPQSF PS+DTS+WP+LLKNYD LNVRTGHYTPLP G++PLKRPL DY+RYG+I
Sbjct: 2 STDYLIKPQSFVPSLDTSKWPLLLKNYDALNVRTGHYTPLPTGFTPLKRPLFDYVRYGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILRV+KTGHSGTLDPKVTG+LIVC+DRATRLVK+QQGAGK+
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGSLIVCVDRATRLVKAQQGAGKQ 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVCVARLH V DVAKVAR LE LTGA+FQRPPLISAVKRQLR+RTIY+SKLLE+D D+H
Sbjct: 122 YVCVARLHSAVEDVAKVARGLETLTGALFQRPPLISAVKRQLRVRTIYQSKLLEFDADKH 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
LVVFW+ CEAGTY+RT+CVHLGL+LGVGGHMQELRRV+SGILGE DN+VTMHDV+DAQW+
Sbjct: 182 LVVFWVECEAGTYIRTLCVHLGLLLGVGGHMQELRRVQSGILGEKDNLVTMHDVLDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDNY+DE+YLRRVIMPLEVLLT+Y R+VVKD+ VNAICYGAKLMIPGLLRF++ + VG E
Sbjct: 242 YDNYKDESYLRRVIMPLEVLLTNYPRIVVKDSAVNAICYGAKLMIPGLLRFDSKVGVGTE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+ALGIA+M+T+ MATCDHGVVA++KRVVM+RDTYPRKWGLGPRAS KK++
Sbjct: 302 VVLMTTKGEAIALGIAQMSTSDMATCDHGVVAKVKRVVMERDTYPRKWGLGPRASAKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARN 428
IA G LDKHGK NEKTPQEW RN
Sbjct: 362 IASGLLDKHGKPNEKTPQEWLRN 384
>gi|7378766|emb|CAB85492.1| putative kinetochore protein [Hordeum vulgare subsp. vulgare]
Length = 405
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/372 (82%), Positives = 342/372 (91%), Gaps = 5/372 (1%)
Query: 28 AALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPN 87
AA TT ADA+A + ++IKPQ+ PS+DTS WP+LLKNYDRLNVRTGHYTPLP+
Sbjct: 33 AADTTSLADAEAKTDG-----YMIKPQALVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPS 87
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+SPLKRPL +Y+RYG+INLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLIV
Sbjct: 88 GHSPLKRPLAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIV 147
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
C+DRATRLVKSQQGAGKEYVC+AR H VPD A+VARALE+LTGAVFQRPPLISAVKRQL
Sbjct: 148 CVDRATRLVKSQQGAGKEYVCIARFHAAVPDTARVARALESLTGAVFQRPPLISAVKRQL 207
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIYESKLLE+D +RHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGIL
Sbjct: 208 RVRTIYESKLLEHDAERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGIL 267
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
GE DNMVTMHDVMDA W DN++DE+Y+RRV+MPLEV+LTSYKRLVVKD+ VNAICYGAK
Sbjct: 268 GEQDNMVTMHDVMDAMWALDNHKDESYIRRVVMPLEVILTSYKRLVVKDSAVNAICYGAK 327
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
LMIPGLLRFENDI+VGEEVVLMTTKGEA+A+GIAEM TAVMATCDHG VA+IKRVVMDRD
Sbjct: 328 LMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMPTAVMATCDHGAVAKIKRVVMDRD 387
Query: 388 TYPRKWGLGPRA 399
TYPRKWGLGP A
Sbjct: 388 TYPRKWGLGPVA 399
>gi|218192912|gb|EEC75339.1| hypothetical protein OsI_11747 [Oryza sativa Indica Group]
Length = 563
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/474 (68%), Positives = 372/474 (78%), Gaps = 46/474 (9%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
A A ++IKPQS P +DTS WP+LLKNYDRLNVRTGHYTPLP G+SPLKRP+ +Y+RYG
Sbjct: 49 AKADGYLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYG 108
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAG
Sbjct: 109 VINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAG 168
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYV VAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D D
Sbjct: 169 KEYVSVARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDAD 228
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL ELRRVRSGILGE DNMVTMHDVMDA+
Sbjct: 229 RHLA------------------------------ELRRVRSGILGETDNMVTMHDVMDAR 258
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
W DN+ DE+YLR ++MPLEVLLTSYKRLVVKD+ VNA+CYGAKLMIPGLLRFEN+IEVG
Sbjct: 259 WAMDNFNDESYLRHIVMPLEVLLTSYKRLVVKDSAVNAVCYGAKLMIPGLLRFENEIEVG 318
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
EEVVLMTTKGEA+A+GIAEMTTAVMATCDHG VA+IKRVVMDRDTYPRKWGLGP A KK
Sbjct: 319 EEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKK 378
Query: 404 KLIAEGKLDKHGKLNEK--TPQEWARNVVLPPGGDSVVASLAAAA---------EQTVAE 452
K++AEG LDKHGK NEK TP EW RN VLP GGD+++A +AAA E +AE
Sbjct: 379 KMVAEGLLDKHGKPNEKTPTPSEWLRNAVLPAGGDAMIAGIAAAPEPEKPKVKEEADLAE 438
Query: 453 KETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVK-EDEAEEIE 505
+ KK+ D +GD NA + + +V + + +V KK+K E+EA+ +E
Sbjct: 439 ETKEKKKKKHKDEAGD----NANEGRKRKVGDDDLSASVSAKKIKVEEEADAVE 488
>gi|428176248|gb|EKX45133.1| hypothetical protein GUITHDRAFT_71484 [Guillardia theta CCMP2712]
Length = 468
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/407 (72%), Positives = 352/407 (86%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP+ TP IDTS WP+LLKNYD+LN+RTGHYTP+PNG SPLKRP+++Y+RYG+INL
Sbjct: 18 DYTIKPEDVTPKIDTSNWPLLLKNYDKLNIRTGHYTPIPNGCSPLKRPILEYVRYGVINL 77
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIVC++RATRLVKSQQGAGKEYV
Sbjct: 78 DKPANPSSHEVVAWIRRILRVDKTGHSGTLDPKVTGCLIVCVERATRLVKSQQGAGKEYV 137
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ARLH + K A+ALE L GA+FQRPPLISAVKRQLRIRTIYESK++E+D +R+L
Sbjct: 138 SIARLHGAIESENKFAKALEKLKGAIFQRPPLISAVKRQLRIRTIYESKMIEFDKERNLG 197
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFWISCEAGTYVRTMCVH+GL+LGVGGHMQELRRVRSG L E+DN++TMHDV+DAQW+YD
Sbjct: 198 VFWISCEAGTYVRTMCVHIGLLLGVGGHMQELRRVRSGALTEHDNLMTMHDVLDAQWMYD 257
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
Y+DE+YLRRVI+PLE LLT YKR+VVKD+ VNAICYGAKLMIPGLLRFE+ IE+G E+V
Sbjct: 258 TYKDESYLRRVILPLERLLTGYKRVVVKDSAVNAICYGAKLMIPGLLRFEDGIEIGTEIV 317
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ LGIA+MTTAVMATCDHGVVA+IKRV+M+RDTYPR+WGLGP+A KK++I
Sbjct: 318 MITTKGEAICLGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPQAKAKKQMII 377
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKE 454
+GKLDK+G+ N TP W G S A + + E+ A K+
Sbjct: 378 DGKLDKYGRPNANTPSNWQNLYKDLSGNQSTPAKVESQKEEEPASKK 424
>gi|296422752|ref|XP_002840923.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637149|emb|CAZ85114.1| unnamed protein product [Tuber melanosporum]
Length = 464
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/392 (75%), Positives = 343/392 (87%), Gaps = 3/392 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF IKP++ TP+ID+SQWP+LLKNY++L+VRTGHYTP+PNG +PLKR L YI G+IN
Sbjct: 10 EDFSIKPEAKTPTIDSSQWPLLLKNYEKLHVRTGHYTPIPNGCTPLKRELKSYISSGVIN 69
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 70 LDKPSNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 129
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VCV RLHDK+ A++ARALE LTGA+FQRPPLISAVKRQLRIRT++ESKLLE+D DRHL
Sbjct: 130 VCVLRLHDKIEGRAQLARALETLTGALFQRPPLISAVKRQLRIRTVHESKLLEFDNDRHL 189
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG L ENDN+VT+HDV+DAQWL
Sbjct: 190 AVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGALSENDNIVTLHDVLDAQWLA 249
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IEV EEV
Sbjct: 250 DNSRDETYLRRVIRPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRYEAGIEVNEEV 309
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKK+
Sbjct: 310 VLMTTKGEAIALGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPTAVEKKKMK 369
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV---LPPGG 435
+EGKLDK+G+ NE TP EW + P GG
Sbjct: 370 SEGKLDKYGRSNEATPGEWTKKYTDYNAPAGG 401
>gi|348669879|gb|EGZ09701.1| hypothetical protein PHYSODRAFT_258871 [Phytophthora sojae]
Length = 477
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 292/382 (76%), Positives = 343/382 (89%), Gaps = 1/382 (0%)
Query: 43 NATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRY 102
NA KD +I P+S TP++DTS+WP+LLKNY++LNVRTGHYTP+ SPLKR L DY+RY
Sbjct: 19 NAEGKD-LIAPESHTPALDTSKWPLLLKNYNQLNVRTGHYTPIACSSSPLKRNLNDYVRY 77
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+INLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVC+DRATRLVK+QQGA
Sbjct: 78 GVINLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQGA 137
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
GKEYV V RLH + AK+ARA+E LTGA+FQRPPLISAVKRQLRIRTIY SKL+EYD
Sbjct: 138 GKEYVAVVRLHSAIEGQAKLARAIETLTGALFQRPPLISAVKRQLRIRTIYSSKLIEYDE 197
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
DRHL +F +SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG+LGEND+MVTMHDV+DA
Sbjct: 198 DRHLGIFHVSCEAGTYIRTLCVHLGLVLGVGGHMQELRRVRSGVLGENDSMVTMHDVLDA 257
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
Q+ YD Y+DE+YLRR++ PLEVLLT+YKR+VVKD++VNAICYGAK MIPGLLRF +DI++
Sbjct: 258 QFQYDTYKDESYLRRIVRPLEVLLTTYKRIVVKDSSVNAICYGAKFMIPGLLRFADDIDI 317
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
GEEVVLMTTKGEA+A+ IA+MTTAVMATCDHGVVA+IKRV+M+RDTYPR+WGLGP A
Sbjct: 318 GEEVVLMTTKGEAIAVAIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQKV 377
Query: 403 KKLIAEGKLDKHGKLNEKTPQE 424
K L+ EGK+ K+GK+NE TP +
Sbjct: 378 KGLVKEGKIGKYGKVNENTPAD 399
>gi|195996317|ref|XP_002108027.1| hypothetical protein TRIADDRAFT_19124 [Trichoplax adhaerens]
gi|190588803|gb|EDV28825.1| hypothetical protein TRIADDRAFT_19124, partial [Trichoplax
adhaerens]
Length = 487
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/382 (76%), Positives = 337/382 (88%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF +KP++ ++DTS+WP+LLKNYD+LNVRTGHYTPL NG SPLKRP+ DYI+ G IN
Sbjct: 6 EDFSVKPENKIHNLDTSEWPLLLKNYDKLNVRTGHYTPLTNGMSPLKRPIRDYIKCGFIN 65
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGKEY
Sbjct: 66 LDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEY 125
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VCV RLH+ + + A +AR LE LTGA+FQRPPLISAVKRQLRIRTIYESKL+E+D DRHL
Sbjct: 126 VCVIRLHEAIENEAVLARTLETLTGALFQRPPLISAVKRQLRIRTIYESKLIEFDKDRHL 185
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVH+G ++G G HMQELRRVRSGI E D MVTMHDV+DAQW+Y
Sbjct: 186 GVFWVSCEAGTYIRTLCVHMGYLIGCGAHMQELRRVRSGIQSEQDGMVTMHDVLDAQWVY 245
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN +DE+YLRRVI PLE LLTS+KRLVVKD+ VNAICYGAKLMIPGLLR+E+ IEV EV
Sbjct: 246 DNSKDESYLRRVIKPLEALLTSHKRLVVKDSAVNAICYGAKLMIPGLLRYESGIEVNSEV 305
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V+M+TKGEAVALGIA MTTAVMATCDHG VA+IKRV+MDRDTYPRKWGLGP A KKK++
Sbjct: 306 VIMSTKGEAVALGIALMTTAVMATCDHGSVAKIKRVIMDRDTYPRKWGLGPMALKKKKMV 365
Query: 407 AEGKLDKHGKLNEKTPQEWARN 428
A G LDK+GK N+ TP +W N
Sbjct: 366 AAGLLDKYGKPNQNTPADWQEN 387
>gi|156395724|ref|XP_001637260.1| predicted protein [Nematostella vectensis]
gi|156224371|gb|EDO45197.1| predicted protein [Nematostella vectensis]
Length = 392
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/378 (76%), Positives = 336/378 (88%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF +KP +DTSQWP+LLKNYD+LN+RTGH+TPLPNG SPLKR + DYI G INL
Sbjct: 7 DFHLKPTKEAGVLDTSQWPLLLKNYDKLNIRTGHFTPLPNGCSPLKREIKDYISSGFINL 66
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCID+ATRLVKSQQGAGKEYV
Sbjct: 67 DKPANPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDKATRLVKSQQGAGKEYV 126
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLH+ + A++A+ +E LTGA+FQRPPLISAVKRQLRIRTIYESKLLEYD +RHL
Sbjct: 127 CIVRLHNAIEGQAELAKTIETLTGALFQRPPLISAVKRQLRIRTIYESKLLEYDDERHLG 186
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVH+GL++G+G HMQELRRVRSGI ENDNM TMHDV+DAQW+YD
Sbjct: 187 VFWVSCEAGTYIRTLCVHIGLLMGIGAHMQELRRVRSGIQSENDNMATMHDVLDAQWVYD 246
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE YLRR I PLE LLTS+KRLVVKD+ VNAICYGAKLMIPGLLR+E+ IE+ E++V
Sbjct: 247 NSKDETYLRRCIKPLEALLTSHKRLVVKDSAVNAICYGAKLMIPGLLRYESGIEINEQIV 306
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
+MTTKGEA+ALGIA MTTAVMA CDHG+VA+IKRV+M+RDTYPRKWGLGP+A KKKLI+
Sbjct: 307 IMTTKGEAIALGIALMTTAVMAACDHGIVAKIKRVIMERDTYPRKWGLGPKALKKKKLIS 366
Query: 408 EGKLDKHGKLNEKTPQEW 425
EGKLDK GK N+ TPQ+W
Sbjct: 367 EGKLDKFGKPNDSTPQDW 384
>gi|452822543|gb|EME29561.1| H/ACA ribonucleoprotein complex subunit 4 [Galdieria sulphuraria]
Length = 485
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/381 (77%), Positives = 337/381 (88%), Gaps = 2/381 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF IKP+ + +DT+ WP+LLKN+D+LNVRT HYTPLP G SPLKRPL +YIRYG+IN
Sbjct: 10 EDFQIKPEKRSHELDTTSWPLLLKNFDKLNVRTSHYTPLPFGNSPLKRPLKEYIRYGVIN 69
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP NPSSHEVVAW+KRIL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEY
Sbjct: 70 LDKPGNPSSHEVVAWVKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEY 129
Query: 167 VCVARLHDKVPDV--AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
V V RLHD + + AK+ARA++ LTGAVFQRPPLISAVKRQLRIRTIYESKLLE+D R
Sbjct: 130 VTVLRLHDSLGEGGEAKLARAVDRLTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDDSR 189
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
HL VFWI CEAGTYVRT+CVHLGL+LGVG HMQELRRVRSG +GEN +VTMHDV+DAQW
Sbjct: 190 HLAVFWIRCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGAMGENSGLVTMHDVLDAQW 249
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
LY+ DE+YLRRVIMPLE LL YKR+VVKD+ VNAICYGAK+MIPGLLRFE+ IEVGE
Sbjct: 250 LYETCGDESYLRRVIMPLEALLVGYKRVVVKDSAVNAICYGAKVMIPGLLRFESGIEVGE 309
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
E+V+MTTKGEA+ALGIAEMT+AVMAT DHGV+ARIKRV+M+RDTYPR+WGLGP AS KK+
Sbjct: 310 EIVIMTTKGEAIALGIAEMTSAVMATVDHGVIARIKRVIMERDTYPRRWGLGPVASKKKQ 369
Query: 405 LIAEGKLDKHGKLNEKTPQEW 425
LIA G+LDKHGK NE TP+ W
Sbjct: 370 LIAAGQLDKHGKPNENTPKNW 390
>gi|301113300|ref|XP_002998420.1| H/ACA ribonucleoprotein complex subunit 4 [Phytophthora infestans
T30-4]
gi|262111721|gb|EEY69773.1| H/ACA ribonucleoprotein complex subunit 4 [Phytophthora infestans
T30-4]
Length = 480
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 287/375 (76%), Positives = 337/375 (89%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+I P+S TP++DTS+WP+LLKNY +LNVRTGHYTP+ SPLKR L DY+RYG+INLDK
Sbjct: 25 LIAPESHTPALDTSKWPLLLKNYHQLNVRTGHYTPIACSSSPLKRNLHDYVRYGVINLDK 84
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
PANPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIVC+DRATRLVK+QQGAGKEYV V
Sbjct: 85 PANPSSHEVVAWIRRILRVDKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKEYVAV 144
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLH + K+ARA+E LTGA+FQRPPLISAVKRQLRIRTIYESKL+EYD DRHL +F
Sbjct: 145 VRLHSAIESQVKLARAIETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDEDRHLGIF 204
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG++GEND MVTMHDV+DAQ+ YD Y
Sbjct: 205 HVSCEAGTYIRTLCVHLGLVLGVGGHMQELRRVRSGVMGENDAMVTMHDVLDAQFQYDTY 264
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+DE+YLRR++ PLEVLLT+YKR+VVKD++VNAICYGAK MIPGLLRF +DI+VGEEVVLM
Sbjct: 265 KDESYLRRIVRPLEVLLTTYKRIVVKDSSVNAICYGAKFMIPGLLRFADDIDVGEEVVLM 324
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+ IA+MTTAVMATCDHGVVA+IKRV+M+RDTYPR+WGLGP A K L+ EG
Sbjct: 325 TTKGEAIAVAIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQKVKGLVKEG 384
Query: 410 KLDKHGKLNEKTPQE 424
K+ K+GK+NE TP +
Sbjct: 385 KIGKYGKVNENTPAD 399
>gi|321257598|ref|XP_003193645.1| centromere/microtubule binding protein cbf5 [Cryptococcus gattii
WM276]
gi|317460115|gb|ADV21858.1| Centromere/microtubule binding protein cbf5, putative [Cryptococcus
gattii WM276]
Length = 503
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 294/395 (74%), Positives = 346/395 (87%), Gaps = 1/395 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F IK +S TP +DTSQWP+LLKNYD+L VR+ H+TP+P G SPLKR L Y++ G+INL
Sbjct: 22 EFTIKSESVTPKLDTSQWPLLLKNYDKLLVRSSHFTPIPTGISPLKRDLQTYVKSGVINL 81
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 82 DKPSNPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 141
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV R HDK+ D +ARALE LTGA+FQRPPLISAVKRQLR+RTIYESKL+EYD +R+L
Sbjct: 142 CVVRFHDKLKDEKALARALETLTGALFQRPPLISAVKRQLRVRTIYESKLIEYDNERNLG 201
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSGI GEND++V+MHDV+DAQWLYD
Sbjct: 202 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGITGENDDIVSMHDVLDAQWLYD 261
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LLT+YKR+VVKD+ VNAICYGAKLMIPGLLR+E DIEV EEVV
Sbjct: 262 NTRDESYLRRVIRPLESLLTNYKRIVVKDSAVNAICYGAKLMIPGLLRYEADIEVNEEVV 321
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+GIA+M+T +A+CDHGVVA++KR +M+RD YPRKWGLGP+A KKK+I
Sbjct: 322 LMTTKGEAIAIGIAQMSTVDLASCDHGVVAKVKRCIMNRDLYPRKWGLGPKAQEKKKMIK 381
Query: 408 EGKLDKHGKLNEK-TPQEWARNVVLPPGGDSVVAS 441
+G+LDK+GK E TPQ+W++ V D+V AS
Sbjct: 382 KGELDKYGKPIEGVTPQQWSKGYVDYNDPDAVPAS 416
>gi|212536058|ref|XP_002148185.1| pseudouridylate synthase family protein [Talaromyces marneffei ATCC
18224]
gi|210070584|gb|EEA24674.1| pseudouridylate synthase family protein [Talaromyces marneffei ATCC
18224]
Length = 481
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/475 (65%), Positives = 371/475 (78%), Gaps = 37/475 (7%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP+S TP+I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 10 DFSIKPESVTPNIPTSEWPLLLKNYDQLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINL 69
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 70 DKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 129
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 130 CVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 189
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQWL
Sbjct: 190 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEEDGMVTLHDVLDAQWLM 249
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEVGEEV
Sbjct: 250 DNQRDESYLRRVIRPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVGEEV 309
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 310 VLMTTKGEAIALGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 369
Query: 407 AEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDAS 466
++GKLDK+G+ NE TP +W + A L A T A+K
Sbjct: 370 SDGKLDKYGRPNEATPAKWQSSY------KDYNAPLGEQAATTPAQKPE----------- 412
Query: 467 GDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
D+PA ++ +K++ ++ED+AEE + ++KKK+K D E
Sbjct: 413 -DAPAPSSPSSKMD---------------IEEDKAEE---KPDDEKKKRKHDGET 448
>gi|303281684|ref|XP_003060134.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458789|gb|EEH56086.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 496
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 312/395 (78%), Positives = 354/395 (89%), Gaps = 3/395 (0%)
Query: 45 TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
T +DF I+P+ TP++D S+WP+LLK+YD+L VRTGHYTP+P G+SPLKRPL +YIRYG+
Sbjct: 49 TTEDFAIQPEKVTPTLDASKWPLLLKDYDKLMVRTGHYTPIPCGHSPLKRPLQEYIRYGV 108
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKPANPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVK+QQGAGK
Sbjct: 109 INLDKPANPSSHEVVAWLKRMLRVEKTGHSGTLDPKVTGGLIVCIDRATRLVKAQQGAGK 168
Query: 165 EYVCVARLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
EYVCVARLH K P+ K V RA+E LTGA+FQRPPLISAVKRQLRIRTIYESK+ EYD
Sbjct: 169 EYVCVARLHSK-PEGGKQAVLRAIETLTGALFQRPPLISAVKRQLRIRTIYESKMCEYDE 227
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
+R+LVVFWISCEAGTYVRTMCVHLGL+LGVGGHMQELRRVRSGILGENDN+ TMHDVMDA
Sbjct: 228 ERNLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGILGENDNLCTMHDVMDA 287
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
W+ DN + E YLRRVIMPLEVLLT+YKR+VVKD+ VNAICYGAKLMIPGLLR+ + IEV
Sbjct: 288 MWVNDNLKQEDYLRRVIMPLEVLLTNYKRVVVKDSAVNAICYGAKLMIPGLLRYASGIEV 347
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
GEEVVLMTTKGEA+A+G+A+M TAVMATCDHG VA+IKRVVM+RDTYPR+WGLGP A+ K
Sbjct: 348 GEEVVLMTTKGEAIAVGVAQMNTAVMATCDHGCVAKIKRVVMERDTYPRRWGLGPTATAK 407
Query: 403 KKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDS 437
KKLIAEGKLDK GK NEKTP E+ R+V GG +
Sbjct: 408 KKLIAEGKLDKFGKPNEKTPSEYLRSVPDAAGGST 442
>gi|260825213|ref|XP_002607561.1| hypothetical protein BRAFLDRAFT_71433 [Branchiostoma floridae]
gi|229292909|gb|EEN63571.1| hypothetical protein BRAFLDRAFT_71433 [Branchiostoma floridae]
Length = 470
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 294/420 (70%), Positives = 350/420 (83%), Gaps = 3/420 (0%)
Query: 45 TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
T DF+IKP S ++T+ WP+LLKNYD+LNVRTGHYTP+P+G SPLKRP+ DY+R G
Sbjct: 31 TTDDFVIKPDSKPTKLNTADWPLLLKNYDKLNVRTGHYTPIPSGCSPLKRPIEDYVRSGF 90
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVC++RATRLVKSQQGAGK
Sbjct: 91 INLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQGAGK 150
Query: 165 EYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
EYVCV RLH + ++AR +E LTGA+FQRPPLISAVKRQLRIRTIYESKL++YD +
Sbjct: 151 EYVCVVRLHSAIDGQEELARTIEHLTGALFQRPPLISAVKRQLRIRTIYESKLIQYDPES 210
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
L VFW+SCEAGTY+RT+CVH+GL+LGVGG MQELRRVRSGI+ E + MVTMHDV+DAQW
Sbjct: 211 RLGVFWVSCEAGTYIRTLCVHVGLLLGVGGQMQELRRVRSGIMSEKEGMVTMHDVLDAQW 270
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
++DN +DE+YLRRVI PLE LLTS+KR+V+KD+ VNA+CYGAK+M+PG+LRFE+ IE E
Sbjct: 271 MHDNQKDESYLRRVIRPLEALLTSHKRIVLKDSAVNAVCYGAKIMLPGVLRFEDGIEQNE 330
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
E+V+MTTKGEAV LGIA MTTA MATCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS+KKK
Sbjct: 331 EIVVMTTKGEAVCLGIALMTTATMATCDHGIVAKIKRVIMERDTYPRKWGLGPKASLKKK 390
Query: 405 LIAEGKLDKHGKLNEKTPQEWARNVV---LPPGGDSVVASLAAAAEQTVAEKETAGVKKR 461
LI EG LDK+GK NEKTPQ+W + V + G + A E + AG K R
Sbjct: 391 LIKEGLLDKYGKANEKTPQDWKSSYVDYNVAKGNNGAAVPPAQVTPGKSPEADGAGAKVR 450
>gi|325182641|emb|CCA17096.1| H/ACA ribonucleoprotein complex subunit 4 putative [Albugo
laibachii Nc14]
Length = 467
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 301/424 (70%), Positives = 354/424 (83%), Gaps = 23/424 (5%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSI 60
MT EL KKK +K+S + K D TD +I P+S+TP++
Sbjct: 1 MTSSEL--KMKKKKRKQSMELERKPD-----TD----------------LIAPESYTPTL 37
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTS+WP+LLKNY+ LN+RTGHYTP+P SPLKR + DY+RYGIINLDKPANPSSHEVVA
Sbjct: 38 DTSKWPLLLKNYNTLNIRTGHYTPIPCSSSPLKRNIQDYVRYGIINLDKPANPSSHEVVA 97
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WI+RILRV+KTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV V RLH+ +
Sbjct: 98 WIRRILRVDKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVAVVRLHNAIESQV 157
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
K+A A+E LTGA+FQRPPLISAVKRQLRIRTIY+SKL+EYD R+L VFW+SCEAGTY+R
Sbjct: 158 KLANAIETLTGALFQRPPLISAVKRQLRIRTIYQSKLIEYDEKRNLGVFWVSCEAGTYIR 217
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
T+CVHLGL+LGVGGHMQELRRVRSG + E D MVTMHDVMDAQ+ YDNY+DE+YLRRV+
Sbjct: 218 TLCVHLGLVLGVGGHMQELRRVRSGAMSEQDGMVTMHDVMDAQYQYDNYKDESYLRRVVR 277
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLEVLLTSYKR+VVKD++VNAICYGAK M+PGLLRF +DI++GEEVVLMTTKGEA+A+GI
Sbjct: 278 PLEVLLTSYKRIVVKDSSVNAICYGAKFMVPGLLRFADDIDIGEEVVLMTTKGEAIAIGI 337
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
A+MTTAVMATCDHGVVA+IKRV+M+RDTYPR+WGLGP A K L+ EGK+ K+GK+NE
Sbjct: 338 AQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQRVKNLVKEGKIGKYGKVNES 397
Query: 421 TPQE 424
TP E
Sbjct: 398 TPVE 401
>gi|405120206|gb|AFR94977.1| centromere/microtubule binding protein cbf5 [Cryptococcus
neoformans var. grubii H99]
Length = 503
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 288/384 (75%), Positives = 341/384 (88%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IK ++ TP +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR L Y++ G+INL
Sbjct: 22 DFSIKSEAVTPKLDTSQWPLLLKNYDKLLVRSSHFTPIPSGISPLKRDLQTYVKSGVINL 81
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 82 DKPSNPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 141
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV R HDK+ D + RALE LTGA+FQRPPLISAVKRQLR+RTIYESKL+EYD +R+L
Sbjct: 142 CVVRFHDKLQDEKALPRALETLTGALFQRPPLISAVKRQLRVRTIYESKLIEYDNERNLG 201
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSGI GEND++V+MHDV+DAQWLYD
Sbjct: 202 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGITGENDDIVSMHDVLDAQWLYD 261
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LLT+YKR+VVKD+ VNAICYGAKLMIPGLLR+E DIEV EEVV
Sbjct: 262 NTRDESYLRRVIRPLESLLTNYKRIVVKDSAVNAICYGAKLMIPGLLRYEADIEVNEEVV 321
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+GIA+M+T +A+CDHGVVA++KR +M+RD YPRKWGLGP+A KKK+I
Sbjct: 322 LMTTKGEAIAIGIAQMSTVDLASCDHGVVAKVKRCIMNRDLYPRKWGLGPKAQEKKKMIK 381
Query: 408 EGKLDKHGKLNEK-TPQEWARNVV 430
+G+LDK+GK E TPQ+W++ +
Sbjct: 382 KGELDKYGKPIEGVTPQQWSKGYI 405
>gi|225685065|gb|EEH23349.1| centromere/microtubule-binding protein cbf5 [Paracoccidioides
brasiliensis Pb03]
Length = 491
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 303/424 (71%), Positives = 349/424 (82%), Gaps = 2/424 (0%)
Query: 39 ADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVD 98
A D DF IKPQ+ TP+I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L
Sbjct: 2 AADTGRMDVDFSIKPQAVTPAIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKS 61
Query: 99 YIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 158
YI G+INLDKPANPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKS
Sbjct: 62 YISSGVINLDKPANPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKS 121
Query: 159 QQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKL 217
QQGAGKEYVCV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL
Sbjct: 122 QQGAGKEYVCVIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKL 181
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMH 277
E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+H
Sbjct: 182 FEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEMDGMVTLH 241
Query: 278 DVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
DV+DAQW+ DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE
Sbjct: 242 DVLDAQWMMDNNRDESYLRRVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFE 301
Query: 338 NDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGP 397
IE+ EEVVLMTTKGEA+A+ IA+M+T ++TCDHGVVA++KR +M+RD YPRKWGLGP
Sbjct: 302 AGIEIHEEVVLMTTKGEAIAIAIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRKWGLGP 361
Query: 398 RASMKKKLIAEGKLDKHGKLNEKTPQEW-ARNVVLPPGGDSVVASLAAAAEQTVAEKETA 456
A KKKL ++GKLDK+G+ NEKTP +W A DS +A+ A A KE+A
Sbjct: 362 VALEKKKLKSDGKLDKYGRPNEKTPAKWNAEYKDFNAPLDSDIAATGATPATPSASKESA 421
Query: 457 GVKK 460
K
Sbjct: 422 PAAK 425
>gi|58266086|ref|XP_570199.1| centromere/microtubule binding protein cbf5 [Cryptococcus
neoformans var. neoformans JEC21]
gi|134110942|ref|XP_775935.1| hypothetical protein CNBD3420 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258601|gb|EAL21288.1| hypothetical protein CNBD3420 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226432|gb|AAW42892.1| centromere/microtubule binding protein cbf5, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 503
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 292/395 (73%), Positives = 344/395 (87%), Gaps = 1/395 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IK +S TP +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR L Y++ G+INL
Sbjct: 22 DFSIKSESVTPKLDTSQWPLLLKNYDKLLVRSSHFTPIPSGISPLKRDLQTYVKSGVINL 81
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 82 DKPSNPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 141
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV R HDK+ D + RALE LTGA+FQRPPLISAVKRQLR+RTIYESKL+EYD +R+L
Sbjct: 142 CVVRFHDKLQDEKALPRALETLTGALFQRPPLISAVKRQLRVRTIYESKLIEYDNERNLG 201
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSGI GEND++V+MHDV+DAQWLYD
Sbjct: 202 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGITGENDDIVSMHDVLDAQWLYD 261
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL +YKR+VVKD+ VNAICYGAKLMIPGLLR+E DIEV EEVV
Sbjct: 262 NTRDESYLRRVIRPLESLLVNYKRIVVKDSAVNAICYGAKLMIPGLLRYEADIEVNEEVV 321
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+GIA+M+T +A+CDHGVVA++KR +M+RD YPRKWGLGP+A KKK+I
Sbjct: 322 LMTTKGEAIAIGIAQMSTVDLASCDHGVVAKVKRCIMNRDLYPRKWGLGPKAQEKKKMIK 381
Query: 408 EGKLDKHGKLNEK-TPQEWARNVVLPPGGDSVVAS 441
+G+LDK+GK E TPQ+W+ + D+V AS
Sbjct: 382 KGELDKYGKPIEGVTPQQWSSGYIDYNDPDAVPAS 416
>gi|242794744|ref|XP_002482438.1| pseudouridylate synthase family protein [Talaromyces stipitatus
ATCC 10500]
gi|218719026|gb|EED18446.1| pseudouridylate synthase family protein [Talaromyces stipitatus
ATCC 10500]
Length = 483
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 291/379 (76%), Positives = 334/379 (88%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP+S TPSI TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 11 DFSIKPESVTPSIPTSEWPLLLKNYDQLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQWL
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEQDGMVTLHDVLDAQWLM 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEV EEV
Sbjct: 251 DNQRDESYLRKVIRPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 311 VLMTTKGEAIALGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
++GKLDK+G+ NE TP +W
Sbjct: 371 SDGKLDKYGRPNEATPAKW 389
>gi|389751571|gb|EIM92644.1| putative rRNA pseudouridine synthase [Stereum hirsutum FP-91666
SS1]
Length = 523
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 294/405 (72%), Positives = 342/405 (84%), Gaps = 6/405 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IK +S P +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR L YI+ G+INL
Sbjct: 18 DYSIKSESTQPKLDTSQWPLLLKNYDKLLVRSSHFTPIPSGNSPLKRDLASYIKSGVINL 77
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 78 DKPSNPSSHEVVAWLRRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 137
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH +P+ + RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKLLE D R+L
Sbjct: 138 CVLRLHSALPNPTALPRALETLTGALFQRPPLISAVKRQLRIRTIHESKLLEVDEKRNLS 197
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGLILGVGGHMQELRRVRSG L END+MVTMHDV+DAQW+YD
Sbjct: 198 VFWVSCEAGTYIRTLCVHLGLILGVGGHMQELRRVRSGALSENDDMVTMHDVLDAQWMYD 257
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI V EEVV
Sbjct: 258 NTRDESYLRRVIRPLECLLIGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADISVHEEVV 317
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+M+T +ATCDHGVVA+IKRV+M+RDTYPR+WGLGP+A KKK++
Sbjct: 318 LMTTKGEAIALAIAQMSTVDLATCDHGVVAKIKRVIMERDTYPRRWGLGPKAMEKKKMVK 377
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV-----LPPGGDSVVASLAAAA 446
+GKL KHG K+ TP EW+++ V P G S VA+ AA
Sbjct: 378 DGKLGKHGEKIEGVTPAEWSKDYVDYTRDQPTAGPSTVATSVPAA 422
>gi|422294938|gb|EKU22238.1| H/ACA ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana
CCMP526]
Length = 498
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 283/380 (74%), Positives = 340/380 (89%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ +F+IKP++ TP +DTS WP+LLKNYD+L+VRT YTP+P G SPLKRPL +Y+RYG+I
Sbjct: 24 STEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVI 83
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVK+QQGAGKE
Sbjct: 84 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKE 143
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV V RLH + +K+ RA+E LTGA+FQRPPLI+AVKRQLRIRTIYESKLLEYD RH
Sbjct: 144 YVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRH 203
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL++G GGHMQELRRVRSG+L END+++TMHDV+DAQ+
Sbjct: 204 LGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYA 263
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD Y+DE+YLRR ++PLE+L + KR+VVKD+ VNAICYGA+LMIPGLLRF + IEV +E
Sbjct: 264 YDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDE 323
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VV++TTKGEA+A+GIA+MTTAVMATCDHG+VA+IKRVVM+RDTYPR+WGLGP A+ KK L
Sbjct: 324 VVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGL 383
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
+ EGKLDKHG+ N +TPQ++
Sbjct: 384 MKEGKLDKHGRPNAETPQDY 403
>gi|307103593|gb|EFN51852.1| hypothetical protein CHLNCDRAFT_37236 [Chlorella variabilis]
Length = 444
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 298/386 (77%), Positives = 352/386 (91%), Gaps = 1/386 (0%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKPQS TP +DTS WP+LLKNY +LNVR+GHYTP+P+G++PL+RPL +Y+RYG+INLDK
Sbjct: 6 VIKPQSATPPLDTSSWPLLLKNYSQLNVRSGHYTPIPSGHTPLRRPLQEYVRYGVINLDK 65
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAGKEYV V
Sbjct: 66 PSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVAV 125
Query: 170 ARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
ARLH KV AKVARA+E LTGA+FQRPPLISAVKRQLRIRTIY+SKL+EYD +R+LVV
Sbjct: 126 ARLHSKVEGGAAKVARAIETLTGALFQRPPLISAVKRQLRIRTIYQSKLIEYDDERNLVV 185
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTYVRT+CVHLGL+LGVGGHMQELRRVRSGI+GE DNM+TMHDV+DAQW +DN
Sbjct: 186 FWVSCEAGTYVRTLCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMITMHDVLDAQWTFDN 245
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
DEAYLRRV+MPLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ IEV EEVVL
Sbjct: 246 LNDEAYLRRVVMPLETLLTNYKRIVVKDSAVNALCYGAKLMIPGLLRYESGIEVDEEVVL 305
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+ +A+MTT++MATCDHG VA++KRV+M+RDTYPR+WGLGP A KK+L+A
Sbjct: 306 MTTKGEAIAVAVAQMTTSIMATCDHGCVAKVKRVIMERDTYPRRWGLGPMAQKKKQLVAA 365
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPG 434
G+LDK+G+ NE TP+E+ R + P G
Sbjct: 366 GQLDKYGRPNEVTPKEYLRALGEPDG 391
>gi|239613209|gb|EEQ90196.1| centromere/microtubule binding protein CBF5 [Ajellomyces
dermatitidis ER-3]
gi|327354718|gb|EGE83575.1| centromere/microtubule-binding protein cbf5 [Ajellomyces
dermatitidis ATCC 18188]
Length = 489
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 293/397 (73%), Positives = 339/397 (85%), Gaps = 9/397 (2%)
Query: 30 LTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGY 89
+TTD D D F IKP++ TP+I TS+WP+LLKNYD+L VRTGH+TP+P G
Sbjct: 1 MTTDAGKMDVD--------FAIKPEAVTPAIPTSEWPLLLKNYDKLLVRTGHFTPIPAGC 52
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCI 149
+PLKR L YI G+INLDKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCI
Sbjct: 53 TPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCI 112
Query: 150 DRATRLVKSQQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLR 208
DRATRLVKSQQGAGKEYVCV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLR
Sbjct: 113 DRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLR 172
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
IRTI+ESKL E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG +
Sbjct: 173 IRTIHESKLYEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMD 232
Query: 269 ENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
E D MVT+HDV+DAQW+ DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKL
Sbjct: 233 EKDGMVTLHDVLDAQWMMDNNRDESYLRRVIRPLESLLTSYKRIVVKDSAVNAVCYGAKL 292
Query: 329 MIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388
MIPGLLRFE IE+ EEVVLMTTKGEA+A+ IA+M+T ++TCDHGVVA++KR +M+RD
Sbjct: 293 MIPGLLRFEAGIEIHEEVVLMTTKGEAIAIAIAQMSTVELSTCDHGVVAKVKRCIMERDL 352
Query: 389 YPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEW 425
YPRKWGLGP A KKKL ++GKLDK+G+ NEKTP +W
Sbjct: 353 YPRKWGLGPVALEKKKLKSDGKLDKYGRPNEKTPAKW 389
>gi|261190865|ref|XP_002621841.1| centromere/microtubule binding protein CBF5 [Ajellomyces
dermatitidis SLH14081]
gi|239590885|gb|EEQ73466.1| centromere/microtubule binding protein CBF5 [Ajellomyces
dermatitidis SLH14081]
Length = 482
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 293/397 (73%), Positives = 339/397 (85%), Gaps = 9/397 (2%)
Query: 30 LTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGY 89
+TTD D D F IKP++ TP+I TS+WP+LLKNYD+L VRTGH+TP+P G
Sbjct: 1 MTTDAGKMDVD--------FAIKPEAVTPAIPTSEWPLLLKNYDKLLVRTGHFTPIPAGC 52
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCI 149
+PLKR L YI G+INLDKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCI
Sbjct: 53 TPLKRDLKSYISSGVINLDKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCI 112
Query: 150 DRATRLVKSQQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLR 208
DRATRLVKSQQGAGKEYVCV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLR
Sbjct: 113 DRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLR 172
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
IRTI+ESKL E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG +
Sbjct: 173 IRTIHESKLYEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMD 232
Query: 269 ENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
E D MVT+HDV+DAQW+ DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKL
Sbjct: 233 EKDGMVTLHDVLDAQWMMDNNRDESYLRRVIRPLESLLTSYKRIVVKDSAVNAVCYGAKL 292
Query: 329 MIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388
MIPGLLRFE IE+ EEVVLMTTKGEA+A+ IA+M+T ++TCDHGVVA++KR +M+RD
Sbjct: 293 MIPGLLRFEAGIEIHEEVVLMTTKGEAIAIAIAQMSTVELSTCDHGVVAKVKRCIMERDL 352
Query: 389 YPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEW 425
YPRKWGLGP A KKKL ++GKLDK+G+ NEKTP +W
Sbjct: 353 YPRKWGLGPVALEKKKLKSDGKLDKYGRPNEKTPAKW 389
>gi|226294376|gb|EEH49796.1| centromere/microtubule-binding protein CBF5 [Paracoccidioides
brasiliensis Pb18]
Length = 491
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 292/388 (75%), Positives = 336/388 (86%), Gaps = 1/388 (0%)
Query: 39 ADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVD 98
A D DF IKPQ+ TP+I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L
Sbjct: 2 AADTGRMDVDFSIKPQAVTPAIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKS 61
Query: 99 YIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 158
YI G+INLDKPANPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKS
Sbjct: 62 YISSGVINLDKPANPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKS 121
Query: 159 QQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKL 217
QQGAGKEYVCV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL
Sbjct: 122 QQGAGKEYVCVIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKL 181
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMH 277
E+D DRH+ VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+H
Sbjct: 182 FEFDNDRHIGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEMDGMVTLH 241
Query: 278 DVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
DV+DAQW+ DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE
Sbjct: 242 DVLDAQWMMDNNRDESYLRRVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFE 301
Query: 338 NDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGP 397
IE+ EEVVLMTTKGEA+A+ IA+M+T ++TCDHGVVA++KR +M+RD YPRKWGLGP
Sbjct: 302 AGIEIHEEVVLMTTKGEAIAIAIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRKWGLGP 361
Query: 398 RASMKKKLIAEGKLDKHGKLNEKTPQEW 425
A KKKL ++GKLDK+G+ NEKTP +W
Sbjct: 362 VALEKKKLKSDGKLDKYGRPNEKTPAKW 389
>gi|225562235|gb|EEH10515.1| centromere/microtubule binding protein CBF5 [Ajellomyces capsulatus
G186AR]
Length = 486
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 288/379 (75%), Positives = 335/379 (88%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ TP+I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 11 DYAIKPEAVTPAIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE+ IE+ EEV
Sbjct: 251 DNNRDESYLRRVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFESGIEIHEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+ IA+M+T ++TCDHGVVA++KR +M+RD YPRKWGLGP A KKKL
Sbjct: 311 VLMTTKGEAIAIAIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRKWGLGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
++GKLDK+G+ NEKTP +W
Sbjct: 371 SDGKLDKYGRPNEKTPAKW 389
>gi|390604771|gb|EIN14162.1| putative rRNA pseudouridine synthase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 534
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/406 (71%), Positives = 339/406 (83%), Gaps = 6/406 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF +KP+ P +DTSQWP+LLKNYD+L VR+ H+TP+P+G PLKR + YI+ G+INL
Sbjct: 20 DFALKPEKSEPKLDTSQWPLLLKNYDKLLVRSAHFTPIPSGCPPLKRDITSYIKSGVINL 79
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 80 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 139
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHD + D A + RAL+ LTGA+FQRPPLISAVKRQLRIRTIYESKLLE+D R+L
Sbjct: 140 AVLRLHDGLSDPATLPRALQTLTGALFQRPPLISAVKRQLRIRTIYESKLLEFDEQRNLA 199
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGLILGVGGHMQELRRVRSG L END++VTMHDVMDAQW+YD
Sbjct: 200 VFWVSCEAGTYIRTLCVHLGLILGVGGHMQELRRVRSGALSENDDIVTMHDVMDAQWMYD 259
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI V EEVV
Sbjct: 260 NTRDESYLRRVIRPLECLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADISVHEEVV 319
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP A+ KKK++
Sbjct: 320 LMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPVAAQKKKMVK 379
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV-----LPPGGDSVVASLAAAAE 447
+GKL K G K+ TP EW+++ V P G S AA E
Sbjct: 380 DGKLSKFGEKIEGVTPAEWSKDYVDYNREQPAAGPSTTVPTGAAIE 425
>gi|50552986|ref|XP_503903.1| YALI0E13486p [Yarrowia lipolytica]
gi|49649772|emb|CAG79496.1| YALI0E13486p [Yarrowia lipolytica CLIB122]
Length = 485
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 286/404 (70%), Positives = 345/404 (85%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D++IKP++ PS DTS+WP+LLKNYD+L VR+GHYTP+P G SPLKR L YI G+INL
Sbjct: 10 DYLIKPENVGPSADTSEWPLLLKNYDKLLVRSGHYTPIPTGCSPLKRDLKSYIASGVINL 69
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 70 DKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 129
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD + D ++AR LE LTGA+FQRPPLISAVKRQLR+RTIY+SKLLE+D DRHL
Sbjct: 130 CIVRLHDALEDEKEMARGLENLTGALFQRPPLISAVKRQLRVRTIYDSKLLEFDNDRHLG 189
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L E+D MVT+HD++DAQWLYD
Sbjct: 190 VFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALDESDGMVTLHDILDAQWLYD 249
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE+YLRR I PLE LL YKR+VVKD+ VN+ICYGAKLM+PG+LR+E IE+ +E+V
Sbjct: 250 NTKDESYLRRCIRPLESLLLGYKRIVVKDSAVNSICYGAKLMLPGVLRYEEGIELEDEIV 309
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+ALGIA+MTT +A+CDHGVV+RIKR +M+RDTYPR+WGLGP A+ KKKL A
Sbjct: 310 LITTKGEAIALGIAQMTTVDLASCDHGVVSRIKRCIMERDTYPRRWGLGPVATEKKKLKA 369
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVA 451
+GKLDK+G+ NE TP +W ++ V + V + A+ +T+A
Sbjct: 370 DGKLDKYGRPNESTPADWKKSYVDHTEDEPVTKPVVASVTETIA 413
>gi|326437286|gb|EGD82856.1| centromere/microtubule-binding protein cbf5 [Salpingoeca sp. ATCC
50818]
Length = 495
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 298/431 (69%), Positives = 353/431 (81%), Gaps = 5/431 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF I+P P+ID S WP+LLK++D+LN+R+ HYTPLPNG SPLKR + DY+R G+INL
Sbjct: 12 DFQIEPSKVKPTIDASDWPLLLKDFDKLNIRSNHYTPLPNGCSPLKRKIHDYVRSGVINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWI+RIL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 72 DKPANPSSHEVVAWIRRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 131
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH + +A+ALE LTGA+FQRPPLISAVKRQLR+RTIYESKLLEYD DRHL
Sbjct: 132 GLVRLHSAIDGEVALAQALEKLTGALFQRPPLISAVKRQLRVRTIYESKLLEYDNDRHLG 191
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+ CEAGTY+RT+CVHLG +LGVGGHMQELRRVRSGI E DN+VTMHDV+DAQW Y+
Sbjct: 192 IFWVKCEAGTYIRTLCVHLGFLLGVGGHMQELRRVRSGIQSEADNLVTMHDVLDAQWHYE 251
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RD+ YLRRVI PLE+LLT +KR+VVKD+ VNAICYGAKLMIPGLLR+ + IE+ EE V
Sbjct: 252 NTRDQTYLRRVIQPLEILLTGHKRVVVKDSAVNAICYGAKLMIPGLLRYADGIEIDEECV 311
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEAVA+GIA MTTAVMATCDHGVVA+IKRV+M+RDTYPR+WGLGPRA+ KKKLI
Sbjct: 312 ILTTKGEAVAVGIACMTTAVMATCDHGVVAKIKRVIMERDTYPRQWGLGPRAAAKKKLIQ 371
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
GKLDK+G+ N+KTP++W V D A+ A AA +T ++ KKRK
Sbjct: 372 AGKLDKYGRPNDKTPKDWLNGYV-----DYAAAAAAVAATETQDADDSNPAKKRKQSEDV 426
Query: 468 DSPALNAKKAK 478
P+ K++K
Sbjct: 427 SEPSTPVKESK 437
>gi|449677683|ref|XP_002154610.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Hydra
magnipapillata]
Length = 492
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 281/378 (74%), Positives = 338/378 (89%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+IIKP S P +DTS+WP+LLKNYDRLNVRTGHYTP+P+G +PLKR L DY+ G INL
Sbjct: 23 DYIIKPTSVIPKLDTSKWPLLLKNYDRLNVRTGHYTPIPSGSAPLKRSLKDYLAAGYINL 82
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KRILRV+KTGHSGTLDPKVTG LIVCIDR TRLVKSQQGAGKEYV
Sbjct: 83 DKPANPSSHEVVAWVKRILRVQKTGHSGTLDPKVTGCLIVCIDRTTRLVKSQQGAGKEYV 142
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + K+A+A+E LTGA+FQRPPLISAVKRQLR+RTIYESKLLE+D +++L
Sbjct: 143 GILRLHNAIESKDKLAQAIEMLTGALFQRPPLISAVKRQLRVRTIYESKLLEFDQEKNLA 202
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFWISCEAGTYVRT+CVHLGLILGVGGHMQELRRVRSGI EN+++VTMHDV+DAQW++D
Sbjct: 203 VFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIQSENEDLVTMHDVLDAQWVFD 262
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE+YLR+V+ PLE LLT +KRLV+KD+ VNAICYGAKLM+PG+LR+E+ I++ +++V
Sbjct: 263 NTKDESYLRKVVKPLEKLLTGHKRLVIKDSAVNAICYGAKLMLPGILRYESGIDMNDDIV 322
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
+MTTKGEA+A+GIA M+TA +ATCDHGVVA+IKRV+MDRDTYPRKWGLGP+A KKK+IA
Sbjct: 323 MMTTKGEAIAVGIALMSTATIATCDHGVVAKIKRVIMDRDTYPRKWGLGPKALEKKKMIA 382
Query: 408 EGKLDKHGKLNEKTPQEW 425
G LDK+GK E TP++W
Sbjct: 383 SGLLDKYGKPTENTPKDW 400
>gi|320040868|gb|EFW22801.1| centromere/microtubule binding protein CBF5 [Coccidioides posadasii
str. Silveira]
Length = 490
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 294/406 (72%), Positives = 338/406 (83%), Gaps = 7/406 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP++ TP I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 9 DFSIKPEAATPPIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINL 68
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 69 DKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 128
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 129 CVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 188
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 189 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEQDGMVTLHDVLDAQWMM 248
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRV+ PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEV EEV
Sbjct: 249 DNNRDESYLRRVVRPLETLLTTYKRVVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVHEEV 308
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WG+GP A KKK+
Sbjct: 309 VLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKMK 368
Query: 407 AEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAE 452
A+GKLDK G+ N TP +W AS AAA Q E
Sbjct: 369 ADGKLDKFGRPNASTPAKWQAEY------KDYSASAGAAAPQPATE 408
>gi|295660569|ref|XP_002790841.1| centromere/microtubule-binding protein cbf5 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226281394|gb|EEH36960.1| centromere/microtubule-binding protein cbf5 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 796
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/388 (75%), Positives = 336/388 (86%), Gaps = 1/388 (0%)
Query: 39 ADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVD 98
A D DF IKPQ+ TP+I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L
Sbjct: 310 AADTGRMDVDFSIKPQAVTPAIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKS 369
Query: 99 YIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 158
YI G+INLDKPANPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKS
Sbjct: 370 YISSGVINLDKPANPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKS 429
Query: 159 QQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKL 217
QQGAGKEYVCV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL
Sbjct: 430 QQGAGKEYVCVIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKL 489
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMH 277
E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+H
Sbjct: 490 FEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEMDGMVTLH 549
Query: 278 DVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
DV+DAQW+ DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE
Sbjct: 550 DVLDAQWMMDNNRDESYLRRVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFE 609
Query: 338 NDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGP 397
IE+ EEVVLMTTKGEA+A+ IA+M+T ++TCDHGVVA++KR +M+RD YPRKWGLGP
Sbjct: 610 AGIEIHEEVVLMTTKGEAIAIAIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRKWGLGP 669
Query: 398 RASMKKKLIAEGKLDKHGKLNEKTPQEW 425
A KKKL ++GKLDK+G+ NEKTP +W
Sbjct: 670 VALEKKKLKSDGKLDKYGRPNEKTPAKW 697
>gi|302652454|ref|XP_003018077.1| hypothetical protein TRV_07913 [Trichophyton verrucosum HKI 0517]
gi|291181682|gb|EFE37432.1| hypothetical protein TRV_07913 [Trichophyton verrucosum HKI 0517]
Length = 494
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 292/421 (69%), Positives = 343/421 (81%), Gaps = 14/421 (3%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ P I TS+WP+LLKNYD+L VRT H+TP+PNG +PLKR L YI G+INL
Sbjct: 12 DYSIKPEAVAPPIPTSEWPLLLKNYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 72 DKPSNPSSHEVVAWMKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 131
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE L+GA+FQRPPLISAVKRQLRIRTIYESKL E+D DRHL
Sbjct: 132 CVIRLHDKIPGGEAQFARALETLSGALFQRPPLISAVKRQLRIRTIYESKLYEFDNDRHL 191
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 192 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 251
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN+RDE+YLR+VI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+ EEV
Sbjct: 252 DNHRDESYLRKVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEIYEEV 311
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 312 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 371
Query: 407 AEGKLDKHGKLNEKTPQEW-------------ARNVVLPPGGDSVVASLAAAAEQTVAEK 453
A+GKLDK+G+ N TP +W N PG + S AA + EK
Sbjct: 372 ADGKLDKYGRTNASTPAKWQAEYKDYDAQAAGTPNAAPAPGATTPAKSTPAAPAASSPEK 431
Query: 454 E 454
E
Sbjct: 432 E 432
>gi|325091764|gb|EGC45074.1| centromere/microtubule binding protein CBF5 [Ajellomyces capsulatus
H88]
Length = 490
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/443 (67%), Positives = 353/443 (79%), Gaps = 19/443 (4%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDR----LNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
D+ IKP++ TP+I TS+WP+LLKNYD+ L VRTGH+TP+P G +PLKR L YI G
Sbjct: 11 DYAIKPEAVTPAIPTSEWPLLLKNYDKRKFLLLVRTGHFTPIPAGCTPLKRDLKSYISSG 70
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAG
Sbjct: 71 VINLDKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 130
Query: 164 KEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYVCV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D
Sbjct: 131 KEYVCVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDN 190
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DA
Sbjct: 191 DRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDA 250
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
QW+ DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE+ IE+
Sbjct: 251 QWMMDNNRDESYLRRVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFESGIEI 310
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
EEVVLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPRKWGLGP A K
Sbjct: 311 HEEVVLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRKWGLGPVALEK 370
Query: 403 KKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRK 462
KKL ++GKLDK+G+ NEKTP +W +S A + AE TA V
Sbjct: 371 KKLKSDGKLDKYGRPNEKTPAKW----------NSEYKDFNAPLDSGAAEASTASVSTPA 420
Query: 463 LDA----SGDSPALNAKKAKVEE 481
A + +P +N EE
Sbjct: 421 PPAVSKEAAPTPQVNGNAPAAEE 443
>gi|167517062|ref|XP_001742872.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779496|gb|EDQ93110.1| predicted protein [Monosiga brevicollis MX1]
Length = 474
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 280/380 (73%), Positives = 332/380 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ DF+I+P P++D S+WP+LLKN++ LN+RT HYTPLPNG SPLKRP+ DY+R G+I
Sbjct: 16 SADFLIEPSRVKPTLDASKWPLLLKNFNELNIRTSHYTPLPNGCSPLKRPIHDYVRSGVI 75
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVC++RATRLVKSQQ AGKE
Sbjct: 76 NLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQNAGKE 135
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH + + ++ +ALE LTGA+FQRPPLISAVKR LR+RTIYESKLL++D +R+
Sbjct: 136 YVSIVRLHSAIEEEKQLTQALEKLTGALFQRPPLISAVKRALRVRTIYESKLLDFDKERN 195
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+ CEAGTY+RT+CVHLG +LG G HMQELRRVRSGI E D +VTMHDV+DAQW+
Sbjct: 196 LGVFWVKCEAGTYIRTLCVHLGFVLGTGAHMQELRRVRSGIQSEKDQLVTMHDVLDAQWV 255
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
DN +DE YLRRVI PLEVLL +KR+VVKD+ VNAICYGAKLM+PGLLR+ ++IEV EE
Sbjct: 256 MDNQKDETYLRRVIKPLEVLLVQHKRIVVKDSAVNAICYGAKLMLPGLLRYADNIEVDEE 315
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+GIA+MTTAVMATCDHGVVA+IKRV+M+RD YPR+WGLGPRA KKKL
Sbjct: 316 VVLITTKGEAIAVGIAQMTTAVMATCDHGVVAKIKRVIMERDVYPRQWGLGPRAQAKKKL 375
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
IA GKLDK+GK NEKTP EW
Sbjct: 376 IAAGKLDKYGKPNEKTPSEW 395
>gi|322703491|gb|EFY95099.1| hypothetical protein MAA_09426 [Metarhizium anisopliae ARSEF 23]
Length = 484
Score = 626 bits (1614), Expect = e-176, Method: Compositional matrix adjust.
Identities = 285/377 (75%), Positives = 332/377 (88%), Gaps = 1/377 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
IKPQ+ TP++DTS WP+LLKNYD+L VRTGH+TP+PNG SPLKR + YI G+INLDKP
Sbjct: 17 IKPQAVTPAVDTSSWPLLLKNYDKLLVRTGHFTPIPNGCSPLKRDIKSYISSGVINLDKP 76
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVV+W+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVCV
Sbjct: 77 SNPSSHEVVSWVKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVI 136
Query: 171 RLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLHDK+P A++ARALE LTGA+FQRPPLISAVKRQLR+RTIYESKL+E+D DRHL VF
Sbjct: 137 RLHDKLPGGQAQLARALETLTGALFQRPPLISAVKRQLRVRTIYESKLIEFDNDRHLGVF 196
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN +MVT+HDV+DAQW DN
Sbjct: 197 WVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENKHMVTLHDVLDAQWTMDNT 256
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE+YLRRVI PLE LLT YKRLVVKD+ VNA+CYGAKLM+PGLLR+E+ IE EEVVLM
Sbjct: 257 RDESYLRRVIAPLETLLTGYKRLVVKDSAVNAVCYGAKLMLPGLLRYESGIEHHEEVVLM 316
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+GI +M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL A+G
Sbjct: 317 TTKGEAIAIGITQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAQEKKKLKADG 376
Query: 410 KLDKHGKLNEKTPQEWA 426
KLDK G+ N+ TP +W
Sbjct: 377 KLDKFGRPNDSTPAKWT 393
>gi|159490678|ref|XP_001703300.1| centromere/microtubule binding protein [Chlamydomonas reinhardtii]
gi|158280224|gb|EDP05982.1| centromere/microtubule binding protein [Chlamydomonas reinhardtii]
Length = 435
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/385 (77%), Positives = 348/385 (90%), Gaps = 3/385 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+I+P+ P +DTS+WP+LLKNYD+LNVRTGHYTP+P G +PLKRPL +Y+ YG INL
Sbjct: 11 DFLIQPEKTVPKLDTSKWPLLLKNYDKLNVRTGHYTPIPAGSTPLKRPLKEYLSYGCINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK+QQ AGKEYV
Sbjct: 71 DKPANPSSHEVVAWVKRMLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKAQQAAGKEYV 130
Query: 168 CVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
C+AR H KV A V +ALE LTGA+FQRPPLISAVKRQLR+RTIY++KL EYD +RHL
Sbjct: 131 CIARFHGKVEGGTAAVNKALETLTGALFQRPPLISAVKRQLRVRTIYQAKLYEYDEERHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE--NDNMVTMHDVMDAQW 284
VFWISCEAGTYVRT+CVHLGL+LGVGGHMQELRRVRSGI+GE ++NMVTMHDV+DAQW
Sbjct: 191 AVFWISCEAGTYVRTLCVHLGLLLGVGGHMQELRRVRSGIMGEAPSNNMVTMHDVLDAQW 250
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
LYDN++DE+YLRR +MPLEVLLTS+KRLVVKD+ VNAICYGAKLMIPGLLRFE+ +EV +
Sbjct: 251 LYDNFKDESYLRRAVMPLEVLLTSFKRLVVKDSAVNAICYGAKLMIPGLLRFESGVEVDD 310
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
EVVLMTTKGEAVA+GIA+MTT VMAT DHG VA+IKRV+M+RDTYPR+WGLGP A +KKK
Sbjct: 311 EVVLMTTKGEAVAVGIAQMTTGVMATVDHGCVAKIKRVIMERDTYPRRWGLGPYAQIKKK 370
Query: 405 LIAEGKLDKHGKLNEKTPQEWARNV 429
LI EGKLDKHG+ NE TP+E+ R++
Sbjct: 371 LITEGKLDKHGRPNENTPKEYLRSL 395
>gi|358389708|gb|EHK27300.1| hypothetical protein TRIVIDRAFT_73212 [Trichoderma virens Gv29-8]
Length = 487
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 283/380 (74%), Positives = 335/380 (88%), Gaps = 1/380 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+++ IKPQ+ TP++DTSQWP+LLKNYD+L VRTGH+TP+PNG +PLKR L YI G+IN
Sbjct: 14 EEYTIKPQAVTPAVDTSQWPLLLKNYDKLLVRTGHFTPIPNGSAPLKRDLKSYISSGVIN 73
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVV+W+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 74 LDKPSNPSSHEVVSWVKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 133
Query: 167 VCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
V + RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRH
Sbjct: 134 VAIIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRH 193
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DAQW
Sbjct: 194 LGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKHLVTLHDVLDAQWT 253
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
+DN RDE+YLRRVI PLE LLT YKRLVVKD+ VNA+CYGAKLM+PGLLR+E+ IE EE
Sbjct: 254 HDNTRDESYLRRVIAPLETLLTGYKRLVVKDSAVNAVCYGAKLMLPGLLRYESGIEHHEE 313
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 314 VVLMTTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAQEKKKL 373
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK G+ N+ TP +W
Sbjct: 374 KADGKLDKFGRPNDATPSKW 393
>gi|119182719|ref|XP_001242479.1| centromere/microtubule binding protein CBF5 [Coccidioides immitis
RS]
gi|392865377|gb|EAS31158.2| centromere/microtubule-binding protein cbf5 [Coccidioides immitis
RS]
Length = 490
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/379 (75%), Positives = 331/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP++ TP I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 9 DFSIKPEAATPPIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINL 68
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 69 DKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 128
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 129 CVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 188
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 189 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEQDGMVTLHDVLDAQWMM 248
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRV+ PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEV EEV
Sbjct: 249 DNNRDESYLRRVVRPLETLLTTYKRVVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVHEEV 308
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WG+GP A KKK+
Sbjct: 309 VLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKMK 368
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK G+ N TP +W
Sbjct: 369 ADGKLDKFGRPNASTPAKW 387
>gi|303319381|ref|XP_003069690.1| centromere/microtubule-binding protein cbf5, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240109376|gb|EER27545.1| centromere/microtubule-binding protein cbf5, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 490
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/379 (75%), Positives = 331/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP++ TP I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 9 DFSIKPEAATPPIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINL 68
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 69 DKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 128
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 129 CVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 188
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 189 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEQDGMVTLHDVLDAQWMM 248
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRV+ PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEV EEV
Sbjct: 249 DNNRDESYLRRVVRPLETLLTTYKRVVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVHEEV 308
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WG+GP A KKK+
Sbjct: 309 VLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKMK 368
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK G+ N TP +W
Sbjct: 369 ADGKLDKFGRPNASTPAKW 387
>gi|224003359|ref|XP_002291351.1| hypothetical protein THAPSDRAFT_508 [Thalassiosira pseudonana
CCMP1335]
gi|220973127|gb|EED91458.1| hypothetical protein THAPSDRAFT_508 [Thalassiosira pseudonana
CCMP1335]
Length = 458
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/376 (76%), Positives = 331/376 (88%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+I P S TP +DTS WP+LLKNY L++RT HYTP+P G SPL R L D+I G+INLDK
Sbjct: 1 MIAPSSHTPKLDTSAWPLLLKNYSDLHIRTSHYTPIPCGSSPLARNLKDHISSGVINLDK 60
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
PANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVK+QQ AGKEYV V
Sbjct: 61 PANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGV 120
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLH + D ++ RA+E LTGA+FQRPPLISAVKRQLRIRTIYESKL+EYD R+L +F
Sbjct: 121 VRLHSALEDTKQLHRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDEKRNLGIF 180
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+SCEAGTYVRT+CVHLGL++G GGHMQELRRVRSG+L ENDN+VTMHDVMDAQ +YD
Sbjct: 181 WVSCEAGTYVRTLCVHLGLLVGTGGHMQELRRVRSGVLDENDNLVTMHDVMDAQHVYDTT 240
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+DE YLRRV+MPLE LLT+YKR+VVKD+ VNAICYGAKLMIPGLLRF +DI++ +EVVLM
Sbjct: 241 KDEKYLRRVVMPLETLLTNYKRIVVKDSAVNAICYGAKLMIPGLLRFADDIDINQEVVLM 300
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+GIA+MTTAVMATCDHGVVA+IKRV+M+RDTYPR+WGLGP A KK LI EG
Sbjct: 301 TTKGEAIAVGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQRKKGLIKEG 360
Query: 410 KLDKHGKLNEKTPQEW 425
KLDKHGK NEKTP+++
Sbjct: 361 KLDKHGKPNEKTPKDF 376
>gi|322701225|gb|EFY92975.1| hypothetical protein MAC_00758 [Metarhizium acridum CQMa 102]
Length = 487
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 284/376 (75%), Positives = 333/376 (88%), Gaps = 1/376 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
IKPQ+ TP++DTS WP+LLKNYD+L VRTGH+TP+PNG SPLKR + Y+ G+INLDKP
Sbjct: 17 IKPQAVTPAVDTSSWPLLLKNYDKLLVRTGHFTPIPNGCSPLKRDIKSYVSSGVINLDKP 76
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVV+W+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVCV
Sbjct: 77 SNPSSHEVVSWVKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCVI 136
Query: 171 RLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLHDK+P A++ARALE LTGA+FQRPPLISAVKRQLR+RTIYESKL+E+D DRHL VF
Sbjct: 137 RLHDKLPGGQAQLARALETLTGALFQRPPLISAVKRQLRVRTIYESKLIEFDNDRHLGVF 196
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN ++VT+HDV+DAQW DN
Sbjct: 197 WVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENKHLVTLHDVLDAQWTMDNT 256
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE+YLRRVI PLE LLT YKRLVVKD+ VNA+CYGAKLM+PGLLR+E+ IE EEVVLM
Sbjct: 257 RDESYLRRVIAPLETLLTGYKRLVVKDSAVNAVCYGAKLMLPGLLRYESGIEHHEEVVLM 316
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL A+G
Sbjct: 317 TTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAQEKKKLKADG 376
Query: 410 KLDKHGKLNEKTPQEW 425
KLDK G+ N+ TP +W
Sbjct: 377 KLDKFGRPNDSTPAKW 392
>gi|302501993|ref|XP_003012988.1| hypothetical protein ARB_00871 [Arthroderma benhamiae CBS 112371]
gi|291176549|gb|EFE32348.1| hypothetical protein ARB_00871 [Arthroderma benhamiae CBS 112371]
Length = 494
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 292/421 (69%), Positives = 343/421 (81%), Gaps = 14/421 (3%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ P I TS+WP+LLKNYD+L VRT H+TP+PNG +PLKR L YI G+INL
Sbjct: 12 DYSIKPEAVAPPIPTSEWPLLLKNYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 72 DKPSNPSSHEVVAWMKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 131
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE L+GA+FQRPPLISAVKRQLRIRTIYESKL E+D DRHL
Sbjct: 132 CVIRLHDKIPGGEAQFARALETLSGALFQRPPLISAVKRQLRIRTIYESKLYEFDNDRHL 191
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 192 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 251
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN+RDE+YLR+VI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+ EEV
Sbjct: 252 DNHRDESYLRKVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEIYEEV 311
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 312 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 371
Query: 407 AEGKLDKHGKLNEKTPQEW-------------ARNVVLPPGGDSVVASLAAAAEQTVAEK 453
A+GKLDK+G+ N TP +W N PG + S AA + EK
Sbjct: 372 ADGKLDKYGRTNASTPAKWQAEYKDYDAQAAGTPNAAPAPGAITPAKSTPAAPAASSPEK 431
Query: 454 E 454
E
Sbjct: 432 E 432
>gi|405975700|gb|EKC40249.1| H/ACA ribonucleoprotein complex subunit 4 [Crassostrea gigas]
Length = 498
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 284/420 (67%), Positives = 346/420 (82%), Gaps = 17/420 (4%)
Query: 6 LSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQW 65
++ +E+KK K+KS S D A+ +N F++KP S +DTSQW
Sbjct: 1 MAANEQKKKKRKSES-----------MDIAEVQHSEN------FLLKPSSVVEQLDTSQW 43
Query: 66 PILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRI 125
P+LLKN+D+LNVRT HYTP+P GYSPLKRP+ +Y++ G INLDKPANPSSHEVV+W+KRI
Sbjct: 44 PLLLKNFDKLNVRTAHYTPIPAGYSPLKRPIQEYLKSGFINLDKPANPSSHEVVSWVKRI 103
Query: 126 LRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARA 185
LRV+KTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGKEYVC+ +LH V D VA+
Sbjct: 104 LRVQKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYVCIFKLHSAVEDEKLVAQK 163
Query: 186 LEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
+E +TGA+FQRPPLISAVKRQLRIRTIYE K+ EY+ + + +FW+SCEAGTY+RTMCVH
Sbjct: 164 IEMMTGALFQRPPLISAVKRQLRIRTIYECKMWEYNKEDAMGIFWVSCEAGTYIRTMCVH 223
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVL 305
LGL LGVGG MQELRRVRSGI+ E + TMHDVMDAQW YD+++DE+YLRRV+ PLE L
Sbjct: 224 LGLFLGVGGQMQELRRVRSGIMSEKSQLYTMHDVMDAQWTYDHHKDESYLRRVVNPLEAL 283
Query: 306 LTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
LTS+KR+++KDT VNA+CYGAK+M+PG+LR+E+ IEV +E+V++TTKGEAVAL IA+MTT
Sbjct: 284 LTSHKRIIMKDTAVNAVCYGAKIMLPGVLRYEDGIEVNDEIVIVTTKGEAVALAIAQMTT 343
Query: 366 AVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEW 425
AVMATCDHG+VA+IKRVVM+RDTYPRKWGLGP A KKK+I EG LDK+GK NEKTP W
Sbjct: 344 AVMATCDHGIVAKIKRVVMERDTYPRKWGLGPVAMKKKKMIQEGTLDKYGKPNEKTPSNW 403
>gi|70998678|ref|XP_754061.1| pseudouridylate synthase family protein [Aspergillus fumigatus
Af293]
gi|3334142|sp|O43102.1|CBF5_ASPFU RecName: Full=Centromere/microtubule-binding protein cbf5; AltName:
Full=Centromere-binding factor 5; AltName: Full=H/ACA
snoRNP protein cbf5; AltName: Full=Small nucleolar RNP
protein cbf5
gi|2737892|gb|AAB94298.1| nucleolar protein AfCbf5p [Aspergillus fumigatus]
gi|66851697|gb|EAL92023.1| pseudouridylate synthase family protein [Aspergillus fumigatus
Af293]
gi|159126206|gb|EDP51322.1| pseudouridylate synthase family protein [Aspergillus fumigatus
A1163]
Length = 487
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 329/379 (86%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ +I T WP+LLKNYD+L VRTGH+TP+P G SPLKR L YI G+INL
Sbjct: 11 DYTIKPEAGASNISTEDWPLLLKNYDKLMVRTGHFTPIPAGCSPLKRDLKSYISSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN+ +VT+HDV+DAQW+Y
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLVTLHDVLDAQWMY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEV EEV
Sbjct: 251 DNQRDESYLRRVIQPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 311 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
+ GKLDK+G+ NE TP +W
Sbjct: 371 SAGKLDKYGRANEDTPAKW 389
>gi|315049135|ref|XP_003173942.1| centromere/microtubule-binding protein cbf5 [Arthroderma gypseum
CBS 118893]
gi|311341909|gb|EFR01112.1| centromere/microtubule-binding protein cbf5 [Arthroderma gypseum
CBS 118893]
Length = 495
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 284/379 (74%), Positives = 332/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ P I TS+WP+LLKNYD+L VRT H+TP+PNG +PLKR L YI G+INL
Sbjct: 12 DYSIKPEAVAPPIPTSEWPLLLKNYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 72 DKPSNPSSHEVVAWMKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 131
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE L+GA+FQRPPLISAVKRQLRIRTIYESKL E+D DRHL
Sbjct: 132 CVIRLHDKIPGGEAQFARALETLSGALFQRPPLISAVKRQLRIRTIYESKLYEFDNDRHL 191
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 192 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 251
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN+RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+ EEV
Sbjct: 252 DNHRDESYLRRVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIELYEEV 311
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 312 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 371
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ N TP +W
Sbjct: 372 ADGKLDKYGRTNASTPAKW 390
>gi|384246457|gb|EIE19947.1| putative rRNA pseudouridine synthase [Coccomyxa subellipsoidea
C-169]
Length = 392
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 278/362 (76%), Positives = 330/362 (91%), Gaps = 1/362 (0%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
IKP S TP +DTS+WP+LLKNYD+LNVRTGHYTP+P G++PL+RPL D++RYG+INLD
Sbjct: 9 LYIKPDSVTPKLDTSKWPLLLKNYDKLNVRTGHYTPIPAGHTPLRRPLEDHVRYGVINLD 68
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILRV KTGHSGTLDPKVTG+LIVC++RATRLVKSQQGAGKEYVC
Sbjct: 69 KPSNPSSHEVVAWIRRILRVNKTGHSGTLDPKVTGSLIVCVERATRLVKSQQGAGKEYVC 128
Query: 169 VARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ARLH KVP A V+RAL +L GA+FQRPPLISAVKRQLR+RTI++SK+LE+D DR LV
Sbjct: 129 IARLHSKVPGGAAAVSRALTSLRGALFQRPPLISAVKRQLRVRTIFDSKMLEFDEDRQLV 188
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFWISCEAGTYVRTMCVHLGL+LGVG HMQELRRVRSGI+GE DN+VTMHD++DAQW+YD
Sbjct: 189 VFWISCEAGTYVRTMCVHLGLMLGVGAHMQELRRVRSGIVGEKDNLVTMHDILDAQWVYD 248
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE+YLRR IMPLE +LT+YKRLVVKD+ VNAICYGAKLM+PGLLR+EN IEV +EVV
Sbjct: 249 NTKDESYLRRAIMPLEAVLTTYKRLVVKDSAVNAICYGAKLMLPGLLRYENGIEVDDEVV 308
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+A+GIA+MTT+ +ATCDHG A++KRVVM+RDTYPR+WGLGP AS KK++
Sbjct: 309 MITTKGEAIAIGIAQMTTSTIATCDHGCAAKVKRVVMERDTYPRRWGLGPVASKKKQMKI 368
Query: 408 EG 409
EG
Sbjct: 369 EG 370
>gi|389627558|ref|XP_003711432.1| centromere/microtubule-binding protein cbf5 [Magnaporthe oryzae
70-15]
gi|351643764|gb|EHA51625.1| centromere/microtubule-binding protein cbf5 [Magnaporthe oryzae
70-15]
gi|440468934|gb|ELQ38061.1| centromere/microtubule-binding protein cbf5 [Magnaporthe oryzae
Y34]
gi|440480562|gb|ELQ61221.1| centromere/microtubule-binding protein cbf5 [Magnaporthe oryzae
P131]
Length = 485
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 282/383 (73%), Positives = 335/383 (87%), Gaps = 1/383 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F IKP+ TP++DTS WP+LLKNYD+L++RTGH+TP+PNG +PL+R + YI G+IN
Sbjct: 19 EEFSIKPEQVTPALDTSSWPLLLKNYDKLHIRTGHFTPIPNGSTPLRRDIKSYISSGVIN 78
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 79 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 138
Query: 167 VCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
VCV RLHDKVP + ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRH
Sbjct: 139 VCVIRLHDKVPGGEPEFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRH 198
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++ T+HDV+DAQWL
Sbjct: 199 LGVFWVSCEAGTYIRTLCVHLGLMLGVGAHMQELRRVRSGAMDETKDLHTLHDVLDAQWL 258
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
DN RDE+YLR+VI PLE LLT+YKRLVVKD+ VNA+CYGAKLM+PGLLR+E DIE+ EE
Sbjct: 259 MDNTRDESYLRKVIQPLETLLTTYKRLVVKDSAVNAVCYGAKLMLPGLLRYEADIELHEE 318
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+M+T +++CDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 319 VVLMTTKGEAIAIGIAQMSTVEISSCDHGVVAKVKRCIMERDLYPRRWGLGPVAGEKKKL 378
Query: 406 IAEGKLDKHGKLNEKTPQEWARN 428
A+GKLDK G+ NE TP W +N
Sbjct: 379 KADGKLDKFGRPNEATPSRWTQN 401
>gi|384499832|gb|EIE90323.1| H/ACA ribonucleoprotein complex subunit 4 [Rhizopus delemar RA
99-880]
Length = 469
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/380 (78%), Positives = 342/380 (90%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
IKP + TPSIDTS+WP+LLKNYD+LNVRTGHYTP+P+G SPLKRPL +Y+RYGIINLDKP
Sbjct: 7 IKPTASTPSIDTSKWPLLLKNYDQLNVRTGHYTPIPSGSSPLKRPLNEYVRYGIINLDKP 66
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYVC+
Sbjct: 67 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGGLIVCVDRATRLVKSQQGAGKEYVCIL 126
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
RLHD + K+++A+E LTGA+FQRPPLISAVKRQLR+RTI+ESKLLE+D DRHL VFW
Sbjct: 127 RLHDAIESEKKLSQAIETLTGALFQRPPLISAVKRQLRVRTIHESKLLEFDNDRHLAVFW 186
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG END++VTMHDV+DAQWLYDN +
Sbjct: 187 ASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGTTSENDDIVTMHDVLDAQWLYDNTK 246
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLRRVI PLE LLT+YKR+VVKD+ VNAICYGAKLM+PGLLRFE+ IEV +E+VLMT
Sbjct: 247 DESYLRRVIRPLESLLTNYKRVVVKDSAVNAICYGAKLMVPGLLRFESGIEVNDEIVLMT 306
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEA+AL A+MTTAVMATCDHGVVA++KRV+M+RDTYPR+WGLGP A KKKL EGK
Sbjct: 307 TKGEAIALAYAQMTTAVMATCDHGVVAKVKRVIMERDTYPRRWGLGPVALAKKKLKTEGK 366
Query: 411 LDKHGKLNEKTPQEWARNVV 430
LDK+G++ E+TP W V
Sbjct: 367 LDKYGRVTEETPAVWKSTYV 386
>gi|395547747|ref|XP_003775182.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Sarcophilus
harrisii]
Length = 592
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 277/383 (72%), Positives = 336/383 (87%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP+G +PLKR + DYIR G INL
Sbjct: 35 EFFIKPESKVVQLDTSQWPLLLKNFDKLNVRTTHYTPLPSGSNPLKREITDYIRTGFINL 94
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 95 DKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYV 154
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK+LEYD ++ L
Sbjct: 155 GVIRLHNAIESEVQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMLEYDPEKRLG 214
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVH+GL+LGVGG MQELRR+RSG++GE D+MVTMHDV+DAQW YD
Sbjct: 215 IFWVSCEAGTYIRTLCVHVGLLLGVGGQMQELRRIRSGVMGEKDHMVTMHDVLDAQWQYD 274
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
NY+DE YLRRVI PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +EVV
Sbjct: 275 NYKDEGYLRRVIYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEVV 334
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 335 VITTKGEAICVAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMIK 394
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+G LDKHGK N+ TP W + V
Sbjct: 395 QGLLDKHGKPNDSTPTSWKADYV 417
>gi|169844228|ref|XP_001828835.1| centromere/microtubule binding protein cbf5 [Coprinopsis cinerea
okayama7#130]
gi|116509947|gb|EAU92842.1| centromere/microtubule binding protein cbf5 [Coprinopsis cinerea
okayama7#130]
Length = 522
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 281/382 (73%), Positives = 335/382 (87%), Gaps = 1/382 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IK +S TP +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR + Y++ G+INL
Sbjct: 18 DYAIKSESSTPKLDTSQWPLLLKNYDKLLVRSAHFTPIPSGCSPLKRDITSYVKSGVINL 77
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 78 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 137
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH +P+ A + RAL+ L+GA+FQRPPLISAVKRQLRIRTIY+SKL+E+D R+L
Sbjct: 138 CVLRLHAGLPNPAALPRALQTLSGALFQRPPLISAVKRQLRIRTIYDSKLIEFDDKRNLA 197
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGLILGVGGHMQELRRVRSG + END+MVTMHDV+DAQW+YD
Sbjct: 198 VFWVSCEAGTYIRTLCVHLGLILGVGGHMQELRRVRSGAMSENDDMVTMHDVLDAQWMYD 257
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI + EEVV
Sbjct: 258 NTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADIALNEEVV 317
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP A KKK+I
Sbjct: 318 LMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPVALKKKKMIK 377
Query: 408 EGKLDKHG-KLNEKTPQEWARN 428
+G+L KHG K+ TP EW+R+
Sbjct: 378 DGQLGKHGEKIEGVTPAEWSRD 399
>gi|145253867|ref|XP_001398446.1| centromere/microtubule-binding protein cbf5 [Aspergillus niger CBS
513.88]
gi|134084022|emb|CAL00560.1| unnamed protein product [Aspergillus niger]
Length = 485
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 292/412 (70%), Positives = 343/412 (83%), Gaps = 8/412 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ IDTS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 11 DYSIKPEASASKIDTSEWPLLLKNYDKLLVRTGHFTPIPAGSTPLKRDLKSYINSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 131 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN MVT+HDV+DAQWLY
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENSGMVTLHDVLDAQWLY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLM+PGLLRFE IEV EEV
Sbjct: 251 DNQRDESYLRKVIKPLETLLTTYKRIVVKDSAVNAVCYGAKLMVPGLLRFEAGIEVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 311 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEWARNV--VLPPGGDSVVASLAAAAEQTVAEKETA 456
+ GKLDK+G+ NE TP +W + P + A A Q VA++ETA
Sbjct: 371 SAGKLDKYGRANEATPAKWKNDYKDYSAPEEEG-----AQAVAQPVAQEETA 417
>gi|326468874|gb|EGD92883.1| centromere/microtubule binding protein CBF5 [Trichophyton tonsurans
CBS 112818]
Length = 494
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 332/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ P I TS+WP+LLKNYD+L VRT H+TP+PNG +PLKR L YI G+INL
Sbjct: 12 DYSIKPEAVAPPIPTSEWPLLLKNYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 72 DKPSNPSSHEVVAWMKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 131
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE L+GA+FQRPPLISAVKRQLRIRTIYESKL E+D DRHL
Sbjct: 132 CVIRLHDKIPGGEAQFARALETLSGALFQRPPLISAVKRQLRIRTIYESKLYEFDNDRHL 191
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 192 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 251
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN+RDE+YLR+VI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+ EEV
Sbjct: 252 DNHRDESYLRKVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEIYEEV 311
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 312 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 371
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ N TP +W
Sbjct: 372 ADGKLDKYGRTNASTPAKW 390
>gi|320165785|gb|EFW42684.1| H/ACA ribonucleoprotein complex subunit 4 [Capsaspora owczarzaki
ATCC 30864]
Length = 536
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/422 (71%), Positives = 359/422 (85%), Gaps = 4/422 (0%)
Query: 9 SEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPIL 68
S+KK KK SA+ A A ++ T + A A D+ ++P PS+DTS+WP+L
Sbjct: 20 SDKKHAKKSSATKIAAPTAGSVDTSGSAAAV----AHIPDYHLQPSKVAPSLDTSKWPLL 75
Query: 69 LKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRV 128
LKNYD+LNVRTGHYTP+P+G SPLKRP+ +Y+RYGI+NLDKPANPSSHEVVAWI+RILRV
Sbjct: 76 LKNYDQLNVRTGHYTPIPSGCSPLKRPIDEYVRYGILNLDKPANPSSHEVVAWIRRILRV 135
Query: 129 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEA 188
EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEY+ + RLH + + K+AR++E
Sbjct: 136 EKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYLGIVRLHGAIENEQKLARSIET 195
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
LTGA+FQRPPLISAVKRQLRIRTIYESKL+EYD RHL VFW+SCEAGTY+RT+CVHLGL
Sbjct: 196 LTGALFQRPPLISAVKRQLRIRTIYESKLIEYDPSRHLGVFWVSCEAGTYIRTLCVHLGL 255
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LGVGGHMQELRRVRSG+L END++VTMHD++DAQW DN RDE+YLRRV+ PLE+LL
Sbjct: 256 LLGVGGHMQELRRVRSGVLTENDHLVTMHDILDAQWQLDNNRDESYLRRVVKPLELLLVK 315
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVM 368
+KRLVVKD+ VNAIC+GAK M+PGLLRFE+ IEVGEEVVLMTTKGEA+AL IA+MTTAVM
Sbjct: 316 HKRLVVKDSAVNAICFGAKFMLPGLLRFESGIEVGEEVVLMTTKGEAIALAIAQMTTAVM 375
Query: 369 ATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
+TCDHGVVA+IKRV+M+R TYPR+WGLGP A KKKLI +G+LDK+G+ NEKTP +W +
Sbjct: 376 STCDHGVVAKIKRVIMERGTYPRRWGLGPNAVEKKKLIKDGRLDKYGRTNEKTPSDWTKK 435
Query: 429 VV 430
V
Sbjct: 436 YV 437
>gi|358373317|dbj|GAA89916.1| pseudouridylate synthase family protein [Aspergillus kawachii IFO
4308]
Length = 486
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 282/379 (74%), Positives = 331/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ + IDTS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 11 DYAIKPEASSSKIDTSEWPLLLKNYDKLLVRTGHFTPIPAGSTPLKRDLKSYINSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 131 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN MVT+HDV+DAQW+Y
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENSGMVTLHDVLDAQWMY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLM+PGLLRFE IEV EEV
Sbjct: 251 DNQRDESYLRKVIKPLETLLTTYKRIVVKDSAVNAVCYGAKLMVPGLLRFEAGIEVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 311 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
+ GKLDK+G+ NE TP +W
Sbjct: 371 SAGKLDKYGRANEATPAKW 389
>gi|119498611|ref|XP_001266063.1| centromere/microtubule binding protein cbf5 [Neosartorya fischeri
NRRL 181]
gi|119414227|gb|EAW24166.1| centromere/microtubule binding protein cbf5 [Neosartorya fischeri
NRRL 181]
Length = 487
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 282/379 (74%), Positives = 330/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ +I T +WP+LLKNYD+L VRTGH+TP+P G SPLKR L YI G+INL
Sbjct: 11 DYTIKPEAGASNISTEEWPLLLKNYDKLMVRTGHFTPIPAGCSPLKRDLKSYISSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN+ +VT+HDV+DAQW+Y
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLVTLHDVLDAQWMY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE I+V EEV
Sbjct: 251 DNQRDESYLRRVIRPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIDVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 311 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
+ GKLDK+G+ NE TP +W
Sbjct: 371 SAGKLDKYGRANEDTPAKW 389
>gi|327301387|ref|XP_003235386.1| centromere/microtubule binding protein CBF5 [Trichophyton rubrum
CBS 118892]
gi|326462738|gb|EGD88191.1| centromere/microtubule binding protein CBF5 [Trichophyton rubrum
CBS 118892]
Length = 494
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 332/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ P I TS+WP+LLKNYD+L VRT H+TP+PNG +PLKR L YI G+INL
Sbjct: 12 DYSIKPEAVAPPIPTSEWPLLLKNYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 72 DKPSNPSSHEVVAWMKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 131
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE L+GA+FQRPPLISAVKRQLRIRTIYESKL E+D DRHL
Sbjct: 132 CVIRLHDKIPGGEAQFARALETLSGALFQRPPLISAVKRQLRIRTIYESKLYEFDNDRHL 191
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 192 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 251
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN+RDE+YLR+VI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+ EEV
Sbjct: 252 DNHRDESYLRKVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEIYEEV 311
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 312 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 371
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ N TP +W
Sbjct: 372 ADGKLDKYGRTNASTPAKW 390
>gi|320581659|gb|EFW95878.1| centromere/microtubule-binding protein CBF5 [Ogataea parapolymorpha
DL-1]
Length = 473
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/384 (73%), Positives = 337/384 (87%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F+IKP+S TP+ DTS+WP+LLKNYD+L VR+GHYTP+P G SP KR L +YI G+IN
Sbjct: 4 EEFMIKPESTTPTNDTSEWPLLLKNYDKLLVRSGHYTPIPAGSSPHKRDLKNYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWVKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D ++ RALE+LTGA+FQRPPLISAVKRQLR+RTIY+SKLLE+D R L
Sbjct: 124 VCIVRLHDALEDEKEMGRALESLTGALFQRPPLISAVKRQLRVRTIYDSKLLEFDNKRGL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDVMDAQWLY
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTLHDVMDAQWLY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+ +EV
Sbjct: 244 DNSRDESYLRKVISPLETLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEEGIELYDEV 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+MTT +A+CDHGVVA++KR +M+RDTYPR+WGLGP A KK++
Sbjct: 304 VLMTTKGEAIAIGIAQMTTVDLASCDHGVVAKVKRCIMERDTYPRRWGLGPVALKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK G+ NE TP+ W + V
Sbjct: 364 ADGKLDKFGRPNENTPESWKKEYV 387
>gi|83318359|gb|AAI08889.1| LOC733436 protein [Xenopus laevis]
Length = 510
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 286/442 (64%), Positives = 356/442 (80%), Gaps = 12/442 (2%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP+S +DTSQWP+LLKN+D+LN+RT HYTP+P+G +PLKR + +YI+ G IN
Sbjct: 31 EDFLIKPESKVAQLDTSQWPLLLKNFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFIN 90
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKPANPSSHEVVAWI+RILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEY
Sbjct: 91 LDKPANPSSHEVVAWIRRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEY 150
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + RLH+ + + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L
Sbjct: 151 VGIVRLHNALENELQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRL 210
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+SCEAGTY+RT+CVH+GL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW +
Sbjct: 211 GIFWVSCEAGTYIRTLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQF 270
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN +DE+YLRRVI PLE LL S+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IE+ +E+
Sbjct: 271 DNNKDESYLRRVIFPLEKLLVSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIELNQEI 330
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RD YPRKWGLGP+AS KK +I
Sbjct: 331 VVITTKGEAICIAIALMTTAVISTCDHGIVAKIKRVIMERDIYPRKWGLGPKASQKKMMI 390
Query: 407 AEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDAS 466
+G LDKHGK NE TP +W + V D + A V K T+ D
Sbjct: 391 QKGLLDKHGKTNENTPSDWKQGYV-----DYSATPKSKQATDAVKRKHTS-------DTE 438
Query: 467 GDSPALNAKKAKVEEVVEVEKE 488
DS + K K E+V + E +
Sbjct: 439 SDSADPSTIKKKTEQVGDAESD 460
>gi|440638862|gb|ELR08781.1| centromere/microtubule-binding protein cbf5 [Geomyces destructans
20631-21]
Length = 488
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 282/379 (74%), Positives = 335/379 (88%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ P++DTS WP+LLKNYD+L VRTGH+TP+PNG +PLKR L Y+ G+INL
Sbjct: 13 DYSIKPEAVVPAVDTSTWPLLLKNYDKLLVRTGHFTPIPNGCTPLKRDLKSYVSSGVINL 72
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 73 DKPSNPSSHEVVAWVKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 132
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 133 CVIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 192
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E NMVT+HDV+DAQW+
Sbjct: 193 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKVNMVTLHDVLDAQWMS 252
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ IEV +EV
Sbjct: 253 DNTRDESYLRRVIAPLETLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRYESGIEVHDEV 312
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKK+
Sbjct: 313 VLMTTKGEAIALGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKMK 372
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ NE TP +W
Sbjct: 373 ADGKLDKYGRPNEATPAKW 391
>gi|407923102|gb|EKG16190.1| Pseudouridine synthase/archaeosine transglycosylase [Macrophomina
phaseolina MS6]
Length = 489
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 284/387 (73%), Positives = 333/387 (86%), Gaps = 1/387 (0%)
Query: 43 NATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRY 102
+A D+ IKP + TP IDTS+WP+LLKNY + R+ H+ P+P+G +P KR L YI
Sbjct: 6 SANDADYTIKPAATTPPIDTSEWPLLLKNYSHMLSRSNHFVPIPHGCAPHKRDLKSYISS 65
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+INLDKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGA
Sbjct: 66 GVINLDKPSNPSSHEVVAWVKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGA 125
Query: 163 GKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
GKEYVCV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D
Sbjct: 126 GKEYVCVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFD 185
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E DNMVT+HDV+D
Sbjct: 186 NDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMSEQDNMVTLHDVLD 245
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
AQW++DN DE+YLR VI PLE LLTSYKR+VVKD+ VNA+CYGAKLM+PGLLRF+ +IE
Sbjct: 246 AQWMHDNSMDESYLRTVISPLESLLTSYKRVVVKDSAVNAVCYGAKLMVPGLLRFDKEIE 305
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASM 401
+ EEVVLMTTKGEA+ALGIA M+T M+TCDHGVVA+IKRV+M+RD YP++WGLGP A+
Sbjct: 306 IHEEVVLMTTKGEAIALGIALMSTVEMSTCDHGVVAKIKRVIMERDLYPKRWGLGPVATE 365
Query: 402 KKKLIAEGKLDKHGKLNEKTPQEWARN 428
KKKL A+GKLDK+G+ NE TP W +N
Sbjct: 366 KKKLKADGKLDKYGRTNENTPNSWKQN 392
>gi|378730574|gb|EHY57033.1| centromere/microtubule-binding protein cbf5 [Exophiala dermatitidis
NIH/UT8656]
Length = 508
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 334/379 (88%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP++ TP+I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR + YI G+INL
Sbjct: 11 DFSIKPENSTPAIPTSEWPLLLKNYDKLLVRTGHFTPIPCGCTPLKRDIKSYISSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWVKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHD++P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDRLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E+ MVT+HDV+DAQW+
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDESKGMVTLHDVLDAQWMM 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEV EEV
Sbjct: 251 DNNRDESYLRKVISPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVHEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 311 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
++GKLDK+G+ NE TP +W
Sbjct: 371 SDGKLDKYGRPNEATPAKW 389
>gi|170084049|ref|XP_001873248.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650800|gb|EDR15040.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 505
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/382 (74%), Positives = 333/382 (87%), Gaps = 1/382 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IK +S P +DTS+WP+LLKNYD+L VR+ H+TP+P+G SPLKR + Y++ G+INL
Sbjct: 18 DFAIKSESSAPKLDTSEWPLLLKNYDKLLVRSSHFTPIPSGCSPLKRDISSYVKSGVINL 77
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 78 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 137
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH + A + RAL+ LTGA+FQRPPLISAVKRQLRIRTI+ESKLLE+D R+L
Sbjct: 138 CVLRLHSGLSTPAALPRALQTLTGALFQRPPLISAVKRQLRIRTIHESKLLEFDEKRNLG 197
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGLILGVGGHMQELRRVRSG + END+MVTMHDVMDAQWLYD
Sbjct: 198 VFWVSCEAGTYIRTLCVHLGLILGVGGHMQELRRVRSGAMSENDDMVTMHDVMDAQWLYD 257
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE L+ YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI V EEVV
Sbjct: 258 NTRDESYLRRVIRPLECLMIGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADISVHEEVV 317
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL +A+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP A KKK++
Sbjct: 318 LMTTKGEAIALAVAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPVALQKKKMVK 377
Query: 408 EGKLDKHG-KLNEKTPQEWARN 428
+GKL KHG KL+ TP EW+R+
Sbjct: 378 DGKLGKHGQKLDGVTPVEWSRD 399
>gi|392573646|gb|EIW66785.1| hypothetical protein TREMEDRAFT_40777, partial [Tremella
mesenterica DSM 1558]
Length = 500
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 284/406 (69%), Positives = 342/406 (84%), Gaps = 1/406 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ D+ IK ++ TP +DTSQWP+LLKNYD+L +R+ H+TP+P G SPLKR L YI+ G++
Sbjct: 25 SGDYSIKSEAVTPKLDTSQWPLLLKNYDKLLIRSSHFTPIPTGVSPLKRDLQTYIKSGVM 84
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 85 NLDKPSNPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 144
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVCV R HD + D + RALE LTGA+FQRPPLISAVKRQLR+RTIYESKL+E+D +R+
Sbjct: 145 YVCVVRFHDTLTDPKALPRALETLTGALFQRPPLISAVKRQLRVRTIYESKLIEHDAERN 204
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSGI GEND++VTMHDV+DAQWL
Sbjct: 205 LAVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGITGENDDIVTMHDVLDAQWL 264
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLRRVI PLE LLT++KR+VVKD+ VNA+CYGAKLMIPGLLR+E DIEV EE
Sbjct: 265 YDNTRDESYLRRVIRPLESLLTNFKRIVVKDSAVNAVCYGAKLMIPGLLRYEADIEVHEE 324
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA M+T +A+CDHGVVA++KR +M+RD YPR+WGLGP+A KKK+
Sbjct: 325 VVLMTTKGEAIAIGIAMMSTVDLASCDHGVVAKVKRCIMNRDLYPRRWGLGPKALEKKKM 384
Query: 406 IAEGKLDKHGK-LNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTV 450
+ +G+LDK+GK ++ TP W + V G L +TV
Sbjct: 385 VQKGELDKYGKTIDGVTPDGWKKEYVDYSSGQVQEGGLVPTQPETV 430
>gi|122936359|gb|AAI30043.1| LOC733436 protein [Xenopus laevis]
Length = 474
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 286/442 (64%), Positives = 356/442 (80%), Gaps = 12/442 (2%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP+S +DTSQWP+LLKN+D+LN+RT HYTP+P+G +PLKR + +YI+ G IN
Sbjct: 31 EDFLIKPESKVAQLDTSQWPLLLKNFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFIN 90
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKPANPSSHEVVAWI+RILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEY
Sbjct: 91 LDKPANPSSHEVVAWIRRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEY 150
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + RLH+ + + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L
Sbjct: 151 VGIVRLHNALENELQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRL 210
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+SCEAGTY+RT+CVH+GL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW +
Sbjct: 211 GIFWVSCEAGTYIRTLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQF 270
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN +DE+YLRRVI PLE LL S+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IE+ +E+
Sbjct: 271 DNNKDESYLRRVIFPLEKLLVSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIELNQEI 330
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RD YPRKWGLGP+AS KK +I
Sbjct: 331 VVITTKGEAICIAIALMTTAVISTCDHGIVAKIKRVIMERDIYPRKWGLGPKASQKKMMI 390
Query: 407 AEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDAS 466
+G LDKHGK NE TP +W + V D + A V K T+ D
Sbjct: 391 QKGLLDKHGKTNENTPSDWKQGYV-----DYSATPKSKQATDAVKRKHTS-------DTE 438
Query: 467 GDSPALNAKKAKVEEVVEVEKE 488
DS + K K E+V + E +
Sbjct: 439 SDSADPSTIKKKTEQVGDAESD 460
>gi|116063374|gb|AAI23285.1| LOC733436 protein [Xenopus laevis]
Length = 450
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 273/383 (71%), Positives = 336/383 (87%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S +DTSQWP+LLKN+D+LN+RT HYTP+P+G +PLKR + +YI+ G INL
Sbjct: 32 DFLIKPESKVAQLDTSQWPLLLKNFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFINL 91
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWI+RILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 92 DKPANPSSHEVVAWIRRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYV 151
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L
Sbjct: 152 GIVRLHNALENELQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRLG 211
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVH+GL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW +D
Sbjct: 212 IFWVSCEAGTYIRTLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFD 271
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE+YLRRVI PLE LL S+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IE+ +E+V
Sbjct: 272 NNKDESYLRRVIFPLEKLLVSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIELNQEIV 331
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RD YPRKWGLGP+AS KK +I
Sbjct: 332 VITTKGEAICIAIALMTTAVISTCDHGIVAKIKRVIMERDIYPRKWGLGPKASQKKMMIQ 391
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+G LDKHGK NE TP +W + V
Sbjct: 392 KGLLDKHGKTNENTPSDWKQGYV 414
>gi|165970590|gb|AAI58494.1| LOC100145077 protein [Xenopus (Silurana) tropicalis]
Length = 502
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 274/383 (71%), Positives = 336/383 (87%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S +DTSQWP+LLKN+D+LN+RT HYTP+P+G +PLKR + +YI+ G INL
Sbjct: 32 DFLIKPESKVAQLDTSQWPLLLKNFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFINL 91
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWI+RILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 92 DKPANPSSHEVVAWIRRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYV 151
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L
Sbjct: 152 GIVRLHNALENELQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRLG 211
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVH+GL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW +D
Sbjct: 212 IFWVSCEAGTYIRTLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFD 271
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE+YLRRVI PLE LL S+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IE+ +E+V
Sbjct: 272 NNKDESYLRRVIFPLEKLLVSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIELNQEIV 331
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ + +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 332 VITTKGEAICIAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQ 391
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+G LDKHGK NE TP W + V
Sbjct: 392 KGLLDKHGKPNESTPSGWKQEYV 414
>gi|258571411|ref|XP_002544509.1| centromere/microtubule-binding protein cbf5 [Uncinocarpus reesii
1704]
gi|237904779|gb|EEP79180.1| centromere/microtubule-binding protein cbf5 [Uncinocarpus reesii
1704]
Length = 488
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 286/385 (74%), Positives = 331/385 (85%), Gaps = 7/385 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP++ TP I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 9 DFSIKPEAVTPPIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINL 68
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 69 DKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 128
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 129 CVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 188
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 189 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 248
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF------ENDI 340
DN RDE+YLRRV+ PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRF + I
Sbjct: 249 DNNRDESYLRRVVRPLESLLTTYKRVVVKDSAVNAVCYGAKLMIPGLLRFGKWNSMQAGI 308
Query: 341 EVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAS 400
EV EEVVLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WG+GP A
Sbjct: 309 EVHEEVVLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGMGPVAL 368
Query: 401 MKKKLIAEGKLDKHGKLNEKTPQEW 425
KKK+ A+GKLDK G+ N TP +W
Sbjct: 369 EKKKMKADGKLDKFGRTNASTPAKW 393
>gi|336374989|gb|EGO03325.1| hypothetical protein SERLA73DRAFT_83244 [Serpula lacrymans var.
lacrymans S7.3]
Length = 526
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 279/384 (72%), Positives = 333/384 (86%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
++ IK ++ P +DTSQWP+LLK+YD+L VR+ H+TP+P+G SPLKR + YI+ G+INL
Sbjct: 20 EYSIKSEAAQPKLDTSQWPLLLKHYDKLLVRSSHFTPIPSGSSPLKRDITSYIKSGVINL 79
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 80 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 139
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH +PD + RAL+ L+GA+FQRPPLISAVKRQLRIRTIYESKLLE+D R+L
Sbjct: 140 CVLRLHSGLPDPTALPRALQTLSGALFQRPPLISAVKRQLRIRTIYESKLLEFDEKRNLG 199
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGLILGVGGHMQELRRVRSG + END++VTMHDV+DAQW+YD
Sbjct: 200 VFWVSCEAGTYIRTLCVHLGLILGVGGHMQELRRVRSGAMSENDDIVTMHDVLDAQWMYD 259
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRR I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI + EEVV
Sbjct: 260 NTRDESYLRRTIRPLESLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADIALNEEVV 319
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL I++MTT +ATCDHGVVA++KR +M+RDTYPR+WGLGP A KKK++
Sbjct: 320 LMTTKGEAIALAISQMTTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPMAVQKKKMVK 379
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV 430
+GKL KHG K+ TP EW+R+ V
Sbjct: 380 DGKLGKHGEKIEGVTPAEWSRDYV 403
>gi|358401374|gb|EHK50680.1| hypothetical protein TRIATDRAFT_129766 [Trichoderma atroviride IMI
206040]
Length = 487
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 282/383 (73%), Positives = 334/383 (87%), Gaps = 1/383 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++ IIKPQ+ TP++DTS+WP+LLKNYD L VRTGH+TP+PNG +PLKR + YI G+IN
Sbjct: 14 QEHIIKPQATTPAVDTSEWPLLLKNYDNLLVRTGHFTPIPNGSAPLKRDIKSYISSGVIN 73
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVV+W+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 74 LDKPSNPSSHEVVSWVKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 133
Query: 167 VCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
V + RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRH
Sbjct: 134 VAIIRLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRH 193
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DAQW
Sbjct: 194 LGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKHLVTLHDVLDAQWT 253
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
DN RDE+YLRRVI PLE LLT YKRLVVKD+ VNA+CYGAKLM+PGLLR+E+ IE EE
Sbjct: 254 MDNTRDESYLRRVIAPLETLLTGYKRLVVKDSAVNAVCYGAKLMLPGLLRYESGIEHHEE 313
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 314 VVLMTTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAQEKKKL 373
Query: 406 IAEGKLDKHGKLNEKTPQEWARN 428
A+GKLDK G+ N+ TP +W +
Sbjct: 374 KADGKLDKFGRPNDATPAKWTSD 396
>gi|255082488|ref|XP_002504230.1| predicted protein [Micromonas sp. RCC299]
gi|226519498|gb|ACO65488.1| predicted protein [Micromonas sp. RCC299]
Length = 477
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 318/449 (70%), Positives = 359/449 (79%), Gaps = 38/449 (8%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRL------------------------NVRTGHYT 83
DF I P+ TP++D S+WP+LLKNYD+L VRTGHYT
Sbjct: 16 DFAIAPEKITPTLDASKWPLLLKNYDKLMREFARVSHPPPSDRRPVAAPRSPQVRTGHYT 75
Query: 84 PLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG 143
P+P G+SPLKRPL +YIRYG+INLDKPANPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG
Sbjct: 76 PIPCGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWLKRMLRVEKTGHSGTLDPKVTG 135
Query: 144 NLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVA--RALEALTGAVFQRPPLIS 201
LIVCIDRATRLVK+QQGAGKEYVC+ RLH P+ K A RA+E LTGA+FQRPPLIS
Sbjct: 136 GLIVCIDRATRLVKAQQGAGKEYVCICRLHG-APEGGKTAVQRAIETLTGALFQRPPLIS 194
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLRIRTIYESK+ EYD +R+LVVFWISCEAGTYVRTMCVHLGL+LGVGGHMQELRR
Sbjct: 195 AVKRQLRIRTIYESKMYEYDEERNLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRR 254
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGILGE DN+VTMHDVMDA W++DN + E YLRRV+MPLEVLLT+YKR+VVKD+ VNA
Sbjct: 255 VRSGILGEKDNLVTMHDVMDAMWVHDNLKQEDYLRRVVMPLEVLLTNYKRVVVKDSAVNA 314
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
ICYGAKLMIPGLLR+E IEVGEEVVLMTTKGEA+A+GIA+M TAVMATCDHG VA+IKR
Sbjct: 315 ICYGAKLMIPGLLRYEAGIEVGEEVVLMTTKGEAIAVGIAQMNTAVMATCDHGCVAKIKR 374
Query: 382 VVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVAS 441
VVM+RDTYPR+WGLGP A KKKLIAEGKLDK GK N+KTP E+ R V D+ A
Sbjct: 375 VVMERDTYPRRWGLGPTAQAKKKLIAEGKLDKFGKPNDKTPAEYLRAV-----PDANGAK 429
Query: 442 LAAAAEQTVAEKETAGVKKRKLDASGDSP 470
A E+ E+ D SGDSP
Sbjct: 430 AKDAGERDKRERSPGA------DVSGDSP 452
>gi|406864846|gb|EKD17889.1| centromere/microtubule binding protein CBF5 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 503
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/408 (71%), Positives = 342/408 (83%), Gaps = 4/408 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ TP+ D+S+WP+LLKNY L VRTGH+TP+P G +PL R L YI G+INL
Sbjct: 11 DYTIKPEAVTPAADSSEWPLLLKNYTNLLVRTGHFTPIPVGCNPLNRDLKSYISSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWVKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E MVT+HDV+DAQW+
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKGMVTLHDVLDAQWMQ 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ IEV EEV
Sbjct: 251 DNTRDESYLRRVISPLETLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRYESGIEVHEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKK+
Sbjct: 311 VLMTTKGEAIALGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKMK 370
Query: 407 AEGKLDKHGKLNEKTPQEW---ARNVVLPPGGDSVVASLAAAAEQTVA 451
A+GKLDK+G+ NE TP +W ++ P G AS A A +T A
Sbjct: 371 ADGKLDKYGRPNEATPAKWNTDYKDFNAPLEGGEAPASSAMVAPETPA 418
>gi|366999504|ref|XP_003684488.1| hypothetical protein TPHA_0B03820 [Tetrapisispora phaffii CBS 4417]
gi|357522784|emb|CCE62054.1| hypothetical protein TPHA_0B03820 [Tetrapisispora phaffii CBS 4417]
Length = 478
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 276/385 (71%), Positives = 334/385 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
++D++IKP+S PS +TS+WP+LLKNYD+L VR+GHYTP+P+G +PLKR L YI G+I
Sbjct: 2 SQDYVIKPESVAPSSETSEWPLLLKNYDKLLVRSGHYTPIPSGSAPLKRDLKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D ++ R LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG LGE+DNMVT+HDVMDAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALGESDNMVTLHDVMDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLMTTKGEAIAVAIAQMSTVDLASCDHGVVATVKRCIMERDLYPRRWGLGPIAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK G++NE TP EW + V
Sbjct: 362 KADGKLDKFGRVNENTPAEWKKEYV 386
>gi|125586407|gb|EAZ27071.1| hypothetical protein OsJ_11000 [Oryza sativa Japonica Group]
Length = 593
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 322/483 (66%), Positives = 364/483 (75%), Gaps = 34/483 (7%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
A A ++IKPQS P +DTS WP+LLKNYDRLNVRTGHYTPLP RPL +
Sbjct: 49 AKADGYLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPG------RPLPAQAAHR 102
Query: 104 IINLDKPA----------NPSSHEVVAWIKRILRVEKTGHS-GTLDPKVTGNLIVCIDRA 152
+ PA NPSSHEVVA + + GTLDPKVT
Sbjct: 103 RV---PPATASSTSTSRGNPSSHEVVAPGSSASSASRRPATAGTLDPKVTRQPHRLRRPR 159
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
RLVKSQQGAGKEYVCVAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTI
Sbjct: 160 HRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTI 219
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YESKLLE+D DRHL VFWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGILGE DN
Sbjct: 220 YESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGETDN 279
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
MVTMHDVMDA+W DN+ DE+YLRR++MPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPG
Sbjct: 280 MVTMHDVMDARWAMDNFNDESYLRRIVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPG 339
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
LLRFEN+IEVGEEVVLMTTKGEA+A+GIAEMTTAVMATCDHG VA+IKRVVMDRDTYPRK
Sbjct: 340 LLRFENEIEVGEEVVLMTTKGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRK 399
Query: 393 WGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAE----- 447
WGLGP A KKK++AEG LDKHGK NEKTP EW RN VLP GGD+++A +AAA E
Sbjct: 400 WGLGPVALKKKKMVAEGLLDKHGKPNEKTPSEWLRNAVLPAGGDAMIAGIAAAPEPEKPK 459
Query: 448 ----QTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVK-EDEAE 502
VAE+ KK+ D +GD NA + + +V + + +V KK+K E+EA+
Sbjct: 460 VKEEADVAEETKEKKKKKHKDWAGD----NADEGRKRKVGDDDLSASVSAKKIKVEEEAD 515
Query: 503 EIE 505
+E
Sbjct: 516 AVE 518
>gi|169765275|ref|XP_001817109.1| centromere/microtubule-binding protein cbf5 [Aspergillus oryzae
RIB40]
gi|238503428|ref|XP_002382947.1| pseudouridylate synthase family protein [Aspergillus flavus
NRRL3357]
gi|83764963|dbj|BAE55107.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220690418|gb|EED46767.1| pseudouridylate synthase family protein [Aspergillus flavus
NRRL3357]
Length = 488
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 328/379 (86%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP+S +I TS WP+LLKNYD+L VRTGH+TP+P G SPLKR L YI G+INL
Sbjct: 11 DYTIKPESGASNISTSDWPLLLKNYDKLLVRTGHFTPIPAGCSPLKRDLKSYINSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDKIPGGEAQFRRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN +VT+HDV+DAQW+Y
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENSGLVTLHDVLDAQWMY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE I+V EEV
Sbjct: 251 DNQRDESYLRKVIKPLETLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIDVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+ IA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 311 VLMTTKGEAIAIAIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
+ GKLDK+G+ NE TP +W
Sbjct: 371 SAGKLDKYGRANEATPAKW 389
>gi|402074182|gb|EJT69711.1| centromere/microtubule-binding protein cbf5 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 477
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 279/380 (73%), Positives = 336/380 (88%), Gaps = 1/380 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+++ IKP+ TPS+DTS WP+LLKNYD+L+VRTGH+TP+P+G +PL+R + YI G+IN
Sbjct: 11 EEYSIKPEQVTPSLDTSNWPLLLKNYDKLHVRTGHFTPIPSGSTPLRRDIKSYISSGVIN 70
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEY
Sbjct: 71 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEY 130
Query: 167 VCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
VCV R+HDKVP + ARALE LTGA+FQRPPLISAVKRQLRIRT++ESKL+E+D DRH
Sbjct: 131 VCVIRMHDKVPGGQPEFARALEHLTGALFQRPPLISAVKRQLRIRTVHESKLIEFDNDRH 190
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DAQWL
Sbjct: 191 LGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTLHDVLDAQWL 250
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
DN RDE+YLRRVI PLE LLT+YKRLVVKD+ VNA+CYGAKLM+PGLLR+E DIE+ EE
Sbjct: 251 MDNARDESYLRRVIQPLETLLTTYKRLVVKDSAVNAVCYGAKLMLPGLLRYETDIELHEE 310
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+M+T +++CDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 311 VVLMTTKGEAIAIGIAQMSTVEISSCDHGVVAKVKRCIMERDLYPRRWGLGPVAGEKKKL 370
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ N +TP +W
Sbjct: 371 KADGKLDKYGRPNAETPAKW 390
>gi|255720224|ref|XP_002556392.1| KLTH0H12078p [Lachancea thermotolerans]
gi|238942358|emb|CAR30530.1| KLTH0H12078p [Lachancea thermotolerans CBS 6340]
Length = 484
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 277/415 (66%), Positives = 345/415 (83%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+++++IKP++ P+ D S+WP+LLKNYD+L VR+GHYTP+P G SP KR L YI G+I
Sbjct: 2 SEEYLIKPENVAPTTDASEWPLLLKNYDKLLVRSGHYTPIPTGSSPHKRDLKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D +R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDTNRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDVMDAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTLHDVMDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLLGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+ IA+M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLMTTKGEAIAIAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPVAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKK 460
A+GKLDK+G++NE+TP++W ++ V G + E A ++A V++
Sbjct: 362 KADGKLDKYGRVNEQTPEDWKKSYVSHEGDQPAAQVSSTVTESVSATSDSAPVQE 416
>gi|397574046|gb|EJK48998.1| hypothetical protein THAOC_32164 [Thalassiosira oceanica]
Length = 453
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 286/423 (67%), Positives = 349/423 (82%), Gaps = 5/423 (1%)
Query: 8 RSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDF-----IIKPQSFTPSIDT 62
+S+ + H+ + ++ +N + + N A+D +I+P TP +DT
Sbjct: 9 QSKPQNHRSRISTVSIENYVETIADKHSSKKRKAENGEAEDSGGAQPMIEPSKHTPKLDT 68
Query: 63 SQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWI 122
S WP+LLKNY L++RT HYTP+P G SPL R L D+I G+INLDKPANPSSHEVV+WI
Sbjct: 69 SNWPLLLKNYSDLHIRTSHYTPIPCGSSPLARNLKDHISSGVINLDKPANPSSHEVVSWI 128
Query: 123 KRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKV 182
KRILRVEKTGHSGTLDPKVTG LIVC+DRATRLVK+QQ AGKEY+ V RLH + D K+
Sbjct: 129 KRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQSAGKEYIGVVRLHSAIDDNKKL 188
Query: 183 ARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTM 242
RA+E LTGA+FQRPPLISAVKRQLRIRTIYESKL+EYD R+L +FW+SCEAGTYVRT+
Sbjct: 189 HRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDDQRNLGIFWVSCEAGTYVRTL 248
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
CVHLGL++G GGHMQELRRVRSG++ E DN+VTMHDVMDAQ ++D +DE YLRRV+MPL
Sbjct: 249 CVHLGLLVGTGGHMQELRRVRSGVMAEKDNLVTMHDVMDAQHVFDTTKDEKYLRRVVMPL 308
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362
EVLLT+YKR+VVKD+ VNAICYGAKLMIPGLLRF +DI++ +EVVLMTTKGEA+A+GIA+
Sbjct: 309 EVLLTNYKRVVVKDSAVNAICYGAKLMIPGLLRFADDIDINQEVVLMTTKGEAIAVGIAQ 368
Query: 363 MTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTP 422
MTTAVMATCDHGVVA+IKRV+M+RDTYPR+WGLG A+ KK LI EGKLD++GK+NEKTP
Sbjct: 369 MTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGAMATRKKALIKEGKLDRYGKVNEKTP 428
Query: 423 QEW 425
+++
Sbjct: 429 KDF 431
>gi|384490232|gb|EIE81454.1| H/ACA ribonucleoprotein complex subunit 4 [Rhizopus delemar RA
99-880]
Length = 479
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/394 (75%), Positives = 345/394 (87%), Gaps = 9/394 (2%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A + IKP + TPSIDTS+WP+LLKNYD+LNVRTGHYTP+P+G SPLKRPL +Y+RYG+I
Sbjct: 2 ADESTIKPTASTPSIDTSKWPLLLKNYDQLNVRTGHYTPIPSGSSPLKRPLDEYVRYGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGGLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + K+++A+E LTGA+FQRPPLISAVKRQLR+RTI+ESKLLE+D DRH
Sbjct: 122 YVCILRLHDAIESEKKLSQAIETLTGALFQRPPLISAVKRQLRVRTIHESKLLEFDNDRH 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG---------ILGENDNMVTM 276
L VFW SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG ++ E+D++VTM
Sbjct: 182 LAVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGTTSENVCEKMISEHDDIVTM 241
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF 336
HDV+DAQWLYDN +DE YLRRVI PLE LLTSYKR+VVKD+ VNAICYGAKLM+PGLLRF
Sbjct: 242 HDVLDAQWLYDNTKDETYLRRVIRPLESLLTSYKRVVVKDSAVNAICYGAKLMVPGLLRF 301
Query: 337 ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG 396
E+ IEV +E+VLMTTKGEA+AL A+MTTAVMATCDHGVVA++KRV+M+RDTYPR+WGLG
Sbjct: 302 ESGIEVNDEIVLMTTKGEAIALAYAQMTTAVMATCDHGVVAKVKRVIMERDTYPRRWGLG 361
Query: 397 PRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
P A KKKL EGKLDK+G++ E+TP W V
Sbjct: 362 PVALAKKKLKTEGKLDKYGRVTEETPAVWKSTYV 395
>gi|156839487|ref|XP_001643434.1| hypothetical protein Kpol_487p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156114044|gb|EDO15576.1| hypothetical protein Kpol_487p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 470
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 278/385 (72%), Positives = 334/385 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ D++IKP+S PS DTS+WP+LLKNYD+L VR+GHYTP+P G SPLKR L Y+ G+I
Sbjct: 2 STDYVIKPESVEPSSDTSEWPLLLKNYDKLLVRSGHYTPIPAGASPLKRDLKSYVSSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG LGENDNMVT+HDVMDAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALGENDNMVTLHDVMDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP EW + V
Sbjct: 362 KADGKLDKYGRVNENTPSEWKKEYV 386
>gi|367010868|ref|XP_003679935.1| hypothetical protein TDEL_0B05950 [Torulaspora delbrueckii]
gi|359747593|emb|CCE90724.1| hypothetical protein TDEL_0B05950 [Torulaspora delbrueckii]
Length = 477
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 279/385 (72%), Positives = 335/385 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+K+ IIKP+S PS DTS+WP+LLKNYD+L VR+GHYTP+P G SPLKR L Y+ G+I
Sbjct: 2 SKEHIIKPESTGPSADTSEWPLLLKNYDKLLVRSGHYTPIPVGSSPLKRDLKSYVSSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L END+MVT+HDV+DAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDDMVTLHDVLDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLRR+I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ IE+ +E
Sbjct: 242 YDNTRDESYLRRIIKPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEDGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLITTKGEAIAVAIAQMSTVDLATCDHGVVAQVKRCIMERDLYPRRWGLGPIAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK G++NE TP+EW +N V
Sbjct: 362 KADGKLDKFGRVNESTPEEWKKNYV 386
>gi|363748258|ref|XP_003644347.1| hypothetical protein Ecym_1291 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887979|gb|AET37530.1| hypothetical protein Ecym_1291 [Eremothecium cymbalariae
DBVPG#7215]
Length = 447
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 276/383 (72%), Positives = 333/383 (86%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+ IKP++ PS DTS+WP+LLKNYD+L VR+GHYTP+PNG SPLKR L Y+ G+INL
Sbjct: 4 EHFIKPENVVPSTDTSEWPLLLKNYDKLLVRSGHYTPIPNGASPLKRDLKSYVSSGVINL 63
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 64 DKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 123
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD + D ++ RALE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+L
Sbjct: 124 CIVRLHDALKDEKELGRALENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNLG 183
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDV+DAQW+YD
Sbjct: 184 VFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTLHDVLDAQWVYD 243
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +EVV
Sbjct: 244 NTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEVV 303
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+ IA+M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP A KK+L A
Sbjct: 304 LITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPVAQKKKQLKA 363
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+GKLDK+G++NE TP++W + V
Sbjct: 364 DGKLDKYGRVNENTPEDWKKGYV 386
>gi|392571640|gb|EIW64812.1| putative rRNA pseudouridine synthase [Trametes versicolor FP-101664
SS1]
Length = 520
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 282/390 (72%), Positives = 333/390 (85%), Gaps = 3/390 (0%)
Query: 44 ATAK---DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYI 100
ATA+ ++ IKP++ P +DTSQWP+LLKNYD+L VR+ H+TP+P G SPLKR + Y+
Sbjct: 13 ATAQLSGEYAIKPENAQPKLDTSQWPLLLKNYDKLLVRSAHFTPIPAGCSPLKRDIATYV 72
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
+ G+INLDKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ
Sbjct: 73 KSGVINLDKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQ 132
Query: 161 GAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
GAGKEYV V RLH + + RA+ LTGA+FQRPPLISAVKRQLR+RTIYESKLLE+
Sbjct: 133 GAGKEYVAVLRLHSPLSTPTALPRAISTLTGALFQRPPLISAVKRQLRVRTIYESKLLEF 192
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
D R+L VFW+SCEAGTY+RT+CVHLGLILGVGGHMQELRRVRSG L END+MVTMHDV+
Sbjct: 193 DEKRNLGVFWVSCEAGTYIRTLCVHLGLILGVGGHMQELRRVRSGALSENDDMVTMHDVL 252
Query: 281 DAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDI 340
DAQW+YDN RDE YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI
Sbjct: 253 DAQWVYDNTRDETYLRRVIRPLESLLIGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADI 312
Query: 341 EVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAS 400
+ EEVVLMTTKGEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP+A
Sbjct: 313 SLNEEVVLMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPKAM 372
Query: 401 MKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
KKK+I +GKL K G+ E TP EW+R+ V
Sbjct: 373 EKKKMIKDGKLGKFGEKTEATPAEWSRDYV 402
>gi|121712588|ref|XP_001273905.1| centromere/microtubule binding protein cbf5 [Aspergillus clavatus
NRRL 1]
gi|119402058|gb|EAW12479.1| centromere/microtubule binding protein cbf5 [Aspergillus clavatus
NRRL 1]
Length = 487
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 279/379 (73%), Positives = 330/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ +I T +WP+LLKNYD+L VRTGH+TP+P G SPLKR L Y+ G+INL
Sbjct: 11 DYTIKPEAGASNISTEEWPLLLKNYDKLLVRTGHFTPIPAGCSPLKRDLKSYVSSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 131 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN+ +VT+HDV+DAQW+Y
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLVTLHDVLDAQWMY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE I+V EEV
Sbjct: 251 DNQRDESYLRRVISPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIDVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 311 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
+ GKLDK+G+ NE TP +W
Sbjct: 371 SAGKLDKYGRTNEATPAKW 389
>gi|340522839|gb|EGR53072.1| predicted protein [Trichoderma reesei QM6a]
Length = 484
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 283/385 (73%), Positives = 332/385 (86%), Gaps = 1/385 (0%)
Query: 42 NNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIR 101
N ++ IIKPQ+ TP +DTS+WP+LLKNYD L VRTGH+TP+PNG +PLKR L YI
Sbjct: 6 NKKEQEEHIIKPQAVTPPVDTSKWPLLLKNYDNLLVRTGHFTPIPNGSAPLKRDLKSYIS 65
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
G+INLDKP+NPSSHEVV+W+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQG
Sbjct: 66 SGVINLDKPSNPSSHEVVSWVKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQG 125
Query: 162 AGKEYVCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
AGKEYV + RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+
Sbjct: 126 AGKEYVAIIRLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEF 185
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+
Sbjct: 186 DNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKHLVTLHDVL 245
Query: 281 DAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDI 340
DAQW DN RDE+YLRRVI PLE LL YKRLVVKD+ VNA+CYGAKLM+PGLLR+E+ I
Sbjct: 246 DAQWTMDNTRDESYLRRVIKPLETLLLGYKRLVVKDSAVNAVCYGAKLMLPGLLRYESGI 305
Query: 341 EVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAS 400
E EEVVLMTTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A
Sbjct: 306 EHHEEVVLMTTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAQ 365
Query: 401 MKKKLIAEGKLDKHGKLNEKTPQEW 425
KKKL A+GKLDK G+ N+ TP +W
Sbjct: 366 EKKKLKADGKLDKFGRPNDATPAKW 390
>gi|255943739|ref|XP_002562637.1| Pc20g00750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587372|emb|CAP85404.1| Pc20g00750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 473
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 287/410 (70%), Positives = 338/410 (82%), Gaps = 4/410 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ PS+DTS WP+LLKNY++L VRTGH+TP+P G SPL R L YI G+INL
Sbjct: 10 DYAIKPEASVPSVDTSDWPLLLKNYEKLLVRTGHFTPIPAGSSPLSRDLKSYISSGVINL 69
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 70 DKPSNPSSHEVVAWMKRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 129
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESK E+D +RHL
Sbjct: 130 CVIRLHDKIPGGEAQFVRALETLTGALFQRPPLISAVKRQLRIRTIHESKNYEFDNERHL 189
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG +GE + MVT+HDVMDAQW+Y
Sbjct: 190 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMGEGEGMVTLHDVMDAQWVY 249
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLT YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE EEV
Sbjct: 250 DNNRDESYLRKVISPLESLLTGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEAGIECHEEV 309
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T + TCDHGVVA++KR +M+RD YPR+WGLGP A KKK+
Sbjct: 310 VLMTTKGEAIAIGIAQMSTVELTTCDHGVVAKVKRCIMERDLYPRRWGLGPTALEKKKMK 369
Query: 407 AEGKLDKHGKLNEKTPQEW---ARNVVLPPGGDSVVASLAAAAEQTVAEK 453
G LDK+G+ N+ TP +W ++ LP G + VA A +T A K
Sbjct: 370 TAGTLDKYGRPNDATPAQWKSEYKDFNLPITGTAAVAPSAETKTETEAPK 419
>gi|412990248|emb|CCO19566.1| predicted protein [Bathycoccus prasinos]
Length = 405
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 280/369 (75%), Positives = 323/369 (87%), Gaps = 1/369 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F+IKP + D S WP+LLKNYDRL VRTGHYTP+P GYSPLKRP+ +YIRYG+INL
Sbjct: 3 EFMIKPSDESQVYDASTWPLLLKNYDRLMVRTGHYTPIPCGYSPLKRPISEYIRYGVINL 62
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG+LIVCIDRATRLVK+QQGAGKEYV
Sbjct: 63 DKPANPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGSLIVCIDRATRLVKAQQGAGKEYV 122
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
C+ RLH D V RA+E LTGA+FQRPPLISAVKRQLRIRTIY SKLL+YD +R+L
Sbjct: 123 CICRLHASPKDGKTSVERAIETLTGALFQRPPLISAVKRQLRIRTIYASKLLDYDAERNL 182
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGLILGVGGHMQELRRVRSG+ ENDN+VTMHDV+DAQW
Sbjct: 183 CVFWVSCEAGTYIRTLCVHLGLILGVGGHMQELRRVRSGVCDENDNLVTMHDVLDAQWCR 242
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN + E YLRRV+MPLEVLLT++KRLVVKD+ VNAICYGAKLMIPGLLR+E+ +EVGEE
Sbjct: 243 DNLQKEDYLRRVVMPLEVLLTNFKRLVVKDSAVNAICYGAKLMIPGLLRYESGVEVGEEC 302
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
+L+TTKGEA+A A+M TA+MATCDHG VA++KRVVM+RDTYPR+WGLGP A KKK +
Sbjct: 303 ILITTKGEAIATATAQMNTAIMATCDHGCVAKVKRVVMERDTYPRRWGLGPTAVAKKKSV 362
Query: 407 AEGKLDKHG 415
A+G +DK G
Sbjct: 363 ADGTMDKFG 371
>gi|45184817|ref|NP_982535.1| AAL007Cp [Ashbya gossypii ATCC 10895]
gi|44980426|gb|AAS50359.1| AAL007Cp [Ashbya gossypii ATCC 10895]
gi|374105734|gb|AEY94645.1| FAAL007Cp [Ashbya gossypii FDAG1]
Length = 485
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 276/385 (71%), Positives = 334/385 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+++ +IKP++ PS DTS+WP+LLKNYD+L VR+GHYTP+P G SPLKR L Y+ G+I
Sbjct: 2 SEEHMIKPENVAPSADTSEWPLLLKNYDKLLVRSGHYTPIPAGASPLKRDLKSYVSSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R LE LTGA+FQRPPLISAVKRQLR+RTIY+SKL+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRELENLTGALFQRPPLISAVKRQLRVRTIYDSKLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDV+DAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALDENDNMVTLHDVLDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP A KK+L
Sbjct: 302 VVLITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPVAQKKKQL 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 362 KADGKLDKYGRVNENTPEDWKKTYV 386
>gi|297740386|emb|CBI30568.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 318/443 (71%), Positives = 338/443 (76%), Gaps = 81/443 (18%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKD--FIIKPQSFTP 58
M+E+ELSRSEKKK K KS T+ D ++ T KD F+IKPQSFTP
Sbjct: 1 MSELELSRSEKKKKKNKSR------------TEALDVVEFGSDPTQKDGEFLIKPQSFTP 48
Query: 59 SIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEV 118
S+DTSQWPILLKNYDRLNVRTGHYTPLP+GYSPLKRPL +YIRYGI+NLDKPANPSSHEV
Sbjct: 49 SLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEV 108
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKRILRVEKTGHSGTLDPKVTGNLIV +PD
Sbjct: 109 VAWIKRILRVEKTGHSGTLDPKVTGNLIV----------------------------LPD 140
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
VAKVARALE LTGAVFQRPPLISAVKRQLRIRTIYE
Sbjct: 141 VAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYER----------------------- 177
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
HMQELRRVRSGILGE DNMVTMHDVMDAQW+YDNYRDE+YLRRV
Sbjct: 178 ----------------HMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRV 221
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
IMPLEV+LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFEN+IE GEEVVLMTTKGEA+AL
Sbjct: 222 IMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIAL 281
Query: 359 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLN 418
GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRA+MKKKLI EGKL+KHGK N
Sbjct: 282 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAAMKKKLITEGKLNKHGKPN 341
Query: 419 EKTPQEWARNVVLPPGGDSVVAS 441
E TP EW RNVVLP GGDS+VAS
Sbjct: 342 ENTPSEWLRNVVLPTGGDSMVAS 364
>gi|350634095|gb|EHA22459.1| rRNA pseudouridine synthase [Aspergillus niger ATCC 1015]
Length = 493
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 291/420 (69%), Positives = 343/420 (81%), Gaps = 16/420 (3%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ IDTS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 11 DYSIKPEASASKIDTSEWPLLLKNYDKLLVRTGHFTPIPAGSTPLKRDLKSYINSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 131 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN MVT+HDV+DAQW+Y
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENSGMVTLHDVLDAQWMY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF--------EN 338
DN RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLM+PGLLRF E
Sbjct: 251 DNQRDESYLRKVIKPLETLLTTYKRIVVKDSAVNAVCYGAKLMVPGLLRFGKILSSPYEA 310
Query: 339 DIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPR 398
IEV EEVVLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP
Sbjct: 311 GIEVNEEVVLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPV 370
Query: 399 ASMKKKLIAEGKLDKHGKLNEKTPQEWARNV--VLPPGGDSVVASLAAAAEQTVAEKETA 456
A KKKL + GKLDK+G+ NE TP +W + P + A A Q VA++ETA
Sbjct: 371 ALEKKKLKSAGKLDKYGRANEATPAKWKNDYKDYSAPEEEG-----AQAVAQPVAQEETA 425
>gi|254569894|ref|XP_002492057.1| Pseudouridine synthase catalytic subunit of box H/ACA small
nucleolar ribonucleoprotein particles [Komagataella
pastoris GS115]
gi|238031854|emb|CAY69777.1| Pseudouridine synthase catalytic subunit of box H/ACA small
nucleolar ribonucleoprotein particles [Komagataella
pastoris GS115]
gi|328351452|emb|CCA37851.1| H/ACA ribonucleoprotein complex subunit 4 [Komagataella pastoris
CBS 7435]
Length = 482
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 277/383 (72%), Positives = 333/383 (86%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ TPS DTS WP+LLKNYD+L VR+GHYTP+P+G SPLKR L DYI G+INL
Sbjct: 5 DYTIKPEAVTPSNDTSDWPLLLKNYDKLLVRSGHYTPIPHGCSPLKRDLKDYISSGVINL 64
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG L+VCIDRATRLVKSQQGAGKEYV
Sbjct: 65 DKPSNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLLVCIDRATRLVKSQQGAGKEYV 124
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLHD + + ++ ++LE LTGA+FQRPPLISAVKRQLR+RTIY+SKLLE+D R L
Sbjct: 125 CVVRLHDALENEKELGKSLENLTGALFQRPPLISAVKRQLRVRTIYDSKLLEFDNKRGLG 184
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDVMDAQW+YD
Sbjct: 185 VFWASCEAGTYMRTLCVHLGMMLGVGGHMQELRRVRSGALSENDNLVTLHDVMDAQWVYD 244
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLM+PGLLR+E IE+ +EVV
Sbjct: 245 NSRDETYLRKIIHPLETLLIGYKRVVVKDSAVNAVCYGAKLMLPGLLRYEEGIELYDEVV 304
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+GIA+MTT +++CDHGVVA++KR +M+RDTYPR+WGLGP A KK+L A
Sbjct: 305 LITTKGEAIAIGIAQMTTVDLSSCDHGVVAKVKRCIMERDTYPRRWGLGPIALKKKQLKA 364
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+GKLDK G++NE TP W + +
Sbjct: 365 DGKLDKFGRVNENTPDSWKSDYI 387
>gi|323347402|gb|EGA81673.1| Cbf5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 471
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>gi|255728133|ref|XP_002548992.1| centromere/microtubule-binding protein CBF5 [Candida tropicalis
MYA-3404]
gi|240133308|gb|EER32864.1| centromere/microtubule-binding protein CBF5 [Candida tropicalis
MYA-3404]
Length = 480
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 274/379 (72%), Positives = 335/379 (88%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+D++IKP+S +PS DTS+WP+LLKNYD+L VR+GHYTP+P G +PL R + YI+ G+IN
Sbjct: 4 EDYVIKPESVSPSNDTSEWPLLLKNYDKLLVRSGHYTPIPAGSAPLNRDIRSYIQSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHDK+ D ++ RALE LTGA+FQRPPLISAVKRQLR+RT+Y+S L+E+D R L
Sbjct: 124 VCIVRLHDKLADDKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSNLIEFDNKRGL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + ENDNMVT+HDV+DAQ++Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSENDNMVTLHDVLDAQYVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+ +EV
Sbjct: 244 DNTRDESYLRKIIQPLETLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEEGIELYDEV 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T + +CDHGVVA++KR +M+RDTYPR+WGLGP A KK+L
Sbjct: 304 VLMTTKGEAIAIGIAQMSTVDLQSCDHGVVAKVKRCIMERDTYPRRWGLGPIAQKKKQLK 363
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G++NE TP+ W
Sbjct: 364 ADGKLDKYGRVNENTPENW 382
>gi|66359506|ref|XP_626931.1| Cbf5p; centromere-binding factor 5 like PUA domain containing
protein with a type I pseudouridine synthase domain
[Cryptosporidium parvum Iowa II]
gi|46228344|gb|EAK89243.1| Cbf5p; centromere-binding factor 5 like PUA domain containing
protein with a type I pseudouridine synthase domain
[Cryptosporidium parvum Iowa II]
Length = 520
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 279/378 (73%), Positives = 327/378 (86%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKP+S + IDTS WP+LLKNY +LNVRTGHYTPLP G SPL R L DY+ YGIINLDK
Sbjct: 20 VIKPESKSQPIDTSNWPLLLKNYSKLNVRTGHYTPLPYGNSPLNRNLADYLSYGIINLDK 79
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
PANPSSHEVVAWIK+ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ AGKEYVC+
Sbjct: 80 PANPSSHEVVAWIKKILRCEKTGHSGTLDPKVTGCLLVCLNRATRLVKSQQSAGKEYVCI 139
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
R H V + V+R LE LTGA+FQRPP+ISAVKRQLR+R+IY+SKLL+YD R+L VF
Sbjct: 140 VRFHSSVGGKSAVSRCLETLTGALFQRPPVISAVKRQLRVRSIYDSKLLDYDEKRNLAVF 199
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W CEAGTY+RTMCVH+GL+LGVG HMQELRRVRSG L ENDNMVTMHD++DAQ++ DNY
Sbjct: 200 WAKCEAGTYIRTMCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTMHDILDAQYMLDNY 259
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE+YLRR+I PLE+LLT R+VVKD+ VNAICYGAKLMIPG+LRF+N I+VG EVV+M
Sbjct: 260 RDESYLRRIISPLELLLTDLPRIVVKDSCVNAICYGAKLMIPGVLRFDNGIDVGTEVVMM 319
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+G+A+MTTAV+A+ DHGVVA IKRV+M+RDTY +WG GPRAS KKKLI G
Sbjct: 320 TTKGEAIAIGVAQMTTAVIASVDHGVVAIIKRVIMERDTYDMRWGHGPRASEKKKLILGG 379
Query: 410 KLDKHGKLNEKTPQEWAR 427
KLDKHGK NE+TP+ W +
Sbjct: 380 KLDKHGKPNEQTPESWLK 397
>gi|219120454|ref|XP_002180965.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407681|gb|EEC47617.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 484
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 283/391 (72%), Positives = 334/391 (85%), Gaps = 4/391 (1%)
Query: 39 ADDNNA---TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
ADD +A T+ +I P S TP +DTS+WP+LLKNY L+VRT HYTPLP G SPL R
Sbjct: 13 ADDGSAVAETSAGPMITPSSHTPKLDTSKWPLLLKNYHELHVRTAHYTPLPTGSSPLART 72
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
L +++YG+INLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 73 LEQHLQYGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRL 132
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEA-LTGAVFQRPPLISAVKRQLRIRTIYE 214
VK+QQ AGKEY+ V RLH + D ++ RA+E LTGA+FQRPPLISAVKRQLRIRTIY+
Sbjct: 133 VKAQQSAGKEYIGVVRLHAALDDPKQLTRAIETTLTGALFQRPPLISAVKRQLRIRTIYD 192
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
SKLLE+D +R+L VFW+ CEAGTY+RT+CVH GL++G GGHMQELRRV+SG+LGE DN+V
Sbjct: 193 SKLLEFDGERNLGVFWVKCEAGTYIRTLCVHAGLLVGTGGHMQELRRVKSGVLGEEDNLV 252
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
T+HDVMDAQ +YD +DE YLRRV+MPLE LLT+YKR+VVKD+ VNAICYGAKLMIPGLL
Sbjct: 253 TLHDVMDAQHVYDTTKDETYLRRVVMPLETLLTNYKRIVVKDSAVNAICYGAKLMIPGLL 312
Query: 335 RFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWG 394
RF +DIE+ +EVVLMTTKGEA+A+ +A+MTTAVMAT DHGVVA+IKRV+M+RD YPR+WG
Sbjct: 313 RFADDIELNQEVVLMTTKGEAIAVALAQMTTAVMATVDHGVVAKIKRVIMERDVYPRRWG 372
Query: 395 LGPRASMKKKLIAEGKLDKHGKLNEKTPQEW 425
LGP A KK +I EGKLDKHGK NEKTP +
Sbjct: 373 LGPMAQRKKSMIKEGKLDKHGKPNEKTPSNF 403
>gi|67595141|ref|XP_665978.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656867|gb|EAL35749.1| hypothetical protein Chro.30435 [Cryptosporidium hominis]
Length = 518
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 279/378 (73%), Positives = 327/378 (86%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKP+S + IDTS WP+LLKNY +LNVRTGHYTPLP G SPL R L DY+ YGIINLDK
Sbjct: 18 VIKPESKSQPIDTSNWPLLLKNYSKLNVRTGHYTPLPYGNSPLNRNLTDYLSYGIINLDK 77
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
PANPSSHEVVAWIK+ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ AGKEYVC+
Sbjct: 78 PANPSSHEVVAWIKKILRCEKTGHSGTLDPKVTGCLLVCLNRATRLVKSQQSAGKEYVCI 137
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
R H V + V+R LE LTGA+FQRPP+ISAVKRQLR+R+IY+SKLL+YD R+L VF
Sbjct: 138 VRFHSSVGGKSAVSRCLETLTGALFQRPPVISAVKRQLRVRSIYDSKLLDYDEKRNLAVF 197
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W CEAGTY+RTMCVH+GL+LGVG HMQELRRVRSG L ENDNMVTMHD++DAQ++ DNY
Sbjct: 198 WAKCEAGTYIRTMCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTMHDILDAQYMLDNY 257
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE+YLRR+I PLE+LLT R+VVKD+ VNAICYGAKLMIPG+LRF+N I+VG EVV+M
Sbjct: 258 RDESYLRRIISPLELLLTDLPRIVVKDSCVNAICYGAKLMIPGVLRFDNGIDVGTEVVMM 317
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+G+A+MTTAV+A+ DHGVVA IKRV+M+RDTY +WG GPRAS KKKLI G
Sbjct: 318 TTKGEAIAIGVAQMTTAVIASVDHGVVAIIKRVIMERDTYDMRWGHGPRASEKKKLILGG 377
Query: 410 KLDKHGKLNEKTPQEWAR 427
KLDKHGK NE+TP+ W +
Sbjct: 378 KLDKHGKPNEQTPESWLK 395
>gi|50426879|ref|XP_462038.1| DEHA2G11748p [Debaryomyces hansenii CBS767]
gi|49657708|emb|CAG90524.1| DEHA2G11748p [Debaryomyces hansenii CBS767]
Length = 472
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 277/383 (72%), Positives = 334/383 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ ++IIKP+S PS DTS+WP+LLKNYD+L VR+GHYTP+P+G SPLKR L YI GII
Sbjct: 2 SDEYIIKPESVAPSKDTSEWPLLLKNYDKLLVRSGHYTPIPSGCSPLKRDLKSYISSGII 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD++ D ++ R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R
Sbjct: 122 YVCIVRLHDELKDAKEMGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRG 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDV+DAQ++
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTLHDVLDAQYV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNSVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+MTT + CDHGVVA++KR +M+RDTYPR+WGLGP A KK+L
Sbjct: 302 VVLMTTKGEAIAIGIAQMTTVDLQGCDHGVVAKVKRCIMERDTYPRRWGLGPVAQKKKQL 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARN 428
A+GKLDK+G+ NE TP+ W ++
Sbjct: 362 KADGKLDKYGRANENTPETWKKD 384
>gi|349579890|dbj|GAA25051.1| K7_Cbf5p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 486
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>gi|256274339|gb|EEU09244.1| Cbf5p [Saccharomyces cerevisiae JAY291]
gi|259148167|emb|CAY81414.1| Cbf5p [Saccharomyces cerevisiae EC1118]
gi|323303844|gb|EGA57626.1| Cbf5p [Saccharomyces cerevisiae FostersB]
gi|323336447|gb|EGA77714.1| Cbf5p [Saccharomyces cerevisiae Vin13]
gi|323353763|gb|EGA85618.1| Cbf5p [Saccharomyces cerevisiae VL3]
gi|365764025|gb|EHN05550.1| Cbf5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392297685|gb|EIW08784.1| Cbf5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 486
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>gi|190405245|gb|EDV08512.1| major low affinity 55 kDa centromere/microtubule binding protein
[Saccharomyces cerevisiae RM11-1a]
Length = 477
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>gi|151941019|gb|EDN59399.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789]
Length = 483
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>gi|6323204|ref|NP_013276.1| pseudouridine synthase CBF5 [Saccharomyces cerevisiae S288c]
gi|461698|sp|P33322.1|CBF5_YEAST RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Centromere-binding factor 5; AltName:
Full=Centromere/microtubule-binding protein CBF5;
AltName: Full=H/ACA snoRNP protein CBF5; AltName:
Full=Small nucleolar RNP protein CBF5; AltName:
Full=p64'
gi|311097|gb|AAA34473.1| centromere/microtubule binding protein [Saccharomyces cerevisiae]
gi|577203|gb|AAB67463.1| Cbf5p: centromere/microtubule binding protein [Saccharomyces
cerevisiae]
gi|285813599|tpg|DAA09495.1| TPA: pseudouridine synthase CBF5 [Saccharomyces cerevisiae S288c]
Length = 483
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>gi|323510129|dbj|BAJ77958.1| cgd3_3850 [Cryptosporidium parvum]
Length = 518
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 279/378 (73%), Positives = 327/378 (86%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKP+S + IDTS WP+LLKNY +LNVRTGHYTPLP G SPL R L DY+ YGIINLDK
Sbjct: 18 VIKPESKSQPIDTSNWPLLLKNYSKLNVRTGHYTPLPYGNSPLNRNLADYLSYGIINLDK 77
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
PANPSSHEVVAWIK+ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ AGKEYVC+
Sbjct: 78 PANPSSHEVVAWIKKILRCEKTGHSGTLDPKVTGCLLVCLNRATRLVKSQQSAGKEYVCI 137
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
R H V + V+R LE LTGA+FQRPP+ISAVKRQLR+R+IY+SKLL+YD R+L VF
Sbjct: 138 VRFHSSVGGKSAVSRCLETLTGALFQRPPVISAVKRQLRVRSIYDSKLLDYDEKRNLAVF 197
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W CEAGTY+RTMCVH+GL+LGVG HMQELRRVRSG L ENDNMVTMHD++DAQ++ DNY
Sbjct: 198 WAKCEAGTYIRTMCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTMHDILDAQYMLDNY 257
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE+YLRR+I PLE+LLT R+VVKD+ VNAICYGAKLMIPG+LRF+N I+VG EVV+M
Sbjct: 258 RDESYLRRIISPLELLLTDLPRIVVKDSCVNAICYGAKLMIPGVLRFDNGIDVGTEVVMM 317
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+G+A+MTTAV+A+ DHGVVA IKRV+M+RDTY +WG GPRAS KKKLI G
Sbjct: 318 TTKGEAIAIGVAQMTTAVIASVDHGVVAIIKRVIMERDTYDMRWGHGPRASEKKKLILGG 377
Query: 410 KLDKHGKLNEKTPQEWAR 427
KLDKHGK NE+TP+ W +
Sbjct: 378 KLDKHGKPNEQTPESWLK 395
>gi|348545585|ref|XP_003460260.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Oreochromis
niloticus]
Length = 500
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 273/380 (71%), Positives = 332/380 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ DF I+P+S S+DTSQWP+LLKN+D+LN+RT HYTPLP+G +PLKR + DY+R G I
Sbjct: 28 SGDFFIRPESKVASLDTSQWPLLLKNFDKLNIRTAHYTPLPSGSNPLKRNIHDYVRSGFI 87
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKE
Sbjct: 88 NLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKE 147
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +AR LE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R
Sbjct: 148 YVGIVRLHNAIESEHVLARGLETLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERR 207
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++GE DN+VTMHDV+DAQW
Sbjct: 208 LGIFWVSCEAGTYIRTLCVHLGLMLGVGGQMQELRRVRSGVMGEKDNLVTMHDVLDAQWQ 267
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
+D+ +DE+YLRRVI PLE LL S+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV ++
Sbjct: 268 FDHNKDESYLRRVIFPLEKLLVSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQD 327
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 328 IVVITTKGEAICTAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMM 387
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
I +G LDKHGK N TP +W
Sbjct: 388 IQKGLLDKHGKPNGSTPADW 407
>gi|353242876|emb|CCA74481.1| probable CBF5-Centromere Binding Factor / putative rRNA
pseuduridine synthase [Piriformospora indica DSM 11827]
Length = 532
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 277/387 (71%), Positives = 334/387 (86%), Gaps = 1/387 (0%)
Query: 45 TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
TA ++ IKP + P++DTSQWP+LLKNYD+L VRT H+TP+P G SPL+R + Y+R G+
Sbjct: 14 TAGEYAIKPSNAQPTLDTSQWPLLLKNYDKLLVRTSHFTPIPVGCSPLRRDIQSYVRSGV 73
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKP+NPSSHEVVAW++RIL+V KTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGK
Sbjct: 74 INLDKPSNPSSHEVVAWMRRILKVNKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGK 133
Query: 165 EYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
EYVCV RLH + D + RALE LTGA+FQRPPLISAVKRQLR+RTIY SKLLEYD DR
Sbjct: 134 EYVCVIRLHSGLSDPTALGRALETLTGALFQRPPLISAVKRQLRVRTIYSSKLLEYDNDR 193
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
HL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG L END++VTMHDV+DAQ+
Sbjct: 194 HLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGALSENDDIVTMHDVLDAQY 253
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
L+++ DE+YLRRVI PLE LLT YKR+VVKD++VNAICYGAK MIPGLLR+E+ IEVG+
Sbjct: 254 LFEHSGDESYLRRVIRPLESLLTGYKRIVVKDSSVNAICYGAKFMIPGLLRYESGIEVGD 313
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
EVVLMTTKGEA+AL IA+M +A +AT DHGVVA+IKR +M+RDTYPRKWGLGP+A KK
Sbjct: 314 EVVLMTTKGEAIALAIAQMASADLATADHGVVAKIKRCIMERDTYPRKWGLGPQAMKKKM 373
Query: 405 LIAEGKLDKHGKLNEK-TPQEWARNVV 430
++ G+LDK+G+ E TPQ+W ++ +
Sbjct: 374 MVKGGELDKYGRAIEGVTPQKWTKDYI 400
>gi|320587203|gb|EFW99683.1| centromere microtubule-binding protein cbf5 [Grosmannia clavigera
kw1407]
Length = 474
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 277/384 (72%), Positives = 333/384 (86%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
++ IKPQ+ P++DTS WP+LLKN+D L +RTGH+TP+P+G SPL+R L Y+ G+INL
Sbjct: 9 EYTIKPQATAPAVDTSNWPLLLKNFDNLLIRTGHFTPIPHGSSPLRRDLKSYVSSGVINL 68
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV
Sbjct: 69 DKPSNPSSHEVVAWVKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYV 128
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
C+ARLH +VP +VA+ALE LTGA+FQRPPLISAVKRQLRIR+IYESK++E+D DR L
Sbjct: 129 CIARLHGRVPGGEPQVAQALETLTGALFQRPPLISAVKRQLRIRSIYESKVIEFDNDRGL 188
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DAQWLY
Sbjct: 189 FVFWASCEAGTYMRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTLHDVLDAQWLY 248
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR++I PLE LLT YKRLVVKD+ VNA+CYGAKLM+PGLLR+E IE EEV
Sbjct: 249 DNTRDESYLRKIIQPLESLLTGYKRLVVKDSAVNAVCYGAKLMLPGLLRYETGIEHHEEV 308
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A+ KKKL
Sbjct: 309 VLMTTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAAEKKKLK 368
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK G+ N+ TP +WA V
Sbjct: 369 ADGKLDKFGRPNDATPAKWADGYV 392
>gi|156048188|ref|XP_001590061.1| hypothetical protein SS1G_08825 [Sclerotinia sclerotiorum 1980]
gi|154693222|gb|EDN92960.1| hypothetical protein SS1G_08825 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 483
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 298/435 (68%), Positives = 354/435 (81%), Gaps = 5/435 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ TP+IDTS WP+LLKNY+ L VRTGH+TP+PNG +PLKR L YI G+INL
Sbjct: 13 DYTIKPEALTPAIDTSSWPLLLKNYNNLLVRTGHFTPIPNGCTPLKRDLKSYISSGVINL 72
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 73 DKPSNPSSHEVVAWVKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 132
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 133 CVIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 192
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E +MVT+HDV+DAQW+
Sbjct: 193 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDMVTLHDVLDAQWMQ 252
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDEAYLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DIEV EEV
Sbjct: 253 DNARDEAYLRKVIQPLETLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADIEVHEEV 312
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T +++CDHGVVA++KR +M+RD YPR+WG+GP A KKK+
Sbjct: 313 VLMTTKGEAIALGIAQMSTVELSSCDHGVVAKVKRCIMERDLYPRRWGMGPVAIEKKKMK 372
Query: 407 AEGKLDKHGKLNEKTPQEW---ARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
EGKLDK+G+ NE TP +W ++ PP D VA + + V + V
Sbjct: 373 TEGKLDKYGRPNEATPAKWNNDYKDFNAPP-EDGAVAIASHPKPEVVTAAAPSAVSPVDG 431
Query: 464 DASGDSPALNAKKAK 478
+A+ D N KK K
Sbjct: 432 NATNDDEEKNDKKRK 446
>gi|361131882|pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
gi|361132369|pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>gi|323308015|gb|EGA61269.1| Cbf5p [Saccharomyces cerevisiae FostersO]
Length = 489
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 274/384 (71%), Positives = 330/384 (85%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ I +M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAITQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>gi|401624599|gb|EJS42654.1| cbf5p [Saccharomyces arboricola H-6]
Length = 482
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 274/384 (71%), Positives = 330/384 (85%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP +W + V
Sbjct: 364 ADGKLDKYGRVNENTPDQWKKEYV 387
>gi|281212633|gb|EFA86793.1| pseudouridine synthase family protein [Polysphondylium pallidum
PN500]
Length = 572
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 276/392 (70%), Positives = 337/392 (85%), Gaps = 1/392 (0%)
Query: 43 NATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRY 102
N K++ IKP+ TP++DTS+WP+LLKNYD+L VRTGHYTP+P+G SPLKRP+ DY+RY
Sbjct: 15 NTEEKEYSIKPEK-TPALDTSKWPLLLKNYDQLLVRTGHYTPIPSGNSPLKRPIKDYVRY 73
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINLDKP+NPSSHEVV+W+K IL+VEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQGA
Sbjct: 74 GIINLDKPSNPSSHEVVSWVKNILKVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGA 133
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
GKEY+ + RLH + D +A+A+ LTGA+FQRPP SAVK++LR+RTI++SKLLEYD
Sbjct: 134 GKEYMGIVRLHSAIDDTNDLAKAVGTLTGALFQRPPEKSAVKKRLRVRTIHQSKLLEYDA 193
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
+R+L + W+ CEAGTY+RT+CVH+GL+LGVGGHMQELRRVRSGI+ E NMVTMHD+ DA
Sbjct: 194 ERNLGLIWVDCEAGTYIRTLCVHIGLLLGVGGHMQELRRVRSGIMSEKSNMVTMHDIKDA 253
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
Q+ YDN +DE YLRRVI PLE +LT+YKR+VVKD+ +NAICYGAKLMIPGLLR+E DIEV
Sbjct: 254 QYEYDNNKDETYLRRVIQPLEAVLTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIEV 313
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
EEVVL+TTKGEA+A+GIA+MTTA +++CDHGVVA IKRV+MDRD YP KWGLGP+A +K
Sbjct: 314 NEEVVLITTKGEAIAIGIAQMTTASLSSCDHGVVATIKRVIMDRDVYPVKWGLGPKAKVK 373
Query: 403 KKLIAEGKLDKHGKLNEKTPQEWARNVVLPPG 434
K++I +GKLDK GK NE TP +W N V G
Sbjct: 374 KEMIRDGKLDKFGKPNENTPSDWQSNYVYYSG 405
>gi|334350049|ref|XP_001374865.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Monodelphis domestica]
Length = 575
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/440 (65%), Positives = 350/440 (79%), Gaps = 17/440 (3%)
Query: 25 NDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTP 84
+ A A +F IKP+S +DTSQWP+LLKN+D+LNVRT HYTP
Sbjct: 24 DAAVAELQHEG------------EFFIKPESKVVQLDTSQWPLLLKNFDKLNVRTTHYTP 71
Query: 85 LPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGN 144
LP+G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG
Sbjct: 72 LPSGSNPLKREITDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGC 131
Query: 145 LIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
LIVCI+RATRLVKSQQ AGKEYV V RLH+ + +++RALE LTGA+FQRPPLI+AVK
Sbjct: 132 LIVCIERATRLVKSQQSAGKEYVGVIRLHNAIESEVQLSRALETLTGALFQRPPLIAAVK 191
Query: 205 RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRS 264
RQLR+RTIYESK+LEYD ++ L +FW+SCEAGTY+RT+CVH+GL+LGVGG MQELRR+RS
Sbjct: 192 RQLRVRTIYESKMLEYDPEKRLGIFWVSCEAGTYIRTLCVHVGLLLGVGGQMQELRRIRS 251
Query: 265 GILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
G++GE D+MVTMHDV+DAQW YDNY+DE YLRRVI PLE LLTS+KRLV+KD+ VNAICY
Sbjct: 252 GVMGEKDHMVTMHDVLDAQWQYDNYKDEGYLRRVIYPLEKLLTSHKRLVMKDSAVNAICY 311
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
GAK+M+PG+LR+E+ IEV +EVV++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M
Sbjct: 312 GAKIMLPGVLRYEDGIEVNQEVVVITTKGEAICVAIALMTTAVISTCDHGIVAKIKRVIM 371
Query: 385 DRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAA 444
+RDTYPRKWGLGP+AS KK +I +G LDKHGK N+ TP W + + D V
Sbjct: 372 ERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPNDSTPTAWKDDYI-----DYSVTVKTE 426
Query: 445 AAEQTVAEKETAGVKKRKLD 464
V +T +KRKL+
Sbjct: 427 PVSVPVVPMKTEKTRKRKLE 446
>gi|190347847|gb|EDK40196.2| centromere/microtubule-binding protein CBF5 [Meyerozyma
guilliermondii ATCC 6260]
Length = 501
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 272/382 (71%), Positives = 332/382 (86%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
A + +++IKP+S PS DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L Y+ G
Sbjct: 23 AMSDEYMIKPESIAPSNDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYVSSG 82
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAG
Sbjct: 83 VINLDKPSNPSSHEVVAWIKRILRTEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 142
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVC+ RLHD++ D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D
Sbjct: 143 KEYVCIVRLHDELKDAKDMGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNK 202
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
R L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDV+DAQ
Sbjct: 203 RGLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALAENDNLVTLHDVLDAQ 262
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
++YDN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+
Sbjct: 263 YVYDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNSVCYGAKLMIPGLLRYEEGIELY 322
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+EVVL+TTKGEA+A+GIA+MTT + +CDHG+VA++KR +M+RDTYPR+WGLGP A KK
Sbjct: 323 DEVVLITTKGEAIAIGIAQMTTVDLQSCDHGIVAKVKRCIMERDTYPRRWGLGPVAQKKK 382
Query: 404 KLIAEGKLDKHGKLNEKTPQEW 425
+L A+GKLDK+G+ NE TP+ W
Sbjct: 383 QLKADGKLDKYGRTNENTPESW 404
>gi|260941752|ref|XP_002615042.1| centromere/microtubule binding protein CBF5 [Clavispora lusitaniae
ATCC 42720]
gi|238851465|gb|EEQ40929.1| centromere/microtubule binding protein CBF5 [Clavispora lusitaniae
ATCC 42720]
Length = 475
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 273/378 (72%), Positives = 333/378 (88%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+++IKP+S PS DTS+WP+LLKNYD+L VR+GHYTP+P G SPLKR L YI G+INL
Sbjct: 3 EYMIKPESVAPSKDTSEWPLLLKNYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINL 62
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV
Sbjct: 63 DKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYV 122
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLH+++ D ++ RALE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R L
Sbjct: 123 CIVRLHEELEDAKEMGRALENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRGLG 182
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG +GENDNMVT+HDV+DAQ++YD
Sbjct: 183 VFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMGENDNMVTLHDVLDAQYVYD 242
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E+ IE+ +EVV
Sbjct: 243 NTRDESYLRKIIQPLETLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEDGIELYDEVV 302
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+GIA+MTT + +CDHGVVA++KR +M+RDTYPR+WGLGP A KK++ A
Sbjct: 303 LITTKGEAIAIGIAQMTTVDLQSCDHGVVAKVKRCIMERDTYPRRWGLGPVAQKKKQMKA 362
Query: 408 EGKLDKHGKLNEKTPQEW 425
+GKLD+ G+ NE TP+ W
Sbjct: 363 DGKLDRFGRTNENTPESW 380
>gi|401410600|ref|XP_003884748.1| putative centromere/microtubule binding protein [Neospora caninum
Liverpool]
gi|325119166|emb|CBZ54718.1| putative centromere/microtubule binding protein [Neospora caninum
Liverpool]
Length = 503
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/407 (69%), Positives = 335/407 (82%), Gaps = 4/407 (0%)
Query: 22 DAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGH 81
+A +D L + A+ D+ I+P S +P IDTS+WP+LLKNYDRLNVRTGH
Sbjct: 3 EATSDPGVLASAAAEGGK---KKKKSDYAIEPSS-SPPIDTSKWPLLLKNYDRLNVRTGH 58
Query: 82 YTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKV 141
YTPLP+G SPL RPL YI YG +NLDKPANPSSHEVVAW+K+ILRVEKTGHSGTLDPKV
Sbjct: 59 YTPLPHGCSPLCRPLQQYINYGAMNLDKPANPSSHEVVAWLKKILRVEKTGHSGTLDPKV 118
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG L+VCI+RATRLVKSQQ AGKEYVC+ R H K AKVARALE LTGA+FQRPP+++
Sbjct: 119 TGCLLVCINRATRLVKSQQSAGKEYVCIIRFHAKPESRAKVARALETLTGALFQRPPVVA 178
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLRIRTIYES+LL++D RH+ VFW+ CEAGTY+RT+CVHLGL+LG G HMQELRR
Sbjct: 179 AVKRQLRIRTIYESRLLDFDDQRHMAVFWVKCEAGTYIRTLCVHLGLVLGCGAHMQELRR 238
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSG LGEND++VTMHDV+DA +YD+ RDE YLRR I PLE+LLT + R+VVKD+ VNA
Sbjct: 239 VRSGNLGENDHLVTMHDVLDAMHVYDSTRDETYLRRTIFPLELLLTGFPRIVVKDSCVNA 298
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
ICYGAKLMIPG+LRFE+ IEV +EVVLMTTKGEA+AL +A+MT++V+AT DHGVV IKR
Sbjct: 299 ICYGAKLMIPGVLRFESGIEVNQEVVLMTTKGEAIALAVAQMTSSVIATVDHGVVVTIKR 358
Query: 382 VVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
V+MDRDTY +WG GPRAS KKK+I G LDK GK NEKTP W ++
Sbjct: 359 VLMDRDTYDMRWGYGPRASEKKKMILAGLLDKKGKPNEKTPATWLKS 405
>gi|146415190|ref|XP_001483565.1| centromere/microtubule-binding protein CBF5 [Meyerozyma
guilliermondii ATCC 6260]
Length = 501
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 272/382 (71%), Positives = 332/382 (86%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
A + +++IKP+S PS DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L Y+ G
Sbjct: 23 AMSDEYMIKPESIAPSNDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYVSSG 82
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAG
Sbjct: 83 VINLDKPSNPSSHEVVAWIKRILRTEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 142
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVC+ RLHD++ D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D
Sbjct: 143 KEYVCIVRLHDELKDAKDMGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNK 202
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
R L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDV+DAQ
Sbjct: 203 RGLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALAENDNLVTLHDVLDAQ 262
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
++YDN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+
Sbjct: 263 YVYDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNSVCYGAKLMIPGLLRYEEGIELY 322
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+EVVL+TTKGEA+A+GIA+MTT + +CDHG+VA++KR +M+RDTYPR+WGLGP A KK
Sbjct: 323 DEVVLITTKGEAIAIGIAQMTTVDLQSCDHGIVAKVKRCIMERDTYPRRWGLGPVAQKKK 382
Query: 404 KLIAEGKLDKHGKLNEKTPQEW 425
+L A+GKLDK+G+ NE TP+ W
Sbjct: 383 QLKADGKLDKYGRTNENTPESW 404
>gi|154302967|ref|XP_001551892.1| centromere/microtubule binding protein CBF5 [Botryotinia fuckeliana
B05.10]
gi|347832299|emb|CCD47996.1| similar to centromere/microtubule-binding protein cbf5 [Botryotinia
fuckeliana]
Length = 481
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/379 (74%), Positives = 334/379 (88%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ TP++DTS WP+LLKNY+ L VRTGH+TP+PNG +PLKR L YI G+INL
Sbjct: 13 DYTIKPEALTPAVDTSSWPLLLKNYNNLLVRTGHFTPIPNGCTPLKRDLKSYISSGVINL 72
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 73 DKPSNPSSHEVVAWVKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 132
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 133 CVIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 192
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E +MVT+HDV+DAQW+
Sbjct: 193 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDMVTLHDVLDAQWMQ 252
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDEAYLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DIEV EEV
Sbjct: 253 DNARDEAYLRKVIQPLETLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADIEVHEEV 312
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T +++CDHGVVA++KR +M+RD YPR+WG+GP A KKK+
Sbjct: 313 VLMTTKGEAIALGIAQMSTVELSSCDHGVVAKVKRCIMERDLYPRRWGMGPVAIEKKKMK 372
Query: 407 AEGKLDKHGKLNEKTPQEW 425
EGKLDK+G+ NE TP +W
Sbjct: 373 TEGKLDKYGRPNEATPAKW 391
>gi|3334140|sp|O43100.1|CBF5_EMENI RecName: Full=Centromere/microtubule-binding protein CBF5; AltName:
Full=Centromere-binding factor 5; AltName: Full=H/ACA
snoRNP protein CBF5; AltName: Full=Small nucleolar RNP
protein CBF5; AltName: Full=rRNA pseudouridine synthase
gi|2737888|gb|AAB94296.1| nucleolar protein AnCbf5p [Emericella nidulans]
gi|19743614|gb|AAL23694.1| rRNA pseudouridine synthase [Emericella nidulans]
gi|259482934|tpe|CBF77883.1| TPA: Centromere/microtubule-binding protein CBF5
(Centromere-binding factor 5)(Small nucleolar RNP
protein CBF5)(H/ACA snoRNP protein CBF5)(rRNA
pseudouridine synthase)
[Source:UniProtKB/Swiss-Prot;Acc:O43100] [Aspergillus
nidulans FGSC A4]
Length = 481
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 290/410 (70%), Positives = 343/410 (83%), Gaps = 3/410 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ +I+T WP+LLKNYD+L VRTGH+TP+P G SPLKR L YI G+INL
Sbjct: 6 DYTIKPEATASNINTEDWPLLLKNYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINL 65
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 66 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 125
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 126 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 185
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN+ MVT+HDV+DAQWLY
Sbjct: 186 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMVTLHDVLDAQWLY 245
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+GEEV
Sbjct: 246 DNQRDESYLRKVIKPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIELGEEV 305
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 306 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 365
Query: 407 AEGKLDKHGKLNEKTPQEWARNV--VLPPGGDSVVASLAAAAEQTVAEKE 454
+ GKLDK+G+ NE TP +W P GDS ++ A++ + KE
Sbjct: 366 SSGKLDKYGRANEATPAKWKSEYKDYSAPDGDSSQQAVDVVAKEEASPKE 415
>gi|9931991|emb|CAC04528.1| DYSKERIN [Mus musculus]
Length = 509
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/447 (63%), Positives = 357/447 (79%), Gaps = 15/447 (3%)
Query: 24 KNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYT 83
+ D D A+ A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYT
Sbjct: 23 QED------DVAEIQH------AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYT 70
Query: 84 PLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG 143
PLP G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG
Sbjct: 71 PLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTG 130
Query: 144 NLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
LIVCI+RATRLVKSQQ AGKEYV + RLH+ + +++RALE LTGA+FQRPPLI+AV
Sbjct: 131 CLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAV 190
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 263
KRQLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVHL +LG G MQELRRVR
Sbjct: 191 KRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLCFVLGSGCQMQELRRVR 250
Query: 264 SGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAIC 323
SG++ E D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAIC
Sbjct: 251 SGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAIC 310
Query: 324 YGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
YGAK+M+PGLLR+E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+
Sbjct: 311 YGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVI 370
Query: 384 MDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASL 442
M+RDTYPRKWGLGP+AS KK +I +G LDKHGK + TP W ++ + G + + +
Sbjct: 371 MERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTE 430
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDS 469
A A Q A E V KRK D+ +S
Sbjct: 431 AVQAPQLAA--EAVNVIKRKRDSESES 455
>gi|241949831|ref|XP_002417638.1| H/ACA ribonucleoprotein complex subunit, putative;
centromere/microtubule-binding protein, putative; small
nucleolar rnp protein, putative [Candida dubliniensis
CD36]
gi|223640976|emb|CAX45321.1| H/ACA ribonucleoprotein complex subunit, putative [Candida
dubliniensis CD36]
Length = 476
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 270/385 (70%), Positives = 338/385 (87%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
++ +D+IIKP+S +PS DTSQWP+LLKNYD+L VR+GHYTP+P G +PL R + Y+ G
Sbjct: 2 SSKEDYIIKPESVSPSNDTSQWPLLLKNYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSG 61
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAG
Sbjct: 62 VINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 121
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVC+ RLHD++ D ++ R LE LTGA+FQRPPLISAVKRQLR+RT+Y+SKL+E+D
Sbjct: 122 KEYVCIVRLHDQLKDDKELNRTLENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNK 181
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
R L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + E+DN+VT+HDV+DAQ
Sbjct: 182 RGLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHDVLDAQ 241
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
++YDN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+
Sbjct: 242 YVYDNTRDESYLRKIIQPLESLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEEGIELY 301
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+EVVLMTTKGEA+A+GIA+M+T + +CDHG+VA++KR +M+RDTYPR+WGLGP A KK
Sbjct: 302 DEVVLMTTKGEAIAIGIAQMSTVDLQSCDHGIVAKVKRCIMERDTYPRRWGLGPIAQKKK 361
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARN 428
++ A+GKLDK+G++NE TP+ W ++
Sbjct: 362 QMKADGKLDKYGRVNENTPENWKKD 386
>gi|301619755|ref|XP_002939254.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Xenopus
(Silurana) tropicalis]
Length = 555
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 313/555 (56%), Positives = 394/555 (70%), Gaps = 48/555 (8%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S +DTSQWP+LLKN+D+LN+RT HYTP+P+G +PLKR + +YI+ G INL
Sbjct: 32 DFLIKPESKVAQLDTSQWPLLLKNFDKLNIRTAHYTPIPSGSNPLKREISEYIKTGFINL 91
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWI+RILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 92 DKPANPSSHEVVAWIRRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYV 151
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L
Sbjct: 152 GIVRLHNALENELQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRLG 211
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVH+GL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW +D
Sbjct: 212 IFWVSCEAGTYIRTLCVHIGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFD 271
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE+YLRRVI PLE LL S+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IE+ +E+V
Sbjct: 272 NNKDESYLRRVIFPLEKLLVSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIELNQEIV 331
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ + +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 332 VITTKGEAICIAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQ 391
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
+G LDKHGK NE TP W + V T ++ A KRK +
Sbjct: 392 KGLLDKHGKPNESTPSGWKQEYV--------------DYSATPKIQQAADAPKRKHVSET 437
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTE 527
DS + K ++ +++ V D A ++ KK+KKK K D EN A
Sbjct: 438 DSDSAEPSTLKKKKKKLESEDKEEHVDNADSDAATPVKSSKKKKKKDKGGDTENETA--- 494
Query: 528 VVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKK 587
SEK K+ E G D GE V K +KKK
Sbjct: 495 ------------------------AHSEKSKEM-------ETAGSDEGETVLKTKKKKKK 523
Query: 588 KKKKKKKDAEEEEEE 602
K ++++ EE E+
Sbjct: 524 DKTEERESPAEETEQ 538
>gi|237842913|ref|XP_002370754.1| centromere/microtubule binding protein, putative [Toxoplasma gondii
ME49]
gi|211968418|gb|EEB03614.1| centromere/microtubule binding protein, putative [Toxoplasma gondii
ME49]
gi|221482069|gb|EEE20430.1| centromere/microtubule binding protein, putative [Toxoplasma gondii
GT1]
gi|221502546|gb|EEE28273.1| centromere/microtubule binding protein, putative [Toxoplasma gondii
VEG]
Length = 505
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/412 (69%), Positives = 336/412 (81%), Gaps = 6/412 (1%)
Query: 17 KSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLN 76
K A++D A+A T DN A I+P S +P IDTS+WP+LLK+YDRLN
Sbjct: 2 KEATSDPGLVASAGTEGGKKKKKTDNYA------IEPNSSSPPIDTSKWPLLLKHYDRLN 55
Query: 77 VRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGT 136
VRTGHYTPLP+G SPL RPL YI YG +NLDKPANPSSHEVVAW+K+ILRVEKTGHSGT
Sbjct: 56 VRTGHYTPLPHGCSPLCRPLQQYINYGAMNLDKPANPSSHEVVAWLKKILRVEKTGHSGT 115
Query: 137 LDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQR 196
LDPKVTG L+VCI+RATRLVKSQQ AGKEYVC+ R H K AKVARALE LTGA+FQR
Sbjct: 116 LDPKVTGCLLVCINRATRLVKSQQSAGKEYVCIIRFHAKPESKAKVARALETLTGALFQR 175
Query: 197 PPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHM 256
PP+++AVKRQLRIRTIY S+LL+YD RH+ VFW CEAGTY+RT+CVHLGL+LG G HM
Sbjct: 176 PPVVAAVKRQLRIRTIYASRLLDYDEQRHMAVFWAKCEAGTYIRTLCVHLGLVLGCGAHM 235
Query: 257 QELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
QELRRVRSG LGE D++VTMHDV+DA +YD+ RDE YLRR I PLE+LLT + R+VVKD
Sbjct: 236 QELRRVRSGNLGERDHLVTMHDVLDAMHVYDSTRDETYLRRTIFPLELLLTGFPRIVVKD 295
Query: 317 TTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVV 376
+ VNAICYGAKLMIPG+LRFE+ IEV +EVVLMTTKGEA+ALG+A+MT++V+AT DHGVV
Sbjct: 296 SCVNAICYGAKLMIPGVLRFESGIEVHQEVVLMTTKGEAIALGVAQMTSSVIATVDHGVV 355
Query: 377 ARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
+ +KRV+MDRDTY +WG GPRAS KKK+I G LDK GK NEKTP W ++
Sbjct: 356 STVKRVLMDRDTYDMRWGYGPRASEKKKMILAGLLDKKGKPNEKTPASWLKS 407
>gi|331243848|ref|XP_003334566.1| H/ACA ribonucleoprotein complex subunit 4 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309313556|gb|EFP90147.1| H/ACA ribonucleoprotein complex subunit 4 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 515
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/385 (74%), Positives = 333/385 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A DF IKP S TP +DTSQWP+LLKNYD+L +R+ H+TP+P G SPLKRPL +YI+ G+I
Sbjct: 17 ASDFSIKPASATPRLDTSQWPLLLKNYDKLLIRSSHFTPIPCGSSPLKRPLSEYIKTGVI 76
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILR EKTGHSGTLDPKVTG L+VCIDRATRLVKSQQGAGKE
Sbjct: 77 NLDKPSNPSSHEVVAWIRRILRSEKTGHSGTLDPKVTGCLLVCIDRATRLVKSQQGAGKE 136
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVCV RLH + ++R LE LTGA+FQRPPLISAVKRQLRIRTIYE+KL+E+D RH
Sbjct: 137 YVCVLRLHAGLETEKALSRGLETLTGALFQRPPLISAVKRQLRIRTIYETKLIEFDNKRH 196
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG +GEND +VTMHDV+DAQW
Sbjct: 197 LAIFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMGENDGIVTMHDVLDAQWT 256
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLRRVI PLE LL YKR+VVKDT VNA+CYGAKLMIPGLLR+E DI++ EE
Sbjct: 257 YDNTRDESYLRRVIRPLESLLIGYKRVVVKDTAVNAVCYGAKLMIPGLLRYEADIQLNEE 316
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+MTT +ATCDHGVVA++KR +M+RDTYPR+WGLGP+A KKK+
Sbjct: 317 VVLMTTKGEAIAIGIAQMTTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPKAQEKKKM 376
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
+ G LDK+G+ NEKTP W V
Sbjct: 377 VKTGSLDKYGRANEKTPANWKEGYV 401
>gi|226955362|gb|ACO95357.1| dyskeratosis congenita 1, dyskerin (predicted) [Dasypus
novemcinctus]
Length = 512
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/429 (67%), Positives = 359/429 (83%), Gaps = 3/429 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP+G +PLKR + DYIR G IN
Sbjct: 34 EEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPSGSNPLKREIADYIRTGFIN 93
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 154 VGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 213
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWLY
Sbjct: 214 GIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLY 273
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN++DE+YLRRVI PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+
Sbjct: 274 DNHKDESYLRRVIYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEI 333
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 334 VVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMI 393
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
+G LDKHGK + TP W + V V + A A Q VAE A +KR+ ++
Sbjct: 394 KQGLLDKHGKPTDSTPTAWMQEYVDYSDTSKREVVAEAVKAPQVVAEAAKAPKRKRESES 453
Query: 466 SGD--SPAL 472
GD SPA+
Sbjct: 454 EGDEISPAV 462
>gi|68490857|ref|XP_710755.1| likely snoRNP-associated pseudouridylate synthase [Candida albicans
SC5314]
gi|68490939|ref|XP_710717.1| likely snoRNP-associated pseudouridylate synthase [Candida albicans
SC5314]
gi|3334141|sp|O43101.1|CBF5_CANAL RecName: Full=Centromere/microtubule-binding protein CBF5; AltName:
Full=Centromere-binding factor 5; AltName: Full=H/ACA
snoRNP protein CBF5; AltName: Full=Small nucleolar RNP
protein CBF5
gi|2737890|gb|AAB94297.1| nucleolar protein CaCbf5p [Candida albicans]
gi|46431954|gb|EAK91469.1| likely snoRNP-associated pseudouridylate synthase [Candida albicans
SC5314]
gi|46431996|gb|EAK91507.1| likely snoRNP-associated pseudouridylate synthase [Candida albicans
SC5314]
gi|238878534|gb|EEQ42172.1| centromere/microtubule-binding protein CBF5 [Candida albicans WO-1]
Length = 479
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 270/385 (70%), Positives = 339/385 (88%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
++ +D+IIKP+S +PS DTSQWP+LLKNYD+L VR+GHYTP+P G +PL R + Y+ G
Sbjct: 2 SSKEDYIIKPESVSPSNDTSQWPLLLKNYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSG 61
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAG
Sbjct: 62 VINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 121
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVC+ RLH+++ D ++ RALE LTGA+FQRPPLISAVKRQLR+RT+Y+SKL+E+D
Sbjct: 122 KEYVCIVRLHEQLKDDKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNK 181
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
R L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + E+DN+VT+HDV+DAQ
Sbjct: 182 RGLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHDVLDAQ 241
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
++YDN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+
Sbjct: 242 YVYDNTRDESYLRKIIQPLESLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEEGIELY 301
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+EVVLMTTKGEA+A+GIA+M+T + +CDHG+VA++KR +M+RDTYPR+WGLGP A KK
Sbjct: 302 DEVVLMTTKGEAIAIGIAQMSTVDLQSCDHGIVAKVKRCIMERDTYPRRWGLGPIAQKKK 361
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARN 428
++ A+GKLDK+G++NE TP+ W ++
Sbjct: 362 QMKADGKLDKYGRVNENTPENWKKD 386
>gi|425766601|gb|EKV05205.1| Centromere/microtubule-binding protein CBF5 [Penicillium digitatum
PHI26]
gi|425781695|gb|EKV19642.1| Centromere/microtubule-binding protein CBF5 [Penicillium digitatum
Pd1]
Length = 762
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/397 (71%), Positives = 332/397 (83%), Gaps = 4/397 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ PS+DTS WP+LLKNY++L VRTGH+TP+P G SPL R L YI G+INL
Sbjct: 299 DYAIKPEASVPSVDTSDWPLLLKNYEKLLVRTGHFTPIPAGSSPLSRDLKSYISSGVINL 358
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 359 DKPSNPSSHEVVAWMKRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 418
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESK E+D +RHL
Sbjct: 419 CVIRLHDKIPGGEAQFVRALETLTGALFQRPPLISAVKRQLRIRTIHESKNYEFDNERHL 478
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG +GE MVT+HDVMDAQW+Y
Sbjct: 479 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMGEGPGMVTLHDVMDAQWVY 538
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLT YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE EEV
Sbjct: 539 DNNRDESYLRKVISPLESLLTGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEAGIECHEEV 598
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T + TCDHGVVA++KR +M+RD YPR+WGLGP A KKK+
Sbjct: 599 VLMTTKGEAIAIGIAQMSTVELTTCDHGVVAKVKRCIMERDLYPRRWGLGPTALEKKKMK 658
Query: 407 AEGKLDKHGKLNEKTPQEW---ARNVVLPPGGDSVVA 440
G LDK+G+ N+ TP +W ++ LP G S VA
Sbjct: 659 TAGTLDKYGRTNDATPAQWKNEYKDFNLPITGTSAVA 695
>gi|344229205|gb|EGV61091.1| putative rRNA pseudouridine synthase [Candida tenuis ATCC 10573]
gi|344229206|gb|EGV61092.1| hypothetical protein CANTEDRAFT_116369 [Candida tenuis ATCC 10573]
Length = 466
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 272/379 (71%), Positives = 330/379 (87%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ PS DTS WP+LLKNYD+L VR+GHYTP+P+G SPLKR + Y+ G+IN
Sbjct: 4 EDFVIKPENVEPSKDTSSWPLLLKNYDKLLVRSGHYTPIPSGCSPLKRDIKSYVSSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD++ D + R LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R L
Sbjct: 124 VCIVRLHDELKDQKDLGRTLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRGL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + ENDN+VT+HDV+DAQ++Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMDENDNLVTLHDVLDAQYVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +EV
Sbjct: 244 DNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIEIYDEV 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+MT+ + +CDHGVVA++KR +M+RDTYPR+WGLGP A KK++
Sbjct: 304 VLMTTKGEAIAIGIAQMTSVDLQSCDHGVVAKVKRCIMERDTYPRRWGLGPIAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ NE TP+ W
Sbjct: 364 ADGKLDKYGRSNENTPETW 382
>gi|367024169|ref|XP_003661369.1| hypothetical protein MYCTH_2090056 [Myceliophthora thermophila ATCC
42464]
gi|347008637|gb|AEO56124.1| hypothetical protein MYCTH_2090056 [Myceliophthora thermophila ATCC
42464]
Length = 490
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 282/392 (71%), Positives = 333/392 (84%), Gaps = 4/392 (1%)
Query: 39 ADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVD 98
A DN +++ IKPQS P+IDTS WP+LLKNYD++ VR+GH+TP+PNG SP KR +
Sbjct: 11 AGDNGE--EEYAIKPQSTVPTIDTSTWPLLLKNYDKMLVRSGHFTPIPNGSSPYKRDIKS 68
Query: 99 YIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 158
YI G+INLDKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVK+
Sbjct: 69 YISSGVINLDKPSNPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKA 128
Query: 159 QQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKL 217
QQGAGKEYVCV R HD VP A A+ALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL
Sbjct: 129 QQGAGKEYVCVIRFHDTVPGGEAAFAKALEILTGALFQRPPLISAVKRQLRIRTIHESKL 188
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEND-NMVTM 276
+E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG++ E+D MVT+
Sbjct: 189 IEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGVMSEDDGTMVTL 248
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF 336
HDV+DAQW YDN DE LR+VI PLE LL +YKRLVVKD+ VNA+CYGAKLM+PGLLR+
Sbjct: 249 HDVLDAQWQYDNGGDETLLRKVIQPLETLLCTYKRLVVKDSAVNAVCYGAKLMLPGLLRY 308
Query: 337 ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG 396
+ IE EEVVLMTTKGEA+A+GIA+M+T M TCDHGVVA++KR +M+RD YPR+WGLG
Sbjct: 309 DPGIEAHEEVVLMTTKGEAIAIGIAQMSTVEMTTCDHGVVAKVKRCIMERDLYPRRWGLG 368
Query: 397 PRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
P A KKKL A+GKLDK+G+ NE TP +W ++
Sbjct: 369 PVAMEKKKLKADGKLDKYGRPNEATPAKWTQS 400
>gi|157136797|ref|XP_001656912.1| centromere/microtubule binding protein cbf5 [Aedes aegypti]
gi|108880941|gb|EAT45166.1| AAEL003514-PA [Aedes aegypti]
Length = 527
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 302/461 (65%), Positives = 364/461 (78%), Gaps = 12/461 (2%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F I+P + +DTSQWP+LLKN+DRLNVRT HYTPLP G SPL R + DY+ G INL
Sbjct: 39 NFQIQPSAAIAKLDTSQWPLLLKNFDRLNVRTNHYTPLPFGSSPLNRKIKDYVTSGFINL 98
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIK+IL+V+KTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 99 DKPSNPSSHEVVAWIKKILKVDKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYV 158
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+YD R++
Sbjct: 159 AVFKLHSAVESVAKVNQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDDQRNMG 218
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAG+Y+RTMCVHLGL+ GVGG M ELRRVRSGI E D MVTMHDV+DAQ+LYD
Sbjct: 219 VFWVSCEAGSYIRTMCVHLGLVTGVGGQMLELRRVRSGIQSEKDGMVTMHDVLDAQYLYD 278
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE LRRVI PLE LL +KR+++KD++VNA+CYGAK+M+PG+LR+E+ IE+ +E+V
Sbjct: 279 NHKDETMLRRVIKPLEGLLVGHKRIIMKDSSVNAVCYGAKIMLPGVLRYEDGIEMDQEIV 338
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEAVAL IA MTTA MA+CDHGV A+IKRV+M+RDTYPRKWGLGP+ASMKK+LIA
Sbjct: 339 IVTTKGEAVALAIALMTTATMASCDHGVCAKIKRVIMERDTYPRKWGLGPKASMKKQLIA 398
Query: 408 EGKLDKHGKLNEKTPQEWARNVV-----LPPGGDSVVASLAAAAEQTVAEKETAGVKKRK 462
GKLDK+GK N+KTP+EW V PG D+ + AAAAE E E AG KRK
Sbjct: 399 SGKLDKYGKPNDKTPKEWLTGYVDFNKPAAPGKDT-NGNGAAAAE---GEDEFAG-GKRK 453
Query: 463 LDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE 503
L S A + + EV EK++ K K K+DEA E
Sbjct: 454 LSVG--SAADQSMETSAMEVDAGEKKKKKKKKHKKDDEAPE 492
>gi|451854343|gb|EMD67636.1| hypothetical protein COCSADRAFT_34430 [Cochliobolus sativus ND90Pr]
gi|451999418|gb|EMD91880.1| hypothetical protein COCHEDRAFT_1133778 [Cochliobolus
heterostrophus C5]
Length = 495
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 278/378 (73%), Positives = 326/378 (86%), Gaps = 1/378 (0%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKP++ P+IDTS WP+LLKNY L VRT HYTP+PNG +PL R L YI G+INLD
Sbjct: 11 YVIKPEAAAPAIDTSDWPLLLKNYSDLLVRTSHYTPIPNGCAPLSRDLKSYISSGVINLD 70
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 71 KPSNPSSHEVVSWIKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 130
Query: 169 VARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +R L
Sbjct: 131 VIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERQLG 190
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DAQWLYD
Sbjct: 191 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTLHDVLDAQWLYD 250
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDEAYLR+VI PLE LL SYKR+VVKD++VNAICYGAKLM+PGLLRFE IE+ EE+V
Sbjct: 251 NNRDEAYLRKVISPLESLLMSYKRVVVKDSSVNAICYGAKLMLPGLLRFEKGIEIHEEIV 310
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL A+M+ M+TCDHGVVA+IKRV+M+RD YPR+WG+GP A+ KKK+
Sbjct: 311 LMTTKGEAIALAYAQMSAVEMSTCDHGVVAKIKRVIMERDLYPRRWGMGPVATEKKKMKE 370
Query: 408 EGKLDKHGKLNEKTPQEW 425
G LDK G+ N+KTP +W
Sbjct: 371 AGTLDKFGRPNDKTPAKW 388
>gi|367037043|ref|XP_003648902.1| hypothetical protein THITE_2106879 [Thielavia terrestris NRRL 8126]
gi|346996163|gb|AEO62566.1| hypothetical protein THITE_2106879 [Thielavia terrestris NRRL 8126]
Length = 487
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 280/392 (71%), Positives = 334/392 (85%), Gaps = 4/392 (1%)
Query: 41 DNNATAKD--FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVD 98
D+ A D ++IKPQ+ PS+DTS WP+LLKNYD++ VR+GH+TP+PNG SP KR L
Sbjct: 3 DSAAQGDDGQYVIKPQTTVPSLDTSTWPLLLKNYDKMLVRSGHFTPIPNGSSPYKRDLKS 62
Query: 99 YIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 158
YI G+INLDKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVK+
Sbjct: 63 YISSGVINLDKPSNPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKA 122
Query: 159 QQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKL 217
QQ AGKEYV V R HD VP A+ALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL
Sbjct: 123 QQSAGKEYVAVIRFHDTVPGGEPAFAKALETLTGALFQRPPLISAVKRQLRIRTIHESKL 182
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEND-NMVTM 276
+E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG++ E+D +MVT+
Sbjct: 183 IEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGVMSEDDGSMVTL 242
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF 336
HDV+DAQW YDN DE+YLR+VI PLE LL +YKRLVVKD+ VNA+CYGAKLM+PGLLR+
Sbjct: 243 HDVLDAQWQYDNSGDESYLRKVIQPLETLLCTYKRLVVKDSAVNAVCYGAKLMLPGLLRY 302
Query: 337 ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG 396
+ I+ EEVVLMTTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLG
Sbjct: 303 DAGIDAHEEVVLMTTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLG 362
Query: 397 PRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
P A+ KKKL A+GKLDK+G+ NE TP W +N
Sbjct: 363 PVATEKKKLKADGKLDKYGRPNEATPAAWTQN 394
>gi|209881941|ref|XP_002142408.1| H/ACA ribonucleoprotein complex subunit 4 [Cryptosporidium muris
RN66]
gi|209558014|gb|EEA08059.1| H/ACA ribonucleoprotein complex subunit 4, putative
[Cryptosporidium muris RN66]
Length = 462
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 275/375 (73%), Positives = 326/375 (86%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
IKP++ +P IDTS+WP+LLKNY LNVRTGHYTPLP G SPL R L DY+ YG+INLDKP
Sbjct: 19 IKPENVSPPIDTSKWPLLLKNYSNLNVRTGHYTPLPFGSSPLNRNLSDYLSYGVINLDKP 78
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
ANPSSHEVVAWIK+ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ AGKEYVC+A
Sbjct: 79 ANPSSHEVVAWIKKILRCEKTGHSGTLDPKVTGCLLVCLNRATRLVKSQQSAGKEYVCIA 138
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
R H K VAR+LE LTGA+FQRPP+I+AVKRQLR+R+IYE+KLL+YD R+L VFW
Sbjct: 139 RFHAKPVSKFAVARSLETLTGALFQRPPVIAAVKRQLRVRSIYETKLLDYDEKRNLAVFW 198
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
CEAGTY+RTMCVH+GL+LGVG HMQELRRVRSG L ENDNMVTMHDV+DAQ++ DN +
Sbjct: 199 AKCEAGTYIRTMCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTMHDVLDAQYVLDNLK 258
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+Y+RRV+ PLE+LLT R+VVKD+ VNAICYGAKLMIPG+LRF+++I+V E+V+MT
Sbjct: 259 DESYMRRVVSPLEILLTDLPRVVVKDSCVNAICYGAKLMIPGVLRFDSNIDVDTEIVMMT 318
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEA+A+GIA+MTTAV+AT DHGVVA IKRV+M+RDTY +WG GPRAS KKKLI GK
Sbjct: 319 TKGEAIAIGIAQMTTAVIATVDHGVVAVIKRVIMERDTYDLRWGYGPRASEKKKLILGGK 378
Query: 411 LDKHGKLNEKTPQEW 425
LDK+GK NE+TP+ W
Sbjct: 379 LDKYGKPNEQTPKSW 393
>gi|432951236|ref|XP_004084763.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Oryzias
latipes]
Length = 499
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/422 (68%), Positives = 352/422 (83%), Gaps = 13/422 (3%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ DF I+P+S S++TSQWP+LLKN+D+LNVRTGHYTPLPNG +PLKR + DY+R G I
Sbjct: 28 SADFFIQPESKATSLNTSQWPLLLKNFDKLNVRTGHYTPLPNGSNPLKRNIADYVRSGFI 87
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKE
Sbjct: 88 NLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKE 147
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ V + +ARALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R
Sbjct: 148 YVGIVRLHNAVENQHALARALETLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERR 207
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG+LGE DNMVTMHDV+DAQW
Sbjct: 208 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNMVTMHDVLDAQWQ 267
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
+D+ +DE YLRRVI PLE LL S++RLV+KD++VNAICYGAK+M+PG+LR+E+ IEV ++
Sbjct: 268 FDHNKDETYLRRVIFPLEKLLVSHRRLVMKDSSVNAICYGAKIMLPGVLRYEDGIEVNQD 327
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ +A MTTAV++TCDHG VA+IKRV+M+RDTYPRKWGLGP+A+ KK +
Sbjct: 328 IVVITTKGEAICTAVALMTTAVISTCDHGFVAKIKRVIMERDTYPRKWGLGPKATQKKAM 387
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
I +G LDKHGK N TPQ+W + V SV + A A + +V KRK +A
Sbjct: 388 IQKGLLDKHGKPNGSTPQDWKEHYV----DYSVSVAAAEAPDSSV---------KRKREA 434
Query: 466 SG 467
SG
Sbjct: 435 SG 436
>gi|406605131|emb|CCH43424.1| H/ACA ribonucleoprotein complex subunit 4 [Wickerhamomyces
ciferrii]
Length = 483
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 273/381 (71%), Positives = 324/381 (85%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
IKP++ T S D S+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+INLDK
Sbjct: 6 FIKPENITSSQDASEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDK 65
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC+
Sbjct: 66 PSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCI 125
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R L VF
Sbjct: 126 VRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRGLGVF 185
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDV+DAQW YDN
Sbjct: 186 WASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALAENDNLVTLHDVLDAQWSYDNT 245
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE+YLRR+I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +EVVL+
Sbjct: 246 RDESYLRRIIQPLETLLLGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEVVLI 305
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+ I++M+T +A+CDHGVVA++KR +M+RD YPR+WGLGP A KK+L A+G
Sbjct: 306 TTKGEAIAIAISQMSTVDLASCDHGVVAKVKRCIMERDLYPRRWGLGPVAQKKKQLKADG 365
Query: 410 KLDKHGKLNEKTPQEWARNVV 430
KLDK G+ NE TP +W N V
Sbjct: 366 KLDKFGRTNENTPNDWKSNYV 386
>gi|19173790|ref|NP_596910.1| H/ACA ribonucleoprotein complex subunit 4 [Rattus norvegicus]
gi|2851506|sp|P40615.4|DKC1_RAT RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Dyskerin; AltName: Full=Nopp140-associated protein
of 57 kDa; AltName: Full=Nucleolar protein NAP57;
AltName: Full=Nucleolar protein family A member 4;
AltName: Full=snoRNP protein DKC1
gi|2739325|emb|CAA84402.1| NAP57 [Rattus norvegicus]
gi|71680944|gb|AAH99832.1| Dyskeratosis congenita 1, dyskerin [Rattus norvegicus]
Length = 509
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/427 (68%), Positives = 359/427 (84%), Gaps = 7/427 (1%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+DF+IKP+S +DTSQWP+LLKN+DRLNVRT HYTP+P G +PLKR + +Y+R G I
Sbjct: 34 AEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFI 93
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 94 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 153
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV V RLH+ + A+++RALE LTGA+FQRPPLI+AVKRQLR+RTIYES+++EYD +R
Sbjct: 154 YVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERR 213
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++GE D+MVTMHDV+DAQ+L
Sbjct: 214 LGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYL 273
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD++RDE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IEV +E
Sbjct: 274 YDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQE 333
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VV++TTKGEAV + IA MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK+L
Sbjct: 334 VVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKQL 393
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET---AGVKKRK 462
I +G LDKHG+ + TP W R+ V S + A AAE T T A + KRK
Sbjct: 394 IKQGLLDKHGRPTDGTPASWTRDYV----DYSDSSKKATAAEATPGPGVTADAASIVKRK 449
Query: 463 LDASGDS 469
D+ D+
Sbjct: 450 RDSDSDA 456
>gi|158297969|ref|XP_318082.4| AGAP004739-PA [Anopheles gambiae str. PEST]
gi|157014582|gb|EAA13199.5| AGAP004739-PA [Anopheles gambiae str. PEST]
Length = 521
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/418 (67%), Positives = 345/418 (82%), Gaps = 6/418 (1%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ DF +KP S S+DTS+WP+LLKN+DRLNVRT HYTPLP G SPL R + DY+ G I
Sbjct: 36 SGDFQLKPSSAIASLDTSKWPLLLKNFDRLNVRTNHYTPLPFGSSPLNRKINDYVSAGFI 95
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRIL+V KTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 96 NLDKPSNPSSHEVVAWIKRILKVNKTGHSGTLDPKVTGCLIVCINRATRLVKSQQSAGKE 155
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV V +LH V +AKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+Y+ R+
Sbjct: 156 YVAVFKLHSAVEKIAKVTQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYNDQRN 215
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVTMHDV+DAQ+L
Sbjct: 216 IGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSEKDGMVTMHDVLDAQYL 275
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
Y+N++DE+ LRRVI PLE LL +KR+++KD++VNA+CYGAK+++PG+LR+E+ IE+ +E
Sbjct: 276 YENHKDESMLRRVIKPLEGLLVGHKRIIMKDSSVNAVCYGAKILLPGVLRYEDGIEIDQE 335
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ALGIA MTTA MA CDHGVVA+IKRV+M+RDTYPRKWGLGP+ASMKK+L
Sbjct: 336 IVIVTTKGEAIALGIALMTTATMAGCDHGVVAKIKRVIMERDTYPRKWGLGPKASMKKQL 395
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
IA GKLDK+GK NE TP++W + D ++ A T A+ E AG KRKL
Sbjct: 396 IASGKLDKYGKPNENTPKDWLNSY-----SDFNRSAKQANGNGTSADDEFAG-GKRKL 447
>gi|126274082|ref|XP_001387815.1| nucleolar pseuduridine synthase and putative microtubule binding
protein [Scheffersomyces stipitis CBS 6054]
gi|126213685|gb|EAZ63792.1| nucleolar pseuduridine synthase and putative microtubule binding
protein [Scheffersomyces stipitis CBS 6054]
Length = 475
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 271/380 (71%), Positives = 331/380 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ ++ IKP++ +PS DTS+WP+LLKN+D+L VR+GHYTP+P+G SPLKR + YI G+I
Sbjct: 2 SDEYFIKPEAVSPSNDTSEWPLLLKNFDKLLVRSGHYTPIPSGSSPLKRDIKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRSEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLH+++ D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R
Sbjct: 122 YVCIVRLHEELKDAKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRG 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG LGENDN+VT+HDV+DAQ++
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALGENDNLVTLHDVLDAQYV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNSVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+MTT + CDHGVVA++KR +M+RDTYPR+WGLGP A KK++
Sbjct: 302 VVLMTTKGEAIAIGIAQMTTVDLQGCDHGVVAKVKRCIMERDTYPRRWGLGPVAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK G+ NE TP+ W
Sbjct: 362 KADGKLDKFGRANENTPETW 381
>gi|74141624|dbj|BAE38575.1| unnamed protein product [Mus musculus]
Length = 509
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/425 (67%), Positives = 356/425 (83%), Gaps = 3/425 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W ++ + G + + + A A Q A E V KRK D
Sbjct: 393 IKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTEAVQAPQLAA--EAVNVIKRKRD 450
Query: 465 ASGDS 469
+ +S
Sbjct: 451 SESES 455
>gi|406694863|gb|EKC98182.1| centromere/microtubule binding protein cbf5 [Trichosporon asahii
var. asahii CBS 8904]
Length = 489
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 298/434 (68%), Positives = 346/434 (79%), Gaps = 10/434 (2%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IK ++ TP +DTS+WP+LLKNYD+L VR+ H+TP+P G SPLKR L YI G INL
Sbjct: 12 DFAIKSEAVTPKLDTSEWPLLLKNYDKLLVRSSHFTPIPTGCSPLKRDLKTYIESGCINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILRV+KTGHSGTLDP VTG LIVCIDRATRLVKSQQGAGK YV
Sbjct: 72 DKPSNPSSHEVVAWIKRILRVQKTGHSGTLDPLVTGCLIVCIDRATRLVKSQQGAGKSYV 131
Query: 168 CVARLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
VARLH K P+ K V RA+E LTGA+FQRPPLISAVKRQLR+RTIY SKL+EYD DR
Sbjct: 132 VVARLHGK-PEGGKQAVERAMETLTGALFQRPPLISAVKRQLRVRTIYNSKLIEYDEDRG 190
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
LVV + CEAGTYVRT VHLGL+LGVG HMQELRRVRSGI GE D++VTMHDV+DAQWL
Sbjct: 191 LVVAQLDCEAGTYVRTWSVHLGLLLGVGAHMQELRRVRSGITGEGDDIVTMHDVLDAQWL 250
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DIEVGEE
Sbjct: 251 YDNTRDESYLRRVIKPLEALLTNYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADIEVGEE 310
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+M+TA +A+CDHGVVA++KR +M+RD YPR+WGLGP+A KKK+
Sbjct: 311 VVLMTTKGEAIAVGIAQMSTADLASCDHGVVAKVKRCIMNRDLYPRRWGLGPKAQEKKKM 370
Query: 406 IAEGKLDKHGK-LNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I G LDKHGK ++ TP W +N V G A+ A Q A+K + K+D
Sbjct: 371 IKAGALDKHGKTIDGVTPDSWKKNYV-DYGEQEAAANAALLPTQPEADK-----AEDKMD 424
Query: 465 ASGDSPALNAKKAK 478
+P AK K
Sbjct: 425 TDSPAPVTPAKTEK 438
>gi|328863728|gb|EGG12827.1| hypothetical protein MELLADRAFT_25274 [Melampsora larici-populina
98AG31]
Length = 398
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 289/397 (72%), Positives = 342/397 (86%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+I+ S TP ++TSQWP+LLKNYD+L +R+ H+TP+P G SPLKRPL DYI+ G+INL
Sbjct: 1 DFLIQSASTTPQLNTSQWPLLLKNYDKLLIRSSHFTPIPCGSSPLKRPLKDYIKTGVINL 60
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWI+RILR +KTGHSGTLDPKVTG L+VCIDRATRLVKSQQGAGKEYV
Sbjct: 61 DKPSNPSSHEVVAWIRRILRSDKTGHSGTLDPKVTGCLLVCIDRATRLVKSQQGAGKEYV 120
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH + ++RALE LTGA+FQRPPLISAVKRQLRIRTIYE+KL+E+D RHL
Sbjct: 121 CVLRLHSSLQTEKALSRALETLTGALFQRPPLISAVKRQLRIRTIYETKLIEFDNKRHLA 180
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG +GEND +VTMHDV+DAQW+YD
Sbjct: 181 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMGENDGIVTMHDVLDAQWVYD 240
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LLT YKR+VVKDT VNA+CYGAKLMIPGLLR+E DIE+ EEVV
Sbjct: 241 NTRDESYLRRVIRPLESLLTGYKRIVVKDTAVNAVCYGAKLMIPGLLRYEADIELNEEVV 300
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+GIA+MTT +ATCDHGVVA++KR +M+RDTYPR+WGLGP+A KKK+I
Sbjct: 301 LMTTKGEAIAIGIAQMTTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPKAQEKKKMIK 360
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAA 444
G+LDK+G+ NEKTP +W GG ++ AA
Sbjct: 361 VGELDKYGRANEKTPSKWREGYTDYSGGADPTSAPAA 397
>gi|448513805|ref|XP_003867014.1| Cbf5 protein [Candida orthopsilosis Co 90-125]
gi|380351352|emb|CCG21576.1| Cbf5 protein [Candida orthopsilosis Co 90-125]
Length = 472
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 272/379 (71%), Positives = 332/379 (87%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF IKP+S TP+ +TS+WP+LLKNYD+L VR+GHYTP+P G SP R L Y+ G+IN
Sbjct: 4 EDFQIKPESVTPTNNTSEWPLLLKNYDKLLVRSGHYTPIPAGSSPNSRDLKSYVSSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD++ D ++ RALE LTGA+FQRPPLISAVKRQLR+RT+Y+SKL+E+D R L
Sbjct: 124 VCIVRLHDQLQDPKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNKRGL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + E+DN+VT+HDV+DAQ++Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHDVLDAQYVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+ +EV
Sbjct: 244 DNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNSVCYGAKLMIPGLLRYEEGIELYDEV 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+GIA+MTT + CDHGVVA++KR +M+RDTYPR+WGLGP A KK+L
Sbjct: 304 VLITTKGEAIAIGIAQMTTVDLQGCDHGVVAKVKRCIMERDTYPRRWGLGPVAQKKKQLK 363
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G++NE TP+ W
Sbjct: 364 ADGKLDKYGRVNENTPETW 382
>gi|354546883|emb|CCE43615.1| hypothetical protein CPAR2_212590 [Candida parapsilosis]
Length = 474
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 271/379 (71%), Positives = 331/379 (87%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F IKP+S TPS +TS+WP+LLKNYD+L VR+ HYTP+P G SP R L Y+ G+IN
Sbjct: 4 EEFQIKPESVTPSNNTSEWPLLLKNYDKLLVRSSHYTPIPAGSSPNSRDLKSYVSSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD++ D ++ RALE LTGA+FQRPPLISAVKRQLR+RT+Y+SKL+E+D R L
Sbjct: 124 VCIVRLHDQLQDPKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNKRGL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + E+DN+VT+HDV+DAQ++Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHDVLDAQYVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+ +EV
Sbjct: 244 DNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNSVCYGAKLMIPGLLRYEQGIELYDEV 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+GIA+MTT + CDHGVVA++KR +M+RDTYPR+WGLGP A KK+L
Sbjct: 304 VLITTKGEAIAIGIAQMTTVDLQGCDHGVVAKVKRCIMERDTYPRRWGLGPVAQKKKQLK 363
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G++NE TP+ W
Sbjct: 364 ADGKLDKYGRVNENTPETW 382
>gi|71895397|ref|NP_001026286.1| H/ACA ribonucleoprotein complex subunit 4 [Gallus gallus]
gi|67460227|sp|Q5ZJH9.1|DKC1_CHICK RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Dyskerin
gi|53133570|emb|CAG32114.1| hypothetical protein RCJMB04_17p9 [Gallus gallus]
Length = 516
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/436 (67%), Positives = 362/436 (83%), Gaps = 8/436 (1%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D D D T ++F+IKP+S +DTSQWP+LLKN+D+LNV T HYTPLP+G +PLKR
Sbjct: 22 DEDVADIQHT-EEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPSGANPLKRE 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ DY+R G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRL
Sbjct: 81 ISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + RLH+ + A++ARA+E LTGA+FQRPPLI+AVKRQLR+RTIYES
Sbjct: 141 VKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQLRVRTIYES 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KL+EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSGILGE DNMVT
Sbjct: 201 KLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DAQW YDN +D++YLRRVI+PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR
Sbjct: 261 MHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V++TTKGEA+ L IA MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASL--AAAAEQTVAEK 453
GP+AS KK +I +G LDKHGK NE TP W + V D +S AA Q V+E
Sbjct: 381 GPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV-----DYRESSKKEAAKVPQAVSEV 435
Query: 454 ETAGVKKRKLDASGDS 469
E A +KR+ ++ ++
Sbjct: 436 ERAPKRKRESESENEA 451
>gi|410898744|ref|XP_003962857.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Takifugu
rubripes]
Length = 497
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 291/426 (68%), Positives = 349/426 (81%), Gaps = 11/426 (2%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP+S PS+DTS WP+LLKN+D+LNVRT HYTPLPNG +PLKR + DY+R G INL
Sbjct: 29 DFFIKPESKVPSLDTSHWPLLLKNFDKLNVRTAHYTPLPNGSNPLKRNIHDYVRSGFINL 88
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV
Sbjct: 89 DKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYV 148
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + +ARALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R
Sbjct: 149 GIVRLHNAIESEHTLARALEMLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRFG 208
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG+LGE DNMVTMHDV+DAQW +D
Sbjct: 209 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNMVTMHDVLDAQWQFD 268
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
+ +DE+YLRRVI PLE LL SYKRLV+KD+ VNAICYGAK+M+PG+LR+E+ IE+ +++V
Sbjct: 269 HNKDESYLRRVIFPLEKLLVSYKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIELNQDIV 328
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ +A MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 329 VITTKGEAICTAVALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQ 388
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
+G LDKHGK N TP +W RN D V S+ EQ A TA K+ D G
Sbjct: 389 KGLLDKHGKPNSSTPSDW-RN-------DYVDYSIKVNQEQNEA---TAKRKRETSDTDG 437
Query: 468 DSPALN 473
+S N
Sbjct: 438 ESSLPN 443
>gi|330802465|ref|XP_003289237.1| hypothetical protein DICPUDRAFT_35400 [Dictyostelium purpureum]
gi|325080682|gb|EGC34227.1| hypothetical protein DICPUDRAFT_35400 [Dictyostelium purpureum]
Length = 545
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 269/377 (71%), Positives = 337/377 (89%), Gaps = 1/377 (0%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKP+ TP++DTS+WP+LLKNYD+L VRTGHYTP+PNG+SPLKRP+ +YI+YGIINLDK
Sbjct: 34 VIKPEK-TPTLDTSKWPLLLKNYDQLLVRTGHYTPIPNGHSPLKRPIKEYIKYGIINLDK 92
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVVAWI+ ILRV+KTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGKEY+ +
Sbjct: 93 PSNPSSHEVVAWIRTILRVQKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGI 152
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLH+ + +V+++++A++ L GA+FQRPP SAVK++LR+RTI+ESKL+EYD +R+L +
Sbjct: 153 VRLHNAIENVSELSKAVDTLRGALFQRPPQKSAVKKRLRVRTIHESKLIEYDPERNLGLI 212
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+ CEAGTY+RT+CVH+GL++GVGGHMQELRRVRSGI+ E MVTMHDV DAQ+ +DN
Sbjct: 213 WVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGMVTMHDVKDAQYEFDNS 272
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+DEAYLRRV+ PLE +LT+YKR+VVKD+ +NAICYGAKLMIPGLLR+E DIE EEVVL+
Sbjct: 273 KDEAYLRRVVQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEVVLI 332
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+G+A+MTTA MATCDHGVVA IKRV+MDRD YP +WGLGP+A +KK++I +G
Sbjct: 333 TTKGEAIAIGVAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMIKDG 392
Query: 410 KLDKHGKLNEKTPQEWA 426
KLDK+GK NEKTP +W
Sbjct: 393 KLDKYGKPNEKTPSDWT 409
>gi|1093316|prf||2103261A nuclear protein NAP57
Length = 466
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/427 (68%), Positives = 359/427 (84%), Gaps = 7/427 (1%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+DF+IKP+S +DTSQWP+LLKN+DRLNVRT HYTP+P G +PLKR + +Y+R G I
Sbjct: 34 AEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFI 93
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 94 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 153
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV V RLH+ + A+++RALE LTGA+FQRPPLI+AVKRQLR+RTIYES+++EYD +R
Sbjct: 154 YVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERR 213
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++GE D+MVTMHDV+DAQ+L
Sbjct: 214 LGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYL 273
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD++RDE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IEV +E
Sbjct: 274 YDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQE 333
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VV++TTKGEAV + IA MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK+L
Sbjct: 334 VVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKQL 393
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET---AGVKKRK 462
I +G LDKHG+ + TP W R+ V S + A AAE T T A + KRK
Sbjct: 394 IKQGLLDKHGRPTDGTPASWTRDYV----DYSDSSKKATAAEATPGPGVTADAASIVKRK 449
Query: 463 LDASGDS 469
D+ D+
Sbjct: 450 RDSDSDA 456
>gi|149758940|ref|XP_001499071.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 1
[Equus caballus]
Length = 510
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/426 (67%), Positives = 356/426 (83%), Gaps = 1/426 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK E TP W + V + V + AA A Q VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTESTPVAWTQEYVDYSDSAKTEVVAKAAQAPQVVAEVVKTPKRKRESE 452
Query: 465 ASGDSP 470
+ SP
Sbjct: 453 SDETSP 458
>gi|323508236|emb|CBQ68107.1| probable CBF5-Centromere Binding Factor / putative rRNA
pseuduridine synthase [Sporisorium reilianum SRZ2]
Length = 497
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 293/403 (72%), Positives = 346/403 (85%), Gaps = 5/403 (1%)
Query: 29 ALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNG 88
AL T+ A+A + DF+IKP++ P ++TS+WP+LLKNYD+L VR+ H+TP+P+G
Sbjct: 2 ALPLGTSIAEAQEKG----DFMIKPENSGPKLNTSEWPLLLKNYDQLLVRSSHFTPIPHG 57
Query: 89 YSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVC 148
SPLKR L YIR G+INLDKP+NPSSHEVV+W++RILRVEKTGHSGTLDPKVTG LIVC
Sbjct: 58 CSPLKRDLQSYIRSGVINLDKPSNPSSHEVVSWLRRILRVEKTGHSGTLDPKVTGCLIVC 117
Query: 149 IDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLR 208
IDRATRLVKSQQGAGKEYV V RLHDK+ D K+ RA+E LTG++FQRPPLISAVKRQLR
Sbjct: 118 IDRATRLVKSQQGAGKEYVAVLRLHDKLDDAKKLPRAIETLTGSLFQRPPLISAVKRQLR 177
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
IRTIYESKL+E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L
Sbjct: 178 IRTIYESKLIEFDNDRHLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALS 237
Query: 269 ENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
END++VTMHDV+DAQWLYDN RDE YLRRVI PLE LLT YKR+VVKD+ VNA+CYGAKL
Sbjct: 238 ENDSIVTMHDVLDAQWLYDNQRDETYLRRVIRPLESLLTGYKRIVVKDSAVNAVCYGAKL 297
Query: 329 MIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388
MIPGLLR+E DIEV EEVVLMTTKGEA+AL IA+M+T ++TCDHGVVA++KR +M+RDT
Sbjct: 298 MIPGLLRYEKDIEVHEEVVLMTTKGEAIALAIAQMSTVDLSTCDHGVVAKVKRCIMERDT 357
Query: 389 YPRKWGLGPRASMKKKLIAEGKLDKHGK-LNEKTPQEWARNVV 430
YPR+WGLGP+A KK +I GKLDKHGK +N TP +W + V
Sbjct: 358 YPRRWGLGPKAQEKKAMIKTGKLDKHGKAINGVTPDKWKKEYV 400
>gi|344305042|gb|EGW35274.1| nucleolar pseudouridine synthase and putative microtubule binding
protein [Spathaspora passalidarum NRRL Y-27907]
Length = 465
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 271/378 (71%), Positives = 329/378 (87%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F+IKP+S PS DTS+WP+LLKNYD+L VR+GHYTP+P G SPLKR L Y+ G+INL
Sbjct: 4 EFVIKPESVAPSNDTSEWPLLLKNYDKLLVRSGHYTPIPAGASPLKRDLKSYVSSGVINL 63
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 64 DKPSNPSSHEVVAWIKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 123
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD++ + ++ + LE LTGA+FQRPPLISAVKRQLR+RTIY+SKL+E+D R L
Sbjct: 124 CIVRLHDELENAKELGQTLENLTGALFQRPPLISAVKRQLRVRTIYDSKLIEFDNKRGLG 183
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L E D MVT+HDV+DAQ++YD
Sbjct: 184 VFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSEADEMVTLHDVLDAQFVYD 243
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+ +EVV
Sbjct: 244 NTRDESYLRKIIKPLETLLVGYKRIVVKDSAVNSVCYGAKLMIPGLLRYEEGIELYDEVV 303
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+GIA+MTT + +CDHG+VA++KR +M+RDTYPR+WGLGP A KK+L A
Sbjct: 304 LITTKGEAIAIGIAQMTTVDLQSCDHGIVAKVKRCIMERDTYPRRWGLGPVAQKKKQLKA 363
Query: 408 EGKLDKHGKLNEKTPQEW 425
+GKLDK G++NE TP+ W
Sbjct: 364 DGKLDKFGRVNENTPETW 381
>gi|396494996|ref|XP_003844439.1| similar to centromere/microtubule-binding protein cbf5
[Leptosphaeria maculans JN3]
gi|312221019|emb|CBY00960.1| similar to centromere/microtubule-binding protein cbf5
[Leptosphaeria maculans JN3]
Length = 488
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 277/378 (73%), Positives = 325/378 (85%), Gaps = 1/378 (0%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKP + P+IDTS WP+LLKNY L VRT HYTP+PNG +PL R L YI G+INLD
Sbjct: 11 YVIKPAASAPAIDTSDWPLLLKNYSDLLVRTSHYTPIPNGCAPLSRDLKSYISSGVINLD 70
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 71 KPSNPSSHEVVSWIKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 130
Query: 169 VARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +R L
Sbjct: 131 VIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERQLG 190
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DAQWL+D
Sbjct: 191 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTLHDVLDAQWLHD 250
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR+VI PLE LL SYKR+VVKD++VNAICYGAKLM+PGLLRFE IE+ EEVV
Sbjct: 251 NNRDESYLRKVIAPLESLLMSYKRIVVKDSSVNAICYGAKLMLPGLLRFEKGIEIHEEVV 310
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL A+M+ M++CDHGVVA+IKRV+M+RD YPR+WG+GP A+ KKK+
Sbjct: 311 LMTTKGEAIALAYAQMSAVEMSSCDHGVVAKIKRVIMERDLYPRRWGMGPVATEKKKMKE 370
Query: 408 EGKLDKHGKLNEKTPQEW 425
G LDK G+ NEKTP +W
Sbjct: 371 AGTLDKFGRPNEKTPAKW 388
>gi|335775320|gb|AEH58532.1| H/ACA ribonucleoprotein complex subunit-like protein, partial
[Equus caballus]
Length = 507
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 283/408 (69%), Positives = 348/408 (85%), Gaps = 1/408 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 21 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 80
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 81 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 140
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 141 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 200
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 201 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 260
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 261 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 320
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 321 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLM 380
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAE 452
I +G LDKHGK E TP W + V + V + AA A Q VAE
Sbjct: 381 IKQGLLDKHGKPTESTPVAWTQEYVDYSDSAKTEVVAKAAQAPQVVAE 428
>gi|351712075|gb|EHB14994.1| H/ACA ribonucleoprotein complex subunit 4 [Heterocephalus glaber]
Length = 708
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 277/385 (71%), Positives = 338/385 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR L DYIR G I
Sbjct: 214 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKRELGDYIRTGFI 273
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 274 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 333
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD ++
Sbjct: 334 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPEKR 393
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 394 LGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 453
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 454 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 513
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 514 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 573
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
I +G LDKHGK E TP W + V
Sbjct: 574 IKQGLLDKHGKPTESTPATWKQEYV 598
>gi|328771089|gb|EGF81129.1| hypothetical protein BATDEDRAFT_16206 [Batrachochytrium
dendrobatidis JAM81]
Length = 474
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/420 (69%), Positives = 349/420 (83%)
Query: 45 TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
T +DF+IK S TP++DTS+WP+LLKNYD+LNVRT HYTP+P+G +PLKR L YI+ G+
Sbjct: 8 TEQDFVIKSSSVTPTLDTSEWPLLLKNYDKLNVRTSHYTPIPSGCAPLKRDLSTYIKCGV 67
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGK
Sbjct: 68 INLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGK 127
Query: 165 EYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
EYVCV RLHD + K+A+ +E LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DR
Sbjct: 128 EYVCVLRLHDLIESEKKLAQGIETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDR 187
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
HL VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG +GE+D MVTMHD++DAQW
Sbjct: 188 HLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMGEDDEMVTMHDILDAQW 247
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
+YDN +DE+YLRRV+ PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ ++ E
Sbjct: 248 VYDNNKDESYLRRVVRPLETLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRYESGVDTHE 307
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
EVVLMTTKGEA+AL A M+TA MA+CDHGVVA+IKRV+M+RDTYPRKWGLGP A KKK
Sbjct: 308 EVVLMTTKGEAIALAYAMMSTAEMASCDHGVVAKIKRVIMERDTYPRKWGLGPIAQEKKK 367
Query: 405 LIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
+I GKLDK+G+ +++ + ++ S ++ + A VKKRK D
Sbjct: 368 MIKSGKLDKYGRPIDESSSTYTKDYATGGAAKSATMDISPQKPMITEVEPVAEVKKRKAD 427
>gi|67903728|ref|XP_682120.1| CBF5_EMENI Centromere/microtubule binding protein CBF5
(Centromere-binding factor 5) (Nucleolar protein CBF5)
[Aspergillus nidulans FGSC A4]
gi|40740949|gb|EAA60139.1| CBF5_EMENI Centromere/microtubule binding protein CBF5
(Centromere-binding factor 5) (Nucleolar protein CBF5)
[Aspergillus nidulans FGSC A4]
Length = 490
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/419 (69%), Positives = 343/419 (81%), Gaps = 12/419 (2%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ +I+T WP+LLKNYD+L VRTGH+TP+P G SPLKR L YI G+INL
Sbjct: 6 DYTIKPEATASNINTEDWPLLLKNYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINL 65
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 66 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 125
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 126 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 185
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN+ MVT+HDV+DAQWLY
Sbjct: 186 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMVTLHDVLDAQWLY 245
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF---------E 337
DN RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRF E
Sbjct: 246 DNQRDESYLRKVIKPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFGQKSLTWGLE 305
Query: 338 NDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGP 397
IE+GEEVVLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP
Sbjct: 306 AGIELGEEVVLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGP 365
Query: 398 RASMKKKLIAEGKLDKHGKLNEKTPQEWARNV--VLPPGGDSVVASLAAAAEQTVAEKE 454
A KKKL + GKLDK+G+ NE TP +W P GDS ++ A++ + KE
Sbjct: 366 VALEKKKLKSSGKLDKYGRANEATPAKWKSEYKDYSAPDGDSSQQAVDVVAKEEASPKE 424
>gi|116206688|ref|XP_001229153.1| centromere/microtubule binding protein CBF5 [Chaetomium globosum
CBS 148.51]
gi|88183234|gb|EAQ90702.1| centromere/microtubule binding protein CBF5 [Chaetomium globosum
CBS 148.51]
Length = 485
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 270/383 (70%), Positives = 329/383 (85%), Gaps = 2/383 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+++IKPQ+ P+++TS WP+LLKNYD++ VR+GH+TP+PNG SP KR + Y+ G+INL
Sbjct: 17 EYMIKPQTLVPTLNTSDWPLLLKNYDKMLVRSGHFTPIPNGSSPYKRDIKSYVSSGVINL 76
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVK+QQGAGKEYV
Sbjct: 77 DKPSNPSSHEVVAWLKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYV 136
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V R HD +P A+ALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRHL
Sbjct: 137 AVVRFHDTIPGGEPAFAKALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRHL 196
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE-NDNMVTMHDVMDAQWL 285
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG++ E N ++VT+HDV+DAQW
Sbjct: 197 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGVMSEDNGSLVTLHDVLDAQWQ 256
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN DE+YLR+VI PLE LL +YKRLVVKD+ VNA+CYGAKLM+PGLLR++ I+ EE
Sbjct: 257 YDNGGDESYLRKVIQPLETLLCTYKRLVVKDSAVNAVCYGAKLMLPGLLRYDAGIDAHEE 316
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 317 VVLMTTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAMEKKKL 376
Query: 406 IAEGKLDKHGKLNEKTPQEWARN 428
A+GKLDK G+ NE TP +W +
Sbjct: 377 KADGKLDKFGRTNEATPAKWQQG 399
>gi|149248302|ref|XP_001528538.1| centromere/microtubule-binding protein CBF5 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448492|gb|EDK42880.1| centromere/microtubule-binding protein CBF5 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 476
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 269/379 (70%), Positives = 334/379 (88%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF IKP++ TP+ +TS WP+LLKNYD+L VR+GHYTP+P G SP R L Y+ G+IN
Sbjct: 4 EDFQIKPEAVTPANNTSDWPLLLKNYDKLLVRSGHYTPIPAGSSPNNRDLKSYVSSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD++ + ++ RALE LTGA+FQRPPLISAVKRQLR+RT+Y+SKL+E+D R L
Sbjct: 124 VCIVRLHDQLEEPKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNKRGL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + E+DN+VT+HDV+DAQ++Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHDVLDAQYVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR++I PLE LL YKRLVVKD+ VN++CYGAKLM+PGLLR+E+ IE+ +EV
Sbjct: 244 DNTRDESYLRKIIQPLETLLVGYKRLVVKDSAVNSVCYGAKLMLPGLLRYESGIELYDEV 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+GIA+MTT + +CDHGVVA++KR +M+RDTYPR+WGLGP A KK+L
Sbjct: 304 VLITTKGEAIAIGIAQMTTVDLQSCDHGVVAKVKRCIMERDTYPRRWGLGPVAQKKKQLK 363
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G++N++TP+ W
Sbjct: 364 ADGKLDKYGRVNDETPETW 382
>gi|345328464|ref|XP_001514686.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4
[Ornithorhynchus anatinus]
Length = 598
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/422 (67%), Positives = 352/422 (83%), Gaps = 3/422 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP+G +PLKR + +Y+R G INL
Sbjct: 116 EFFIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPSGSNPLKREIAEYVRTGFINL 175
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 176 DKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYV 235
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 236 GIVRLHNAIEGEIQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLG 295
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++GE D+MVTMHDV+DAQW YD
Sbjct: 296 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMGEKDHMVTMHDVLDAQWQYD 355
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE+YLRRVI PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+V
Sbjct: 356 NNKDESYLRRVIYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIV 415
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 416 VITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIK 475
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
+G LDKHGK NE TP W ++ V + V VA E A V+KRK ++
Sbjct: 476 QGLLDKHGKPNESTPTTWKQDYV---DYRATVKKEPVTPVTPVAPVEVAKVQKRKRESGS 532
Query: 468 DS 469
+S
Sbjct: 533 ES 534
>gi|344306159|ref|XP_003421756.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Loxodonta africana]
Length = 604
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 288/426 (67%), Positives = 358/426 (84%), Gaps = 5/426 (1%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP+G +PLKR + DYIR G I
Sbjct: 126 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPSGSNPLKREIADYIRTGFI 185
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 186 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 245
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLHD + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 246 YVGIVRLHDAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 305
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 306 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 365
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRVI PLE LLTS+KRLV+KD+ VNAICYGAK+++PG+LR+E+ IEV +E
Sbjct: 366 YDNHKDESYLRRVIYPLEKLLTSHKRLVMKDSAVNAICYGAKILLPGVLRYEDGIEVNQE 425
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 426 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRMM 485
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSV---VASLAAAAEQTVAEKETAGVKKRK 462
I +G LDKHGK + TP W + V DSV V + A + Q VAE + +KR+
Sbjct: 486 IKQGLLDKHGKPTDSTPAAWVQQYV--DYSDSVKKEVVAEAVKSPQVVAETVESQKRKRE 543
Query: 463 LDASGD 468
D+ D
Sbjct: 544 SDSESD 549
>gi|338729701|ref|XP_003365960.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 2
[Equus caballus]
Length = 522
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 283/408 (69%), Positives = 348/408 (85%), Gaps = 1/408 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 35 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 94
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 95 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 154
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 155 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 214
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 215 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 274
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 275 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 334
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 335 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLM 394
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAE 452
I +G LDKHGK E TP W + V + V + AA A Q VAE
Sbjct: 395 IKQGLLDKHGKPTESTPVAWTQEYVDYSDSAKTEVVAKAAQAPQVVAE 442
>gi|289741503|gb|ADD19499.1| pseudouridine synthase [Glossina morsitans morsitans]
Length = 613
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 278/431 (64%), Positives = 349/431 (80%), Gaps = 6/431 (1%)
Query: 40 DDNNAT---AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPL 96
DD+ T + +F +KP + +DTS+WP+LLKN+D+LNVRT HYTPLP+G SPL R +
Sbjct: 22 DDDVGTLQKSANFTLKPSAKAAKLDTSKWPLLLKNFDKLNVRTNHYTPLPHGSSPLNRDI 81
Query: 97 VDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLV 156
+YI+ G INLDKP+NPSSHEVVAWIKRIL+V+KTGHSGTLDPKVTG LIVCIDR TRLV
Sbjct: 82 KEYIKSGFINLDKPSNPSSHEVVAWIKRILKVDKTGHSGTLDPKVTGCLIVCIDRTTRLV 141
Query: 157 KSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESK 216
KSQQ AGKEYV + +LH V V+KV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SK
Sbjct: 142 KSQQSAGKEYVAIFKLHSPVESVSKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSK 201
Query: 217 LLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTM 276
LL+YD R++ VFW+SCEAG+Y+RTMCVHLGLILGVGG M ELRRVRSGI E DN+VTM
Sbjct: 202 LLDYDESRNMGVFWVSCEAGSYIRTMCVHLGLILGVGGQMLELRRVRSGIQTERDNIVTM 261
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF 336
HDV+DA +LY+N++DE+ LRRVI PLE LL ++KR+++KD+++NA+CYGAK+M+PG+LR+
Sbjct: 262 HDVLDAMYLYENHKDESMLRRVIRPLEGLLINHKRIIMKDSSINAVCYGAKIMLPGVLRY 321
Query: 337 ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG 396
E+ IE+ +E+V+ TTKGEA+ L IA+MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGLG
Sbjct: 322 EDGIEIDQEIVICTTKGEAICLAIAQMTTATMASCDHGVVAKIKRVIMERDTYPRKWGLG 381
Query: 397 PRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETA 456
P+AS KK LIA GKLDK+G+ NE TP+EW + V AA + ++ET
Sbjct: 382 PKASAKKALIAAGKLDKYGRANENTPKEWLTSFVDYNAKKPAAIVAPQAAWEIHPQEET- 440
Query: 457 GVKKRKLDASG 467
+KRKL SG
Sbjct: 441 --RKRKLSVSG 449
>gi|291411966|ref|XP_002722254.1| PREDICTED: dyskerin [Oryctolagus cuniculus]
Length = 512
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/424 (67%), Positives = 354/424 (83%), Gaps = 1/424 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V G V + A A Q VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTDSTPPSWKQEYVDYSDSGKKEVVAEAVQAPQIVAEAVQVPKRKRESE 452
Query: 465 ASGD 468
+ D
Sbjct: 453 SESD 456
>gi|301791932|ref|XP_002930934.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Ailuropoda melanoleuca]
Length = 507
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 289/430 (67%), Positives = 358/430 (83%), Gaps = 5/430 (1%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + ++++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGSQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSV---VASLAAAAEQTVAEKETAGVKKRK 462
I +G LDKHGK + TP W + V DS V + A A Q VAE A +KR+
Sbjct: 393 IKQGLLDKHGKPTDSTPATWMQEYV--DYSDSAKREVGARALEAAQEVAEVVKAPKRKRE 450
Query: 463 LDASGDSPAL 472
++ S L
Sbjct: 451 SESDETSAQL 460
>gi|345560107|gb|EGX43235.1| hypothetical protein AOL_s00215g609 [Arthrobotrys oligospora ATCC
24927]
Length = 477
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/378 (75%), Positives = 334/378 (88%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
++ IKP++ +P+ DTS WP+LLKNYD+L VRTGH+TP+P G PLKR L Y+ G+INL
Sbjct: 11 EYAIKPENISPTTDTSTWPLLLKNYDKLRVRTGHFTPIPVGCPPLKRDLKSYVSSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRIL+++KTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWIKRILKIDKTGHSGTLDPKVTGCLIVCLDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLHDKV A VARALE LTGA+FQRPPLISAVKRQLR+RTIYESKLLE+D DRHL
Sbjct: 131 CVLRLHDKVTSEATVARALETLTGALFQRPPLISAVKRQLRVRTIYESKLLEFDNDRHLA 190
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L ENDN+VT+HDV+DAQW+Y+
Sbjct: 191 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALSENDNIVTLHDVLDAQWMYE 250
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLM+PGLLRFE+ IEV EEVV
Sbjct: 251 NTRDETYLRRVIRPLESLLLGYKRIVVKDSAVNAVCYGAKLMLPGLLRFEDGIEVHEEVV 310
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+GIA+M+T M TCDHGVVA++KR +M+RD YPR+WG+GP A+ KKKL A
Sbjct: 311 LMTTKGEAIAIGIAQMSTVEMTTCDHGVVAKVKRCIMERDLYPRRWGMGPIATEKKKLKA 370
Query: 408 EGKLDKHGKLNEKTPQEW 425
+GKLDK G+ NE TP++W
Sbjct: 371 DGKLDKFGRTNEATPKKW 388
>gi|71004332|ref|XP_756832.1| hypothetical protein UM00685.1 [Ustilago maydis 521]
gi|46095634|gb|EAK80867.1| hypothetical protein UM00685.1 [Ustilago maydis 521]
Length = 496
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 287/384 (74%), Positives = 339/384 (88%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP++ P ++TS+WP+LLKNYD+L VR+ H+TP+P+G SPLKR L YI+ G+INL
Sbjct: 17 DFMIKPENSGPKLNTSEWPLLLKNYDQLLVRSSHFTPIPHGCSPLKRDLQSYIKSGVINL 76
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVV+W++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 77 DKPSNPSSHEVVSWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 136
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDK+ D K+ RA+E LTG++FQRPPLISAVKRQLRIRTIYESKL+E+D DRHL
Sbjct: 137 AVLRLHDKLEDAKKLPRAIETLTGSLFQRPPLISAVKRQLRIRTIYESKLIEFDNDRHLA 196
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L END++VTMHDV+DAQWLYD
Sbjct: 197 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALSENDSIVTMHDVLDAQWLYD 256
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE YLRRVI PLE LLT YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DIEV EEVV
Sbjct: 257 NQRDETYLRRVIRPLESLLTGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEKDIEVHEEVV 316
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+M+T ++TCDHGVVA++KR +M+RDTYPR+WGLGP+A KK +I
Sbjct: 317 LMTTKGEAIALAIAQMSTVDLSTCDHGVVAKVKRCIMERDTYPRRWGLGPKAQEKKAMIK 376
Query: 408 EGKLDKHGK-LNEKTPQEWARNVV 430
GKLDKHGK +N TP +W ++ V
Sbjct: 377 TGKLDKHGKAINGVTPDKWKKDYV 400
>gi|403217428|emb|CCK71922.1| hypothetical protein KNAG_0I01310 [Kazachstania naganishii CBS
8797]
Length = 480
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 273/380 (71%), Positives = 324/380 (85%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+KD +IKP+ +TS+WP+LLKNYD+L VR+GHYTP+P G SPLKR L YI G+I
Sbjct: 2 SKDHVIKPEDSGAVANTSEWPLLLKNYDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRQLETLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L END MVT+HDV+DAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDEMVTLHDVLDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ IE+ +E
Sbjct: 242 YDNTRDETYLRNIIKPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEDGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M T +ATCDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLITTKGEAIAVAIAQMATVDLATCDHGVVATVKRCIMERDLYPRRWGLGPIAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+LNE TP++W
Sbjct: 362 KADGKLDKYGRLNESTPEDW 381
>gi|74009203|ref|XP_549382.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Canis lupus
familiaris]
Length = 517
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/440 (66%), Positives = 357/440 (81%), Gaps = 15/440 (3%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV EE
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNEE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSV---VASLAAAAEQTVAE--------KE 454
I +G LDKHGK + TP W + V DS V + A A Q V E E
Sbjct: 393 IKQGLLDKHGKPTDSTPATWMQEYV--DYSDSAKKEVVAKAGTAAQEVTEVVKSPKVAAE 450
Query: 455 TAGVKKRKLDASGD--SPAL 472
KRK D+ D SP L
Sbjct: 451 VVKAPKRKRDSESDELSPQL 470
>gi|170041155|ref|XP_001848339.1| H/ACA ribonucleoprotein complex subunit 4 [Culex quinquefasciatus]
gi|167864704|gb|EDS28087.1| H/ACA ribonucleoprotein complex subunit 4 [Culex quinquefasciatus]
Length = 515
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/438 (66%), Positives = 350/438 (79%), Gaps = 21/438 (4%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP ++TS+WP+LLKN+DRLNVRT HYTPLP G SPL R + DY+ G INL
Sbjct: 34 DFQIKPSEAIAKLETSKWPLLLKNFDRLNVRTNHYTPLPFGSSPLNRKIKDYVTSGFINL 93
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 94 DKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYV 153
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+YD R++
Sbjct: 154 AVFKLHSAVESVAKVNQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDDQRNMG 213
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAG+Y+RTMCVHLGL+ GVGG M ELRRVRSGI E D MVTMHDV+DAQ+LY+
Sbjct: 214 VFWVSCEAGSYIRTMCVHLGLVTGVGGQMLELRRVRSGIQSEKDGMVTMHDVLDAQYLYE 273
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE+ LRRVI PLE LL +KR+++KD++VNA+CYGAK+MIPG+LR+E+ IEV +E+V
Sbjct: 274 NHKDESMLRRVIKPLEGLLIGHKRIIMKDSSVNAVCYGAKIMIPGVLRYEDGIEVDQEIV 333
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ALG+A MTTA MA+CDHGV A+IKRV+M+RD YPRKWGLGP+ASMKK+LIA
Sbjct: 334 IVTTKGEAIALGVALMTTATMASCDHGVCAKIKRVIMERDLYPRKWGLGPKASMKKQLIA 393
Query: 408 EGKLDKHGKLNEKTPQEWA-----RNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRK 462
GKLDK GK N+KTP+EW N P G+ V AAE+ + E G KRK
Sbjct: 394 SGKLDKFGKPNDKTPKEWLTGYTDYNKAKPSNGNQV------AAEE---DDEVVG-GKRK 443
Query: 463 L------DASGDSPALNA 474
L D S D+ A++A
Sbjct: 444 LSIGSAADNSMDTSAIDA 461
>gi|170029441|ref|XP_001842601.1| H/ACA ribonucleoprotein complex subunit 4 [Culex quinquefasciatus]
gi|167862432|gb|EDS25815.1| H/ACA ribonucleoprotein complex subunit 4 [Culex quinquefasciatus]
Length = 521
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/438 (66%), Positives = 350/438 (79%), Gaps = 21/438 (4%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP ++TS+WP+LLKN+DRLNVRT HYTPLP G SPL R + DY+ G INL
Sbjct: 34 DFQIKPSEAIAKLETSKWPLLLKNFDRLNVRTNHYTPLPFGSSPLNRKIKDYVTSGFINL 93
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 94 DKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYV 153
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+YD R++
Sbjct: 154 AVFKLHSAVESVAKVNQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDDQRNMG 213
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAG+Y+RTMCVHLGL+ GVGG M ELRRVRSGI E D MVTMHDV+DAQ+LY+
Sbjct: 214 VFWVSCEAGSYIRTMCVHLGLVTGVGGQMLELRRVRSGIQSEKDGMVTMHDVLDAQYLYE 273
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE+ LRRVI PLE LL +KR+++KD++VNA+CYGAK+MIPG+LR+E+ IEV +E+V
Sbjct: 274 NHKDESMLRRVIKPLEGLLIGHKRIIMKDSSVNAVCYGAKIMIPGVLRYEDGIEVDQEIV 333
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ALG+A MTTA MA+CDHGV A+IKRV+M+RD YPRKWGLGP+ASMKK+LIA
Sbjct: 334 IVTTKGEAIALGVALMTTATMASCDHGVCAKIKRVIMERDLYPRKWGLGPKASMKKQLIA 393
Query: 408 EGKLDKHGKLNEKTPQEWA-----RNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRK 462
GKLDK GK N+KTP+EW N P G+ V AAE+ + E G KRK
Sbjct: 394 SGKLDKFGKPNDKTPKEWLTGYTDYNKAKPSNGNQV------AAEE---DDEVVG-GKRK 443
Query: 463 L------DASGDSPALNA 474
L D S D+ A++A
Sbjct: 444 LSIGSAADNSMDTSAIDA 461
>gi|403222102|dbj|BAM40234.1| centromere/microtubule binding protein [Theileria orientalis strain
Shintoku]
Length = 427
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/435 (65%), Positives = 346/435 (79%), Gaps = 14/435 (3%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
K F+IKP++ +P IDTS WP LLKNYD+LNVRTGHYTP+P+G SPL R L +Y++YG IN
Sbjct: 5 KQFLIKPEANSPPIDTSNWPFLLKNYDKLNVRTGHYTPMPHGSSPLCRDLSNYMKYGYIN 64
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKPANPSSHE+VAWIKRILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ GKEY
Sbjct: 65 LDKPANPSSHEIVAWIKRILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQNHGKEY 124
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V V + H AKV + L LTG +FQRPPLI+AVKRQLR+RTIYESKLL+Y+ + L
Sbjct: 125 VAVVKFHSPPESKAKVEKVLAELTGTLFQRPPLIAAVKRQLRVRTIYESKLLDYNAEEDL 184
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+ CEAGTYVRTMCVH+GL+LG G HMQELRRV+SG + E DNMVTMHDV+DAQ+LY
Sbjct: 185 ALFWVKCEAGTYVRTMCVHMGLLLGTGAHMQELRRVKSGNISEYDNMVTMHDVLDAQYLY 244
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
D+ DE+YLR V+ PLE LLT YKR+VVKD+ VNAICYGAKLMIPG+LRFEN+IE+ +E+
Sbjct: 245 DSTSDESYLRYVVSPLEQLLTGYKRVVVKDSCVNAICYGAKLMIPGVLRFENNIELHDEL 304
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ALGIA+MT+AV+AT DHGVVA IKRV+MDRDTYP +WG G R++ K++LI
Sbjct: 305 VMITTKGEAIALGIAQMTSAVIATVDHGVVAVIKRVIMDRDTYPMRWGYGNRSTEKRRLI 364
Query: 407 AEGKLDKHGKLNEKTPQEWARNVVLPP--GGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
+ G LDK GK+NE+TPQ W ++ P GDS A+ +A+E ETA
Sbjct: 365 SLGLLDKDGKVNERTPQSWTKSEGYLPKLTGDS--AAEGSASEDPKVNGETA-------- 414
Query: 465 ASGDSPALNAKKAKV 479
GDSP N KK K
Sbjct: 415 --GDSPEPNNKKRKF 427
>gi|390362447|ref|XP_003730156.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 1
[Strongylocentrotus purpuratus]
Length = 562
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 284/422 (67%), Positives = 353/422 (83%), Gaps = 6/422 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S ++T+ WP+LLKNYD+LN+RTGHYTPLPNG SPLKR + +Y+ G INL
Sbjct: 28 DFLIKPESAAAKLETAHWPLLLKNYDKLNIRTGHYTPLPNGCSPLKREIKEYVSSGFINL 87
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVV+W+K+ILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 88 DKPANPSSHEVVSWVKKILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYV 147
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD + + +K+A+A+E LTGA+FQRPPLISAVKRQLR+RTIYESKL+EYD RHL
Sbjct: 148 CIVRLHDAIENQSKLAKAIETLTGALFQRPPLISAVKRQLRVRTIYESKLIEYDPQRHLG 207
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGG M ELRRVRSGI E + +VTMHDV+DAQW++D
Sbjct: 208 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMAELRRVRSGIQSEKEALVTMHDVLDAQWVHD 267
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE YLRRVI P+E LLT +KR+V+KD++VN++CYGAK+M+PG+LRFE+ IE+ EVV
Sbjct: 268 NHKDEGYLRRVIKPMEALLTGHKRIVLKDSSVNSVCYGAKVMLPGVLRFEDGIEMNSEVV 327
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+ALGIA MTT+ MAT DHG+V ++KRV+M+RD YPRKWGLGP+ASMKK +I
Sbjct: 328 LMTTKGEAIALGIALMTTSTMATVDHGLVVKLKRVIMERDVYPRKWGLGPKASMKKTMIK 387
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
+GKLDKHGK N +TP++W + D V A E+ + ET VKKR+ ++S
Sbjct: 388 QGKLDKHGKANAETPKDWIKGY-----QDYSVKKEEAKPEEEKSAMETP-VKKRRRESST 441
Query: 468 DS 469
S
Sbjct: 442 SS 443
>gi|390362451|ref|XP_003730157.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 2
[Strongylocentrotus purpuratus]
Length = 562
Score = 600 bits (1546), Expect = e-168, Method: Compositional matrix adjust.
Identities = 272/381 (71%), Positives = 336/381 (88%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S ++T+ WP+LLKNYD+LN+RTGHYTPLPNG SPLKR + +Y+ G INL
Sbjct: 28 DFLIKPESAAAKLETAHWPLLLKNYDKLNIRTGHYTPLPNGCSPLKREIKEYVSSGFINL 87
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVV+W+K+ILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 88 DKPANPSSHEVVSWVKKILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYV 147
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD + + +K+A+A+E LTGA+FQRPPLISAVKRQLR+RTIYESKL+EYD RHL
Sbjct: 148 CIVRLHDAIENQSKLAKAIETLTGALFQRPPLISAVKRQLRVRTIYESKLIEYDPQRHLG 207
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGG M ELRRVRSGI E + +VTMHDV+DAQW++D
Sbjct: 208 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMAELRRVRSGIQSEKEALVTMHDVLDAQWVHD 267
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE YLRRVI P+E LLT +KR+V+KD++VN++CYGAK+M+PG+LRFE+ IE+ EVV
Sbjct: 268 NHKDEGYLRRVIKPMEALLTGHKRIVLKDSSVNSVCYGAKVMLPGVLRFEDGIEMNSEVV 327
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+ALGIA MTT+ MAT DHG+V ++KRV+M+RD YPRKWGLGP+ASMKK +I
Sbjct: 328 LMTTKGEAIALGIALMTTSTMATVDHGLVVKLKRVIMERDVYPRKWGLGPKASMKKTMIK 387
Query: 408 EGKLDKHGKLNEKTPQEWARN 428
+GKLDKHGK N +TP++W +
Sbjct: 388 QGKLDKHGKANAETPKDWIKG 408
>gi|321459377|gb|EFX70431.1| hypothetical protein DAPPUDRAFT_228342 [Daphnia pulex]
Length = 510
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 267/384 (69%), Positives = 328/384 (85%), Gaps = 1/384 (0%)
Query: 48 DFIIKP-QSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
DF+++P + +D SQWP+LLKN+D+LN RT HYTPLP+G SPLKRP+ DYI G IN
Sbjct: 28 DFVLEPSEKPIAKLDCSQWPLLLKNFDKLNTRTNHYTPLPSGCSPLKRPIKDYIHGGFIN 87
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 88 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 147
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + +LH V D ++ RALE LTGA+FQRPPLISAVKRQLR+RTIYE+K EYD +R++
Sbjct: 148 VAIFKLHSAVEDNNQIPRALEKLTGALFQRPPLISAVKRQLRVRTIYETKFYEYDAERNM 207
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
++W+SCEAGTYVRT CVHLGL+LGVG M ELRRVRSGI E + ++TMHDV+DAQWL+
Sbjct: 208 GIYWLSCEAGTYVRTHCVHLGLVLGVGAQMAELRRVRSGIQSEKEGLMTMHDVIDAQWLH 267
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN++DE YLRRVI PLE L+ S+KR+++KD+ VNA+CYGAK+M+PG+LR+EN IE+ EE+
Sbjct: 268 DNHKDETYLRRVIRPLEALMMSHKRIIMKDSAVNAVCYGAKIMLPGVLRYENGIELNEEI 327
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEAVAL IA MTT MA+CDHG+VA+IKRVVM+RDTYPRKWGLGP+AS+KK ++
Sbjct: 328 VIVTTKGEAVALAIALMTTTTMASCDHGIVAKIKRVVMERDTYPRKWGLGPKASIKKSMV 387
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
+G LDK GK N++TP++W + V
Sbjct: 388 KQGLLDKFGKPNDQTPKDWLTSYV 411
>gi|390362449|ref|XP_789483.3| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 isoform 3
[Strongylocentrotus purpuratus]
Length = 562
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 272/381 (71%), Positives = 336/381 (88%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S ++T+ WP+LLKNYD+LN+RTGHYTPLPNG SPLKR + +Y+ G INL
Sbjct: 28 DFLIKPESAAAKLETAHWPLLLKNYDKLNIRTGHYTPLPNGCSPLKREIKEYVSSGFINL 87
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVV+W+K+ILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 88 DKPANPSSHEVVSWVKKILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYV 147
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD + + +K+A+A+E LTGA+FQRPPLISAVKRQLR+RTIYESKL+EYD RHL
Sbjct: 148 CIVRLHDAIENQSKLAKAIETLTGALFQRPPLISAVKRQLRVRTIYESKLIEYDPQRHLG 207
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGG M ELRRVRSGI E + +VTMHDV+DAQW++D
Sbjct: 208 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMAELRRVRSGIQSEKEALVTMHDVLDAQWVHD 267
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE YLRRVI P+E LLT +KR+V+KD++VN++CYGAK+M+PG+LRFE+ IE+ EVV
Sbjct: 268 NHKDEGYLRRVIKPMEALLTGHKRIVLKDSSVNSVCYGAKVMLPGVLRFEDGIEMNSEVV 327
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+ALGIA MTT+ MAT DHG+V ++KRV+M+RD YPRKWGLGP+ASMKK +I
Sbjct: 328 LMTTKGEAIALGIALMTTSTMATVDHGLVVKLKRVIMERDVYPRKWGLGPKASMKKTMIK 387
Query: 408 EGKLDKHGKLNEKTPQEWARN 428
+GKLDKHGK N +TP++W +
Sbjct: 388 QGKLDKHGKANAETPKDWIKG 408
>gi|302695777|ref|XP_003037567.1| hypothetical protein SCHCODRAFT_255708 [Schizophyllum commune H4-8]
gi|300111264|gb|EFJ02665.1| hypothetical protein SCHCODRAFT_255708 [Schizophyllum commune H4-8]
Length = 513
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 284/384 (73%), Positives = 336/384 (87%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ P +DTSQWP+LLKNYD+L VR+ H+TP+P G SPLKR + YI+ G+INL
Sbjct: 17 DYKIKPENAQPKLDTSQWPLLLKNYDKLLVRSSHFTPIPAGCSPLKRDITTYIKSGVINL 76
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 77 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 136
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH+ +PD A + RAL+ LTGA+FQRPPLISAVKRQLRIRTIYESKL E+D R+L
Sbjct: 137 CVLRLHNSLPDPAALPRALQTLTGALFQRPPLISAVKRQLRIRTIYESKLFEFDEKRNLA 196
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + END +VTMHDV+DAQW+YD
Sbjct: 197 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSENDEIVTMHDVLDAQWMYD 256
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI + EEVV
Sbjct: 257 NTRDESYLRRVIRPLECLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADINLNEEVV 316
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+GIA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP A KKK++
Sbjct: 317 LMTTKGEAIAIGIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPVALKKKKMVK 376
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV 430
EG+L KHG KL TPQEW+++ V
Sbjct: 377 EGQLGKHGEKLPGVTPQEWSKDYV 400
>gi|238815023|gb|ACR56708.1| dyskeratosis congenita 1 [Ovis aries]
Length = 506
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/427 (66%), Positives = 352/427 (82%), Gaps = 1/427 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+DF+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEDFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V A A VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTDSTPTTWTQEYFDYSNSAKKDVPPKAVKAAPVVAEVVKTPKRKRESE 452
Query: 465 ASGDSPA 471
+ SPA
Sbjct: 453 SEDASPA 459
>gi|8572671|gb|AAF77119.1|AF234319_1 Cbf5p [Euglena gracilis]
Length = 467
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 274/380 (72%), Positives = 324/380 (85%), Gaps = 2/380 (0%)
Query: 48 DFIIKPQSF--TPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
DF I +S ++D+S+WP+LLKNYD+LNVR+ HYTP+P G++PLKRP+ Y++YG +
Sbjct: 9 DFSIPTESGEKGAALDSSEWPLLLKNYDKLNVRSAHYTPIPQGHTPLKRPIKAYLQYGCL 68
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVV+W+KRIL+VEKTGH+GTLDPKVTG+L++CI+RATRLVKSQQ AGKE
Sbjct: 69 NLDKPSNPSSHEVVSWLKRILKVEKTGHAGTLDPKVTGSLLICIERATRLVKSQQNAGKE 128
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV V RLHD + D A++ +ALE LTGAVFQRPP+++AVKR LRIRTIYESKLL++D DRH
Sbjct: 129 YVGVLRLHDALKDEAQLLKALEDLTGAVFQRPPVVAAVKRTLRIRTIYESKLLDFDNDRH 188
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFWISCEAGTYVRT+CVHLG +LG GHM ELRR R+G LGEND MVTMHDV+DA L
Sbjct: 189 LAVFWISCEAGTYVRTLCVHLGFVLGTAGHMAELRRTRTGHLGENDGMVTMHDVLDAMHL 248
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD DE+YLRR +MP E+LLT+YKR+VVKDT VNAICYGAKLMIPGLLRFEN IEV E
Sbjct: 249 YDQEGDESYLRRTVMPCELLLTAYKRVVVKDTAVNAICYGAKLMIPGLLRFENGIEVNEV 308
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+VLMTTKGEA+ALGIA MTTA M TCDHG+VA+IKRVVMDRDTYPR+WGLGP A KK++
Sbjct: 309 IVLMTTKGEAIALGIALMTTADMGTCDHGIVAKIKRVVMDRDTYPRRWGLGPVALKKKEM 368
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
I G LDKHG+ E TP W
Sbjct: 369 IERGHLDKHGRRTEATPNSW 388
>gi|71534070|gb|AAH99966.1| Dkc1 protein [Mus musculus]
Length = 509
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/447 (65%), Positives = 361/447 (80%), Gaps = 15/447 (3%)
Query: 24 KNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYT 83
+ D D A+ A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYT
Sbjct: 23 QED------DVAEIQH------AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYT 70
Query: 84 PLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG 143
PLP G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG
Sbjct: 71 PLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTG 130
Query: 144 NLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
LIVCI+RATRLVKSQQ AGKEYV V RLH+ + +++RALE LTGA+FQRPPLI+AV
Sbjct: 131 CLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAV 190
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 263
KRQLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVR
Sbjct: 191 KRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVR 250
Query: 264 SGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAIC 323
SG++ E D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAIC
Sbjct: 251 SGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAIC 310
Query: 324 YGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
YGAK+M+PGLLR+E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+
Sbjct: 311 YGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVI 370
Query: 384 MDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASL 442
M+RDTYPRKWGLGP+AS KK +I +G LDKHGK + TP W ++ + G + + +
Sbjct: 371 MERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTE 430
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDS 469
A A Q A E V KRK D+ +S
Sbjct: 431 AVQAPQLAA--EAVNVIKRKRDSESES 455
>gi|395334191|gb|EJF66567.1| putative rRNA pseudouridine synthase [Dichomitus squalens LYAD-421
SS1]
Length = 518
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/415 (70%), Positives = 347/415 (83%), Gaps = 5/415 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP+S P +DTS WP+LLKNYD+L VR+ H+ P+ G SPLKR + Y++ G+INL
Sbjct: 20 DYAIKPESSQPKLDTSNWPLLLKNYDKLLVRSAHFVPIIAGCSPLKRDITSYVKSGVINL 79
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 80 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 139
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V R+H +P+ + RA++ LTGA+FQRPPLISAVKRQLRIRTIYESKLLE+D R+L
Sbjct: 140 AVLRIHSALPNPTALPRAIQTLTGALFQRPPLISAVKRQLRIRTIYESKLLEFDEKRNLA 199
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L END+MVTMHDV+DAQW+YD
Sbjct: 200 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALSENDDMVTMHDVLDAQWVYD 259
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LLT YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI + EEVV
Sbjct: 260 NTRDESYLRRVIRPLESLLTGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADISLNEEVV 319
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP+A KKK+I
Sbjct: 320 LMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPKAVEKKKMIK 379
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQT---VAEKETAGVK 459
EGKL K+G++NEKTP EW ++ V +AS +AA QT E E A V+
Sbjct: 380 EGKLSKYGEVNEKTPAEWTKDYV--DYNREPIASTSAAHAQTAPVAPEPEPAAVE 432
>gi|348552726|ref|XP_003462178.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cavia
porcellus]
Length = 513
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 274/385 (71%), Positives = 338/385 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
I +G LDKHGK + TP W + +
Sbjct: 393 IKQGLLDKHGKPTDSTPAAWKQEYI 417
>gi|440902919|gb|ELR53649.1| H/ACA ribonucleoprotein complex subunit 4, partial [Bos grunniens
mutus]
Length = 501
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/427 (66%), Positives = 353/427 (82%), Gaps = 1/427 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 28 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 87
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 88 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 147
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 148 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 207
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 208 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 267
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 268 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 327
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 328 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 387
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V V A A VAE +KR+ +
Sbjct: 388 IKQGLLDKHGKPTDSTPATWMQEYVDYSNSAKKDVPPKAVKATPVVAEVVKTPKRKRESE 447
Query: 465 ASGDSPA 471
+ SPA
Sbjct: 448 SEDTSPA 454
>gi|157427916|ref|NP_001098865.1| H/ACA ribonucleoprotein complex subunit 4 [Bos taurus]
gi|157278927|gb|AAI34582.1| DKC1 protein [Bos taurus]
gi|296471114|tpg|DAA13229.1| TPA: dyskerin [Bos taurus]
Length = 506
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/427 (66%), Positives = 353/427 (82%), Gaps = 1/427 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V V A A VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTDSTPATWMQEYVDYSNSAKKDVPPKAVKATPVVAEVVKTPKRKRESE 452
Query: 465 ASGDSPA 471
+ SPA
Sbjct: 453 SEDTSPA 459
>gi|91064867|ref|NP_001025478.1| H/ACA ribonucleoprotein complex subunit 4 [Mus musculus]
gi|341940643|sp|Q9ESX5.4|DKC1_MOUSE RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Dyskerin; AltName: Full=Nopp140-associated protein
of 57 kDa; AltName: Full=Nucleolar protein NAP57;
AltName: Full=Nucleolar protein family A member 4;
AltName: Full=snoRNP protein DKC1
gi|74201907|dbj|BAE22970.1| unnamed protein product [Mus musculus]
Length = 509
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/447 (64%), Positives = 361/447 (80%), Gaps = 15/447 (3%)
Query: 24 KNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYT 83
+ D D A+ A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYT
Sbjct: 23 QED------DVAEIQH------AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYT 70
Query: 84 PLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG 143
PLP G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG
Sbjct: 71 PLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTG 130
Query: 144 NLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
LIVCI+RATRLVKSQQ AGKEYV + RLH+ + +++RALE LTGA+FQRPPLI+AV
Sbjct: 131 CLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAV 190
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 263
KRQLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVR
Sbjct: 191 KRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVR 250
Query: 264 SGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAIC 323
SG++ E D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAIC
Sbjct: 251 SGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAIC 310
Query: 324 YGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
YGAK+M+PGLLR+E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+
Sbjct: 311 YGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVI 370
Query: 384 MDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASL 442
M+RDTYPRKWGLGP+AS KK +I +G LDKHGK + TP W ++ + G + + +
Sbjct: 371 MERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTE 430
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDS 469
A A Q A E V KRK D+ +S
Sbjct: 431 AVQAPQLAA--EAVNVIKRKRDSESES 455
>gi|66812658|ref|XP_640508.1| pseudouridine synthase family protein [Dictyostelium discoideum
AX4]
gi|74855240|sp|Q54T81.1|DKC1_DICDI RecName: Full=Probable H/ACA ribonucleoprotein complex subunit 4
gi|60468522|gb|EAL66526.1| pseudouridine synthase family protein [Dictyostelium discoideum
AX4]
Length = 540
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 268/377 (71%), Positives = 330/377 (87%), Gaps = 1/377 (0%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKP+ TP +DTS+WP+LLKNYD+L+VRTGHYTP+PNG+SPLKRP+ +Y++YGIINLDK
Sbjct: 22 VIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHYTPIPNGHSPLKRPIKEYVKYGIINLDK 80
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGKEY+ +
Sbjct: 81 PSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGI 140
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLH + ++++A++ LTGA+FQRPP SAVK++LR+RTI+ SKLLE+D +R+L +
Sbjct: 141 VRLHGAIEGTTELSKAVDTLTGALFQRPPQKSAVKKRLRVRTIHNSKLLEFDPERNLGLI 200
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+ CEAGTY+RT+CVH+GL++GVGGHMQELRRVRSGI+ E VTMHDV DAQ+ YDN
Sbjct: 201 WVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVTMHDVKDAQYEYDNS 260
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+DE+YLRRVI PLE +LT+YKR+VVKD+ +NAICYGAKLMIPGLLR+E DIE EEVVL+
Sbjct: 261 KDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEVVLI 320
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+GIA+MTTA MATCDHGVVA IKRV+MDRD YP +WGLGP+A +KK++I +G
Sbjct: 321 TTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMIKDG 380
Query: 410 KLDKHGKLNEKTPQEWA 426
KLDK GK NEKTP +W
Sbjct: 381 KLDKFGKPNEKTPSDWT 397
>gi|215983076|ref|NP_001135985.1| H/ACA ribonucleoprotein complex subunit 4 [Ovis aries]
gi|213688835|gb|ACJ53933.1| dyskeratosis congenita 1 [Ovis aries]
Length = 506
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 285/427 (66%), Positives = 352/427 (82%), Gaps = 1/427 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+DF+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEDFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+I+RV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIRRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V A A VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTDSTPTTWTQEYFDYSNSAKKDVPPKAVKAAPVVAEVVKTPKRKRESE 452
Query: 465 ASGDSPA 471
+ SPA
Sbjct: 453 SEDASPA 459
>gi|443896590|dbj|GAC73934.1| pseudouridine synthase [Pseudozyma antarctica T-34]
Length = 497
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/403 (71%), Positives = 345/403 (85%), Gaps = 5/403 (1%)
Query: 29 ALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNG 88
AL T+ A A + DF+IKP++ P ++T+ WP+LLKNYD+L VR+ H+TP+P+G
Sbjct: 2 ALPLGTSVAQAQEQG----DFMIKPENSGPKLNTADWPLLLKNYDQLLVRSSHFTPIPHG 57
Query: 89 YSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVC 148
SPLKR L Y++ G+INLDKP+NPSSHEVV+W++RILRVEKTGHSGTLDPKVTG LIVC
Sbjct: 58 CSPLKRDLQSYVKSGVINLDKPSNPSSHEVVSWLRRILRVEKTGHSGTLDPKVTGCLIVC 117
Query: 149 IDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLR 208
IDRATRLVKSQQGAGKEYV V RLHDK+ D K+ RA+E LTG++FQRPPLISAVKRQLR
Sbjct: 118 IDRATRLVKSQQGAGKEYVAVLRLHDKLEDPKKLPRAIETLTGSLFQRPPLISAVKRQLR 177
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
IRTIYESKL+E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L
Sbjct: 178 IRTIYESKLIEFDNDRHLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALS 237
Query: 269 ENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
END++VTMHDV+DAQWLYDN RDE YLRRVI PLE LLT YKR+VVKD+ VNA+CYGAKL
Sbjct: 238 ENDSIVTMHDVLDAQWLYDNQRDETYLRRVIRPLESLLTGYKRIVVKDSAVNAVCYGAKL 297
Query: 329 MIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388
MIPGLLR+E DIEV EEVVLMTTKGEA+AL +A+M+T ++TCDHGVVA++KR +M+RDT
Sbjct: 298 MIPGLLRYEKDIEVHEEVVLMTTKGEAIALAVAQMSTVDLSTCDHGVVAKVKRCIMERDT 357
Query: 389 YPRKWGLGPRASMKKKLIAEGKLDKHGK-LNEKTPQEWARNVV 430
YPR+WGLGP+A KK +I GKLDKHGK +N TP +W ++ V
Sbjct: 358 YPRRWGLGPKAQEKKAMIKTGKLDKHGKAINGVTPDKWQKDYV 400
>gi|393218369|gb|EJD03857.1| putative rRNA pseudouridine synthase [Fomitiporia mediterranea
MF3/22]
Length = 525
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 285/384 (74%), Positives = 337/384 (87%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IK + TP +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR + YI+ G+INL
Sbjct: 18 DYSIKSEESTPKLDTSQWPLLLKNYDKLLVRSSHFTPIPHGCSPLKRDIQSYIKSGVINL 77
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 78 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 137
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH + + + + RAL+ LTGA+FQRPPLISAVKRQLR+RTIYESKLLE+D R+L
Sbjct: 138 CVLRLHAGLENPSALPRALQTLTGALFQRPPLISAVKRQLRVRTIYESKLLEFDEKRNLA 197
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + END++VTMHDVMDAQW+YD
Sbjct: 198 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTMHDVMDAQWMYD 257
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+ENDI + EEVV
Sbjct: 258 NTRDESYLRRVIRPLECLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYENDIALNEEVV 317
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+ALGIA+MTT +ATCDHGVVA++KR +M+RDTYPR+WGLGP+A KKK+I
Sbjct: 318 LMTTKGEAIALGIAQMTTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPKAMEKKKMIK 377
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV 430
EGKL KHG K+ TP EW+++ V
Sbjct: 378 EGKLGKHGEKIEGVTPAEWSKDYV 401
>gi|217916954|gb|ACK44288.2| dyskerin (predicted) [Oryctolagus cuniculus]
Length = 440
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 282/408 (69%), Positives = 347/408 (85%), Gaps = 1/408 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 27 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 86
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 87 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 146
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 147 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 206
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 207 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 266
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 267 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 326
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 327 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLM 386
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAE 452
I +G LDKHGK + TP W + V G V + A A Q VAE
Sbjct: 387 IKQGLLDKHGKPTDSTPPSWKQEYVDYSDSGKKEVVAEAVQAPQIVAE 434
>gi|4503337|ref|NP_001354.1| H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Homo sapiens]
gi|426398017|ref|XP_004065199.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Gorilla
gorilla gorilla]
gi|3913488|sp|O60832.3|DKC1_HUMAN RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=CBF5 homolog; AltName: Full=Dyskerin; AltName:
Full=Nopp140-associated protein of 57 kDa; AltName:
Full=Nucleolar protein NAP57; AltName: Full=Nucleolar
protein family A member 4; AltName: Full=snoRNP protein
DKC1
gi|3135028|emb|CAA11970.1| dyskerin [Homo sapiens]
gi|3873221|gb|AAD11815.1| dyskerin [Homo sapiens]
gi|4416165|gb|AAD20232.1| dyskerin [Homo sapiens]
gi|14603090|gb|AAH10015.1| Dyskeratosis congenita 1, dyskerin [Homo sapiens]
gi|117644412|emb|CAL37701.1| hypothetical protein [synthetic construct]
gi|117646788|emb|CAL37509.1| hypothetical protein [synthetic construct]
gi|119593068|gb|EAW72662.1| dyskeratosis congenita 1, dyskerin, isoform CRA_b [Homo sapiens]
gi|306921545|dbj|BAJ17852.1| dyskeratosis congenita 1, dyskerin [synthetic construct]
gi|410221700|gb|JAA08069.1| dyskeratosis congenita 1, dyskerin [Pan troglodytes]
gi|410256254|gb|JAA16094.1| dyskeratosis congenita 1, dyskerin [Pan troglodytes]
gi|410308136|gb|JAA32668.1| dyskeratosis congenita 1, dyskerin [Pan troglodytes]
gi|410330037|gb|JAA33965.1| dyskeratosis congenita 1, dyskerin [Pan troglodytes]
Length = 514
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 283/424 (66%), Positives = 351/424 (82%), Gaps = 1/424 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V V + A Q VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAEAAKTAKRKRESE 452
Query: 465 ASGD 468
+ D
Sbjct: 453 SESD 456
>gi|355757840|gb|EHH61365.1| hypothetical protein EGM_19364, partial [Macaca fascicularis]
Length = 503
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 284/424 (66%), Positives = 351/424 (82%), Gaps = 1/424 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 28 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 87
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 88 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 147
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 148 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 207
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 208 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 267
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 268 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 327
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 328 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 387
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDK+GK E TP W + V V + A Q VAE +KR+ D
Sbjct: 388 IKQGLLDKYGKPTESTPATWKQEYVDYSETAKKEVVAEVVKAPQVVAEAAKTAKRKRESD 447
Query: 465 ASGD 468
+ D
Sbjct: 448 SESD 451
>gi|332260599|ref|XP_003279372.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Nomascus
leucogenys]
Length = 514
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/425 (67%), Positives = 352/425 (82%), Gaps = 3/425 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V V + A Q VA E A KRK D
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVA--EAAKTAKRKRD 450
Query: 465 ASGDS 469
+ +S
Sbjct: 451 SESES 455
>gi|410989737|ref|XP_004001115.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Felis catus]
Length = 645
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 285/410 (69%), Positives = 349/410 (85%), Gaps = 5/410 (1%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 161 AEEFLIKPESKAAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 220
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 221 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 280
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 281 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 340
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 341 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 400
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 401 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 460
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 461 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 520
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSV---VASLAAAAEQTVAE 452
I +G LDKHGK + TP W + V DS VA+ AA A Q V E
Sbjct: 521 IKQGLLDKHGKPTDSTPVAWTQEYV--DYSDSAKREVAAKAAKAPQEVVE 568
>gi|2737894|gb|AAB94299.1| Cbf5p homolog [Homo sapiens]
Length = 514
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 283/424 (66%), Positives = 350/424 (82%), Gaps = 1/424 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFFIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V V + A Q VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAEAAKTAKRKRESE 452
Query: 465 ASGD 468
+ D
Sbjct: 453 SESD 456
>gi|388855280|emb|CCF51174.1| probable CBF5-Centromere Binding Factor / putative rRNA
pseuduridine synthase [Ustilago hordei]
Length = 493
Score = 596 bits (1537), Expect = e-167, Method: Compositional matrix adjust.
Identities = 296/433 (68%), Positives = 359/433 (82%), Gaps = 11/433 (2%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP++ P ++T+ WP+LLKNYD+L VR+ H+TP+P+G SPLKR L YI+ G+INL
Sbjct: 17 DFMIKPENTGPKLNTADWPLLLKNYDQLLVRSSHFTPIPHGCSPLKRDLQSYIKSGVINL 76
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVV+W++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 77 DKPSNPSSHEVVSWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 136
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLH+K+ D K+ RA+E LTG++FQRPPLISAVKRQLR+RTIYESKL+E+D DRHL
Sbjct: 137 AVLRLHEKLEDPKKLPRAIETLTGSLFQRPPLISAVKRQLRVRTIYESKLIEFDNDRHLA 196
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L END++VTMHDV+DAQWLYD
Sbjct: 197 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALSENDSVVTMHDVLDAQWLYD 256
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LLT YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DIE EEVV
Sbjct: 257 NQRDESYLRRVIRPLESLLTGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEKDIETHEEVV 316
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+M+T ++TCDHGVVA++KR +M+RDTYPR+WGLGP+A KK +I
Sbjct: 317 LMTTKGEAIALAIAQMSTVDLSTCDHGVVAKVKRCIMERDTYPRRWGLGPKAQEKKAMIK 376
Query: 408 EGKLDKHGK-LNEKTPQEWARNVVLPPGGDSVVASLA--------AAAEQTVAEKETAGV 458
GKLDKHGK +N TP +W + V GD+ A+++ A +KE +
Sbjct: 377 TGKLDKHGKAINGVTPDKWKKEYV-DYSGDAAPAAVSDVEQVAAAAVVAPVTPKKEDSDS 435
Query: 459 KKRKLDAS-GDSP 470
KKRKL+ + G +P
Sbjct: 436 KKRKLEETPGAAP 448
>gi|346974692|gb|EGY18144.1| centromere/microtubule-binding protein cbf5 [Verticillium dahliae
VdLs.17]
Length = 484
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/393 (70%), Positives = 330/393 (83%), Gaps = 20/393 (5%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDR-------------LNVRTGHYTPLPNGYSPLK 93
+++ IKPQ+ TP +DTS WP+LLKNYD+ L VRTGH+TP+P G SPLK
Sbjct: 10 EEYSIKPQAATPQLDTSSWPLLLKNYDKRKFSPSRDTIELHLLVRTGHFTPIPAGCSPLK 69
Query: 94 RPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRAT 153
R + YI G+INLDKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIV
Sbjct: 70 RDIKSYISSGVINLDKPSNPSSHEVVAWLKRMLRVEKTGHSGTLDPKVTGCLIVW----- 124
Query: 154 RLVKSQQGAGKEYVCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
LVKSQQGAGKEYVCV RLHDK+P + ARALE LTGA+FQRPPLISAVKRQLRIRTI
Sbjct: 125 -LVKSQQGAGKEYVCVIRLHDKLPGGQVQFARALETLTGALFQRPPLISAVKRQLRIRTI 183
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
+ESK++E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN
Sbjct: 184 HESKVIEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENKG 243
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+HDV+DAQW DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKLM+PG
Sbjct: 244 LVTLHDVLDAQWTMDNTRDESYLRRVISPLETLLTSYKRVVVKDSAVNAVCYGAKLMLPG 303
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
LLR+E++IEV +EVV+MTTKGEA+ALGIA+M+T M+TCDHGVVA+IKR +M+RD YPRK
Sbjct: 304 LLRYESEIEVHDEVVMMTTKGEAIALGIAQMSTVEMSTCDHGVVAKIKRCIMERDLYPRK 363
Query: 393 WGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEW 425
WGLGP+AS KKK+ A+GKLDK+G+ NE TP +W
Sbjct: 364 WGLGPQASEKKKMKADGKLDKYGRPNEATPAKW 396
>gi|336266744|ref|XP_003348139.1| hypothetical protein SMAC_03984 [Sordaria macrospora k-hell]
gi|380091075|emb|CCC11281.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 478
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/383 (71%), Positives = 324/383 (84%), Gaps = 2/383 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A + +IKPQ+ P++DTS+WP+LLKNY L VRTGH+TP+P G SP KR + Y+ G+I
Sbjct: 2 ATEHVIKPQATEPAVDTSEWPLLLKNYSNLLVRTGHFTPIPAGSSPSKRDIKSYVSSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTG LIVC+DRATRLVK+QQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRMLRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKE 121
Query: 166 YVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
YVCV R HD VP A A ALE LTGA+FQRPPLISAVKRQLRIR+IYESKL+E+D DR
Sbjct: 122 YVCVIRFHDSVPGGEAAFASALETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNDR 181
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE-NDNMVTMHDVMDAQ 283
HL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSGI+ E N +MVT+HDV+DAQ
Sbjct: 182 HLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGIMSEDNGSMVTLHDVLDAQ 241
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
W +DN DE LR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLM+PGLLRFE IE
Sbjct: 242 WQFDNGGDETALRKVIQPLETLLTTYKRIVVKDSAVNAVCYGAKLMLPGLLRFEKGIETH 301
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
EEVVLMTTKGEA+A+GIA+M M +CDHGVVA++KR +M+RD YPR+WGLGP A KK
Sbjct: 302 EEVVLMTTKGEAIAIGIAQMNGVEMLSCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKK 361
Query: 404 KLIAEGKLDKHGKLNEKTPQEWA 426
KL ++GKLDK G+ N +TP +W+
Sbjct: 362 KLKSDGKLDKFGRPNAETPAKWS 384
>gi|46125657|ref|XP_387382.1| hypothetical protein FG07206.1 [Gibberella zeae PH-1]
Length = 486
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/384 (75%), Positives = 338/384 (88%), Gaps = 1/384 (0%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
AT +++IIKPQ+ TP++DTSQWP+LLKNY++L RTGH+TP+PNG SPLKR L YI G
Sbjct: 11 ATEEEYIIKPQAHTPTLDTSQWPLLLKNYEKLLTRTGHFTPIPNGCSPLKRDLKQYISSG 70
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAG
Sbjct: 71 VINLDKPSNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 130
Query: 164 KEYVCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYV V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D
Sbjct: 131 KEYVAVIRLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDN 190
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
DRHL VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E+ +VT+HDV+DA
Sbjct: 191 DRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDESKGLVTLHDVLDA 250
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
QW DN RDE+YLR+VI PLE LLTSYKRLVVKD+ VNA+CYGAKLM+PGLLR+E IE
Sbjct: 251 QWQMDNTRDESYLRKVISPLETLLTSYKRLVVKDSAVNAVCYGAKLMLPGLLRYEAAIEH 310
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
EEVVLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A K
Sbjct: 311 HEEVVLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEK 370
Query: 403 KKLIAEGKLDKHGKLNEKTPQEWA 426
KKL A+GKLDK+G+ N+ TP +W+
Sbjct: 371 KKLKADGKLDKYGRPNDATPAKWS 394
>gi|403306934|ref|XP_003943972.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Saimiri
boliviensis boliviensis]
Length = 515
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 284/425 (66%), Positives = 352/425 (82%), Gaps = 5/425 (1%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G IN
Sbjct: 34 EEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFIN 93
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 154 VGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 213
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWLY
Sbjct: 214 GIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLY 273
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+
Sbjct: 274 DNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEI 333
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 334 VVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMI 393
Query: 407 AEGKLDKHGKLNEKTPQEWARNVVLPPGGDSV---VASLAAAAEQTVAEKETAGVKKRKL 463
+G LDKHGK + TP W + V DS V + A Q VAE +KR+
Sbjct: 394 KQGLLDKHGKPTDSTPATWKQEYV--DYSDSAKKEVVAEVVKAPQVVAEAAKTAKRKRES 451
Query: 464 DASGD 468
++ D
Sbjct: 452 ESESD 456
>gi|217416474|ref|NP_001136140.1| H/ACA ribonucleoprotein complex subunit 4 [Sus scrofa]
gi|213688833|gb|ACJ53932.1| dyskeratosis congenita 1 [Sus scrofa]
Length = 522
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 284/438 (64%), Positives = 356/438 (81%), Gaps = 12/438 (2%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 34 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFI 93
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 94 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 153
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RT+YESK++E+D +R
Sbjct: 154 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTVYESKMIEFDPERR 213
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 214 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 273
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 274 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 333
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 334 IVVITTKGEAICMAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKRLM 393
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV------------LPPGGDSVVASLAAAAEQTVAEK 453
I +G LDKHGK + TP W ++ V + AA A Q VAE
Sbjct: 394 IKQGLLDKHGKPTDSTPAAWTQDYVDYSDPAKKEAAAAKAVKAPPAVAEAAKAPQLVAEA 453
Query: 454 ETAGVKKRKLDASGDSPA 471
+KR+ ++ SPA
Sbjct: 454 AKTPKRKRESESDETSPA 471
>gi|443722429|gb|ELU11298.1| hypothetical protein CAPTEDRAFT_226101 [Capitella teleta]
Length = 507
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/438 (64%), Positives = 356/438 (81%), Gaps = 12/438 (2%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
++ F+I+P ++TSQWP+LLKN+D+LNVR+ HYTP+P G SPLKRP+ DYI G I
Sbjct: 27 SESFMIQPSEKVQKLETSQWPLLLKNFDKLNVRSSHYTPIPAGCSPLKRPIKDYITTGFI 86
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCID+ATRLVKSQQ AGKE
Sbjct: 87 NLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDKATRLVKSQQSAGKE 146
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLH V DV K+ A+E L GA+FQRPPLISAVKRQLR+RTIYESK+LEYD +++
Sbjct: 147 YVCIFRLHSAVEDVKKIYSAVETLQGALFQRPPLISAVKRQLRVRTIYESKMLEYDENKN 206
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ W+SC+AGTY+RT+CVHLGL+LGVGG MQELRRVRSG+L E D M TMHDVMDAQWL
Sbjct: 207 QGIVWVSCQAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVLSEKDAMSTMHDVMDAQWL 266
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD+++DEAYLRRVI PLE LL S+KR+++KD+ +NA+CYGAK+M+PG+LR+++ IE+ +E
Sbjct: 267 YDHHQDEAYLRRVISPLEALLVSHKRIIMKDSAINAVCYGAKVMLPGVLRYDDGIEIDDE 326
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEAVA+ +A+MT+AV+ATCDHG VA++KRV+M+RDTYPRKWGLGP AS KK++
Sbjct: 327 IVIVTTKGEAVAIAVAQMTSAVIATCDHGQVAKLKRVIMERDTYPRKWGLGPVASRKKQM 386
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
I +GKLDK+G+ NE TP +W S A A V E+ET+ +KR+ +
Sbjct: 387 IKDGKLDKYGRKNESTPSDWL----------SAYTDYKAQAANGVKEEETSAKRKRESSS 436
Query: 466 SGDS--PALNAKKAKVEE 481
++ PA KAKV++
Sbjct: 437 EDETAAPATPKIKAKVKQ 454
>gi|327277364|ref|XP_003223435.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Anolis
carolinensis]
Length = 579
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 273/385 (70%), Positives = 335/385 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+++F+IKPQS +DTSQWP+LLKN+D+LNVRT HYTPLP+G +PLKR + +YI+ G I
Sbjct: 95 SEEFLIKPQSRVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPSGCNPLKREITEYIKTGFI 154
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 155 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 214
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RA+E LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R
Sbjct: 215 YVGIVRLHNAIESETQLSRAIETLTGALFQRPPLIAAVKRQLRVRTIYESKLVEYDPERR 274
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++GE D+MVTMHDV+DAQW
Sbjct: 275 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMGEKDHMVTMHDVLDAQWQ 334
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD+ +DE YLRRVI PLE LL S+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IE+ ++
Sbjct: 335 YDHNKDETYLRRVIYPLEKLLISHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEINQD 394
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 395 IVVITTKGEAICTAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMM 454
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
I EG LD HGK N TPQ W + V
Sbjct: 455 IKEGLLDAHGKPNSNTPQSWKKEYV 479
>gi|14602859|gb|AAH09928.1| Dyskeratosis congenita 1, dyskerin [Homo sapiens]
gi|123984635|gb|ABM83663.1| dyskeratosis congenita 1, dyskerin [synthetic construct]
gi|123998617|gb|ABM86910.1| dyskeratosis congenita 1, dyskerin [synthetic construct]
Length = 514
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/424 (66%), Positives = 350/424 (82%), Gaps = 1/424 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRR + PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRFVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V V + A Q VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAEAAKTAKRKRESE 452
Query: 465 ASGD 468
+ D
Sbjct: 453 SESD 456
>gi|392597270|gb|EIW86592.1| putative rRNA pseudouridine synthase [Coniophora puteana RWD-64-598
SS2]
Length = 526
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/384 (72%), Positives = 332/384 (86%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP+ P +DTSQWP+LLKNYD+L VR+ H+TP+ +G SPL+R L Y++ G+INL
Sbjct: 19 DYAIKPEDVQPKLDTSQWPLLLKNYDKLLVRSSHFTPISSGNSPLRRDLQSYVKSGVINL 78
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 79 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 138
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH +PD + R+L+ L+GA+FQRPPLISAVKRQLRIRTIYESKLLE+D R+L
Sbjct: 139 CVLRLHSSLPDPTALPRSLQTLSGALFQRPPLISAVKRQLRIRTIYESKLLEFDEKRNLA 198
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + END++VTMHDV+DAQW YD
Sbjct: 199 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTMHDVLDAQWTYD 258
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI V +EVV
Sbjct: 259 NTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADISVNDEVV 318
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+MTT +ATCDHGVVA++KR +M+RDTYPR+WGLGP A KKK++
Sbjct: 319 LMTTKGEAIALAIAQMTTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPMAIQKKKMVK 378
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV 430
+GKL KHG K+ TP EW+R+ V
Sbjct: 379 DGKLGKHGEKIEGVTPAEWSRDYV 402
>gi|401885502|gb|EJT49616.1| centromere/microtubule binding protein cbf5 [Trichosporon asahii
var. asahii CBS 2479]
Length = 550
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/371 (75%), Positives = 321/371 (86%), Gaps = 3/371 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IK ++ TP +DTS+WP+LLKNYD+L VR+ H+TP+P G SPLKR L YI G INL
Sbjct: 12 DFAIKSEAVTPKLDTSEWPLLLKNYDKLLVRSSHFTPIPTGCSPLKRDLKTYIESGCINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILRV+KTGHSGTLDP VTG LIVCIDRATRLVKSQQGAGK YV
Sbjct: 72 DKPSNPSSHEVVAWIKRILRVQKTGHSGTLDPLVTGCLIVCIDRATRLVKSQQGAGKSYV 131
Query: 168 CVARLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
VARLH K P+ K V RA+E LTGA+FQRPPLISAVKRQLR+RTIY SKL+EYD DR
Sbjct: 132 VVARLHGK-PEGGKQAVERAMETLTGALFQRPPLISAVKRQLRVRTIYNSKLIEYDEDRG 190
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
LVV + CEAGTYVRT VHLGL+LGVG HMQELRRVRSGI GE D++VTMHDV+DAQWL
Sbjct: 191 LVVAQLDCEAGTYVRTWSVHLGLLLGVGAHMQELRRVRSGITGEGDDIVTMHDVLDAQWL 250
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DIEVGEE
Sbjct: 251 YDNTRDESYLRRVIKPLEALLTNYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADIEVGEE 310
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+M+TA +A+CDHGVVA++KR +M+RD YPR+WGLGP+A KKK+
Sbjct: 311 VVLMTTKGEAIAVGIAQMSTADLASCDHGVVAKVKRCIMNRDLYPRRWGLGPKAQEKKKM 370
Query: 406 IAEGKLDKHGK 416
I G LDKHGK
Sbjct: 371 IKAGALDKHGK 381
>gi|294895715|ref|XP_002775270.1| Centromere/microtubule-binding protein CBF5, putative [Perkinsus
marinus ATCC 50983]
gi|239881344|gb|EER07086.1| Centromere/microtubule-binding protein CBF5, putative [Perkinsus
marinus ATCC 50983]
Length = 485
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 276/408 (67%), Positives = 335/408 (82%), Gaps = 4/408 (0%)
Query: 21 ADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTG 80
A AK +A ++ ADA + D +IKP S +P I+TS+WP+LLKNYDRLNVRTG
Sbjct: 2 AKAKKEAPTAAGASSTADAQKST----DCMIKPSSVSPPINTSEWPLLLKNYDRLNVRTG 57
Query: 81 HYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPK 140
HYTPLP G SPL RPL ++ YG+ NLDKP NPSSHEVVAWIKRIL+ EKTGHSGTLDPK
Sbjct: 58 HYTPLPFGCSPLNRPLDQHLLYGVCNLDKPVNPSSHEVVAWIKRILKCEKTGHSGTLDPK 117
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLI 200
V+G L+VC++RATRLVK+QQGAGKEYVCV R H A + RAL+ LTGA+FQRPP+I
Sbjct: 118 VSGCLLVCLNRATRLVKAQQGAGKEYVCVVRFHADPGGEAAIIRALDQLTGALFQRPPVI 177
Query: 201 SAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 260
+AVKRQLRIRTIY SKLL+YD ++H+ VF +SCEAGTY+RT+CVH+GL+LGVG HMQELR
Sbjct: 178 AAVKRQLRIRTIYWSKLLDYDEEKHMAVFHVSCEAGTYIRTLCVHMGLLLGVGAHMQELR 237
Query: 261 RVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVN 320
RVRSG LGE D +VTMHD++DAQ++Y++ R E YLRR IMPLE +L SY R+V+KD+ VN
Sbjct: 238 RVRSGNLGERDQLVTMHDLLDAQYVYESTRSEEYLRRTIMPLERILVSYPRIVLKDSAVN 297
Query: 321 AICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIK 380
A+CYGAKLM+ G+LRFEN IEVG++VVLMTTKGEAVALGIA+MTTAV+A+ DHG VA IK
Sbjct: 298 AVCYGAKLMVVGVLRFENGIEVGKDVVLMTTKGEAVALGIAQMTTAVIASVDHGCVATIK 357
Query: 381 RVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
RV+M+RDTY +WG GPRAS KKKLI GKLD+ G+ NE TP+ W ++
Sbjct: 358 RVIMERDTYDSRWGYGPRASEKKKLILNGKLDEKGRPNENTPESWLKH 405
>gi|170649648|gb|ACB21235.1| dyskeratosis congenita 1, dyskerin (predicted) [Callicebus moloch]
Length = 515
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/423 (66%), Positives = 350/423 (82%), Gaps = 1/423 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G IN
Sbjct: 34 EEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFIN 93
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 154 VGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 213
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWLY
Sbjct: 214 GIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLY 273
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+
Sbjct: 274 DNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEI 333
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 334 VVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMI 393
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
+G LDKHGK + TP W + V V + A Q VAE +KR+ ++
Sbjct: 394 KQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAEAAKTAKRKRESES 453
Query: 466 SGD 468
D
Sbjct: 454 ESD 456
>gi|50306599|ref|XP_453273.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|3023443|sp|O13473.1|CBF5_KLULA RecName: Full=Centromere/microtubule-binding protein CBF5; AltName:
Full=Centromere-binding factor 5; AltName: Full=H/ACA
snoRNP protein CBF5; AltName: Full=Small nucleolar RNP
protein CBF5
gi|2258455|gb|AAC64862.1| centromere-binding factor 5 [Kluyveromyces lactis]
gi|49642407|emb|CAH00369.1| KLLA0D04796p [Kluyveromyces lactis]
Length = 474
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/383 (71%), Positives = 332/383 (86%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F+IKP+S +PS +TS+WP+LLK+YD+L VR+GHYTP+P G SPLKR L YI G+INL
Sbjct: 4 EFVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINL 63
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV
Sbjct: 64 DKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYV 123
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD + D ++ R LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+L
Sbjct: 124 CIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNLG 183
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDVMDAQW+YD
Sbjct: 184 VFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTLHDVMDAQWVYD 243
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +EVV
Sbjct: 244 NTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEVV 303
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+ IA+M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP A KK++ A
Sbjct: 304 LITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQMKA 363
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+GKLDK+G+ NE TP+ W + V
Sbjct: 364 DGKLDKYGRANENTPETWKKTYV 386
>gi|417402069|gb|JAA47893.1| Putative pseudouridine synthase [Desmodus rotundus]
Length = 509
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/385 (71%), Positives = 339/385 (88%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A +F+IKP+S +DTSQWP+LLKN+D+LN+RT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AGEFLIKPESKVAQLDTSQWPLLLKNFDKLNIRTTHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + A++ARALE LTGA+FQRPPLI+AVKRQLR+RTIYE+K++EYD +R
Sbjct: 153 YVGIVRLHNAIQGGAQLARALETLTGALFQRPPLIAAVKRQLRVRTIYENKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICIAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
I +G LDK+GK + TP WA+ V
Sbjct: 393 IKQGLLDKYGKPTDSTPTTWAQEYV 417
>gi|197215692|gb|ACH53081.1| H/ACA ribonucleoprotein complex subunit 4 (predicted) [Otolemur
garnettii]
Length = 523
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/380 (72%), Positives = 335/380 (88%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+ F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP+G +PLKR + DYIR G I
Sbjct: 33 AEIFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPSGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRVI PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVIYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
I +G LDKHGK TP W
Sbjct: 393 IKQGLLDKHGKPTNSTPATW 412
>gi|330934014|ref|XP_003304379.1| hypothetical protein PTT_16958 [Pyrenophora teres f. teres 0-1]
gi|311319015|gb|EFQ87515.1| hypothetical protein PTT_16958 [Pyrenophora teres f. teres 0-1]
Length = 499
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/378 (73%), Positives = 325/378 (85%), Gaps = 1/378 (0%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKP + P+IDTS WP+LLKNY L VRT HYTP+PNG +PL R L YI G+INLD
Sbjct: 11 YVIKPAAAAPAIDTSDWPLLLKNYSDLLVRTSHYTPIPNGCAPLSRDLKSYISSGVINLD 70
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 71 KPSNPSSHEVVSWIKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 130
Query: 169 VARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +R L
Sbjct: 131 VIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERQLG 190
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DAQWL+D
Sbjct: 191 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTLHDVLDAQWLHD 250
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDEAYLR+VI PLE LL SYKR+VVKD++VNAICYGAKLM+PGLLRFE IE+ EEVV
Sbjct: 251 NNRDEAYLRKVIAPLESLLMSYKRIVVKDSSVNAICYGAKLMLPGLLRFEKGIEIHEEVV 310
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL A+M+ M++CDHGVVA+IKRV+M+RD YPR+WG+GP A+ KKK+
Sbjct: 311 LMTTKGEAIALAYAQMSAVEMSSCDHGVVAKIKRVIMERDLYPRRWGMGPVATEKKKMKE 370
Query: 408 EGKLDKHGKLNEKTPQEW 425
G LDK G+ N+KTP +W
Sbjct: 371 AGTLDKFGRPNDKTPAKW 388
>gi|189189906|ref|XP_001931292.1| centromere/microtubule-binding protein CBF5 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972898|gb|EDU40397.1| centromere/microtubule-binding protein CBF5 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 499
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/378 (73%), Positives = 325/378 (85%), Gaps = 1/378 (0%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKP + P+IDTS WP+LLKNY L VRT HYTP+PNG +PL R L YI G+INLD
Sbjct: 11 YVIKPAAAAPAIDTSDWPLLLKNYSDLLVRTSHYTPIPNGCAPLSRDLKSYISSGVINLD 70
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 71 KPSNPSSHEVVSWIKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 130
Query: 169 VARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +R L
Sbjct: 131 VIRLHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERQLG 190
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DAQWL+D
Sbjct: 191 VFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTLHDVLDAQWLHD 250
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDEAYLR+VI PLE LL SYKR+VVKD++VNAICYGAKLM+PGLLRFE IE+ EEVV
Sbjct: 251 NNRDEAYLRKVIAPLESLLMSYKRIVVKDSSVNAICYGAKLMLPGLLRFEKGIEIHEEVV 310
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL A+M+ M++CDHGVVA+IKRV+M+RD YPR+WG+GP A+ KKK+
Sbjct: 311 LMTTKGEAIALAYAQMSAVEMSSCDHGVVAKIKRVIMERDLYPRRWGMGPVATEKKKMKE 370
Query: 408 EGKLDKHGKLNEKTPQEW 425
G LDK G+ N+KTP +W
Sbjct: 371 AGTLDKFGRPNDKTPAKW 388
>gi|74204437|dbj|BAE39967.1| unnamed protein product [Mus musculus]
Length = 509
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/447 (64%), Positives = 360/447 (80%), Gaps = 15/447 (3%)
Query: 24 KNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYT 83
+ D D A+ A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYT
Sbjct: 23 QED------DVAEIQH------AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYT 70
Query: 84 PLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG 143
PLP G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLD KVTG
Sbjct: 71 PLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDHKVTG 130
Query: 144 NLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
LIVCI+RATRLVKSQQ AGKEYV + RLH+ + +++RALE LTGA+FQRPPLI+AV
Sbjct: 131 CLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAV 190
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 263
KRQLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVR
Sbjct: 191 KRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVR 250
Query: 264 SGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAIC 323
SG++ E D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAIC
Sbjct: 251 SGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAIC 310
Query: 324 YGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
YGAK+M+PGLLR+E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+
Sbjct: 311 YGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVI 370
Query: 384 MDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASL 442
M+RDTYPRKWGLGP+AS KK +I +G LDKHGK + TP W ++ + G + + +
Sbjct: 371 MERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTE 430
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDS 469
A A Q A E V KRK D+ +S
Sbjct: 431 AVQAPQLAA--EAVNVIKRKRDSESES 455
>gi|354490287|ref|XP_003507290.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Cricetulus
griseus]
gi|344236019|gb|EGV92122.1| H/ACA ribonucleoprotein complex subunit 4 [Cricetulus griseus]
Length = 513
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/424 (66%), Positives = 352/424 (83%), Gaps = 1/424 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTP+P G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPIPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK TP W ++ + G + + A Q AE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTGNTPPTWKQDYIDYSDSGKKALVAEALQVPQLAAEAVKVIKRKRESE 452
Query: 465 ASGD 468
+ D
Sbjct: 453 SECD 456
>gi|355684038|gb|AER97272.1| dyskeratosis congenita 1, dyskerin [Mustela putorius furo]
Length = 532
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/385 (71%), Positives = 337/385 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 58 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFI 117
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 118 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 177
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 178 YVGIVRLHSAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 237
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 238 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 297
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++D++YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 298 YDNHKDDSYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 357
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 358 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 417
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
I +G LDKHGK + TP W + V
Sbjct: 418 IKQGLLDKHGKPTDSTPATWMQEYV 442
>gi|366992157|ref|XP_003675844.1| hypothetical protein NCAS_0C04900 [Naumovozyma castellii CBS 4309]
gi|342301709|emb|CCC69480.1| hypothetical protein NCAS_0C04900 [Naumovozyma castellii CBS 4309]
Length = 475
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 273/383 (71%), Positives = 331/383 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+KDF+I P++ S +TS+WP+LLK+YD+L VR+GHYTP+P G SPLKR L YI G+I
Sbjct: 2 SKDFVITPEATGASANTSEWPLLLKDYDKLLVRSGHYTPIPTGASPLKRDLKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVH+G++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHMGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M+T +ATCDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLITTKGEAIAVAIAQMSTVDLATCDHGVVATVKRCIMERDLYPRRWGLGPVAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARN 428
A+GKLDK+G+ NE TP++W +N
Sbjct: 362 KADGKLDKYGRTNENTPEDWKKN 384
>gi|397477294|ref|XP_003810008.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Pan paniscus]
Length = 514
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/417 (67%), Positives = 347/417 (83%), Gaps = 1/417 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKR 461
I +G LDKHGK + TP W + V V + A Q VAE +KR
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAEAAKTAKRKR 449
>gi|85099653|ref|XP_960827.1| centromere/microtubule-binding protein CBF5 [Neurospora crassa
OR74A]
gi|28922353|gb|EAA31591.1| centromere/microtubule-binding protein CBF5 [Neurospora crassa
OR74A]
gi|28950091|emb|CAD70854.1| probable CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 [Neurospora
crassa]
gi|336472631|gb|EGO60791.1| hypothetical protein NEUTE1DRAFT_127587 [Neurospora tetrasperma
FGSC 2508]
gi|350294136|gb|EGZ75221.1| centromere/microtubule-binding protein CBF5 [Neurospora tetrasperma
FGSC 2509]
Length = 480
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 273/380 (71%), Positives = 322/380 (84%), Gaps = 2/380 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+ +IKPQ+ P++DTS+WP+LLKNY L VRTGH+TP+P G SP KR + Y+ G+INL
Sbjct: 6 EHVIKPQATEPAVDTSEWPLLLKNYSNLLVRTGHFTPIPAGSSPSKRDIKSYVSSGVINL 65
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKR+LRVEKTGHSGTLDPKVTG LIVC+DRATRLVK+QQGAGKEYV
Sbjct: 66 DKPSNPSSHEVVAWIKRMLRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQGAGKEYV 125
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV R HD VP A A ALE LTGA+FQRPPLISAVKRQLRIR+IYESKL+E+D DRHL
Sbjct: 126 CVIRFHDSVPGGEAAFASALETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNDRHL 185
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE-NDNMVTMHDVMDAQWL 285
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSGI+ E N +MVT+HDV+DAQW
Sbjct: 186 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGIMSEDNGSMVTLHDVLDAQWQ 245
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
+DN DE LR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLM+PGLLRFE IE EE
Sbjct: 246 FDNGGDETALRKVIQPLETLLTTYKRIVVKDSAVNAVCYGAKLMLPGLLRFEKGIETHEE 305
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+GIA+M M +CDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 306 VVLMTTKGEAIAIGIAQMNGVEMLSCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKL 365
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
++GKLDK G+ N +TP +W
Sbjct: 366 KSDGKLDKFGRPNAETPAKW 385
>gi|167045833|gb|ABZ10501.1| dyskeratosis congenita 1, dyskerin (predicted) [Callithrix jacchus]
Length = 515
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/423 (66%), Positives = 350/423 (82%), Gaps = 1/423 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G IN
Sbjct: 34 EEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFIN 93
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 154 VGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 213
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWLY
Sbjct: 214 GIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLY 273
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+
Sbjct: 274 DNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEI 333
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 334 VVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMI 393
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
+G LDKHGK + TP W + V VA+ A Q VA +KR+ ++
Sbjct: 394 KQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVAAEVVKAPQVVAGAAKTAKRKRESES 453
Query: 466 SGD 468
D
Sbjct: 454 ESD 456
>gi|444317647|ref|XP_004179481.1| hypothetical protein TBLA_0C01470 [Tetrapisispora blattae CBS 6284]
gi|387512522|emb|CCH59962.1| hypothetical protein TBLA_0C01470 [Tetrapisispora blattae CBS 6284]
Length = 478
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 273/385 (70%), Positives = 332/385 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+KD++I P++ +TS+WP+LLK++D+L VR+ HYTP+PNG SPLKR L YI G+I
Sbjct: 2 SKDYVITPEASGSVANTSEWPLLLKDFDKLLVRSSHYTPIPNGSSPLKRDLKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDV+DAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVLDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK+L
Sbjct: 302 VVLITTKGEAIAVAIAQMSTVDLASCDHGVVATVKRCIMERDLYPRRWGLGPIAQKKKQL 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W +N V
Sbjct: 362 KADGKLDKYGRINENTPEDWKKNYV 386
>gi|225007597|ref|NP_001028279.2| dyskerin [Danio rerio]
Length = 506
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/396 (69%), Positives = 340/396 (85%), Gaps = 1/396 (0%)
Query: 35 ADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKR 94
+D + D + DF+IKP+S S+DTSQWP+LLKN+D+LN+RT HYTPLP+G +PLKR
Sbjct: 18 SDEEVGDIQESG-DFLIKPESKVASLDTSQWPLLLKNFDKLNIRTAHYTPLPHGSNPLKR 76
Query: 95 PLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 154
+ DY+R G INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVC++RATR
Sbjct: 77 GIHDYVRSGFINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCVERATR 136
Query: 155 LVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYE 214
LVKSQQ AGKEYV + RLH+ + + ++ARALE LTGA+FQRPPLI+AVKRQLR+RTIYE
Sbjct: 137 LVKSQQSAGKEYVGIVRLHNALENEHQLARALECLTGALFQRPPLIAAVKRQLRVRTIYE 196
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
SKL+EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG+LGE DN+V
Sbjct: 197 SKLIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLV 256
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
TMHDV+DAQW +D+ +DE YLRRVI PLE LL S+KR+V+KD+ VNAICYGAK+M+PG+L
Sbjct: 257 TMHDVLDAQWQFDHNKDETYLRRVIFPLEKLLISHKRIVMKDSAVNAICYGAKIMLPGVL 316
Query: 335 RFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWG 394
R+E+ IEV +++V++TTKGEA+ +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWG
Sbjct: 317 RYEDGIEVNQDIVVITTKGEAICTAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWG 376
Query: 395 LGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
LGP+AS KK +I +G LDKHGK N TP +W V
Sbjct: 377 LGPKASQKKMMIQKGLLDKHGKPNNSTPSDWKEGYV 412
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/457 (58%), Positives = 335/457 (73%), Gaps = 62/457 (13%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S S+DTSQWP+LLKN+D+LN+RT HYTPLP+G +PLKR + DY+R G INL
Sbjct: 30 DFLIKPESKVASLDTSQWPLLLKNFDKLNIRTAHYTPLPHGSNPLKRGIHDYVRSGFINL 89
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVC++RATRLVKSQQ AGKEYV
Sbjct: 90 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYV 149
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + + ++ARALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L
Sbjct: 150 GIVRLHNALENEHQLARALECLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRLG 209
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW +D
Sbjct: 210 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFD 269
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
+ +DE YLRRVI PLE LL S+KR+V+KD+ VNAICYGAK+M+PG+LR+E+ IEV +++V
Sbjct: 270 HNKDETYLRRVIFPLEKLLISHKRIVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQDIV 329
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ +A MTTAV++TCDHGVVA+IKRV+M+RDTY
Sbjct: 330 VITTKGEAICTAVALMTTAVISTCDHGVVAKIKRVIMERDTY------------------ 371
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
P++W L P A ++ ++K LD G
Sbjct: 372 --------------PRKWG----LGPK----------------ASQKKMMIQKGLLDKHG 397
Query: 468 ---DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEA 501
+S + K+ V+ T KVKK E A
Sbjct: 398 KPNNSTPSDWKEGYVDY-------STTKVKKGGEASA 427
>gi|328872555|gb|EGG20922.1| pseudouridine synthase family protein [Dictyostelium fasciculatum]
Length = 554
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 269/386 (69%), Positives = 328/386 (84%), Gaps = 1/386 (0%)
Query: 45 TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
T F I+P S TP +DTSQWP+LLKNYD+L VRTGH+TP+P G+SPLKRP+ +Y++YGI
Sbjct: 23 TNGSFAIQP-SKTPQLDTSQWPLLLKNYDQLLVRTGHFTPIPTGHSPLKRPIAEYVKYGI 81
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKP+NPSSHEVV+WIK+IL+V KTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGK
Sbjct: 82 INLDKPSNPSSHEVVSWIKKILKVNKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGK 141
Query: 165 EYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
EY+ + RLH+ + DV+ + RA+E LTGA+FQRPP SAVK++LR+RTI ES L+EYD +R
Sbjct: 142 EYMGIVRLHNAIEDVSDLQRAVETLTGALFQRPPEKSAVKKRLRVRTIRESSLVEYDKER 201
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
+L + W+ CEAGTY+RT+CVH+GL++GVGGHMQELRRVRSGI+ E MVTMHDV DAQ
Sbjct: 202 NLGLIWVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKVGMVTMHDVKDAQH 261
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
++N +DE YLRRVI PLE +LT+Y R+VVKD+ +NAICYGAKLM+PGLLR+E DIE G+
Sbjct: 262 EFENLKDETYLRRVIQPLEAVLTNYPRIVVKDSAINAICYGAKLMVPGLLRYEKDIEAGD 321
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
EVVL+TTKGEA+A+GIA+MTTA MATCDHGVVA IKRV+MDRD YP KWGLGP A KK
Sbjct: 322 EVVLITTKGEAIAIGIAQMTTATMATCDHGVVATIKRVIMDRDVYPVKWGLGPNAKTKKT 381
Query: 405 LIAEGKLDKHGKLNEKTPQEWARNVV 430
+I +GKLDK G+ NE TP W+ + V
Sbjct: 382 MIKDGKLDKFGQPNEATPSNWSNSYV 407
>gi|395861029|ref|XP_003802796.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Otolemur
garnettii]
Length = 513
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/380 (72%), Positives = 335/380 (88%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+ F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP+G +PLKR + DYIR G I
Sbjct: 33 AEIFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPSGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRVI PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVIYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
I +G LDKHGK TP W
Sbjct: 393 IKQGLLDKHGKPTNSTPATW 412
>gi|281347051|gb|EFB22635.1| hypothetical protein PANDA_021575 [Ailuropoda melanoleuca]
Length = 391
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/385 (71%), Positives = 339/385 (88%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 5 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFI 64
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 65 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 124
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + ++++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 125 YVGIVRLHNAIEGGSQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 184
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 185 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 244
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 245 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 304
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 305 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 364
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
I +G LDKHGK + TP W + V
Sbjct: 365 IKQGLLDKHGKPTDSTPATWMQEYV 389
>gi|195171175|ref|XP_002026383.1| GL19980 [Drosophila persimilis]
gi|198461398|ref|XP_002138996.1| GA24087 [Drosophila pseudoobscura pseudoobscura]
gi|194111285|gb|EDW33328.1| GL19980 [Drosophila persimilis]
gi|198137332|gb|EDY69554.1| GA24087 [Drosophila pseudoobscura pseudoobscura]
Length = 519
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 330/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DADD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DADDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDESRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSEGDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+M+PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKIMLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA M++CDHGVVA+IKRV+M+RD YPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMSSCDHGVVAKIKRVIMERDIYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGFV 415
>gi|388583038|gb|EIM23341.1| putative rRNA pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 486
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/379 (74%), Positives = 332/379 (87%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DFI+KP +DTSQWP+LLKNYD+L VR+ HYTPLP G SPLKR LV YI+ G+IN
Sbjct: 11 QDFIVKPSDGVTQLDTSQWPLLLKNYDKLLVRSNHYTPLPFGCSPLKRDLVTYIKSGVIN 70
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWI+R+LR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 71 LDKPSNPSSHEVVAWIRRMLRTEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 130
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V V RLHDK+ D A + RA+E LTGA+FQRPPLISAVKRQLRIRTIYES L+E+D DR L
Sbjct: 131 VAVLRLHDKLQDPAALPRAIETLTGALFQRPPLISAVKRQLRIRTIYESNLIEFDNDRGL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E+D++V+MHDV+DAQW+Y
Sbjct: 191 AVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSEDDDIVSMHDVLDAQWIY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LL +YKR+VVKD+ VNA+CYGAKLMIPGLLR+EN IEV EEV
Sbjct: 251 DNTRDESYLRRVIRPLEALLVNYKRIVVKDSAVNALCYGAKLMIPGLLRYENGIEVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+TA ++T DHGVVA+IKR +M+RD +PRKWGLGPRA KKK+I
Sbjct: 311 VLMTTKGEAIAVGIAQMSTADLSTVDHGVVAKIKRCIMERDWFPRKWGLGPRAQQKKKMI 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
+G+LDK G+ + TP+ W
Sbjct: 371 KDGQLDKFGRHTDATPESW 389
>gi|429327653|gb|AFZ79413.1| rRNA pseudouridine synthase, putative [Babesia equi]
Length = 417
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 273/389 (70%), Positives = 323/389 (83%), Gaps = 1/389 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A F IKP++ P IDTS WP+LLKNYD+LNVRTGHYTP+PNG SPL R L +YIRYG I
Sbjct: 4 ANKFQIKPEANVPPIDTSNWPLLLKNYDKLNVRTGHYTPMPNGSSPLCRDLTNYIRYGFI 63
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHE+VAWIKRILR EKTGHSGTLDPKVTG L+VCIDRATRLVKSQQ GKE
Sbjct: 64 NLDKPANPSSHEIVAWIKRILRCEKTGHSGTLDPKVTGVLLVCIDRATRLVKSQQSHGKE 123
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + + H +KV R LE LTG++FQRPPLI+AVKRQLR+RTIY+SKLL+YD +++
Sbjct: 124 YVGIVKFHSTPESRSKVERVLETLTGSLFQRPPLIAAVKRQLRVRTIYQSKLLDYDEEQN 183
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ FW++CEAGTYVRT+CVH+GL+LG G HMQELRR++SG + E DNMVTMHDV+DAQ+L
Sbjct: 184 MATFWVNCEAGTYVRTLCVHMGLLLGTGAHMQELRRIKSGNITEYDNMVTMHDVLDAQYL 243
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD DE+YLR VI PLE LL +KR+VVKD+ VNAICYGAKLMIPG+LRFEN IE+ E
Sbjct: 244 YDKTTDESYLRYVISPLEKLLIEFKRIVVKDSCVNAICYGAKLMIPGVLRFENGIELHTE 303
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VV++TTKGEA+A+GIA+M TAV+A+ DHG+VA IKRV+MDRDTYP +WG GPRAS KKKL
Sbjct: 304 VVMITTKGEAIAIGIAQMPTAVIASVDHGIVAVIKRVIMDRDTYPMRWGYGPRASEKKKL 363
Query: 406 IAEGKLDKHGKLNEKTPQEWARN-VVLPP 433
G LDKHGK NE TP W ++ +PP
Sbjct: 364 QLAGMLDKHGKPNESTPASWLKSEGFIPP 392
>gi|408397482|gb|EKJ76624.1| hypothetical protein FPSE_03174 [Fusarium pseudograminearum CS3096]
Length = 485
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 287/383 (74%), Positives = 337/383 (87%), Gaps = 1/383 (0%)
Query: 45 TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
T +++IIKPQ+ TP++DTSQWP+LLKNY++L RTGH+TP+PNG SPLKR L YI G+
Sbjct: 12 TEEEYIIKPQAHTPTLDTSQWPLLLKNYEKLLTRTGHFTPIPNGCSPLKRDLKQYISSGV 71
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGK
Sbjct: 72 INLDKPSNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGK 131
Query: 165 EYVCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
EYV V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D D
Sbjct: 132 EYVAVIRLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDND 191
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E+ +VT+HDV+DAQ
Sbjct: 192 RHLGVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDESKGLVTLHDVLDAQ 251
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
W DN RDE+YLR+VI PLE LLTSYKRLVVKD+ VNA+CYGAKLM+PGLLR+E IE
Sbjct: 252 WQMDNTRDESYLRKVISPLETLLTSYKRLVVKDSAVNAVCYGAKLMLPGLLRYEAAIEHH 311
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
EEVVLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KK
Sbjct: 312 EEVVLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKK 371
Query: 404 KLIAEGKLDKHGKLNEKTPQEWA 426
KL A+GKLDK+G+ N+ TP +W+
Sbjct: 372 KLKADGKLDKYGRPNDATPAKWS 394
>gi|342875987|gb|EGU77652.1| hypothetical protein FOXB_11827 [Fusarium oxysporum Fo5176]
Length = 487
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/377 (76%), Positives = 334/377 (88%), Gaps = 1/377 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
IKPQ+ TPS+DTSQWP+LLKNYD+L VRTGH+TP+PNG SPLKR L YI G+INLDKP
Sbjct: 20 IKPQATTPSLDTSQWPLLLKNYDKLLVRTGHFTPIPNGCSPLKRDLKQYISSGVINLDKP 79
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV V
Sbjct: 80 SNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVI 139
Query: 171 RLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRHL VF
Sbjct: 140 RLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRHLGVF 199
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E+ +VT+HDV+DAQW DN
Sbjct: 200 WVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDESKGLVTLHDVLDAQWQMDNT 259
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE+YLR+VI PLE LLTSYKRLVVKD+ VNA+CYGAKLM+PGLLR+E+ IE EEVVLM
Sbjct: 260 RDESYLRKVISPLETLLTSYKRLVVKDSAVNAVCYGAKLMLPGLLRYESAIEHHEEVVLM 319
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL A+G
Sbjct: 320 TTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLKADG 379
Query: 410 KLDKHGKLNEKTPQEWA 426
KLDK+G+ N+ TP +W+
Sbjct: 380 KLDKYGRPNDATPAKWS 396
>gi|293333377|ref|NP_001168887.1| uncharacterized protein LOC100382692 [Zea mays]
gi|223973499|gb|ACN30937.1| unknown [Zea mays]
Length = 487
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/377 (76%), Positives = 334/377 (88%), Gaps = 1/377 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
IKPQ+ TPS+DTSQWP+LLKNYD+L VRTGH+TP+PNG SPLKR L YI G+INLDKP
Sbjct: 20 IKPQATTPSLDTSQWPLLLKNYDKLLVRTGHFTPIPNGCSPLKRDLKQYISSGVINLDKP 79
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV V
Sbjct: 80 SNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVAVI 139
Query: 171 RLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRHL VF
Sbjct: 140 RLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRHLGVF 199
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E+ +VT+HDV+DAQW DN
Sbjct: 200 WVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDESKGLVTLHDVLDAQWQMDNT 259
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RDE+YLR+VI PLE LLTSYKRLVVKD+ VNA+CYGAKLM+PGLLR+E+ IE EEVVLM
Sbjct: 260 RDESYLRKVISPLETLLTSYKRLVVKDSAVNAVCYGAKLMLPGLLRYESAIEHHEEVVLM 319
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL A+G
Sbjct: 320 TTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLKADG 379
Query: 410 KLDKHGKLNEKTPQEWA 426
KLDK+G+ N+ TP +W+
Sbjct: 380 KLDKYGRPNDATPAKWS 396
>gi|91093224|ref|XP_967291.1| PREDICTED: similar to AGAP004739-PA [Tribolium castaneum]
gi|270016592|gb|EFA13038.1| hypothetical protein TcasGA2_TC010569 [Tribolium castaneum]
Length = 502
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 267/390 (68%), Positives = 328/390 (84%), Gaps = 1/390 (0%)
Query: 42 NNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIR 101
N +F ++P S +D+S+WP+LLK +DRLNVRT HY PLP G SPL+R + DY++
Sbjct: 26 NLQKGSEFAVEPSSVIAKLDSSKWPLLLKYFDRLNVRTNHYVPLPFGSSPLRREISDYVK 85
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
G INLDKP+NPSSHEVVAWIKRIL+VEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ
Sbjct: 86 SGYINLDKPSNPSSHEVVAWIKRILKVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQA 145
Query: 162 AGKEYVCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
AGKEYV V +LH V KV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKL +Y
Sbjct: 146 AGKEYVAVFKLHSTVQGGTPKVLQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLFQY 205
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
D R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D M TMHDV+
Sbjct: 206 DESRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSEQDQMATMHDVL 265
Query: 281 DAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDI 340
DAQWLY+N++DE YLRRVI PLE LL +KR+++KD++VNA+CYGAK+++PG+LR+E++I
Sbjct: 266 DAQWLYENHKDENYLRRVIRPLEGLLVKHKRIIMKDSSVNAVCYGAKILLPGILRYEDNI 325
Query: 341 EVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAS 400
E+ EE+V++TTKGEA+ALGIA MTTA +A+CDHGVVA+IKRV+M+RDTYPRKWGLGPR S
Sbjct: 326 ELNEEIVIVTTKGEAIALGIALMTTATIASCDHGVVAKIKRVIMERDTYPRKWGLGPRTS 385
Query: 401 MKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
KK LIA+G+LDK+GK NE TP+EW + V
Sbjct: 386 QKKILIAKGQLDKYGKPNENTPKEWLNSYV 415
>gi|375065910|gb|AFA28436.1| FI18403p1 [Drosophila melanogaster]
Length = 534
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 329/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 47 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 106
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 107 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 166
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 167 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 226
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 227 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 286
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 287 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 346
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 347 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 406
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 407 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 441
>gi|430813879|emb|CCJ28818.1| unnamed protein product [Pneumocystis jirovecii]
Length = 470
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/414 (70%), Positives = 336/414 (81%), Gaps = 10/414 (2%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D++IKP++ + + D S WP+LLKNYD+L VRTGHYTP+P+G SPLKR + YI G+INL
Sbjct: 12 DYLIKPENISGNADASTWPLLLKNYDKLIVRTGHYTPIPHGSSPLKRDIKSYISSGVINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 72 DKPANPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 131
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV R H+ + K A+ LE LTGA+FQRPPLISAVKRQLRIRTI+ESKLLE+D DRHL
Sbjct: 132 CVIRFHEALSSEKKFAQCLETLTGALFQRPPLISAVKRQLRIRTIHESKLLEFDNDRHLG 191
Query: 228 VFWISCEAGTYVRTMC----VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
VF +SCEAGTY+ + VHLGL+LGVG HMQELRRVRSG + E D MVTMHDV+DAQ
Sbjct: 192 VFRVSCEAGTYIHHVLIFTSVHLGLLLGVGAHMQELRRVRSGCMSEMDGMVTMHDVLDAQ 251
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
W YDN RDE YLRRVI PLE LL SYKR+VVKD+ VNAICYGAKLMIPGLLR+E+ IE+
Sbjct: 252 WEYDNTRDEKYLRRVIRPLESLLVSYKRIVVKDSAVNAICYGAKLMIPGLLRYESGIEIN 311
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
EEVVLMTTKGEA+ALGIA+M+T ++TCDHGVVA+IKR +M+RDTYPR+WGLGP++ KK
Sbjct: 312 EEVVLMTTKGEAIALGIAQMSTVELSTCDHGVVAKIKRCIMERDTYPRRWGLGPQSMKKK 371
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARNVV---LPPGGDSVVASLAAAAEQTVAEKE 454
L EGKLDK+G++N+ TP+EW V LP G S S E T+ E E
Sbjct: 372 ILKKEGKLDKYGRINDATPEEWKSTYVDYNLPSGQPSEQPS---TLETTIKEPE 422
>gi|431897753|gb|ELK06652.1| H/ACA ribonucleoprotein complex subunit 4 [Pteropus alecto]
Length = 593
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 276/384 (71%), Positives = 336/384 (87%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G IN
Sbjct: 127 EEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTTHYTPLPCGSNPLKREIGDYIRTGFIN 186
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 187 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 246
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + RLH+ + ++ RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 247 VGIVRLHNAIEGGTQLFRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 306
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWLY
Sbjct: 307 GIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLY 366
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +EV
Sbjct: 367 DNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEV 426
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEAV + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 427 VVITTKGEAVCIAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMI 486
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
+G LDKHGK + TP W + V
Sbjct: 487 KQGLLDKHGKRTDSTPVTWTQEYV 510
>gi|195586327|ref|XP_002082929.1| GD11839 [Drosophila simulans]
gi|194194938|gb|EDX08514.1| GD11839 [Drosophila simulans]
Length = 508
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 329/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 415
>gi|194886190|ref|XP_001976568.1| GG22950 [Drosophila erecta]
gi|190659755|gb|EDV56968.1| GG22950 [Drosophila erecta]
Length = 508
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 330/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD +R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDENRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 415
>gi|195341866|ref|XP_002037526.1| GM18314 [Drosophila sechellia]
gi|194132376|gb|EDW53944.1| GM18314 [Drosophila sechellia]
Length = 502
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/428 (64%), Positives = 340/428 (79%), Gaps = 7/428 (1%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV-----LPPGGDSVVASLAAAAEQTV 450
GP+AS KK LIA GKLDK G+ NE TP+EW V P D + ++ Q+V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYVDYNAKKPAAQDVSATNGSSEPSQSV 440
Query: 451 AEKETAGV 458
E A V
Sbjct: 441 EETAAAAV 448
>gi|169612299|ref|XP_001799567.1| hypothetical protein SNOG_09268 [Phaeosphaeria nodorum SN15]
gi|160702476|gb|EAT83460.2| hypothetical protein SNOG_09268 [Phaeosphaeria nodorum SN15]
Length = 497
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/392 (70%), Positives = 326/392 (83%), Gaps = 15/392 (3%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLN-----VRTGHYTPLPNGYSPLKRPLVDYIRYG 103
++IKP++ P+IDTS WP+LLKNY N VRT HYTP+P G +PL R + YI G
Sbjct: 11 YVIKPEAAAPAIDTSDWPLLLKNYSESNMPAVLVRTSHYTPIPQGCAPLSRDIKSYISSG 70
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVV+W+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAG
Sbjct: 71 VINLDKPSNPSSHEVVSWVKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 130
Query: 164 KEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYVCV R+HDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D
Sbjct: 131 KEYVCVIRMHDKLPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDN 190
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
+R L VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E ++VT+HDV+DA
Sbjct: 191 ERQLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDETKDLVTLHDVLDA 250
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
QWL+DN RDE+YLR VI PLE LLTSYKR+VVKD++VNAICYGAKLMIPGLLRFE IE+
Sbjct: 251 QWLHDNNRDESYLRHVISPLESLLTSYKRVVVKDSSVNAICYGAKLMIPGLLRFEKGIEI 310
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
EE+VLMTTKGEA+AL A+M+ M++CDHGVVARIKRV+M+RD YPR+WG+GP A+ K
Sbjct: 311 HEEIVLMTTKGEAIALAYAQMSAVEMSSCDHGVVARIKRVIMERDLYPRRWGMGPVATEK 370
Query: 403 KKLIAEGKLD---------KHGKLNEKTPQEW 425
KK+ G LD K+G+ NEKTP +W
Sbjct: 371 KKMKEAGTLDVSVIFSLLGKYGRPNEKTPAKW 402
>gi|195489554|ref|XP_002092788.1| GE14387 [Drosophila yakuba]
gi|194178889|gb|EDW92500.1| GE14387 [Drosophila yakuba]
Length = 508
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 330/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD +R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDENRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 415
>gi|17975520|ref|NP_525120.1| nucleolar protein at 60B, isoform A [Drosophila melanogaster]
gi|62471759|ref|NP_001014547.1| nucleolar protein at 60B, isoform B [Drosophila melanogaster]
gi|281364183|ref|NP_001163286.1| nucleolar protein at 60B, isoform C [Drosophila melanogaster]
gi|281364189|ref|NP_001163289.1| nucleolar protein at 60B, isoform F [Drosophila melanogaster]
gi|3914156|sp|O44081.1|DKC1_DROME RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Nucleolar protein AT band 60B; AltName:
Full=Protein minifly
gi|2661227|gb|AAC97117.1| nucleolar protein at band 60B [Drosophila melanogaster]
gi|4322557|gb|AAD16092.1| minifly protein [Drosophila melanogaster]
gi|7291757|gb|AAF47178.1| nucleolar protein at 60B, isoform A [Drosophila melanogaster]
gi|61678336|gb|AAX52682.1| nucleolar protein at 60B, isoform B [Drosophila melanogaster]
gi|112382762|gb|ABI17547.1| MFL protein [Drosophila melanogaster]
gi|272432682|gb|ACZ94558.1| nucleolar protein at 60B, isoform C [Drosophila melanogaster]
gi|272432685|gb|ACZ94561.1| nucleolar protein at 60B, isoform F [Drosophila melanogaster]
Length = 508
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 329/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 415
>gi|72679805|gb|AAI00011.1| Dyskeratosis congenita 1, dyskerin [Danio rerio]
Length = 507
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/383 (71%), Positives = 334/383 (87%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S S+DTSQWP+LLKN+D+LN+RT HYTPLP+G +PLKR + DY+R G INL
Sbjct: 30 DFLIKPESKVASLDTSQWPLLLKNFDKLNIRTAHYTPLPHGSNPLKRGIHDYVRSGFINL 89
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVC++RATRLVKSQQ AGKEYV
Sbjct: 90 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGKEYV 149
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + + ++ARALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L
Sbjct: 150 GIVRLHNALENEHQLARALECLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRLG 209
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW +D
Sbjct: 210 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFD 269
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
+ +DE YLRRVI PLE LL S+K +V+KD+ VNAICYGAK+M+PG+LR+E+ IEV +++V
Sbjct: 270 HNKDETYLRRVIFPLEKLLISHKGIVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQDIV 329
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 330 VITTKGEAICTAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQ 389
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+G LDKHGK N TP +W V
Sbjct: 390 KGLLDKHGKPNNSTPSDWKEGYV 412
>gi|195431316|ref|XP_002063689.1| GK15777 [Drosophila willistoni]
gi|194159774|gb|EDW74675.1| GK15777 [Drosophila willistoni]
Length = 1467
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 266/383 (69%), Positives = 326/383 (85%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP S ++TSQWP+LLKN+D+LN+R+ HYTPL +G SPL R + +Y++ G INL
Sbjct: 989 DFQIKPSSKIAQLETSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKSGFINL 1048
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 1049 DKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYV 1108
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+YD R++
Sbjct: 1109 AIFKLHGPVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDEKRNMG 1168
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVTMHDV+DA WLY+
Sbjct: 1169 VFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYE 1228
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+M+PG+LR+E+ IE+ +E+V
Sbjct: 1229 NHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKIMLPGVLRYEDGIEIDQEIV 1288
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
+ TTKGEA+ L IA MTTA M++CDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK LIA
Sbjct: 1289 ICTTKGEAICLAIALMTTATMSSCDHGVVAKIKRVIMERDTYPRKWGLGPKASAKKALIA 1348
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
GKLDK G+ NE TP+EW V
Sbjct: 1349 AGKLDKFGRPNENTPKEWLTGFV 1371
>gi|157816752|gb|ABV82369.1| LD07711p [Drosophila melanogaster]
Length = 489
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 329/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 42 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 101
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 102 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 161
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 162 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 221
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 222 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 281
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 282 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 341
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 342 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 401
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 402 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 436
>gi|346319924|gb|EGX89525.1| centromere/microtubule binding protein CBF5 [Cordyceps militaris
CM01]
Length = 486
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 330/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKPQ+ TP++DTS WP+LLKNYD+L VRTGH+TP+PNG SPLKR L YI G+INL
Sbjct: 14 DYSIKPQAVTPALDTSNWPLLLKNYDKLLVRTGHFTPIPNGCSPLKRDLKSYISSGVINL 73
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV
Sbjct: 74 DKPSNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYV 133
Query: 168 CVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V RLHDK+P A+ ARALE +TGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRHL
Sbjct: 134 AVVRLHDKLPGGQAQFARALETMTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRHL 193
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E +VT+HDV+DAQW +
Sbjct: 194 GVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMHEGKQLVTLHDVLDAQWTH 253
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLTSYKRLVVKD+ VNA+CYGAKLM+PGLLR+E IE EE+
Sbjct: 254 DNTRDESYLRRVISPLETLLTSYKRLVVKDSAVNAVCYGAKLMLPGLLRYEAGIEHHEEI 313
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+AL A+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 314 VLMTTKGEAIALAYAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAQEKKKLK 373
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK G+ N+ TP +W
Sbjct: 374 ADGKLDKFGRTNDATPAKW 392
>gi|19528063|gb|AAL90146.1| AT23018p, partial [Drosophila melanogaster]
Length = 468
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 329/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 415
>gi|195124820|ref|XP_002006885.1| GI21310 [Drosophila mojavensis]
gi|193911953|gb|EDW10820.1| GI21310 [Drosophila mojavensis]
Length = 507
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 267/382 (69%), Positives = 325/382 (85%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R + +YI+ G INLD
Sbjct: 32 FQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYIKTGFINLD 91
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 92 KPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVA 151
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+YD R++ V
Sbjct: 152 IFKLHGPVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETRNMGV 211
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVTMHDV+DA WLY+N
Sbjct: 212 FWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYEN 271
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+M+PG+LR+E+ IE+ +E+V+
Sbjct: 272 HKDESMLRRVIKPLEGLLINHKRIIMKDSSVNAVCYGAKIMLPGVLRYEDGIEIEQEIVI 331
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
TTKGEA+ L IA MTTA M++CDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK LIA
Sbjct: 332 CTTKGEAICLAIAMMTTATMSSCDHGVVAKIKRVIMERDTYPRKWGLGPKASAKKALIAA 391
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
GKLDK G+ NE TP+EW V
Sbjct: 392 GKLDKFGRPNENTPKEWLTGFV 413
>gi|323454706|gb|EGB10576.1| hypothetical protein AURANDRAFT_23304, partial [Aureococcus
anophagefferens]
Length = 374
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/350 (78%), Positives = 311/350 (88%), Gaps = 1/350 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I P S TP +DTS+WP+LLK+YD+LNVRT HYTP+P+G SPLKRPL +Y+RYG INLDKP
Sbjct: 25 IAPSSVTPKLDTSKWPLLLKDYDKLNVRTAHYTPIPSGCSPLKRPLAEYLRYGCINLDKP 84
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV V
Sbjct: 85 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVAVL 144
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
RLH D AK+ RA+E LTGA+FQRPPLISAVKRQLRIRT+Y S LLEYD +RHL VF
Sbjct: 145 RLHGPC-DKAKLKRAVETLTGALFQRPPLISAVKRQLRIRTVYASSLLEYDAERHLAVFH 203
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+ CEAGTY+RT+CVHLGL++GVGGHMQELRRVRSG L EN ++VTMHDV+DAQ YD +
Sbjct: 204 VKCEAGTYIRTLCVHLGLLVGVGGHMQELRRVRSGALDENAHLVTMHDVLDAQHHYDATK 263
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLRRV+MPLEVLLTS+KRLVVKD+ VNAICYGAKLM+PGLLRF +D++V EEVVLMT
Sbjct: 264 DESYLRRVVMPLEVLLTSFKRLVVKDSAVNAICYGAKLMMPGLLRFADDVDVNEEVVLMT 323
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAS 400
TKGEA+A+GIA MTT+VMA CDHG VARIKRV+M+RDTYPRKWGLGP A+
Sbjct: 324 TKGEAIAVGIAMMTTSVMADCDHGAVARIKRVIMERDTYPRKWGLGPMAT 373
>gi|409083417|gb|EKM83774.1| hypothetical protein AGABI1DRAFT_66714 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 510
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/394 (70%), Positives = 340/394 (86%), Gaps = 4/394 (1%)
Query: 41 DNNATAK---DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLV 97
D A+A+ D+ IK ++ P +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR +
Sbjct: 8 DQVASAQLEGDYTIKSENSAPKLDTSQWPLLLKNYDKLLVRSSHFTPIPSGCSPLKRDIT 67
Query: 98 DYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 157
+YI+ G+INLDKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVK
Sbjct: 68 NYIKSGVINLDKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVK 127
Query: 158 SQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKL 217
SQQGAGKEYVCV RLH +P+ A + R L+ LTGA+FQRPPLISAVKRQLRIRTI+ESKL
Sbjct: 128 SQQGAGKEYVCVLRLHAPLPNPAALPRTLQTLTGALFQRPPLISAVKRQLRIRTIHESKL 187
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMH 277
E+D R+L VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + END++VTMH
Sbjct: 188 FEFDEKRNLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTMH 247
Query: 278 DVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
DV+DAQW+YDN RDE+YLRR + PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E
Sbjct: 248 DVLDAQWMYDNTRDESYLRRAVRPLESLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYE 307
Query: 338 NDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGP 397
DI + EE+VLMTTKGEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP
Sbjct: 308 ADISLNEEIVLMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGP 367
Query: 398 RASMKKKLIAEGKLDKHG-KLNEKTPQEWARNVV 430
A KKK++ +GKL KHG K++ TP+EW+R+ V
Sbjct: 368 VALQKKKMVKDGKLGKHGEKIDGVTPKEWSRDYV 401
>gi|223950515|gb|ACN29341.1| MIP05689p [Drosophila melanogaster]
Length = 534
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 269/395 (68%), Positives = 328/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 47 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 106
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 107 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 166
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ A KEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 167 VKSQQSASKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 226
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 227 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 286
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 287 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 346
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 347 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 406
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 407 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 441
>gi|195381389|ref|XP_002049435.1| GJ21579 [Drosophila virilis]
gi|194144232|gb|EDW60628.1| GJ21579 [Drosophila virilis]
Length = 508
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 266/382 (69%), Positives = 325/382 (85%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R + +YI+ G INLD
Sbjct: 32 FQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYIKTGFINLD 91
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 92 KPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVA 151
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+YD R++ V
Sbjct: 152 IFKLHGPVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETRNMGV 211
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVTMHDV+DA WLY+N
Sbjct: 212 FWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYEN 271
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+ LRRV+ PLE LL ++KR+++KD++VNA+CYGAK+M+PG+LR+E+ IE+ +E+V+
Sbjct: 272 HKDESMLRRVVKPLEGLLINHKRIIMKDSSVNAVCYGAKIMLPGVLRYEDGIEIEQEIVI 331
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
TTKGEA+ L IA MTTA M++CDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK LIA
Sbjct: 332 CTTKGEAICLAIAMMTTATMSSCDHGVVAKIKRVIMERDTYPRKWGLGPKASAKKALIAA 391
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
GKLDK G+ NE TP+EW V
Sbjct: 392 GKLDKFGRPNENTPKEWLTGFV 413
>gi|194756825|ref|XP_001960671.1| GF11381 [Drosophila ananassae]
gi|190621969|gb|EDV37493.1| GF11381 [Drosophila ananassae]
Length = 515
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 330/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DA+D K +F IKP S +DTSQWP+LLKN+D+LNVR+ HYTPL +G SPL R
Sbjct: 21 DAEDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNVRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDESRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+M+PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESLLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKIMLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA M++CDHGVVA+IKRV+M+RDTYP KWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMSSCDHGVVAKIKRVIMERDTYPSKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGFV 415
>gi|50289049|ref|XP_446954.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526263|emb|CAG59887.1| unnamed protein product [Candida glabrata]
Length = 474
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/385 (71%), Positives = 334/385 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+++ IIKP++ +PS + S+WP+LLK+YD+L VR+GHYTP+P G SPLKR L YI G+I
Sbjct: 2 SEEHIIKPETTSPSTNASEWPLLLKDYDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDV+DAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVLDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
+DN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 FDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+A+ IA+M+T +ATCDHGVVA +KR +M+RD YPR+WGLGP A KK+L
Sbjct: 302 VVLMTTKGEAIAVAIAQMSTVDLATCDHGVVATVKRCIMERDLYPRRWGLGPIAQKKKQL 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W ++ V
Sbjct: 362 KADGKLDKYGRVNESTPEDWKKSYV 386
>gi|449550788|gb|EMD41752.1| hypothetical protein CERSUDRAFT_147033 [Ceriporiopsis subvermispora
B]
Length = 525
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/384 (73%), Positives = 334/384 (86%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IK +S P +DTS+WP+LLKNYD+L VR+ H+TP+P+G SPLKR LV Y++ G+INL
Sbjct: 20 DFSIKSESSQPKLDTSEWPLLLKNYDKLLVRSAHFTPIPSGCSPLKRDLVSYVKSGVINL 79
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 80 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 139
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLH + + + RA++ LTGA+FQRPPLISAVKRQLRIRTIYESKLLE+D R+L
Sbjct: 140 AVLRLHSGLENPTDLPRAIQTLTGALFQRPPLISAVKRQLRIRTIYESKLLEFDEKRNLS 199
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L END+MVTMHDV+DAQWLYD
Sbjct: 200 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALSENDDMVTMHDVLDAQWLYD 259
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRR I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI V EEVV
Sbjct: 260 NTRDESYLRRAIRPLEALLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADISVNEEVV 319
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP+A KKKL+
Sbjct: 320 LMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPKAMEKKKLVK 379
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV 430
+GKL +HG K++ TP EW+R+ V
Sbjct: 380 DGKLGRHGEKIDGVTPAEWSRDYV 403
>gi|294949098|ref|XP_002786051.1| Centromere/microtubule-binding protein CBF5, putative [Perkinsus
marinus ATCC 50983]
gi|239900159|gb|EER17847.1| Centromere/microtubule-binding protein CBF5, putative [Perkinsus
marinus ATCC 50983]
Length = 486
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 269/383 (70%), Positives = 325/383 (84%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ D +IKP S +P I+TS+WP+LLKNYDRLNVRTGHYTPLP G SPL RPL ++ YG+
Sbjct: 25 STDCMIKPSSVSPPINTSEWPLLLKNYDRLNVRTGHYTPLPFGCSPLNRPLDQHLLYGVC 84
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP NPSSHEVVAWIKRIL+ EKTGHSGTLDPKV+G L+VC++RATRLVK+QQGAGKE
Sbjct: 85 NLDKPVNPSSHEVVAWIKRILKCEKTGHSGTLDPKVSGCLLVCLNRATRLVKAQQGAGKE 144
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVCV R H A + RAL+ LTGA+FQRPP+I+AVKRQLRIRTIY SKLL+YD ++H
Sbjct: 145 YVCVVRFHADPGGEAAIIRALDQLTGALFQRPPVIAAVKRQLRIRTIYWSKLLDYDEEKH 204
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ VF +SCEAGTY+RT+CVH+GL+LGVG HMQELRRVRSG LGE D +VTMHD++DAQ++
Sbjct: 205 MAVFHVSCEAGTYIRTLCVHMGLLLGVGAHMQELRRVRSGNLGEQDQLVTMHDLLDAQYV 264
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
Y++ R E YLRR IMPLE +L SY R+V+KD+ VNA+CYGAKLM+ G+LRFEN IEVG++
Sbjct: 265 YESTRSEEYLRRTIMPLERILVSYPRIVLKDSAVNAVCYGAKLMVVGVLRFENGIEVGKD 324
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEAVALGIA+MTTAV+A+ DHG VA IKRV+M+RDTY +WG GPRAS KKKL
Sbjct: 325 VVLMTTKGEAVALGIAQMTTAVIASVDHGCVATIKRVIMERDTYDSRWGYGPRASEKKKL 384
Query: 406 IAEGKLDKHGKLNEKTPQEWARN 428
I GKLD+ G+ NE TP+ W ++
Sbjct: 385 ILNGKLDEKGRPNENTPESWLKH 407
>gi|254582801|ref|XP_002499132.1| ZYRO0E04576p [Zygosaccharomyces rouxii]
gi|186703752|emb|CAQ43442.1| H/ACA ribonucleoprotein complex subunit 4 [Zygosaccharomyces
rouxii]
gi|238942706|emb|CAR30877.1| ZYRO0E04576p [Zygosaccharomyces rouxii]
Length = 498
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 269/385 (69%), Positives = 335/385 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+KDF+IKP + P+ DT++WP+LLK+YD+L +R+GHYTP+P G SP KR + Y+ G+I
Sbjct: 2 SKDFVIKPDTSGPTPDTAEWPLLLKDYDKLLMRSGHYTPIPAGSSPGKRDIKSYVNSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R+LE+LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRSLESLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HD++DAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTLHDILDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ IE+ +E
Sbjct: 242 YDNTRDESYLRRVIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEDGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPVAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
+GKLDK+G++NE TP++W ++ V
Sbjct: 362 KVDGKLDKYGRVNESTPEDWKKSYV 386
>gi|448115067|ref|XP_004202740.1| Piso0_001595 [Millerozyma farinosa CBS 7064]
gi|359383608|emb|CCE79524.1| Piso0_001595 [Millerozyma farinosa CBS 7064]
Length = 479
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 271/380 (71%), Positives = 333/380 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+++ IIKP++ PS DTS WP+LLK+YD+L VR+GHYTP+P G SPLKR L Y+ G+I
Sbjct: 2 SEEHIIKPEAVAPSNDTSSWPLLLKDYDKLLVRSGHYTPIPTGCSPLKRDLKSYVSSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ +LHD++ D ++++LE LTGA+FQRPPLISAVKRQLR+RTIY+SKL+E+D R
Sbjct: 122 YVCIVKLHDELKDAKDLSKSLENLTGALFQRPPLISAVKRQLRVRTIYDSKLIEFDNKRG 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + EN N+VT+HDVMDAQ++
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMDENSNLVTLHDVMDAQYI 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR+VI PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E+ IE+ +E
Sbjct: 242 YDNTRDESYLRKVIQPLETLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEDGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+GIA+MTT + +CDHGVVA++KR +M+RDTYPR+WGLGP A KK+L
Sbjct: 302 VVLITTKGEAIAIGIAQMTTVDLQSCDHGVVAKVKRCIMERDTYPRRWGLGPVAQKKKQL 361
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G++NE TPQ W
Sbjct: 362 KADGKLDKYGRVNENTPQSW 381
>gi|195023790|ref|XP_001985751.1| GH20974 [Drosophila grimshawi]
gi|193901751|gb|EDW00618.1| GH20974 [Drosophila grimshawi]
Length = 509
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 265/382 (69%), Positives = 324/382 (84%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F IKP S ++TSQWP+LLKN+D+LN+R+ HYTPL +G SPL R + +YI+ G INLD
Sbjct: 32 FQIKPSSKIAELETSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYIKTGFINLD 91
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 92 KPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVA 151
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+SKLL+YD R++ V
Sbjct: 152 IFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETRNMGV 211
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVTMHDV+DA WLY+N
Sbjct: 212 FWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYEN 271
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+M+PG+LR+E+ IE+ +E+V+
Sbjct: 272 HKDESMLRRVIKPLEGLLINHKRIIMKDSSVNAVCYGAKIMLPGVLRYEDGIEIEQEIVI 331
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
TTKGEA+ L IA MTTA M++CDHGVVA+IKRV+M+RD YPRKWGLGP+AS KK LIA
Sbjct: 332 CTTKGEAICLAIALMTTATMSSCDHGVVAKIKRVIMERDIYPRKWGLGPKASAKKALIAA 391
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
GKLDK G+ NE TP+EW V
Sbjct: 392 GKLDKFGRPNENTPKEWLTGFV 413
>gi|215599015|ref|NP_001135935.1| H/ACA ribonucleoprotein complex subunit 4 isoform 2 [Homo sapiens]
Length = 509
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 286/443 (64%), Positives = 356/443 (80%), Gaps = 17/443 (3%)
Query: 26 DAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPL 85
D A + A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL
Sbjct: 26 DVAEI-------------QHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPL 72
Query: 86 PNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 145
G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG L
Sbjct: 73 ACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCL 132
Query: 146 IVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205
IVCI+RATRLVKSQQ AGKEYV + RLH+ + +++RALE LTGA+FQRPPLI+AVKR
Sbjct: 133 IVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKR 192
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
QLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG
Sbjct: 193 QLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSG 252
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
++ E D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYG
Sbjct: 253 VMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYG 312
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
AK+M+PG+LR+E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+
Sbjct: 313 AKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIME 372
Query: 386 RDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAA 445
RDTYPRKWGLGP+AS KK +I +G LDKHGK + TP W ++ VVA + A
Sbjct: 373 RDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQD---ESAKKEVVAEVVKA 429
Query: 446 AEQTVAEKETAGVKKRKLDASGD 468
Q VAE +KR+ ++ D
Sbjct: 430 P-QVVAEAAKTAKRKRESESESD 451
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/463 (62%), Positives = 357/463 (77%), Gaps = 48/463 (10%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
I +G LDKHGK + TP W K D
Sbjct: 393 IKQGLLDKHGKPTDSTPATW------------------------------------KQDE 416
Query: 466 SGDSPALNAKKAKVEEVVE-----VEKEETVKVKKVKEDEAEE 503
S AKK V EVV+ E +T K K+ E E++E
Sbjct: 417 S-------AKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDE 452
>gi|417411242|gb|JAA52066.1| Putative pseudouridine synthase, partial [Desmodus rotundus]
Length = 503
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/405 (68%), Positives = 342/405 (84%), Gaps = 13/405 (3%)
Query: 26 DAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPL 85
D A + A +F+IKP+S +DTSQWP+LLKN+D+LN+RT HYTPL
Sbjct: 25 DVAEI-------------QHAGEFLIKPESKVAQLDTSQWPLLLKNFDKLNIRTTHYTPL 71
Query: 86 PNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 145
P G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG L
Sbjct: 72 PCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCL 131
Query: 146 IVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205
IVCI+RATRLVKSQQ AGKEYV + RLH+ + A++ARALE LTGA+FQRPPLI+AVKR
Sbjct: 132 IVCIERATRLVKSQQSAGKEYVGIVRLHNAIQGGAQLARALETLTGALFQRPPLIAAVKR 191
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
QLR+RTIYE+K++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG
Sbjct: 192 QLRVRTIYENKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSG 251
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
++ E D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYG
Sbjct: 252 VMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYG 311
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
AK+M+PG+LR+E+ IEV +E+V++TTKGEA+ + +A MTTAV++TCDHGVVA+IKRV+M+
Sbjct: 312 AKIMLPGVLRYEDGIEVNQEIVVITTKGEAICIAVALMTTAVISTCDHGVVAKIKRVIME 371
Query: 386 RDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
RDTYPRKWGLGP+AS KK +I +G LDK+GK + TP WA+ V
Sbjct: 372 RDTYPRKWGLGPKASQKKLMIKQGLLDKYGKPTDSTPTTWAQEYV 416
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/484 (56%), Positives = 350/484 (72%), Gaps = 59/484 (12%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A +F+IKP+S +DTSQWP+LLKN+D+LN+RT HYTPLP G +PLKR + DYIR G I
Sbjct: 32 AGEFLIKPESKVAQLDTSQWPLLLKNFDKLNIRTTHYTPLPCGSNPLKREIGDYIRTGFI 91
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 92 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 151
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + A++ARALE LTGA+FQRPPLI+AVKRQLR+RTIYE+K++EYD +R
Sbjct: 152 YVGIVRLHNAIQGGAQLARALETLTGALFQRPPLIAAVKRQLRVRTIYENKMIEYDPERR 211
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 212 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 271
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 272 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 331
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + +A MTTAV++TCDHGVVA+IKRV+M+RDTY
Sbjct: 332 IVVITTKGEAICIAVALMTTAVISTCDHGVVAKIKRVIMERDTY---------------- 375
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
P++W L P A ++ +K+ LD
Sbjct: 376 ----------------PRKWG----LGPK----------------ASQKKLMIKQGLLDK 399
Query: 466 SGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGAD 525
G P + +E V+ + VK E AE ++ K +K+K++ + E
Sbjct: 400 YG-KPTDSTPTTWAQEYVDYS--DVVKT----EVGAETVQTPKVQKRKRESESDETLPVS 452
Query: 526 TEVV 529
+V+
Sbjct: 453 PQVI 456
>gi|28839578|gb|AAH47840.1| Dkc1 protein [Danio rerio]
Length = 497
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/383 (71%), Positives = 334/383 (87%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S S+DTSQWP+LLKN+D+LN+RT HYTPLP+G +PLKR + DY+R G INL
Sbjct: 30 DFLIKPESKVASLDTSQWPLLLKNFDKLNIRTAHYTPLPHGSNPLKRGIHDYVRSGFINL 89
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIV ++RATRLVKSQQ AGKEYV
Sbjct: 90 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVYVERATRLVKSQQSAGKEYV 149
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + + ++ARALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L
Sbjct: 150 GIVRLHNALENEHQLARALECLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRLG 209
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW +D
Sbjct: 210 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVLGEKDNLVTMHDVLDAQWQFD 269
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
+ +DE YLRRVI PLE LL S+KR+V+KD+ VNAICYGAK+M+PG+LR+E+ IEV +++V
Sbjct: 270 HNKDETYLRRVIFPLEKLLISHKRIVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQDIV 329
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 330 VITTKGEAICTAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQ 389
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+G LDKHGK N TP +W V
Sbjct: 390 KGLLDKHGKPNNSTPSDWKEGYV 412
>gi|410083104|ref|XP_003959130.1| hypothetical protein KAFR_0I02150 [Kazachstania africana CBS 2517]
gi|372465720|emb|CCF59995.1| hypothetical protein KAFR_0I02150 [Kazachstania africana CBS 2517]
Length = 463
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/385 (70%), Positives = 332/385 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+ S +TS+WP+LLK+YD+L VR+GHYTP+P G SPLKR L YI G+I
Sbjct: 2 AQEFVIKPEDAGASANTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLH+ + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R
Sbjct: 122 YVCIVRLHEALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRG 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR+++ PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIVQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M+T +ATCDHGVVAR+KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLITTKGEAIAVAIAQMSTVDLATCDHGVVARVKRCIMERDLYPRRWGLGPVAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK G++NE TP++W ++ V
Sbjct: 362 KADGKLDKFGRVNENTPEDWKKSYV 386
>gi|323434335|gb|ADX66370.1| dyskeratosis congenita 1 isoform 3 [Homo sapiens]
Length = 420
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/385 (71%), Positives = 337/385 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
I +G LDKHGK + TP W + V
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYV 417
>gi|302911071|ref|XP_003050412.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731349|gb|EEU44699.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 486
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 285/379 (75%), Positives = 331/379 (87%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
++ IKPQ+ TP++DTS WP+LLKNYD+L VRTGH+TP+PNG SPLKR L YI G+INL
Sbjct: 16 EYTIKPQATTPALDTSSWPLLLKNYDKLLVRTGHFTPIPNGCSPLKRDLKQYISSGVINL 75
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV
Sbjct: 76 DKPSNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYV 135
Query: 168 CVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRHL
Sbjct: 136 AVIRLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRHL 195
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E +VT+HDV+DAQW
Sbjct: 196 GVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDETKGLVTLHDVLDAQWQM 255
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLTSYKRLVVKD+ VNA+CYGAKLM+PGLLR+E IE EEV
Sbjct: 256 DNTRDESYLRKVISPLETLLTSYKRLVVKDSAVNAVCYGAKLMLPGLLRYEAAIEHHEEV 315
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 316 VLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 375
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK G+ N+ TP +W
Sbjct: 376 ADGKLDKFGRPNDATPAKW 394
>gi|156085176|ref|XP_001610071.1| rRNA pseudouridine synthase family protein [Babesia bovis T2Bo]
gi|154797323|gb|EDO06503.1| rRNA pseudouridine synthase, putative family protein [Babesia
bovis]
Length = 418
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 270/387 (69%), Positives = 323/387 (83%), Gaps = 1/387 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKPQ P IDTS+WP+LLKNYD+LNVRTGHYTPLP+G SPL R L +YI+YG INL
Sbjct: 6 DFVIKPQKAAPPIDTSEWPLLLKNYDKLNVRTGHYTPLPHGSSPLCRDLRNYIKYGFINL 65
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHE V+WIKRILR EKTGHSGTLDPKVTG L+VCIDRATRLVKSQQ GKEYV
Sbjct: 66 DKPANPSSHETVSWIKRILRCEKTGHSGTLDPKVTGVLLVCIDRATRLVKSQQTHGKEYV 125
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ + H KV +AL+ L+G +FQRPPLISAVKRQLR+RTI+E+K+L+YD R +
Sbjct: 126 AIVKFHSLPESRFKVEKALQTLSGCLFQRPPLISAVKRQLRVRTIHETKILDYDESRCMA 185
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
FW+ CEAGTY+RT+C+HLGL+LG G HMQELRRV+SG + E DNMVTMHDV+DAQ+L D
Sbjct: 186 TFWVRCEAGTYIRTLCIHLGLLLGCGAHMQELRRVKSGHISEYDNMVTMHDVLDAQYLLD 245
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N DE+Y+RRVI PLE LLT YKR+VVKD+ VNAICYGAKLM+PG+LRFEN IE+ E++V
Sbjct: 246 NTNDESYIRRVISPLERLLTDYKRIVVKDSCVNAICYGAKLMVPGVLRFENGIELHEQIV 305
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+ALGIA+M TAV+A+ DHGVV+ IKRV+MDRDTY +WG GPRA+ KK+L +
Sbjct: 306 LITTKGEAIALGIAQMPTAVIASVDHGVVSVIKRVIMDRDTYSLRWGFGPRATEKKRLQS 365
Query: 408 EGKLDKHGKLNEKTPQEWARN-VVLPP 433
G LD+HGK NEKTP W ++ LPP
Sbjct: 366 AGLLDEHGKPNEKTPASWTKSEGYLPP 392
>gi|402222167|gb|EJU02234.1| centromere/microtubule binding protein cbf5 [Dacryopinax sp.
DJM-731 SS1]
Length = 494
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/428 (68%), Positives = 348/428 (81%), Gaps = 7/428 (1%)
Query: 44 ATAK---DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYI 100
ATA+ DF +KP+ P++DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR L YI
Sbjct: 12 ATAQHQGDFTVKPEPVLPTLDTSQWPLLLKNYDKLLVRSAHFTPIPSGSSPLKRDLTSYI 71
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
+ G+INLDKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ
Sbjct: 72 KSGVINLDKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQ 131
Query: 161 GAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
GAGKEYVCV RLH + + RALE LTGA+FQRPPLISAVKRQLR+RTI+ES+LLE+
Sbjct: 132 GAGKEYVCVLRLHSALSSEKTLPRALETLTGALFQRPPLISAVKRQLRVRTIHESRLLEF 191
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
D R+L VFW+SCEAGTY+RT+CVHLGL+LGVGGHM+ELRRVRSG L END MVTMHDV+
Sbjct: 192 DNQRNLGVFWVSCEAGTYIRTLCVHLGLLLGVGGHMEELRRVRSGALSENDEMVTMHDVL 251
Query: 281 DAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDI 340
DAQW+YDN RDE+YLRRVI PLE LLT YKR+VVKD+ V A+CYGAKLMIPGLLR+E DI
Sbjct: 252 DAQWVYDNTRDESYLRRVIRPLECLLTGYKRIVVKDSAVTAVCYGAKLMIPGLLRYEADI 311
Query: 341 EVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAS 400
EV EEVVLMTTKGEA+ALGIA M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP+A
Sbjct: 312 EVHEEVVLMTTKGEAIALGIALMSTVELATCDHGVVAKVKRCIMERDLYPRRWGLGPKAV 371
Query: 401 MKKKLIAEGKLDKHGK-LNEKTPQEWARNV--VLPPGGDSVVASLAAAAEQTVAEKETAG 457
KKK++ +G LDKHG+ + KTP++W P GD VV + A E
Sbjct: 372 EKKKMVKDGLLDKHGRNIEGKTPKKWVEEYKDFTRPEGD-VVPAPAGTISTEPPVPEAGK 430
Query: 458 VKKRKLDA 465
KKRK D
Sbjct: 431 EKKRKRDG 438
>gi|393244621|gb|EJD52133.1| putative rRNA pseudouridine synthase [Auricularia delicata
TFB-10046 SS5]
Length = 514
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 300/479 (62%), Positives = 361/479 (75%), Gaps = 47/479 (9%)
Query: 48 DFIIKPQ--SFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
DF +KP+ S TP +DTS WP+LLKNYD+L VRT H+TP+P G SPLKR + Y++ G+I
Sbjct: 18 DFAVKPEPSSATPKLDTSNWPLLLKNYDKLLVRTAHFTPIPMGCSPLKRDITSYVKSGVI 77
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAW++RILRV+KTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKE
Sbjct: 78 NLDKPSNPSSHEVVAWLRRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 137
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVCV RLH +PD + RA+E LTGA+FQRPPLISAVKRQLR+RTIY S L+E+D DR+
Sbjct: 138 YVCVLRLHAALPDPMALPRAMETLTGALFQRPPLISAVKRQLRVRTIYSSTLIEFDNDRN 197
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VF +SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L E+D MVTMHDV+DAQW+
Sbjct: 198 LAVFHVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALSESDEMVTMHDVLDAQWM 257
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+DI + EE
Sbjct: 258 YDNTRDESYLRRVIKPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEDDIALHEE 317
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+AL IA+MTT +ATC HGVVA++KR +M+RDTYPR+WGLGP+A KKKL
Sbjct: 318 VVLMTTKGEAIALAIAQMTTVELATCSHGVVAKVKRCIMERDTYPRRWGLGPKALEKKKL 377
Query: 406 IAEGKLDKHG-KLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +GKL K G K++ TP +W+++ V A+A TVAE A
Sbjct: 378 IKDGKLSKFGEKIDGVTPADWSKDYV------DYNRDPEASASATVAETADA-------- 423
Query: 465 ASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGG 523
KV + EE+EVE K+KK+K+K + +GG
Sbjct: 424 ------------------------------KVTKTTVEEVEVEPKDKKRKRKSEAGDGG 452
>gi|426201538|gb|EKV51461.1| hypothetical protein AGABI2DRAFT_182425 [Agaricus bisporus var.
bisporus H97]
Length = 510
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/394 (70%), Positives = 338/394 (85%), Gaps = 4/394 (1%)
Query: 41 DNNATAK---DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLV 97
D A+A+ D+ IK ++ P +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR +
Sbjct: 8 DQVASAQLEGDYTIKSENSAPKLDTSQWPLLLKNYDKLLVRSSHFTPIPSGCSPLKRDIT 67
Query: 98 DYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 157
+YI+ G+INLDKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVK
Sbjct: 68 NYIKSGVINLDKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVK 127
Query: 158 SQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKL 217
SQQGAGKEYVCV RLH +P+ A + R L+ LTGA+FQRPPLISAVKRQLRIRTI+ESKL
Sbjct: 128 SQQGAGKEYVCVLRLHAPLPNPAALPRTLQTLTGALFQRPPLISAVKRQLRIRTIHESKL 187
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMH 277
E+D R+L VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + END++VTMH
Sbjct: 188 FEFDEKRNLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTMH 247
Query: 278 DVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
DV+DAQW+YDN RDE+YLRR + PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E
Sbjct: 248 DVLDAQWMYDNTRDESYLRRAVRPLESLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYE 307
Query: 338 NDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGP 397
DI + EE+VLMTTKGEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP
Sbjct: 308 ADISLNEEIVLMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGP 367
Query: 398 RASMKKKLIAEGKLDKHG-KLNEKTPQEWARNVV 430
A KKK++ +GKL KHG K+ TP EW+R+ V
Sbjct: 368 VALQKKKMVKDGKLGKHGEKIVGVTPTEWSRDYV 401
>gi|400600982|gb|EJP68650.1| centromere/microtubule-binding protein cbf5 [Beauveria bassiana
ARSEF 2860]
Length = 826
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 282/380 (74%), Positives = 333/380 (87%), Gaps = 1/380 (0%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+D+ IKPQ+ TP++DTS WP+LLKNYD+L VRTGH+TP+PNG SPLKR + YI G+IN
Sbjct: 355 EDYSIKPQASTPALDTSNWPLLLKNYDKLLVRTGHFTPIPNGCSPLKRDIKSYISSGVIN 414
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEY
Sbjct: 415 LDKPSNPSSHEVVAWVKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEY 474
Query: 167 VCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
V V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRH
Sbjct: 475 VAVVRLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRH 534
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E+ +VT+HDV+DAQW
Sbjct: 535 LGVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDESKQLVTLHDVLDAQWT 594
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
+DN RDE+YLR+VI PLE LLTSYKRLVVKD+ VNA+CYGAKLM+PGLLR+E+ IE EE
Sbjct: 595 HDNTRDESYLRKVISPLETLLTSYKRLVVKDSAVNAVCYGAKLMLPGLLRYESGIEHHEE 654
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+VLMTTKGEA+AL A+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 655 IVLMTTKGEAIALAYAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPVAQEKKKL 714
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK G+ N+ TP +W
Sbjct: 715 KADGKLDKFGRANDATPAKW 734
>gi|4406198|gb|AAD19897.1| minifly protein [Drosophila melanogaster]
Length = 508
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 269/395 (68%), Positives = 328/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYT L +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTRLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 415
>gi|452982351|gb|EME82110.1| hypothetical protein MYCFIDRAFT_215584 [Pseudocercospora fijiensis
CIRAD86]
Length = 509
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/377 (74%), Positives = 331/377 (87%), Gaps = 1/377 (0%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
IIKP++ TP+++TS WP+LLKN+D+L VRTGH+TP+P G +PLKR L YI G+INLDK
Sbjct: 14 IIKPEAATPNVNTSDWPLLLKNWDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINLDK 73
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYVCV
Sbjct: 74 PSNPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCV 133
Query: 170 ARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
RLHDK+P A++ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKLLE+D DR L V
Sbjct: 134 LRLHDKLPGGQAQLARALETLTGALFQRPPLISAVKRQLRIRTIHESKLLEFDNDRQLAV 193
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E D MVT+HD +DAQWLYDN
Sbjct: 194 FWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDEQDGMVTLHDCLDAQWLYDN 253
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
RDE+YLR VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ IEV EEVVL
Sbjct: 254 QRDESYLRTVIKPLETLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRYESGIEVHEEVVL 313
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+AL IA+M+T +++CDHG+VA++KR +M+RD YPR+WG+GP A+ KKK+
Sbjct: 314 ITTKGEAIALAIAQMSTVELSSCDHGIVAKVKRCIMERDLYPRRWGMGPIATEKKKMKES 373
Query: 409 GKLDKHGKLNEKTPQEW 425
GKLDK G+ NE TP W
Sbjct: 374 GKLDKFGRPNEATPASW 390
>gi|300175686|emb|CBK21229.2| unnamed protein product [Blastocystis hominis]
Length = 459
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/380 (72%), Positives = 333/380 (87%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F+IK +S +P +DTSQWP+LLKNYD+LNVR+ HYTP+P G SPL RPL DYI YG INL
Sbjct: 29 EFVIKSESKSPELDTSQWPLLLKNYDKLNVRSYHYTPIPVGNSPLNRPLKDYISYGCINL 88
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KRILR E+TGHSGTLDPKVTG LI+CIDRATRL KSQQGAGKEYV
Sbjct: 89 DKPANPSSHEVVAWVKRILRCERTGHSGTLDPKVTGCLIICIDRATRLAKSQQGAGKEYV 148
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + + ++ +ALE LTGA+FQRPPLI+AVKRQLRIRTIYESKL+EYD L
Sbjct: 149 SIVRLHNAIDNEMQLKQALEKLTGALFQRPPLIAAVKRQLRIRTIYESKLIEYDPKEQLG 208
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
FW+SC+AGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + END +VTMHDV+DAQW+YD
Sbjct: 209 AFWVSCQAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGNITENDGIVTMHDVLDAQWVYD 268
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
RDE+YLRRV+ PLE+LL +K++VVKD+ VNAICYGAKLMIPGLLRF + IE+G+EVV
Sbjct: 269 TRRDESYLRRVVRPLEILLLKHKKVVVKDSAVNAICYGAKLMIPGLLRFSDGIEIGDEVV 328
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+G+A+MTTAVMA+CDHG+V ++KRV+M+RDTYPR+WGLGP A KK++IA
Sbjct: 329 LMTTKGEAIAIGVAQMTTAVMASCDHGIVCKLKRVIMERDTYPRRWGLGPVAQKKKQMIA 388
Query: 408 EGKLDKHGKLNEKTPQEWAR 427
G LDK+GK NEKTP EW +
Sbjct: 389 SGLLDKNGKPNEKTPAEWYK 408
>gi|300122324|emb|CBK22896.2| unnamed protein product [Blastocystis hominis]
Length = 474
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/380 (72%), Positives = 333/380 (87%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F+IK +S +P +DTSQWP+LLKNYD+LNVR+ HYTP+P G SPL RPL DYI YG INL
Sbjct: 29 EFVIKSESKSPELDTSQWPLLLKNYDKLNVRSYHYTPIPVGNSPLNRPLKDYISYGCINL 88
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KRILR E+TGHSGTLDPKVTG LI+CIDRATRL KSQQGAGKEYV
Sbjct: 89 DKPANPSSHEVVAWVKRILRCERTGHSGTLDPKVTGCLIICIDRATRLAKSQQGAGKEYV 148
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ RLH+ + + ++ +ALE LTGA+FQRPPLI+AVKRQLRIRTIYESKL+EYD L
Sbjct: 149 SIVRLHNAIDNEMQLKQALEKLTGALFQRPPLIAAVKRQLRIRTIYESKLIEYDPKEQLG 208
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
FW+SC+AGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + END +VTMHDV+DAQW+YD
Sbjct: 209 AFWVSCQAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGNITENDGIVTMHDVLDAQWVYD 268
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
RDE+YLRRV+ PLE+LL +K++VVKD+ VNAICYGAKLMIPGLLRF + IE+G+EVV
Sbjct: 269 TRRDESYLRRVVRPLEILLLKHKKVVVKDSAVNAICYGAKLMIPGLLRFSDGIEIGDEVV 328
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+A+G+A+MTTAVMA+CDHG+V ++KRV+M+RDTYPR+WGLGP A KK++IA
Sbjct: 329 LMTTKGEAIAIGVAQMTTAVMASCDHGIVCKLKRVIMERDTYPRRWGLGPVAQKKKQMIA 388
Query: 408 EGKLDKHGKLNEKTPQEWAR 427
G LDK+GK NEKTP EW +
Sbjct: 389 SGLLDKNGKPNEKTPAEWYK 408
>gi|5542014|emb|CAB51168.1| dyskerin [Homo sapiens]
Length = 524
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 276/405 (68%), Positives = 340/405 (83%), Gaps = 13/405 (3%)
Query: 26 DAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPL 85
D A + A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL
Sbjct: 26 DVAEIQ-------------HAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPL 72
Query: 86 PNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 145
G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG L
Sbjct: 73 ACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCL 132
Query: 146 IVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205
IVCI+RATRLVKSQQ AGKEYV + RLH+ + +++RALE LTGA+FQRPPLI+AVKR
Sbjct: 133 IVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKR 192
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
QLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG
Sbjct: 193 QLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSG 252
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
++ E D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYG
Sbjct: 253 VMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYG 312
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
AK+M+PG+LR+E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+
Sbjct: 313 AKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIME 372
Query: 386 RDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
RDTYPRKWGLGP+AS KK +I +G LDKHGK + TP W + V
Sbjct: 373 RDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYV 417
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/460 (60%), Positives = 343/460 (74%), Gaps = 55/460 (11%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
+K+ LD
Sbjct: 393 ----------------------------------------------------IKQGLLDK 400
Query: 466 SG---DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
G DS K+ V+ +KE +V K + AE
Sbjct: 401 HGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAE 440
>gi|213511644|ref|NP_001133521.1| dyskerin [Salmo salar]
gi|209154338|gb|ACI33401.1| H/ACA ribonucleoprotein complex subunit 4 [Salmo salar]
Length = 522
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 282/425 (66%), Positives = 351/425 (82%), Gaps = 15/425 (3%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSI 60
M +VE++ ++K+K KK+ AD D + + DF+IKP+S S+
Sbjct: 1 MADVEMNSAKKQKKKKEKTVAD---------------DEVGDIQESGDFLIKPESKVASL 45
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTSQWP+LLKN+D+LN+RT HYTPLPNG +PLKR + DY+R G INLDKPANPSSHEVVA
Sbjct: 46 DTSQWPLLLKNFDKLNIRTAHYTPLPNGSNPLKRNIQDYVRTGFINLDKPANPSSHEVVA 105
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WI+RILRVEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV + RLH+ + +
Sbjct: 106 WIRRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVGIVRLHNAIENEH 165
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
+AR +E LTGA+FQRPPLI+AVKRQLR+RT+YESKL+EYD +R L +FW+SCEAGTY+R
Sbjct: 166 TLARGIETLTGALFQRPPLIAAVKRQLRVRTVYESKLIEYDPERRLGIFWVSCEAGTYIR 225
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
T+CVHLGL+LGVGG MQELRRVRSG+LGE DN+VTMHDV+DAQW YD+ +DE YLRRVI
Sbjct: 226 TLCVHLGLLLGVGGQMQELRRVRSGVLGERDNLVTMHDVLDAQWQYDHNKDETYLRRVIY 285
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLE LL S+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IE+ +++V++TTKGEA+ +
Sbjct: 286 PLEKLLVSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEMNQDIVVITTKGEAICIAT 345
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I +G LDK GK N+
Sbjct: 346 ALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQKGLLDKRGKANDS 405
Query: 421 TPQEW 425
TP +W
Sbjct: 406 TPSDW 410
>gi|443920908|gb|ELU40730.1| centromere/microtubule binding protein cbf5 [Rhizoctonia solani
AG-1 IA]
Length = 516
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 285/393 (72%), Positives = 338/393 (86%), Gaps = 6/393 (1%)
Query: 44 ATAK---DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYI 100
ATA+ +F IKP++ P +DTSQWP+LLKNYD+L VR+ H+TP+P G SPLKR L YI
Sbjct: 7 ATAQVNGEFSIKPEAKQPQLDTSQWPLLLKNYDKLLVRSSHFTPIPQGCSPLKRDLQSYI 66
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
+ G+INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ
Sbjct: 67 KSGVINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQ 126
Query: 161 GAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
GAGKEYVCV RLHD + + RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKLLE+
Sbjct: 127 GAGKEYVCVLRLHDALESEKALPRALETLTGALFQRPPLISAVKRQLRIRTIHESKLLEF 186
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
D R+L VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + END++VTMHDV+
Sbjct: 187 DNQRNLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSENDDIVTMHDVL 246
Query: 281 DAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF--EN 338
DAQW YDN RDE+YLRRVI PLE L+ YKR+VVKD+ VNA+CYGAKLMIPGLLR+ +
Sbjct: 247 DAQWTYDNTRDESYLRRVIRPLECLMVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYGEQA 306
Query: 339 DIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPR 398
+IEV EEVVLMTTKGEA+AL IA+M+TA +A+CDHGVVA++KR +M+RDTYPR+WGLGPR
Sbjct: 307 NIEVHEEVVLMTTKGEAIALAIAQMSTADLASCDHGVVAKVKRCIMERDTYPRRWGLGPR 366
Query: 399 ASMKKKLIAEGKLDKHGK-LNEKTPQEWARNVV 430
A KKK++ +GKLDKHG+ + TP W ++ V
Sbjct: 367 ALEKKKMVKDGKLDKHGRAIQGVTPASWTKDYV 399
>gi|395754664|ref|XP_002832372.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Pongo abelii]
Length = 520
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/418 (67%), Positives = 346/418 (82%), Gaps = 18/418 (4%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 39 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 98
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 99 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 158
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 159 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 218
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 219 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 278
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 279 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 338
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 339 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 398
Query: 406 IAEGKLDKHGKLNEKTPQEWARN---------------VVLPPGGDSVVASLAAAAEQ 448
I +G LDKHGK + TP W + VV P VVA A A++
Sbjct: 399 IKQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAP---QVVAEAAKTAKR 453
>gi|385304244|gb|EIF48269.1| centromere microtubule-binding protein cbf5 [Dekkera bruxellensis
AWRI1499]
Length = 489
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 274/382 (71%), Positives = 327/382 (85%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKP P+ DTS WP+LLKNYD+L VR HYTP+P G SPL R + DY+ G+INLD
Sbjct: 5 YMIKPAKSAPAADTSDWPLLLKNYDQLLVRCSHYTPIPAGSSPLNRNIKDYVSSGVINLD 64
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILRV+KTGHSGTLDPKVTG LIVCIDRATRLVK+QQGAGKEYVC
Sbjct: 65 KPSNPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVC 124
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
V RLHD + D ++ RALE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R L V
Sbjct: 125 VLRLHDALKDEKQMGRALENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRGLGV 184
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+YDN
Sbjct: 185 FWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGQLTENDNMVTLHDVMDAQWVYDN 244
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE YLR+VI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E +I++ +EVV+
Sbjct: 245 SKDETYLRKVISPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEKNIDLYDEVVM 304
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+A+GIA+M+T + TCDHGVVA +KR +M+RDTYPRKWG+GP A KKKLI E
Sbjct: 305 ITTKGEAIAIGIAQMSTVDLTTCDHGVVATVKRCIMERDTYPRKWGVGPIALKKKKLIKE 364
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
KLDK+G++NEKTP+ ++ V
Sbjct: 365 EKLDKYGRVNEKTPESXKKDYV 386
>gi|410730545|ref|XP_003980093.1| hypothetical protein NDAI_0G04320 [Naumovozyma dairenensis CBS 421]
gi|401780270|emb|CCK73417.1| hypothetical protein NDAI_0G04320 [Naumovozyma dairenensis CBS 421]
Length = 483
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 269/383 (70%), Positives = 330/383 (86%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+KDF+I P++ + +TS+WP+LLK+YD+L VR+GHYTP+P G +PLKR L YI G+I
Sbjct: 2 SKDFVITPEAAGSTANTSEWPLLLKDYDKLLVRSGHYTPIPTGSTPLKRDLKSYISSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+
Sbjct: 122 YVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVH+G++LGVGGHMQELRRVRSG L ENDNMVT+HDV+DAQW+
Sbjct: 182 LGVFWASCEAGTYMRTLCVHMGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVLDAQWV 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+ IA+M+T +ATCDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 302 VVLITTKGEAIAVAIAQMSTVDLATCDHGVVATVKRCIMERDLYPRRWGLGPIAQKKKQM 361
Query: 406 IAEGKLDKHGKLNEKTPQEWARN 428
A+GKLDK G+ NE TP++W ++
Sbjct: 362 KADGKLDKFGRTNENTPEDWKKS 384
>gi|326480146|gb|EGE04156.1| centromere/microtubule binding protein CBF5 [Trichophyton equinum
CBS 127.97]
Length = 477
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/379 (71%), Positives = 317/379 (83%), Gaps = 18/379 (4%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ P I TS+WP+LLKNYD+L VRT H+TP+PNG +PLKR L YI G+INL
Sbjct: 12 DYSIKPEAVAPPIPTSEWPLLLKNYDKLLVRTSHFTPIPNGCTPLKRDLKSYISSGVINL 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 72 DKPSNPSSHEVVAWMKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 131
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE L+GA+FQRPPLISAVKRQLRIRTIYESKL E+D DRHL
Sbjct: 132 CVIRLHDKIPGGEAQFARALETLSGALFQRPPLISAVKRQLRIRTIYESKLYEFDNDRHL 191
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 192 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 251
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN+RDE+YLR+VI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+ EEV
Sbjct: 252 DNHRDESYLRKVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEIYEEV 311
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A +VA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 312 VLMTTKGEAIA-----------------IVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 354
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ N TP +W
Sbjct: 355 ADGKLDKYGRTNASTPAKW 373
>gi|281183100|ref|NP_001162280.1| H/ACA ribonucleoprotein complex subunit 4 [Papio anubis]
gi|386781757|ref|NP_001247923.1| H/ACA ribonucleoprotein complex subunit 4 [Macaca mulatta]
gi|160213472|gb|ABX11000.1| dyskeratosis congenita 1, dyskerin (predicted) [Papio anubis]
gi|380810210|gb|AFE76980.1| H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Macaca
mulatta]
gi|383416265|gb|AFH31346.1| H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Macaca
mulatta]
gi|384945618|gb|AFI36414.1| H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Macaca
mulatta]
Length = 514
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/463 (62%), Positives = 359/463 (77%), Gaps = 43/463 (9%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
I +G LDK+GK E TP W K+ +D
Sbjct: 393 IKQGLLDKYGKPTESTPATW---------------------------------KQEYVDY 419
Query: 466 SGDSPALNAKKAKVEEVVE-----VEKEETVKVKKVKEDEAEE 503
S AKK V EVV+ E +T K K+ E E++E
Sbjct: 420 SE-----TAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDE 457
>gi|358056117|dbj|GAA97857.1| hypothetical protein E5Q_04537 [Mixia osmundae IAM 14324]
Length = 518
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 287/433 (66%), Positives = 339/433 (78%), Gaps = 5/433 (1%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F I P+S P + TS WP+LLKNYD+L VR+ H+TP+P+G SPLKR L YI+ G+INLD
Sbjct: 20 FQISPESGPPKLQTSDWPLLLKNYDKLLVRSAHFTPIPSGSSPLKRDLASYIQSGVINLD 79
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWI+RILR EKTGHSGTLDPKVTG L VCIDRATRLVKSQQGAGKEYVC
Sbjct: 80 KPSNPSSHEVVAWIRRILRCEKTGHSGTLDPKVTGCLTVCIDRATRLVKSQQGAGKEYVC 139
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
V RLHD + ++RALE LTGA+FQRPPLISAVKRQLRIRTIYE KLLE+D RHL V
Sbjct: 140 VLRLHDSLQSEKALSRALETLTGALFQRPPLISAVKRQLRIRTIYEIKLLEFDNARHLGV 199
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E D+MVTMHDV+DAQWLYDN
Sbjct: 200 FWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSEADDMVTMHDVLDAQWLYDN 259
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
RDE+YLRRVI PLE LLT+YKR+VVKD+ V A+ YGA+LM+PG+LR+E IE+ EE+VL
Sbjct: 260 TRDESYLRRVIRPLESLLTTYKRIVVKDSAVAALTYGAQLMLPGVLRYEAGIELHEEIVL 319
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+ L A MTT ++TCDHGVVA+IKRV+M RDTYPR WGLGP+A KKK+I
Sbjct: 320 MTTKGEAICLAYARMTTVELSTCDHGVVAKIKRVIMSRDTYPRAWGLGPKAQEKKKMIQT 379
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
G+LDKHG+ NE TP W + D + AA E T+ + A D + +
Sbjct: 380 GELDKHGRKNENTPATWTKEYT-----DYTIQGEGAALEATIPAQAEASTSAPTADVTME 434
Query: 469 SPALNAKKAKVEE 481
+KK K E+
Sbjct: 435 ESPKKSKKRKTED 447
>gi|448112515|ref|XP_004202116.1| Piso0_001595 [Millerozyma farinosa CBS 7064]
gi|359465105|emb|CCE88810.1| Piso0_001595 [Millerozyma farinosa CBS 7064]
Length = 479
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 269/380 (70%), Positives = 331/380 (87%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+++ IIKP++ PS DTS WP+LLK+YD+L VR+GHYTP+P G SPLKR L Y+ G+I
Sbjct: 2 SEEHIIKPEAVAPSNDTSSWPLLLKDYDKLLVRSGHYTPIPTGCSPLKRDLKSYVSSGVI 61
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKE
Sbjct: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ +LHD++ D + ++LE LTGA+FQRPPLISAVKRQLR+RTIY+SKL+E+D R
Sbjct: 122 YVCIVKLHDELKDAKDLGKSLENLTGALFQRPPLISAVKRQLRVRTIYDSKLIEFDNKRG 181
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + EN N+VT+HDVMDAQ++
Sbjct: 182 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMDENCNLVTLHDVMDAQYI 241
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E+ IE+ +E
Sbjct: 242 YDNTRDESYLRKIIQPLETLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEDGIELYDE 301
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVL+TTKGEA+A+G+A+MTT + +CDHGVVA++KR +M+RDTYPR+WGLGP A KK+L
Sbjct: 302 VVLITTKGEAIAIGVAQMTTVDLQSCDHGVVAKVKRCIMERDTYPRRWGLGPVAQKKKQL 361
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ NE TPQ W
Sbjct: 362 KADGKLDKYGRANENTPQSW 381
>gi|398393878|ref|XP_003850398.1| hypothetical protein MYCGRDRAFT_74715 [Zymoseptoria tritici IPO323]
gi|339470276|gb|EGP85374.1| hypothetical protein MYCGRDRAFT_74715 [Zymoseptoria tritici IPO323]
Length = 486
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/390 (72%), Positives = 337/390 (86%), Gaps = 6/390 (1%)
Query: 37 ADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPL 96
A +D++N IIKP+ +PSI+TS WP+LLKN+D+L VRTGH+TP+P G +PL+R L
Sbjct: 8 AASDEDNQ-----IIKPEQISPSINTSDWPLLLKNWDQLLVRTGHFTPIPAGCTPLRRDL 62
Query: 97 VDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLV 156
YI G+INLDKP+NPSSHEVVAW+KRILRVE+TGHSGTLDPKVTG LIVCIDRATRLV
Sbjct: 63 KSYISSGVINLDKPSNPSSHEVVAWLKRILRVERTGHSGTLDPKVTGCLIVCIDRATRLV 122
Query: 157 KSQQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
KSQQGAGKEYVCV RLHDK+P A++ARALE LTGA+FQRPPLISAVKRQLRIRTI+ES
Sbjct: 123 KSQQGAGKEYVCVLRLHDKLPGGEAQLARALETLTGALFQRPPLISAVKRQLRIRTIHES 182
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL++D DR L VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E + MVT
Sbjct: 183 KLLQFDNDRQLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDEKEGMVT 242
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
+HD +DAQWLYDN RDE+YLR VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR
Sbjct: 243 LHDCLDAQWLYDNQRDESYLRTVIKPLETLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLR 302
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IEV EEVVL+TTKGEA+AL IA+M+T +++CDHGVVA++KR +M+RD YPR+WG+
Sbjct: 303 YESGIEVHEEVVLITTKGEAIALAIAQMSTVELSSCDHGVVAKVKRCIMERDLYPRRWGM 362
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEW 425
GP A+ KKK+ GKLDK+G+ NE TP W
Sbjct: 363 GPVATEKKKMKESGKLDKYGRSNEATPAAW 392
>gi|409051461|gb|EKM60937.1| hypothetical protein PHACADRAFT_247173 [Phanerochaete carnosa
HHB-10118-sp]
Length = 502
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 278/384 (72%), Positives = 330/384 (85%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F IK + P +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR + Y++ G+INL
Sbjct: 20 EFSIKSEDSQPKLDTSQWPLLLKNYDKLLVRSSHFTPIPSGCSPLKRDITSYVKSGVINL 79
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 80 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 139
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLH + + + + RA++ LTGA+FQRPPLISAVKRQLRIRTIYESKLLE+D R+L
Sbjct: 140 AVLRLHSALSESSALPRAIQTLTGALFQRPPLISAVKRQLRIRTIYESKLLEFDEKRNLA 199
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L END MVTMHDV+DAQW YD
Sbjct: 200 IFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALSENDEMVTMHDVLDAQWTYD 259
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRR I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI + EEVV
Sbjct: 260 NTRDESYLRRAIRPLESLLIGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADIALNEEVV 319
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP+A KKKL+
Sbjct: 320 LMTTKGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPKAMEKKKLVK 379
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV 430
EGKL KHG K+ TP EW+++ V
Sbjct: 380 EGKLGKHGEKIEGVTPAEWSKDYV 403
>gi|429859279|gb|ELA34067.1| centromere microtubule binding protein cbf5 [Colletotrichum
gloeosporioides Nara gc5]
Length = 471
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/438 (66%), Positives = 353/438 (80%), Gaps = 27/438 (6%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDR-------------LNVRTGHYTPLPNGYSPLK 93
++F IKPQ+ P +DTS WP+LLKNYD+ L VRTGH+TP+P G SPLK
Sbjct: 12 EEFAIKPQAAVPQLDTSSWPLLLKNYDKRKFPFPLDTERMSLLVRTGHFTPIPAGCSPLK 71
Query: 94 RPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRAT 153
R + YI G+INLDKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVC+DRAT
Sbjct: 72 RDIKSYISSGVINLDKPSNPSSHEVVAWVKRMLRVEKTGHSGTLDPKVTGCLIVCVDRAT 131
Query: 154 RLVKSQQGAGKEYVCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
RLVKSQQGAGKEYV V RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI
Sbjct: 132 RLVKSQQGAGKEYVAVIRLHDKLPGGQAQFARALETLTGALFQRPPLISAVKRQLRIRTI 191
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YE+KL+E+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E+
Sbjct: 192 YETKLIEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDESQG 251
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
MVT+HDV+DAQW+ DN RDE+YLR+VI PLE LLT YKR+VVKD+ VNA+CYGAKLM+PG
Sbjct: 252 MVTLHDVLDAQWMMDNTRDESYLRKVISPLETLLTGYKRIVVKDSAVNAVCYGAKLMLPG 311
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
LLR+E+ IEV +EVVLMTTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+
Sbjct: 312 LLRYESAIEVHDEVVLMTTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRR 371
Query: 393 WGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAE 452
WGLGP AS KKK+ A+GKLDK G+ NE TP +W VV +++ + T A
Sbjct: 372 WGLGPLASEKKKMKADGKLDKFGRPNEATPAKW-----------KVVETVSTSTVVTPAN 420
Query: 453 KETAGVKKRKLDASGDSP 470
E G K++K + G++P
Sbjct: 421 NEEDGKKRKKHE--GETP 436
>gi|355705303|gb|EHH31228.1| hypothetical protein EGK_21116 [Macaca mulatta]
Length = 597
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/463 (62%), Positives = 359/463 (77%), Gaps = 43/463 (9%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 116 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 175
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 176 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 235
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 236 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 295
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 296 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 355
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 356 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 415
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 416 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 475
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
I +G LDK+GK E TP W K+ +D
Sbjct: 476 IKQGLLDKYGKPTESTPATW---------------------------------KQEYVDY 502
Query: 466 SGDSPALNAKKAKVEEVVE-----VEKEETVKVKKVKEDEAEE 503
S AKK V EVV+ E +T K K+ E E++E
Sbjct: 503 SE-----TAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDE 540
>gi|340904971|gb|EGS17339.1| centromere/microtubule binding protein cbf5-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 1010
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 268/384 (69%), Positives = 322/384 (83%), Gaps = 3/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPN-GYSPLKRPLVDYIRYGIIN 106
+FIIKP++ +DTS WP LLKNYD++ +RT H+TP+P+ G +P R + Y+ G+IN
Sbjct: 542 EFIIKPENTKAEVDTSNWPGLLKNYDKMLIRTSHFTPIPDHGSAPWSRDIKSYVSSGVIN 601
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILRV+KTGHSGTLDPKVTG LIVCIDRATRLVK+QQGAGKEY
Sbjct: 602 LDKPSNPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEY 661
Query: 167 VCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
VC R HD VP A+ALE LTGA+FQRPPLISAVKRQLRIRTI++S+LLE+D +RH
Sbjct: 662 VCCIRFHDTVPGGEPAFAKALETLTGALFQRPPLISAVKRQLRIRTIHKSRLLEFDNERH 721
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEND-NMVTMHDVMDAQW 284
L VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG++ E+D ++VT+HDV+DAQW
Sbjct: 722 LGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGVMSEDDGSLVTLHDVLDAQW 781
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
YDN DEA LR+VI PLE LL +YKRLVVKDT VNA+CYGAKLMIPGLLR++ IE GE
Sbjct: 782 QYDNNGDEALLRKVIQPLETLLCTYKRLVVKDTAVNAVCYGAKLMIPGLLRYDQGIEQGE 841
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
EVVLMTTKGEA+A+ IA+M +ATCDHG VA++KR +M+RD YPR+WG+GP AS KKK
Sbjct: 842 EVVLMTTKGEAIAIAIAQMGAVELATCDHGCVAKVKRCIMERDLYPRRWGMGPVASEKKK 901
Query: 405 LIAEGKLDKHGKLNEKTPQEWARN 428
L A G LDK+G+ NEKTP W ++
Sbjct: 902 LKASGLLDKYGRPNEKTPASWLQS 925
>gi|452841091|gb|EME43028.1| hypothetical protein DOTSEDRAFT_72429 [Dothistroma septosporum
NZE10]
Length = 499
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 273/378 (72%), Positives = 331/378 (87%), Gaps = 1/378 (0%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
IIKP++ P++DTS WP+LLKN+D+L VRTGH+TP+P G +PL+R L Y+ G+INLD
Sbjct: 9 MIIKPEATAPAVDTSNWPLLLKNWDQLQVRTGHFTPIPAGCTPLRRDLKSYVSSGVINLD 68
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAW+KRILRV++TGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 69 KPSNPSSHEVVAWLKRILRVDRTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVC 128
Query: 169 VARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLH+K+P A++ARALE LTGA+FQRPPLISAVKRQLR+RTIYESKLLE+D DR L
Sbjct: 129 VLRLHEKLPGGEAQLARALETLTGALFQRPPLISAVKRQLRVRTIYESKLLEFDNDRQLA 188
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E++ MVT+HD +DAQWLYD
Sbjct: 189 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMKEDETMVTLHDCLDAQWLYD 248
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR VI PLE LLT YKR+VVKD+ VNA+CYGAKLMIPGLLR+E+ IEV EEVV
Sbjct: 249 NQRDESYLRTVIKPLETLLTGYKRIVVKDSAVNAVCYGAKLMIPGLLRYESGIEVHEEVV 308
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+ IA+M+T +++CDHG+VA++KR +M+RD YPR+WG+GP A+ KKK+
Sbjct: 309 LITTKGEAIAIAIAQMSTVELSSCDHGIVAKVKRCIMERDLYPRRWGMGPVATEKKKMKE 368
Query: 408 EGKLDKHGKLNEKTPQEW 425
GKLDK+G+ NE TP W
Sbjct: 369 SGKLDKYGRTNEATPASW 386
>gi|340374276|ref|XP_003385664.1| PREDICTED: centromere/microtubule-binding protein cbf5-like
[Amphimedon queenslandica]
Length = 491
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/394 (68%), Positives = 322/394 (81%), Gaps = 3/394 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A DFIIKPQS TP +DTS+WP+LLKNY ++ VRTGHYTPL G PL+RP+ DY+++G I
Sbjct: 18 AGDFIIKPQS-TPPLDTSEWPLLLKNYHKMVVRTGHYTPLETGCPPLRRPIGDYVKHGFI 76
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDP+VTG LIVCIDR TRLVKSQQGAGKE
Sbjct: 77 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPQVTGCLIVCIDRTTRLVKSQQGAGKE 136
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVCV + H + + + + + L+ + G++FQRPPLISAVKRQLRIRTIYE+KLLEYD RH
Sbjct: 137 YVCVVKFHKEAKE-SDIVKILQTMVGSLFQRPPLISAVKRQLRIRTIYENKLLEYDDQRH 195
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL++GVG HM ELRRVRSGI END++VTMHDV+DAQW
Sbjct: 196 LGVFWVSCEAGTYIRTLCVHLGLMVGVGAHMAELRRVRSGIQSENDDLVTMHDVLDAQWQ 255
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN +DE+YLR+V+ PLE LLTS+KRLV+KD+ VNAICYGAK+ +PG+LRF+ IE E
Sbjct: 256 YDNMKDESYLRKVVKPLEALLTSHKRLVIKDSAVNAICYGAKVQLPGVLRFDEGIEPKME 315
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V+MT KGEAVALGIA ++TA M TCDH A+IKRV+M RD YPRKWGLGP+A KKK
Sbjct: 316 IVIMTPKGEAVALGIALLSTAEMVTCDHNSCAKIKRVIMSRDVYPRKWGLGPKALEKKKK 375
Query: 406 IAEGKLDKHGKLNEKTPQ-EWARNVVLPPGGDSV 438
IA G++ K+ K K P A V PP G V
Sbjct: 376 IAAGEIPKYSKEKNKVPTPPVATTTVSPPAGAPV 409
>gi|294886569|ref|XP_002771763.1| H/ACA ribonucleoprotein complex subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239875525|gb|EER03579.1| H/ACA ribonucleoprotein complex subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 467
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 267/376 (71%), Positives = 320/376 (85%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ D +IKP S +P I+TS+WP+LLKNYDRLNVRTGHYTPLP G SPL RPL ++ YG+
Sbjct: 24 STDCMIKPSSVSPPINTSEWPLLLKNYDRLNVRTGHYTPLPFGCSPLNRPLDQHLLYGVC 83
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP NPSSHEVVAWIKRIL+ EKTGHSGTLDPKV+G L+VC++RATRLVK+QQGAGKE
Sbjct: 84 NLDKPVNPSSHEVVAWIKRILKCEKTGHSGTLDPKVSGCLLVCLNRATRLVKAQQGAGKE 143
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVCV R H A + RAL+ LTGA+FQRPP+I+AVKRQLRIRTIY SKLL+YD ++H
Sbjct: 144 YVCVVRFHADPGGEAAITRALDQLTGALFQRPPVIAAVKRQLRIRTIYWSKLLDYDEEKH 203
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ VF +SCEAGTY+RT+CVH+GL+LGVG HMQELRRVRSG LGE D +VTMHD++DAQ++
Sbjct: 204 MAVFHVSCEAGTYIRTLCVHMGLLLGVGAHMQELRRVRSGNLGEQDQLVTMHDLLDAQYV 263
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
Y++ R E YLRR IMPLE +L SY R+V+KD+ VNA+CYGAKLM+ G+LRFEN IEVG++
Sbjct: 264 YESTRSEEYLRRTIMPLERILVSYPRIVLKDSAVNAVCYGAKLMVVGVLRFENGIEVGKD 323
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEAVALGIA+MTTAV+A+ DHG VA IKRV+M+RDTY +WG GPRAS KKKL
Sbjct: 324 VVLMTTKGEAVALGIAQMTTAVIASVDHGCVATIKRVIMERDTYDSRWGYGPRASEKKKL 383
Query: 406 IAEGKLDKHGKLNEKT 421
I GKLD+ G+ NE T
Sbjct: 384 ILNGKLDEKGRPNENT 399
>gi|164656497|ref|XP_001729376.1| hypothetical protein MGL_3411 [Malassezia globosa CBS 7966]
gi|159103267|gb|EDP42162.1| hypothetical protein MGL_3411 [Malassezia globosa CBS 7966]
Length = 509
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/384 (73%), Positives = 341/384 (88%), Gaps = 1/384 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP + PS+ S+WP+LLK+YD+L VR+ H+TP+P+G +PLKR ++ Y+ G+INL
Sbjct: 6 DFMIKPDNSGPSLRFSEWPLLLKDYDKLLVRSSHFTPIPHGCTPLKRDILTYVSSGVINL 65
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 66 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 125
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDK+ DV+K+ R LE LTGA+FQRPPLISAVKRQLRIRTIYESKLLE+D DRHL
Sbjct: 126 AVLRLHDKLDDVSKLPRVLETLTGALFQRPPLISAVKRQLRIRTIYESKLLEFDNDRHLA 185
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L E+DNMVTMHDV+DAQWLYD
Sbjct: 186 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGALSEDDNMVTMHDVLDAQWLYD 245
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR VI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLRFE++IE+ +EVV
Sbjct: 246 NQRDESYLRHVIRPLESLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRFESNIELNDEVV 305
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+GIA+MTT ++TCDHG+VA++KR +M+RDTYPR+WGLGP+A KKKL+
Sbjct: 306 LITTKGEAIAIGIAQMTTVDLSTCDHGIVAKVKRCIMERDTYPRRWGLGPKALEKKKLVK 365
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV 430
EGKLDKHG ++ TP++W++ V
Sbjct: 366 EGKLDKHGHEIEGVTPEKWSKEYV 389
>gi|84994974|ref|XP_952209.1| centromere/microtubule binding protein [Theileria annulata strain
Ankara]
gi|65302370|emb|CAI74477.1| centromere/microtubule binding protein, putative [Theileria
annulata]
Length = 420
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 263/382 (68%), Positives = 321/382 (84%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
K F+IKP++ +P IDTS WP+LLKNYD+LNVRTGHYTP+P+G SPL R + +Y++YG IN
Sbjct: 5 KVFLIKPEANSPPIDTSNWPLLLKNYDKLNVRTGHYTPMPHGSSPLCRDMKNYMKYGYIN 64
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKPANPSSHEVVAWIKRILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ GKEY
Sbjct: 65 LDKPANPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQSHGKEY 124
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V V + H AK+ + L LTG++FQRPPLISAVKRQLR+RTI+ SKLL+Y+ L
Sbjct: 125 VAVVKFHSSPESGAKIEKVLAELTGSLFQRPPLISAVKRQLRVRTIFASKLLDYNEQEDL 184
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+ CEAGTYVRT+C+H+GL+LG G HMQELRR++SG + E DNMVTMHDV+DAQ+LY
Sbjct: 185 ALFWVKCEAGTYVRTLCIHMGLLLGTGAHMQELRRIKSGNISEYDNMVTMHDVLDAQYLY 244
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
D DE+YLR V+ PLE LLT YKR+VVKD+ VNAICYGAKLMIPG+LRFE +IE+ +E+
Sbjct: 245 DTTADESYLRYVVSPLEQLLTGYKRVVVKDSCVNAICYGAKLMIPGVLRFETNIELHDEI 304
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ALGIA+MT+AV+AT DHG+VA IKRV+MDRDTYP +WG G R++ KK+LI
Sbjct: 305 VMITTKGEAIALGIAQMTSAVIATVDHGIVAVIKRVIMDRDTYPLRWGYGNRSTEKKRLI 364
Query: 407 AEGKLDKHGKLNEKTPQEWARN 428
+ G LDK GK+NE TPQ W N
Sbjct: 365 SLGLLDKDGKVNENTPQSWKNN 386
>gi|71030864|ref|XP_765074.1| rRNA pseudouridine synthase [Theileria parva strain Muguga]
gi|68352030|gb|EAN32791.1| rRNA pseudouridine synthase, putative [Theileria parva]
Length = 421
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 263/382 (68%), Positives = 321/382 (84%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
K F+IKP++ +P IDTS WP+LLKNYD+LNVRTGHYTP+P+G SPL R + +Y++YG IN
Sbjct: 5 KSFLIKPEANSPPIDTSNWPLLLKNYDKLNVRTGHYTPMPHGSSPLCRDMKNYMKYGYIN 64
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKPANPSSHEVVAWIKRILR EKTGHSGTLDPKVTG L+VC++R+TRLVKSQQ GKEY
Sbjct: 65 LDKPANPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGVLLVCLNRSTRLVKSQQTHGKEY 124
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V V + H AKV + L LTGA+FQRPPLISAVKRQLR+RTIY SKLL+Y+ L
Sbjct: 125 VAVVKFHSSPESKAKVEKVLAELTGALFQRPPLISAVKRQLRVRTIYASKLLDYNEQEDL 184
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+ CEAGTYVRT+C+H+GL+LG G HMQELRR++SG + E DNMVTMHDV+D+Q+LY
Sbjct: 185 ALFWVKCEAGTYVRTLCIHMGLLLGTGAHMQELRRIKSGNISEYDNMVTMHDVLDSQYLY 244
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
D DE+YLR V+ PLE LLT +KR+VVKD+ VNAICYGAKLMIPG+LRFE +IE+ +E+
Sbjct: 245 DTTGDESYLRYVVTPLEQLLTGHKRVVVKDSCVNAICYGAKLMIPGVLRFETNIELHDEI 304
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V++TTKGEA+ALGIA+MT+AV+AT DHG+VA IKRV+MDRDTYP +WG G R++ KK+LI
Sbjct: 305 VMITTKGEAIALGIAQMTSAVIATVDHGIVAVIKRVIMDRDTYPLRWGYGNRSAEKKRLI 364
Query: 407 AEGKLDKHGKLNEKTPQEWARN 428
+ G LDK GK+NE TPQ W N
Sbjct: 365 SLGLLDKDGKVNENTPQSWTNN 386
>gi|299470748|emb|CBN79794.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 512
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/463 (61%), Positives = 343/463 (74%), Gaps = 41/463 (8%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+++I+P++ P+++TSQWP+LL+NYD L R HYTPLP+G SPLKR L +YIRYG+INL
Sbjct: 35 EYMIRPETTKPALNTSQWPLLLRNYDDLECRAAHYTPLPSGCSPLKRELKEYIRYGVINL 94
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTG LIVCIDRATRLVK+QQ AGKEYV
Sbjct: 95 DKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYV 154
Query: 168 CVARLHDKVPDVA-----KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
+AR H V A KV +A+ LTGA+FQRPPLISAVKRQLRIRTIY+SKL+EYD
Sbjct: 155 GLARFHSAVDGSAVEARMKVEKAVGLLTGALFQRPPLISAVKRQLRIRTIYDSKLIEYDN 214
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
DRHL +FW+SC+AGTYVRT+CVHLGLI+G GGHMQELRRVRSG+L E N+VTMHDV+DA
Sbjct: 215 DRHLGIFWVSCQAGTYVRTLCVHLGLIVGTGGHMQELRRVRSGVLSEEGNLVTMHDVLDA 274
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
Q +YD +DE+YLRR+IMPLEVLL +YKR+VVKD+ VNA+CYGAKLMIPGLLRF DIE+
Sbjct: 275 QHVYDTKKDESYLRRIIMPLEVLLLTYKRVVVKDSAVNAVCYGAKLMIPGLLRFAADIEI 334
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
EVV++TTKGEA+A+GIA+M + VMATCDHG VA IKRV+M+RDTYPR+WGLG A+ K
Sbjct: 335 NTEVVMVTTKGEAIAVGIAQMISPVMATCDHGTVATIKRVIMERDTYPRRWGLGHVATKK 394
Query: 403 KKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRK 462
K ++ G LDKHG+ N TP++W + L A + A +
Sbjct: 395 KAMVKSGLLDKHGRENASTPKDWKTSY----------HDLTPKAMKKDAGESGDADAGAS 444
Query: 463 LDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIE 505
A+ ++PA D AE E
Sbjct: 445 AGAAQEAPA--------------------------PDAAEGEE 461
>gi|449499294|ref|XP_004176533.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
subunit 4 [Taeniopygia guttata]
Length = 475
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/399 (69%), Positives = 336/399 (84%), Gaps = 5/399 (1%)
Query: 63 SQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWI 122
S W +L N+D+LNVRT HYTPLP+G +PLKR + DY+R G INLDKP+NPSSHEVVAWI
Sbjct: 10 SAW--ILXNFDKLNVRTAHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWI 67
Query: 123 KRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKV 182
+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+ + A++
Sbjct: 68 RRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQL 127
Query: 183 ARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTM 242
ARA+E LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L +FW+SCEAGTY+RT+
Sbjct: 128 ARAIETLTGALFQRPPLIAAVKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTL 187
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
CVHLGL+LGVGG MQELRRVRSGILGE DNMVTMHDV+DAQW YDN +D++YLRRVI+PL
Sbjct: 188 CVHLGLLLGVGGQMQELRRVRSGILGETDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPL 247
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362
E LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEA+ L IA
Sbjct: 248 EKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIELNQEIVVITTKGEAICLAIAL 307
Query: 363 MTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTP 422
MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGK NE TP
Sbjct: 308 MTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNESTP 367
Query: 423 QEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKR 461
+ W V AAA Q V+E + A +KR
Sbjct: 368 ESWKMEYV---DYRDTSRKEAAADHQAVSEVDRAAKRKR 403
>gi|213410128|ref|XP_002175834.1| centromere/microtubule-binding protein cbf5 [Schizosaccharomyces
japonicus yFS275]
gi|212003881|gb|EEB09541.1| centromere/microtubule-binding protein cbf5 [Schizosaccharomyces
japonicus yFS275]
Length = 478
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/393 (71%), Positives = 342/393 (87%), Gaps = 3/393 (0%)
Query: 39 ADDNNATAKDFIIKPQSFTPS-IDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLV 97
+D N++T +F+IKP++ PS +DTS+WP+LLKNYD+L VRTGHYTP+P+G +PLKR +
Sbjct: 2 SDPNSST--EFMIKPEAIGPSQVDTSEWPLLLKNYDKLLVRTGHYTPIPSGCNPLKRDIQ 59
Query: 98 DYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVK 157
Y+ G+INLDKPANPSSHEVVAW+K+ILRVEKTGHSGTLDPKVTG LI+C DRATRLVK
Sbjct: 60 SYVSSGVINLDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVK 119
Query: 158 SQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKL 217
SQQ AGKEYVCV RLHD + + K+A A+E LTGA+FQRPPLISAVKRQLRIR +Y+S L
Sbjct: 120 SQQSAGKEYVCVLRLHDAIDNERKMASAIETLTGALFQRPPLISAVKRQLRIRNVYKSDL 179
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMH 277
+E+D +R+L VFW SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L END++VTMH
Sbjct: 180 IEFDKERNLAVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMH 239
Query: 278 DVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
DV+DAQWLYDN RDE YLRR+I PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E
Sbjct: 240 DVLDAQWLYDNTRDETYLRRIIRPLECLLTNYKRIVVKDSAVNAVCYGAKLMIPGLLRYE 299
Query: 338 NDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGP 397
IEV EEVVLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RDTYPR+WGLGP
Sbjct: 300 AGIEVNEEVVLMTTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDTYPRRWGLGP 359
Query: 398 RASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
++ KK + EGKLDK+G+ NE TP +W +N V
Sbjct: 360 QSLKKKAMKKEGKLDKYGRPNENTPSDWKKNYV 392
>gi|403363097|gb|EJY81286.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 501
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 264/433 (60%), Positives = 335/433 (77%), Gaps = 4/433 (0%)
Query: 19 ASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVR 78
+S+D N A + + + N ++ IKP + PS+DTS WP+LLKNYD+LNV+
Sbjct: 2 SSSDESNHKATKKSGSKKTEKHSKNGGV-EYQIKPSTGGPSMDTSNWPLLLKNYDKLNVK 60
Query: 79 TGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLD 138
T H+TPLP G+SP RPL+++ RYG+INLDKP+NPSSHEVVAWIKRIL+V+KTGHSGTLD
Sbjct: 61 TNHFTPLPCGWSPTNRPLLEHKRYGVINLDKPSNPSSHEVVAWIKRILKVDKTGHSGTLD 120
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPP 198
PKVTG LIVCI+ ATRLVK+QQ AGKEYV + +LH V + +A+++L G VFQRPP
Sbjct: 121 PKVTGCLIVCINNATRLVKAQQSAGKEYVAIVKLHQHVEKTKTLEKAIQSLNGPVFQRPP 180
Query: 199 LISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQE 258
LISAVK++LR+RTIYE+KL E+D+ R + +FW+SCEAGTYVRTMCVH+G +LG G HMQE
Sbjct: 181 LISAVKKELRVRTIYETKLYEHDIKRDMAIFWLSCEAGTYVRTMCVHIGYLLGCGAHMQE 240
Query: 259 LRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTT 318
LRRVRSG L E+D M TMHDV DAQW ++ + +E YLRRVIMPLE+LLT R+VVKDT+
Sbjct: 241 LRRVRSGALKEDDTMATMHDVKDAQWHFEKFNNETYLRRVIMPLEILLTQLPRIVVKDTS 300
Query: 319 VNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVAR 378
VNA+CYGA+LM+PG+LR+E+ IEVG+EV+LM+TKGEA+AL IA MTT+ +ATCDHG+V +
Sbjct: 301 VNAVCYGAQLMLPGVLRYESGIEVGKEVILMSTKGEAIALAIAHMTTSTIATCDHGIVTK 360
Query: 379 IKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGG--- 435
KRV+M+RD Y RKW LGP A K+ L EGKLDK G++NE TP+ W P G
Sbjct: 361 TKRVIMERDVYERKWKLGPFAKKKETLKTEGKLDKFGRVNETTPEAWKLLFGQPEVGTSI 420
Query: 436 DSVVASLAAAAEQ 448
D+V + L EQ
Sbjct: 421 DAVASKLGVKKEQ 433
>gi|449301354|gb|EMC97365.1| hypothetical protein BAUCODRAFT_121823 [Baudoinia compniacensis
UAMH 10762]
Length = 502
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/384 (71%), Positives = 335/384 (87%), Gaps = 1/384 (0%)
Query: 43 NATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRY 102
N ++ IIKP++ +DTS+WP+LL+N+D+L VRTGH+TP+P G +PL+R + YI
Sbjct: 7 NGEEEEQIIKPEAIDAKVDTSEWPLLLRNWDQLLVRTGHFTPIPAGCTPLRRDIKSYISS 66
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+INLDKP+NPSSHEVVAW+KRILRV++TGHSGTLDPKVTG LIVCIDRATRLVKSQQGA
Sbjct: 67 GVINLDKPSNPSSHEVVAWLKRILRVDRTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGA 126
Query: 163 GKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
GKEYVCV RLHDK+P A+++RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D
Sbjct: 127 GKEYVCVLRLHDKLPGGEAQLSRALETLTGALFQRPPLISAVKRQLRIRTIHESKLFEFD 186
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
DRHL VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E + MVT+HDV+D
Sbjct: 187 NDRHLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDEQEGMVTLHDVLD 246
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
AQWL+DN RDE+YLR VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE
Sbjct: 247 AQWLHDNQRDESYLRTVIKPLETLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRYEAGIE 306
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASM 401
V EEVVL+TTKGEA+AL IA+M+T +++CDHGVVA++KR +M+RD YPR+WG+GP A+
Sbjct: 307 VHEEVVLITTKGEAIALAIAQMSTVELSSCDHGVVAKVKRCIMERDLYPRRWGMGPVATE 366
Query: 402 KKKLIAEGKLDKHGKLNEKTPQEW 425
KKK+ GKLDK+G+ NE+TP +W
Sbjct: 367 KKKMKESGKLDKYGRTNEQTPAQW 390
>gi|313239219|emb|CBY14174.1| unnamed protein product [Oikopleura dioica]
Length = 503
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 261/435 (60%), Positives = 339/435 (77%), Gaps = 7/435 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF ++P ++ WP+LLK +D+LNVRT H+TP P G SPLKR + DY+ G++N+
Sbjct: 12 DFSLQPSEDKVKQNSDNWPLLLKGWDKLNVRTNHFTPYPQGCSPLKRDIKDYVETGVLNV 71
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRIL+VEKTGHSGTLDPKVTG LIVC+ RATRLVKSQQ AGKEY+
Sbjct: 72 DKPSNPSSHEVVAWIKRILKVEKTGHSGTLDPKVTGCLIVCVGRATRLVKSQQSAGKEYI 131
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ +LH+ + D K+ +A+E LTGA+FQRPPLISAVKRQLRIRTIYES LLEYD ++ L
Sbjct: 132 CIFKLHEDIQDEKKIYKAIETLTGAMFQRPPLISAVKRQLRIRTIYESNLLEYDAEKRLG 191
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SCEAGTY+RTMCVHLGLILG GG MQELRR RSGI+ EN+ TMHD++DAQ +Y+
Sbjct: 192 VFWVSCEAGTYIRTMCVHLGLILGCGGQMQELRRCRSGIMNENELGCTMHDILDAQHVYE 251
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
DE YLR+++MPLEV+L +KR+++KD++VNAICYGAK+M+PG+LR+E+ IE+ +E+V
Sbjct: 252 TTLDETYLRKIVMPLEVILVKHKRIIMKDSSVNAICYGAKIMLPGVLRYEDGIEIDQEIV 311
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ + +A+MTTAVMATCDHGVVA+IKRV+M+RD YP+KWGLGP+AS+KK +I
Sbjct: 312 IVTTKGEAICIALAQMTTAVMATCDHGVVAKIKRVIMERDVYPKKWGLGPKASLKKAMIK 371
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASG 467
G LD++GK NEKTP + V G A A + TA K +++
Sbjct: 372 AGMLDEYGKPNEKTPDSYVDGVTNKLGK-------AVGASGNIDAMATALAKYKEIVGDL 424
Query: 468 DSPALNAKKAKVEEV 482
++P K++VE +
Sbjct: 425 EAPPAKKVKSEVESI 439
>gi|449017533|dbj|BAM80935.1| box H/ACA snoRNP rRNA pseudouridine syntase component dyskerin
[Cyanidioschyzon merolae strain 10D]
Length = 425
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/371 (75%), Positives = 323/371 (87%), Gaps = 3/371 (0%)
Query: 60 IDTSQWPILLKNYDRLNVRTGHYTPLPN-GYSPLKRPLVDYIRYGIINLDKPANPSSHEV 118
+ T WP+LLKNYDRLNVRT HYTP+P+ GYSPLKRP+ +YIR G+INLDKPANPSSHEV
Sbjct: 29 LSTDSWPLLLKNYDRLNVRTTHYTPIPDAGYSPLKRPIQEYIRSGVINLDKPANPSSHEV 88
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKRILRVEKTGHSGTLDP+VTG LIVCI+RATRLVKSQQ AGKEYV V RLH P+
Sbjct: 89 VAWIKRILRVEKTGHSGTLDPQVTGCLIVCIERATRLVKSQQSAGKEYVAVLRLHGMRPE 148
Query: 179 V--AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAG 236
+ A V RA+E LTG ++QRPPLISAVKRQLRIRTIYESKLLEYD R LV+FW+SCEAG
Sbjct: 149 LDEATVRRAIETLTGPLYQRPPLISAVKRQLRIRTIYESKLLEYDPKRRLVLFWVSCEAG 208
Query: 237 TYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLR 296
TY+RT+CVHLGL+LGVGGHMQELRRVRSG+ E D MVTMHDV+DAQWL+D +DE+YLR
Sbjct: 209 TYIRTLCVHLGLLLGVGGHMQELRRVRSGVHSEYDGMVTMHDVLDAQWLFDTTKDESYLR 268
Query: 297 RVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAV 356
RVI PLE LL +KR+V+KD+ VNA+CYGAKLM+PG+LR+ENDIE GEEVV+MTTKGEAV
Sbjct: 269 RVIKPLESLLVHHKRIVIKDSCVNAVCYGAKLMLPGVLRYENDIECGEEVVIMTTKGEAV 328
Query: 357 ALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGK 416
AL IA M+T+ +A+CDHGVVARIKRVVM+RD YPR+WGLGP AS KK +I G+LDKHG+
Sbjct: 329 ALAIAHMSTSEIASCDHGVVARIKRVVMERDLYPRRWGLGPVASRKKAMIQRGELDKHGR 388
Query: 417 LNEKTPQEWAR 427
NE TP +W R
Sbjct: 389 PNEHTPSDWRR 399
>gi|19115790|ref|NP_594878.1| pseudouridylate synthase Cbf5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|3913202|sp|O14007.1|CBF5_SCHPO RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName:
Full=Centromere-binding factor 5 homolog
gi|2239214|emb|CAB10131.1| pseudouridylate synthase Cbf5 (predicted) [Schizosaccharomyces
pombe]
Length = 474
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 288/421 (68%), Positives = 348/421 (82%), Gaps = 6/421 (1%)
Query: 48 DFIIKPQSFTPS-IDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
DF+IKP++ + S IDT++WP+LLKN+D+L VRTGHYTP+P G +PLKRP+ +Y+ G+IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKPANPSSHEVVAW+K+ILRVEKTGHSGTLDPKVTG LI+C DRATRLVKSQQ AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VCV RLHD V VA A+E LTGA+FQRPPLISAVKRQLRIR+IYESKL+E+D +R+L
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNL 188
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L END++VTMHDV+DAQW+Y
Sbjct: 189 AVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIY 248
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LL YKR+VVKD+ VNAICYGAKLMIPGLLR+E IEV EE+
Sbjct: 249 DNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEI 308
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP++ KK L
Sbjct: 309 VLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLK 368
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV--LPPGGDSVVASLAAAAEQTVAEKETAGV---KKR 461
EGKLDK+G+ NE TP +W+++ + P + + A E E GV KKR
Sbjct: 369 KEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAAPTVEAEVNGVEDSKKR 428
Query: 462 K 462
K
Sbjct: 429 K 429
>gi|453084115|gb|EMF12160.1| putative rRNA pseudouridine synthase [Mycosphaerella populorum
SO2202]
Length = 499
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 275/379 (72%), Positives = 332/379 (87%), Gaps = 2/379 (0%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
IIKP++ ++DTS WP+LLKN+D+L +RTGH+TP+P G +PLKR L Y+ G+INLD
Sbjct: 16 MIIKPEAVGSNVDTSHWPLLLKNWDQLLIRTGHFTPIPAGCTPLKRDLKSYVSSGVINLD 75
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAW+KRILRV++TGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 76 KPSNPSSHEVVAWLKRILRVDRTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVA 135
Query: 169 VARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHDK+P A++ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DR L
Sbjct: 136 VLRLHDKLPGGRAQLARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRQLA 195
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEND-NMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E+D NMVT+HD +DAQ+LY
Sbjct: 196 VFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMKEDDGNMVTLHDCLDAQYLY 255
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IEV EEV
Sbjct: 256 DNQRDESYLRTVIQPLETLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRYEAGIEVYEEV 315
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+AL IA+M+T +++CDHGVVA++KR +M+RD YPR+WG+GP A+ KKK+
Sbjct: 316 VLMTTKGEAIALAIAQMSTVELSSCDHGVVAKVKRCIMERDLYPRRWGMGPVATEKKKMK 375
Query: 407 AEGKLDKHGKLNEKTPQEW 425
GKLDK+G+ NE+TP +W
Sbjct: 376 ESGKLDKYGRTNEQTPAQW 394
>gi|427789457|gb|JAA60180.1| Putative h/aca ribonucleoprotein complex subunit 4 [Rhipicephalus
pulchellus]
Length = 476
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/414 (64%), Positives = 327/414 (78%), Gaps = 20/414 (4%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+I P S++TSQWP+LLKN+D+LNVRT HYTP+P+G +PLKR + +YIR G INL
Sbjct: 32 DFLIAPSDKAGSLNTSQWPLLLKNFDKLNVRTNHYTPMPHGCNPLKREIREYIRSGFINL 91
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP NPSSHEVVAW+KRIL+VEKTGHSGTLDPKV+G LIVCI+R TRL KSQQ AGKEYV
Sbjct: 92 DKPCNPSSHEVVAWVKRILKVEKTGHSGTLDPKVSGCLIVCIERTTRLAKSQQSAGKEYV 151
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ +LH P A VA+A E L GA+FQRPPLI+AVKRQLRIRTIY+SKLLE++ R+L
Sbjct: 152 AIFKLHQDPPSYAHVAQACEKLKGAMFQRPPLIAAVKRQLRIRTIYDSKLLEFESQRNLG 211
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
V W+SCEAGTYVRT+CVH+GL+LG G M+ELRRVRSGI EN NMVTMHDV+DAQW+++
Sbjct: 212 VLWMSCEAGTYVRTLCVHIGLLLGTGAVMEELRRVRSGIQDENSNMVTMHDVLDAQWMFE 271
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N R+E YLRR I PLE LL S+KR+V+KD+ VNA+CYGAK+M+PG+LR+E+ IE+ EEVV
Sbjct: 272 NDRNEEYLRRAIQPLERLLVSHKRIVMKDSAVNAVCYGAKVMLPGVLRYEDGIEINEEVV 331
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ LGIA M+T+ +ATCDHG+VA+IKRVVM+RDTYPRKWGLGP A KK++I
Sbjct: 332 VITTKGEAICLGIALMSTSTIATCDHGIVAKIKRVVMERDTYPRKWGLGPNALKKKQMIK 391
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPGG------------------DSVVASLA 443
+GKLDK+G+ NE TP + P GG D+ S A
Sbjct: 392 DGKLDKYGRPNENTPSGYEEGA--PAGGGHGSSVKRKHSTAEDGSGDAHTTSQA 443
>gi|332862028|ref|XP_521345.3| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
subunit 4 [Pan troglodytes]
Length = 516
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/424 (64%), Positives = 343/424 (80%), Gaps = 1/424 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NP SHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPXSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+V +IKRV+M+RDTYP + +AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVPKIKRVIMERDTYPXXXXMFHQASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLD 464
I +G LDKHGK + TP W + V V + A Q VAE +KR+ +
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAEAAKTAKRKRESE 452
Query: 465 ASGD 468
+ D
Sbjct: 453 SESD 456
>gi|145342497|ref|XP_001416218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576443|gb|ABO94511.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 411
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 278/362 (76%), Positives = 320/362 (88%), Gaps = 3/362 (0%)
Query: 45 TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
T KD I+P+S ++DTS WP+LLKNYD+L VRTGHYTP+P G SPL+RPL +Y+RYG+
Sbjct: 4 TEKDLKIEPESANHTLDTSAWPLLLKNYDKLMVRTGHYTPIPCGSSPLRRPLAEYLRYGV 63
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKPANPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG+LIVCIDRATRLVKSQQGAGK
Sbjct: 64 INLDKPANPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGSLIVCIDRATRLVKSQQGAGK 123
Query: 165 EYVCVARLHDKVPDVAKVA--RALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
EYVCV RLH P K A R +E LTGA+FQRPPLISAVKRQLRIRTIY+SKL E+D
Sbjct: 124 EYVCVCRLHS-APTGGKSAVERGIETLTGALFQRPPLISAVKRQLRIRTIYDSKLHEFDE 182
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
R+LVVFW+SCEAGTYVRT+CVHLGL+LGVGGHMQELRRVRSGI E+ N+ TMHDV+DA
Sbjct: 183 ARNLVVFWVSCEAGTYVRTLCVHLGLLLGVGGHMQELRRVRSGICSESKNLATMHDVLDA 242
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
W+ DN +D+ Y+RRV+MPLEVLLT+YKR+VVKD+ +NAICYGAKLMIPGLLR+E IEV
Sbjct: 243 MWVCDNLKDDHYIRRVVMPLEVLLTNYKRVVVKDSAINAICYGAKLMIPGLLRYEAGIEV 302
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
G+E VLMTTKGEA+A+GIAEMTTAVMATCDHG VA++KRVVM+RDTYPR+WGLGP A K
Sbjct: 303 GDECVLMTTKGEAIAIGIAEMTTAVMATCDHGSVAKVKRVVMERDTYPRRWGLGPNAQNK 362
Query: 403 KK 404
K+
Sbjct: 363 KQ 364
>gi|326918816|ref|XP_003205682.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Meleagris gallopavo]
Length = 489
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/398 (69%), Positives = 338/398 (84%), Gaps = 7/398 (1%)
Query: 67 ILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL 126
++ +N+D+LNV T HYTPLP+G +PLKR + DY+R G INLDKP+NPSSHEVVAWI+RIL
Sbjct: 25 VVQENFDKLNVLTTHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRIL 84
Query: 127 RVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARAL 186
RVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+ + A++ARA+
Sbjct: 85 RVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAI 144
Query: 187 EALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHL 246
E LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD ++ L +FW+SCEAGTY+RT+CVHL
Sbjct: 145 ETLTGALFQRPPLIAAVKRQLRVRTIYESKLVEYDPEKRLGIFWVSCEAGTYIRTLCVHL 204
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
GL+LGVGG MQELRRVRSGILGE DNMVTMHDV+DAQW YDN +D++YLRRVI+PLE LL
Sbjct: 205 GLLLGVGGQMQELRRVRSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLL 264
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
TS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEA+ L IA MTTA
Sbjct: 265 TSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIELNQEIVVITTKGEAICLAIALMTTA 324
Query: 367 VMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWA 426
V++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGK NE TP W
Sbjct: 325 VISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWK 384
Query: 427 RNVVLPPGGDSVVASL--AAAAEQTVAEKETAGVKKRK 462
+ V D +S AA A Q V+E E A +KR+
Sbjct: 385 KEYV-----DYRESSKKEAAKAPQAVSEVERAPKRKRE 417
>gi|294941896|ref|XP_002783294.1| H/ACA ribonucleoprotein complex subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239895709|gb|EER15090.1| H/ACA ribonucleoprotein complex subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 484
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 265/389 (68%), Positives = 321/389 (82%), Gaps = 12/389 (3%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
+ D +IKP S +P I+TS+WP+LLKNYDRLNVRTGHYTPLP G SPL RPL ++ YG+
Sbjct: 24 STDCMIKPSSVSPPINTSEWPLLLKNYDRLNVRTGHYTPLPFGCSPLNRPLDQHLLYGVC 83
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP NPSSHEVVAWIKRIL+ EKTGHSGTLDPKV+G L+VC++RATRLVK+QQGAGKE
Sbjct: 84 NLDKPVNPSSHEVVAWIKRILKCEKTGHSGTLDPKVSGCLLVCLNRATRLVKAQQGAGKE 143
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVCV R H A + RAL+ LTGA+FQRPP+I+AVKRQLRIRTIY SKLL+YD ++H
Sbjct: 144 YVCVVRFHADPGGEAAITRALDQLTGALFQRPPVIAAVKRQLRIRTIYWSKLLDYDEEKH 203
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ VF +SCEAGTY+RT+CVH+GL+LGVG HMQELRRVRSG LGE D +VTMHD++DAQ++
Sbjct: 204 MAVFHVSCEAGTYIRTLCVHMGLLLGVGAHMQELRRVRSGNLGEQDQLVTMHDLLDAQYV 263
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
Y++ R E YLRR IMPLE +L SY R+V+KD+ VNA+CYGAKLM+ G+LRFEN IEVG++
Sbjct: 264 YESTRSEEYLRRTIMPLERILVSYPRIVLKDSAVNAVCYGAKLMVVGVLRFENGIEVGKD 323
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEAVALGIA+MTTAV+A+ DHG VA IKRV+M+RDTY +WG GPRAS KKKL
Sbjct: 324 VVLMTTKGEAVALGIAQMTTAVIASVDHGCVATIKRVIMERDTYDSRWGYGPRASEKKKL 383
Query: 406 ------IAEGKLDKHGKLNEKTPQEWARN 428
D+ G+ NE TP+ W ++
Sbjct: 384 ILNGKL------DEKGRPNENTPESWLKH 406
>gi|308800054|ref|XP_003074808.1| Cbf5 H/ACA ribonucleoprotein complex subunit, nucleolar pseudour
(IC) [Ostreococcus tauri]
gi|119358799|emb|CAL52066.2| Cbf5 H/ACA ribonucleoprotein complex subunit, nucleolar pseudour
(IC), partial [Ostreococcus tauri]
Length = 403
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 276/361 (76%), Positives = 317/361 (87%), Gaps = 4/361 (1%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I+PQ+ TP +DTS WP+LLKNYD+L VRTGHYTP+P G SP+ RPL +Y+RYG+INLDKP
Sbjct: 5 IEPQAVTPPLDTSSWPLLLKNYDKLMVRTGHYTPIPCGSSPITRPLAEYLRYGVINLDKP 64
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
ANPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG+LIVCIDRATRLVKSQQGAGKEYVCV
Sbjct: 65 ANPSSHEVVAWLKRILRVEKTGHSGTLDPKVTGSLIVCIDRATRLVKSQQGAGKEYVCVC 124
Query: 171 RLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
RLH P K V R +E LTGA+FQRPPLISAVKRQLRIR IY+SKLLE+D R+LVV
Sbjct: 125 RLH-ATPAGGKGAVERGIETLTGALFQRPPLISAVKRQLRIRAIYKSKLLEFDEARNLVV 183
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGI E N+ TMHDV+DA W DN
Sbjct: 184 FWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGICSEAKNLSTMHDVLDAMWASDN 243
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+D+ Y+RRV+MPLEVLLT+YKR+V+KD+ VNAICYGAKLM+PGLLR+E IEVG E +L
Sbjct: 244 LKDDGYIRRVVMPLEVLLTNYKRIVIKDSAVNAICYGAKLMLPGLLRYEAGIEVGNECIL 303
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+A+GIAEMTTAVMATCDHG VA++KRVVM+RDTYPR+WGLGP S K+L AE
Sbjct: 304 MTTKGEAIAIGIAEMTTAVMATCDHGSVAKVKRVVMERDTYPRRWGLGPN-SQSKRLSAE 362
Query: 409 G 409
G
Sbjct: 363 G 363
>gi|171692219|ref|XP_001911034.1| hypothetical protein [Podospora anserina S mat+]
gi|170946058|emb|CAP72859.1| unnamed protein product [Podospora anserina S mat+]
Length = 474
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 267/387 (68%), Positives = 323/387 (83%), Gaps = 5/387 (1%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
+ +KD I+ + P ++ ++ P+LLK Y+ + VRT H+TP+P G +P KR + YI G
Sbjct: 2 SVSKDVIMPSSAPAPPVNDNELPLLLKGYNDMLVRTNHWTPIPYGCAPHKRDIKSYISSG 61
Query: 104 IINLDKPANPSSHEVVAWIKRILR---VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
+INLDKP+NPSSHEVVAW+KR+LR VEKTGHSGTLDPKVTG LIVC+DRATRLVK+QQ
Sbjct: 62 VINLDKPSNPSSHEVVAWLKRMLRYVVVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQ 121
Query: 161 GAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
GAGKEYVCV RLHDKVP A A+ALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E
Sbjct: 122 GAGKEYVCVIRLHDKVPGGEAAFAQALETLTGALFQRPPLISAVKRQLRIRTIHESKLIE 181
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN-MVTMHD 278
+D DRHL VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG++ E+D +VT+HD
Sbjct: 182 FDNDRHLGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGVMSEDDGKLVTLHD 241
Query: 279 VMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
V+DAQW YDN DE LR+VI PLE LL +YKRLVVKDT VNAICYGAKL +PGLLR+
Sbjct: 242 VLDAQWAYDNGGDETLLRKVIHPLETLLCTYKRLVVKDTAVNAICYGAKLTLPGLLRYSK 301
Query: 339 DIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPR 398
DI+V EEVVL+TTKGEA+A+GIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP
Sbjct: 302 DIDVHEEVVLITTKGEAIAIGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPT 361
Query: 399 ASMKKKLIAEGKLDKHGKLNEKTPQEW 425
A KKKL ++GKLDK+G+ NE TP W
Sbjct: 362 AIEKKKLKSDGKLDKYGRANENTPAAW 388
>gi|170591298|ref|XP_001900407.1| Nucleolar protein K01G5.5 [Brugia malayi]
gi|158592019|gb|EDP30621.1| Nucleolar protein K01G5.5, putative [Brugia malayi]
Length = 452
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/380 (70%), Positives = 324/380 (85%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A D+ IKP T +DTSQWP+LLKN+D+LNVR+ HYTPLP G SPLKR + +Y+ G I
Sbjct: 21 AGDYSIKPSEKTAVLDTSQWPLLLKNFDKLNVRSNHYTPLPEGCSPLKRDIKNYVSSGCI 80
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAW+KRILRV+KTGHSGTLDPKV+G LIVCIDRATRL KSQQGAGKE
Sbjct: 81 NLDKPANPSSHEVVAWVKRILRVDKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQGAGKE 140
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ V KV +ALE LTGA+FQRPPLISAVKRQLRIRTIYE+KL+EY+ ++
Sbjct: 141 YVAIFRLHNTVESEKKVKQALEKLTGALFQRPPLISAVKRQLRIRTIYENKLIEYNSSQN 200
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ +FW+ CEAGTYVRT+CVHLGL+LGVGG MQELRRVRSGI GE DN++TMHD++DAQ+L
Sbjct: 201 MGIFWVKCEAGTYVRTICVHLGLLLGVGGQMQELRRVRSGIFGEKDNLMTMHDILDAQYL 260
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD++ D++YLRRVI PLE LL +KR+VVKD+ VNAICYGAK+++PG+LRFEN IE+ EE
Sbjct: 261 YDHHNDDSYLRRVIRPLESLLVGHKRIVVKDSAVNAICYGAKILLPGILRFENGIELNEE 320
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ L +A MTT+ MA DHGVVA+IKRV+M+RDTY RKW LGP AS KK +
Sbjct: 321 IVIVTTKGEAICLALALMTTSTMAVTDHGVVAKIKRVIMERDTYARKWCLGPVASKKKAM 380
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
I++G LDK+GK NEKTP W
Sbjct: 381 ISQGLLDKYGKPNEKTPAGW 400
>gi|402593687|gb|EJW87614.1| dyskeratosis congenita 1 [Wuchereria bancrofti]
Length = 453
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/380 (70%), Positives = 324/380 (85%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A D+ IKP T +DTSQWP+LLKN+D+LNVR+ HYTPLP G SPLKR + +Y+ G I
Sbjct: 21 AGDYSIKPSEKTAVLDTSQWPLLLKNFDKLNVRSNHYTPLPEGCSPLKRDIKNYVSSGCI 80
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAW+KRILRV+KTGHSGTLDPKV+G LIVCIDRATRL KSQQGAGKE
Sbjct: 81 NLDKPANPSSHEVVAWVKRILRVDKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQGAGKE 140
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ V KV +ALE LTGA+FQRPPLISAVKRQLRIRTIYE+KL+EY+ ++
Sbjct: 141 YVAIFRLHNTVESEKKVRQALEKLTGALFQRPPLISAVKRQLRIRTIYENKLIEYNSSQN 200
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ +FW+ CEAGTYVRT+CVHLGL+LGVGG MQELRRVRSGI GE DN++TMHD++DAQ+L
Sbjct: 201 MGIFWVKCEAGTYVRTICVHLGLLLGVGGQMQELRRVRSGIFGEKDNLMTMHDILDAQYL 260
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD++ D++YLRRVI PLE LL +KR+VVKD+ VNAICYGAK+++PG+LRFEN IE+ EE
Sbjct: 261 YDHHNDDSYLRRVIRPLESLLVGHKRIVVKDSAVNAICYGAKILLPGILRFENGIELNEE 320
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ L +A MTT+ MA DHGVVA+IKRV+M+RDTY RKW LGP AS KK +
Sbjct: 321 IVIVTTKGEAICLALALMTTSTMAVTDHGVVAKIKRVIMERDTYARKWCLGPVASKKKAM 380
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
I++G LDK+GK NEKTP W
Sbjct: 381 ISQGLLDKYGKPNEKTPAGW 400
>gi|346471023|gb|AEO35356.1| hypothetical protein [Amblyomma maculatum]
Length = 490
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 255/378 (67%), Positives = 316/378 (83%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+I P S++TSQWP+LLKN+D LNVRT HY P+P+G +PLKR L +YIR G INL
Sbjct: 31 DFLIAPSDKAGSLNTSQWPLLLKNFDALNVRTNHYVPMPHGSNPLKRELREYIRSGFINL 90
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP NPSSHEVVAW+KRIL+VEKTGHSGTLDPKV+G LIVCI+R TRL KSQQ AGKEYV
Sbjct: 91 DKPCNPSSHEVVAWVKRILKVEKTGHSGTLDPKVSGCLIVCIERTTRLAKSQQSAGKEYV 150
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ +LH + + +A E L GA+FQRPPLI+AVKRQLRIRTIY+SKLL+YD +++
Sbjct: 151 AIFKLHQDPASYSHIVQACEKLKGAMFQRPPLIAAVKRQLRIRTIYDSKLLDYDSRQNMG 210
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
V W+SCEAGTYVRT+CVH+GL+LG G M+ELRRVRSGI E MVT+HDV+DAQWLY+
Sbjct: 211 VLWMSCEAGTYVRTLCVHIGLLLGTGAVMEELRRVRSGIQDETSGMVTLHDVLDAQWLYE 270
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N+RDE YLRRVI PLE LL S+KR+V+KD+ VNA+CYGAK+M+PG+LR+E+ IE+ EEVV
Sbjct: 271 NHRDEEYLRRVIQPLERLLVSHKRVVMKDSAVNAVCYGAKVMLPGVLRYEDGIELNEEVV 330
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ +GIA M+T+ ++TCDHG+VA+IKRVVM+RDTYPRKWGLGP A KK++I
Sbjct: 331 VITTKGEAICIGIALMSTSTISTCDHGIVAKIKRVVMERDTYPRKWGLGPNALKKKQMIK 390
Query: 408 EGKLDKHGKLNEKTPQEW 425
EGKLDK+G+ NE TP +
Sbjct: 391 EGKLDKYGRPNESTPSGY 408
>gi|328716300|ref|XP_001948470.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Acyrthosiphon pisum]
Length = 478
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 246/385 (63%), Positives = 323/385 (83%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F IKP +ID+S+WP+LLK++D +NVRT HYTPLP G +PL+R + +Y++ G INLD
Sbjct: 36 FFIKPSVKAATIDSSKWPLLLKHFDNMNVRTNHYTPLPFGSNPLQREIREYVKAGYINLD 95
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKR+L+VEKTGHSGTLDPK +G L+VCI+RATRLVKSQQ +GKEY+
Sbjct: 96 KPSNPSSHEVVAWIKRMLKVEKTGHSGTLDPKTSGVLVVCIERATRLVKSQQSSGKEYIS 155
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
V +LH V + ++ + LE+L GA+FQRPPLISAVKRQLRIRTIYE+KLL+YD++ ++ V
Sbjct: 156 VFKLHSPVESILQINKTLESLRGALFQRPPLISAVKRQLRIRTIYENKLLDYDMEANIGV 215
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FWI CEAGTYVRT+CVH+GL+LG GG M ELRR RSGI E + + T+HDV+DAQW+++N
Sbjct: 216 FWIKCEAGTYVRTLCVHMGLMLGTGGQMIELRRNRSGITSEEEGLATLHDVLDAQWIFEN 275
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+YLRRV+ PLE +LT+YKR+ VKD+ +NAICYGAK+M+PGLLR+++ IE+ E+V+
Sbjct: 276 NKDESYLRRVVRPLEGILTNYKRVFVKDSAINAICYGAKIMLPGLLRYDDGIELNMEIVI 335
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+++KGEAVALG+A MTTA +++CDHG++A+IKRV+MDRDTYPRKWGLGP AS KK +I +
Sbjct: 336 VSSKGEAVALGVALMTTATISSCDHGIIAKIKRVLMDRDTYPRKWGLGPMASTKKSMIKD 395
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPP 433
G LDK+GK NE TP+ W++ P
Sbjct: 396 GLLDKYGKPNENTPENWSQTFYKEP 420
>gi|440803036|gb|ELR23950.1| rRNA pseudouridine synthase, putative [Acanthamoeba castellanii
str. Neff]
Length = 523
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/385 (72%), Positives = 338/385 (87%), Gaps = 2/385 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF I P + +DTS+WP+LLKNYD+L VRTGHYTP+P G+SPLKRPL DY+RYG+INL
Sbjct: 42 DFSISPAAKGAVLDTSKWPLLLKNYDKLLVRTGHYTPIPTGHSPLKRPLDDYVRYGVINL 101
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG L+VCI RATRLVKSQQGAGKEYV
Sbjct: 102 DKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLLVCIQRATRLVKSQQGAGKEYV 161
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLH + + AK+A+A+E LTGA+FQRPPLI+AVKR+LR+RTIY+SKL+E+D +R+L
Sbjct: 162 AVVRLHSAIDEEAKLAKAIETLTGALFQRPPLIAAVKRRLRVRTIYQSKLVEFDKERNLG 221
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN--DNMVTMHDVMDAQWL 285
+FW+ CEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG+L EN D +VT HD++DAQ++
Sbjct: 222 IFWVDCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGLLTENAKDCLVTCHDILDAQYV 281
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD +DE+YLRR+I PLEVLLT +KR+VVKD+ VNAICYGAK MIPGLLR+E IEVGEE
Sbjct: 282 YDTTKDESYLRRIIQPLEVLLTKHKRVVVKDSAVNAICYGAKFMIPGLLRYEEGIEVGEE 341
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V+MTTKGEA+ALGIA+M+TA MA+CDHGVVA+IKRV+++RDTYPR+WG GPRA +KK+L
Sbjct: 342 IVMMTTKGEAIALGIAQMSTADMASCDHGVVAKIKRVILERDTYPRRWGKGPRAQLKKQL 401
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVV 430
I +GKLDK G+ N+ TP EW V
Sbjct: 402 IKDGKLDKFGRPNDNTPSEWKNTYV 426
>gi|449267888|gb|EMC78779.1| H/ACA ribonucleoprotein complex subunit 4, partial [Columba livia]
Length = 464
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/397 (69%), Positives = 334/397 (84%), Gaps = 11/397 (2%)
Query: 71 NYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEK 130
N+D+LNV T HYTPLP+G +PLKR + DY+R G INLDKP+NPSSHEVVAWI+RILRVEK
Sbjct: 1 NFDKLNVMTAHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEK 60
Query: 131 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALT 190
TGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+ + A++ARA+E LT
Sbjct: 61 TGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLT 120
Query: 191 GAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
GA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R L +FW+SCEAGTY+RT+CVHLGL+L
Sbjct: 121 GALFQRPPLIAAVKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLL 180
Query: 251 GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
GVGG MQELRRVRSGILGE DNMVTMHDV+DAQW YDN +D++YLRRVI+PLE LLTS+K
Sbjct: 181 GVGGQMQELRRVRSGILGEKDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHK 240
Query: 311 RLVVKDTTV----NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
R+V+KD+ NAICYGAK+++PG+LR+E+ IE+ +E+V++TTKGEA+ L IA MTTA
Sbjct: 241 RIVMKDSAFIRKKNAICYGAKILLPGVLRYEDGIELNQEIVVITTKGEAICLAIALMTTA 300
Query: 367 VMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWA 426
V++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGK NEKTP W
Sbjct: 301 VISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNEKTPDSWK 360
Query: 427 RNVVLPPGGDSVVASL--AAAAEQTVAEKETAGVKKR 461
+ V D AS AAA + V+E E A +KR
Sbjct: 361 EDYV-----DYRDASKKEAAAVPRAVSETERAPKRKR 392
>gi|312082773|ref|XP_003143583.1| nucleolar protein [Loa loa]
gi|307761254|gb|EFO20488.1| nucleolar protein [Loa loa]
Length = 453
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/380 (69%), Positives = 323/380 (85%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A D+ IKP +DTSQWP+LLKN+D++NVR+ HYTPLP G SPLKR + +Y+ G I
Sbjct: 21 AGDYSIKPSEKAAVLDTSQWPLLLKNFDKMNVRSNHYTPLPEGCSPLKRDIKNYVSSGCI 80
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKV+G LIVCIDRATRL KSQQGAGKE
Sbjct: 81 NLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQGAGKE 140
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ V KV +ALE LTGA+FQRPPLISAVKRQLRIRTIYE++L+EY+ +++
Sbjct: 141 YVAIFRLHNTVESEKKVRQALEKLTGALFQRPPLISAVKRQLRIRTIYENRLIEYNSNQN 200
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
+ +FW+ CEAGTYVRT+CVHLGL+LGVGG MQELRRVRSGI GE DN++TMHD++DAQ+L
Sbjct: 201 MGIFWVKCEAGTYVRTICVHLGLLLGVGGQMQELRRVRSGIFGEKDNLMTMHDILDAQYL 260
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD++ +++YLRRVI PLE LL +KR+VVKD+ VNAICYGAK+++PG+LRFEN IE+ EE
Sbjct: 261 YDHHNNDSYLRRVIRPLESLLVGHKRIVVKDSAVNAICYGAKILLPGILRFENGIELNEE 320
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ L +A MTT+ MA DHGVVA+IKRV+M+RDTY RKW LGP AS KK +
Sbjct: 321 IVIVTTKGEAICLALALMTTSTMAVTDHGVVAKIKRVIMERDTYARKWCLGPIASKKKAM 380
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
I +G LDK+GK NEKTP W
Sbjct: 381 INQGLLDKYGKPNEKTPAGW 400
>gi|193676464|ref|XP_001951759.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Acyrthosiphon pisum]
Length = 476
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 248/385 (64%), Positives = 321/385 (83%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F IKP +ID+S+WP+LLK++D +NVRT HYTPLP G +PL+R + +YI+ G INLD
Sbjct: 36 FFIKPSEKAATIDSSKWPLLLKHFDNMNVRTNHYTPLPFGSNPLQREIREYIKAGYINLD 95
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKR+L+VEKTGHSGTLDPK +G L+VCI+RATRLVKSQQ +GKEY+
Sbjct: 96 KPSNPSSHEVVAWIKRMLKVEKTGHSGTLDPKTSGVLVVCIERATRLVKSQQSSGKEYIS 155
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
V +LH+ V V ++ + LE+L GA+FQRPPLI+AVKRQLRIRTIYE+KLL+YD + ++ V
Sbjct: 156 VFKLHNPVESVLQIKKTLESLRGALFQRPPLIAAVKRQLRIRTIYENKLLDYDEESNIGV 215
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FWI CEAGTYVRT+CVH+GL+LG GG M ELRR RSGI E + + T+HDV+DAQW+Y+N
Sbjct: 216 FWIKCEAGTYVRTLCVHMGLMLGTGGQMIELRRNRSGITSEEEGLATLHDVLDAQWMYEN 275
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+YLRRV+ PLE +LT+YKR+ VKD+ +NAICYGAK+M+PGLLR+++ IE+ E+V+
Sbjct: 276 NKDESYLRRVVRPLEGILTNYKRVFVKDSAINAICYGAKIMLPGLLRYDDGIELNMEIVI 335
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+++KGEAVALG+A MTTA +++CDHG++A+IKRV+MDRDTYPRKWGLGP AS KK +I +
Sbjct: 336 VSSKGEAVALGVALMTTATISSCDHGIIAKIKRVLMDRDTYPRKWGLGPMASTKKTMIKD 395
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPP 433
G LDK+GK NE TP W + P
Sbjct: 396 GLLDKYGKPNENTPDNWKQTFYKEP 420
>gi|242019416|ref|XP_002430157.1| minifly protein, putative [Pediculus humanus corporis]
gi|212515248|gb|EEB17419.1| minifly protein, putative [Pediculus humanus corporis]
Length = 512
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 261/383 (68%), Positives = 322/383 (84%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF ++P ++TS WP+LLKN+D+LNVR+ H+TPLP G SPLKR L DYI G INL
Sbjct: 27 DFAVEPSQAVVKLETSDWPLLLKNFDKLNVRSNHFTPLPFGCSPLKRELKDYISGGYINL 86
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHE+VAWIKRIL+VEKTGHSGTLDPK TG LIVCI+RATRL KSQQ AGKEYV
Sbjct: 87 DKPANPSSHEIVAWIKRILKVEKTGHSGTLDPKTTGCLIVCIERATRLAKSQQTAGKEYV 146
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ +LH V V V RALE L G +FQRPPLISAVKRQLR+R IY+SKL+EYD++++
Sbjct: 147 CIFKLHSSVDSVDSVRRALEKLRGPLFQRPPLISAVKRQLRVRNIYDSKLIEYDMEKNQG 206
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+ CEAGTYVRTMCVHLGL+LGVGG M ELRR RSGI E+D +VTMHDV+DAQW+YD
Sbjct: 207 IFWVKCEAGTYVRTMCVHLGLLLGVGGQMIELRRNRSGIQSESDGLVTMHDVLDAQWVYD 266
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
NY+DE+YLRRVI PLE LL +KR+++KD++V+AICYGAK+ +PG+LR+E+ IE+GEE+V
Sbjct: 267 NYKDESYLRRVIKPLEGLLVQHKRIIMKDSSVSAICYGAKITLPGVLRYEDGIELGEEIV 326
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
++TTKGEA+ + A MTTA +A+CDHGVVA+IKRV+M+RD YPR+WGLGP+ASMKK +I
Sbjct: 327 IVTTKGEAICIANALMTTATIASCDHGVVAKIKRVIMERDLYPRRWGLGPKASMKKNMIK 386
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+G LDK+GK NEKTP +W + V
Sbjct: 387 QGLLDKYGKPNEKTPSDWLTSYV 409
>gi|145488199|ref|XP_001430104.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145507894|ref|XP_001439899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397199|emb|CAK62706.1| unnamed protein product [Paramecium tetraurelia]
gi|124407100|emb|CAK72502.1| unnamed protein product [Paramecium tetraurelia]
Length = 447
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/381 (68%), Positives = 331/381 (86%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+I+ P ID+S WP+LLKNY+R+N+ T HYTP+P+G +PLKRPL+++++YG+INLDK
Sbjct: 23 VIRTSHQGPKIDSSNWPLLLKNYERMNILTSHYTPIPSGSTPLKRPLIEHLKYGVINLDK 82
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVV+WIKRIL+V+KTGHSGTLDPKVTG LIVC++RATRLVK+QQ AGKEYV +
Sbjct: 83 PSNPSSHEVVSWIKRILKVDKTGHSGTLDPKVTGALIVCLNRATRLVKAQQSAGKEYVGI 142
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLHD + AK+ +A++ LTGAVFQ+PP ISAVKR+LR+RTIYESKL EYD ++ L +F
Sbjct: 143 IRLHDAISSAAKLEKAIQDLTGAVFQKPPAISAVKRELRVRTIYESKLFEYDPEKRLGIF 202
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+SCEAGTYVRT+CVHLGL+LGVGGHM+ELRRVRSGIL EN MV+MHDV+DAQ+ Y+ +
Sbjct: 203 WMSCEAGTYVRTLCVHLGLLLGVGGHMEELRRVRSGILDENKYMVSMHDVLDAQYRYEKF 262
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+DE+YLR VI+PLEVLLT+YKR+VVKD+TVNAICYGAKLM+PG+LRF++ I++G+E+VL+
Sbjct: 263 KDESYLRHVIIPLEVLLTNYKRVVVKDSTVNAICYGAKLMVPGVLRFDDKIDIGDEIVLI 322
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+ IA+MTT +A+CDHGVV + KRV+MDR+TYPRKWG GPRA KK LI EG
Sbjct: 323 TTKGEAIAVAIAQMTTGEIASCDHGVVCKSKRVIMDRETYPRKWGTGPRALRKKALIKEG 382
Query: 410 KLDKHGKLNEKTPQEWARNVV 430
LD HGK N TPQ+W + V
Sbjct: 383 LLDPHGKPNANTPQDWQQFYV 403
>gi|307209198|gb|EFN86305.1| H/ACA ribonucleoprotein complex subunit 4 [Harpegnathos saltator]
Length = 514
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/421 (62%), Positives = 330/421 (78%), Gaps = 7/421 (1%)
Query: 71 NYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEK 130
N+D++ RT H+TPL G +PL R L +YI+ G INLDKP NPSSHEVVAWIK+ILRVEK
Sbjct: 45 NFDKMLTRTKHFTPLLYGSTPLNRNLSEYIKSGCINLDKPCNPSSHEVVAWIKKILRVEK 104
Query: 131 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALT 190
TGHSGTLDPKV+G LIVCIDRATRL KSQQ AGKEYV V +LH + K+ +ALE L
Sbjct: 105 TGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVFKLHSAPESLQKIQQALEKLR 164
Query: 191 GAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
GA+FQRPP+ISAVKRQLR+RT+Y+S LL+YD RH+ VF +SCEAG+Y+RT+CVHLGL L
Sbjct: 165 GALFQRPPIISAVKRQLRVRTVYDSTLLDYDSARHMGVFQVSCEAGSYIRTLCVHLGLFL 224
Query: 251 GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
G G HMQELRR+RSGI ENDNMVTMHD++DAQWLYDN+ DE+YLRRVI PLE LL ++K
Sbjct: 225 GTGCHMQELRRIRSGIQSENDNMVTMHDILDAQWLYDNHGDESYLRRVIKPLETLLVNHK 284
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMAT 370
R+++KD+ VNAICYGA++M+PG+L +++ IE+ +EVV++TTKGEA+AL IA MT+A MA
Sbjct: 285 RIIIKDSAVNAICYGAQIMLPGVLMYDSHIEINQEVVIVTTKGEAIALAIALMTSATMAA 344
Query: 371 CDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
CDHG A+IKRV+M+RD YPRKWGLGP++S KK++I EGKLDK+GK NE TP EW N
Sbjct: 345 CDHGTAAKIKRVIMERDAYPRKWGLGPKSSTKKRMIIEGKLDKYGKPNENTPAEWLENYT 404
Query: 431 LPPGGDSVVASLAAAAEQTVAEKETAGVK-KRKLDASGDSPALNAKKAKVEEVVEVEKEE 489
G + V+ ++TV ET G K KR+ ++S P ++ K+ E ++VE E
Sbjct: 405 YYSGSEPTVSVKTENNDETV---ETVGKKRKRESESSTIEPNVSIKQ---EVSIKVEDAE 458
Query: 490 T 490
T
Sbjct: 459 T 459
>gi|308497718|ref|XP_003111046.1| hypothetical protein CRE_04622 [Caenorhabditis remanei]
gi|308242926|gb|EFO86878.1| hypothetical protein CRE_04622 [Caenorhabditis remanei]
Length = 444
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 255/394 (64%), Positives = 319/394 (80%), Gaps = 4/394 (1%)
Query: 37 ADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPL 96
A+A N + F + + +D SQWP+LLKNYD+LNVRT HYTP G SPLKR +
Sbjct: 16 AEAQQNGS----FQLPSSTEIAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDI 71
Query: 97 VDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLV 156
+YI G NLDKP+NPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL
Sbjct: 72 KNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLA 131
Query: 157 KSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESK 216
KSQQGAGKEY+C+ +LH++V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+YE+K
Sbjct: 132 KSQQGAGKEYICIFKLHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENK 191
Query: 217 LLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTM 276
+EYD + + +F CE+GTYVRT+CVHLGLILG GG MQELRR RSGI EN+NMVTM
Sbjct: 192 FIEYDPAQQMGIFNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTM 251
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF 336
HDV+DAQ+L D +DE+Y+R ++ PLE LLT +KR+VVKD+ VNAICYGAK++IPG+LR+
Sbjct: 252 HDVLDAQYLLDTQKDESYMRHIVRPLEALLTQHKRVVVKDSCVNAICYGAKILIPGVLRY 311
Query: 337 ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG 396
++DIEVG+E+V+MTTKGEAV + IA+M+T+ +A+ DHG+VA+ KRV+M+RD Y RKWGLG
Sbjct: 312 DDDIEVGKEIVIMTTKGEAVCIAIAQMSTSTIASVDHGIVAKSKRVIMERDVYGRKWGLG 371
Query: 397 PRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
P AS KK+++ +G LDK GK N+ TP+ WA+ V
Sbjct: 372 PVASKKKQMVKDGLLDKFGKPNDSTPKSWAKEYV 405
>gi|444510545|gb|ELV09629.1| H/ACA ribonucleoprotein complex subunit 4, partial [Tupaia
chinensis]
Length = 489
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/404 (67%), Positives = 332/404 (82%), Gaps = 11/404 (2%)
Query: 69 LKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRV 128
+ N+D+LNVRT HYTPLP G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRV
Sbjct: 22 IANFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRV 81
Query: 129 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEA 188
EKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+ + +++RALE
Sbjct: 82 EKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALET 141
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVHLGL
Sbjct: 142 LTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGL 201
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWLYDN++D++YLRRV+ PLE LLTS
Sbjct: 202 LLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDDSYLRRVVYPLEKLLTS 261
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVM 368
+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+V++TTKGEA+ + IA MTTAV+
Sbjct: 262 HKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVI 321
Query: 369 ATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEW--- 425
+TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS K+ +I +G LDKHGK + TP W
Sbjct: 322 STCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKRLMIKQGLLDKHGKPTDNTPAAWKQE 381
Query: 426 --------ARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKR 461
R VV+ V AA A Q VAE A +KR
Sbjct: 382 YIDYSDSAKREVVVEAVQVPQVVGEAAKALQGVAEAVKAPKRKR 425
>gi|403414199|emb|CCM00899.1| predicted protein [Fibroporia radiculosa]
Length = 498
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/411 (65%), Positives = 318/411 (77%), Gaps = 25/411 (6%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IK +S P +DTSQWP+LLKNYD+L VR+ H+TP+P+G SPLKR +V YI+ G+INL
Sbjct: 18 DYAIKSESSAPKLDTSQWPLLLKNYDKLLVRSAHFTPIPSGCSPLKRDIVTYIKSGVINL 77
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW++RILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 78 DKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 137
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLH +P+ + RA++ LTGA+FQRPPLISAVKRQLRIRTIYES LLE+D R+L
Sbjct: 138 AVLRLHSALPNPTSLPRAIQTLTGALFQRPPLISAVKRQLRIRTIYESNLLEFDEKRNLA 197
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+SC VGGHMQELRRVRSG L END+MVTMHDV+DAQW+YD
Sbjct: 198 VFWVSC------------------VGGHMQELRRVRSGALSENDSMVTMHDVLDAQWVYD 239
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLRRVI PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E DI + EEV
Sbjct: 240 NTRDESYLRRVIRPLESLLIGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEADISLNEEVD 299
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
GEA+AL IA+M+T +ATCDHGVVA++KR +M+RDTYPR+WGLGP+A KKK++
Sbjct: 300 NF-FPGEAIALAIAQMSTVELATCDHGVVAKVKRCIMERDTYPRRWGLGPKALEKKKMVK 358
Query: 408 EGKLDKHG-KLNEKTPQEWARNVV-----LPPGGDSVVASLAAAAEQTVAE 452
EGKL K G K++ TP EW+R+ V P G S V A + V E
Sbjct: 359 EGKLSKFGEKIDGVTPAEWSRDYVDYNREQPTAGPSTVEIPPLPAAEQVTE 409
>gi|17553978|ref|NP_499370.1| Protein K01G5.5 [Caenorhabditis elegans]
gi|3914150|sp|O17919.1|DKC1_CAEEL RecName: Full=Putative H/ACA ribonucleoprotein complex subunit 4
gi|3924791|emb|CAB07244.1| Protein K01G5.5 [Caenorhabditis elegans]
Length = 445
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 251/382 (65%), Positives = 314/382 (82%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F + + T +D SQWP+LLKNYD+LNVRT HYTP G SPLKR + +YI G NLD
Sbjct: 24 FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLD 83
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL KSQQGAGKEY+C
Sbjct: 84 KPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYIC 143
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH++V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+YE+K +EYD + + +
Sbjct: 144 IFKLHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGI 203
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
F CE+GTYVRT+CVHLGLILG GG MQELRR RSGI EN+NMVTMHDV+DAQ+L D
Sbjct: 204 FNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYLLDT 263
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+Y+R ++ PLE LLT +KR+VVKD+ +NAICYGAK++IPG+LR+++DIEVG+E+V+
Sbjct: 264 QKDESYMRHIVRPLEALLTQHKRVVVKDSCINAICYGAKILIPGILRYDDDIEVGKEIVI 323
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
M+TKGEA+ + IA+M T+ +A+ DHGVVA+ KRV+M+RD Y RKWGLGP AS KK+++ +
Sbjct: 324 MSTKGEAICIAIAQMNTSTIASVDHGVVAKSKRVIMERDVYGRKWGLGPVASKKKQMVKD 383
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
G LDK GK N+ TP+ WA+ V
Sbjct: 384 GLLDKFGKPNDTTPKSWAKEYV 405
>gi|197245421|ref|NP_001127802.1| Nucleolar protein at 60B homolog [Nasonia vitripennis]
Length = 518
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 248/375 (66%), Positives = 311/375 (82%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
++P + ++ WP+L KN+D++ RT H+TPL +G +PL R L +Y++ G INLDKP
Sbjct: 26 MEPSNDVGKLECKDWPLLFKNFDKMLTRTKHFTPLSSGSTPLHRTLSEYVQSGCINLDKP 85
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVVAWIKRIL+V+KTGHSGTLDPKV+G LIVCIDRATRL KSQQ AGKEYV V
Sbjct: 86 SNPSSHEVVAWIKRILKVQKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVF 145
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+LH V +V K+ +ALE L GA+FQRPPLISAVKRQLR+RT+Y+S L+YD DR++ VF
Sbjct: 146 KLHSAVDNVKKIHQALEKLKGALFQRPPLISAVKRQLRVRTVYDSWFLDYDEDRNMGVFK 205
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+SCEAG+Y+RT+CVHLGL LG G MQELRR RSGI+ E D +VTMHD++DAQWLY+N+
Sbjct: 206 VSCEAGSYIRTICVHLGLFLGTGCQMQELRRNRSGIMSEKDGLVTMHDILDAQWLYENHG 265
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLRRVI PLE LL ++KR++VKD+ VNAICYGAK+M+PG+L ++ IE+ +E+V++T
Sbjct: 266 DESYLRRVIRPLESLLVNHKRIIVKDSAVNAICYGAKIMLPGVLMYDEGIELNQEIVIVT 325
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL IA MTT M+ CDHGVVA+IKRV+M+RD YPRKWGLGP+AS KK+LI EGK
Sbjct: 326 TKGEAVALAIALMTTPTMSACDHGVVAKIKRVIMERDAYPRKWGLGPKASQKKRLIVEGK 385
Query: 411 LDKHGKLNEKTPQEW 425
LDKHGK NE TP +W
Sbjct: 386 LDKHGKPNENTPSDW 400
>gi|268574684|ref|XP_002642321.1| Hypothetical protein CBG18316 [Caenorhabditis briggsae]
gi|67460235|sp|Q60YA8.1|DKC1_CAEBR RecName: Full=Putative H/ACA ribonucleoprotein complex subunit 4
Length = 445
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 251/382 (65%), Positives = 314/382 (82%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F + + T +D SQWP+LLKNYD+LNVRT HYTP G SPLKR + +YI G NLD
Sbjct: 24 FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLD 83
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL KSQQGAGKEY+C
Sbjct: 84 KPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYIC 143
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH++V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+YE+K +EYD + + +
Sbjct: 144 IFKLHEEVEDERKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGI 203
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
F CE+GTYVRT+CVHLGLILG GG MQELRR RSGI EN+NMVTMHDV+DAQ++ D
Sbjct: 204 FNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYMLDT 263
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+Y+R ++ PLE LLT +KR+VVKD+ VNAICYGAK++IPG+LR+++DIEVG+E+V+
Sbjct: 264 QKDESYMRHIVRPLEALLTQHKRVVVKDSCVNAICYGAKILIPGILRYDDDIEVGKEIVI 323
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+ + IA+M+T+ +A+ DHG+VA+ KRV+M+RD Y RKWGLGP AS KK+++ +
Sbjct: 324 MTTKGEAICIAIAQMSTSTIASVDHGIVAKSKRVIMERDVYGRKWGLGPVASKKKQMVKD 383
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
G LDK GK N TP+ WA+ V
Sbjct: 384 GLLDKFGKPNITTPKSWAKEYV 405
>gi|332022422|gb|EGI62730.1| H/ACA ribonucleoprotein complex subunit 4 [Acromyrmex echinatior]
Length = 517
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 247/378 (65%), Positives = 309/378 (81%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I P ++ WP+L KN+D++ RT H+TPL +G +PL R L +YI+ G INLDKP
Sbjct: 25 IDPSKMEVKLECKDWPLLFKNFDKMLTRTKHFTPLTSGSTPLNRSLSEYIKSGCINLDKP 84
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
NPSSHEVVAWIK+ILRVEKTGHSGTLDPKV+G LIVCIDRATRL KSQQ AGKEYV V
Sbjct: 85 CNPSSHEVVAWIKKILRVEKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVF 144
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+LH V KV +ALE L GA+FQRPPLISAVKRQLR+RT+Y+S L+YD +R++ +F
Sbjct: 145 KLHSAAESVQKVNQALEKLRGALFQRPPLISAVKRQLRVRTVYDSWFLDYDQERNMGIFR 204
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+SCEAG+Y+RTMCVHLGL LG G HMQELRR RSG+L E D MVTM D++DAQWLYDN+
Sbjct: 205 VSCEAGSYIRTMCVHLGLFLGTGCHMQELRRSRSGVLSEQDGMVTMQDILDAQWLYDNHG 264
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLRRVI PLE LL ++KR+++KD+ VNAICYGAK+M+PG+L ++ IE+ EE+V++T
Sbjct: 265 DESYLRRVIRPLESLLINHKRIIIKDSAVNAICYGAKIMLPGVLMYDQGIELNEEIVIVT 324
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVA+ IA M++ MA CDHGV A++KRV+M+RD+YPRKWGLGP+AS KK+++AEG
Sbjct: 325 TKGEAVAIAIALMSSPTMAACDHGVAAKLKRVIMERDSYPRKWGLGPKASQKKRMVAEGL 384
Query: 411 LDKHGKLNEKTPQEWARN 428
LDK+GK NEKTP EW+ +
Sbjct: 385 LDKYGKPNEKTPPEWSHS 402
>gi|341878882|gb|EGT34817.1| hypothetical protein CAEBREN_15909 [Caenorhabditis brenneri]
Length = 442
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 250/382 (65%), Positives = 313/382 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F + + T +D SQWP+LLKNYD+LNVRT HYTP G SPLKR + +YI G NLD
Sbjct: 24 FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLD 83
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL KSQQGAGKEY+C
Sbjct: 84 KPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYIC 143
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH++V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+YE+K +EYD + + +
Sbjct: 144 IFKLHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGI 203
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
F CE+GTYVRT+CVHLGLILG GG MQELRR RSGI EN+NMVTMHDV+DAQ++ D
Sbjct: 204 FNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYILDT 263
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+Y+R ++ PLE LLT +KR+VVKD+ +NAICYGAK++IPG+LR+++DIEV +E+V+
Sbjct: 264 QKDESYMRHIVRPLEALLTQHKRVVVKDSCINAICYGAKILIPGVLRYDDDIEVNKEIVI 323
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+ + IA+M+T+ +A+ DHGVVA+ KRV+M+RD Y RKWGLGP AS KK+++ +
Sbjct: 324 MTTKGEAICIAIAQMSTSTIASVDHGVVAKSKRVIMERDVYGRKWGLGPVASKKKQMVKD 383
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
G LDK GK N TP+ WA+ V
Sbjct: 384 GLLDKFGKPNSSTPKSWAKEYV 405
>gi|383852398|ref|XP_003701715.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Megachile rotundata]
Length = 515
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 257/419 (61%), Positives = 326/419 (77%), Gaps = 12/419 (2%)
Query: 65 WPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
WP+L KN+DR+ RT H+TPL +G +PL R L +YI+ G INLDKP NPSSHEVVAWIKR
Sbjct: 40 WPLLFKNFDRMLTRTKHFTPLTSGSTPLHRSLSEYIKSGCINLDKPCNPSSHEVVAWIKR 99
Query: 125 ILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVAR 184
IL+VEKTGHSGTLDPKV+G LIVCIDRATRL KSQQ AGKEYV V +LH + KV++
Sbjct: 100 ILKVEKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVFKLHSAPESLQKVSQ 159
Query: 185 ALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
ALE L GA+FQRPPLISAVKRQLR+RT+Y+S L+YD +R++ VF +SCEAG+Y+RT+CV
Sbjct: 160 ALEKLRGALFQRPPLISAVKRQLRVRTVYDSWFLDYDNERNMGVFRVSCEAGSYIRTICV 219
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
HLGL LG G MQELRR RSG+ E D MVTMHD++DAQWLY+N+ DE+YLRRVI PLE
Sbjct: 220 HLGLFLGTGCQMQELRRNRSGVQSEKDGMVTMHDILDAQWLYENHGDESYLRRVIKPLEA 279
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
LL ++KR++VKD+ VNAICYGAK+M+PG+L +++ IE+ +E+V++TTKGEA+ALG+A MT
Sbjct: 280 LLVNHKRIIVKDSAVNAICYGAKIMLPGILMYDDGIELNQEIVIVTTKGEAIALGVALMT 339
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQE 424
+ M CDHGV A+IKRV+M+RD YPRKWGLGP+AS+KK++I EGKLDK+GK NE TP +
Sbjct: 340 SPTMTACDHGVAAKIKRVIMERDAYPRKWGLGPKASIKKRMIIEGKLDKYGKPNENTPSD 399
Query: 425 WARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPA--LNAKKAKVEE 481
W N +A A +T T KKRK + + PA ++ K+ K+E+
Sbjct: 400 WLAN----------YTDYSATAVKTEENGVTETAKKRKWEETVPQPAGDVSIKEEKIED 448
>gi|310792416|gb|EFQ27943.1| TruB family pseudouridylate synthase [Glomerella graminicola
M1.001]
Length = 473
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 273/380 (71%), Positives = 320/380 (84%), Gaps = 15/380 (3%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F IKPQ+ P +DTS WP+LLKNYD+ N PLKR + YI G+IN
Sbjct: 12 EEFAIKPQASLPQLDTSSWPLLLKNYDKRN--------------PLKRDIKSYISSGVIN 57
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAW+KR+LRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEY
Sbjct: 58 LDKPSNPSSHEVVAWVKRMLRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEY 117
Query: 167 VCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
V V RLHDK+P + ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRH
Sbjct: 118 VAVIRLHDKLPGGQVQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRH 177
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E MVT+HDV+DAQW
Sbjct: 178 LGVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDETKGMVTLHDVLDAQWT 237
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
DN RDE+YLR+VI PLE LLT YKR+VVKD+ VNA+CYGAKLM+PGLLR+E++IEV +E
Sbjct: 238 MDNTRDESYLRKVISPLETLLTGYKRIVVKDSAVNAVCYGAKLMLPGLLRYESEIEVHDE 297
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP AS KKKL
Sbjct: 298 VVLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPLASEKKKL 357
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ NE TP +W
Sbjct: 358 KADGKLDKYGRPNEATPAKW 377
>gi|145491600|ref|XP_001431799.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398905|emb|CAK64401.1| unnamed protein product [Paramecium tetraurelia]
Length = 448
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 262/382 (68%), Positives = 330/382 (86%), Gaps = 1/382 (0%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IK P ID+S WP+LLKNY+++N+ T HYTP+P+G +PLKRPL+++++YG+INLDK
Sbjct: 23 VIKSTHQGPKIDSSNWPLLLKNYEKMNILTSHYTPIPSGSTPLKRPLIEHLKYGVINLDK 82
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVV+WIKRIL+V+KTGHSGTLDPKVTG LIVC++RATRLVK+QQ AGKEYV +
Sbjct: 83 PSNPSSHEVVSWIKRILKVDKTGHSGTLDPKVTGALIVCLNRATRLVKAQQSAGKEYVGI 142
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLHD + AK+ +A++ LTGAVFQ+PP ISAVKR+LR+RTIYESKL EYD ++ L +F
Sbjct: 143 IRLHDAISSAAKLEKAIQDLTGAVFQKPPAISAVKRELRVRTIYESKLFEYDPEKRLGIF 202
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+SCEAGTYVRT+CVHLGL+LGVGGHM+ELRRVRSGIL EN MV+MHDV+DAQ+ Y+ +
Sbjct: 203 WMSCEAGTYVRTLCVHLGLLLGVGGHMEELRRVRSGILDENKYMVSMHDVLDAQYRYEKF 262
Query: 290 RDEAYLRRVIMPLEVLLTSYK-RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+YLR VI+PLEVLLT+YK R VVKD+TVNAICYGAKLM+PG+LRF++ I++G+E+VL
Sbjct: 263 KDESYLRHVIIPLEVLLTNYKRRQVVKDSTVNAICYGAKLMVPGVLRFDDKIDIGDEIVL 322
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+TTKGEA+A+ IA+MTT +A+CDHGVV + KRV+MDR+TYPRKWG GPRA KK LI E
Sbjct: 323 ITTKGEAIAVAIAQMTTGEIASCDHGVVCKSKRVIMDRETYPRKWGTGPRALRKKALIKE 382
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
G LD HGK N TPQ+W + V
Sbjct: 383 GLLDPHGKPNANTPQDWQQFYV 404
>gi|380013775|ref|XP_003690924.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Apis
florea]
Length = 517
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 244/364 (67%), Positives = 305/364 (83%)
Query: 65 WPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
WP+L KN+D++ RT H+TPL +G +PL R L +YI+ G INLDKP NPSSHEVVAWIKR
Sbjct: 41 WPLLFKNFDKMLTRTKHFTPLTSGSTPLHRTLSEYIKSGCINLDKPCNPSSHEVVAWIKR 100
Query: 125 ILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVAR 184
IL+VEKTGHSGTLDPKV+G LIVCIDRATRL KSQQ AGKEY+ V +LH + KV++
Sbjct: 101 ILKVEKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYIAVFKLHSAPESLQKVSQ 160
Query: 185 ALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
ALE L GA+FQRPPLISAVKRQLR+RT+Y+S L+YD +R++ VF +SCEAG+Y+RT+CV
Sbjct: 161 ALEKLRGALFQRPPLISAVKRQLRVRTVYDSWFLDYDEERNMGVFRVSCEAGSYIRTICV 220
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
HLGL LG G MQELRR RSG+ END MVTMHD++DAQWLY+N+ DE+YLRRVI PLE
Sbjct: 221 HLGLFLGTGCQMQELRRNRSGVQSENDGMVTMHDILDAQWLYENHGDESYLRRVIKPLEA 280
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
LL ++KR++VKD+ VNAICYGAK+M+PG+L +++ IE+ +E+V++TTKGEA+AL IA MT
Sbjct: 281 LLINHKRIIVKDSAVNAICYGAKIMLPGILMYDDGIELNQEIVIVTTKGEAIALAIALMT 340
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQE 424
+ M TCDHGV A+IKRV+M+RD YPRKWGLGP+AS+KK++I EGKLDK+GK NE TP +
Sbjct: 341 SPTMTTCDHGVAAKIKRVIMERDAYPRKWGLGPKASIKKRMIIEGKLDKYGKPNENTPAD 400
Query: 425 WARN 428
W N
Sbjct: 401 WLAN 404
>gi|322796794|gb|EFZ19221.1| hypothetical protein SINV_10049 [Solenopsis invicta]
Length = 497
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 243/375 (64%), Positives = 308/375 (82%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I+P + ++ WP+L KN+D++ RT H+TPL +G +PL R + +YI+ G INLDKP
Sbjct: 23 IEPSNVEVKLECKDWPLLFKNFDKMLTRTKHFTPLTSGSTPLNRSISEYIKSGCINLDKP 82
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
NPSSHEVVAWIK+IL+VEKTGHSGTLDPKV+G LIVCID+ATRL KSQQ AGKEY+ V
Sbjct: 83 CNPSSHEVVAWIKKILKVEKTGHSGTLDPKVSGCLIVCIDKATRLAKSQQSAGKEYIAVF 142
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+LH + KV +ALE L GA+FQRPPLISAVKRQLR+RT+Y+S +YD +R++ VF
Sbjct: 143 KLHSAPESIQKVNQALERLRGALFQRPPLISAVKRQLRVRTVYDSWFHDYDQERNMGVFR 202
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+SCEAG+Y+RTMCVHLGL LG G HMQELRR RSG+ END MVTMHD++DAQWLY+N+
Sbjct: 203 VSCEAGSYIRTMCVHLGLFLGTGCHMQELRRSRSGVQSENDGMVTMHDILDAQWLYENHG 262
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLRRVI PLE LL ++KR+++KD+ VNAICYGAK+M+PG+L ++ IE+ EE+V++T
Sbjct: 263 DESYLRRVIKPLEALLLNHKRIIIKDSAVNAICYGAKIMLPGVLMYDQGIELNEEIVIVT 322
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL +A M++ MA CDHGVVA++KRV+M+RD+YPRKWGLGP+AS KK++I EG
Sbjct: 323 TKGEAVALAVALMSSPTMAACDHGVVAKLKRVIMERDSYPRKWGLGPKASQKKRMIIEGS 382
Query: 411 LDKHGKLNEKTPQEW 425
LDKHGK NE TP EW
Sbjct: 383 LDKHGKPNENTPAEW 397
>gi|342183766|emb|CCC93245.1| putative centromere/microtubule binding protein cbf5 [Trypanosoma
congolense IL3000]
Length = 427
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 256/381 (67%), Positives = 313/381 (82%), Gaps = 3/381 (0%)
Query: 47 KDFIIK--PQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
+DF I Q ++ +WP+LLKNYD+LNVR+ H+T L G+SPL+RPL +Y++YG+
Sbjct: 13 EDFTIPLDGQRSECTLSPEEWPLLLKNYDKLNVRSSHFTLLECGWSPLRRPLTEYVKYGM 72
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKP+NPSSHEVV+WIKRILR EKTGH+GTLDPKVTG LI+CIDRATRLVKSQQ AGK
Sbjct: 73 INLDKPSNPSSHEVVSWIKRILRCEKTGHAGTLDPKVTGALIICIDRATRLVKSQQNAGK 132
Query: 165 EYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
Y+ V RLHD V + KV AL+ LTG FQRPPLI+AVKRQLRIR IY ++L+EYD R
Sbjct: 133 TYIGVLRLHDAVGE-KKVVAALQRLTGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKHR 191
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
HL VF CEAGTY+RT+CVHLGLILGVGGHM+ELRR+R+G++ E+D++ TMHDV+DAQW
Sbjct: 192 HLAVFETHCEAGTYIRTLCVHLGLILGVGGHMEELRRIRTGVITEDDHISTMHDVLDAQW 251
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
LYDN +DE YLRRVI+P E LLT+YKR+VVKD+ VNA+CYGAKLMIPGL RF+N IE +
Sbjct: 252 LYDNEKDETYLRRVILPCEYLLTNYKRVVVKDSAVNAVCYGAKLMIPGLARFDNGIERDD 311
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
+VLMTTKGEAVAL AEM+T+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+
Sbjct: 312 IIVLMTTKGEAVALAYAEMSTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPVAVKKRS 371
Query: 405 LIAEGKLDKHGKLNEKTPQEW 425
L+ +G LDK+G+ TP +W
Sbjct: 372 LVKDGLLDKYGRPQANTPSDW 392
>gi|261331934|emb|CBH14927.1| centromere/microtubule binding protein cbf5,putative [Trypanosoma
brucei gambiense DAL972]
Length = 427
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 252/378 (66%), Positives = 311/378 (82%), Gaps = 10/378 (2%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+++ P+ +WP+LLKNYDRLNVR+ H+T L G+SPL+RPL Y++YG+INL
Sbjct: 25 DYVLSPE---------EWPLLLKNYDRLNVRSSHFTVLDCGWSPLRRPLSQYVKYGMINL 75
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVV+WIKRIL+ EKTGH+GTLDPKVTG LI+CIDRATRLVKSQQ AGK Y+
Sbjct: 76 DKPSNPSSHEVVSWIKRILKCEKTGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYI 135
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
V RLHD V + KV AL+ LTG FQRPPLI+AVKRQLRIR IY ++L+EYD RHL
Sbjct: 136 GVLRLHDTVSE-KKVVAALQRLTGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKHRHLA 194
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VF CEAGTY+RT+CVHLGLILGVGGHM+ELRR+R+G++ E+D++ TMHDV+DAQWLYD
Sbjct: 195 VFETHCEAGTYIRTLCVHLGLILGVGGHMEELRRIRTGVISEDDHISTMHDVLDAQWLYD 254
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE YLRRVI+P E LLT+YKR+VVKD+ VNA+CYGAKLMIPGL RF+N IE + +V
Sbjct: 255 NEKDETYLRRVILPCEYLLTNYKRVVVKDSAVNAVCYGAKLMIPGLARFDNGIERDDVIV 314
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+AL AEM+T+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+ ++
Sbjct: 315 LMTTKGEAIALAYAEMSTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPVAVKKRTMMK 374
Query: 408 EGKLDKHGKLNEKTPQEW 425
+G LDK+G+ TP +W
Sbjct: 375 DGLLDKYGRPQANTPSDW 392
>gi|118357710|ref|XP_001012103.1| rRNA pseudouridine synthase, putative family protein [Tetrahymena
thermophila]
gi|89293870|gb|EAR91858.1| rRNA pseudouridine synthase, putative family protein [Tetrahymena
thermophila SB210]
Length = 424
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 251/383 (65%), Positives = 328/383 (85%), Gaps = 5/383 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DFI KP +D SQWP+LLKNYD++N+R+ HYTP+PNG +PL RP+ ++++YG++NL
Sbjct: 26 DFI-KPSKGGAKLDASQWPLLLKNYDKMNIRSSHYTPIPNGSNPLARPMEEHLKYGVMNL 84
Query: 108 DKPANPSSHEVVAWIKRIL----RVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
DKP+NPSSHEVVAW+K++ ++EKTGHSGTLDPKVTG LIVC++RATRLVK+QQ AG
Sbjct: 85 DKPSNPSSHEVVAWVKKLFENITKMEKTGHSGTLDPKVTGCLIVCLNRATRLVKAQQSAG 144
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYV + RLH+ + K+A+AL+ LTG +FQ+PPLISAVKR+LR+RTIYESKL+EY+ +
Sbjct: 145 KEYVGIVRLHNDIESELKLAKALQQLTGPLFQKPPLISAVKRELRVRTIYESKLIEYNPE 204
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
+ + + W+SCEAGTYVRT+CVHLGL+LG GGHM+ELRRVRSGIL EN +VTMHDV D+
Sbjct: 205 KKMGIIWMSCEAGTYVRTLCVHLGLLLGTGGHMEELRRVRSGILDENQYLVTMHDVKDSI 264
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
W Y +++DE+YLRRV++PLEVLLTS+ R+VVKD+TVN+ICYGAKLM+PG+LR++N+IE G
Sbjct: 265 WRYQHFKDESYLRRVVLPLEVLLTSFPRIVVKDSTVNSICYGAKLMLPGVLRYDNNIENG 324
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+EVVL+TTKGEA+A+ +A+MTT+ +ATCDHG+V + KRV+MDRD YP++WGLGPRA KK
Sbjct: 325 KEVVLITTKGEAIAVAVAQMTTSELATCDHGIVCKTKRVIMDRDLYPKRWGLGPRALRKK 384
Query: 404 KLIAEGKLDKHGKLNEKTPQEWA 426
LI EG LDKHGK N++TP +W
Sbjct: 385 NLIKEGLLDKHGKPNDQTPNDWT 407
>gi|340711128|ref|XP_003394132.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
subunit 4-like [Bombus terrestris]
Length = 517
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/450 (57%), Positives = 337/450 (74%), Gaps = 24/450 (5%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
++P S ++ WP+L KN+D++ RT H+TPL +G +PL R L +YI+ G INLDKP
Sbjct: 27 LEPSSEIVKLEYKDWPLLFKNFDKMLTRTKHFTPLTSGSTPLHRTLSEYIKSGCINLDKP 86
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
NPSSHEVVAWIKRIL+VEKTGHSGTLDPKV+G LIVCIDRATRL KSQQ AGKEY+ V
Sbjct: 87 CNPSSHEVVAWIKRILKVEKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYIAVF 146
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+LH + KV++ALE L GA+FQRPPLISAVKRQLR+RT+Y+S ++YD +R++ VF
Sbjct: 147 KLHSAPESLQKVSQALEKLRGALFQRPPLISAVKRQLRVRTVYDSWFVDYDEERNMGVFR 206
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+SCEAG+Y+RT+CVHLGL LG G MQELRR RSG+ END MVTMHD++DAQWLY+N+
Sbjct: 207 VSCEAGSYIRTICVHLGLFLGTGCQMQELRRNRSGVQSENDGMVTMHDILDAQWLYENHG 266
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLRRVI PLE LL ++KR++VKD+ VNAICYGAK+M+PG+L +++ IE+ +E+V++T
Sbjct: 267 DESYLRRVIKPLEALLVNHKRIIVKDSAVNAICYGAKIMLPGILMYDDGIELNQEIVIVT 326
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL IA MT+ M CDHGV A+IKRV+M+RD YPRKWGLGP+AS+KK++I EGK
Sbjct: 327 TKGEAVALAIALMTSPTMTACDHGVAAKIKRVIMERDAYPRKWGLGPKASIKKRMIIEGK 386
Query: 411 LDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSP 470
LDK+GK NE TP +W N A+ T +K + +GD+
Sbjct: 387 LDKYGKPNENTPADWLAN---------------------YADYSTPTIKT---EENGDTD 422
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDE 500
++ K+ E V E E T+K +KV++ E
Sbjct: 423 PMSKKRKWEETVSEPTDEVTIKEEKVEDLE 452
>gi|71746444|ref|XP_822277.1| centromere/microtubule binding protein [Trypanosoma brucei TREU927]
gi|70831945|gb|EAN77449.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 427
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 253/381 (66%), Positives = 313/381 (82%), Gaps = 3/381 (0%)
Query: 47 KDFII--KPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
+DF I + Q ++ +WP+LLKNYDRLNVR+ H+T L G+SPL+RPL Y++YG+
Sbjct: 13 EDFCIPLEGQHTDCALSPEEWPLLLKNYDRLNVRSSHFTVLDCGWSPLRRPLSQYVKYGM 72
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKP+NPSSHEVV+WIKRIL+ EKTGH+GTLDPKVTG LI+CIDRATRLVKSQQ AGK
Sbjct: 73 INLDKPSNPSSHEVVSWIKRILKCEKTGHAGTLDPKVTGALIICIDRATRLVKSQQNAGK 132
Query: 165 EYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
Y+ V RLHD V + KV +L+ LTG FQRPPLI+AVKRQLRIR IY ++L+EYD R
Sbjct: 133 TYIGVLRLHDTVSE-KKVVASLQRLTGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKHR 191
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
HL VF CEAGTY+RT+CVHLGLILGVGGHM+ELRR+R+G++ E+D++ TMHDV+DAQW
Sbjct: 192 HLAVFETHCEAGTYIRTLCVHLGLILGVGGHMEELRRIRTGVISEDDHISTMHDVLDAQW 251
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
LYDN +DE YLRRVI+P E LLT+YKR+VVKD+ VNA+CYGAKLMIPGL RF+N IE +
Sbjct: 252 LYDNEKDETYLRRVILPCEYLLTNYKRVVVKDSAVNAVCYGAKLMIPGLARFDNGIERDD 311
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
+VLMTTKGEA+AL AEM+T+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+
Sbjct: 312 VIVLMTTKGEAIALAYAEMSTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPVAVKKRT 371
Query: 405 LIAEGKLDKHGKLNEKTPQEW 425
++ +G LDK+G+ TP +W
Sbjct: 372 MMKDGLLDKYGRPQANTPSDW 392
>gi|124808563|ref|XP_001348347.1| pseudouridine synthase, putative [Plasmodium falciparum 3D7]
gi|23497239|gb|AAN36786.1| pseudouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 466
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 245/381 (64%), Positives = 310/381 (81%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ I+P+ +IDTS WP+LLKNYD+LN+RT H+TPLP G SP R + +Y++YGIINL
Sbjct: 7 DYKIEPERKEAAIDTSNWPLLLKNYDKLNIRTSHFTPLPMGNSPYSRNIEEYLKYGIINL 66
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKEYV
Sbjct: 67 DKPSNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYV 126
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV + H K + +V L GA+FQRPPLI AVKRQLR+RTIY+SKLL+YD ++
Sbjct: 127 CVCKFHSKPKSIEEVKLVLNNFQGAIFQRPPLICAVKRQLRVRTIYDSKLLDYDETNNVC 186
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+ C+AGTY+RT+C H+GL+LGVG HMQELRRV+SG + E DNM T+HD++DAQ++YD
Sbjct: 187 VFWVKCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQYIYD 246
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
DE+YLR++I PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I+V E+V
Sbjct: 247 TTGDESYLRKIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVNTEIV 306
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
+MTTKGEAVAL IA+MT+ V+AT DHGVV+ KRV+MDRDTY KWG G R+ KKKLI
Sbjct: 307 IMTTKGEAVALAIAQMTSTVIATVDHGVVSLTKRVIMDRDTYDVKWGFGNRSMEKKKLIL 366
Query: 408 EGKLDKHGKLNEKTPQEWARN 428
G LDK+GK NEKTP W ++
Sbjct: 367 AGLLDKYGKPNEKTPLSWIKS 387
>gi|156102170|ref|XP_001616778.1| tRNA pseudouridine synthase [Plasmodium vivax Sal-1]
gi|148805652|gb|EDL47051.1| tRNA pseudouridine synthase, putative [Plasmodium vivax]
Length = 478
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 255/425 (60%), Positives = 321/425 (75%), Gaps = 2/425 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I+P+ IDTS WP+LL+NYD+LNVR+ H+TPLP G SP R L +Y++YGIINLDKP
Sbjct: 16 IEPERKEAVIDTSNWPLLLRNYDKLNVRSSHFTPLPMGNSPYSRNLEEYLKYGIINLDKP 75
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKEYVCV
Sbjct: 76 SNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVC 135
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+ H K + +V L GA+FQRPPLI AVKRQLR+RTIY+SKLL+YD ++ VFW
Sbjct: 136 KFHSKPKSLEEVKLVLNNFHGAIFQRPPLICAVKRQLRVRTIYDSKLLDYDDTNNVCVFW 195
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+ C+AGTY+RT+C H+GL+LGVG HMQELRRV+SG + E DNM T+HD++DAQ +YD
Sbjct: 196 VKCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQHVYDTTG 255
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE YLRR+I PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I++ E+VLMT
Sbjct: 256 DETYLRRIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDMYAEIVLMT 315
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL IA+MT +V+AT DHGVVA KRV+MDRDTY KWG G R+ KKKLI G
Sbjct: 316 TKGEAVALAIAQMTASVIATVDHGVVALTKRVIMDRDTYDVKWGFGTRSMEKKKLILAGL 375
Query: 411 LDKHGKLNEKTPQEWARNVVLPPG--GDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
LDKHGK NEKTP W ++ P GD+ + +L A ++ V + G
Sbjct: 376 LDKHGKPNEKTPLSWIKSEGYVPKLVGDTAIYTLNADGSNNEVQENAKNVGGDNNNPVGG 435
Query: 469 SPALN 473
+ + N
Sbjct: 436 TSSFN 440
>gi|67467818|ref|XP_649989.1| centromere/microtubule binding protein cbf5 [Entamoeba histolytica
HM-1:IMSS]
gi|56466528|gb|EAL44603.1| centromere/microtubule binding protein cbf5, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407042015|gb|EKE41074.1| rRNA pseudouridine synthase [Entamoeba nuttalli P19]
Length = 484
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 247/382 (64%), Positives = 309/382 (80%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP + D S WP+LL+N+D+L ++TGHYTP G SP+ RP+ ++ +YGIINL
Sbjct: 3 DFVIKPSEEKSTPDYSSWPLLLQNFDQLEIKTGHYTPASAGNSPINRPISEHFKYGIINL 62
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KRIL+VEKTGHSGTLDP VTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 63 DKPANPSSHEVVAWLKRILKVEKTGHSGTLDPAVTGCLIVCIDRATRLVKSQQDAGKEYV 122
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ + H+ + D +V + LTGA+FQ PP+I+AVKR LRIRTIY ++LLE D L
Sbjct: 123 CICKFHEAISDEQQVKTVINTLTGALFQLPPVIAAVKRSLRIRTIYNTELLEVDKKEGLA 182
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+F C+AGTY+RT+CVHLG ++G G HM+ELRRVRSG L E DNMVT+HDV+DA +LY+
Sbjct: 183 LFRTQCQAGTYMRTLCVHLGYLMGCGAHMEELRRVRSGNLTEKDNMVTLHDVLDAMYLYE 242
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N+ DE+Y+R + PLE LLT YK++VVKD++VNAICYGAKLM+PGLLR+ I + E VV
Sbjct: 243 NHGDESYIRHCVRPLETLLTKYKKIVVKDSSVNAICYGAKLMVPGLLRYSKGITMNEIVV 302
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMT+KGEA+ALGIA+MT+ M TC++GVVA IKRV+MD+D YPRKWGLGP A KKKL+A
Sbjct: 303 LMTSKGEAIALGIAKMTSEEMITCEYGVVATIKRVIMDKDLYPRKWGLGPHAQQKKKLVA 362
Query: 408 EGKLDKHGKLNEKTPQEWARNV 429
EGKL+K+GK N+KTP E+ + V
Sbjct: 363 EGKLEKYGKPNDKTPAEYLKEV 384
>gi|449707537|gb|EMD47184.1| rRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 482
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 247/382 (64%), Positives = 309/382 (80%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP + D S WP+LL+N+D+L ++TGHYTP G SP+ RP+ ++ +YGIINL
Sbjct: 3 DFVIKPSEEKSTPDYSSWPLLLQNFDQLEIKTGHYTPASAGNSPINRPISEHFKYGIINL 62
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KRIL+VEKTGHSGTLDP VTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 63 DKPANPSSHEVVAWLKRILKVEKTGHSGTLDPAVTGCLIVCIDRATRLVKSQQDAGKEYV 122
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ + H+ + D +V + LTGA+FQ PP+I+AVKR LRIRTIY ++LLE D L
Sbjct: 123 CICKFHEAISDEQQVKTVINTLTGALFQLPPVIAAVKRSLRIRTIYNTELLEVDKKEGLA 182
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+F C+AGTY+RT+CVHLG ++G G HM+ELRRVRSG L E DNMVT+HDV+DA +LY+
Sbjct: 183 LFRTQCQAGTYMRTLCVHLGYLMGCGAHMEELRRVRSGNLTEKDNMVTLHDVLDAMYLYE 242
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N+ DE+Y+R + PLE LLT YK++VVKD++VNAICYGAKLM+PGLLR+ I + E VV
Sbjct: 243 NHGDESYIRHCVRPLETLLTKYKKIVVKDSSVNAICYGAKLMVPGLLRYSKGITMNEIVV 302
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMT+KGEA+ALGIA+MT+ M TC++GVVA IKRV+MD+D YPRKWGLGP A KKKL+A
Sbjct: 303 LMTSKGEAIALGIAKMTSEEMITCEYGVVATIKRVIMDKDLYPRKWGLGPHAQQKKKLVA 362
Query: 408 EGKLDKHGKLNEKTPQEWARNV 429
EGKL+K+GK N+KTP E+ + V
Sbjct: 363 EGKLEKYGKPNDKTPAEYLKEV 384
>gi|302421366|ref|XP_003008513.1| centromere/microtubule-binding protein CBF5 [Verticillium
albo-atrum VaMs.102]
gi|261351659|gb|EEY14087.1| centromere/microtubule-binding protein CBF5 [Verticillium
albo-atrum VaMs.102]
Length = 459
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 257/380 (67%), Positives = 310/380 (81%), Gaps = 21/380 (5%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+++ IKPQ+ TP +DTS WP+LLKNYD+ N PLKR + YI G+IN
Sbjct: 12 EEYSIKPQAATPQLDTSSWPLLLKNYDKRN--------------PLKRDIKSYISSGVIN 57
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAW+KR+LR + H + K + IDRATRLVKSQQGAGKEY
Sbjct: 58 LDKPSNPSSHEVVAWLKRMLRFNASRHPDPIANKPS------IDRATRLVKSQQGAGKEY 111
Query: 167 VCVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
VCV RLHDK+P + ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESK++E+D DRH
Sbjct: 112 VCVIRLHDKLPGGQVQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKVIEFDNDRH 171
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN +VT+HDV+DAQW
Sbjct: 172 LGVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENKGLVTLHDVLDAQWT 231
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
DN RDE+YLRRVI PLE LLTSYKR+VVKD+ VNA+CYGAKLM+PGLLR+E++IEV +E
Sbjct: 232 MDNTRDESYLRRVISPLETLLTSYKRVVVKDSAVNAVCYGAKLMLPGLLRYESEIEVHDE 291
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VV+MTTKGEA+ALGIA+M+T M+TCDHGVVA+IKR +M+RD YPRKWGLGP+AS KKK+
Sbjct: 292 VVMMTTKGEAIALGIAQMSTVEMSTCDHGVVAKIKRCIMERDLYPRKWGLGPQASEKKKM 351
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ NE TP +W
Sbjct: 352 KADGKLDKYGRPNEATPAKW 371
>gi|68067978|ref|XP_675908.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495353|emb|CAH99624.1| conserved hypothetical protein [Plasmodium berghei]
Length = 456
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 247/381 (64%), Positives = 308/381 (80%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
++ I+P+ +ID S WP+LLKNYD+LN+R+ H+TPLP G SP R L +Y++YGIINL
Sbjct: 5 EYKIEPEKKEATIDASNWPLLLKNYDKLNIRSSHFTPLPMGNSPYSRNLKEYLKYGIINL 64
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKEYV
Sbjct: 65 DKPSNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYV 124
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV + H K + +V L GA+FQRPPLI AVKRQLR+RTIYESKLL+YD +L
Sbjct: 125 CVCKFHSKPKSIEEVKLVLNNFQGAIFQRPPLICAVKRQLRVRTIYESKLLDYDDTNNLC 184
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+ C+AGTY+RT+C H+GL+LGVG HMQELRRV+SG + E DNM T+HD+MDAQ++YD
Sbjct: 185 VFWVRCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDIMDAQYIYD 244
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
DE YLR++I PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I+V E+V
Sbjct: 245 TTGDETYLRKIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVYSEIV 304
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEAVAL IA+MT+ V+AT DHG+VA KRV+MDRDTY KWG G R+ KKKLI
Sbjct: 305 LMTTKGEAVALAIAQMTSTVIATVDHGIVALTKRVIMDRDTYDVKWGFGNRSMEKKKLIL 364
Query: 408 EGKLDKHGKLNEKTPQEWARN 428
G LDK+GK NEKTP W ++
Sbjct: 365 AGLLDKYGKPNEKTPISWIKS 385
>gi|350405648|ref|XP_003487505.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Bombus
impatiens]
Length = 517
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 243/378 (64%), Positives = 310/378 (82%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
++P + ++ WP+L KN+D++ RT H+TPL +G +PL R L +YI+ G INLDKP
Sbjct: 27 LEPSNEIVKLEYKDWPLLFKNFDKMLTRTKHFTPLTSGSTPLHRTLSEYIKSGCINLDKP 86
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
NPSSHEVVAWIKRIL+VEKTGHSGTLDPKV+G LIVCIDRATRL KSQQ AGKEY+ V
Sbjct: 87 CNPSSHEVVAWIKRILKVEKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYIAVF 146
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+LH + KV++ALE L GA+FQRPPLISAVKRQLR+RT+Y+S ++YD +R++ VF
Sbjct: 147 KLHSAPESLQKVSQALEKLRGALFQRPPLISAVKRQLRVRTVYDSWFIDYDEERNMGVFR 206
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+SCEAG+Y+RT+CVHLGL LG G MQELRR RSG+ END MVTMHD++DAQWLY+N+
Sbjct: 207 VSCEAGSYIRTICVHLGLFLGTGCQMQELRRNRSGVQSENDGMVTMHDILDAQWLYENHG 266
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLRRVI PLE LL ++KR++VKD+ VNAICYGAK+M+PG+L +++ IE+ +E+V++T
Sbjct: 267 DESYLRRVIKPLEALLVNHKRIIVKDSAVNAICYGAKIMLPGILMYDDGIELNQEIVIVT 326
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEA+AL IA MT+ M CDHGV A+IKRV+M+RD YPRKWGLGP+AS+KK++I EGK
Sbjct: 327 TKGEAIALAIALMTSPTMTACDHGVAAKIKRVIMERDAYPRKWGLGPKASIKKRMIIEGK 386
Query: 411 LDKHGKLNEKTPQEWARN 428
LDK+GK NE TP +W N
Sbjct: 387 LDKYGKPNENTPADWLAN 404
>gi|307172272|gb|EFN63777.1| H/ACA ribonucleoprotein complex subunit 4 [Camponotus floridanus]
Length = 514
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 244/378 (64%), Positives = 309/378 (81%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I+P ++ WP+L KN+D++ RT H+TPL +G +PL R L +YI+ G INLDKP
Sbjct: 25 IEPSLVEVKLEYKDWPLLFKNFDKMLTRTKHFTPLTSGSTPLHRSLSEYIKSGCINLDKP 84
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
NPSSHEVVAWIKRILRVEKTGHSGTLDPKV+G LIVCIDRATRL KSQQ AGKEYV V
Sbjct: 85 CNPSSHEVVAWIKRILRVEKTGHSGTLDPKVSGCLIVCIDRATRLAKSQQSAGKEYVAVF 144
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+LH + KV ++LE L GA+FQRPPLISAVKRQLR+RT+YE++LL+Y+ + ++ VF
Sbjct: 145 KLHSAPESILKVKQSLEKLHGALFQRPPLISAVKRQLRVRTVYENELLDYNKETNMGVFR 204
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+SCEAG+Y+RTMCVHLGL +G G +MQELRR+RSG+ E D MVTMHD++DAQWLYDN+
Sbjct: 205 VSCEAGSYIRTMCVHLGLYVGTGANMQELRRIRSGVQSEKDAMVTMHDILDAQWLYDNHG 264
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLRRVI PLEVLL ++KR+++KD+ VNAICYGAK+M+PG++ ++ IE+ +E+V++T
Sbjct: 265 DESYLRRVIKPLEVLLMNHKRVILKDSAVNAICYGAKIMLPGVIMYDQGIELNQEIVIVT 324
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL IA MT+ MA CDHGV A+IKRV+M+RD+YPRKWGLGP+A KK++I EG
Sbjct: 325 TKGEAVALAIALMTSPTMAACDHGVAAKIKRVIMERDSYPRKWGLGPKALQKKRMILEGT 384
Query: 411 LDKHGKLNEKTPQEWARN 428
LDK+GK NE TP W +N
Sbjct: 385 LDKYGKPNENTPTGWLQN 402
>gi|440300243|gb|ELP92732.1| H/ACA ribonucleoprotein complex subunit, putative [Entamoeba
invadens IP1]
Length = 473
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 251/382 (65%), Positives = 312/382 (81%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP + D S+WP LLKNYD+L +R+G YTP G SP RPL ++++YGIINL
Sbjct: 3 DFVIKPSDEKTTPDYSKWPYLLKNYDQLEIRSGQYTPASAGNSPTNRPLKEHLKYGIINL 62
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KRIL+VEKTGHSGTLDP VTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 63 DKPANPSSHEVVAWLKRILKVEKTGHSGTLDPAVTGCLIVCIERATRLVKSQQDAGKEYV 122
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV + H + D K+ ++ LTGA+FQ PP+I+AVKR LRIRTIY++++LE D ++ L
Sbjct: 123 CVCKFHSPIEDEKKMEMTIKTLTGALFQLPPVIAAVKRTLRIRTIYKTEVLEMDKEQGLA 182
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+F C+AGTY+RT+CVHLG + G G HM+ELRRVRSG L E D+MVT+HDVMD+ +LY+
Sbjct: 183 LFRTECQAGTYMRTLCVHLGYLSGTGAHMEELRRVRSGNLCEKDDMVTLHDVMDSMYLYE 242
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N+ DE+YLR + PLE LLT+YKR+VVKD+TVNAICYGAKLMIPGLLR+ DI + E VV
Sbjct: 243 NHGDESYLRYCVKPLEKLLTNYKRIVVKDSTVNAICYGAKLMIPGLLRYAKDITMNEIVV 302
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEA+ALGIA+MT+ M++C +GVVA IKRV+MD+D YPRKWGLGP A KKKL+A
Sbjct: 303 LMTTKGEAIALGIAKMTSEEMSSCQYGVVAAIKRVIMDKDLYPRKWGLGPFAQQKKKLVA 362
Query: 408 EGKLDKHGKLNEKTPQEWARNV 429
EGKL+K+GK +KTP E+ ++V
Sbjct: 363 EGKLEKYGKPTDKTPAEYTKSV 384
>gi|398015080|ref|XP_003860730.1| centromere/microtubule binding protein cbf5, putative [Leishmania
donovani]
gi|322498952|emb|CBZ34025.1| centromere/microtubule binding protein cbf5, putative [Leishmania
donovani]
Length = 430
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/425 (60%), Positives = 330/425 (77%), Gaps = 9/425 (2%)
Query: 46 AKDFIIKP--QSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
++DF I + ++ +WP+LLKNYD++NVR+ H+T L G+SPL+RPL +YI+YG
Sbjct: 12 SEDFCIPAGDRDANSALPAEEWPLLLKNYDKMNVRSTHFTLLECGWSPLRRPLAEYIKYG 71
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+IN+DKP+NPSSHEVV+WIKRIL+ +KTGH+GTLDPKVTG LI+C DRATRLVKSQQ AG
Sbjct: 72 MINMDKPSNPSSHEVVSWIKRILKCDKTGHAGTLDPKVTGALIICTDRATRLVKSQQNAG 131
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
K Y+ V RLHD V KV AL+ LTG FQRPPLI+AVKRQLRIR IY ++L+EYD
Sbjct: 132 KTYIGVLRLHDTVSQ-KKVNAALQRLTGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKH 190
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL VF CEAGTY+RT+CVHLGLILG GGHM+ELRR+R+G++ END++ TMHDVMDAQ
Sbjct: 191 RHLAVFETHCEAGTYIRTLCVHLGLILGAGGHMEELRRIRTGVITENDHLSTMHDVMDAQ 250
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
WLY+N RD+ YLRRVI+P E LL+++KR+VVKD+ VNA+CYGAKLMIPGL RF+N IE
Sbjct: 251 WLYENERDDTYLRRVILPCEYLLSNHKRIVVKDSAVNAVCYGAKLMIPGLARFDNGIERD 310
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+ VVLMTTKGEA+AL AEMTT+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+
Sbjct: 311 DVVVLMTTKGEAIALAYAEMTTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPIAVKKR 370
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
++ +G LDK+G+ TP +W + GG V + A + A + +GVK++++
Sbjct: 371 SMMKDGLLDKYGRPQSNTPPDW---FYVDYGG---VKTNAEGVQYGQAPSKVSGVKRQRV 424
Query: 464 DASGD 468
S D
Sbjct: 425 PDSDD 429
>gi|167386693|ref|XP_001737869.1| H/ACA ribonucleoprotein complex subunit [Entamoeba dispar SAW760]
gi|165899178|gb|EDR25832.1| H/ACA ribonucleoprotein complex subunit, putative [Entamoeba dispar
SAW760]
Length = 490
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 245/382 (64%), Positives = 308/382 (80%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP + D S WP+LL+N+D+L ++TGHYTP G SP+ RP+ ++ +YGIINL
Sbjct: 3 DFVIKPSDEKSTPDYSSWPLLLQNFDQLEIKTGHYTPASAGNSPINRPISEHFKYGIINL 62
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVVAW+KRIL+VEKTGHSGTLDP VTG LIVCIDRATRLVKSQQ AGKEYV
Sbjct: 63 DKPANPSSHEVVAWLKRILKVEKTGHSGTLDPAVTGCLIVCIDRATRLVKSQQDAGKEYV 122
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ + H+ + D +V + LTGA+FQ PP+I+AVKR LRIRTIY ++LLE D
Sbjct: 123 CICKFHEAISDEQQVKTVINTLTGALFQLPPVIAAVKRSLRIRTIYNTELLEVDKKEGFA 182
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+F C+AGTY+RT+CVHLG ++G G HM+ELRRVRSG L E DNMVT+HDV+DA +LY+
Sbjct: 183 LFRTQCQAGTYMRTLCVHLGYLMGCGAHMEELRRVRSGNLTEKDNMVTLHDVLDAMYLYE 242
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N+ DE+Y+R + PLE LLT YK++VVKD++VNAICYGAKLM+PGLLR+ I + E VV
Sbjct: 243 NHGDESYIRHCVRPLETLLTKYKKIVVKDSSVNAICYGAKLMVPGLLRYSKGITMNEVVV 302
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMT+KGEA+ALGIA+MT+ M TC++GVVA IKRV+MD+D YPRKWGLGP A KKKL+A
Sbjct: 303 LMTSKGEAIALGIAKMTSEEMITCEYGVVATIKRVIMDKDLYPRKWGLGPHAQQKKKLVA 362
Query: 408 EGKLDKHGKLNEKTPQEWARNV 429
EGKL+K+GK N+KTP ++ + V
Sbjct: 363 EGKLEKYGKPNDKTPADYLKEV 384
>gi|401421911|ref|XP_003875444.1| centromere/microtubule binding protein cbf5,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322491681|emb|CBZ26954.1| centromere/microtubule binding protein cbf5,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 430
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/425 (60%), Positives = 330/425 (77%), Gaps = 9/425 (2%)
Query: 46 AKDFIIKP--QSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
++DF I + ++ +WP+LLKNYD++NVR+ H+T L G+SPL+RPL +YI+YG
Sbjct: 12 SEDFCIPAGDRDGNSALPAEEWPLLLKNYDKMNVRSTHFTLLECGWSPLRRPLAEYIKYG 71
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+IN+DKP+NPSSHEVV+WIKRIL+ +KTGH+GTLDPKVTG LI+C DRATRLVKSQQ AG
Sbjct: 72 MINMDKPSNPSSHEVVSWIKRILKCDKTGHAGTLDPKVTGALIICTDRATRLVKSQQNAG 131
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
K YV V RLHD V KV AL+ LTG FQRPPLI+AVKRQLRIR IY ++L+EYD
Sbjct: 132 KTYVGVLRLHDTVSQ-KKVDAALQRLTGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKH 190
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL VF CEAGTY+RT+CVHLGLILG GGHM+ELRR+R+G++ END++ TMHDVMDAQ
Sbjct: 191 RHLAVFETHCEAGTYIRTLCVHLGLILGAGGHMEELRRIRTGVITENDHLSTMHDVMDAQ 250
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
WLY+N +D+ YLRRVI+P E LL+++KR+VVKD+ VNA+CYGAKLMIPGL RF+N IE
Sbjct: 251 WLYENEKDDTYLRRVILPCEYLLSNHKRIVVKDSAVNAVCYGAKLMIPGLARFDNGIERD 310
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+ VVLMTTKGEA+AL AEMTT+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+
Sbjct: 311 DVVVLMTTKGEAIALAYAEMTTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPIAVKKR 370
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
++ +G LDK+G+ TP +W + GG V + A + A + +GVK++++
Sbjct: 371 SMMKDGLLDKYGRPQSNTPSDW---FYVDYGG---VKTNAEGVQYGQAPSKVSGVKRQRV 424
Query: 464 DASGD 468
S D
Sbjct: 425 PDSDD 429
>gi|146086157|ref|XP_001465473.1| putative centromere/microtubule binding protein cbf5 [Leishmania
infantum JPCM5]
gi|134069571|emb|CAM67894.1| putative centromere/microtubule binding protein cbf5 [Leishmania
infantum JPCM5]
Length = 430
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/420 (61%), Positives = 328/420 (78%), Gaps = 9/420 (2%)
Query: 46 AKDFIIKP--QSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
++DF I + ++ +WP+LLKNYD++NVR+ H+T L G+SPL+RPL +YI+YG
Sbjct: 12 SEDFCIPAGDRDANSALPAEEWPLLLKNYDKMNVRSTHFTLLECGWSPLRRPLAEYIKYG 71
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+IN+DKP+NPSSHEVV+WIKRIL+ +KTGH+GTLDPKVTG LI+C DRATRLVKSQQ AG
Sbjct: 72 MINMDKPSNPSSHEVVSWIKRILKCDKTGHAGTLDPKVTGALIICTDRATRLVKSQQNAG 131
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
K Y+ V RLHD V KV AL+ LTG FQRPPLI+AVKRQLRIR IY ++L+EYD
Sbjct: 132 KTYIGVLRLHDTVSQ-KKVNAALQRLTGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKH 190
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL VF CEAGTY+RT+CVHLGLILG GGHM+ELRR+R+G++ END++ TMHDVMDAQ
Sbjct: 191 RHLAVFETHCEAGTYIRTLCVHLGLILGAGGHMEELRRIRTGVITENDHLSTMHDVMDAQ 250
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
WLY+N RD+ YLRRVI+P E LL+++KR+VVKD+ VNA+CYGAKLMIPGL RF+N IE
Sbjct: 251 WLYENERDDTYLRRVILPCEYLLSNHKRIVVKDSAVNAVCYGAKLMIPGLARFDNGIERD 310
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+ VVLMTTKGEA+AL AEMTT+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+
Sbjct: 311 DVVVLMTTKGEAIALAYAEMTTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPIAVKKR 370
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
++ +G LDK+G+ TP +W + GG V + A + A + +GVK++++
Sbjct: 371 SMMKDGLLDKYGRPQSNTPPDW---FYVDYGG---VKTNAEGVQYGQAPSKVSGVKRQRV 424
>gi|391342420|ref|XP_003745518.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
[Metaseiulus occidentalis]
Length = 457
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/383 (65%), Positives = 312/383 (81%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF I+P S P++DTSQWP+LLKN+D+L +RT HYTP+P G SPLKR L DY+ G IN
Sbjct: 32 QDFRIEPSSVAPTLDTSQWPLLLKNFDKLIIRTNHYTPVPQGASPLKRSLKDYLSSGYIN 91
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVV+WIKRIL+VEKTGHSGTLDPK +G L+VCIDRATRLVKSQQ AGKEY
Sbjct: 92 LDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKTSGCLVVCIDRATRLVKSQQSAGKEY 151
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + +LH+K VAKV + +E L GA+FQRPPLI+AVKRQLR+RT+YE KLLEYD +++
Sbjct: 152 VGIFQLHEKPESVAKVYQVVEKLQGALFQRPPLIAAVKRQLRVRTVYEQKLLEYDEEKNS 211
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+ W+SCEAGTYVRT CVH+GL+ G GG M ELRR RSG E D MVTMHD+ DA + Y
Sbjct: 212 GIVWMSCEAGTYVRTSCVHIGLLCGTGGIMTELRRCRSGTNRETDTMVTMHDIKDAMYAY 271
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
+N RDE+YLRRV+ PLE LLT KR+V+KD++VNAICYGAK+M+PG+LR++ I++ +EV
Sbjct: 272 ENNRDESYLRRVVRPLEGLLTDKKRIVMKDSSVNAICYGAKIMLPGVLRYDAGIDLNDEV 331
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
V+MTTKGEA+ L IA MT++ +A+ DHG VA+IKRVVM+RD YPR WGLG A KK LI
Sbjct: 332 VVMTTKGEAICLAIALMTSSTIASVDHGCVAKIKRVVMERDVYPRSWGLGKAALAKKLLI 391
Query: 407 AEGKLDKHGKLNEKTPQEWARNV 429
+EGKLDK+GK NE+TP + V
Sbjct: 392 SEGKLDKYGKPNERTPANYVEGV 414
>gi|221060356|ref|XP_002260823.1| tRNA pseudouridine synthase [Plasmodium knowlesi strain H]
gi|193810897|emb|CAQ42795.1| tRNA pseudouridine synthase, putative [Plasmodium knowlesi strain
H]
Length = 475
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 250/394 (63%), Positives = 314/394 (79%), Gaps = 2/394 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I+P+ IDTS WP+LLKNYD+LNVR+ H+TPLP G SP R L +Y++YGIINLDKP
Sbjct: 12 IEPERKEAVIDTSNWPLLLKNYDKLNVRSSHFTPLPMGNSPYSRNLEEYLKYGIINLDKP 71
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKEYVCV
Sbjct: 72 SNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVC 131
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+ H K + +V L GA+FQRPPLI AVKRQLR+RTIY+SKLL++D ++ VFW
Sbjct: 132 KFHSKPKSLEEVKLVLNNFHGAIFQRPPLICAVKRQLRVRTIYDSKLLDFDDANNVCVFW 191
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+ C+AGTY+RT+C H+GL+LGVG HMQELRRV+SG + E DNM T+HD++DAQ +YD
Sbjct: 192 VKCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQHVYDTTG 251
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLR++I PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I+V EVVLMT
Sbjct: 252 DESYLRKIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVNSEVVLMT 311
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL IA+MT++V+AT DHGVV+ KRV+MDRDTY KWG G R+ KKKLI G
Sbjct: 312 TKGEAVALAIAQMTSSVIATVDHGVVSLTKRVIMDRDTYDVKWGYGTRSMEKKKLILAGL 371
Query: 411 LDKHGKLNEKTPQEWARNVVLPPG--GDSVVASL 442
LDK+GK NEKTP W ++ P GD+ + +L
Sbjct: 372 LDKYGKPNEKTPLSWIKSEGYVPKLVGDTAIYTL 405
>gi|157869178|ref|XP_001683141.1| putative centromere/microtubule binding protein cbf5 [Leishmania
major strain Friedlin]
gi|68224024|emb|CAJ05101.1| putative centromere/microtubule binding protein cbf5 [Leishmania
major strain Friedlin]
Length = 430
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/425 (60%), Positives = 329/425 (77%), Gaps = 9/425 (2%)
Query: 46 AKDFIIKP--QSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
++DF I + ++ +WP+LLKNYD++NVR+ H+T L G+SPL+RPL +YI+YG
Sbjct: 12 SEDFCIPAGDRDANSALPAEEWPLLLKNYDKMNVRSTHFTLLECGWSPLRRPLAEYIKYG 71
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+IN+DKP+NPSSHEVV+WIKRIL+ +KTGH+GTLDPKVTG LI+C DRATRLVKSQQ AG
Sbjct: 72 MINMDKPSNPSSHEVVSWIKRILKCDKTGHAGTLDPKVTGALIICTDRATRLVKSQQNAG 131
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
K Y+ V RLHD V KV AL+ LTG FQRPPLI+AVKRQLRIR IY ++L+EYD
Sbjct: 132 KTYIGVLRLHDTVSQ-KKVDAALQRLTGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKH 190
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL VF CEAGTY+RT+CVH+GLILG GGHM+ELRR+R+G++ END++ TMHDVMDAQ
Sbjct: 191 RHLAVFETHCEAGTYIRTLCVHVGLILGAGGHMEELRRIRTGVITENDHLSTMHDVMDAQ 250
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
WLY+N +D+ YLRRVI+P E LL+++KR+VVKD+ VNA+CYGAKLMIPGL RF+N IE
Sbjct: 251 WLYENEKDDTYLRRVILPCEYLLSNHKRIVVKDSAVNAVCYGAKLMIPGLARFDNGIERD 310
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+ VVLMTTKGEA+AL AEMTT+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+
Sbjct: 311 DVVVLMTTKGEAIALAYAEMTTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPIAVKKR 370
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
++ +G LDK+G+ TP +W + GG V + A + A + GVK++++
Sbjct: 371 SMMKDGLLDKYGRPQSNTPSDW---FYVDYGG---VKTNAEGVQYGQAPSKVGGVKRQRV 424
Query: 464 DASGD 468
S D
Sbjct: 425 PDSDD 429
>gi|389585788|dbj|GAB68518.1| tRNA pseudouridine synthase [Plasmodium cynomolgi strain B]
Length = 450
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/394 (63%), Positives = 313/394 (79%), Gaps = 2/394 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I+P+ IDTS WP+LLKNYD+LNVR+ H+TPLP G SP R L +Y++YGIINLDKP
Sbjct: 12 IEPERKEAVIDTSNWPLLLKNYDKLNVRSSHFTPLPMGNSPYSRNLEEYLKYGIINLDKP 71
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKEYVCV
Sbjct: 72 SNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYVCVC 131
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+ H K + +V L GA+FQRPPLI AVKRQLR+RTIY+SKLL+YD ++ VFW
Sbjct: 132 KFHSKPKSLEEVKLVLNNFHGAIFQRPPLICAVKRQLRVRTIYDSKLLDYDDANNVCVFW 191
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+ C+AGTY+RT+C H+GL+LGVG HMQELRRV+SG + E DNM T+HD++DAQ +YD
Sbjct: 192 VKCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQHVYDTTG 251
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE YLR++I PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I+V E+VLMT
Sbjct: 252 DETYLRKIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVNSEIVLMT 311
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVAL IA+MT++V+AT DHGVV+ KRV+MDRDTY KWG G R+ KKKLI G
Sbjct: 312 TKGEAVALAIAQMTSSVIATVDHGVVSLTKRVIMDRDTYDVKWGYGTRSMEKKKLILAGL 371
Query: 411 LDKHGKLNEKTPQEWARNVVLPPG--GDSVVASL 442
LDK+GK NEKTP W ++ P GD+ + +L
Sbjct: 372 LDKYGKPNEKTPLSWIKSEGYVPKLVGDTAIYTL 405
>gi|154337350|ref|XP_001564908.1| putative centromere/microtubule binding protein cbf5 [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061946|emb|CAM38987.1| putative centromere/microtubule binding protein cbf5 [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 430
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 252/410 (61%), Positives = 324/410 (79%), Gaps = 7/410 (1%)
Query: 59 SIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEV 118
++ +WP+LLKNYD++N+R+ H+T L G+SPL+RPL +YI+YG+IN+DKP+NPSSHEV
Sbjct: 27 TLPAEEWPLLLKNYDKMNIRSTHFTLLECGWSPLRRPLSEYIKYGMINMDKPSNPSSHEV 86
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
V+WIKRIL+ +KTGH+GTLDPKVTG LI+C DRATRLVKSQQ AGK Y+ V RLHD V
Sbjct: 87 VSWIKRILKCDKTGHAGTLDPKVTGALIICTDRATRLVKSQQNAGKTYIGVLRLHDTVSQ 146
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
+V AL+ LTG FQRPPLI+AVKRQLRIR IY ++L+EYD RHL VF CEAGTY
Sbjct: 147 -KRVDAALQRLTGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKHRHLAVFETHCEAGTY 205
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+RT+CVHLGLILG GGHM+ELRR+R+G++ END++ TMHDVMDAQWLY+N +D+ YLRRV
Sbjct: 206 IRTLCVHLGLILGAGGHMEELRRIRTGVITENDHLSTMHDVMDAQWLYENEKDDTYLRRV 265
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
I+P E LL+++KR+VVKD+ VNA+CYGAKLMIPGL RF+N IE + VVLM+TKGEA+AL
Sbjct: 266 ILPCEYLLSNHKRIVVKDSAVNAVCYGAKLMIPGLARFDNGIERDDVVVLMSTKGEAIAL 325
Query: 359 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLN 418
AEMTT+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+ ++ +G LDK+G+
Sbjct: 326 AYAEMTTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPIAVKKRSMMKDGLLDKYGRPQ 385
Query: 419 EKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD 468
TP +W + GG V + A + A + +GVK++++ S D
Sbjct: 386 SNTPSDW---FYVDYGG---VKTNAEGVQYGQAPSKVSGVKRQRVPDSDD 429
>gi|339241467|ref|XP_003376659.1| putative H/ACA ribonucleoprotein complex subunit 4 [Trichinella
spiralis]
gi|316974612|gb|EFV58096.1| putative H/ACA ribonucleoprotein complex subunit 4 [Trichinella
spiralis]
Length = 529
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/469 (58%), Positives = 332/469 (70%), Gaps = 42/469 (8%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
IKP P + TS+WP+LLK+Y+RLN R+ H+TP+ G SPL R + DYI G INLDKP
Sbjct: 45 IKPSEKPPKLKTSEWPLLLKDYERLNSRSNHFTPIVAGSSPLNRNIKDYISAGFINLDKP 104
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
ANPSSHEVV+WIKRILRV KTGHSGTLDPKV+G LIVCIDRATRLVKSQQ AGKEYVCV
Sbjct: 105 ANPSSHEVVSWIKRILRVPKTGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKEYVCVF 164
Query: 171 RLHDKVPDVAKVARAL------------EALTGAVFQRPPLISAVKRQLRIRTIYESKLL 218
+LH V KV E LTGA+FQRPPLISAVKRQLRIRT+YE+KLL
Sbjct: 165 KLHGSVESKRKVVEVYFMLFCFFLLLALERLTGALFQRPPLISAVKRQLRIRTVYENKLL 224
Query: 219 EYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHD 278
EYD +R++ VF + CEAGTYVRT+CVHLG ILGVGG MQELRR+RSG E DNMVTMHD
Sbjct: 225 EYDEERNMGVFIVKCEAGTYVRTLCVHLGYILGVGGVMQELRRIRSGHTSEKDNMVTMHD 284
Query: 279 VMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTT-------------------V 319
VMDAQWLYDN +DE+YLR VI PLE LL KR+VVKD+ V
Sbjct: 285 VMDAQWLYDNCQDESYLRYVISPLEKLLVGMKRIVVKDSAVSEQFTFIVCYRCFRTSDKV 344
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARI 379
NAICYGAK+++PG+L++E+ IE+ ++VV+M+TKGEAV LGIA MT++ +A CDHGVVA+I
Sbjct: 345 NAICYGAKILLPGILKYESGIELNDDVVVMSTKGEAVCLGIALMTSSTIAGCDHGVVAKI 404
Query: 380 KRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVV 439
KRV+M+RD YPR+W LGP A KK++I G LD+ GK NE+TP +W + + P
Sbjct: 405 KRVIMERDVYPRRWCLGPVAMKKKQMIKAGLLDEFGKPNERTPSDWHKIYINP------- 457
Query: 440 ASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKE 488
++ +E AE E KR D D AKK K+E + V+ +
Sbjct: 458 -NVKETSESENAENEK---DKRNDDEEEDDGNQPAKKMKIETLQTVQSD 502
>gi|71420515|ref|XP_811513.1| centromere/microtubule binding protein cbf5 [Trypanosoma cruzi
strain CL Brener]
gi|70876184|gb|EAN89662.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
cruzi]
Length = 428
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 244/375 (65%), Positives = 312/375 (83%), Gaps = 1/375 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
++ Q ++ QWP+LLKNYD++NVR+ ++T L G+SPL+RPL +Y++YG+INLDKP
Sbjct: 19 LEAQDSESTLPPGQWPLLLKNYDQMNVRSSNFTILECGWSPLRRPLKEYLKYGMINLDKP 78
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHEVV+WIKRIL+ +KTGH+GTLDPKVTG LI+CIDRATRLVKSQQ AGK Y+ V
Sbjct: 79 SNPSSHEVVSWIKRILKCDKTGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVL 138
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
RLHD V + KV AL+ LTG FQRPPLI+AVKRQLR+R IY ++L+EYD RHLVVF
Sbjct: 139 RLHDTVSE-KKVLAALQRLTGPCFQRPPLIAAVKRQLRVRNIYSNQLVEYDKHRHLVVFE 197
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
CEAGTY+RT+CVHLGLILGVGGHM+ELRR+R+G++ E+D++ TMHDV+DAQWLY+N +
Sbjct: 198 THCEAGTYIRTLCVHLGLILGVGGHMEELRRIRTGVISEDDHVSTMHDVLDAQWLYENEK 257
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE YLRRVI+P E +LT+Y+R+VVKD+ VNA+CYGAKLMIPGL RF+N IE + +VL+T
Sbjct: 258 DETYLRRVILPCEYILTNYRRVVVKDSAVNAVCYGAKLMIPGLSRFDNGIERDDIIVLIT 317
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEA+AL AEM+T+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+ ++ +G
Sbjct: 318 TKGEAIALAYAEMSTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPVAVKKRSMMKDGL 377
Query: 411 LDKHGKLNEKTPQEW 425
LDK+G+ TP +W
Sbjct: 378 LDKYGRPQGNTPSDW 392
>gi|407837272|gb|EKF99701.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
cruzi]
Length = 428
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 243/367 (66%), Positives = 309/367 (84%), Gaps = 1/367 (0%)
Query: 59 SIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEV 118
++ QWP+LLKNYD++NVR+ ++T L G+SPL+RPL +Y++YG+INLDKP+NPSSHEV
Sbjct: 27 TLPPGQWPLLLKNYDQMNVRSSNFTILECGWSPLRRPLKEYLKYGMINLDKPSNPSSHEV 86
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
V+WIKRIL+ +KTGH+GTLDPKVTG LI+CIDRATRLVKSQQ AGK Y+ V RLHD V +
Sbjct: 87 VSWIKRILKCDKTGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLHDTVSE 146
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
KV AL+ LTG FQRPPLI+AVKRQLR+R IY ++L+EYD RHLVVF CEAGTY
Sbjct: 147 -KKVLAALQRLTGPCFQRPPLIAAVKRQLRVRNIYSNQLVEYDKHRHLVVFETHCEAGTY 205
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+RT+CVHLGLILGVGGHM+ELRR+R+G++ E+D++ TMHDV+DAQWLY+N +DE YLRRV
Sbjct: 206 IRTLCVHLGLILGVGGHMEELRRIRTGVISEDDHVSTMHDVLDAQWLYENEKDETYLRRV 265
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
I+P E +LT+Y+R+VVKD+ VNA+CYGAKLMIPGL RF+N IE + +VL+TTKGEA+AL
Sbjct: 266 ILPCEYILTNYRRVVVKDSAVNAVCYGAKLMIPGLSRFDNGIERDDIIVLITTKGEAIAL 325
Query: 359 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLN 418
AEM+T+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+ ++ +G LDK+G+
Sbjct: 326 AYAEMSTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPVAVKKRSMMKDGLLDKYGRPQ 385
Query: 419 EKTPQEW 425
TP +W
Sbjct: 386 VNTPSDW 392
>gi|71412047|ref|XP_808226.1| centromere/microtubule binding protein cbf5 [Trypanosoma cruzi
strain CL Brener]
gi|70872389|gb|EAN86375.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
cruzi]
Length = 428
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 247/381 (64%), Positives = 315/381 (82%), Gaps = 3/381 (0%)
Query: 47 KDFII--KPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGI 104
+DF I + Q ++ QWP+LLKNYD++NVR+ ++T L G+SPL+RPL +Y++YG+
Sbjct: 13 EDFRISLEAQDSESTLPPGQWPLLLKNYDQMNVRSSNFTILECGWSPLRRPLKEYLKYGM 72
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
INLDKP+NPSSHEVV+WIKRIL+ +KTGH+GTLDPKVTG LI+CIDRATRLVKSQQ AGK
Sbjct: 73 INLDKPSNPSSHEVVSWIKRILKCDKTGHAGTLDPKVTGALIICIDRATRLVKSQQNAGK 132
Query: 165 EYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
Y+ V RLHD V + KV AL+ LTG FQRPPLI+AVKRQLR+R IY ++L+EYD R
Sbjct: 133 TYIGVLRLHDTVSE-KKVLAALQRLTGPCFQRPPLIAAVKRQLRVRNIYSNQLVEYDKHR 191
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
HLVVF CEAGTY+RT+CVHLGLILGVGGHM+ELRR+R+G++ E+D++ TMHDV+DAQW
Sbjct: 192 HLVVFETHCEAGTYIRTLCVHLGLILGVGGHMEELRRIRTGVISEDDHVSTMHDVLDAQW 251
Query: 285 LYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGE 344
LY+N +DE YLRRVI+P E +LT+Y+R+VVKD+ VNA+CYGAKLMIPGL RF+N IE +
Sbjct: 252 LYENEKDETYLRRVILPCEYILTNYRRVVVKDSAVNAVCYGAKLMIPGLSRFDNGIERDD 311
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
+VL+TTKGEA+AL AEM+T+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+
Sbjct: 312 IIVLITTKGEAIALAYAEMSTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPVAVKKRL 371
Query: 405 LIAEGKLDKHGKLNEKTPQEW 425
++ +G LDK+G+ TP +W
Sbjct: 372 MMKDGLLDKYGRPQGNTPSDW 392
>gi|340505835|gb|EGR32121.1| hypothetical protein IMG5_095360 [Ichthyophthirius multifiliis]
Length = 439
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/381 (66%), Positives = 329/381 (86%), Gaps = 5/381 (1%)
Query: 51 IKPQSFTPS-IDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
IKP + T + +D S+WP+LLKNYD++N+R+ HYTPL NG +PL R + ++++YG+INLDK
Sbjct: 45 IKPLTSTKAKLDASEWPLLLKNYDKMNIRSSHYTPLCNGSTPLSRSVEEHLKYGVINLDK 104
Query: 110 PANPSSHEVVAWIK----RILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
P+NPSSHEVVAWIK RI +++KTGHSGTLDPKVTG+LIVC++RATRL K+QQ AGKE
Sbjct: 105 PSNPSSHEVVAWIKKLFDRITKMDKTGHSGTLDPKVTGSLIVCLNRATRLAKAQQSAGKE 164
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH ++ K+ +AL+ LTGAVFQ+PPLISAVKR+LR+RTIYESKL+EY+ ++
Sbjct: 165 YVGIVRLHQEIQSSNKLNKALQQLTGAVFQKPPLISAVKRELRVRTIYESKLIEYNPEKR 224
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTYVRT+CVHLGL+LGVGGHM+ELRRVRSGI+ EN +VTMHDV D+ W
Sbjct: 225 LGIFWMSCEAGTYVRTLCVHLGLLLGVGGHMEELRRVRSGIMDENKYLVTMHDVKDSIWR 284
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
Y+NY+D++YLR+V++P EVLLT++ R+VVKD+TVN+ICYGAKLM+PG+LR++N IE+G+E
Sbjct: 285 YENYKDDSYLRKVVIPQEVLLTNFPRIVVKDSTVNSICYGAKLMLPGVLRYDNGIELGKE 344
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+VL+TTKGEAVA+ IA+M T+ +ATCDHGVVA+ KRVVMDRD YP++WGLGPR+ KK L
Sbjct: 345 IVLITTKGEAVAVAIAQMQTSELATCDHGVVAKTKRVVMDRDLYPKRWGLGPRSLRKKNL 404
Query: 406 IAEGKLDKHGKLNEKTPQEWA 426
I EG LDKHGK NEKTP +W
Sbjct: 405 IKEGMLDKHGKPNEKTPNDWT 425
>gi|407406560|gb|EKF30839.1| centromere/microtubule binding protein cbf5, putative [Trypanosoma
cruzi marinkellei]
Length = 428
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 243/372 (65%), Positives = 309/372 (83%), Gaps = 1/372 (0%)
Query: 54 QSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANP 113
Q ++ QWP+LLKNYD++NVR+ ++T L G+SPL+RPL +Y++YG+INLDKP+NP
Sbjct: 22 QGSESTLPPGQWPLLLKNYDQMNVRSSNFTILECGWSPLRRPLKEYLKYGMINLDKPSNP 81
Query: 114 SSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH 173
SSHEVV+WIKRIL+ +KTGH+GTLDPKVTG LI+CIDRATRLVKSQQ AGK Y+ V RLH
Sbjct: 82 SSHEVVSWIKRILKCDKTGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYIGVLRLH 141
Query: 174 DKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISC 233
D + +V AL+ LTG FQRPPLI+AVKRQLR+R IY ++L+EYD RHLVVF C
Sbjct: 142 DTASE-KRVLAALQRLTGPCFQRPPLIAAVKRQLRVRNIYSNQLVEYDKHRHLVVFETHC 200
Query: 234 EAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEA 293
EAGTY+RT+CVHLGLILGVGGHM+ELRR+R+G++ E+D++ TMHDV+DAQWLY+N +DE
Sbjct: 201 EAGTYIRTLCVHLGLILGVGGHMEELRRIRTGVITEDDHVSTMHDVLDAQWLYENEKDET 260
Query: 294 YLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKG 353
YLRRVI+P E +LT+YKR+VVKD+ VNA+CYGAKLMIPGL RF+N IE + +VL+TTKG
Sbjct: 261 YLRRVILPCEYILTNYKRVVVKDSAVNAVCYGAKLMIPGLSRFDNGIERDDIIVLITTKG 320
Query: 354 EAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDK 413
EA+AL AEM+T+ MA+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+ ++ +G LDK
Sbjct: 321 EAIALAYAEMSTSQMASVDHGIVARSKRVIMDRDTYPRRWGLGPVAVKKRSMMKDGLLDK 380
Query: 414 HGKLNEKTPQEW 425
+G+ TP +W
Sbjct: 381 YGRPQGNTPSDW 392
>gi|340056620|emb|CCC50954.1| putative centromere/microtubule binding protein cbf5 [Trypanosoma
vivax Y486]
Length = 428
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 242/356 (67%), Positives = 301/356 (84%), Gaps = 1/356 (0%)
Query: 70 KNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVE 129
KNY +LNVR+ H+T + +G+SPL+RPL +Y++YG+INLDKP+NPSSHEVV+WIKRIL+ E
Sbjct: 38 KNYHKLNVRSSHFTVMESGWSPLRRPLAEYVKYGMINLDKPSNPSSHEVVSWIKRILKCE 97
Query: 130 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEAL 189
KTGH+GTLDPKVTG LI+CIDRATRLVKSQQ AGK YV V RLHD V VA AL+ L
Sbjct: 98 KTGHAGTLDPKVTGALIICIDRATRLVKSQQNAGKTYVGVLRLHDTVSQKNVVA-ALQRL 156
Query: 190 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
TG FQRPPLI+AVKRQLRIR IY ++L+EYD RHL VF CEAGTY+RT+CVHLGLI
Sbjct: 157 TGPCFQRPPLIAAVKRQLRIRNIYSNQLIEYDKHRHLAVFETHCEAGTYIRTLCVHLGLI 216
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LGVGGHM+ELRR+R+G++ E+D++ TMHDV+DAQWLY+N +D++YLRRVI+P E LLT+Y
Sbjct: 217 LGVGGHMEELRRIRTGVISEDDHISTMHDVLDAQWLYENEKDDSYLRRVILPCEYLLTNY 276
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
KR+VVKD+ VNA+CYGAKLMIPGL RF++ IE + +VLMTTKGEA+ALG AEM+T+ MA
Sbjct: 277 KRIVVKDSAVNAVCYGAKLMIPGLARFDSGIERDDVIVLMTTKGEAIALGYAEMSTSQMA 336
Query: 370 TCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEW 425
+ DHG+VAR KRV+MDRDTYPR+WGLGP A K+ ++ +G LDK+G+ TP +W
Sbjct: 337 SVDHGIVARSKRVIMDRDTYPRRWGLGPVAVKKRSMMKDGLLDKYGRPQANTPSDW 392
>gi|226478554|emb|CAX72772.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
gi|257205750|emb|CAX82526.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
Length = 459
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/384 (66%), Positives = 311/384 (80%), Gaps = 1/384 (0%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DAD A A+ F + P+ P++D SQWP+LLKN +NVR H+ G+SPL RP
Sbjct: 12 DADVGAIQA-AEPFAVIPEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGFSPLHRP 70
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
L +YI+ G+INLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRL
Sbjct: 71 LDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRL 130
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYVC+ RLHD V DV K+ +A+E LTGA+FQRPPL++AVKRQLR+RTIYES
Sbjct: 131 VKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLTGALFQRPPLVAAVKRQLRVRTIYES 190
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLLEYD R+L + + CEAGTYVRT+CVHLGL+LG GG M+ELRR R+G + E DN+VT
Sbjct: 191 KLLEYDKSRNLGLITVRCEAGTYVRTLCVHLGLLLGCGGVMEELRRSRTGFMSERDNLVT 250
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHD++DA+WLYDN RDE YLRRV+MPLE LL +KR+++KDT V AIC+GAKLM+PG+LR
Sbjct: 251 MHDILDAKWLYDNRRDETYLRRVVMPLERLLVKHKRIMLKDTAVCAICFGAKLMLPGVLR 310
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
++NDI V +E+VLMTTKGEAVAL IA MTTA +ATCDHG+VA++KRV+M+RD YPR+WG
Sbjct: 311 YDNDINVNDEIVLMTTKGEAVALAIALMTTATIATCDHGLVAKLKRVIMERDLYPRQWGR 370
Query: 396 GPRASMKKKLIAEGKLDKHGKLNE 419
GP A +KKL+A+G L K K E
Sbjct: 371 GPVAMERKKLVAQGLLKKFAKSGE 394
>gi|399215940|emb|CCF72628.1| unnamed protein product [Babesia microti strain RI]
Length = 412
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/374 (66%), Positives = 295/374 (78%), Gaps = 8/374 (2%)
Query: 68 LLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEV-------VA 120
L++NY RL+VRTGHYTPLP G SPL RPL +YI+YG IN+DKP+NPSSHEV VA
Sbjct: 11 LMQNYGRLHVRTGHYTPLPYGSSPLNRPLTEYIKYGFINVDKPSNPSSHEVTRRITQVVA 70
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIKRIL+ EKTGHSGTLDPKVTG L+VC++RATRL GKEYV V R H KV
Sbjct: 71 WIKRILKCEKTGHSGTLDPKVTGVLLVCLNRATRLASHNFILGKEYVGVVRFHGKVESKN 130
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
+ +ALE LTGA FQRPPLI AVKRQLRIRTIYE+KLL+YD +R L FWI CEAGTYVR
Sbjct: 131 AIEKALETLTGACFQRPPLICAVKRQLRIRTIYETKLLDYDQERDLAAFWIKCEAGTYVR 190
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
T CVHLGL++GVG HMQELRR++SG L E+DNMVT+H+++DA ++Y DE YLR +I
Sbjct: 191 TFCVHLGLLIGVGAHMQELRRIKSGHLSEDDNMVTLHEILDANYIYQKTNDETYLRAIIS 250
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLE LLT RLVVKD+ VNA+CYGAKLMIPGLLRFE+ IE+ VV+MTTKGEA+ALG+
Sbjct: 251 PLEGLLTKLPRLVVKDSCVNAVCYGAKLMIPGLLRFEDGIELNSTVVMMTTKGEAIALGV 310
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
A+M TAV+ + DHGVVA +KRV+MDRDTYP +WG GPRA+ KKK+I G LD HG+ N +
Sbjct: 311 AQMPTAVICSVDHGVVALVKRVIMDRDTYPTRWGHGPRATEKKKMILAGLLDSHGRPNAQ 370
Query: 421 TPQEWARN-VVLPP 433
TP +W R+ LPP
Sbjct: 371 TPHQWLRSEGFLPP 384
>gi|226478530|emb|CAX72760.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
Length = 459
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/384 (66%), Positives = 311/384 (80%), Gaps = 1/384 (0%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DAD A A+ F + P+ P++D SQWP+LLKN +NVR H+ G+SPL RP
Sbjct: 12 DADVGAIQA-AEPFAVIPEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGFSPLHRP 70
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
L +YI+ G+INLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRL
Sbjct: 71 LDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRL 130
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYVC+ RLHD V DV K+ +A+E LTGA+FQRPPL++AVKRQLR+RTIYES
Sbjct: 131 VKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLTGALFQRPPLVAAVKRQLRVRTIYES 190
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLLEYD R+L + + CEAGTYVRT+CVHLGL+LG GG M+ELRR R+G + E DN+VT
Sbjct: 191 KLLEYDKSRNLGLITVRCEAGTYVRTLCVHLGLLLGCGGVMEELRRSRTGFMSERDNLVT 250
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHD++DA+WLYDN RDE YLRRV+MPLE LL +KR+++KDT V AIC+GAKLM+PG+LR
Sbjct: 251 MHDILDAKWLYDNRRDETYLRRVVMPLERLLVKHKRIMLKDTAVCAICFGAKLMLPGVLR 310
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
++NDI V +E+VLMTTKGEAVAL IA MTTA +ATCDHG+VA++KRV+M+RD YPR+WG
Sbjct: 311 YDNDINVNDEIVLMTTKGEAVALAIALMTTATIATCDHGLVAKLKRVIMERDLYPRQWGR 370
Query: 396 GPRASMKKKLIAEGKLDKHGKLNE 419
GP A +KKL+A+G L K K E
Sbjct: 371 GPVAMERKKLVAQGLLKKFAKSGE 394
>gi|56759202|gb|AAW27741.1| SJCHGC01561 protein [Schistosoma japonicum]
Length = 459
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/384 (66%), Positives = 311/384 (80%), Gaps = 1/384 (0%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DAD A A+ F + P+ P++D SQWP+LLKN +NVR H+ G+SPL RP
Sbjct: 12 DADVGAIQA-AEPFAVIPEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGFSPLHRP 70
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
L +YI+ G+INLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRL
Sbjct: 71 LDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRL 130
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYVC+ RLHD V DV K+ +A+E LTGA+FQRPPL++AVKRQLR+RTIYES
Sbjct: 131 VKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLTGALFQRPPLVAAVKRQLRVRTIYES 190
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLLEYD R+L + + CEAGTYVRT+CVHLGL+LG GG M+ELRR R+G + E DN+VT
Sbjct: 191 KLLEYDKSRNLGLITVRCEAGTYVRTLCVHLGLLLGCGGVMEELRRSRTGFMSERDNLVT 250
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHD++DA+WLYDN RDE YLRRV+MPLE LL +KR+++KDT V AIC+GAKLM+PG+LR
Sbjct: 251 MHDILDAKWLYDNRRDETYLRRVVMPLERLLVKHKRIMLKDTAVCAICFGAKLMLPGVLR 310
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
++NDI V +E+VLMTTKGEAVAL IA MTTA +ATCDHG+VA++KRV+M+RD YPR+WG
Sbjct: 311 YDNDINVNDEIVLMTTKGEAVALAIALMTTATIATCDHGLVAKLKRVIMERDLYPRQWGR 370
Query: 396 GPRASMKKKLIAEGKLDKHGKLNE 419
GP A +KKL+A+G L K K E
Sbjct: 371 GPVAMERKKLVAQGLLKKFAKSGE 394
>gi|226478088|emb|CAX72737.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
Length = 459
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/384 (66%), Positives = 310/384 (80%), Gaps = 1/384 (0%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DAD A A+ F + P+ P++D SQWP+LLKN +NVR H+ G+SPL RP
Sbjct: 12 DADVGAIQA-AEPFAVIPEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGFSPLHRP 70
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
L +YI+ G+INLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRL
Sbjct: 71 LDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRL 130
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYVC+ RLHD V DV K+ +A+E LTGA+FQRPPL++AVKRQLR+RTIYES
Sbjct: 131 VKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLTGALFQRPPLVAAVKRQLRVRTIYES 190
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLLEYD R+L + + CEAGTYVRT+CVHLGL+LG GG M+ELRR R+G + E DN+VT
Sbjct: 191 KLLEYDKSRNLGLITVRCEAGTYVRTLCVHLGLLLGCGGVMEELRRSRTGFMSERDNLVT 250
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHD++DA+WLYDN RDE YLRRV+MPLE LL +KR+++KDT V AIC+GAKLM+PG+LR
Sbjct: 251 MHDILDAKWLYDNRRDETYLRRVVMPLERLLVKHKRIMLKDTAVCAICFGAKLMLPGVLR 310
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
++NDI V +E+VLMTTKGEAVAL IA MTTA +ATCDHG+VA++KRV+M+ D YPR+WG
Sbjct: 311 YDNDINVNDEIVLMTTKGEAVALAIALMTTATIATCDHGLVAKLKRVIMEHDLYPRQWGR 370
Query: 396 GPRASMKKKLIAEGKLDKHGKLNE 419
GP A +KKL+A+G L K K E
Sbjct: 371 GPVAMERKKLVAQGLLKKFAKSGE 394
>gi|115438500|ref|XP_001218082.1| centromere/microtubule-binding protein cbf5 [Aspergillus terreus
NIH2624]
gi|114188897|gb|EAU30597.1| centromere/microtubule-binding protein cbf5 [Aspergillus terreus
NIH2624]
Length = 464
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/434 (62%), Positives = 315/434 (72%), Gaps = 36/434 (8%)
Query: 27 AAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLP 86
A+A+T DT D + IKP++ T SI TS+WP+LLKNYD+L VRTGH+TP+P
Sbjct: 2 ASAVTKDTMD------------YTIKPEAGTSSISTSEWPLLLKNYDKLLVRTGHFTPIP 49
Query: 87 NGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 146
G SPLKR L YI G+INLDKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LI
Sbjct: 50 AGCSPLKRDLKSYINSGVINLDKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLI 109
Query: 147 VCIDRATRLVKSQQGAGKEYVCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKR 205
VCIDRATRLVKSQQGAGKEYVCV RLHDK+P A+ RALE LTGA+FQRPPLISAVKR
Sbjct: 110 VCIDRATRLVKSQQGAGKEYVCVIRLHDKIPGGEAQFRRALETLTGALFQRPPLISAVKR 169
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGH-MQELRRVRS 264
QLRIRTI + L F LG + G + ELRRVRS
Sbjct: 170 QLRIRTIPREQALRVRQRETPRCF----------------LGELRGRHVYPYSELRRVRS 213
Query: 265 GILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
G + EN MVT+HDVMDAQW+YDN RDE+YLRRVI PLE LLT YKR+VVKD+ VNA+CY
Sbjct: 214 GAMDENSGMVTLHDVMDAQWMYDNQRDESYLRRVIRPLETLLTGYKRIVVKDSAVNAVCY 273
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
GAKLMIPGLLRFE I+V EEVVLMTTKGEA+A+GIA+M+T + TCDHGVVA++KR +M
Sbjct: 274 GAKLMIPGLLRFEAGIDVNEEVVLMTTKGEAIAIGIAQMSTVELTTCDHGVVAKVKRCIM 333
Query: 385 DRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEW---ARNVVLPPGGDSVVAS 441
+RD YPR+WGLGP A KKKL + GKLDK+G NE TP +W ++ LP G A
Sbjct: 334 ERDLYPRRWGLGPVALEKKKLKSAGKLDKYGHANEATPAKWKSDYKDYSLPEDGS---AQ 390
Query: 442 LAAAAEQTVAEKET 455
A A ++ E ET
Sbjct: 391 PAEAPKEEAPETET 404
>gi|257206120|emb|CAX82711.1| dyskeratosis congenita 1, dyskerin [Schistosoma japonicum]
Length = 459
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/384 (65%), Positives = 309/384 (80%), Gaps = 1/384 (0%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DAD A A+ F + P+ P++D SQWP+LLKN +NVR H+ G+SPL RP
Sbjct: 12 DADVGAIQA-AEPFAVIPEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGFSPLHRP 70
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
L +YI+ G+INLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRL
Sbjct: 71 LDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRL 130
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYVC+ RLHD V DV K+ +A+E LTGA+FQRPPL++AVKRQL +RTIYES
Sbjct: 131 VKSQQSAGKEYVCIFRLHDSVDDVKKIQKAVEGLTGALFQRPPLVAAVKRQLTVRTIYES 190
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLLEYD R+L + + CEAGTYVRT+CVHLGL+LG GG M+EL+R R+ + E DN+VT
Sbjct: 191 KLLEYDKSRNLGLITVRCEAGTYVRTLCVHLGLLLGCGGVMEELQRSRTVFMSEKDNLVT 250
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHD++DA+WLYDN RDE YLRRV+MPLE LL +KR+++KDT V AIC+GAKLM+PG+LR
Sbjct: 251 MHDILDAKWLYDNRRDETYLRRVVMPLERLLVKHKRIMLKDTAVCAICFGAKLMLPGVLR 310
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
++NDI V +E+VLMTTKGEAVAL IA MTTA +ATCDHG+VA++KRV+M+RD YPR+WG
Sbjct: 311 YDNDINVNDEIVLMTTKGEAVALAIALMTTATIATCDHGLVAKLKRVIMERDLYPRQWGR 370
Query: 396 GPRASMKKKLIAEGKLDKHGKLNE 419
GP A +KKL+A+G L K K E
Sbjct: 371 GPVAMERKKLVAQGLLKKFAKSGE 394
>gi|390480418|ref|XP_002763476.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Callithrix
jacchus]
Length = 506
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/423 (61%), Positives = 327/423 (77%), Gaps = 10/423 (2%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G IN
Sbjct: 34 EEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFIN 93
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEY
Sbjct: 94 LDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEY 153
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L
Sbjct: 154 VGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRL 213
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
+FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWLY
Sbjct: 214 GIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLY 273
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN++DE+YLRRV+ PLE LLTS+KRLV+KD+ V++ G L + L +D ++
Sbjct: 274 DNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVSS-SLGVPLAVE--LGLIDDQFFPLQI 330
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
+L + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +I
Sbjct: 331 ILF------FSAAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMI 384
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
+G LDKHGK + TP W + V VA+ A Q VA +KR+ ++
Sbjct: 385 KQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVAAEVVKAPQVVAGAAKTAKRKRESES 444
Query: 466 SGD 468
D
Sbjct: 445 ESD 447
>gi|328789977|ref|XP_397244.4| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Apis
mellifera]
Length = 495
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 230/344 (66%), Positives = 289/344 (84%)
Query: 65 WPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
WP+L KN+D++ RT H+TPL +G +PL R L +YI+ G INLDKP NPSSHEVVAWIKR
Sbjct: 41 WPLLFKNFDKMLTRTKHFTPLTSGSTPLHRTLSEYIKSGCINLDKPCNPSSHEVVAWIKR 100
Query: 125 ILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVAR 184
IL+VEKTGHSGTLDPK +G LIVCIDRATRL KSQQ AGKEY+ V +LH + KV++
Sbjct: 101 ILKVEKTGHSGTLDPKGSGCLIVCIDRATRLAKSQQSAGKEYIAVFKLHSAPESLQKVSQ 160
Query: 185 ALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
ALE L GA+FQRPPLISAVKRQLR+RT+Y+S L+YD +R++ VF +SCEAG+Y+RT+CV
Sbjct: 161 ALEKLRGALFQRPPLISAVKRQLRVRTVYDSWFLDYDEERNMGVFRVSCEAGSYIRTICV 220
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
HLGL LG G MQELRR RSG+ END MVTMHD++DAQWLY+N+ DE+YLRRVI PLE
Sbjct: 221 HLGLFLGTGCQMQELRRNRSGVQSENDGMVTMHDILDAQWLYENHGDESYLRRVIKPLEA 280
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
LL ++KR++VKD+ VNAICYGAK+M+PG+L +++ IE+ +E+V++TTKGEA+AL IA MT
Sbjct: 281 LLINHKRIIVKDSAVNAICYGAKIMLPGILMYDDGIELNQEIVIVTTKGEAIALAIALMT 340
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
+ M TCDHGV A+IKRV+M+RD YPRKWGLGP+AS+KK++I E
Sbjct: 341 SPTMTTCDHGVAAKIKRVIMERDAYPRKWGLGPKASIKKRMIIE 384
>gi|296817373|ref|XP_002849023.1| centromere/microtubule-binding protein cbf5 [Arthroderma otae CBS
113480]
gi|238839476|gb|EEQ29138.1| centromere/microtubule-binding protein cbf5 [Arthroderma otae CBS
113480]
Length = 448
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/379 (65%), Positives = 291/379 (76%), Gaps = 46/379 (12%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF IKP++ P I TS+WP+LLKNYD+ Y YG+
Sbjct: 13 DFSIKPEAVAPPIPTSEWPLLLKNYDKRM----------------------YPTYGL--- 47
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
VEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 48 --------------------VEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 87
Query: 168 CVARLHDKVPD-VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE L+GA+FQRPPLISAVKRQLRIRTIYESKL E+D DRHL
Sbjct: 88 CVIRLHDKIPGGQAQFARALETLSGALFQRPPLISAVKRQLRIRTIYESKLYEFDNDRHL 147
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+
Sbjct: 148 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMM 207
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN+RDE+YLR+VI PLE LLTSYKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEV EEV
Sbjct: 208 DNHRDESYLRKVIRPLESLLTSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVYEEV 267
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WG+GP A KKKL
Sbjct: 268 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGMGPVALEKKKLK 327
Query: 407 AEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ N TP +W
Sbjct: 328 ADGKLDKYGRTNASTPAKW 346
>gi|82595579|ref|XP_725907.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481090|gb|EAA17472.1| unknown protein-related [Plasmodium yoelii yoelii]
Length = 4236
Score = 520 bits (1339), Expect = e-144, Method: Composition-based stats.
Identities = 247/381 (64%), Positives = 308/381 (80%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
++ I+P+ +ID S WP+LLKNYD+LN+R+ H+TPLP G SP R L +Y++YGIINL
Sbjct: 3783 EYKIEPEKKEATIDASNWPLLLKNYDKLNIRSSHFTPLPMGNSPYSRNLKEYLKYGIINL 3842
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKEYV
Sbjct: 3843 DKPSNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKEYV 3902
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV + H K + +V L GA+FQRPPLI AVKRQLR+RTIYESKLL+YD +L
Sbjct: 3903 CVCKFHSKPKSIEEVKLVLNNFQGAIFQRPPLICAVKRQLRVRTIYESKLLDYDDTNNLC 3962
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW+ C+AGTY+RT+C H+GL+LGVG HMQELRRV+SG + E DNM T+HD+MDAQ++YD
Sbjct: 3963 VFWVRCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDIMDAQYIYD 4022
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
DE YLR++I PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I+V E+V
Sbjct: 4023 TTGDETYLRKIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVYSEIV 4082
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
LMTTKGEAVAL IA+MT+ V+AT DHG+VA KRV+MDRDTY KWG G R+ KKKLI
Sbjct: 4083 LMTTKGEAVALAIAQMTSTVIATVDHGIVALTKRVIMDRDTYDVKWGFGNRSMEKKKLIL 4142
Query: 408 EGKLDKHGKLNEKTPQEWARN 428
G LDK+GK NEKTP W ++
Sbjct: 4143 AGLLDKYGKPNEKTPISWIKS 4163
>gi|312373002|gb|EFR20835.1| hypothetical protein AND_19384 [Anopheles darlingi]
Length = 500
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/423 (61%), Positives = 313/423 (73%), Gaps = 37/423 (8%)
Query: 3 EVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDT 62
EV++ S KK KKK + + DF IKP +DT
Sbjct: 2 EVDIPTSPIKKEKKKKKVKQEPEENLGEIQKSG------------DFQIKPSEAIARLDT 49
Query: 63 SQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWI 122
S+WP+LLKN+DRLNVR+ HYTPLP G SPL R + DY+ G INLDKP+NPSSHEVVAWI
Sbjct: 50 SKWPLLLKNFDRLNVRSNHYTPLPFGASPLNRKIKDYVTAGFINLDKPSNPSSHEVVAWI 109
Query: 123 KRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKV 182
KRIL+V+KTGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGKEYV V +LH V VAKV
Sbjct: 110 KRILKVDKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAVFKLHSGVEKVAKV 169
Query: 183 ARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTM 242
+ LE L GA+FQRPPLI+AVKRQLR+RT+Y+SKLL+YD R++ VFW
Sbjct: 170 TQGLEKLRGALFQRPPLIAAVKRQLRVRTVYDSKLLDYDDVRNMGVFW------------ 217
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
M ELRRVRSGI E D MVTMHDV+DAQ+LY+N++DE+ LRRVI PL
Sbjct: 218 -------------MLELRRVRSGIQSEKDGMVTMHDVLDAQYLYENHKDESMLRRVIKPL 264
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362
E LL +K +++KD++VNA+CYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEAVAL IA
Sbjct: 265 EGLLVGHKCIIMKDSSVNAVCYGAKIMLPGVLRYEDGIELDQEIVIVTTKGEAVALAIAL 324
Query: 363 MTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTP 422
MTTA MA CDHGVVA+IKRV+M+RDTYPRKWGLGP+ASMKK+LIA GKLDK GK NE TP
Sbjct: 325 MTTATMAGCDHGVVAKIKRVIMERDTYPRKWGLGPKASMKKQLIASGKLDKFGKPNENTP 384
Query: 423 QEW 425
+EW
Sbjct: 385 KEW 387
>gi|256083755|ref|XP_002578104.1| centromere/microtubule binding protein cbf5 [Schistosoma mansoni]
Length = 414
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/371 (65%), Positives = 304/371 (81%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+ F + + P++D SQWP+LLKN +NVR H+ GYSPL RPL +YI+ G+I
Sbjct: 17 AESFAVISEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGYSPLHRPLDEYIKSGVI 76
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRLVKSQQ AGKE
Sbjct: 77 NLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKE 136
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLH+ V ++ K+ +A+E LTGA+FQRPPL++AVKRQLR+RTIYE KLLEY+ ++
Sbjct: 137 YVCIFRLHESVDEIKKIQKAVEGLTGALFQRPPLVAAVKRQLRVRTIYECKLLEYEKSKN 196
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L + + CEAGTYVRT+CVHLGL+LG GG M+ELRR ++G + E DN+VTMHD++DA+WL
Sbjct: 197 LGLIMVRCEAGTYVRTLCVHLGLLLGCGGVMEELRRSKTGFMSERDNLVTMHDILDAKWL 256
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE YLRRVIMPLE LL +KR+++KDT V AIC+GAKLM+PG+LR++NDI V +E
Sbjct: 257 YDNRRDETYLRRVIMPLEKLLIKHKRIMLKDTAVCAICFGAKLMLPGVLRYDNDINVNDE 316
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+VLMTTKGEAVAL +A MTTA +ATCDHG+VA++KRV+M+RD YPR+WG GP + +KKL
Sbjct: 317 IVLMTTKGEAVALAVALMTTATIATCDHGLVAKLKRVIMERDLYPRQWGRGPVSMERKKL 376
Query: 406 IAEGKLDKHGK 416
+A+G L K K
Sbjct: 377 VAQGLLKKFSK 387
>gi|256083757|ref|XP_002578105.1| centromere/microtubule binding protein cbf5 [Schistosoma mansoni]
Length = 399
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/371 (65%), Positives = 304/371 (81%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+ F + + P++D SQWP+LLKN +NVR H+ GYSPL RPL +YI+ G+I
Sbjct: 17 AESFAVISEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGYSPLHRPLDEYIKSGVI 76
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRLVKSQQ AGKE
Sbjct: 77 NLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKE 136
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLH+ V ++ K+ +A+E LTGA+FQRPPL++AVKRQLR+RTIYE KLLEY+ ++
Sbjct: 137 YVCIFRLHESVDEIKKIQKAVEGLTGALFQRPPLVAAVKRQLRVRTIYECKLLEYEKSKN 196
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L + + CEAGTYVRT+CVHLGL+LG GG M+ELRR ++G + E DN+VTMHD++DA+WL
Sbjct: 197 LGLIMVRCEAGTYVRTLCVHLGLLLGCGGVMEELRRSKTGFMSERDNLVTMHDILDAKWL 256
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN RDE YLRRVIMPLE LL +KR+++KDT V AIC+GAKLM+PG+LR++NDI V +E
Sbjct: 257 YDNRRDETYLRRVIMPLEKLLIKHKRIMLKDTAVCAICFGAKLMLPGVLRYDNDINVNDE 316
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+VLMTTKGEAVAL +A MTTA +ATCDHG+VA++KRV+M+RD YPR+WG GP + +KKL
Sbjct: 317 IVLMTTKGEAVALAVALMTTATIATCDHGLVAKLKRVIMERDLYPRQWGRGPVSMERKKL 376
Query: 406 IAEGKLDKHGK 416
+A+G L K K
Sbjct: 377 VAQGLLKKFSK 387
>gi|358333510|dbj|GAA34033.2| H/ACA ribonucleoprotein complex subunit 4, partial [Clonorchis
sinensis]
Length = 375
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 234/349 (67%), Positives = 293/349 (83%)
Query: 71 NYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEK 130
N +NVR H+ GYSPL RP+ ++I+ G+INLDKP+NPSSHEVVAW+KR L V K
Sbjct: 1 NVHLMNVRECHFEADTTGYSPLHRPIEEHIQTGVINLDKPSNPSSHEVVAWVKRALCVGK 60
Query: 131 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALT 190
TGHSGTLDPKVTG LIVCIDRATRLVKSQQ AGK YV + RLH+ + D +V +A+E L+
Sbjct: 61 TGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKVYVGIFRLHEALDDYKRVHQAVETLS 120
Query: 191 GAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
GA+FQRPPL++AVKRQLR+RT+YE+KLLEYD ++ L V ++CEAGTYVRT+CVH+GL+L
Sbjct: 121 GALFQRPPLVAAVKRQLRVRTVYENKLLEYDKEKGLGVIRVTCEAGTYVRTLCVHIGLLL 180
Query: 251 GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
G GG M+ELRR+RSGIL E DNMVTMHD++DA+WLYDN RDE+YLRRVIMPLE LL +K
Sbjct: 181 GCGGVMEELRRIRSGILTEEDNMVTMHDILDAKWLYDNRRDESYLRRVIMPLEKLLIGHK 240
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMAT 370
R+++KDT V+AICYGAKLM+PG+LR++NDI V +E+VLMTTKGEA+A+ IA MTTA +AT
Sbjct: 241 RIMLKDTAVSAICYGAKLMLPGVLRYDNDITVNDEIVLMTTKGEAIAIAIALMTTATIAT 300
Query: 371 CDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNE 419
CDHG+VA++KRV+M+RD YPR+WG GP A +KKL+A+G L K+ K E
Sbjct: 301 CDHGLVAKLKRVIMERDLYPRQWGRGPVAMERKKLVAQGLLSKYAKPGE 349
>gi|255619323|ref|XP_002540014.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
gi|223500118|gb|EEF22369.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
Length = 264
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 232/248 (93%), Positives = 241/248 (97%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKPQSFTP DTS+WPILLKNYDRLNVRTGHYTPLP+G+SPLKRPL +YIRYG++NLDK
Sbjct: 17 MIKPQSFTPPNDTSKWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEYIRYGVMNLDK 76
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV
Sbjct: 77 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 136
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
ARLHDKVPDVAKVARALE LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVF
Sbjct: 137 ARLHDKVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVF 196
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE DNMVTMHDVMDAQW++DNY
Sbjct: 197 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVFDNY 256
Query: 290 RDEAYLRR 297
RDE YLRR
Sbjct: 257 RDETYLRR 264
>gi|290986444|ref|XP_002675934.1| predicted protein [Naegleria gruberi]
gi|284089533|gb|EFC43190.1| predicted protein [Naegleria gruberi]
Length = 490
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/369 (63%), Positives = 300/369 (81%), Gaps = 1/369 (0%)
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
D+S++P+LLKN+D+LN RTGHYTP+P G +P KR L +Y++YG+INLDKPANPSSHE+VA
Sbjct: 30 DSSEFPLLLKNFDKLNARTGHYTPIPAGNTPTKRKLEEYLKYGVINLDKPANPSSHEIVA 89
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
W+K+IL VEKTGHSGTLDPKVTG LIVC++RATRLVKSQQGAGK+YV + +L+ +V
Sbjct: 90 WVKKILDVEKTGHSGTLDPKVTGCLIVCLNRATRLVKSQQGAGKQYVSILKLNGEVQGGY 149
Query: 181 K-VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
K V AL LTGAVFQ PP ISAVKRQLRIR+IY+ KL E+D + VFW+ C+AGTYV
Sbjct: 150 KAVEEALTTLTGAVFQMPPEISAVKRQLRIRSIYDVKLFEFDAKSQMAVFWVKCQAGTYV 209
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
RT+C HLGL+LG GG M ELRRV+SG L E D + TMHDV+DAQ DE+YLRR++
Sbjct: 210 RTLCEHLGLLLGTGGSMFELRRVQSGSLSEKDFLYTMHDVLDAQHELKAKGDESYLRRIV 269
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PLE+LLT+YKR++VKD+ VN+IC+GA+LMIPG+LR+++ IE GEE+VL+TTKGEA+A
Sbjct: 270 KPLEILLTNYKRVIVKDSAVNSICFGAQLMIPGVLRYDDSIETGEEIVLITTKGEAIATA 329
Query: 360 IAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNE 419
A MT+ + + D+GVV + KRV+MDR+TYPR+WG+GP + +KK+LI +GKLDK+G+ E
Sbjct: 330 YAVMTSIQIQSMDYGVVCKTKRVIMDRNTYPRRWGMGPVSKLKKELIEQGKLDKYGQPTE 389
Query: 420 KTPQEWARN 428
TP+ W N
Sbjct: 390 STPEVWLNN 398
>gi|414876856|tpg|DAA53987.1| TPA: hypothetical protein ZEAMMB73_001838 [Zea mays]
Length = 308
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 223/261 (85%), Positives = 244/261 (93%), Gaps = 1/261 (0%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
++IKPQS PS+DTS WP+LLKNYDRLNVRTGHYTPLP+G+SPLKRPL +++RYG+INLD
Sbjct: 47 YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEHLRYGVINLD 106
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC
Sbjct: 107 KPSNPSSHEVVAWIKRILRAEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 166
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
VAR H VPD A+VARALEALTGAVFQRPPLISAVKRQLR+RTIYESKLLE+D +RHL V
Sbjct: 167 VARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHDPERHLAV 226
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FWISCEAGTYVRT+CVHLGL+LGVG HMQELRRVRSGILGE DNMVTMHDVMDA W DN
Sbjct: 227 FWISCEAGTYVRTLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTMHDVMDAMWSLDN 286
Query: 289 YRDEAYLRRVIMPLEVLLTSY 309
Y+DE+YLRRV+MPLEV +TSY
Sbjct: 287 YKDESYLRRVVMPLEV-VTSY 306
>gi|241998150|ref|XP_002433718.1| pseudouridine synthase, putative [Ixodes scapularis]
gi|215495477|gb|EEC05118.1| pseudouridine synthase, putative [Ixodes scapularis]
Length = 407
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/380 (62%), Positives = 292/380 (76%), Gaps = 6/380 (1%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+I+P S++TSQWP+LLKN+D+LNVRT HY P+P+G SPLKR L +YIR G INL
Sbjct: 28 DFVIQPSEKAGSLNTSQWPLLLKNFDKLNVRTNHYVPMPHGSSPLKRELREYIRSGFINL 87
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP NPSSHEVVAW+KRIL+VEKTGHSGTLDPKV+G LIVCI+R+TRLVKSQQ AGKEYV
Sbjct: 88 DKPCNPSSHEVVAWVKRILKVEKTGHSGTLDPKVSGCLIVCIERSTRLVKSQQSAGKEYV 147
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ +LH+ +V +A E L GA+FQRPPLISAVKRQLRIRTIYESKLLE++ ++
Sbjct: 148 AIFKLHEDPKSEREVLQACEKLKGALFQRPPLISAVKRQLRIRTIYESKLLEFNKTNNMG 207
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
V W+SCEAGTYVRT+CVHLGL+LG GG MQELRRVRSGI E V DA W
Sbjct: 208 VLWVSCEAGTYVRTLCVHLGLVLGTGGVMQELRRVRSGIQDEKVTSSGAEGVWDAPWTPR 267
Query: 288 NYRDEAYLRRVIMPLEVLLTS----YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
E Y I PL + K L VNA+CYGAK+M+PG+LR+E++I++
Sbjct: 268 G--RETYSLPGIPPLPNSNVTKDWIVKVLHTSAAQVNAVCYGAKVMLPGVLRYEDNIDLN 325
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+E+V++TTKGEA+ LGIA MTT+ + TCDHG+VA+IKRVVM+RDTYPRKWGLGP A KK
Sbjct: 326 DEIVIITTKGEAICLGIALMTTSTITTCDHGIVAKIKRVVMERDTYPRKWGLGPNAIRKK 385
Query: 404 KLIAEGKLDKHGKLNEKTPQ 423
++I EGKLDKHG+ N+ TP+
Sbjct: 386 QMIKEGKLDKHGRPNDNTPE 405
>gi|148697287|gb|EDL29234.1| mCG7986 [Mus musculus]
Length = 358
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/314 (73%), Positives = 281/314 (89%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALG 359
+V++TTKGEA+ +G
Sbjct: 333 IVVITTKGEAICMG 346
>gi|154284161|ref|XP_001542876.1| centromere/microtubule-binding protein cbf5 [Ajellomyces capsulatus
NAm1]
gi|150411056|gb|EDN06444.1| centromere/microtubule-binding protein cbf5 [Ajellomyces capsulatus
NAm1]
Length = 400
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/357 (66%), Positives = 279/357 (78%), Gaps = 15/357 (4%)
Query: 130 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDV-AKVARALEA 188
+TGHSGTLDPKVTG LIVCIDRATRLVKS GAGKEYVCV RLHDK+P A+ ARALE
Sbjct: 7 ETGHSGTLDPKVTGCLIVCIDRATRLVKSYLGAGKEYVCVIRLHDKIPGGEAQFARALET 66
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL VFW+SCEAGTY+RT+CVHLGL
Sbjct: 67 LTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHLGVFWVSCEAGTYIRTLCVHLGL 126
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LGVG HMQELRRVRSG + E D MVT+HDV+DAQW+ DN RDE+YLRRVI PLE LLTS
Sbjct: 127 LLGVGAHMQELRRVRSGAMDEKDGMVTLHDVLDAQWMMDNNRDESYLRRVIRPLESLLTS 186
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVM 368
YKR+VVKD+ VNA+CYGAKLMIPGLLRFE+ IE+ EEVVLMTTKGEA+A+ IA+M+T +
Sbjct: 187 YKRIVVKDSAVNAVCYGAKLMIPGLLRFESGIEIHEEVVLMTTKGEAIAIAIAQMSTVEL 246
Query: 369 ATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
+TCDHGVVA++KR +M+RD YPRKWGLGP A KKKL ++GKLDK+G+ NEKTP +W
Sbjct: 247 STCDHGVVAKVKRCIMERDLYPRKWGLGPVALEKKKLKSDGKLDKYGRPNEKTPAKW--- 303
Query: 429 VVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA----SGDSPALNAKKAKVEE 481
+S A + AE TA V A + +P +N EE
Sbjct: 304 -------NSEYKDFNAPLDSGAAEASTASVSTPAPPAVSKEAAPTPQVNGNAPAAEE 353
>gi|123449142|ref|XP_001313293.1| pseudouridine syntase related protein [Trichomonas vaginalis G3]
gi|121895171|gb|EAY00364.1| pseudouridine syntase related protein, putative [Trichomonas
vaginalis G3]
Length = 391
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/380 (60%), Positives = 293/380 (77%), Gaps = 1/380 (0%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
I P + T +IDTS+WP+LLK Y L R G YTPLP G+SPLKRPL DY++YG+INLDKP
Sbjct: 5 IAPSNETSTIDTSKWPLLLKGYSNLVCRDGLYTPLPCGHSPLKRPLKDYMKYGVINLDKP 64
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
+NPSSHE+V+W+KRIL V KTGHSGTLDPKVTG LI+CI+ AT + KSQQ AGKEYV V
Sbjct: 65 SNPSSHEIVSWVKRILGVAKTGHSGTLDPKVTGCLIICIENATCIGKSQQNAGKEYVAVL 124
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
RL + VP K+ A++ LTG ++Q PP ISAVK+QLR+R +Y ++L+EYD ++ L V
Sbjct: 125 RLFETVPR-EKLEEAIKFLTGKLYQCPPAISAVKKQLRVRQVYSNELIEYDDEQKLAVMR 183
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
++CEAGTY+RT+C HLGL LGVGG M ELRR RSG E +VTMHDV+DA++LYD
Sbjct: 184 VACEAGTYIRTLCEHLGLYLGVGGEMAELRRTRSGFTTETCGLVTMHDVLDAKYLYDKEG 243
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
+E YLRRVI PLE +L + KR+VVKD+ ++AIC+GA + IPG++RF+N IE G++VV++T
Sbjct: 244 NEKYLRRVIRPLEWMLRNMKRIVVKDSAIDAICHGAPIYIPGIMRFDNTIETGDQVVVIT 303
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
KGEA+AL IA MT M+ V A +KRV+MDR TY + WG GP A KKKLIAEGK
Sbjct: 304 AKGEAIALAIATMTAQQMSVNQKDVAATLKRVIMDRGTYVKSWGKGPVALEKKKLIAEGK 363
Query: 411 LDKHGKLNEKTPQEWARNVV 430
L+K+GK NEKTP++W RN +
Sbjct: 364 LEKNGKPNEKTPKDWLRNTL 383
>gi|380485605|emb|CCF39254.1| centromere/microtubule-binding protein cbf5 [Colletotrichum
higginsianum]
Length = 411
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/380 (64%), Positives = 289/380 (76%), Gaps = 52/380 (13%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
++F IKPQ+ P +DTS WP+LLKNYD+ N
Sbjct: 12 EEFAIKPQASVPHLDTSNWPLLLKNYDKRN------------------------------ 41
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
VEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEY
Sbjct: 42 ---------------------VEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEY 80
Query: 167 VCVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
V V RLHDK+P + ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL+E+D DRH
Sbjct: 81 VAVIRLHDKLPGGKVQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLIEFDNDRH 140
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG + E MVT+HDV+DAQW
Sbjct: 141 LGVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMDETKGMVTLHDVLDAQWT 200
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
DN RDE+YLR+VI PLE LLTSYKR+VVKD+ VNA+CYGAKLM+PGLLR+E++IEV +E
Sbjct: 201 MDNTRDESYLRKVISPLETLLTSYKRIVVKDSAVNAVCYGAKLMLPGLLRYESEIEVHDE 260
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VVLMTTKGEA+ALGIA+M+T M+TCDHGVVA++KR +M+RD YPR+WGLGP AS KKKL
Sbjct: 261 VVLMTTKGEAIALGIAQMSTVEMSTCDHGVVAKVKRCIMERDLYPRRWGLGPLASEKKKL 320
Query: 406 IAEGKLDKHGKLNEKTPQEW 425
A+GKLDK+G+ NE TP +W
Sbjct: 321 KADGKLDKYGRPNEATPAKW 340
>gi|207343002|gb|EDZ70600.1| YLR175Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 387
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 209/293 (71%), Positives = 253/293 (86%)
Query: 138 DPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRP 197
DPKVTG LIVCIDRATRLVKSQQGAGKEYVC+ RLHD + D + R+LE LTGA+FQRP
Sbjct: 1 DPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKDEKDLGRSLENLTGALFQRP 60
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
PLISAVKRQLR+RTIYES L+E+D R+L VFW SCEAGTY+RT+CVHLG++LGVGGHMQ
Sbjct: 61 PLISAVKRQLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQ 120
Query: 258 ELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
ELRRVRSG L ENDNMVT+HDVMDAQW+YDN RDE+YLR +I PLE LL YKR+VVKD+
Sbjct: 121 ELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETLLVGYKRIVVKDS 180
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
VNA+CYGAKLMIPGLLR+E IE+ +E+VL+TTKGEA+A+ IA+M+T +A+CDHGVVA
Sbjct: 181 AVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVA 240
Query: 378 RIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
+KR +M+RD YPR+WGLGP A KK++ A+GKLDK+G++NE TP++W + V
Sbjct: 241 SVKRCIMERDLYPRRWGLGPVAQKKKQMKADGKLDKYGRVNENTPEQWKKEYV 293
>gi|253744583|gb|EET00773.1| Centromere/microtubule binding protein CBF5 [Giardia intestinalis
ATCC 50581]
Length = 421
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/411 (52%), Positives = 292/411 (71%), Gaps = 15/411 (3%)
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTS++ +LL+ +++L+VR+ +YTP NGY+PL+RP+ +Y++YGIINLDK A PSSHEVVA
Sbjct: 8 DTSEFKLLLEGFNQLHVRSANYTPTQNGYNPLQRPIREYLKYGIINLDKTAGPSSHEVVA 67
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHD------ 174
WI+RIL VEKTGHSGTLDP VTG L+VC+DRATRLVKSQQ GKEYVCV + +
Sbjct: 68 WIRRILEVEKTGHSGTLDPGVTGCLLVCLDRATRLVKSQQLMGKEYVCVLQFRNLSTLKD 127
Query: 175 ---KVPDVAKVARALEALTGAVFQRPPL-ISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+ A++ +AL L A Q PP AVKRQLR+R IY LLE++ +
Sbjct: 128 EDSRKAFSARLQQALATLRCAQLQLPPKEGCAVKRQLRVREIYTLDLLEFNFKTGQAILR 187
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
SC+AGTY+RT+CVH+GL++G +M ELRRVRSG L E NMVT+HDV+D+ W + N
Sbjct: 188 ASCQAGTYMRTLCVHIGLLMGQEAYMLELRRVRSGELTEKTNMVTLHDVLDSFWCWKNMG 247
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLR+V+MPLE LL SYKR+ VKD+++NA+ YGA L I G+LR++ I +G+ VVL++
Sbjct: 248 DESYLRKVVMPLEYLLKSYKRIFVKDSSINALTYGAPLHIQGVLRYDPRISIGDTVVLVS 307
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVALG A M + GVV+++KRV+MDRD Y R+WGLGP A +KK+LI G+
Sbjct: 308 TKGEAVALGTATMGAQDIMGVSRGVVSKVKRVIMDRDLYDRQWGLGPTALLKKQLIKNGQ 367
Query: 411 LDKHGKLNEKTPQEWARNV-----VLPPGGDSVVASLAAAAEQTVAEKETA 456
LDK+G +N+ TP+EW + L G++ S + + + AE++ A
Sbjct: 368 LDKYGGINKDTPKEWVERLQSTEEFLKTAGNTCGNSTESVSTKEAAERQRA 418
>gi|159107547|ref|XP_001704052.1| Centromere/microtubule binding protein CBF5 [Giardia lamblia ATCC
50803]
gi|157432101|gb|EDO76378.1| Centromere/microtubule binding protein CBF5 [Giardia lamblia ATCC
50803]
Length = 421
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/375 (56%), Positives = 276/375 (73%), Gaps = 10/375 (2%)
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTS++ +LL+ +++L+VR+ YTP NGYSPL+RP+ ++++YG+INLDK A PSSHEVVA
Sbjct: 8 DTSEFKLLLEGFNQLHVRSASYTPTQNGYSPLQRPIREHLKYGVINLDKTAGPSSHEVVA 67
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHD------ 174
WI+RIL VEKTGHSGTLDP VTG L+VC+DRATRLVKSQQ GKEYVCV + D
Sbjct: 68 WIRRILEVEKTGHSGTLDPGVTGCLLVCLDRATRLVKSQQLMGKEYVCVLQFKDLAALKD 127
Query: 175 ---KVPDVAKVARALEALTGAVFQRPPL-ISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
+ A + +AL L A Q PP AVKRQLR+R IY LLE++ V
Sbjct: 128 EDARKAFSACLQQALATLRCAQLQLPPKEGCAVKRQLRVREIYTLDLLEFNFKTGQAVLR 187
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
SC+AGTY+RT+CVH+GL++G +M ELRRVRSG L E NMVT+HDV+D+ W + N
Sbjct: 188 ASCQAGTYMRTLCVHIGLLVGHEAYMLELRRVRSGELTEKTNMVTLHDVLDSFWCWKNLG 247
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE+YLR+V+MPLE LL SYKR+ VKD+++NA+ YGA L I G+LR++ I +G+ VVL++
Sbjct: 248 DESYLRKVVMPLEYLLKSYKRIFVKDSSINALTYGAPLHIQGVLRYDPRISIGDTVVLVS 307
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVALG A M + G+V+++KRV+MDRD Y R+WGLGP A +KK+LI G+
Sbjct: 308 TKGEAVALGTATMGAQDIMGVSRGIVSKVKRVIMDRDLYDRQWGLGPTALLKKQLIKNGQ 367
Query: 411 LDKHGKLNEKTPQEW 425
LDK+G +N+ TP+EW
Sbjct: 368 LDKYGGINKDTPKEW 382
>gi|19173642|ref|NP_597445.1| CENTROMERE/MICROTUBULE BINDING PROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|19170848|emb|CAD26622.1| CENTROMERE/MICROTUBULE BINDING PROTEIN [Encephalitozoon cuniculi
GB-M1]
Length = 357
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/331 (58%), Positives = 253/331 (76%), Gaps = 2/331 (0%)
Query: 65 WPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
W +LL N DR+ VRTGHYTPL G PL+R + +YI+YGIIN+DK NPSSHEVV W+K
Sbjct: 20 WDLLLANMDRMVVRTGHYTPLGCGSMPLRRRIEEYIKYGIINVDKSPNPSSHEVVTWVKE 79
Query: 125 ILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVAR 184
IL+ EKTGHSGTLDP+V+G L +CIDRATRL KSQQ GKEYVCV + PD +
Sbjct: 80 ILKCEKTGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLSE-PDEEGFHK 138
Query: 185 ALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
A + L G++FQRPPL+ AVKR+LRIR +Y +LE++ ++ L +F +SCEAGTYVRT+C
Sbjct: 139 ASKRLVGSLFQRPPLMCAVKRELRIRNVYSIDILEFNREKRLGLFKVSCEAGTYVRTLCT 198
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
H+G+++G G M+ELRR RSG + E D T+HD++DA ++++ +DE +RRVI+PLE
Sbjct: 199 HIGILMGCGARMKELRRTRSGRISEKDAF-TLHDLLDAVYIFNTTKDETVIRRVILPLES 257
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
LL Y R+++KD+ VNAICYGAKL I G+LRF+ DI+VG EVV+MTTKGEAVALGIA ++
Sbjct: 258 LLVGYPRIMIKDSCVNAICYGAKLSITGVLRFDRDIDVGTEVVIMTTKGEAVALGIALVS 317
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+ M+ DHG+V R KRV+M++D YPR WG
Sbjct: 318 SPEMSIIDHGLVCRTKRVIMEKDLYPRSWGF 348
>gi|449329137|gb|AGE95411.1| centromere/microtubule binding protein [Encephalitozoon cuniculi]
Length = 357
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/331 (58%), Positives = 252/331 (76%), Gaps = 2/331 (0%)
Query: 65 WPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
W +LL N DR+ VRTGHYTPL G PL+R + +YI+YGIIN+DK NPSSHEVV W+K
Sbjct: 20 WDLLLANMDRMVVRTGHYTPLGCGSMPLRRRIEEYIKYGIINVDKSPNPSSHEVVTWVKE 79
Query: 125 ILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVAR 184
IL+ EKTGHSGTLDP+V+G L +CIDRATRL KSQQ GKEYVCV + PD +
Sbjct: 80 ILKCEKTGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLSE-PDEEGFHK 138
Query: 185 ALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
A + L G++FQRPPL+ AVKR+LRIR +Y +LE++ ++ L +F +SCEAGTYVRT+C
Sbjct: 139 ASKRLVGSLFQRPPLMCAVKRELRIRNVYSIDILEFNREKRLGLFKVSCEAGTYVRTLCT 198
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
H+G+++G G M+ELRR RSG + E D T+HD++DA ++++ +DE +RR I+PLE
Sbjct: 199 HIGILMGCGARMKELRRTRSGRISEKDAF-TLHDLLDAVYIFNTTKDETVIRRAILPLES 257
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
LL Y R+++KD+ VNAICYGAKL I G+LRF+ DI+VG EVV+MTTKGEAVALGIA ++
Sbjct: 258 LLVGYPRIMIKDSCVNAICYGAKLSITGVLRFDRDIDVGTEVVIMTTKGEAVALGIALVS 317
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+ M+ DHG+V R KRV+M++D YPR WG
Sbjct: 318 SPEMSIIDHGLVCRTKRVIMEKDLYPRSWGF 348
>gi|401826417|ref|XP_003887302.1| putative centromere/microtubule binding protein 5 [Encephalitozoon
hellem ATCC 50504]
gi|392998461|gb|AFM98321.1| putative centromere/microtubule binding protein 5 [Encephalitozoon
hellem ATCC 50504]
Length = 357
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/331 (57%), Positives = 254/331 (76%), Gaps = 2/331 (0%)
Query: 65 WPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
W +LL + D++ VRT HYTP G PL R + +YI+YGI+NLDK +NPSSHEVV W+K
Sbjct: 20 WDLLLADMDKMIVRTNHYTPFGCGSMPLNRKIGEYIKYGIVNLDKSSNPSSHEVVTWVKE 79
Query: 125 ILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVAR 184
IL+ EKTGHSGTLDP+V+G L +CIDRATRL KSQQ GKEYVCV ++ PD R
Sbjct: 80 ILKCEKTGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLEE-PDEDGFRR 138
Query: 185 ALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
A + LTG++FQRPPL+ AVKR+LRIR IYE +LE+ ++ + +F +SCEAGTYVRT+C
Sbjct: 139 ASKKLTGSLFQRPPLMCAVKRELRIRNIYEIDILEFSKEKRVGLFKVSCEAGTYVRTLCT 198
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
H+G+++G G M+ELRR+RSG E D + T+HD++DA +++++ +DE +RRVI PLE
Sbjct: 199 HIGILMGCGARMKELRRIRSGRTSEKD-IFTLHDLLDAVYIFNSTKDERVIRRVIRPLES 257
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
LL Y R+++KD+ VNAICYGAKL I G+LRF+ DI+VG EVV++TTKGEAVALG+A ++
Sbjct: 258 LLVGYPRIMIKDSCVNAICYGAKLSIMGVLRFDRDIDVGREVVIITTKGEAVALGVALVS 317
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+ M+ DHG+V R KRV+M++D YPR WG
Sbjct: 318 SPEMSIIDHGLVCRTKRVIMEKDLYPRSWGF 348
>gi|303389361|ref|XP_003072913.1| putative rRNA pseudouridine synthase [Encephalitozoon intestinalis
ATCC 50506]
gi|303302056|gb|ADM11553.1| putative rRNA pseudouridine synthase [Encephalitozoon intestinalis
ATCC 50506]
Length = 357
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/331 (56%), Positives = 250/331 (75%), Gaps = 2/331 (0%)
Query: 65 WPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
W LL + D++ V+T HYTPL G PL R + +YI+YGIINLDK +NPSSHEVV W+K
Sbjct: 20 WDFLLTDMDKMIVKTNHYTPLGCGSMPLNRKIDEYIKYGIINLDKSSNPSSHEVVTWVKE 79
Query: 125 ILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVAR 184
IL+ EKTGHSGTLDP+V+G L VCIDRATRL KSQQ GKEYVCV ++ P +
Sbjct: 80 ILKCEKTGHSGTLDPQVSGVLTVCIDRATRLTKSQQSLGKEYVCVIEFLEE-PSEEGFRK 138
Query: 185 ALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
A E L G++FQRPPL+ AVKR+LRIR IY +LE++ +R L +F +SCEAGTYVRT+C+
Sbjct: 139 AAERLVGSLFQRPPLMCAVKRELRIRNIYSIDILEFNKERRLGLFRVSCEAGTYVRTLCM 198
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
H+G+++G G M+ LRR RSG + E D + T+HD++D ++++ +DE +RRVI PLE
Sbjct: 199 HMGILMGCGAVMKGLRRTRSGRISEKD-IFTLHDLLDGVHIFNSTKDERVIRRVIRPLES 257
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
LL Y R+++KD+ VNAICYGAKL I G+LRF+ +I+VG ++V++TTKGEAVALGIA ++
Sbjct: 258 LLVGYPRIMIKDSCVNAICYGAKLSITGVLRFDRNIDVGMDIVIVTTKGEAVALGIALVS 317
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+ M+ DHG+V R KRV+M++D YPR WG
Sbjct: 318 SPEMSIIDHGLVCRTKRVIMEKDLYPRSWGF 348
>gi|396081419|gb|AFN83036.1| putative rRNA pseudouridine synthase [Encephalitozoon romaleae
SJ-2008]
Length = 357
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/337 (54%), Positives = 256/337 (75%), Gaps = 3/337 (0%)
Query: 60 IDTSQ-WPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEV 118
+ TS+ W +LL + D++ VRT HYTPL G PL R + +YI+YGI+NLDK +NPSSHEV
Sbjct: 14 LSTSETWDLLLADMDKMVVRTNHYTPLGCGSMPLNRKIGEYIKYGIVNLDKSSNPSSHEV 73
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
V W+K IL+ EKTGHSGTLDP+V+G L +CIDRATRL KSQQ GKEYVCV ++ P+
Sbjct: 74 VTWVKEILKCEKTGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLEE-PN 132
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
A+ + + L G++ QRPPL+ AVKR+LR+R IY +LE+ ++ + +F +SCEAGTY
Sbjct: 133 EAEFHKISKRLIGSLLQRPPLMCAVKRELRVRNIYNIDILEFSKEKRVGLFKVSCEAGTY 192
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
VRT+C H+G+++G G M+ELRR RSG E D + T+HD++DA ++++ +DE +RRV
Sbjct: 193 VRTLCTHMGILMGCGAKMKELRRTRSGRTSEKD-IFTLHDLLDAVHIFNSEKDETVIRRV 251
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
I PLE LL Y R+++KD+ VNAICYGAKL + G+LRF+ +I+VG+E+V++TTKGEAVAL
Sbjct: 252 IRPLESLLVGYPRIMIKDSCVNAICYGAKLSVTGVLRFDRNIDVGKEIVIITTKGEAVAL 311
Query: 359 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
GIA +++ M+ DHG+V R KRV+M++D YPR WG
Sbjct: 312 GIALVSSPEMSIIDHGLVCRTKRVIMEKDLYPRSWGF 348
>gi|119874627|gb|ABM05790.1| dyskerin [Gordius aquaticus]
Length = 237
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/237 (75%), Positives = 206/237 (86%)
Query: 143 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISA 202
G LIVC++RATRLVKSQQ AGKEYV + RLH + + ALE +TGA+FQRPPLISA
Sbjct: 1 GCLIVCVERATRLVKSQQNAGKEYVAIVRLHAAIESEKTLLSALEKMTGALFQRPPLISA 60
Query: 203 VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRV 262
VKRQLRIRTIY+SKLLEYD DRHL VFW+SCEAGTY+RT+CVHLG +LGVGGHMQELRRV
Sbjct: 61 VKRQLRIRTIYQSKLLEYDADRHLGVFWVSCEAGTYIRTLCVHLGFVLGVGGHMQELRRV 120
Query: 263 RSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAI 322
RSGI E+++MVTMHDVMDAQW YDN RDE+YLRR I PLE+LL +KR+VVKD+ VNAI
Sbjct: 121 RSGIQSEDEHMVTMHDVMDAQWQYDNQRDESYLRRTIRPLELLLVKHKRIVVKDSAVNAI 180
Query: 323 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARI 379
CYGAKLM+PGLLR+ + IE+ EEVVLM+TKGEA+ALGIA+MTTAVMATC HGVVA I
Sbjct: 181 CYGAKLMLPGLLRYADGIELNEEVVLMSTKGEAIALGIAQMTTAVMATCGHGVVATI 237
>gi|119874607|gb|ABM05780.1| dyskerin [Astropecten brasiliensis]
Length = 241
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 173/241 (71%), Positives = 212/241 (87%)
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG LIVCI RATRLVKSQQ AGKEYVC+ RLH + + A++AR LE LTGA+FQRPPLIS
Sbjct: 1 TGCLIVCISRATRLVKSQQSAGKEYVCIVRLHSAIDNQAQLARTLETLTGALFQRPPLIS 60
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RT+YESKL+EYD RHL +FW+SCEAGTYVRT+CVH+GL+LGVGG M ELRR
Sbjct: 61 AVKRQLRVRTVYESKLIEYDDKRHLGIFWLSCEAGTYVRTLCVHIGLLLGVGGQMAELRR 120
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGI E D++VTMHDV+DAQW+YDN++DE Y+RRV+ PLE LLTS+KR+++KD+ +NA
Sbjct: 121 VRSGIQSEKDHLVTMHDVLDAQWVYDNHKDEEYMRRVVKPLEALLTSHKRIIMKDSAINA 180
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
ICYGAK+M+PG+LRFE+ IEV E++++TTKGEAVAL +A MTTAVMATC GVVA++KR
Sbjct: 181 ICYGAKVMLPGVLRFEDGIEVNAEIIIVTTKGEAVALAVALMTTAVMATCAPGVVAKLKR 240
Query: 382 V 382
V
Sbjct: 241 V 241
>gi|119874605|gb|ABM05779.1| dyskerin [Asterias rubens]
Length = 239
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/238 (73%), Positives = 209/238 (87%)
Query: 145 LIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
LIVCI++ATRLVKSQQ AGKEYVC+ RLH V + +K+ARA+E LTGA+FQRPPLISAVK
Sbjct: 2 LIVCIEKATRLVKSQQSAGKEYVCIVRLHSAVENESKLARAIETLTGALFQRPPLISAVK 61
Query: 205 RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRS 264
RQLR+RT+YESKLLE+D RHL +FW+SCEAGTYVRT+CVHLGL+LGVG M ELRRVRS
Sbjct: 62 RQLRVRTVYESKLLEFDDKRHLGIFWLSCEAGTYVRTLCVHLGLLLGVGAQMAELRRVRS 121
Query: 265 GILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
GI E + +VTMHD+ DAQW+YDN++DE YLRR I PLE LLTS+KR+V+KD+ VNA+C
Sbjct: 122 GIQSEKEGLVTMHDIXDAQWVYDNHKDEKYLRRCIKPLEALLTSHKRIVLKDSAVNAVCX 181
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
GAK+M+PG+LRFE+ IE+ EVV+MTTKGEA+ LGIA MTTAVMATCDHGVVA++KRV
Sbjct: 182 GAKVMLPGVLRFEDGIEINSEVVVMTTKGEAIXLGIALMTTAVMATCDHGVVAKLKRV 239
>gi|387593663|gb|EIJ88687.1| centromere/microtubule-binding protein CBF5 [Nematocida parisii
ERTm3]
gi|387597319|gb|EIJ94939.1| centromere/microtubule-binding protein CBF5 [Nematocida parisii
ERTm1]
Length = 422
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/341 (51%), Positives = 241/341 (70%), Gaps = 3/341 (0%)
Query: 62 TSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAW 121
+ WP+LLK + +N+++ YTP GY PL+RPL Y+ YG+INLDKP NPSSHE+V+W
Sbjct: 37 SGDWPLLLKGMEDMNIKSLKYTPTSYGYCPLERPLDIYLEYGVINLDKPCNPSSHEIVSW 96
Query: 122 IKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAK 181
IK ILR E+TGHSGTLDP V+G L VC+++ATR+ K QQ AGKEYV V + + V K
Sbjct: 97 IKSILRCERTGHSGTLDPMVSGCLPVCLNKATRIAKCQQDAGKEYVGVVKFDEGVSK-EK 155
Query: 182 VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRT 241
AL G + QRPP AVKR LRIR + + + L++D ++ L +F + CEAGTY+R+
Sbjct: 156 FIEALNLFVGPLLQRPPEQCAVKRNLRIRKVNQVEYLDFDEEKQLGLFRVDCEAGTYIRS 215
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+C HLGL LGV M +LRR RSG + E DN+VTMHDV+DA +L+ D++YLR V+ P
Sbjct: 216 LCTHLGLYLGVKSEMVDLRRTRSGAVSE-DNLVTMHDVLDAMYLHQKTMDQSYLRAVVQP 274
Query: 302 LEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
LE LL Y R+++KD+ +NAICYG +L G+LR+ D + +VL++ KGEAVAL +A
Sbjct: 275 LESLLVGYPRVIIKDSCINAICYGGQLTAKGVLRY-GDFNHKDTIVLVSPKGEAVALAVA 333
Query: 362 EMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
+T+ ++ +HGVV R KRV+M++DTY R+W LGP+A K
Sbjct: 334 LVTSPQLSMMEHGVVCRTKRVIMNKDTYQRQWKLGPQAHTK 374
>gi|256083759|ref|XP_002578106.1| centromere/microtubule binding protein cbf5 [Schistosoma mansoni]
Length = 327
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/297 (62%), Positives = 233/297 (78%), Gaps = 2/297 (0%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+ F + + P++D SQWP+LLKN +NVR H+ GYSPL RPL +YI+ G+I
Sbjct: 17 AESFAVISEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGYSPLHRPLDEYIKSGVI 76
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRLVKSQQ AGKE
Sbjct: 77 NLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRLVKSQQSAGKE 136
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YVC+ RLH+ V ++ K+ +A+E LTGA+FQRPPL++AVKRQLR+RTIYE KLLEY+ ++
Sbjct: 137 YVCIFRLHESVDEIKKIQKAVEGLTGALFQRPPLVAAVKRQLRVRTIYECKLLEYEKSKN 196
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L + + CEAGTYVRT+CVHLGL+LG GG M+ELRR ++G + E DN+VTMHD++DA+WL
Sbjct: 197 LGLIMVRCEAGTYVRTLCVHLGLLLGCGGVMEELRRSKTGFMSERDNLVTMHDILDAKWL 256
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICY--GAKLMIPGLLRFENDI 340
YDN RDE YLRRVIMPLE LL +KR+++KDT V++ Y +L + LLR E +
Sbjct: 257 YDNRRDETYLRRVIMPLEKLLIKHKRIMLKDTAVSSFTYRSMCRLGVRYLLRCETYV 313
>gi|119874623|gb|ABM05788.1| dyskerin [Archispirostreptus gigas]
Length = 233
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/233 (72%), Positives = 208/233 (89%)
Query: 150 DRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
DRATRLVKSQQ AGKEYVC+ +LH+ V ++A ALE LTGA FQRPPLISAVKRQLRI
Sbjct: 1 DRATRLVKSQQSAGKEYVCILKLHEAVESEKQIALALETLTGAQFQRPPLISAVKRQLRI 60
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
RTIYESKLLEY+ ++++V+FW+ CEAGTY+RT+CVHLGL+LGVGG MQELRRVRSGI E
Sbjct: 61 RTIYESKLLEYNSEQNMVIFWVKCEAGTYIRTLCVHLGLVLGVGGKMQELRRVRSGIQSE 120
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
+DN+VTMHD++DAQWLYDN++DE+ LRRVI PLE LL S+KR++VKD+ VNAICYGAK+M
Sbjct: 121 HDNLVTMHDLLDAQWLYDNHKDESLLRRVIKPLEALLVSHKRIIVKDSAVNAICYGAKIM 180
Query: 330 IPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
+PG+LR++N IE+ +E+V++TTKGEAVAL IA MTTA +A+CDHGVVA+IKRV
Sbjct: 181 LPGVLRYDNGIELNQEIVIVTTKGEAVALAIALMTTATIASCDHGVVAKIKRV 233
>gi|119874633|gb|ABM05793.1| dyskerin [Phoronis vancouverensis]
Length = 241
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/241 (74%), Positives = 216/241 (89%)
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG LIVCI+RATRLVKSQQGAGKEYVC+ RLH V D+ +VA+ +E LTGA+FQRPPLIS
Sbjct: 1 TGCLIVCIERATRLVKSQQGAGKEYVCIFRLHSAVDDLKRVAQGIETLTGALFQRPPLIS 60
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RT+YESKL+EYD +R++ VFW+SCEAGTY+RTMCVHLGL+LGVGG MQELRR
Sbjct: 61 AVKRQLRVRTVYESKLIEYDQERNMGVFWVSCEAGTYIRTMCVHLGLLLGVGGQMQELRR 120
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGI E + +VTMHDV+DAQW YDN +DE YLRRVI PLE LLT +KR+V+KD+ VNA
Sbjct: 121 VRSGIQSEKEGLVTMHDVLDAQWQYDNNKDETYLRRVIKPLEALLTGHKRIVLKDSAVNA 180
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
+CYGAK+M+PG+LR+E+ IEV +E+V++TTKGEAVAL IA+MTTAVMATCDHGVVA++KR
Sbjct: 181 VCYGAKIMLPGVLRYEDGIEVNDEIVIITTKGEAVALAIAQMTTAVMATCDHGVVAKLKR 240
Query: 382 V 382
V
Sbjct: 241 V 241
>gi|378755245|gb|EHY65272.1| rRNA pseudouridine synthase [Nematocida sp. 1 ERTm2]
Length = 421
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 169/341 (49%), Positives = 242/341 (70%), Gaps = 3/341 (0%)
Query: 62 TSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAW 121
+ +WP+LLK + +N+++ YTP GYSPL+RPL Y+ YG+INLDKP NPSSHE+V+W
Sbjct: 37 SGEWPLLLKGLEDMNIKSLKYTPTSYGYSPLERPLNIYLEYGVINLDKPCNPSSHEIVSW 96
Query: 122 IKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAK 181
IK ILR EKTGHSGTLDP V+G L VC+++ATR+ K QQ AGKEYV V + + +
Sbjct: 97 IKNILRCEKTGHSGTLDPMVSGCLPVCLNKATRIAKCQQDAGKEYVGVVKFDEGITKEMF 156
Query: 182 VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRT 241
+ + L G + QRPP AVKR LRIR + E + L++D ++ L +F ++CEAGTY+R+
Sbjct: 157 I-KTLNLYVGPLLQRPPEQCAVKRNLRIRKVIEVEYLDFDEEKQLGMFRVACEAGTYIRS 215
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+C HLGL +GV M +LRR RSG + E D++VTMHDV+D+ L+ DE+YLR V+ P
Sbjct: 216 LCTHLGLHMGVKSEMVDLRRTRSGAVHE-DSLVTMHDVLDSMHLHQTKMDESYLRAVVKP 274
Query: 302 LEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
LE LL Y R+++KD+ +N+IC+G +L G+LR+ D + + +VL++ KGEAVAL A
Sbjct: 275 LESLLVGYPRIIIKDSCINSICFGGQLTAKGVLRY-GDFDHKDTIVLVSPKGEAVALATA 333
Query: 362 EMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMK 402
+T+ ++ DHG+V + KRV+M++DTY ++W LGP+ K
Sbjct: 334 LVTSPQLSMMDHGIVCKTKRVIMNKDTYQKQWKLGPQTHKK 374
>gi|47214790|emb|CAF89617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 285
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/251 (69%), Positives = 216/251 (86%), Gaps = 7/251 (2%)
Query: 182 VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRT 241
+ +ALE LTGA+FQRPPLI+AVKRQLR+RTIYESKL+EYD +R +FW+SCEAGTY+RT
Sbjct: 27 LLKALEMLTGALFQRPPLIAAVKRQLRVRTIYESKLIEYDPERRFGIFWVSCEAGTYIRT 86
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+CVHLGL+LGVGG MQELRRVRSG+LGE DNMVTMHDV+DAQW +D+ +DE+YLRRVI P
Sbjct: 87 LCVHLGLLLGVGGQMQELRRVRSGVLGEKDNMVTMHDVLDAQWQFDHNKDESYLRRVIFP 146
Query: 302 LEVLLTSYKRLVVKD-------TTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGE 354
LE LL S+KRLV+KD T VNAICYGAK+M+PG+LR+E+ IE+ +++V++TTKGE
Sbjct: 147 LEKLLVSHKRLVMKDSAVSLFVTLVNAICYGAKIMLPGVLRYEDGIELNQDIVVITTKGE 206
Query: 355 AVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKH 414
A+ +A MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKH
Sbjct: 207 AICTAVALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKMMIQKGLLDKH 266
Query: 415 GKLNEKTPQEW 425
GK N TP +W
Sbjct: 267 GKANSSTPADW 277
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPL 96
DF IKP+S PS+DTS WP+LLK + L TG P + +KR L
Sbjct: 7 DFFIKPESKVPSLDTSHWPLLLKALEML---TGALFQRPPLIAAVKRQL 52
>gi|119874631|gb|ABM05792.1| dyskerin [Paraspadella gotoi]
Length = 232
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 165/232 (71%), Positives = 206/232 (88%), Gaps = 1/232 (0%)
Query: 152 ATRLVKSQQGAGKEYVCVARLH-DKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATRLVKSQQ AGKEYV +AR H D ++ARALE LTGA+FQRPPLI+AVKRQLR+R
Sbjct: 1 ATRLVKSQQSAGKEYVGIARFHGDIAGGTQEMARALEMLTGALFQRPPLIAAVKRQLRVR 60
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
TIYESKLL++D +R++ VFWISCEAGTYVRT+CVHLGL+LGVGG MQELRRVRSG+L E
Sbjct: 61 TIYESKLLQFDEERNMAVFWISCEAGTYVRTLCVHLGLVLGVGGIMQELRRVRSGVLSEA 120
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
DN+ TMHDV+DAQWLYDN++DE+YLRRV+ PLE LLT +KR+++KD+ VNA+CYGAK+M+
Sbjct: 121 DNLATMHDVLDAQWLYDNHKDESYLRRVVTPLEALLTGHKRIIMKDSAVNAVCYGAKIML 180
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
PGLLR+E+ IE+ +E+V++TTKGEA+ + IA MTT+V+ATCDHG+VA+IKRV
Sbjct: 181 PGLLRYEDGIELNQEIVVVTTKGEAICIAIALMTTSVIATCDHGIVAKIKRV 232
>gi|119874635|gb|ABM05794.1| dyskerin [Priapulus caudatus]
Length = 233
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 175/232 (75%), Positives = 208/232 (89%)
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
RATRLVKSQQGAGKEYV V R H V K+A+A+E LTGA+FQRPPLISAVKRQLRIR
Sbjct: 2 RATRLVKSQQGAGKEYVAVVRFHSAVESQQKLAQAVETLTGALFQRPPLISAVKRQLRIR 61
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
TIYESKL EYD D+++ VFW+SCEAGTY+RT+CVHLGL+LG+GG MQELRRVRSGIL E
Sbjct: 62 TIYESKLSEYDNDKNMGVFWVSCEAGTYIRTLCVHLGLLLGIGGQMQELRRVRSGILSEQ 121
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
DN+VTMHDVMDAQWLYDN++DE+YLRRVI PLE LLTS+KR+++KD+ VNA+CYGAK+M+
Sbjct: 122 DNLVTMHDVMDAQWLYDNHKDESYLRRVISPLEKLLTSHKRVILKDSAVNAVCYGAKVML 181
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
PG+LR+E+ IE+ +E+V++TTKGE VAL IA MTTAVMATCDHGVVA+IKRV
Sbjct: 182 PGVLRYEDGIELNQEIVIVTTKGEGVALAIALMTTAVMATCDHGVVAKIKRV 233
>gi|119874621|gb|ABM05787.1| dyskerin [Sycon sp. SJB-2006]
Length = 233
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 165/220 (75%), Positives = 192/220 (87%)
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG LIVCIDRATRLVKSQQGAGKEYVCV RLH V D ++AR +E LTGA+FQRPPLIS
Sbjct: 1 TGCLIVCIDRATRLVKSQQGAGKEYVCVVRLHSAVEDNTQLARTIEQLTGALFQRPPLIS 60
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RTIYESKL E+ DRHL VFW+SCEAGTY+RT+CVH+GL++GVG HMQELRR
Sbjct: 61 AVKRQLRVRTIYESKLFEFXQDRHLGVFWVSCEAGTYIRTLCVHIGLLMGVGAHMQELRR 120
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGI EN+ +VTMHDV+DAQW DN +DE Y+RRV+ PLE LLT +KRLVVKD+ VNA
Sbjct: 121 VRSGIQNENEGLVTMHDVLDAQWSLDNCKDETYMRRVVKPLEALLTGHKRLVVKDSAVNA 180
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
ICYGAKLMIPGLLR+E+ IE+ +E+V+M+TKGE VALGIA
Sbjct: 181 ICYGAKLMIPGLLRYESGIELNQEIVIMSTKGEXVALGIA 220
>gi|119874615|gb|ABM05784.1| dyskerin [Leptochiton sp. SJB-2006]
Length = 241
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 171/241 (70%), Positives = 213/241 (88%)
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG LIVCI+RATRLVKSQQGAGKEYVC+ +LH +V + V + LE+LTGA+FQRPPLIS
Sbjct: 1 TGCLIVCIERATRLVKSQQGAGKEYVCIFKLHSQVKEERIVKQNLESLTGALFQRPPLIS 60
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLRIRT+YE K+LEYD ++ + +FW+SCEAGTY+RTMCVHLGL+LGVGG MQELRR
Sbjct: 61 AVKRQLRIRTVYECKMLEYDQEKAMGIFWVSCEAGTYIRTMCVHLGLLLGVGGQMQELRR 120
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGI E + VTMHDV+DAQW YDN++DE YLRRVI PLE LL S+KRL++KD+ +NA
Sbjct: 121 VRSGIQSEKEGCVTMHDVLDAQWQYDNHKDEEYLRRVIKPLEALLVSHKRLILKDSAINA 180
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
+CYGAK+M+PG+LR+++ IE+ +E+V++TTKGEA+ALGIA+MTTAVMATCDHG+ A+IKR
Sbjct: 181 VCYGAKIMLPGVLRYQDGIELNDEIVIVTTKGEAIALGIAQMTTAVMATCDHGIAAKIKR 240
Query: 382 V 382
V
Sbjct: 241 V 241
>gi|119874603|gb|ABM05778.1| dyskerin [Arenicola marina]
Length = 241
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/241 (70%), Positives = 213/241 (88%)
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG LIVCI+RATRLVKSQQ AGKEYVC+ +LH V D K+A+A+ LTGA+FQRPPLIS
Sbjct: 1 TGCLIVCIERATRLVKSQQSAGKEYVCIFKLHSAVEDEKKIAQAITTLTGALFQRPPLIS 60
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RTIYESK++EYD +++L + W+SCEAGTY+RT+CVHLGL+LGVGG MQELRR
Sbjct: 61 AVKRQLRVRTIYESKMIEYDQEKNLGILWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRR 120
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGI E D ++TMHDV+DAQ+ YD+ +DE+YLRRVI PLE LL S+KR+V+KD+ VNA
Sbjct: 121 VRSGIQSEKDGLMTMHDVLDAQYTYDHNKDESYLRRVIKPLEALLVSHKRIVLKDSAVNA 180
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
+CYGAK+M+PG+LR+E+ IE+ EE+V++TTKGEAVAL +A+MTTAV+ATCDHG VA+IKR
Sbjct: 181 VCYGAKIMLPGVLRYEDGIEINEEIVIVTTKGEAVALALAQMTTAVIATCDHGQVAKIKR 240
Query: 382 V 382
V
Sbjct: 241 V 241
>gi|390367959|ref|XP_786768.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial
[Strongylocentrotus purpuratus]
Length = 253
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 167/222 (75%), Positives = 197/222 (88%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP+S ++T+ WP+LLKNYD+LN+RTGHYTPLPNG SPLKR + +Y+ G INL
Sbjct: 24 DFLIKPESAAAKLETAHWPLLLKNYDKLNIRTGHYTPLPNGCSPLKREIKEYVSSGFINL 83
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVV+W+K+ILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV
Sbjct: 84 DKPANPSSHEVVSWVKKILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYV 143
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD + + +K+A+A+E LTGA+FQRPPLISAVKRQLR+RTIYESKL+EYD RHL
Sbjct: 144 CIVRLHDAIENQSKLAKAIETLTGALFQRPPLISAVKRQLRVRTIYESKLIEYDPQRHLG 203
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
+FW+SCEAGTY+RT+CVHLGL+LGVGG M ELRRVRSGI E
Sbjct: 204 IFWVSCEAGTYIRTLCVHLGLLLGVGGQMAELRRVRSGIQSE 245
>gi|119874625|gb|ABM05789.1| dyskerin [Echiurus echiurus]
Length = 241
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 172/241 (71%), Positives = 212/241 (87%)
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG LIVCI+RATRLVKSQQ AGKEYVCV +LH V + K+A +E L GA+FQRPPLIS
Sbjct: 1 TGCLIVCIERATRLVKSQQSAGKEYVCVFKLHSAVENERKIAAGIETLRGALFQRPPLIS 60
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RTIYESK++EYD +R+L V W+SCEAGTY+RT+CVHLGL+LGVGG MQELRR
Sbjct: 61 AVKRQLRVRTIYESKMIEYDKERNLGVLWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRR 120
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGI E D MVTMHDV+DAQ+++D+++DE YLRRVI PLE LL S+KR+++KD+ VNA
Sbjct: 121 VRSGIQSETDRMVTMHDVLDAQFVHDHHKDEEYLRRVIKPLEALLVSHKRIILKDSAVNA 180
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKR 381
+CYGAK+M+PG+LR+E+ IEV E++V++TTKGEAVAL IA+MTTAVMATCDHG VA++KR
Sbjct: 181 VCYGAKIMLPGVLRYEDGIEVDEQIVIVTTKGEAVALAIAQMTTAVMATCDHGQVAKLKR 240
Query: 382 V 382
V
Sbjct: 241 V 241
>gi|119874643|gb|ABM05798.1| dyskerin [Phascolion strombus]
Length = 235
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 169/233 (72%), Positives = 209/233 (89%)
Query: 150 DRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
+RATRLVKSQQGAGKEYVC+ RLH V D K+AR++E LTGA+FQRPPLISAVKRQLR+
Sbjct: 3 ERATRLVKSQQGAGKEYVCIFRLHSAVNDEMKLARSVETLTGALFQRPPLISAVKRQLRV 62
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
RTIYESKL+EYD +R+L + W+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSGI E
Sbjct: 63 RTIYESKLIEYDNERNLGILWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGIQSE 122
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
D +TMHDVMDAQW+YD+++DE YLRRVI PLE LLTS+KR+++KDT VNA+CYGAK+M
Sbjct: 123 KDETMTMHDVMDAQWVYDHHKDETYLRRVIKPLEALLTSHKRIILKDTAVNAVCYGAKIM 182
Query: 330 IPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
+PG+LR+++ IE+ +E+ ++TTKGEAVAL IA+MTTAV+ATCDHG+VA+IKRV
Sbjct: 183 LPGVLRYDDGIEINDEIAIVTTKGEAVALAIAQMTTAVIATCDHGMVAKIKRV 235
>gi|119874609|gb|ABM05781.1| dyskerin [Tetranychus urticae]
Length = 233
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 160/233 (68%), Positives = 203/233 (87%)
Query: 150 DRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
+RATRLVKSQQGAGKEYV + RLH V + KV A+E LTGA+FQRPPLISAVKRQLR+
Sbjct: 1 ERATRLVKSQQGAGKEYVGIFRLHAPVENEKKVLSAVETLTGALFQRPPLISAVKRQLRV 60
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
RTIYESKLLE++ D+ + V ISCEAGTY+RT+CVH+GL+LG GG M ELRR+RSGI+ E
Sbjct: 61 RTIYESKLLEFNNDKGIGVISISCEAGTYIRTLCVHIGLVLGTGGQMIELRRIRSGIVTE 120
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
DN+VTMHD++DAQWLY+N+ DE YLRRVI PLE LLTS+KR+++KD++VNAICYGAK+M
Sbjct: 121 YDNLVTMHDILDAQWLYENHNDETYLRRVIQPLEALLTSHKRIIMKDSSVNAICYGAKIM 180
Query: 330 IPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
+PG+LR+++ IE+G E+V++TTKGEA+ + IA MTT+ +A+CDHGVVA+IKRV
Sbjct: 181 LPGVLRYDDGIEIGAEIVILTTKGEAICIAIALMTTSTIASCDHGVVAKIKRV 233
>gi|119874617|gb|ABM05785.1| dyskerin [Ciona intestinalis]
Length = 238
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 167/238 (70%), Positives = 213/238 (89%)
Query: 145 LIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
LIVC++RATRLVKSQQ AGKEYVC+ RLH + + K+ARA+E LTGA+FQRPPLISAVK
Sbjct: 1 LIVCVERATRLVKSQQSAGKEYVCIVRLHGMIENQLKLARAIETLTGALFQRPPLISAVK 60
Query: 205 RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRS 264
RQLR+RTIY+SKLLEYD+D+ L VFW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRS
Sbjct: 61 RQLRVRTIYQSKLLEYDMDKRLGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRS 120
Query: 265 GILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
GI+ E+D++VTMHDV+DAQ+ D+++DE +LRRVI PLE LL S+KR+++KD+ VNAICY
Sbjct: 121 GIMSESDDLVTMHDVLDAQYQLDHHKDETHLRRVISPLEKLLVSHKRIILKDSAVNAICY 180
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
GAK+++PG+LR+E+ IEV +E+V++TTKGEA+ L IA MTTAV++TCDHG+ A+IKRV
Sbjct: 181 GAKILLPGVLRYEDGIEVNQEIVIITTKGEAICLAIALMTTAVISTCDHGIAAKIKRV 238
>gi|119874619|gb|ABM05786.1| dyskerin [Triops longicaudatus]
Length = 219
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 159/219 (72%), Positives = 192/219 (87%)
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG LIVCIDRATRLVKSQQGAGKEYVC+ +LH V V KVA+ LE L GA+FQRPPLIS
Sbjct: 1 TGCLIVCIDRATRLVKSQQGAGKEYVCIFKLHSSVEKVTKVAQCLERLKGALFQRPPLIS 60
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RT+YESKL+EYD +++ +FW+SCEAGTY+RTMCVHLGL+LGVGG MQELRR
Sbjct: 61 AVKRQLRVRTVYESKLIEYDESKNMGIFWVSCEAGTYIRTMCVHLGLMLGVGGQMQELRR 120
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGI EN MVTM DV DAQWLYDN++DE+YLRRVI PLE LLT +KR+++KD+ VNA
Sbjct: 121 VRSGIQSENQGMVTMTDVHDAQWLYDNHKDESYLRRVIRPLEALLTGHKRIIMKDSAVNA 180
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
+CYGAK+M+PG+LR+E+ IE+ +E+V+MT KGEA+ALGI
Sbjct: 181 VCYGAKIMLPGVLRYEDGIELNQEIVIMTVKGEAIALGI 219
>gi|429961806|gb|ELA41350.1| tRNA pseudouridine synthase B [Vittaforma corneae ATCC 50505]
Length = 339
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 231/329 (70%), Gaps = 4/329 (1%)
Query: 67 ILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL 126
+LLKN D++ V++ + P +G P+ RP+ +Y++YG++ +DKPANPSSHEVV W+K IL
Sbjct: 6 LLLKNQDQMVVKSRDHNPSGHGTMPVNRPIGEYLKYGVVTVDKPANPSSHEVVTWVKGIL 65
Query: 127 RVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARAL 186
EKTGHSGTLDPKVTG L +C++RATRL KSQQ AGK YVC D K + A
Sbjct: 66 DCEKTGHSGTLDPKVTGVLSICLNRATRLTKSQQNAGKTYVCCIEF-DTETTAEKFSNAC 124
Query: 187 EALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHL 246
LTG +FQRPP++ AVKR LR+R IY ++E+ + +F + CEAG+Y+RT+C H+
Sbjct: 125 RKLTGHLFQRPPVMCAVKRDLRLRWIYAINIIEF--TPKMALFEVRCEAGSYIRTLCTHI 182
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
GL +G G M +LRR +SG+ E D VT+HDV DA ++Y +E YLR+V+ PLE LL
Sbjct: 183 GLYIGCGAAMADLRRTQSGLTTE-DECVTLHDVQDAYYMYKKTGEERYLRKVVRPLETLL 241
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
SY R++++D+ VNAICYG +L +PG+LR++ D + VVLMT KGEAVA+ + ++
Sbjct: 242 VSYPRIMIRDSAVNAICYGGQLSVPGVLRYDRDFDTNSTVVLMTAKGEAVAIAQPLVASS 301
Query: 367 VMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+A + G++ + KRV+M++D YPR WG+
Sbjct: 302 QLAEMERGIITKTKRVIMEKDLYPRVWGI 330
>gi|119874629|gb|ABM05791.1| dyskerin [Limulus polyphemus]
Length = 233
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 164/233 (70%), Positives = 204/233 (87%)
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG LIVCI+RATRLVKSQQGAGKEYVC+ RLH + +V + LE L GA+FQRPPLIS
Sbjct: 1 TGCLIVCIERATRLVKSQQGAGKEYVCIFRLHSAPENQQQVVKCLEGLNGALFQRPPLIS 60
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AVKRQLR+RTIYE+KLLEYD ++H+ +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRR
Sbjct: 61 AVKRQLRVRTIYETKLLEYDQEKHMGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRR 120
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNA 321
VRSGI E + +VTMHDV+DAQWLYDN++DE+YLRRVI P+E LL S+KR+++KD+ VNA
Sbjct: 121 VRSGIQSEKEGLVTMHDVLDAQWLYDNHKDESYLRRVIRPVEGLLVSHKRVIMKDSAVNA 180
Query: 322 ICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHG 374
+CYGAK+M+PG+LRFE+ IE+ EE+V++TTKGEA+AL IA MTTA +A+ DHG
Sbjct: 181 VCYGAKIMLPGVLRFEDGIELNEEIVIVTTKGEAIALAIALMTTATIASWDHG 233
>gi|124783623|gb|ABN14933.1| putative centromere/microtubule binding protein [Taenia asiatica]
Length = 253
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 152/236 (64%), Positives = 192/236 (81%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F+I+ + TP +DTS WP+LLK+ +NVR H+ P GYSPL RPL +YI++G+INLD
Sbjct: 18 FVIQSEDTTPKLDTSNWPLLLKSVHLMNVRDCHFEPSERGYSPLNRPLTEYIKHGVINLD 77
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NP SHEVVAW+KR L+VEKTGHSGTLDPKVTG LIVCIDR+TRLVKSQQ AGK Y+
Sbjct: 78 KPSNPPSHEVVAWVKRALKVEKTGHSGTLDPKVTGCLIVCIDRSTRLVKSQQNAGKVYIA 137
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ RLH+ P++ ++ + EAL GA+FQRPP++SAV+RQLRIRTI+ S LLEYD + + +
Sbjct: 138 IFRLHEGAPNIKRIQQVCEALKGALFQRPPVVSAVRRQLRIRTIFRSDLLEYDPVKRMGL 197
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQW 284
+ CEAGTYVRT CVH+GL+LG GG M+ELRR+RSG+L E DNMVTMHDV+DA+W
Sbjct: 198 VRLDCEAGTYVRTYCVHVGLMLGCGGVMEELRRIRSGVLTEEDNMVTMHDVLDAKW 253
>gi|269859328|ref|XP_002649389.1| centromere/microtubule binding protein cbf5 [Enterocytozoon
bieneusi H348]
gi|220067152|gb|EED44619.1| centromere/microtubule binding protein cbf5 [Enterocytozoon
bieneusi H348]
Length = 355
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/328 (50%), Positives = 224/328 (68%), Gaps = 4/328 (1%)
Query: 68 LLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR 127
LL+N D+L R Y P NG P RP+ YI YGIIN+DKP+NPSSHEV W+K IL
Sbjct: 14 LLENIDQLITRDTTYVPSGNGCMPKNRPIKKYIDYGIINIDKPSNPSSHEVTTWVKTILN 73
Query: 128 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALE 187
KTGHSGTLDP VTG L VCI+RATRL KSQQ GK Y+CV + ++ + K A +
Sbjct: 74 CNKTGHSGTLDPNVTGVLTVCINRATRLAKSQQSLGKTYICVIQFEKEISE-KKFINACK 132
Query: 188 ALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
LTG + QRPPL+ AVKR+LR+R IY K+LE+ ++ L+ + CEAG+Y+RT+C+H+G
Sbjct: 133 KLTGHLLQRPPLLCAVKRELRLRWIYSIKILEFSGNKGLIEVY--CEAGSYIRTLCMHIG 190
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
L +GV M +LRR++SG + E + T+HD++DA +LY +E YLR++I PLE LL
Sbjct: 191 LYVGVPAEMADLRRIKSGNVTEYE-CFTLHDLLDAVYLYKKNNNEKYLRKIIKPLESLLI 249
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAV 367
+YKR+V+KDT V AIC GAKL I G+ +++ I+ + +V+MT KGEAVALG +
Sbjct: 250 NYKRIVIKDTAVAAICSGAKLSIQGVFKYDATIDTTDTIVIMTGKGEAVALGTPLICGTE 309
Query: 368 MATCDHGVVARIKRVVMDRDTYPRKWGL 395
T G V + RV+M+ +TYP+ WG+
Sbjct: 310 FKTMTTGFVCKPIRVIMEENTYPKCWGI 337
>gi|440493772|gb|ELQ76199.1| Pseudouridine synthase [Trachipleistophora hominis]
Length = 387
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/330 (49%), Positives = 233/330 (70%), Gaps = 4/330 (1%)
Query: 67 ILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL 126
+LL + D++ V+T +T G P KR + +Y++YG+I LDKP NPSSHEVV WIK IL
Sbjct: 53 VLLYDIDKMFVKTSCFTTQGRGSYPEKRKMSEYLKYGVIYLDKPKNPSSHEVVTWIKNIL 112
Query: 127 RVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARAL 186
+VEKTGH GTLDPKV+G L V ++R TRL K +Q AGKEYVC+ ++ KV + K AL
Sbjct: 113 KVEKTGHGGTLDPKVSGVLTVYLNRGTRLSKIEQNAGKEYVCIVQIDGKVSE-EKFKDAL 171
Query: 187 EALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY-DVDR-HLVVFWISCEAGTYVRTMCV 244
G + QRPPLISAVKR +R+R++Y+++ LE +VD +F +SCEAGTY+R +C
Sbjct: 172 RFFEGRLIQRPPLISAVKRNVRMRSVYKNEFLELKEVDGVSYGLFKVSCEAGTYIRVLCE 231
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
H+GL +G+ M ELRR RSG + E + TMHDV+D+ ++++N DE Y+RRV+ P+E
Sbjct: 232 HIGLYMGIKAEMLELRRTRSGSIRE-EQCFTMHDVLDSHYIFENKGDERYIRRVVHPIEY 290
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
L +YKR++VKD+ V+A+C GAKL + G++RF+ +I VGE+VV++TTKGEAV L ++
Sbjct: 291 SLRNYKRIMVKDSCVDALCSGAKLSLNGVIRFDRNINVGEKVVVITTKGEAVVLAETLVS 350
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWG 394
A M ++G+VA RV+M++ Y WG
Sbjct: 351 GAEMQINEYGLVAHTLRVIMEKGLYKSTWG 380
>gi|119874637|gb|ABM05795.1| dyskerin [Sabella pavonina]
Length = 229
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 158/229 (68%), Positives = 196/229 (85%)
Query: 154 RLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIY 213
RLVKSQQ AGKEYVC+ RLH AKV + +E LTGA+FQ PPLISAVKRQL IRTIY
Sbjct: 1 RLVKSQQSAGKEYVCIFRLHSAPESHAKVLQTIEMLTGALFQMPPLISAVKRQLXIRTIY 60
Query: 214 ESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNM 273
ESKLLE+ +R++ + W+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSGI E D +
Sbjct: 61 ESKLLEFHKERNMGILWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGIQSEKDGL 120
Query: 274 VTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGL 333
+TMHDV+DAQWL DN +DE+YLRRVI PLE LL S+KR+++KD+ VNA+CYGAK+M+PG+
Sbjct: 121 MTMHDVLDAQWLLDNRKDESYLRRVIKPLEALLVSHKRIILKDSAVNAVCYGAKIMLPGV 180
Query: 334 LRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
LR+++ IEV +E+V++TTKGEAVAL +A+MTT V+ATCDHG VA+IKRV
Sbjct: 181 LRYDDGIEVNDEIVIVTTKGEAVALALAQMTTPVIATCDHGQVAKIKRV 229
>gi|119593069|gb|EAW72663.1| dyskeratosis congenita 1, dyskerin, isoform CRA_c [Homo sapiens]
Length = 311
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 156/253 (61%), Positives = 202/253 (79%), Gaps = 1/253 (0%)
Query: 217 LLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTM 276
++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTM
Sbjct: 1 MIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 60
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF 336
HDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+
Sbjct: 61 HDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRY 120
Query: 337 ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG 396
E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLG
Sbjct: 121 EDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLG 180
Query: 397 PRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKET 455
P+AS KK +I +G LDKHGK + TP W + V V + A Q VAE
Sbjct: 181 PKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYSESAKKEVVAEVVKAPQVVAEAAK 240
Query: 456 AGVKKRKLDASGD 468
+KR+ ++ D
Sbjct: 241 TAKRKRESESESD 253
>gi|119874645|gb|ABM05799.1| dyskerin [Thermobia domestica]
Length = 215
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 147/215 (68%), Positives = 184/215 (85%)
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ +LH V +V +AL L GA+FQRPPLISAVKRQLR+RT+YE KL EYD +H+
Sbjct: 1 CIFKLHSGVESEQQVIQALNRLRGALFQRPPLISAVKRQLRVRTVYEIKLNEYDDVKHMG 60
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+FW+SCEAGTYVRT+CVHLGLILGVGG M ELRRVRSGI E + MVTMHD++DAQWLYD
Sbjct: 61 IFWVSCEAGTYVRTICVHLGLILGVGGQMLELRRVRSGIQSEKEGMVTMHDILDAQWLYD 120
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N++DE+YLRRVI PLE LL S+KR+++KD+ VNA+CYGAK+M+PG+LR+E+ IE+ +E+V
Sbjct: 121 NHKDESYLRRVIRPLEGLLISHKRIIMKDSAVNAVCYGAKIMLPGVLRYEDGIELNDEIV 180
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
++TTKGEAV+L IA MTTA MA+CDHGVVA+IKRV
Sbjct: 181 IVTTKGEAVSLAIALMTTATMASCDHGVVAKIKRV 215
>gi|119874613|gb|ABM05783.1| dyskerin [Strigamia maritima]
Length = 223
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 147/223 (65%), Positives = 187/223 (83%)
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
Q AGKEYV + LH ++ K+ + LE+LTGAVFQRPPLISAVKRQLRIRTIYE+K+LE
Sbjct: 1 QSAGKEYVTIFALHSPFDNLKKIHQTLESLTGAVFQRPPLISAVKRQLRIRTIYEAKMLE 60
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
YD ++ L + W+SCEAGTYVRT+CVHLGL+LGVGG M ELRRVRSGI E MVTMHDV
Sbjct: 61 YDKEKGLGIIWMSCEAGTYVRTLCVHLGLMLGVGGQMAELRRVRSGIQDEKSGMVTMHDV 120
Query: 280 MDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEND 339
+DAQW Y++++DE YLRRVI PLEVLLTS+KR+++KD+ VNA+CYGAK+ PG+LRFE+
Sbjct: 121 LDAQWRYEHHQDEDYLRRVIRPLEVLLTSHKRIIMKDSAVNALCYGAKIYHPGILRFEDG 180
Query: 340 IEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
IE+ +++V++TTKGEA+ L A MTTA +A+CDHG+V ++KRV
Sbjct: 181 IELNQDIVVVTTKGEAICLATALMTTATIASCDHGIVTKLKRV 223
>gi|119593067|gb|EAW72661.1| dyskeratosis congenita 1, dyskerin, isoform CRA_a [Homo sapiens]
Length = 321
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 147/214 (68%), Positives = 188/214 (87%)
Query: 217 LLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTM 276
++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTM
Sbjct: 1 MIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTM 60
Query: 277 HDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRF 336
HDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+
Sbjct: 61 HDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRY 120
Query: 337 ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG 396
E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLG
Sbjct: 121 EDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLG 180
Query: 397 PRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
P+AS KK +I +G LDKHGK + TP W + V
Sbjct: 181 PKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYV 214
>gi|429964508|gb|ELA46506.1| tRNA pseudouridine synthase B [Vavraia culicis 'floridensis']
Length = 428
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/322 (48%), Positives = 223/322 (69%), Gaps = 4/322 (1%)
Query: 67 ILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL 126
+LL + D++ V+T +T G P KR + +Y++YG+I LDKP NPSSHEVV WIK IL
Sbjct: 44 VLLYDIDKMIVKTSCFTTQGRGSYPEKRKMEEYLKYGVIYLDKPRNPSSHEVVTWIKNIL 103
Query: 127 RVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARAL 186
RVEKTGH GTLDPKV+G L V ++R TRL K +Q AGKEYVC+ R+ V + K AL
Sbjct: 104 RVEKTGHGGTLDPKVSGVLTVYLNRGTRLSKIEQNAGKEYVCIIRIDGDVNE-EKFRDAL 162
Query: 187 EALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD--VDRHLVVFWISCEAGTYVRTMCV 244
G + QRPPLISAVKR +R+R++Y ++ LE + +F +SCEAGTY+R +C
Sbjct: 163 RFFEGRLIQRPPLISAVKRNVRMRSVYRNEFLELRKVESAYYGLFKVSCEAGTYIRVLCE 222
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
H+GL LG+ M ELRR+RSG + E + TMHDV+D + + DE Y+RRV+ P+E
Sbjct: 223 HIGLYLGMKAEMLELRRIRSGSIRE-EQCFTMHDVLDCHHILEKNSDERYIRRVVHPIEY 281
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
L +YKR++VKD+ V+A+C GAKL + G++RF+ +I +GE+VV++TTKGEA+ L ++
Sbjct: 282 SLRNYKRIMVKDSCVDALCSGAKLSLNGVIRFDRNINIGEKVVVITTKGEAIVLVETLVS 341
Query: 365 TAVMATCDHGVVARIKRVVMDR 386
M ++G++AR RV+M++
Sbjct: 342 GTEMQINEYGLIARTLRVIMEK 363
>gi|119874611|gb|ABM05782.1| dyskerin [Lithobius forficatus]
Length = 215
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/214 (64%), Positives = 183/214 (85%)
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH V DV KV LE+L GA+FQRPPLISAVKRQLR+R+IY+SKLLEYD R++ +
Sbjct: 2 IFKLHSAVDDVKKVVHVLESLQGALFQRPPLISAVKRQLRVRSIYQSKLLEYDKSRNMGI 61
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
FW+ CEAGTYVRT+CVH+GL+LGVGG MQELRRVRSG+ E + + TMHD++DAQW+Y+N
Sbjct: 62 FWVDCEAGTYVRTLCVHIGLMLGVGGQMQELRRVRSGVQSEKEELATMHDLLDAQWVYEN 121
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE YLRRVI PLE LL ++KR+++KD+ VNA+CYGAK+M+PG+LR+E+ IE+ +E+V+
Sbjct: 122 NKDETYLRRVIKPLERLLVTHKRIIMKDSAVNAVCYGAKVMLPGVLRYEDGIEINQEIVI 181
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
+T KGEA+A+GIA MTT+ MATC+HGVV ++KRV
Sbjct: 182 ITAKGEAIAIGIALMTTSTMATCNHGVVXKLKRV 215
>gi|125549421|gb|EAY95243.1| hypothetical protein OsI_17062 [Oryza sativa Indica Group]
Length = 288
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 144/179 (80%), Positives = 155/179 (86%), Gaps = 9/179 (5%)
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
+ LD+P VVAWIKR+LRV KTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAGK
Sbjct: 91 VRLDRP------WVVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGK 144
Query: 165 EYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDR 224
EYVCVAR H VPD A RA EALTGA+FQR PLISAVKRQLR+RTIYESKLLE+D +R
Sbjct: 145 EYVCVARFHAAVPDTA---RAFEALTGAMFQRLPLISAVKRQLRVRTIYESKLLEHDAER 201
Query: 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
HL VFWISCEAGTYVRT+CVHLGL+LGVG HMQEL RVRSGI GE DNMVTMHDVMDA+
Sbjct: 202 HLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTMHDVMDAR 260
>gi|240277318|gb|EER40827.1| centromere/microtubule binding protein cbf5 [Ajellomyces capsulatus
H143]
Length = 201
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/180 (78%), Positives = 160/180 (88%), Gaps = 1/180 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ TP+I TS+WP+LLKNYD+L VRTGH+TP+P G +PLKR L YI G+INL
Sbjct: 11 DYAIKPEAVTPAIPTSEWPLLLKNYDKLLVRTGHFTPIPAGCTPLKRDLKSYISSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ ARALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDKIPGGEAQFARALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
>gi|323509137|dbj|BAJ77461.1| cgd3_3850 [Cryptosporidium parvum]
Length = 219
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/186 (73%), Positives = 164/186 (88%)
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
MCVH+GL+LGVG HMQELRRVRSG L ENDNMVTMHD++DAQ++ DNYRDE+YLRR+I P
Sbjct: 1 MCVHMGLLLGVGAHMQELRRVRSGCLSENDNMVTMHDILDAQYMLDNYRDESYLRRIISP 60
Query: 302 LEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
LE+LLT R+VVKD+ VNAICYGAKLMIPG+LRF+N I+VG EVV+MTTKGEA+A+G+A
Sbjct: 61 LELLLTDLPRIVVKDSCVNAICYGAKLMIPGVLRFDNGIDVGTEVVMMTTKGEAIAIGVA 120
Query: 362 EMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKT 421
+MTTAV+A+ DHGVVA IKRV+M+RDTY +WG GPRAS KKKLI GKLDKHGK NE+T
Sbjct: 121 QMTTAVIASVDHGVVAIIKRVIMERDTYDMRWGHGPRASEKKKLILGGKLDKHGKPNEQT 180
Query: 422 PQEWAR 427
P+ W +
Sbjct: 181 PESWLK 186
>gi|323332315|gb|EGA73724.1| Cbf5p [Saccharomyces cerevisiae AWRI796]
Length = 291
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 131/192 (68%), Positives = 166/192 (86%)
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+YDN RDE+YLR +
Sbjct: 1 MRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSI 60
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+VL+TTKGEA+A+
Sbjct: 61 IQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAV 120
Query: 359 GIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLN 418
IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++ A+GKLDK+G++N
Sbjct: 121 AIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMKADGKLDKYGRVN 180
Query: 419 EKTPQEWARNVV 430
E TP++W + V
Sbjct: 181 ENTPEQWKKEYV 192
>gi|116754990|ref|YP_844108.1| putative rRNA pseudouridine synthase [Methanosaeta thermophila PT]
gi|116666441|gb|ABK15468.1| tRNA pseudouridine synthase B [Methanosaeta thermophila PT]
Length = 321
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 205/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +RPL +++R G INLDKP+ P+SHEVVAW+KRIL +EK GHSGTLDP+VTG L V
Sbjct: 12 GCFPDRRPLQEHLRLGAINLDKPSGPTSHEVVAWVKRILGLEKAGHSGTLDPRVTGILPV 71
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
ATR+V+ AGKEYVC+ R H++VP K+ E +G ++QRPPL S+V R L
Sbjct: 72 LTGDATRVVEFLLTAGKEYVCLMRTHEQVPR-KKILEVCEEFSGEIYQRPPLKSSVARNL 130
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R IY +LE + R V+ + CEAGTY+R +C +GL LG G +M+ELRR ++G
Sbjct: 131 RTRKIYYIDVLEIEGQR--VLMKVGCEAGTYIRKLCYDMGLALGCGANMEELRRTKAGPF 188
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+H++ DA ++ DE+ LRR ++P+E L LV+ D V+AIC+GA
Sbjct: 189 AEDETLVTLHNLKDAYEIWRESGDESALRRAVLPVERALRHLPGLVISDNAVDAICHGAP 248
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PGLL E DI G+ VV+ T KGEAVA+G A++++ M G+VA +RV+MD
Sbjct: 249 LAAPGLLSLETDINKGDFVVIYTLKGEAVAIGRAKLSSDEMMVAKSGIVASTERVIMDPG 308
Query: 388 TYPRKW 393
YPR+W
Sbjct: 309 VYPRRW 314
>gi|386001159|ref|YP_005919458.1| putative tRNA pseudouridine synthase B [Methanosaeta harundinacea
6Ac]
gi|357209215|gb|AET63835.1| putative tRNA pseudouridine synthase B [Methanosaeta harundinacea
6Ac]
Length = 332
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 155/306 (50%), Positives = 204/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G SP RPL +IR G INLDKP P+SHEVVAW+KRIL +E GHSGTLDPKVTG L
Sbjct: 26 GVSPEGRPLDQHIRLGCINLDKPPGPTSHEVVAWVKRILEIETAGHSGTLDPKVTGILPT 85
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ +TR+V++ AGKEYVC+ RLH +P +V G ++QRPPL S+VKR L
Sbjct: 86 MLGDSTRVVETLLSAGKEYVCLMRLHATLPR-KRVMEVCSEFAGVIYQRPPLKSSVKRAL 144
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R IY ++LE + R V+F + CEAGTY+R +C +GL LG G HM+ELRR RSG
Sbjct: 145 RTREIYYLEVLEIEGPR--VLFLVGCEAGTYIRKLCHDIGLALGSGAHMEELRRTRSGPF 202
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+H++ DA+ ++ DE LRR ++P+E L+ LV+ D V+AIC+GA
Sbjct: 203 REDETLVTLHELQDAKVIWRETGDETPLRRAVLPVERALSHMPTLVISDGAVDAICHGAP 262
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PGLLR E+ IE GE+VV+ T KGEAVA+ +A M + M G+VA+ RVVM
Sbjct: 263 LAAPGLLRLESGIEEGEKVVIYTLKGEAVAVAVAAMGSEDMMKSATGIVAKTSRVVMAPG 322
Query: 388 TYPRKW 393
TYP+ W
Sbjct: 323 TYPKMW 328
>gi|119719378|ref|YP_919873.1| putative rRNA pseudouridine synthase [Thermofilum pendens Hrk 5]
gi|119524498|gb|ABL77870.1| putative rRNA pseudouridine synthase [Thermofilum pendens Hrk 5]
Length = 338
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/319 (45%), Positives = 213/319 (66%), Gaps = 3/319 (0%)
Query: 75 LNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHS 134
+ VR+ T G+ P +RP ++Y +INLDKP PSSHEVVAW++++L +E+ H+
Sbjct: 14 IYVRSEDETDFSYGWLPEERPPEVLLKYSVINLDKPVGPSSHEVVAWLRKLLGIERIAHA 73
Query: 135 GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVF 194
GTLDPKV+G L + ++ A R++ KEYVCV RLH V D ++ R + G ++
Sbjct: 74 GTLDPKVSGVLPITLNNAVRVLPVLLKEDKEYVCVMRLHGDV-DPERLERVVSMFKGRIY 132
Query: 195 QRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGG 254
QRPPL SAVKR++RIR IY+ +LLE++ L+ W CEAGTY+R +C +G ILGVG
Sbjct: 133 QRPPLRSAVKREVRIRQIYDIRLLEFNERTALLHVW--CEAGTYMRKLCHDIGEILGVGA 190
Query: 255 HMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVV 314
HMQELRR+RSG L E+ N TMHDV+DA +++ + +LR+V +P+E + ++ +
Sbjct: 191 HMQELRRIRSGSLYEDRNCSTMHDVVDAYYIWKERGIDHFLRQVFLPVEAAIQHLPKVWI 250
Query: 315 KDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHG 374
+D+ V+A+C+GA L +PG+++ E I+V V ++T KGE VA+G A+MTT M T G
Sbjct: 251 RDSAVDAVCHGAPLAVPGIVKLEGGIKVNSTVAILTLKGELVAIGKAQMTTEKMLTESSG 310
Query: 375 VVARIKRVVMDRDTYPRKW 393
+ + + VVMD TYPRKW
Sbjct: 311 IAVKTEHVVMDPGTYPRKW 329
>gi|119874641|gb|ABM05797.1| dyskerin [Saccoglossus bromophenolosus]
Length = 183
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/183 (73%), Positives = 159/183 (86%)
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH + + AK+AR +E LTGAVFQRPPLISAVKRQLR+RTIYESKLLEYD +RHL
Sbjct: 1 CVVRLHSAIENEAKLARVIETLTGAVFQRPPLISAVKRQLRVRTIYESKLLEYDEERHLG 60
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
V WISCEAGTY+RT+CVH+GL+LGVGG M ELRRVRSGI E+DNMVTMHDVMDA+W YD
Sbjct: 61 VVWISCEAGTYIRTLCVHMGLLLGVGGQMAELRRVRSGIQSESDNMVTMHDVMDARWQYD 120
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N +DE YLRRVI PLE LL S+KR+V+KD+ VNAICYGAK+M+PG+LRFE+ IEV EVV
Sbjct: 121 NNKDETYLRRVIKPLEALLVSHKRIVLKDSAVNAICYGAKIMLPGVLRFEDGIEVNSEVV 180
Query: 348 LMT 350
+++
Sbjct: 181 VLS 183
>gi|222629409|gb|EEE61541.1| hypothetical protein OsJ_15862 [Oryza sativa Japonica Group]
Length = 347
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 140/166 (84%), Positives = 149/166 (89%), Gaps = 5/166 (3%)
Query: 118 VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP 177
VVAWIKR+LRV KTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAGKEYVCVAR H
Sbjct: 159 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFH---- 214
Query: 178 DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
A ARALEALTGA+FQR PLISAVKRQLR+RTIYESKLLE+D +RHL VFWISCEAGT
Sbjct: 215 -AADTARALEALTGAMFQRLPLISAVKRQLRVRTIYESKLLEHDAERHLAVFWISCEAGT 273
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
YVRT+CVHLGL+LGVG HMQEL RVRSGI GE DNMVTMHDVMDA+
Sbjct: 274 YVRTLCVHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTMHDVMDAR 319
>gi|357607596|gb|EHJ65601.1| hypothetical protein KGM_12643 [Danaus plexippus]
Length = 282
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/229 (60%), Positives = 175/229 (76%), Gaps = 9/229 (3%)
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
MCVHLGL+LGVGG M ELRRVRSGI GE + MVTMHD++DAQW Y+N++DE YLRRVI P
Sbjct: 1 MCVHLGLMLGVGGQMIELRRVRSGIQGEKEGMVTMHDILDAQWAYENHKDETYLRRVIKP 60
Query: 302 LEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
LE LL ++KR+ +KD+ VNA+CYGAK+++PG+LR+E+ IEV +E+V++TTKGEAVAL IA
Sbjct: 61 LEGLLVAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVALAIA 120
Query: 362 EMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKT 421
MTT+ MA+CDHGV A++KRV+M+RDTYPRKWGLGP+AS KK LI +GKLDK GK NE T
Sbjct: 121 LMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKMLIQQGKLDKFGKPNENT 180
Query: 422 PQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSP 470
P EW +S V A + +E AG K+ A+ D+P
Sbjct: 181 PSEWL---------NSYVDYKAKKDTENGDAQEDAGRKRTASTANADNP 220
>gi|284162947|ref|YP_003401570.1| rRNA pseudouridine synthase [Archaeoglobus profundus DSM 5631]
gi|284012944|gb|ADB58897.1| rRNA pseudouridine synthase [Archaeoglobus profundus DSM 5631]
Length = 333
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/308 (47%), Positives = 207/308 (67%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P KRP+ DYI+ G + +DKP PSSHEVV W++RIL VEKTGH+GTLDP+VTG L +
Sbjct: 30 GCNPFKRPMEDYIKKGFVCIDKPMGPSSHEVVVWVRRILEVEKTGHTGTLDPRVTGVLPI 89
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKV--PDVAKVARALEALTGAVFQRPPLISAVKR 205
I++AT+LV QG+ KEYVC+ RLH V D+ +V + E G ++QRPPL SAVK+
Sbjct: 90 MIEQATKLVHILQGSEKEYVCLMRLHGDVRREDIVRVMKMFE---GKIYQRPPLKSAVKK 146
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
+LRIR + + ++LE +D V+F ++ EAGTY+R +C +G +LG G HMQELRR R+G
Sbjct: 147 RLRIREVKKIEILE--IDGRDVLFKVTTEAGTYIRKLCTDIGEVLGCGAHMQELRRTRTG 204
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
I E D T+ D++DA + +E YLR++I P+E+ +T ++++KDT V+AIC+G
Sbjct: 205 IFTE-DLCYTLQDLLDAYVFWKEEGEEKYLRQIIKPMELAVTDIPKVIIKDTAVDAICHG 263
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L G+ E ++ G V + T KGE VALG+A M + + GVV + RV+M+
Sbjct: 264 ADLTARGVCYIERTVKKGRRVAIFTLKGELVALGVATMDAEEILRTNRGVVVDVTRVIME 323
Query: 386 RDTYPRKW 393
R YPR W
Sbjct: 324 RGVYPRAW 331
>gi|227827978|ref|YP_002829758.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
M.14.25]
gi|229579607|ref|YP_002838006.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
Y.G.57.14]
gi|229581728|ref|YP_002840127.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
Y.N.15.51]
gi|229585245|ref|YP_002843747.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
M.16.27]
gi|227459774|gb|ACP38460.1| rRNA pseudouridine synthase [Sulfolobus islandicus M.14.25]
gi|228010322|gb|ACP46084.1| rRNA pseudouridine synthase [Sulfolobus islandicus Y.G.57.14]
gi|228012444|gb|ACP48205.1| rRNA pseudouridine synthase [Sulfolobus islandicus Y.N.15.51]
gi|228020295|gb|ACP55702.1| rRNA pseudouridine synthase [Sulfolobus islandicus M.16.27]
Length = 339
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 211/306 (68%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
GY P KRP+ +I+ IINLDKP P+SHEV WIK++L V K GH GTL+PKVTG L +
Sbjct: 33 GYYPEKRPIDVHIKNSIINLDKPPGPTSHEVAYWIKKMLNVNKAGHGGTLEPKVTGVLPI 92
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I+ AT+++ GKEYVCV ++H + D ++ + +++ G ++QRPP+ S+VKR+L
Sbjct: 93 GIENATKIMNYISKGGKEYVCVMQVHCEY-DKEELTKIIKSFEGEIYQRPPVRSSVKRRL 151
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+R+IY+ ++L D+D+ LV+F +SC++GTY+R +C +G+I G G HM+ELRR RSGI
Sbjct: 152 RVRSIYDIEIL--DMDKKLVLFRVSCDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIF 209
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E+ N+V +HD+ +A +LY N +DE LRRV+MP+E +L+++D+ VNA+ YGA+
Sbjct: 210 TESTNLVKLHDLSEAIYLYKNCKDETELRRVLMPMEYATCEMPKLIIEDSAVNALAYGAQ 269
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG++ ++N + + V ++T KGE VA G A + + + G+V + RV M RD
Sbjct: 270 LAVPGIVAYQN-FKRNDTVAVLTLKGELVATGNALIDSKELENAKKGIVVNLSRVFMQRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 IYPKAW 334
>gi|255564868|ref|XP_002523428.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
gi|223537378|gb|EEF39007.1| centromere/microtubule binding protein cbf5, putative [Ricinus
communis]
Length = 432
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 161/221 (72%), Positives = 178/221 (80%), Gaps = 12/221 (5%)
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE YLRRVIMPLEVLLTSYKRLVVKD+ VNAICYGAKLMIPGLLRFEND+EVGEEVVLMT
Sbjct: 110 DETYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEEVVLMT 169
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGK 410
TKGEAVALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYPRKWGLGP+ASMKKKLIAEGK
Sbjct: 170 TKGEAVALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAEGK 229
Query: 411 LDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKK--------- 460
LDKHGK NE TPQEW RN+V LP GGD++VAS AAA E + KETA +KK
Sbjct: 230 LDKHGKPNENTPQEWTRNLVALPTGGDAIVASAAAAKESAMGNKETAAIKKVTGEVEEGK 289
Query: 461 --RKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKED 499
+K S D + + +VEKE+ ++VKKVKE+
Sbjct: 290 EKKKKRKSKDESTESPAAEAPAKKAKVEKEDAIEVKKVKEE 330
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/93 (88%), Positives = 90/93 (96%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKPQSFTP DTS+WPILLKNYDRLNVRTGHYTPLP+G+SPLKRPL +YIRYG++NLDK
Sbjct: 17 MIKPQSFTPPNDTSKWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLAEYIRYGVMNLDK 76
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 142
PANPSSHEVVAWIKRILRVEKTGHSGTL+PKVT
Sbjct: 77 PANPSSHEVVAWIKRILRVEKTGHSGTLNPKVT 109
>gi|119874639|gb|ABM05796.1| dyskerin [Saccoglossus sp. SJB-2006]
Length = 183
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 131/183 (71%), Positives = 160/183 (87%)
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH + + AK+AR +E LTGAVFQRPPLISAVKRQLR+RTIYESKLLEYD +RHL
Sbjct: 1 CVVRLHSAIENEAKLARVIETLTGAVFQRPPLISAVKRQLRVRTIYESKLLEYDEERHLG 60
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
V WISCEAGTY+RT+CVH+GL+LGVGG M ELRRVRSGI E+DNMVTMHDVMDA+W +D
Sbjct: 61 VVWISCEAGTYIRTLCVHMGLLLGVGGQMAELRRVRSGIQSESDNMVTMHDVMDARWQHD 120
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
+ +DE+YLRRV+ PLE LL S+KR+V+KD+ VNAICYGAK+M+PG+LRFE+ IE+ EVV
Sbjct: 121 HNKDESYLRRVVKPLEALLVSHKRIVLKDSAVNAICYGAKIMLPGVLRFEDGIEINSEVV 180
Query: 348 LMT 350
+++
Sbjct: 181 VLS 183
>gi|297603219|ref|NP_001053623.2| Os04g0576300 [Oryza sativa Japonica Group]
gi|255675709|dbj|BAF15537.2| Os04g0576300, partial [Oryza sativa Japonica Group]
Length = 198
Score = 290 bits (743), Expect = 1e-75, Method: Composition-based stats.
Identities = 140/166 (84%), Positives = 149/166 (89%), Gaps = 5/166 (3%)
Query: 118 VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP 177
VVAWIKR+LRV KTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAGKEYVCVAR H
Sbjct: 38 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFH---- 93
Query: 178 DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
A ARALEALTGA+FQR PLISAVKRQLR+RTIYESKLLE+D +RHL VFWISCEAGT
Sbjct: 94 -AADTARALEALTGAMFQRLPLISAVKRQLRVRTIYESKLLEHDAERHLAVFWISCEAGT 152
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
YVRT+CVHLGL+LGVG HMQEL RVRSGI GE DNMVTMHDVMDA+
Sbjct: 153 YVRTLCVHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTMHDVMDAR 198
>gi|312137105|ref|YP_004004442.1| tRNA pseudouridine synthase b [Methanothermus fervidus DSM 2088]
gi|311224824|gb|ADP77680.1| tRNA pseudouridine synthase B [Methanothermus fervidus DSM 2088]
Length = 329
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/306 (48%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G SP RP+ +YI G++NLDKPA P+SHEV AW+++IL V+K GH GTLDPKVTG L +
Sbjct: 17 GCSPEDRPIEEYIAKGVVNLDKPAGPTSHEVAAWVRKILGVKKVGHGGTLDPKVTGVLPI 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I++ATR++ A KEYVC+ RLH KV D ++ + LE G +FQ PPL SAVKR+L
Sbjct: 77 GIEKATRIMPLLLKAKKEYVCLMRLHKKV-DEEEIRKILEEFQGKIFQTPPLRSAVKREL 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+R IY KLLE ++ V+F I CEAGTY+R C +G LGVG HM ELRR G
Sbjct: 136 RVRRIYYVKLLE--IEGKDVLFRIGCEAGTYIRKYCYDVGEALGVGAHMAELRRTMVGPF 193
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E+D +VT+HD+ DA Y DE+ LR+VI+P+E + +V++DT V+AIC+G+
Sbjct: 194 KEDDTLVTLHDLTDAYHYYIEDGDESLLRKVILPMEKAVEHLPEIVIRDTAVDAICHGSY 253
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG++ ++I+ G+ V + T KGE VA+G A M++ + G+V I +V M+R
Sbjct: 254 LAAPGVVGLSDNIKRGDIVAIKTLKGELVAVGTATMSSQEILLSSKGIVVNINKVFMERG 313
Query: 388 TYPRKW 393
YP+ W
Sbjct: 314 IYPQVW 319
>gi|294495990|ref|YP_003542483.1| tRNA pseudouridine synthase B [Methanohalophilus mahii DSM 5219]
gi|292666989|gb|ADE36838.1| tRNA pseudouridine synthase B [Methanohalophilus mahii DSM 5219]
Length = 342
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 210/306 (68%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KRPL Y+R G++NLDKPA P+SHEV AW++ +L + + GHSG+LDP+VTG L +
Sbjct: 33 GCPPHKRPLSFYMRMGVVNLDKPAGPTSHEVTAWVRDMLELPRAGHSGSLDPRVTGVLPI 92
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ +AT+ V + + + KEY+C+ RLH+ VP+ +V + + TG ++Q PP++SAVKR +
Sbjct: 93 MLGKATKAVSALRLSAKEYICLMRLHENVPE-ERVRKVCDEFTGPIYQTPPVVSAVKRAV 151
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IY +LE V+ +LV+F + CEAGTY+R +C +GL++G G HMQ+LRRV +G
Sbjct: 152 RIRNIYSLDVLE--VEDNLVLFRVRCEAGTYIRKLCHDIGLVVGCGAHMQQLRRVGTGPF 209
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E+ ++VT+HD+ DA + DE +LRR+I P+E L + + ++D+ V+AIC+GA
Sbjct: 210 DES-SLVTLHDLKDAFVFWQENGDEEHLRRIIRPMEEALVNLPHITIRDSAVSAICHGAA 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG++ F++DI+ +V + + KGE VAL A M ++ + G+ A +RV+M+ D
Sbjct: 269 LTVPGIVGFDSDIQKKGDVAVFSLKGEIVALAKASMDSSEILNLSSGIAAITERVIMNDD 328
Query: 388 TYPRKW 393
YP +W
Sbjct: 329 VYPSRW 334
>gi|73667634|ref|YP_303649.1| H/ACA RNA-protein complex component Cbf5p [Methanosarcina barkeri
str. Fusaro]
gi|121722343|sp|Q46GC3.1|TRUB_METBF RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|72394796|gb|AAZ69069.1| tRNA pseudouridine synthase B [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/322 (44%), Positives = 214/322 (66%), Gaps = 5/322 (1%)
Query: 73 DRLNVR-TGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKT 131
+R+ VR +G +T G P KRP+++YI G++N+DKP P+SHEV AW+K IL V
Sbjct: 12 ERILVRKSGAWTNPSYGSYPEKRPILEYIEKGVVNIDKPKGPTSHEVAAWVKAILGVSTA 71
Query: 132 GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTG 191
GH+G+LDPKVTG L + +AT+ V + + +GKEYVC+ +LH ++P V + E TG
Sbjct: 72 GHAGSLDPKVTGLLPTLLGKATKAVPALRLSGKEYVCLLKLHKEMPQ-KLVRKVCEEFTG 130
Query: 192 AVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILG 251
++Q PP+ SAVKR +RIRTIY ++LE ++ V+F + CEAGTY+R +C +GL LG
Sbjct: 131 PIYQMPPIKSAVKRVIRIRTIYYLEVLE--IEGSFVLFRVGCEAGTYIRKLCHDIGLALG 188
Query: 252 VGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKR 311
GGHMQELRR ++G E + +VT+ D+ DA L+ DE+ +RRVIMP+E ++ +
Sbjct: 189 CGGHMQELRRTKAGPFTE-ETLVTLQDLKDAYVLWKEDGDESEIRRVIMPMETAVSHLPK 247
Query: 312 LVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATC 371
++++D+ V+AIC GA L +PG+ + +++ GE + L T KGE VAL AEM+T +
Sbjct: 248 IILRDSAVDAICSGAALAVPGITSLDANLKKGELIALFTLKGELVALAKAEMSTEELLKA 307
Query: 372 DHGVVARIKRVVMDRDTYPRKW 393
G+ A R++M+ TYP+ W
Sbjct: 308 STGLAATSVRIMMEIGTYPKGW 329
>gi|288931536|ref|YP_003435596.1| rRNA pseudouridine synthase [Ferroglobus placidus DSM 10642]
gi|288893784|gb|ADC65321.1| rRNA pseudouridine synthase [Ferroglobus placidus DSM 10642]
Length = 335
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 143/306 (46%), Positives = 206/306 (67%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P RP+ +YIR G + +DKP P+SHEVV W+++IL VEKTGH+GTLDPKVTG L V
Sbjct: 20 GCYPYNRPIQEYIRKGFVLIDKPKGPTSHEVVVWVRKILEVEKTGHAGTLDPKVTGVLPV 79
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I++AT+LV+ QG+ KEYV + RLH V + ++ + E G ++QRPPL SAVK++L
Sbjct: 80 FIEQATKLVQFLQGSEKEYVALMRLHGDVSE-RELRKVFELFKGKIYQRPPLKSAVKKRL 138
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+R IY+ ++LE +D V+F + CEAGTYVR +C +G ILGVG HMQELRR+R+GI
Sbjct: 139 RVREIYDIEILE--IDGRDVLFRVVCEAGTYVRKLCTDIGEILGVGAHMQELRRIRTGIF 196
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + T+ D++DA + +E YLR +I P+E+ + + ++++KDT V+AIC+GA
Sbjct: 197 TE-EKCYTLQDLLDAYIFWKEEGEEEYLREIIQPMELAVANIPKIIIKDTAVDAICHGAS 255
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ E +++ GE V + T K E VA+G + + G+VA I+RV+M+R
Sbjct: 256 LTAKGVAYVEKNVKKGERVAIFTLKQELVAIGRSNYDAEDILKIRGGIVAEIERVIMERG 315
Query: 388 TYPRKW 393
TYP W
Sbjct: 316 TYPSYW 321
>gi|238620204|ref|YP_002915030.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
M.16.4]
gi|238381274|gb|ACR42362.1| rRNA pseudouridine synthase [Sulfolobus islandicus M.16.4]
Length = 338
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 210/306 (68%), Gaps = 5/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
GY P KRP+ +I+ IINLDKP P+SHEV WIK++L V K GH GTL PKVTG L +
Sbjct: 33 GYYPEKRPIDVHIKNSIINLDKPPGPTSHEVAYWIKKMLNVNKAGHGGTL-PKVTGVLPI 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I+ AT+++ GKEYVCV ++H + D ++ + +++ G ++QRPP+ S+VKR+L
Sbjct: 92 GIENATKIMNYISKGGKEYVCVMQVHCEY-DKEELTKIIKSFEGEIYQRPPVRSSVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+R+IY+ ++L D+D+ LV+F +SC++GTY+R +C +G+I G G HM+ELRR RSGI
Sbjct: 151 RVRSIYDIEIL--DMDKKLVLFRVSCDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E+ N+V +HD+ +A +LY N +DE LRRV+MP+E +L+++D+ VNA+ YGA+
Sbjct: 209 TESTNLVKLHDLSEAIYLYKNCKDETELRRVLMPMEYATCEMPKLIIEDSAVNALAYGAQ 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG++ ++N + + V ++T KGE VA G A + + + G+V + RV M RD
Sbjct: 269 LAVPGIVAYQN-FKRNDTVAVLTLKGELVATGNALIDSKELENAKKGIVVNLSRVFMQRD 327
Query: 388 TYPRKW 393
YP+ W
Sbjct: 328 IYPKAW 333
>gi|14591414|ref|NP_143494.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus horikoshii
OT3]
gi|3915184|sp|O59357.1|TRUB_PYRHO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|3258073|dbj|BAA30756.1| 334aa long hypothetical centromere/microtubule binding protein
[Pyrococcus horikoshii OT3]
Length = 334
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/306 (46%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P +RP+ +I+YG+INLDKP P+SHEVVAWIKRIL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPYERPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-NKIIDVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGRDVLFKVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E YLRR I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEKYLRRAIQPMEKAVEHLPKIWIKDSAVAAVAHGAN 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LTVPGIVKLNVGIKRGDLVAIMTLKDELVALGKAMMTSQEMMQRSKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>gi|14520738|ref|NP_126213.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus abyssi GE5]
gi|13959604|sp|Q9V1A5.1|TRUB_PYRAB RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|112490021|pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
gi|112490023|pdb|2AUS|A Chain A, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5
Complex
gi|5457954|emb|CAB49444.1| truB tRNA pseudouridine synthase II [Pyrococcus abyssi GE5]
gi|380741277|tpe|CCE69911.1| TPA: H/ACA RNA-protein complex component Cbf5p [Pyrococcus abyssi
GE5]
Length = 334
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/306 (46%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I+YG+INLDKP P+SHEVVAWIKRIL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDVPE-DKIRAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y+R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVEHLPKIWIKDSAVAAVAHGAN 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A M+T M G+ +++V M RD
Sbjct: 269 LTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>gi|308161234|gb|EFO63690.1| Centromere/microtubule binding protein CBF5 [Giardia lamblia P15]
Length = 313
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 147/313 (46%), Positives = 203/313 (64%), Gaps = 16/313 (5%)
Query: 163 GKEYVCVARLHD---------KVPDVAKVARALEALTGAVFQRPPL-ISAVKRQLRIRTI 212
GKEYVCV + D + A++ +AL L A Q PP AVKRQLR+R I
Sbjct: 2 GKEYVCVLQFKDLAALKDEDARKAFSARLQQALATLRCAQLQLPPKEGCAVKRQLRVREI 61
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
Y LLE++ + SC+AGTY+RT+CVH+GL++G +M ELRRVRSG L E N
Sbjct: 62 YTLDLLEFNFKTGQAILRASCQAGTYMRTLCVHIGLLMGYEAYMLELRRVRSGELTEKTN 121
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+HDV+D+ W + N DE+YLR+V+MPLE LL SYKR+ VKD+++NA+ YGA L I G
Sbjct: 122 LVTLHDVLDSFWCWKNLGDESYLRKVVMPLEYLLKSYKRIFVKDSSINALTYGAPLHIQG 181
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+LR++ I +G+ VVL++TKGEAVALG A M + G+V+++KRV+MDRD Y R+
Sbjct: 182 VLRYDPRISIGDTVVLVSTKGEAVALGTATMGAQDIMGVSRGIVSKVKRVIMDRDLYDRQ 241
Query: 393 WGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNV-----VLPPGGDSVVASLAAAAE 447
WGLGP A +KK+LI G+LDK+G +N+ TP+EW L G++ S A
Sbjct: 242 WGLGPTALLKKQLIKNGQLDKYGGINKDTPKEWVERFHSTEEFLKTAGNTCGNSTEGANT 301
Query: 448 QTVAEKETAGVKK 460
+ E++ G+KK
Sbjct: 302 EDAHERQR-GLKK 313
>gi|375083510|ref|ZP_09730530.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus litoralis
DSM 5473]
gi|374741837|gb|EHR78255.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus litoralis
DSM 5473]
Length = 335
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 205/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ ++++G+INLDKP P+SHEVVAW+K++L ++K GH GTLDPKVTG L V
Sbjct: 33 GFPPDKRPIEMHMQFGVINLDKPPGPTSHEVVAWVKKLLNLQKAGHGGTLDPKVTGVLPV 92
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 93 ALERATRVVQALLPAGKEYVALMHLHGDVPE-DKIRAVMKEFEGEIIQRPPLRSAVKRRL 151
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +++E ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 152 RTRKVYYIEIIE--IEGKDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 209
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++DA + + E Y R+ I P+E + ++ ++D+ V A+ +GA
Sbjct: 210 KEDETLVTLHDLIDAYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 269
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A+M T M T G+ +++V M RD
Sbjct: 270 LAVPGIVKLHKGIKPGDLVAIMTLKDELVALGKAKMNTQEMLTKTKGIAVDVEKVFMPRD 329
Query: 388 TYPRKW 393
YP+ W
Sbjct: 330 WYPKMW 335
>gi|337283743|ref|YP_004623217.1| rRNA pseudouridine synthase [Pyrococcus yayanosii CH1]
gi|334899677|gb|AEH23945.1| rRNA pseudouridine synthase, putative [Pyrococcus yayanosii CH1]
Length = 333
Score = 284 bits (727), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 200/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
GY P KRP+ ++++G+INLDKP P+SHEVVAWIKR+ +EK GH GTLDPKV+G L V
Sbjct: 31 GYPPEKRPMEMHMQFGVINLDKPPGPTSHEVVAWIKRLFNLEKAGHGGTLDPKVSGVLPV 90
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH VP+ K+ R ++ G + QRPPL SAVKR+L
Sbjct: 91 ALERATRVVQALLPAGKEYVALMHLHGDVPE-EKIYRVMKEFEGEIIQRPPLRSAVKRRL 149
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 150 RTRKVYYIEILE--IDGRDVLFRAGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 207
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT HD++D + E + RR I P+E + ++ +KD+ V A+ +GA
Sbjct: 208 KEDETLVTFHDLVDYYHFWKEDGIEEHFRRAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 267
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 268 LAVPGIVKLHAGIKRGDLVAIMTLKDELVALGKALMTSQEMLQKSRGIAVDVEKVFMPRD 327
Query: 388 TYPRKW 393
YP+ W
Sbjct: 328 WYPKMW 333
>gi|20093573|ref|NP_613420.1| H/ACA RNA-protein complex component Cbf5p [Methanopyrus kandleri
AV19]
gi|37089078|sp|Q8TZ08.1|TRUB_METKA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|19886426|gb|AAM01350.1| Pseudouridine synthase of the TruB family [Methanopyrus kandleri
AV19]
Length = 338
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/311 (46%), Positives = 206/311 (66%), Gaps = 10/311 (3%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +RP+ +YI G+INLDKPA P+SHEVVAW+K I + K GH GTLDPKVTG L +
Sbjct: 30 GCPPEERPIEEYIMKGVINLDKPAGPTSHEVVAWVKEIFGLSKAGHGGTLDPKVTGVLPI 89
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++AT+++++ AGKEYV + LH V D ++ R ++ G + QRPPL SAVKR++
Sbjct: 90 ALEKATKIIQTLLPAGKEYVTIMHLHGDV-DEEELERVVKEFEGTILQRPPLRSAVKRRV 148
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R + IY +LE +D V+ + C+AGTY+R +C +G LGVG HM ELRR R+G
Sbjct: 149 RPKKIYYIDILE--IDGRDVLMRVGCQAGTYIRKLCHDIGEALGVGAHMAELRRTRTGPF 206
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAY---LRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
E +N VT+HDV DA Y+ +++E + LR V+ P+E L R+ ++DT V+AIC+
Sbjct: 207 SE-ENAVTLHDVKDA---YEFWKEEGWEEPLRHVVRPMEEGLEHLPRIEIRDTAVDAICH 262
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
GA L PG++R E I+ G+ V + T KGEAVALG+A+ T M D G++ KRV+M
Sbjct: 263 GANLAAPGIVRVEKGIQPGDLVAIFTLKGEAVALGVAKATWKEMLHADRGIMVDTKRVLM 322
Query: 385 DRDTYPRKWGL 395
+ TYP+ WGL
Sbjct: 323 EPGTYPKAWGL 333
>gi|325958561|ref|YP_004290027.1| tRNA pseudouridine synthase B [Methanobacterium sp. AL-21]
gi|325329993|gb|ADZ09055.1| tRNA pseudouridine synthase B [Methanobacterium sp. AL-21]
Length = 320
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/309 (46%), Positives = 202/309 (65%), Gaps = 4/309 (1%)
Query: 86 PN-GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGN 144
PN G P RP+ ++I G++NLDKP P+SHEV AW+KRIL VEKTGH GTLDPKVTG
Sbjct: 14 PNYGCDPNNRPIEEHINTGVVNLDKPMGPTSHEVDAWVKRILDVEKTGHGGTLDPKVTGV 73
Query: 145 LIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
L + I+R+TR+++ G+ KEYVC+ RLH+ + + + L+ TG +FQ PP+ SAVK
Sbjct: 74 LPIGINRSTRVIQMLLGSPKEYVCLMRLHESISE-DSIRNILQEFTGKIFQTPPIKSAVK 132
Query: 205 RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRS 264
R+LR+RTIY+ +LE +D V+F I+CE GTY+R C +G LG+G HM ELRR +S
Sbjct: 133 RELRVRTIYDVNILE--IDDKDVLFRINCEGGTYIRKYCHDIGEALGIGAHMAELRRTKS 190
Query: 265 GILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
G E++ + T+ D+ DA + DE +R I+P+E +T ++VV+D+ V+AIC+
Sbjct: 191 GPFTEDETLKTLQDLTDAYHYLKHDGDEKPIRECILPMESAVTHLNQIVVRDSAVDAICH 250
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
GA L G+L DI+ GE V ++T KGE V G TT + D G++ IK+V M
Sbjct: 251 GADLATNGILELSPDIKSGETVRVLTQKGELVGAGETVETTEGILRSDKGIMVNIKKVFM 310
Query: 385 DRDTYPRKW 393
+TYP+ W
Sbjct: 311 LPETYPKMW 319
>gi|242398328|ref|YP_002993752.1| Probable tRNA pseudouridine synthase B [Thermococcus sibiricus MM
739]
gi|242264721|gb|ACS89403.1| Probable tRNA pseudouridine synthase B [Thermococcus sibiricus MM
739]
Length = 339
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 204/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ ++++GII+LDKP P+SHEVVAWIK++L ++K GH GTLDPKVTG L V
Sbjct: 37 GFPPEKRPIEMHMQFGIISLDKPPGPTSHEVVAWIKKLLNLQKAGHGGTLDPKVTGVLPV 96
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH +VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 97 ALERATRVVQALLPAGKEYVALMHLHGEVPE-DKIRVVMKEFEGEIIQRPPLRSAVKRRL 155
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 156 RTRKVYYIDVLE--IEGKDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 213
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++DA + + E Y RR I P+E + ++ ++D+ V AI +GA
Sbjct: 214 KEDETLVTLHDLIDAYYFWKEDGIEEYFRRAIQPMEKAVEHLPKVWIRDSAVAAITHGAD 273
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ + V +MT K E VALG A+M T M T G+ +++V M RD
Sbjct: 274 LAVPGIVKLHKGIKPDDLVAIMTLKDELVALGKAKMNTQEMLTKTKGIAVDVEKVFMPRD 333
Query: 388 TYPRKW 393
YP+ W
Sbjct: 334 WYPKMW 339
>gi|330508472|ref|YP_004384900.1| rRNA pseudouridine synthase [Methanosaeta concilii GP6]
gi|328929280|gb|AEB69082.1| rRNA pseudouridine synthase, putative [Methanosaeta concilii GP6]
Length = 308
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/300 (47%), Positives = 198/300 (66%), Gaps = 3/300 (1%)
Query: 99 YIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKS 158
++R G INLDK + P+SHEVVAW+KRIL VEK GHSGTLDPKVTG L V + ATR++ +
Sbjct: 2 HLRLGAINLDKTSGPTSHEVVAWVKRILEVEKAGHSGTLDPKVTGILPVLLGDATRVMDT 61
Query: 159 QQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLL 218
AGKEY+C+ +H VP ++ G + Q+PPL S+V ++LR RTIY ++L
Sbjct: 62 LLLAGKEYICLMHVHKPVPK-KQITDVCGQFVGPILQKPPLKSSVVKELRTRTIYYLEVL 120
Query: 219 EYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHD 278
E ++ V+ + CEAGTY+R +C +GL LG G +M+ELRR R+G E++ +VT+H
Sbjct: 121 E--IEGQHVLMRVGCEAGTYIRKLCYDIGLALGTGANMEELRRTRAGPFREDETLVTLHQ 178
Query: 279 VMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
++DA Y +E LRRVI+P+E L RLV+ D +V+AIC+GA L PGLL +
Sbjct: 179 LIDAHVKYMETGNENLLRRVILPVEAALVHLPRLVIADNSVDAICHGAPLAAPGLLSLQT 238
Query: 339 DIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPR 398
+I G+ VVL T KGEAVA+ AE+++ M G+VA +RV+M+ TYP+ W L R
Sbjct: 239 EINRGDGVVLFTLKGEAVAVAQAELSSEEMLASKSGIVAATERVIMEPGTYPKAWKLAER 298
>gi|149029848|gb|EDL84960.1| dyskeratosis congenita 1, dyskerin, isoform CRA_a [Rattus
norvegicus]
Length = 266
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/214 (63%), Positives = 171/214 (79%), Gaps = 1/214 (0%)
Query: 256 MQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVK 315
MQELRRVRSG++GE D+MVTMHDV+DAQ+LYD++RDE+YLRRV+ PLE LLTS+KRLV+K
Sbjct: 1 MQELRRVRSGVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMK 60
Query: 316 DTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGV 375
D+ VNAICYGAK+M+PGLLR+E+ IEV +EVV++TTKGEAV + IA MTTAV++TCDHGV
Sbjct: 61 DSAVNAICYGAKIMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHGV 120
Query: 376 VARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGG 435
VA+IKRV+M+RDTYPRKWGLGP+AS KK+LI +G LDKHG+ + TP W R+ V
Sbjct: 121 VAKIKRVIMERDTYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDYV-DYSD 179
Query: 436 DSVVASLAAAAEQTVAEKETAGVKKRKLDASGDS 469
S A+ A A + A + KRK D+ D+
Sbjct: 180 SSKKATAAEATPGPGVTADAASIVKRKRDSDSDA 213
>gi|282164918|ref|YP_003357303.1| probable tRNA pseudouridine synthase B [Methanocella paludicola
SANAE]
gi|282157232|dbj|BAI62320.1| probable tRNA pseudouridine synthase B [Methanocella paludicola
SANAE]
Length = 332
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 6/310 (1%)
Query: 86 PNGYS--PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG 143
P GY P R + + + G+INLDKP P+SHEV AW+K IL +++ GHSGTLDP VTG
Sbjct: 22 PKGYGKDPYTRSVAELLDKGVINLDKPYGPTSHEVTAWVKNILHIKRAGHSGTLDPHVTG 81
Query: 144 NLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
L + ATRLV++ +GKEYVCV RLH VP+ A+V L TG ++QRPPL+SAV
Sbjct: 82 VLPTMLGDATRLVRTLLLSGKEYVCVMRLHADVPE-ARVKAVLSEFTGVIYQRPPLVSAV 140
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 263
KRQLR RTIY + +E +D V+F + CEAGTY+R +C +G LGVG HM ELRR +
Sbjct: 141 KRQLRKRTIYYIEFME--MDGRDVLFRVGCEAGTYIRKLCHDIGEALGVGAHMYELRRTK 198
Query: 264 SGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAIC 323
SG E++ ++T+ D+ DA + Y DEA LR++I+P+E L + R+VVKD+ V+A+
Sbjct: 199 SGPFKEDETLITLQDLTDA-YFYFTQGDEAPLRKIILPMENALRNMPRIVVKDSAVDALA 257
Query: 324 YGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
GA L + G+ + + I+ G+ V + T GE V++G A+MTT + G RVV
Sbjct: 258 EGAPLYVQGICKVDTGIQKGDMVAVFTLIGEVVSMGTAKMTTEELMASKEGQAMDTVRVV 317
Query: 384 MDRDTYPRKW 393
M+ YP++W
Sbjct: 318 MEPGIYPKEW 327
>gi|315229889|ref|YP_004070325.1| tRNA pseudouridine 55 synthase [Thermococcus barophilus MP]
gi|315182917|gb|ADT83102.1| tRNA pseudouridine 55 synthase [Thermococcus barophilus MP]
Length = 334
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 202/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ ++++GIINLDKP P+SHEVVAWIKR+ ++K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHMQFGIINLDKPPGPTSHEVVAWIKRLFNLKKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIYKVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGKDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ ++D+ V A+ YGA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTYGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LAVPGIVKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLNKSKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKMW 334
>gi|18978157|ref|NP_579514.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus furiosus DSM
3638]
gi|397652567|ref|YP_006493148.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus furiosus
COM1]
gi|62901346|sp|Q7LWY0.1|TRUB_PYRFU RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|300508488|pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRU
gi|300508493|pdb|3LWP|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
5BRDU
gi|300508498|pdb|3LWQ|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
3MU
gi|300508503|pdb|3LWR|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
4SU
gi|300508508|pdb|3LWV|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING
2'- Deoxyuridine
gi|18893962|gb|AAL81909.1| centromere binding protein homolog/pseudouridine synthase
[Pyrococcus furiosus DSM 3638]
gi|393190158|gb|AFN04856.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus furiosus
COM1]
Length = 340
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ ++T+HD++D + + E Y R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>gi|116667872|pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS
FURIOSUS
gi|241913415|pdb|3HAX|A Chain A, Crystal Structure Of A Substrate-Bound Gar1-Minus HACA RNP
FROM Pyrococcus Furiosus
gi|241913420|pdb|3HAY|A Chain A, Crystal Structure Of A Substrate-Bound Full HACA RNP FROM
Pyrococcus Furiosus
Length = 346
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ ++T+HD++D + + E Y R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>gi|341582033|ref|YP_004762525.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus sp. 4557]
gi|340809691|gb|AEK72848.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus sp. 4557]
Length = 334
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 200/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ ++++GIINLDKP P+SHEVVAWIKR+ + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWIKRLFDLNKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDVPE-NKIRAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGKDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + + E Y R+ I P+E + ++ ++D+ V A+ YGA
Sbjct: 209 KEDETLVTLHDLIDYYHFWKDDGIEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTYGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ + +V M RD
Sbjct: 269 LAVPGIVKLNKGIKRGDLVAVMTLKDELVALGKATMTSGEMLQRSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>gi|332157871|ref|YP_004423150.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus sp. NA2]
gi|331033334|gb|AEC51146.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus sp. NA2]
Length = 339
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 201/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I+YG+INLDKP P+SHEVVAWIK+I +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKKIFNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ ++ + ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DRIVQVMKEFQGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGRDVLFRAGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E YLR+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYLRKAIQPMEKAVEHLPKIWIKDSAVAAVTHGAN 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LTVPGIAKLHAGIKRGDLVAIMTLKEELVALGKALMTSQEMLQRSKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>gi|124028184|ref|YP_001013504.1| H/ACA RNA-protein complex component Cbf5p [Hyperthermus butylicus
DSM 5456]
gi|123978878|gb|ABM81159.1| predicted pseudouridine synthase [Hyperthermus butylicus DSM 5456]
Length = 345
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 140/307 (45%), Positives = 202/307 (65%), Gaps = 5/307 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P RP+ +IR G+I LDKP P+SHEVVAWIKR+ + K GH GTLDPKVTG L V
Sbjct: 39 GTPPWARPIEKHIRMGVIPLDKPPGPTSHEVVAWIKRMFGLSKAGHGGTLDPKVTGVLPV 98
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ T+++ GKEY+CV +LH VP+ ++ RA+ G ++QRPPL S+VKR L
Sbjct: 99 ALEEGTKVIGLVVHTGKEYMCVMQLHRPVPE-EELRRAINMFVGEIYQRPPLRSSVKRSL 157
Query: 208 RIRTIYESKLLEYDVDRHLV-VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGI 266
R++ IYE +LLEY+ L+ VF EAGTY+R +C +GLILGVG HM+ELRR RSG
Sbjct: 158 RLKKIYEIELLEYNGRYALMRVF---SEAGTYMRKLCHDIGLILGVGAHMRELRRTRSGP 214
Query: 267 LGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGA 326
E + +V + ++ +A + + E LR+ I+P+E ++ ++VV+DT V+AI +GA
Sbjct: 215 FRERNGLVRLQELSEAIYRWKQEGKEDLLRKYILPIEYAVSHLPKIVVRDTAVDAIAHGA 274
Query: 327 KLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDR 386
L +PG+ R I+ G+ V L+T KGE VA+G+A+M++ +A G+ +I+RV+M
Sbjct: 275 NLAVPGIARLHEGIKRGDLVALLTLKGELVAIGVAQMSSEEIAKAKKGIAVKIRRVIMPP 334
Query: 387 DTYPRKW 393
YPR W
Sbjct: 335 GVYPRAW 341
>gi|315583491|pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing
Aca Trinucleotide
Length = 328
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 25 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 84
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 85 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRL 143
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 144 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 201
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ ++T+HD++D + + E Y R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 202 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 261
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 262 LAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRD 321
Query: 388 TYPRKW 393
YP+ W
Sbjct: 322 WYPKLW 327
>gi|241913454|pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
gi|241913459|pdb|3HJY|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine
Synthase Bound To A Substrate Rna
Length = 327
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 25 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 84
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 85 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRL 143
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 144 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 201
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ ++T+HD++D + + E Y R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 202 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 261
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 262 LAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRD 321
Query: 388 TYPRKW 393
YP+ W
Sbjct: 322 WYPKLW 327
>gi|57641444|ref|YP_183922.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus
kodakarensis KOD1]
gi|62901179|sp|Q5JJE8.1|TRUB_PYRKO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|57159768|dbj|BAD85698.1| tRNA pseudouridine synthase B [Thermococcus kodakarensis KOD1]
Length = 338
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 198/306 (64%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++GIINLDKP P+SHEVVAW+KRIL + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHIQFGIINLDKPPGPTSHEVVAWVKRILNLNKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH VP+ K+ + G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDVPE-DKILAVMREFQGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIDVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ ++D+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGVEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MTT M G+ + +V M RD
Sbjct: 269 LAVPGVVKLHKGIKKGDLVAIMTLKDELVALGKAMMTTGEMLQKSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>gi|390960764|ref|YP_006424598.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus sp. CL1]
gi|390519072|gb|AFL94804.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus sp. CL1]
Length = 334
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 200/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ ++++GIINLDKP P+SHEVVAWIKR+ + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWIKRLFNLNKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH +VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGEVPE-DKIYAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGKDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ ++D+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ + +V M RD
Sbjct: 269 LAVPGIVKVHKGIKKGDLVAVMTLKDELVALGKATMTSGEMLQRSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKMW 334
>gi|389852948|ref|YP_006355182.1| H/ACA RNA-protein complex component Cbf5p [Pyrococcus sp. ST04]
gi|388250254|gb|AFK23107.1| putative H/ACA RNA-protein complex component Cbf5p [Pyrococcus sp.
ST04]
Length = 334
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 202/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK++ +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPDKRPIELHIQFGVINLDKPPGPTSHEVVAWIKKLFNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIVQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LAVPGIVKLHAGIKRGDLVAIMTLKDELVALGKAIMTSQEMLQKSKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKMW 334
>gi|223477864|ref|YP_002582357.1| tRNA pseudouridine 55 synthase [Thermococcus sp. AM4]
gi|214033090|gb|EEB73918.1| tRNA pseudouridine 55 synthase [Thermococcus sp. AM4]
Length = 334
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 199/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ ++++GIINLDKP P+SHEVVAWIK++ + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHMQFGIINLDKPPGPTSHEVVAWIKKLFNLSKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDVPE-DKILAVMKEFQGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIDVLE--IDGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+VI P+E + ++ ++D+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYFRKVIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ + +V M RD
Sbjct: 269 LAVPGIVKLHKGIKKGDLVAIMTLKDELVALGKATMTSGEMLQRSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKMW 334
>gi|336477134|ref|YP_004616275.1| rRNA pseudouridine synthase [Methanosalsum zhilinae DSM 4017]
gi|335930515|gb|AEH61056.1| rRNA pseudouridine synthase [Methanosalsum zhilinae DSM 4017]
Length = 333
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/306 (47%), Positives = 202/306 (66%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G SP RP+ ++I G+INL KP P+SHEV AW+K IL ++K GHSG+LDP V G L +
Sbjct: 28 GCSPHMRPIDEHINRGVINLLKPKGPTSHEVTAWVKDILHLKKAGHSGSLDPVVDGLLPI 87
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ +AT+ +++ + +GKEYVC+ RLH VP+ K+ R G +FQ PPLISAVKR +
Sbjct: 88 MLGKATKTIRALRLSGKEYVCLMRLHSSVPE-KKIIRVCSEFEGQIFQIPPLISAVKRAV 146
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IY +++E + +LV+ I CEAGTY+R +C +G LG G HMQELRR ++G
Sbjct: 147 RIRRIYYLEIIE--MKDNLVLMRIGCEAGTYIRKLCHDIGEALGCGAHMQELRRTKTGPF 204
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+HDV DA + + DE+ LRRVI+P+E L +V++D+ V+AIC GA
Sbjct: 205 NE-DTAVTLHDVTDAYTFWKEHGDESELRRVILPMEEGLKHLPPVVIRDSAVDAICQGAS 263
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG++ ++ I+ + V + T KGEAVAL A MTT + D G+VA +RV++D
Sbjct: 264 LAVPGIVSLDSMIKKDDTVCIYTLKGEAVALSRAVMTTDEILEKDSGIVAVTERVIIDAG 323
Query: 388 TYPRKW 393
TYP W
Sbjct: 324 TYPSAW 329
>gi|288560155|ref|YP_003423641.1| H/ACA RNA-protein complex component Cbf5p [Methanobrevibacter
ruminantium M1]
gi|288542865|gb|ADC46749.1| H/ACA RNA-protein complex component Cbf5p [Methanobrevibacter
ruminantium M1]
Length = 320
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 140/307 (45%), Positives = 196/307 (63%), Gaps = 4/307 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +RP+ ++I GIINLDKP+ P+SHEV +W+KRIL KTGH GTLDPKVTG L +
Sbjct: 17 GCNPYERPIEEHIAKGIINLDKPSGPTSHEVDSWVKRILGCNKTGHGGTLDPKVTGVLPI 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
ID ATR+ + AGKEYVC+ LH ++P+ +V TG ++Q PP+ SAVKR+L
Sbjct: 77 GIDNATRVSQLLLPAGKEYVCLMHLHREIPE-DQVKGIFNEFTGKIYQTPPVKSAVKREL 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+R IY S + Y+++ V+F I CEAGTYVRT C +G LG G HM ELRR R G
Sbjct: 136 RVRNIYYSTI--YEIEGQDVLFRIGCEAGTYVRTYCHDIGEALGCGAHMAELRRTRVGPF 193
Query: 268 GE-NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGA 326
E N+++V +HD+ DA Y DE ++R+ I P+EV + ++ +KD+ V AIC+GA
Sbjct: 194 DERNNDLVNLHDLTDAYHFYLEDGDEEHIRKAIQPMEVASSHLPQIFIKDSAVEAICHGA 253
Query: 327 KLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDR 386
KL G+ + DI+ G V + + KGE VA G + +++ + D G+V +V MD
Sbjct: 254 KLGAGGICKLSKDIQKGNLVAIKSLKGELVAAGTSLLSSQEIMNADSGLVVDTNKVFMDT 313
Query: 387 DTYPRKW 393
YP+ W
Sbjct: 314 GIYPKGW 320
>gi|327401041|ref|YP_004341880.1| tRNA pseudouridine synthase B [Archaeoglobus veneficus SNP6]
gi|327316549|gb|AEA47165.1| tRNA pseudouridine synthase B [Archaeoglobus veneficus SNP6]
Length = 339
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/329 (44%), Positives = 210/329 (63%), Gaps = 5/329 (1%)
Query: 73 DRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTG 132
+R V+ T G P RP+ +YI+ G + +DKP PSSHEVV W++RIL V KTG
Sbjct: 14 ERFYVKDEATTDESYGCYPYNRPMEEYIKKGFVCVDKPMGPSSHEVVVWVRRILNVNKTG 73
Query: 133 HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGA 192
H+GTLDP+VTG L V I+ +T+LVK QG+ KEYV + RLH V + ++ R + G
Sbjct: 74 HTGTLDPRVTGVLPVMIEDSTKLVKVLQGSEKEYVALMRLHADVRE-EEIRRVMNLFVGK 132
Query: 193 VFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGV 252
++QRPPL SAVK+++R+R IY ++LE +D V+F + CEAGTY+R +C +G +LGV
Sbjct: 133 IYQRPPLKSAVKKRIRVREIYGIEILE--IDGRDVLFKVRCEAGTYIRKLCTDIGEVLGV 190
Query: 253 GGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRL 312
G HMQELRR R+G+ E+ T+HD++DA + +E YLR +I P+E+ + + ++
Sbjct: 191 GAHMQELRRTRTGVFDESMTY-TLHDLLDAYVFWKEEGEERYLREIIKPMELAVANVPKI 249
Query: 313 VVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCD 372
V+KD+ V+AIC+GA LM G++ E ++ +V + T K E VALG A M M
Sbjct: 250 VIKDSAVDAICHGADLMAKGVVYVEKTVKKDADVAIFTLKHELVALGKALMDAEDMLNVR 309
Query: 373 HGVVARIKRVVMDRDTYPRKWGLGPRASM 401
G V + RV+M+R TYP W G AS+
Sbjct: 310 SGPVVDVTRVIMERGTYPAMWK-GSTASL 337
>gi|167013309|pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA
Ribonucleoprotein Complex
Length = 334
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 202/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTL PKV+G L V
Sbjct: 28 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLAPKVSGVLPV 87
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 88 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRL 146
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 147 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 204
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ ++T+HD++D + + E Y R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 205 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 264
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 265 LAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRD 324
Query: 388 TYPRKW 393
YP+ W
Sbjct: 325 WYPKLW 330
>gi|409096152|ref|ZP_11216176.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus zilligii
AN1]
Length = 334
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 200/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRPL ++++G+INLDKP P+SHEVVAWIK++L + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPLEMHMQFGVINLDKPPGPTSHEVVAWIKKLLNLSKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I RATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 AIGRATRVVQALLPAGKEYVALMHLHGDVPE-DKILAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F EAGTYVR++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEVLE--IEGRDVLFRAGVEAGTYVRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E YLRR I P+E + ++ ++D+ V+A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYLRRAIQPMEKAVEHLPKVWIRDSAVSAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VA+G A MT+ M G+ + +V M R+
Sbjct: 269 LAVPGIVKLNEGIKKGDLVAIMTLKDELVAIGKATMTSGEMLQGSKGIAVDVDKVFMPRE 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKMW 334
>gi|88192797|pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
gi|88192798|pdb|2EY4|B Chain B, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex
Length = 333
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 137/304 (45%), Positives = 202/304 (66%), Gaps = 3/304 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ ++T+HD++D + + E Y R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRD 328
Query: 388 TYPR 391
YP+
Sbjct: 329 WYPK 332
>gi|212223242|ref|YP_002306478.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus onnurineus
NA1]
gi|226708676|sp|B6YSP4.1|TRUB_THEON RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|212008199|gb|ACJ15581.1| tRNA pseudouridine synthase B [Thermococcus onnurineus NA1]
Length = 334
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 200/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ ++++GIINLDKP P+SHEVVAW+K++ + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWVKKLFNLNKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH +VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGEVPE-DKIYAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGKDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ ++D+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ + +V M RD
Sbjct: 269 LAVPGIVKVHKGIKKGDLVAVMTLKDELVALGKATMTSGEMLQKSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>gi|111227952|gb|ABH08965.1| MFL-alpha [Drosophila melanogaster]
gi|112382764|gb|ABI17548.1| MFLalpha protein [Drosophila melanogaster]
Length = 253
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 159/202 (78%), Gaps = 2/202 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGT 237
KLL+YD R++ + SC T
Sbjct: 201 KLLDYDETRNMDLLIRSCNIWT 222
>gi|240104029|ref|YP_002960338.1| H/ACA RNA-protein complex component Cbf5p [Thermococcus
gammatolerans EJ3]
gi|259550546|sp|C5A255.1|TRUB_THEGJ RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|239911583|gb|ACS34474.1| Centromere binding protein CBF5/pseudouridine synthase truB-like
protein (truB) [Thermococcus gammatolerans EJ3]
Length = 334
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 199/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P +RP+ ++++GIINLDKP P+SHEVVAWIK++ + K GH GTLDPKV+G L V
Sbjct: 32 GFPPERRPMEMHMQFGIINLDKPPGPTSHEVVAWIKKLFNLSKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH +P+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDIPE-DKILAVMKEFQGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ ++D+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ + +V M RD
Sbjct: 269 LAVPGIVKLHKGIKKGDLVAIMTLKDELVALGKAMMTSGEMLQRSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YPR W
Sbjct: 329 WYPRMW 334
>gi|20089974|ref|NP_616049.1| H/ACA RNA-protein complex component Cbf5p [Methanosarcina
acetivorans C2A]
gi|37089065|sp|Q8TRR5.1|TRUB_METAC RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|19914936|gb|AAM04529.1| rRNA pseudouridine synthase [Methanosarcina acetivorans C2A]
Length = 338
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 204/316 (64%), Gaps = 4/316 (1%)
Query: 78 RTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTL 137
++G +T G +P KRP+++YI G++N+DKP+ P+SHEV AW+K IL V GH+G+L
Sbjct: 18 KSGAWTNPVYGCAPEKRPILEYIEKGVVNIDKPSGPTSHEVAAWVKAILGVNTAGHAGSL 77
Query: 138 DPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRP 197
DPKVTG L + +AT+ V + + +GKEYVC +LH +P V + E TG ++Q P
Sbjct: 78 DPKVTGLLPTLLGKATKAVPALRLSGKEYVCHLKLHRAMPP-KLVRKVCEEFTGPIYQMP 136
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P+ SAVKR +R+RTIY ++LE ++ V+F + CEAGTY+R +C +GL LG GGHMQ
Sbjct: 137 PIKSAVKRVIRVRTIYYIEVLE--IEGMSVLFRVGCEAGTYIRKLCHDIGLALGCGGHMQ 194
Query: 258 ELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
LRR ++G E +VT+H++ DA + DE+ LRRVI P+E ++ +++++D+
Sbjct: 195 ALRRTKAGPFTEK-TLVTLHELKDAYVFWKEDGDESELRRVIRPMESAVSHLPKIILRDS 253
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
V+A+C GA L +PG+ ++ + GE L T KGE VAL AEM T + G+ A
Sbjct: 254 AVDAVCSGASLAVPGITSLDSSLAEGELAALFTLKGELVALAKAEMNTEEILKASAGIAA 313
Query: 378 RIKRVVMDRDTYPRKW 393
RV+M+ TYP+ W
Sbjct: 314 SPIRVLMEAGTYPKGW 329
>gi|298674775|ref|YP_003726525.1| rRNA pseudouridine synthase [Methanohalobium evestigatum Z-7303]
gi|298287763|gb|ADI73729.1| rRNA pseudouridine synthase [Methanohalobium evestigatum Z-7303]
Length = 340
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 203/327 (62%), Gaps = 7/327 (2%)
Query: 73 DRLNVRTGHYTPLPN---GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVE 129
+R +V+ + P N G P RP+ D+I G++NLDKP P+SHE+ +W+K IL +
Sbjct: 16 ERGHVQKSKFKPFTNPNYGCPPENRPIYDHINMGVVNLDKPKGPTSHEITSWVKDILNIN 75
Query: 130 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEAL 189
K GHSG+LDPKVTG L + + +AT+ + S + + KEYVC+ +LHD V ++ R +
Sbjct: 76 KAGHSGSLDPKVTGVLPIMLQKATKAIGSLRLSNKEYVCLMQLHDTV-TADEIIRVCKEF 134
Query: 190 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
G +FQ+PP+ SAVKR+LRIRTI +LE + V+ + CEAGTY+R +C +G
Sbjct: 135 EGPIFQKPPIKSAVKRKLRIRTIDYLNILE--IKGSSVLLKVGCEAGTYLRKLCTDIGEA 192
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
+G G HMQEL+R ++G E DNM T+HD+ DA + Y E+ LR+ + P+E+ LT
Sbjct: 193 IGCGAHMQELKRTKTGPFCE-DNMTTLHDLKDAYVFWKEYGTESELRKFVQPVELALTHL 251
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
+V++D+ V+AIC GA L IPG++ +I G V L T KGE VAL A M +
Sbjct: 252 PSIVIRDSAVDAICRGASLAIPGIVSLNANIFNGNTVCLFTQKGEIVALCKASMDADEIL 311
Query: 370 TCDHGVVARIKRVVMDRDTYPRKWGLG 396
++G+ A + V+M+ TYP+ W G
Sbjct: 312 ETENGLAAITENVIMNAGTYPKAWNSG 338
>gi|91772110|ref|YP_564802.1| H/ACA RNA-protein complex component Cbf5p [Methanococcoides
burtonii DSM 6242]
gi|91711125|gb|ABE51052.1| tRNA pseudouridine synthase B [Methanococcoides burtonii DSM 6242]
Length = 331
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 203/306 (66%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P RP+++YI G++N+DK P+SHEV AW++ +L V+K GHSG+LDP VTG L V
Sbjct: 27 GCLPQDRPILEYINMGVVNIDKAIGPTSHEVTAWVRDMLGVKKAGHSGSLDPHVTGLLPV 86
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ RAT+ V + + +GKEY+CV LHD +PD K+ +A + TG ++Q PP+ISAVKRQL
Sbjct: 87 MLGRATKAVSALRLSGKEYICVMHLHDDIPD-RKIRKACKEFTGPIYQTPPIISAVKRQL 145
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IY +LE ++ V+ + CEAGTY+R +C +GL+LG GGHM++LRR +G
Sbjct: 146 RIRNIYYLDVLE--IEGREVLMRVGCEAGTYLRKLCHDIGLVLGCGGHMKQLRRTGTGPF 203
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D +V+++D+ DA + DE+ LR+++ P+E L+ +++++D+ V+A+C GA
Sbjct: 204 RE-DTLVSLYDLKDACVFWQEDGDESELRKLVRPMEEGLSHLPKIIIRDSAVDAVCRGAS 262
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG++ F I+ +++ + T KGEAVAL + M + HG+ +RV+MD
Sbjct: 263 LAVPGIVSFSKCIQKDDKIAVFTLKGEAVALCRSFMNADELENESHGIACITERVIMDAA 322
Query: 388 TYPRKW 393
YPR W
Sbjct: 323 IYPRCW 328
>gi|11497854|ref|NP_069076.1| H/ACA RNA-protein complex component Cbf5p [Archaeoglobus fulgidus
DSM 4304]
gi|3915164|sp|O30001.1|TRUB_ARCFU RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|2650403|gb|AAB90995.1| centromere/microtubule-binding protein (cbf5) [Archaeoglobus
fulgidus DSM 4304]
Length = 325
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 143/308 (46%), Positives = 200/308 (64%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KRP+ +YIR G++ +DKP PSSHEVV W++RIL V KTGH+GTLDP+VTG L +
Sbjct: 19 GCYPTKRPMEEYIRKGLVCIDKPMGPSSHEVVVWVRRILNVSKTGHAGTLDPRVTGVLPI 78
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHD--KVPDVAKVARALEALTGAVFQRPPLISAVKR 205
I+ AT++VK Q + KEYVC+ RLH K DV KV ++ G ++QRPPL SAVK+
Sbjct: 79 FIENATKMVKFLQESSKEYVCLMRLHGDAKREDVEKV---MKLFVGRIYQRPPLKSAVKK 135
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
LRIR IYE +LLE ++ V+F + E+GTY+R +C +G +LG G HMQELRR R+G
Sbjct: 136 VLRIREIYEMELLE--MEGRDVLFRVVTESGTYIRKLCRDIGEVLGTGAHMQELRRTRTG 193
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
GE D T+ D++DA + +E YLR +I P+EV ++V+KD+ V+AIC+G
Sbjct: 194 KFGE-DMCYTLQDLLDAYVFWKEEGEEKYLREIIKPMEVAAAELPKIVIKDSAVDAICHG 252
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L + G+ E +++ V + T K E VA+G A M + G+ A I+RV+M+
Sbjct: 253 ANLSVRGVAYVEKNVKKDSTVAIFTLKNELVAIGRALMDAEDIYRLKKGIAADIQRVMME 312
Query: 386 RDTYPRKW 393
R YP+ W
Sbjct: 313 RGVYPKVW 320
>gi|386768562|ref|NP_001246490.1| nucleolar protein at 60B, isoform G [Drosophila melanogaster]
gi|383302677|gb|AFH08243.1| nucleolar protein at 60B, isoform G [Drosophila melanogaster]
Length = 227
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 132/202 (65%), Positives = 158/202 (78%), Gaps = 2/202 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGT 237
KLL+YD R++ + C T
Sbjct: 201 KLLDYDETRNMDLLIRLCNIWT 222
>gi|289191620|ref|YP_003457561.1| rRNA pseudouridine synthase [Methanocaldococcus sp. FS406-22]
gi|288938070|gb|ADC68825.1| rRNA pseudouridine synthase [Methanocaldococcus sp. FS406-22]
Length = 336
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 198/306 (64%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + D I+YG++ +DKP P+SHEV W+K+IL+++K GH GTLDPKVTG L V
Sbjct: 31 GCNPYERKIEDLIKYGVVVIDKPRGPTSHEVSTWVKKILKLDKAGHGGTLDPKVTGVLPV 90
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RAT+ + KEY+C+ LH + + R + TG ++QRPPL +AVKR+L
Sbjct: 91 ALERATKTIPMWHIPPKEYICLMHLHRDASE-EDILRVFKEFTGRIYQRPPLKAAVKRRL 149
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR I+E +LL D + V+F + C++GTY+R +C LG LG HMQELRRV+SG
Sbjct: 150 RIRKIHELELL--DKEGKDVLFRVKCQSGTYIRKLCEDLGEALGTSAHMQELRRVKSGCF 207
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D V + D++DA + DE LRRVI P+E L+ K++VVKD+ V+AIC+GA
Sbjct: 208 EEKDA-VYLQDLVDAYVFWKEDGDEEELRRVIKPMEYGLSHLKKVVVKDSAVDAICHGAD 266
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ + G+ + I GE V++ T KGEAVA+G A M T + D G+ ++RV MDR
Sbjct: 267 VYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGIAVDVERVYMDRG 326
Query: 388 TYPRKW 393
TYPR W
Sbjct: 327 TYPRMW 332
>gi|256810175|ref|YP_003127544.1| H/ACA RNA-protein complex component Cbf5p [Methanocaldococcus
fervens AG86]
gi|256793375|gb|ACV24044.1| rRNA pseudouridine synthase [Methanocaldococcus fervens AG86]
Length = 328
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 197/306 (64%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + D I+YG++ +DKP P+SHEV +W+K+IL ++K GH GTLDPKVTG L V
Sbjct: 23 GCNPYERKIEDLIKYGVVVIDKPRGPTSHEVSSWVKKILNLDKAGHGGTLDPKVTGVLPV 82
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RAT+ + KEY+C+ LH + + R + TG ++QRPPL +AVKR+L
Sbjct: 83 ALERATKTIPMWHIPPKEYICLMHLHRDASE-EDILRIFKEFTGRIYQRPPLKAAVKRRL 141
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IYE +LL D++ V+F + C++GTY+R +C +G LG HMQELRRV+SG
Sbjct: 142 RIRKIYELELL--DLEGRDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRVKSGCF 199
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D V + D++DA + DE LRR+I P+E L K++VVKD+ V+AIC+GA
Sbjct: 200 EEKDA-VYLQDLLDAYIFWKEDGDEEELRRIIKPMEYGLRHLKKVVVKDSAVDAICHGAD 258
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ + G+ + I GE V++ T KGEAV +G A M T + D G+ ++RV MDR
Sbjct: 259 VYVRGIAKLSKGIGKGEIVLIETLKGEAVGVGKALMNTKEILNSDKGIAVDVERVYMDRG 318
Query: 388 TYPRKW 393
TYPR W
Sbjct: 319 TYPRMW 324
>gi|333987649|ref|YP_004520256.1| tRNA pseudouridine synthase B [Methanobacterium sp. SWAN-1]
gi|333825793|gb|AEG18455.1| tRNA pseudouridine synthase B [Methanobacterium sp. SWAN-1]
Length = 320
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 200/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + D+I G++NLDKP P+SHE+ +W+K+IL VEKTGH GTLDP+VTG L +
Sbjct: 17 GSTPEERLIRDHISMGVVNLDKPMGPTSHEIDSWVKKILHVEKTGHGGTLDPRVTGVLPM 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I+++TR+++ GA KEYVC+ RLH+ + D A + L+ TG +FQ PPL SAVKR+L
Sbjct: 77 GINQSTRVIQMLLGAPKEYVCLMRLHEMI-DEADIRDILQEFTGKIFQLPPLKSAVKREL 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+R IY +LE ++ V+F I CE GTY+R C +G LG G HM ELRR SG
Sbjct: 136 RVRRIYYVNILE--IEGQDVLFRIGCEGGTYIRKYCHDIGEALGCGAHMAELRRTISGPF 193
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
+++ + T+HD+ DA + + DE+ LR I+P+E ++ +++++D+ V+AIC+GA
Sbjct: 194 HDDETIKTLHDITDAYHAWVDDGDESQLRDCILPMESAVSHLPKIIIRDSAVDAICHGAD 253
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+L DI+ V ++T KGE VA G + T V+ D G++ + K+V M +
Sbjct: 254 LAAGGILSLSQDIDKKSTVAILTLKGELVAAGESVETAGVIHKSDKGIMVKTKKVFMQPE 313
Query: 388 TYPRKW 393
TYP+ W
Sbjct: 314 TYPKMW 319
>gi|21228256|ref|NP_634178.1| H/ACA RNA-protein complex component Cbf5p [Methanosarcina mazei
Go1]
gi|37089030|sp|Q8PV20.1|TRUB_METMA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|20906713|gb|AAM31850.1| tRNA pseudouridine synthase [Methanosarcina mazei Go1]
Length = 338
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 202/316 (63%), Gaps = 4/316 (1%)
Query: 78 RTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTL 137
++G +T G P KRP+ +YI G++N+DKP P+SHEV AW+K IL V GH+G+L
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTSHEVAAWVKAILGVHTAGHAGSL 77
Query: 138 DPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRP 197
DPKVTG L + +AT V + + +GKEY+C +LH +P V + E TG ++Q P
Sbjct: 78 DPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKLHRAMPQ-KLVRQVCEEFTGPIYQMP 136
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P+ SAVKR +R+RTIY ++LE ++ V+F + CEAGTY+R +C +GL LG GGHMQ
Sbjct: 137 PIKSAVKRVIRVRTIYHLEVLE--IEGTSVLFRVGCEAGTYIRKLCHDIGLALGCGGHMQ 194
Query: 258 ELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
LRR ++G E ++T+H++ DA + DE+ LRRVI P+E ++ +++++D+
Sbjct: 195 GLRRTKAGPFTEK-TLITLHELKDAYVFWKEDGDESELRRVIRPMESAVSHLPKIILRDS 253
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
V+AIC GA L +PG+ ++++ GE L T KGE VAL A+MTT + G+ A
Sbjct: 254 AVDAICSGASLAVPGITGLDSNLAEGELTGLFTLKGELVALAKAKMTTEEILKASAGIAA 313
Query: 378 RIKRVVMDRDTYPRKW 393
RV+M+ TYPR W
Sbjct: 314 SPIRVLMEAGTYPRGW 329
>gi|410670324|ref|YP_006922695.1| H/ACA RNA-protein complex component Cbf5p [Methanolobus
psychrophilus R15]
gi|409169452|gb|AFV23327.1| H/ACA RNA-protein complex component Cbf5p [Methanolobus
psychrophilus R15]
Length = 346
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 208/333 (62%), Gaps = 5/333 (1%)
Query: 67 ILLKNYDRLNVRTGHYTPLPN-GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRI 125
+L Y R V+ T P+ G P +RP+ +Y+ G++NLDK P+SHEV AW+K I
Sbjct: 16 MLPSEYPRELVQRTQATTNPSYGCLPAERPIREYVEMGVVNLDKLQGPTSHEVTAWVKDI 75
Query: 126 LRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARA 185
L + + GHSG+LDP VTG + + RAT++V + + +GKEY+C RLH+ P+ KV
Sbjct: 76 LELRRAGHSGSLDPGVTGVQPIMLGRATKVVSALRLSGKEYICHMRLHEPAPE-KKVRTV 134
Query: 186 LEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
E G +FQ PP+ISAVKR+LR+R IY ++LE V V+ + CEAGTY+R +C
Sbjct: 135 CEEFVGPLFQMPPVISAVKRELRVRMIYYLEVLE--VKDKSVLMRVGCEAGTYMRKLCHD 192
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVL 305
+G+ LG G HMQ+LRR ++G E D +V +H++ DA + DE+ LRRV+ PLE
Sbjct: 193 IGMALGTGAHMQQLRRTKTGPFRE-DTLVNLHELKDAYVFWKEDHDESCLRRVVRPLEEG 251
Query: 306 LTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
L R++V+D+ ++A+C GA L +PG++ E I ++V + + KGEAV+L A M T
Sbjct: 252 LAHLPRIIVRDSAIDAVCQGAALAVPGIVSLEKSIRKDDQVCIFSLKGEAVSLSRALMDT 311
Query: 366 AVMATCDHGVVARIKRVVMDRDTYPRKWGLGPR 398
M + + G+ A +RV+M TYP+ W PR
Sbjct: 312 EEMFSSEQGLAALTERVIMVAGTYPQGWKSKPR 344
>gi|410721689|ref|ZP_11361019.1| rRNA pseudouridine synthase, putative [Methanobacterium sp.
Maddingley MBC34]
gi|410598435|gb|EKQ53008.1| rRNA pseudouridine synthase, putative [Methanobacterium sp.
Maddingley MBC34]
Length = 338
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 194/306 (63%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +RP+ +++ GIINLDKP+ P+SHE+ AW+KRIL EKTGH GTLDP+VTG L +
Sbjct: 35 GCKPEERPIEEHLSRGIINLDKPSGPTSHEIDAWVKRILPCEKTGHGGTLDPRVTGVLPI 94
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
ID ATR ++ A KEYVC+ LH+ V + ++ LE TG +FQ PPL SAVKR+L
Sbjct: 95 GIDTATRAIQLLLEAPKEYVCLMHLHEDVGET-RIRNILEEFTGKIFQTPPLRSAVKREL 153
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIY +LE +D +F I CEAGTY+R C +G LG G HM ELRR R
Sbjct: 154 RVRTIYYVNILE--IDGQDALFKIGCEAGTYIRKYCHDIGEALGCGAHMAELRRTRVADF 211
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ + T+ DV DA + DEA LR ++P+E + K++VV+D+ V+A+C+GA
Sbjct: 212 KEDETLKTLQDVTDAYHYWREDDDEAPLRECVLPMERAASHLKKVVVRDSAVDALCHGAD 271
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+L+ I+ E + ++T KGE VA G A TT + D G++ IK+V M+
Sbjct: 272 LAAGGILKLSEGIKRNETLAVLTLKGELVAAGEALATTNEIDQADKGIMVNIKKVFMEPG 331
Query: 388 TYPRKW 393
TYP W
Sbjct: 332 TYPMMW 337
>gi|15668320|ref|NP_247116.1| H/ACA RNA-protein complex component Cbf5p [Methanocaldococcus
jannaschii DSM 2661]
gi|3915195|sp|Q57612.1|TRUB_METJA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|1590909|gb|AAB98132.1| centromere/microtubule-binding protein (cbf5) [Methanocaldococcus
jannaschii DSM 2661]
Length = 336
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 195/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + D I+YG++ +DKP P+SHEV W+K+IL ++K GH GTLDPKVTG L V
Sbjct: 31 GCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPV 90
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RAT+ + KEYVC+ LH + + R + TG ++QRPPL +AVKR+L
Sbjct: 91 ALERATKTIPMWHIPPKEYVCLMHLHRDASE-EDILRVFKEFTGRIYQRPPLKAAVKRRL 149
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR I+E +LL D D V+F + C++GTY+R +C +G LG HMQELRR +SG
Sbjct: 150 RIRKIHELELL--DKDGKDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCF 207
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D V + D++DA + DE LRRVI P+E L K++VVKD+ V+AIC+GA
Sbjct: 208 EEKDA-VYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGAD 266
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ + G+ + I GE V++ T KGEAVA+G A M T + D GV ++RV MDR
Sbjct: 267 VYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRG 326
Query: 388 TYPRKW 393
TYPR W
Sbjct: 327 TYPRMW 332
>gi|83754023|pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 195/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + D I+YG++ +DKP P+SHEV W+K+IL ++K GH GTLDPKVTG L V
Sbjct: 52 GCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPV 111
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RAT+ + KEYVC+ LH + + R + TG ++QRPPL +AVKR+L
Sbjct: 112 ALERATKTIPMWHIPPKEYVCLMHLHRDASE-EDILRVFKEFTGRIYQRPPLKAAVKRRL 170
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR I+E +LL D D V+F + C++GTY+R +C +G LG HMQELRR +SG
Sbjct: 171 RIRKIHELELL--DKDGKDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCF 228
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D V + D++DA + DE LRRVI P+E L K++VVKD+ V+AIC+GA
Sbjct: 229 EEKDA-VYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGAD 287
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ + G+ + I GE V++ T KGEAVA+G A M T + D GV ++RV MDR
Sbjct: 288 VYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRG 347
Query: 388 TYPRKW 393
TYPR W
Sbjct: 348 TYPRMW 353
>gi|452210691|ref|YP_007490805.1| tRNA pseudouridine 55 synthase [Methanosarcina mazei Tuc01]
gi|452100593|gb|AGF97533.1| tRNA pseudouridine 55 synthase [Methanosarcina mazei Tuc01]
Length = 338
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 202/316 (63%), Gaps = 4/316 (1%)
Query: 78 RTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTL 137
++G +T G P KRP+ +YI G++N+DKP P+SHEV AW+K IL V GH+G+L
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTSHEVAAWVKAILGVHTAGHAGSL 77
Query: 138 DPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRP 197
DPKVTG L + +AT V + + +GKEY+C +LH +P V + E TG ++Q P
Sbjct: 78 DPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKLHRAMPQ-KLVRQVCEEFTGPIYQMP 136
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P+ SAVKR +R+RTIY ++LE ++ V+F + CEAGTY+R +C +GL LG GGHMQ
Sbjct: 137 PIKSAVKRVIRVRTIYYLEVLE--IEGTSVLFRVGCEAGTYIRKLCHDIGLALGCGGHMQ 194
Query: 258 ELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
LRR ++G E ++T+H++ DA + DE+ LRRVI P+E ++ +++++D+
Sbjct: 195 GLRRTKAGPFTEK-TLITLHELKDAYVFWKEDGDESELRRVIRPMESAVSHLPKIILRDS 253
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
V+AIC GA L +PG+ ++++ GE L T KGE VAL A+MTT + G+ A
Sbjct: 254 AVDAICSGASLAVPGITGLDSNLAEGELTGLFTLKGELVALAKAKMTTEEILKASAGIAA 313
Query: 378 RIKRVVMDRDTYPRKW 393
RV+M+ TYPR W
Sbjct: 314 SPIRVLMEAGTYPRGW 329
>gi|383319781|ref|YP_005380622.1| tRNA pseudouridine synthase B [Methanocella conradii HZ254]
gi|379321151|gb|AFD00104.1| tRNA pseudouridine synthase B [Methanocella conradii HZ254]
Length = 329
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 193/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR + + + G+INLDKP P+SHEV AW+K IL +++ GHSGTLDP VTG L +
Sbjct: 23 GKDPYKRSIAELLDEGVINLDKPYGPTSHEVTAWVKNILHIKRAGHSGTLDPHVTGVLPI 82
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ ATRLV+ +GKEYVCV RLH +P+ +V LE TG ++QRPPL+SAVKRQL
Sbjct: 83 MLGDATRLVRVLLLSGKEYVCVMRLHADLPE-ERVRAILEEFTGVIYQRPPLVSAVKRQL 141
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R RTIY LE + V+F + CEAGTY+R +C +G LGVG HM ELRR +SG
Sbjct: 142 RKRTIYYIDFLE--MRGRDVLFKVGCEAGTYIRKLCHDVGEALGVGAHMYELRRTKSGPF 199
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ ++T+HD+ DA + Y DEA LR++I+P+E L + R++VKD+ V A+ GA
Sbjct: 200 KEDETLITLHDLTDAYYYYTQ-GDEAPLRKIILPMEYALRNMPRIIVKDSAVGALAEGAP 258
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L + G+ + + I G+ V + T GE V++G A M+T + G V+M
Sbjct: 259 LFVQGVCKVDTGIRQGDTVAVFTHMGEVVSIGTARMSTEELMAAKEGQALDTLCVMMKPG 318
Query: 388 TYPRKW 393
YP +W
Sbjct: 319 VYPPEW 324
>gi|345316965|ref|XP_001517269.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial
[Ornithorhynchus anatinus]
Length = 328
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/204 (64%), Positives = 173/204 (84%), Gaps = 1/204 (0%)
Query: 186 LEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
LE LT A+FQRPPLI+AVKRQLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVH
Sbjct: 1 LETLTRALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVH 60
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVL 305
LGL+LGVGG MQELRRVRSG++GE D+MVTMHDV+DAQW YDN +DE+YLRRVI PLE L
Sbjct: 61 LGLLLGVGGQMQELRRVRSGVMGEKDHMVTMHDVLDAQWQYDNNKDESYLRRVIYPLEKL 120
Query: 306 LTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
LTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E+V++TTKGEA+ + +
Sbjct: 121 LTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMATVKKEP 180
Query: 366 AVMATCDHGV-VARIKRVVMDRDT 388
T V VA++++V++++ +
Sbjct: 181 VTPVTPVAPVEVAKVQKVLLNKPS 204
>gi|70933703|ref|XP_738187.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56514195|emb|CAH75164.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 246
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 122/188 (64%), Positives = 152/188 (80%)
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
T+C H+GL+LGVG HMQELRRV+SG + E DNM T+HD+MDAQ++YD DE YLR++I
Sbjct: 1 TLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDIMDAQYIYDTTGDETYLRKIIT 60
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLE LL ++ R+V+KD+ VNAICYGAKL IPG+LRF+N+I+V E+VLMTTKGEAVAL I
Sbjct: 61 PLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVYSEIVLMTTKGEAVALAI 120
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
A+MT+ V+AT DHG+VA KRV+MDRDTY KWG G R+ KKKLI G LDK+GK NEK
Sbjct: 121 AQMTSTVIATVDHGIVALTKRVIMDRDTYDVKWGFGNRSMEKKKLILAGLLDKYGKPNEK 180
Query: 421 TPQEWARN 428
TP W ++
Sbjct: 181 TPISWIKS 188
>gi|347524226|ref|YP_004781796.1| rRNA pseudouridine synthase [Pyrolobus fumarii 1A]
gi|343461108|gb|AEM39544.1| rRNA pseudouridine synthase [Pyrolobus fumarii 1A]
Length = 376
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 193/306 (63%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P RP+ ++IR G++ LDKP P+SHEVVAWIKR+ + K GH GTLDPKVTG L V
Sbjct: 39 GTPPWARPIEEHIRKGVVPLDKPPGPTSHEVVAWIKRMFGLSKAGHGGTLDPKVTGVLPV 98
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ AT+++ KEY+CV +LH+ V + K+ A++ T ++QRPPL S+VKR L
Sbjct: 99 ALEEATKIIGMVVHTPKEYICVMQLHEPVEE-KKLLEAIKVFTSTIYQRPPLRSSVKRSL 157
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R +TIYE +LLEY L+ + C+ GTY+R +C +GL LGVG HM+ELRR +SG
Sbjct: 158 RTKTIYEIELLEYTGRYALMR--VLCDPGTYMRKLCHDIGLYLGVGAHMRELRRTKSGPF 215
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E +V + D+ +A + + + LR+ I+P+E + K++V++D+ V+AI +GA
Sbjct: 216 REAYGLVKLQDLSEALYRWKQEGKDDLLRKYILPMEYAVAHLKKVVIRDSAVDAIAHGAH 275
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ R DI+ G+ V + T KGE VAL AEM +A G+ R RV+M
Sbjct: 276 LAVPGIARLHADIKKGDVVAIFTLKGELVALAKAEMDAEQIAKAQKGIAFRTMRVIMKPG 335
Query: 388 TYPRKW 393
YPR W
Sbjct: 336 VYPRMW 341
>gi|296109351|ref|YP_003616300.1| rRNA pseudouridine synthase [methanocaldococcus infernus ME]
gi|295434165|gb|ADG13336.1| rRNA pseudouridine synthase [Methanocaldococcus infernus ME]
Length = 320
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 197/306 (64%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR + D I+YGI+ +DKP P+SHEV +W+++IL + K+GH GTLDPKVTG L V
Sbjct: 15 GSYPEKRKIEDLIKYGIVVIDKPRGPTSHEVSSWVRKILNINKSGHGGTLDPKVTGVLPV 74
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RA R + KEYVC+ LH + D KV + TG ++QRPPL SAVK+++
Sbjct: 75 ALERAVRTIDLWHIPPKEYVCLMHLHRDI-DEDKVREIFKEFTGKIYQRPPLKSAVKKRV 133
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR I+E +LLE D V+F + C++GTY+R +C +G LGV HMQELRR +SG
Sbjct: 134 RIRKIHELELLEKDGKD--VLFRVKCQSGTYIRKLCEDIGEALGVSAHMQELRRTKSGNF 191
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D V + D++DA + +DE LR++I P+E L K++VVKD+ V+AIC+GA
Sbjct: 192 EEKD-CVYLQDLLDAYIFWKEDKDEEELRKIIKPMEKGLEHLKKIVVKDSAVDAICHGAN 250
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ + G+ + DI G+ VV+ T KGEA+ +G A M+T + D G ++RV M+R
Sbjct: 251 VYVKGISKLSKDINRGDLVVVETLKGEAIGIGKALMSTKEILEKDKGEAVDMERVFMERG 310
Query: 388 TYPRKW 393
TYPR W
Sbjct: 311 TYPRMW 316
>gi|325303278|tpg|DAA34775.1| TPA_inf: pseudouridine synthase [Amblyomma variegatum]
Length = 214
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 122/184 (66%), Positives = 148/184 (80%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+I P S++TSQWP+LLKN+D+LNVRT HY P+P+G +PLKR L +Y+R G INL
Sbjct: 31 DFLIAPSDKAGSLNTSQWPLLLKNFDKLNVRTNHYVPMPHGSNPLKRELREYVRSGFINL 90
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP NPSSHEVVAW+KRIL+VEKTGHSGTLDPKV+G LIVCI+R TRL KSQQ AGKEYV
Sbjct: 91 DKPCNPSSHEVVAWVKRILKVEKTGHSGTLDPKVSGCLIVCIERTTRLAKSQQSAGKEYV 150
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ +LH A V +A E L GA+FQRPPLI+AVKRQLRIRTIY+SKLL+Y+ ++
Sbjct: 151 AIFKLHQDPASYAHVVQACEKLKGAMFQRPPLIAAVKRQLRIRTIYDSKLLDYEPKHNMG 210
Query: 228 VFWI 231
V W+
Sbjct: 211 VLWM 214
>gi|324520216|gb|ADY47585.1| H/ACA ribonucleoprotein complex subunit 4 [Ascaris suum]
Length = 240
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 128/214 (59%), Positives = 163/214 (76%), Gaps = 6/214 (2%)
Query: 242 MCVHLGLIL----GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
MC H IL GVGG MQELRRVRSGI GE D +VTMHD++DAQ+LYD++ DE+YLRR
Sbjct: 1 MCEHFVFILVCCLGVGGQMQELRRVRSGITGEKDQLVTMHDILDAQYLYDHHNDESYLRR 60
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVA 357
VI PLE LL ++KR++VKD+ VNAICYGAK+++PG+LRFE+ IE+ EE+V++TTKGEA+
Sbjct: 61 VIRPLEALLVAHKRIIVKDSAVNAICYGAKILLPGILRFEDGIELNEEIVVVTTKGEAIC 120
Query: 358 LGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKL 417
+ +A+MTT+ MA DHGVVA+IKRV+M+RDTY RKWGLGP + KK +I +G LDK+GK
Sbjct: 121 IALAQMTTSTMAITDHGVVAKIKRVIMERDTYARKWGLGPVSMKKKSMIKQGLLDKYGKP 180
Query: 418 NEKTPQEW--ARNVVLPPGGDSVVASLAAAAEQT 449
NE TP W A + V P D + AEQT
Sbjct: 181 NENTPAGWRSAYHDVSLPNADGNDQDVTEGAEQT 214
>gi|222445023|ref|ZP_03607538.1| hypothetical protein METSMIALI_00640 [Methanobrevibacter smithii
DSM 2375]
gi|261350408|ref|ZP_05975825.1| putative rRNA pseudouridine synthase [Methanobrevibacter smithii
DSM 2374]
gi|222434588|gb|EEE41753.1| putative rRNA pseudouridine synthase [Methanobrevibacter smithii
DSM 2375]
gi|288861191|gb|EFC93489.1| putative rRNA pseudouridine synthase [Methanobrevibacter smithii
DSM 2374]
Length = 320
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 192/306 (62%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + DYI +G+INLDKP+ P+SHE+ +W+KRIL +EK+GH GTLDPKVTG L V
Sbjct: 17 GCAPEEREISDYISHGVINLDKPSGPTSHEIDSWVKRILNLEKSGHGGTLDPKVTGVLPV 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ ATR ++ A KEYVCV H +V D K+ TG +FQ PP+ SAVKR+L
Sbjct: 77 GLGDATRAIQLLLTAPKEYVCVMTFHHEV-DEDKIREVFNEFTGKIFQLPPVKSAVKREL 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y S + Y+++ V+F I CEAGTYVRT C ++G +GVG HM ELRR + G
Sbjct: 136 RSRNVYYSTI--YEINGRDVLFRIGCEAGTYVRTYCHNIGEAIGVGAHMAELRRTQVGSF 193
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++++ T+ DV DA Y DE++LR+ IMP+E ++V+KD+ V+AIC+GA
Sbjct: 194 TEDNHLSTLQDVTDAYHFYKEDGDESFLRKAIMPMERAADYLPKVVIKDSAVDAICHGAN 253
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ ++I+ V + T KGE VA G + ++ + + G + +V M D
Sbjct: 254 LASGGIAYLSDNIQKNSIVAIETLKGELVASGNSLFSSDEILNLESGFAVNVSKVFMKTD 313
Query: 388 TYPRKW 393
YP+ W
Sbjct: 314 IYPKMW 319
>gi|148642792|ref|YP_001273305.1| H/ACA RNA-protein complex component Cbf5p [Methanobrevibacter
smithii ATCC 35061]
gi|148551809|gb|ABQ86937.1| tRNA pseudouridine synthase B, TruB [Methanobrevibacter smithii
ATCC 35061]
Length = 320
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 192/306 (62%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + DYI +G+INLDKP+ P+SHE+ +W+KRIL +EK+GH GTLDPKVTG L V
Sbjct: 17 GCAPEEREISDYISHGVINLDKPSGPTSHEIDSWVKRILNLEKSGHGGTLDPKVTGVLPV 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ ATR ++ A KEYVCV H +V D K+ TG +FQ PP+ SAVKR+L
Sbjct: 77 GLGDATRAIQLLLTAPKEYVCVMTFHHEV-DEDKIREVFNEFTGKIFQLPPVKSAVKREL 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y S + Y+++ V+F I CEAGTYVRT C ++G +GVG HM ELRR + G
Sbjct: 136 RSRNVYYSTI--YEINGRDVLFRIGCEAGTYVRTYCHNIGEAIGVGAHMAELRRTQVGSF 193
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++++ T+ DV DA Y DE++LR+ IMP+E ++V+KD+ V+AIC+GA
Sbjct: 194 TEDNHLSTLQDVTDAYHFYKEDGDESFLRKAIMPMERAADYLPKVVIKDSAVDAICHGAN 253
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ ++I+ V + T KGE VA G + ++ + + G + +V M D
Sbjct: 254 LASGGIAYLSDNIQKNSIVAIETLKGELVASGNSLFSSDEILDLESGFAVNVSKVFMKTD 313
Query: 388 TYPRKW 393
YP+ W
Sbjct: 314 IYPKMW 319
>gi|261403018|ref|YP_003247242.1| H/ACA RNA-protein complex component Cbf5p [Methanocaldococcus
vulcanius M7]
gi|261370011|gb|ACX72760.1| rRNA pseudouridine synthase [Methanocaldococcus vulcanius M7]
Length = 332
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/311 (43%), Positives = 194/311 (62%), Gaps = 5/311 (1%)
Query: 83 TPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 142
T GY P KRP+ + I+YG++ +DKP P+SHEV W+K+IL +EK GH GTLDPKVT
Sbjct: 22 TSWDYGYDPYKRPIEELIKYGVVVIDKPRGPTSHEVSTWVKKILNLEKAGHGGTLDPKVT 81
Query: 143 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISA 202
G L V ++RAT+ + KEYVC+ LH + + + + TG ++Q+PPL +A
Sbjct: 82 GVLPVALERATKTIPLWHIPPKEYVCLMHLHRDASE-EDILKIFKEFTGKIYQKPPLKAA 140
Query: 203 VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRV 262
VKR+LRIR I++ +LL D D V+F + C++GTY+R +C +G LG HMQELRRV
Sbjct: 141 VKRRLRIRKIHDLELL--DKDGRDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRV 198
Query: 263 RSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAI 322
+SG E D + D++DA + DE +R++I P+E L K++VVKD+ V+AI
Sbjct: 199 KSGCFEEKDT-TYLQDLLDAYIFWKEDGDEE-IRKIIKPMEYGLKHLKKVVVKDSAVDAI 256
Query: 323 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
C+GA + + G+ + I GE V++ T KGEAV G A M M + GV ++RV
Sbjct: 257 CHGADVYVRGISKVSKGIGKGEPVLIETLKGEAVGFGSALMNYKDMLNAEKGVAVNVERV 316
Query: 383 VMDRDTYPRKW 393
MDR TYP+ W
Sbjct: 317 FMDRGTYPKMW 327
>gi|119874647|gb|ABM05800.1| dyskerin [Xenoturbella bocki]
Length = 183
Score = 266 bits (680), Expect = 3e-68, Method: Composition-based stats.
Identities = 132/183 (72%), Positives = 160/183 (87%)
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
CV RLH + D K+ +A+E L GAVFQRPPLISAVKRQLRIRTIY+SKL+EYD DRHL
Sbjct: 1 CVLRLHSAIEDQLKLTKAIETLQGAVFQRPPLISAVKRQLRIRTIYDSKLIEYDEDRHLA 60
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
+ W+SCEAGTYVRT+CVHLGL+LGVGG MQELRR RSGI+ ENDN+VTMHDVMDAQW+YD
Sbjct: 61 IIWMSCEAGTYVRTLCVHLGLLLGVGGQMQELRRNRSGIVSENDNIVTMHDVMDAQWVYD 120
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
+ +DEAYLRRVI PLE LL ++KR+V+KDT VNA+CYGAK+M+PG+LRFE+ IE+ + VV
Sbjct: 121 HQKDEAYLRRVIKPLEGLLLTHKRIVMKDTAVNAVCYGAKIMLPGVLRFEDGIELNQPVV 180
Query: 348 LMT 350
+M+
Sbjct: 181 IMS 183
>gi|435852111|ref|YP_007313697.1| rRNA pseudouridine synthase, putative [Methanomethylovorans
hollandica DSM 15978]
gi|433662741|gb|AGB50167.1| rRNA pseudouridine synthase, putative [Methanomethylovorans
hollandica DSM 15978]
Length = 339
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 202/307 (65%), Gaps = 6/307 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G SP R + ++ G++NL+KP+ P+SHEV AW+K IL +EK GHSG+LDP VTG L +
Sbjct: 30 GCSPYMRSIDKHLLMGVVNLNKPSGPTSHEVTAWVKSILEIEKAGHSGSLDPGVTGLLPL 89
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEA-LTGAVFQRPPLISAVKRQ 206
+ +AT+ V + + +GKEY+C+ RLHD +P+ KV + + A G ++Q PP+ISAVKR
Sbjct: 90 MLGKATKTVSALRLSGKEYICLMRLHDTLPE--KVVKKVCAEFNGPIYQMPPVISAVKRS 147
Query: 207 LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGI 266
+R+R IY +LE +D +V+ + CEAGTY+R +C +GL LG G +MQ+L R R+G
Sbjct: 148 IRVRNIYYLDVLE--IDGPMVLMKVGCEAGTYIRKLCHDIGLALGCGANMQQLIRTRTGP 205
Query: 267 LGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGA 326
D VT+ ++ DA L+ E LRRV+ P+E L R++V+D+ V+A+C+GA
Sbjct: 206 F-TGDTAVTLQELKDAFVLWKEGCSEDELRRVVRPMEEGLAHLPRIIVRDSAVDALCHGA 264
Query: 327 KLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDR 386
L +PG++ + I+ ++V + T KGEAVA+ A+M TA + +G+ A +RV+MD
Sbjct: 265 SLAVPGIVSLDPGIKHEQQVCIFTLKGEAVAIATAKMDTAGIMDASNGLAAYTERVIMDV 324
Query: 387 DTYPRKW 393
D YP+ W
Sbjct: 325 DVYPKCW 331
>gi|147919305|ref|YP_686959.1| putative tRNA pseudouridine synthase B [Methanocella arvoryzae
MRE50]
gi|110622355|emb|CAJ37633.1| putative tRNA pseudouridine synthase B [Methanocella arvoryzae
MRE50]
Length = 328
Score = 265 bits (677), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 189/306 (61%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + + + G+INLDKP+ P+SHEVV+W+K IL + + GHSGTLDP VTG L
Sbjct: 23 GKDPQTRTIKELLDQGVINLDKPSGPTSHEVVSWVKNILEIRRAGHSGTLDPHVTGVLPT 82
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ ATRLV++ +GKEY CV RLHD VP+ K+ ++ G ++QRPPL+SAVKRQ+
Sbjct: 83 MLGDATRLVQTLLLSGKEYACVMRLHDDVPE-KKLRAVMDEFVGVIYQRPPLVSAVKRQV 141
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R+IY + LE D V+F + CEAGTY+R +C +G +G G HM ELRR RSG
Sbjct: 142 RKRSIYYIEFLEQDGRD--VLFIVGCEAGTYIRKLCHDIGEAIGCGAHMYELRRTRSGPF 199
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E+D+++T+H + DA +Y DE LR+ I P+E L +++VKD+ V+A+ GA
Sbjct: 200 AEDDSLITLHMLKDAYTIYKETGDEKPLRKCIYPMEYALRHLPKIIVKDSAVDALARGAS 259
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ + E I G+ V + T GE V++G A+MTT + + G VVM
Sbjct: 260 LHAQGISQLETGINKGDMVAVFTHMGEVVSIGRAKMTTDELMSAKEGQALDTVAVVMKPG 319
Query: 388 TYPRKW 393
YP W
Sbjct: 320 IYPSAW 325
>gi|408381892|ref|ZP_11179439.1| H/ACA RNA-protein complex component Cbf5p [Methanobacterium
formicicum DSM 3637]
gi|407815340|gb|EKF85925.1| H/ACA RNA-protein complex component Cbf5p [Methanobacterium
formicicum DSM 3637]
Length = 320
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 139/308 (45%), Positives = 195/308 (63%), Gaps = 7/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +RP+ +++ GIINLDKP+ P+SHE+ AW+KRIL EKTGH GTLDP+VTG L +
Sbjct: 17 GTKPEERPIEEHLSRGIINLDKPSGPTSHEIDAWVKRILPCEKTGHGGTLDPRVTGVLPI 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
ID ATR ++ A KEYVC+ RLH+ V + + + L TG +FQ PP+ SAVKR+L
Sbjct: 77 GIDNATRAIQLLLEAPKEYVCLMRLHEDVGETS-IRDILGEFTGKIFQTPPMRSAVKREL 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIY +LE +D +F I CEAGTY+R C +G LG G HM ELRR R
Sbjct: 136 RVRTIYYVNILE--IDGQDALFRIGCEAGTYIRKYCHDIGEALGCGAHMAELRRTRVADF 193
Query: 268 GENDNMVTMHDVMDA--QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
E++ + T+ DV DA W+ D DEA LR ++P+E + K++VV+D+ ++A+C+G
Sbjct: 194 TEDETLKTLQDVNDAYHYWIEDG--DEAPLRECVLPMERAASHLKKVVVRDSAIDALCHG 251
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L G+L+ I+ + + +MT KGE VA G + TT + G++ IK+V M+
Sbjct: 252 ADLAAGGILQLSEGIKRKDTLAVMTLKGELVAAGESLATTTEIDQAGSGIMVNIKKVFME 311
Query: 386 RDTYPRKW 393
TYP W
Sbjct: 312 PGTYPMMW 319
>gi|352683031|ref|YP_004893555.1| tRNA pseudouridine synthase B [Thermoproteus tenax Kra 1]
gi|350275830|emb|CCC82477.1| tRNA pseudouridine synthase B [Thermoproteus tenax Kra 1]
Length = 338
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/320 (45%), Positives = 197/320 (61%), Gaps = 5/320 (1%)
Query: 75 LNVRTGHYTPLPN-GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGH 133
+ V+T + T P G P RP+ +YIRY + LDKP PSSHE VAW+KRIL VE GH
Sbjct: 12 IYVKTPNETTDPQWGRPPADRPIEEYIRYSFVVLDKPRGPSSHETVAWLKRILNVEVAGH 71
Query: 134 SGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAV 193
SGTLDP V+G L V I T+ + + A K YV VA+ H V D AK+ L TGA+
Sbjct: 72 SGTLDPNVSGVLPVAIAEGTKALMALSRADKTYVAVAKFHGDV-DEAKLREVLAYFTGAI 130
Query: 194 FQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVG 253
+QRPPL SAVKRQLR+R +Y +LLE +D + + EAGTY R + +G +LGV
Sbjct: 131 YQRPPLRSAVKRQLRVRHVYSLELLE--LDGRYALLRMHVEAGTYARKLIHDIGEVLGVS 188
Query: 254 GHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLV 313
+M+ELRRV G E + T+ D+ DA +++ NY D+ LR+++ P+E + ++
Sbjct: 189 ANMRELRRVGVGCFTEEEAF-TLQDIADAVYIWRNYGDDTVLRQIVKPIEEIARGVAKIW 247
Query: 314 VKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDH 373
+KD V+A+C+GA L PG+++FE + G+ V T KGE VALG A M++ + D
Sbjct: 248 IKDGAVDAVCHGAPLAAPGVVKFEEPFQRGDLVAYFTLKGELVALGRALMSSDELKRADK 307
Query: 374 GVVARIKRVVMDRDTYPRKW 393
G+VAR RVVM TYP W
Sbjct: 308 GLVARTDRVVMRPGTYPSIW 327
>gi|15678063|ref|NP_275177.1| H/ACA RNA-protein complex component Cbf5p [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915180|sp|O26140.1|TRUB_METTH RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|2621069|gb|AAB84541.1| centromere/microtubule-binding protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 324
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 194/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R + +I G++NLDKP+ P+SH+V +W++ +L VEK GH GTLDPKVTG L +
Sbjct: 22 GCPPAERDIEAHISMGVVNLDKPSGPTSHQVDSWVRDMLHVEKVGHGGTLDPKVTGVLPL 81
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
IDRATR+++ A KEYVC+ R+H +V D ++ L G +FQ PPL SAVKR L
Sbjct: 82 GIDRATRVMQLLLEAPKEYVCLMRVHREV-DEERIREVLGEFQGKIFQIPPLKSAVKRDL 140
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIY +LE VD V+F I+CEAGTYVR C +G LG G HM ELRR G
Sbjct: 141 RVRTIYRVDILE--VDGQDVLFRIACEAGTYVRKYCHDVGEALGAGAHMAELRRTAVGPF 198
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + +VT+HD+ DA + DE +LR I+P+E + R+V+ D+ V+AIC+GA
Sbjct: 199 TE-EGLVTLHDLKDAYQFWVEDGDETFLRECILPMEFAVGHLPRVVILDSAVDAICHGAD 257
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ +++I G+ V +MT KGE V +G A M+ +A D G+V ++V M+
Sbjct: 258 LARGGIAGLDDNIAWGDTVAIMTLKGELVGVGEASMSALDIAAADGGLVIETRKVFMEPG 317
Query: 388 TYPRKW 393
TYPR W
Sbjct: 318 TYPRMW 323
>gi|198435753|ref|XP_002131872.1| PREDICTED: dyskerin [Ciona intestinalis]
Length = 627
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/208 (58%), Positives = 167/208 (80%), Gaps = 3/208 (1%)
Query: 255 HMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVV 314
MQELRRVRSGI+ END++VTMHDV+DAQ+ D+++DE +LRRVI PLE LL S+KR+++
Sbjct: 328 QMQELRRVRSGIMSENDDLVTMHDVLDAQYQLDHHKDETHLRRVISPLEKLLVSHKRIIL 387
Query: 315 KDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHG 374
KD+ VNAICYGAK+++PG+LR+E+ IEV +E+V++TTKGEA+ L IA MTTAV++TCDHG
Sbjct: 388 KDSAVNAICYGAKILLPGVLRYEDGIEVNQEIVIITTKGEAICLAIALMTTAVISTCDHG 447
Query: 375 VVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPG 434
+VA+IKRV+M+RDTYPRKWGLGP+AS+KK +I +G L K+GK NEKTP+++ P
Sbjct: 448 IVAKIKRVIMERDTYPRKWGLGPKASLKKSMIKKGLLGKYGKPNEKTPKDYLEGN--PDF 505
Query: 435 GDSVVASLAAAAEQTVAEKETAGVKKRK 462
+ V ++ E + TAGVK+++
Sbjct: 506 SLTDVGTIVKTPE-AAEDISTAGVKRKR 532
>gi|84489672|ref|YP_447904.1| H/ACA RNA-protein complex component Cbf5p [Methanosphaera
stadtmanae DSM 3091]
gi|84372991|gb|ABC57261.1| TruB [Methanosphaera stadtmanae DSM 3091]
Length = 321
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 191/306 (62%), Gaps = 2/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + ++I GIIN+DKP+ P+SHEV W+K I+ V+KTGH GTLDPKVTG L V
Sbjct: 17 GCHPRNRTIEEHINKGIINIDKPSGPTSHEVDVWLKDIMHVDKTGHGGTLDPKVTGVLPV 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ AT+ + + KEYVC+ RLH V D + L+ TG ++Q PP+ SAVKR+L
Sbjct: 77 ALNTATKSLSLLLLSPKEYVCLMRLHKPV-DEEDIISILDEFTGKIYQIPPVKSAVKREL 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIYE KLLE D V+F I+C++GTY+R C +G LG G HM ELRR +G
Sbjct: 136 RVRTIYEVKLLEIR-DNQDVLFRITCQSGTYIRKYCHDIGEALGCGAHMAELRRTMAGSF 194
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E+D + T+ DV DA + Y DE LR++I P+E K++ VKDT V++IC+GA
Sbjct: 195 LEDDTLTTLQDVTDAYYFYKEDGDETLLRKLIQPMEHTTKYVKKIYVKDTAVDSICHGAN 254
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+++ +N I V +MT K E +A+G +T + D ++ I++V + +
Sbjct: 255 LASSGVVKLDNQIHENNTVAVMTLKEELLAIGTCMYSTNDIINSDTKIIVDIQKVFILPN 314
Query: 388 TYPRKW 393
TYP+ W
Sbjct: 315 TYPKMW 320
>gi|304314283|ref|YP_003849430.1| pseudouridine synthase B [Methanothermobacter marburgensis str.
Marburg]
gi|302587742|gb|ADL58117.1| predicted pseudouridine synthase B [Methanothermobacter
marburgensis str. Marburg]
Length = 322
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 195/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R + +I +G++NLDKP+ P+SH+V AW++ +L EK GH GTLDPKVTG L +
Sbjct: 17 GCPPHERDIETHISHGVVNLDKPSGPTSHQVDAWVRDMLHAEKVGHGGTLDPKVTGVLPL 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I+RATR+++ A KEYVC+ R+H +V D ++ L G +FQ PPL SAVKR+L
Sbjct: 77 GINRATRVMQLLLEAPKEYVCLMRVHREV-DEDRIREVLGEFQGKIFQIPPLKSAVKREL 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIY+ +LE +D V+F I+CEAGTYVR C +G LG G HM ELRR R G
Sbjct: 136 RVRTIYDVNILE--IDGQDVLFRIACEAGTYVRKYCHDVGEALGTGAHMAELRRTRVGPF 193
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + +VT+HD+ DA + DE +LR +P+E ++ R V+ D+ V+A+C+GA
Sbjct: 194 TE-EGLVTLHDLKDAYQFWVEDGDERFLRECTLPMEFAVSHLPRAVILDSAVDAVCHGAD 252
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ +++I+ G+ V +MT KGE VA+G A M + + D G+V +V M
Sbjct: 253 LARGGIAGLDDNIKKGDTVAVMTLKGELVAVGEALMPSLDIVAADSGLVIETDKVFMKPG 312
Query: 388 TYPRKW 393
TYPR W
Sbjct: 313 TYPRMW 318
>gi|156937715|ref|YP_001435511.1| rRNA pseudouridine synthase [Ignicoccus hospitalis KIN4/I]
gi|156566699|gb|ABU82104.1| putative rRNA pseudouridine synthase [Ignicoccus hospitalis KIN4/I]
Length = 349
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 199/306 (65%), Gaps = 1/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR + + + G++NLDKP P+SHEVVAWIKR+ +E+ GH GTLDPKVTG L V
Sbjct: 34 GKEPWKRDVKELVELGVVNLDKPPGPTSHEVVAWIKRMFGLERAGHGGTLDPKVTGVLPV 93
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ AT+++ +GKEYV V + HD V + +V L+ L G ++QRPPL S+VKRQL
Sbjct: 94 ALAEATKVIHYVMLSGKEYVMVIQFHDAVKE-EEVIENLKYLVGEIYQRPPLRSSVKRQL 152
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R + +Y +LE+ +R + + + E+GTY+R + LGL++G G HM+ELRR RSG
Sbjct: 153 RTKKVYYIHVLEFWPERRMALVRVGSESGTYMRKLAHDLGLLVGTGAHMRELRRTRSGPF 212
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E+ N+V M D+ +A++LYDNY D++ L++ IMP EV ++++KD V+A+ +GA
Sbjct: 213 HEDWNLVRMQDLSEAKFLYDNYGDDSLLKKYIMPCEVATCHMPKIMIKDGAVDAVAHGAN 272
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ I G+ ++++ G+ V +++ KGE VA+ A +++ + G VA+ KRV+M
Sbjct: 273 VSIRGVAALTDNMKKGDVVAVVSLKGELVAIAQALVSSQEALKMEKGWVAKTKRVIMKPG 332
Query: 388 TYPRKW 393
TYP W
Sbjct: 333 TYPDVW 338
>gi|118431292|ref|NP_147652.2| H/ACA RNA-protein complex component Cbf5p [Aeropyrum pernix K1]
gi|152031715|sp|Q9YDC3.2|TRUB_AERPE RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|109715686|dbj|BAE96920.1| Cbf5 [Aeropyrum pernix K1]
gi|116062614|dbj|BAA79974.2| small nucleolar RNP protein Cbf5 [Aeropyrum pernix K1]
Length = 354
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 194/309 (62%), Gaps = 8/309 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
GY P +RPL Y+RYG+I +DKP P+SHEVVAWIKR+L V + GH GTLDPKVTG L V
Sbjct: 42 GYLPHERPLDVYLRYGMIVVDKPPGPTSHEVVAWIKRMLGVSRAGHGGTLDPKVTGVLPV 101
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++R TR++ + + KEYVCV +LH V + ++ L+ G ++Q+PPL S+VKR L
Sbjct: 102 ALERMTRIIGTVMHSSKEYVCVMQLHRPVEE-DRLREVLKLFEGEIYQKPPLRSSVKRAL 160
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R ++ +LLEY L + CEAGTY+R +C +GL+LGVG HM+ELRR+R+G
Sbjct: 161 RTRRVFRIELLEYTGKYAL--LRVDCEAGTYMRKLCWDIGLVLGVGAHMRELRRIRTGPF 218
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEA---YLRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
E+ ++ D D + +R+E LRRV++P E + +++V+D+ V ++ +
Sbjct: 219 SEDSGLMVRLD--DVAYAVIRWREEGKDDLLRRVVIPGEYSVCHIPKVLVRDSAVESLTH 276
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
GA+L PG+ E +E G V LMT KGE + LG A + M + G+V R++M
Sbjct: 277 GAQLAAPGVAAVEEGVEKGGMVALMTLKGELIGLGKALASAQEMLEAERGIVVSPTRIIM 336
Query: 385 DRDTYPRKW 393
+R YPR W
Sbjct: 337 ERGLYPRMW 345
>gi|363548482|sp|Q975L5.2|TRUB_SULTO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|109715688|dbj|BAE96921.1| Cbf5 [Sulfolobus tokodaii]
gi|342306177|dbj|BAK54266.1| box H/ACA sRNP component Cbf5 [Sulfolobus tokodaii str. 7]
Length = 337
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 213/347 (61%), Gaps = 19/347 (5%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNY-DRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
DFI K SF NY + N+ YT GY KRP+ I+ IIN
Sbjct: 5 DFIYKIDSFC-------------NYSNNWNIIQDSYTNEKYGYFADKRPIEVLIKNSIIN 51
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
DKP P+SHEV WIK++ +V K GH GTLDPKVTG L + ++ AT+L+ +GKEY
Sbjct: 52 ADKPPGPTSHEVAYWIKQMFKVSKAGHGGTLDPKVTGVLPIGLENATKLMSYISSSGKEY 111
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ ++H ++ ++ + + G ++Q+PP+ S+VKR+ R + IY+ ++L D D+
Sbjct: 112 VCLMQVHCDF-NIDELKQIISKFIGIIYQKPPVRSSVKRRTRKKKIYDIEIL--DTDKRF 168
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
++ IS + GTY+R +C +G+ILG G HM+ELRR+RSGI E N+VT+ ++ +A +++
Sbjct: 169 ILLRISSDPGTYMRKLCHDIGVILGCGAHMRELRRIRSGIFTEK-NLVTLQEISEALYMW 227
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
N +DE+ LR++++P+E ++++ D V+AI YGA L PG++ ++ V + V
Sbjct: 228 KNCKDESDLRKILLPMEYATCGMPKILIDDNAVDAISYGAMLTAPGIVAYQR-FRVKDTV 286
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
++T KGE VA+G A++ + + G+V + KRV+M RD YPR W
Sbjct: 287 AILTLKGELVAIGEADVDSQKLVDMKKGIVVKPKRVLMPRDIYPRSW 333
>gi|307595999|ref|YP_003902316.1| rRNA pseudouridine synthase [Vulcanisaeta distributa DSM 14429]
gi|307551200|gb|ADN51265.1| rRNA pseudouridine synthase [Vulcanisaeta distributa DSM 14429]
Length = 351
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 195/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KRP+ Y++YG + +DKP P+SHEV AW+K++L +++ GHSGTLDP+V+G L +
Sbjct: 29 GIPPEKRPMDLYLKYGFVIIDKPRGPTSHEVAAWVKKMLNLDRAGHSGTLDPRVSGVLPI 88
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ +T+ + + KEY+ V +LH V D K+ L TGA++QRPPL SAVKRQL
Sbjct: 89 ALGESTKAMPAINTLDKEYIMVMKLHGDVDD-EKLRAVLREFTGAIYQRPPLRSAVKRQL 147
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R++ +YE +LLE D V+ ++ E+GTY R + +G +LG+G +M+ELRR R G
Sbjct: 148 RVKHVYELELLERD--GKYVLIRMNVESGTYARKLAYDIGEVLGIGANMRELRRTRVGCF 205
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + VT+ D+ DA LY +Y E LR + P+E ++ ++ ++D+ V+AIC+GA
Sbjct: 206 TEKEA-VTLQDLKDAYTLYKDYGVEDLLRTYVKPVEYMVRHLPKVWIRDSAVDAICHGAA 264
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ N+I G V +MT K E VALG AEMT+ + G+ + RVVM +
Sbjct: 265 LAVPGIVKLTNNIGKGSLVAIMTLKNELVALGYAEMTSDEIMKAQRGIAVKTTRVVMKKG 324
Query: 388 TYPRKW 393
TYP W
Sbjct: 325 TYPPMW 330
>gi|218884458|ref|YP_002428840.1| H/ACA RNA-protein complex component Cbf5p [Desulfurococcus
kamchatkensis 1221n]
gi|218766074|gb|ACL11473.1| tRNA pseudouridine synthase [Desulfurococcus kamchatkensis 1221n]
Length = 345
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 201/307 (65%), Gaps = 3/307 (0%)
Query: 87 NGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 146
+G P +R + D+I YG+INLDKP P+SHEVVAW+K++ +EK GH GTLDPKVTG L
Sbjct: 36 HGVLPYERKVNDHINYGVINLDKPPGPTSHEVVAWVKKMFNLEKAGHGGTLDPKVTGVLP 95
Query: 147 VCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ 206
+ + +T+++ + + KEYV V +LH + + V +E G ++Q+PPL S+VKR
Sbjct: 96 IGLANSTKVIGNVIHSVKEYVMVIQLHGDARE-SSVKMVVEYFKGDIYQKPPLRSSVKRS 154
Query: 207 LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGI 266
+R+R IYE +LLE DR ++V +S + GTY+R + +GL+LG G HM+ELRR R+G
Sbjct: 155 IRVRRIYEIELLEIR-DRFILVRVLS-DPGTYMRKLAHDIGLMLGTGAHMRELRRTRTGP 212
Query: 267 LGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGA 326
E++ +V + D+ +A L+ + DE Y+RR+I+P+E + ++++ DT V+AI +GA
Sbjct: 213 YREDETLVRLQDISEALALWRSSGDERYIRRIILPVETSIAHLPKIMILDTAVDAIAHGA 272
Query: 327 KLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDR 386
L +PG+ R +++E + V ++T KGE VALG A + +A GVVAR +RVVM
Sbjct: 273 NLAVPGIARLTSNVERNKTVAILTLKGELVALGTALYSAKEIAGMKKGVVARTRRVVMPT 332
Query: 387 DTYPRKW 393
YP W
Sbjct: 333 GIYPPAW 339
>gi|325967846|ref|YP_004244038.1| rRNA pseudouridine synthase [Vulcanisaeta moutnovskia 768-28]
gi|323707049|gb|ADY00536.1| rRNA pseudouridine synthase [Vulcanisaeta moutnovskia 768-28]
Length = 348
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 206/333 (61%), Gaps = 13/333 (3%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KRP+ Y++YG + +DKP P+SHEV AWIK++L +++ GHSGTLDP V+G L +
Sbjct: 26 GVPPEKRPMDLYLKYGFVVIDKPRGPTSHEVAAWIKKMLNLDRAGHSGTLDPGVSGVLPI 85
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ +T+ + + KEYV V ++H V D K+ L TGA++QRPPL SAVKRQL
Sbjct: 86 ALGESTKAMPAINTLDKEYVMVMKMHGDVND-EKLRAVLREFTGAIYQRPPLRSAVKRQL 144
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R++ +YE +LLE D L+ ++ E+GTY R + +G +LGVG +M+ELRR+R G
Sbjct: 145 RVKHVYELELLERDGKYALIR--MNVESGTYARKLAYDIGEVLGVGANMRELRRIRVGCF 202
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + +T+ D+ DA LY +Y E LR + P+E ++ ++ ++D+ V+A+C+GA
Sbjct: 203 TEKET-ITLQDLKDAYTLYRDYGIEDLLRTYVKPVEYMVRHLPKVWIRDSAVDAVCHGAA 261
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ N+I+ +MT K E VALG AEMT+ + G+ + RV+M +
Sbjct: 262 LAVPGIVKLTNNIKRKSLTAIMTLKNELVALGYAEMTSDEIMNAQRGIAIKTTRVIMKKG 321
Query: 388 TYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
TYP W KK AEGK+++ + N K
Sbjct: 322 TYPSMW---------KKKKAEGKVEEKQQDNTK 345
>gi|126458682|ref|YP_001054960.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum calidifontis
JCM 11548]
gi|189036565|sp|A3MS77.1|TRUB_PYRCJ RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|126248403|gb|ABO07494.1| tRNA pseudouridine synthase B [Pyrobaculum calidifontis JCM 11548]
Length = 333
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R ++IRY + LDKP P+SHEV AW+K+IL VE+ GHSGTLDPKV+G L V
Sbjct: 21 GKPPSSRSAEEHIRYSFLILDKPRGPTSHEVAAWVKKILGVERAGHSGTLDPKVSGVLPV 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + A K Y+ VA+ H V DV + R L+ L G ++Q+PPL SAVKRQL
Sbjct: 81 AVAEGTKVLMALSRADKVYIAVAKFHGDV-DVENLRRVLQELQGEIYQKPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LLE +D V + EAGTY R + LG ILGVG +M+ELRRV
Sbjct: 140 RTRRVYSLELLE--LDGRYAVLKMHVEAGTYARKLIHDLGEILGVGANMRELRRVAVSCF 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ D+ DA +++ Y D+ YLRRV++P+E + ++ V+D+ V+A+C GA
Sbjct: 198 TE-DEAVTLQDLADAYYIWKKYGDDTYLRRVLLPIEEIARPLPKIWVRDSAVDALCNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE+ G+ V T KGE + +G A + + + + G+VAR RVVM R
Sbjct: 257 LAAPGVAKFEHPFSRGDLVAYFTLKGELIGIGRALVDSEEVKKMEKGLVARTDRVVMPRG 316
Query: 388 TYPRKW 393
TYP W
Sbjct: 317 TYPPMW 322
>gi|170291189|ref|YP_001738005.1| pseudouridylate synthase [Candidatus Korarchaeum cryptofilum OPF8]
gi|226708669|sp|B1L793.1|TRUB_KORCO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|170175269|gb|ACB08322.1| Pseudouridylate synthase [Candidatus Korarchaeum cryptofilum OPF8]
Length = 325
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 196/319 (61%), Gaps = 11/319 (3%)
Query: 82 YTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVE-KTGHSGTLDPK 140
Y P P GY P +RP+ Y+ +G+I LDKP PSSHEV +KRIL K GH GTLDPK
Sbjct: 14 YEPGPYGYRPQERPIFLYLDHGLIILDKPKGPSSHEVTERVKRILEYPGKVGHCGTLDPK 73
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLI 200
V+G L + + AT+L K G KEYV LH VP + ++ AL+ TG +FQRPP+
Sbjct: 74 VSGVLPIVLGNATKLSKFISGYDKEYVGTLYLHGDVP-IDELKGALDKFTGPIFQRPPVK 132
Query: 201 SAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 260
SAVKR LR+R +Y +LL + H + + E+GTY+R + +G LGVGG M++LR
Sbjct: 133 SAVKRSLRVRRVYSIELLSSEGRFHKL--RVRVESGTYIRKLFFDIGEFLGVGGSMRDLR 190
Query: 261 RVRSGILGENDNMVTMHDVMDAQWLYDNYR---DEAYLRRVIMPLEVLLTSYKRLVVKDT 317
R+RSGI E D VT+ D+ DA YD++R DE+ +R+VI+PLE + ++ VKD+
Sbjct: 191 RIRSGIFTEKD-CVTLEDIKDA---YDSWRESGDESKIRKVILPLEEAVRHLPKIYVKDS 246
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
V ++ +GA L + G+ I+ G V LMT KGE +A+G A M M + D GV A
Sbjct: 247 AVASLTHGASLKVKGICSLSRGIKKGSIVALMTLKGELIAIGRALMDFDEMLSADSGVAA 306
Query: 378 RIKRVVMDRDTYPRKWGLG 396
I+RV+M RD YP W G
Sbjct: 307 SIERVIMPRDLYPPMWKTG 325
>gi|333911253|ref|YP_004484986.1| tRNA pseudouridine synthase B [Methanotorris igneus Kol 5]
gi|333751842|gb|AEF96921.1| tRNA pseudouridine synthase B [Methanotorris igneus Kol 5]
Length = 338
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 194/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + D ++ G++ +DKP+ P+SHEV W+K+IL ++K GH GTLDPKVTG L +
Sbjct: 33 GCNPYERKIEDLLKSGVVVIDKPSGPTSHEVSTWVKKILNLKKAGHGGTLDPKVTGVLPI 92
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ AT+ + KEY+C+ LH + D K+ + G + QRPPL +AVKR L
Sbjct: 93 ALENATKCIPMWHIPPKEYICLMHLH-RDADEEKIREIFKEFEGKILQRPPLKAAVKRSL 151
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR I++ ++L D+D ++F + C++GTY+R + +G LG HMQELRRV+SG+
Sbjct: 152 RIRKIHKLEIL--DIDGRDILFRVKCQSGTYIRKLVDDMGEALGTSAHMQELRRVKSGVF 209
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
END V + D++DA + DE LRR+I P+E L K++VVKD+ V+AIC+GA
Sbjct: 210 EEND-AVYLQDLVDAYHFWKEDGDEEELRRIIKPIEYGLRHLKKVVVKDSAVDAICHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ + G+ + I GE V++ T KGEA+ +G A M T + + GV ++R+ M+ +
Sbjct: 269 VYVKGISKLSKGIGKGEIVLVETLKGEAIGVGKALMNTKEILKANEGVAVDVERIYMEPN 328
Query: 388 TYPRKW 393
TYPR W
Sbjct: 329 TYPRMW 334
>gi|374636750|ref|ZP_09708303.1| rRNA pseudouridine synthase [Methanotorris formicicus Mc-S-70]
gi|373558011|gb|EHP84380.1| rRNA pseudouridine synthase [Methanotorris formicicus Mc-S-70]
Length = 345
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 194/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + D ++ G++ +DKP+ P+SHEV W+K+IL ++K GH GTLDPKVTG L +
Sbjct: 40 GCNPYEREMDDLLKNGVVVIDKPSGPTSHEVSTWVKKILNLKKAGHGGTLDPKVTGVLPI 99
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ T+ + KEY+C+ LH + D K+ + + G + QRPPL +AVKR L
Sbjct: 100 ALENTTKCIPMWHIPPKEYICLMHLH-RDADEEKIKKIFKEFEGKILQRPPLKAAVKRSL 158
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR I++ ++L D+D ++F + C++GTY+R + +G LG HMQELRRV+SG+
Sbjct: 159 RIRKIHKLEIL--DIDGRDILFRVKCQSGTYIRKLVDDMGEALGTSAHMQELRRVKSGVF 216
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
END V + D++DA + D+ LRR+I P+E L K++VVKD+ V+AIC+GA
Sbjct: 217 EEND-AVYLQDLVDAYHFWKEDGDKEELRRIIKPIEYGLRHLKKVVVKDSAVDAICHGAD 275
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ + G+ + I GE V++ T KGEA+ +G A M T + D GV ++R+ M+ +
Sbjct: 276 VYVKGISKLSKGIGKGEVVLVETLKGEAIGVGKALMNTKEILKADEGVAVDVERIYMEPN 335
Query: 388 TYPRKW 393
TYPR W
Sbjct: 336 TYPRMW 341
>gi|159040742|ref|YP_001539994.1| H/ACA RNA-protein complex component Cbf5p [Caldivirga
maquilingensis IC-167]
gi|157919577|gb|ABW01004.1| putative rRNA pseudouridine synthase [Caldivirga maquilingensis
IC-167]
Length = 335
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 194/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + +YI YG I LDKP P+S EVVAW+K++L + K GHSGTLDP V+G L +
Sbjct: 26 GVNPYERRIEEYINYGFIILDKPRGPTSSEVVAWVKKLLNISKAGHSGTLDPGVSGVLPI 85
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ +T++++ KEYV V LH V D +V TG ++QRPPL SAVKR++
Sbjct: 86 ALGDSTKVLQGISNVDKEYVGVMLLHSTV-DQERVKAVFREFTGKIYQRPPLKSAVKRRI 144
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R++T+Y ++E+D R+ V+F E+GTY+R +C +G +LGVG M+ELRR R G
Sbjct: 145 RVKTVYSLDIMEFD-GRY-VLFKADVESGTYIRKLCYDIGEVLGVGASMRELRRTRVGCF 202
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E +N V ++ + +A L+ +Y DE+ LRR+I P+E ++ R+ ++D+ V+AI +GA
Sbjct: 203 RE-ENTVNLNTLREAYSLWRDYGDESLLRRLIRPVEEMVIHLPRIYIRDSAVDAIAHGAS 261
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ + E I G+ V LMT KGE VAL + +T + + G+VA+ RV+M R
Sbjct: 262 LAAPGVAKVEEGIRSGQLVALMTLKGELVALAESTASTNEILNMNRGIVAKPTRVIMPRG 321
Query: 388 TYPRKW 393
YP W
Sbjct: 322 VYPSTW 327
>gi|18312233|ref|NP_558900.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum aerophilum
str. IM2]
gi|37089567|sp|Q8ZYB3.1|TRUB_PYRAE RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|18159675|gb|AAL63082.1| tRNA pseudouridine synthase B [Pyrobaculum aerophilum str. IM2]
Length = 333
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R +YI+Y ++ LDKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSQRSTEEYIKYSLVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I T+++ + + K YV VA+ H V D K+ L+ G ++Q+PPL SAVKRQL
Sbjct: 81 AIAEGTKVLMALSRSDKVYVAVAKFHGDV-DEDKLRAVLQEFQGVIYQKPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y LLE +D V + EAGTY R + +G +LGVG +M+ELRR+
Sbjct: 140 RTRRVYSLDLLE--LDGRYAVIKMHVEAGTYARKIIHDIGEVLGVGANMRELRRIAVSCY 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ D+ DA +++ +Y D+ YLRRV++P+E + ++ V+D+ V+AIC GA
Sbjct: 198 TE-DEAVTLQDIADAYYIWKHYGDDTYLRRVLLPIEEIARHLPKIWVRDSAVDAICNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE G+ V + T KGE + +G A + + + + G+VAR RVVM R
Sbjct: 257 LAAPGISKFETPFSKGDLVAMFTLKGELIGIGRALVGSEEVKKMERGLVARTDRVVMRRG 316
Query: 388 TYPRKW 393
TYP W
Sbjct: 317 TYPAMW 322
>gi|167043025|gb|ABZ07737.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine microorganism HF4000_ANIW141A21]
Length = 338
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 187/306 (61%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + D + YG+I DKP+ P+SHEVVAW++ +L + K GHSGTLDP VTG L +
Sbjct: 20 GSDPHSRKMKDLLDYGLICADKPSGPTSHEVVAWVRLMLNIGKAGHSGTLDPMVTGLLPI 79
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+ + + KEY+ +ARLH V D K+AR ++ TG ++Q PP SAVKR
Sbjct: 80 GLGHGTKALTTLLLGPKEYIAIARLHSPVDD-PKLARIMKEFTGEIYQTPPQRSAVKRAR 138
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R RTIY L+E +L++F I C+AGTYVR + +G ILG G M ELRR R L
Sbjct: 139 RTRTIYALDLVERQ--GNLLIFRILCQAGTYVRKLVYDMGEILGPGATMIELRRTRVSNL 196
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
+ +V +HD+ DA + +E+ LRRV+ P+E LT+ K ++++D+ + AIC GA+
Sbjct: 197 NDEKGLVRLHDLFDAVARFKESGEESGLRRVVSPIEASLTNLKSMIIRDSAIEAICQGAQ 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L IPG+L D+ G+ + L + KGE VA+G A+M+ + + G+ RV+M
Sbjct: 257 LAIPGILGVTGDMAPGDNLALYSQKGEVVAIGKAQMSINDIRDLEKGIAFLTDRVIMKAG 316
Query: 388 TYPRKW 393
TYP+ W
Sbjct: 317 TYPKMW 322
>gi|150399736|ref|YP_001323503.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus vannielii
SB]
gi|150012439|gb|ABR54891.1| putative rRNA pseudouridine synthase [Methanococcus vannielii SB]
Length = 359
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 190/307 (61%), Gaps = 4/307 (1%)
Query: 87 NGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 146
+G P KR + + G++ +DKP+ P+SHEV AW++ +L++EK GH GTLDPKVTG L
Sbjct: 17 HGCEPYKRDIKTLLNTGVVVIDKPSGPTSHEVSAWVRNMLKLEKAGHGGTLDPKVTGALP 76
Query: 147 VCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ 206
+ + AT+ V KEYVC+ +LHD + + R TG + QRPPL +AVKR
Sbjct: 77 IALGGATKCVSIWHIPPKEYVCLMQLHDDA-KLEDIKRVFNEFTGRIHQRPPLKAAVKRN 135
Query: 207 LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGI 266
LRIR IYE ++LE+ +R V+F C++GTY+RT+ +G LG HMQELRR SG
Sbjct: 136 LRIRKIYEIEILEH-FERK-VLFKTRCQSGTYIRTLVSDVGEALGTSAHMQELRRTISGP 193
Query: 267 LGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGA 326
EN+ V + D++DA + +E LR+++ PLE L K++V+KD+ V+A+C+GA
Sbjct: 194 FNENE-AVYLQDLLDAYIFWKEDGNEEELRKLVKPLEYGLQYLKKVVIKDSAVDAVCHGA 252
Query: 327 KLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDR 386
+L G+ + E I E V++ T KGEAVA+G M T M + VV I+RV+M+
Sbjct: 253 QLYASGISKIEKGIGTDELVLIETLKGEAVAVGKPLMNTKDMLKAEEDVVVDIERVIMET 312
Query: 387 DTYPRKW 393
YPR W
Sbjct: 313 GIYPRMW 319
>gi|291232967|ref|XP_002736425.1| PREDICTED: dyskerin-like, partial [Saccoglossus kowalevskii]
Length = 155
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/154 (74%), Positives = 135/154 (87%)
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVCV RLH + + AK+AR +E LTGAVFQRPPLISAVKRQLR+RTIYESKLLEYD +
Sbjct: 1 KEYVCVVRLHSAIENEAKLARVIETLTGAVFQRPPLISAVKRQLRVRTIYESKLLEYDEE 60
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
RHL V WISCEAGTY+RT+CVH+GL+LGVGG M ELRRVRSGI E+DNMVTMHDVMDA+
Sbjct: 61 RHLGVVWISCEAGTYIRTLCVHMGLLLGVGGQMAELRRVRSGIQSESDNMVTMHDVMDAR 120
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
W +D+ +DE+YLRRV+ PLE LL S+KR+V+KD+
Sbjct: 121 WQHDHNKDESYLRRVVKPLEALLVSHKRIVLKDS 154
>gi|374327767|ref|YP_005085967.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum sp. 1860]
gi|356643036|gb|AET33715.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum sp. 1860]
Length = 330
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 193/312 (61%), Gaps = 4/312 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R ++IRY ++ LDKP PSSHEV AW+K+IL V++ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSQRSAEEHIRYSMVVLDKPRGPSSHEVAAWVKKILGVDRAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + + K YV VA+ H V D ++ L+ G ++Q+PPL SAVKRQL
Sbjct: 81 AVAEGTKVLMALSRSDKVYVAVAKFHGGV-DAERLRAVLQEFQGVIYQKPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LLE D R+ V+ + EAGTY R + +G +LGVG +M+ELRRV
Sbjct: 140 RTRHVYSLELLELD-GRYAVIK-MHVEAGTYARKIIHDIGEVLGVGANMRELRRVAVSCY 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ DV DA ++ Y D+ YLRRV++P+E ++ V+D+ V+A+C GA
Sbjct: 198 SE-DEAVTLQDVADAYHIWRRYGDDTYLRRVLLPIEEAARHLPKIWVRDSAVDALCNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE G+ V + T KGE + +G A +++ + D G+V R RVVM R
Sbjct: 257 LAAPGVSKFETPFSAGDLVAMFTLKGELIGVGRALVSSEEVKKMDRGLVVRTDRVVMRRG 316
Query: 388 TYPRKWGLGPRA 399
TYP W G RA
Sbjct: 317 TYPAMWKRGTRA 328
>gi|171184565|ref|YP_001793484.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum neutrophilum
V24Sta]
gi|226708675|sp|B1YA64.1|TRUB_THENV RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|170933777|gb|ACB39038.1| pseudouridylate synthase TruB domain protein [Pyrobaculum
neutrophilum V24Sta]
Length = 331
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R ++I+Y ++ LDKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSRRSAEEHIKYSLVLLDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + + K YV VA+ H V D K+ L G ++QRPPL SAVKRQL
Sbjct: 81 AVAEGTKVLLALSRSDKVYVAVAKFHGDV-DEGKLRAVLGEFQGIIYQRPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LLE D R+ V+ + EAGTY R + +G +LGVG +M+ELRRV
Sbjct: 140 RTRQVYSIELLELD-GRYAVIK-MHVEAGTYARKLIHDIGEVLGVGANMRELRRVAVSCY 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + VT+ DV DA +++ Y D+ YLRRV++P+E + ++ V+D+ V+A+C GA
Sbjct: 198 TEEET-VTLQDVADAYYIWRKYGDDTYLRRVLLPIEEIARHLPKIWVRDSAVDALCNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE GE V T KGE + +G A + + + + G+VAR RVVM R
Sbjct: 257 LAAPGVAKFEAPFSRGELVAYFTLKGELIGVGRALVDSEEVKKMEKGLVARTDRVVMKRG 316
Query: 388 TYPRKW 393
TYP W
Sbjct: 317 TYPPLW 322
>gi|297619799|ref|YP_003707904.1| rRNA pseudouridine synthase [Methanococcus voltae A3]
gi|297378776|gb|ADI36931.1| rRNA pseudouridine synthase [Methanococcus voltae A3]
Length = 336
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P R + + GI+ ++KP+ P+SHEV AW++ IL+V K GH GTLDPKVTG L +
Sbjct: 20 GTNPYNRDIKSLLETGIVIINKPSGPTSHEVSAWVRDILKVSKAGHGGTLDPKVTGALPI 79
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA----KVARALEALTGAVFQRPPLISAV 203
+ +T+ V KEYVC+ RLH + + ++ + G ++QRPPL ++V
Sbjct: 80 ALGNSTKCVPYWHIPPKEYVCIMRLHRDMKESKIGEKEILELFDNFIGKMYQRPPLKASV 139
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 263
R+LR+R IYE KL+E + + + V+FW+ C++GTY+R + G LGV HMQELRRV+
Sbjct: 140 ARKLRVRKIYELKLIEINEEINSVLFWVRCQSGTYLRKLVDDFGEALGVSAHMQELRRVK 199
Query: 264 SGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAIC 323
SG E + + + D++D + + +E Y+R +I P+E L +++++KD+ VNAIC
Sbjct: 200 SGPFFEEE-AIYLQDLVDEYFYWKETGNEEYIREIIKPVEYGLQHLQKVIIKDSAVNAIC 258
Query: 324 YGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
+GA L G+ + E I E V++ T KGEAVA+G T + D +V I+RV+
Sbjct: 259 HGANLYANGISKIEKGIGPEEIVLVETLKGEAVAIGKTLANTKKILKSDEELVIDIERVI 318
Query: 384 MDRDTYPRKW 393
MD++ YP+ W
Sbjct: 319 MDKNIYPKMW 328
>gi|119872635|ref|YP_930642.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum islandicum
DSM 4184]
gi|189036566|sp|A1RTL7.1|TRUB_PYRIL RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|119674043|gb|ABL88299.1| tRNA pseudouridine synthase B [Pyrobaculum islandicum DSM 4184]
Length = 328
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 185/306 (60%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR +YIRY ++ +DKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSKRTTEEYIRYSLVLIDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+ + + + K YV VA+ H V D K+ L G ++Q+PPL S+VKRQL
Sbjct: 81 AVAEGTKALLALSRSDKVYVAVAKFHGDV-DEEKLKAVLNEFQGVIYQKPPLRSSVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LLE +D V + EAGTY R + +G +LGVG +M+ELRR+
Sbjct: 140 RTRHVYSLELLE--LDGRYAVIKMHVEAGTYARKLIHDIGEVLGVGANMRELRRIAVSCY 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D V + DV DA +++ Y D+ YLRRV++P+E + ++ V+D+ V+A+C GA
Sbjct: 198 TE-DETVALQDVADAYYIWRRYGDDTYLRRVLLPIEEIARHLPKIWVRDSAVDALCNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+++FE GE V T K E + G A + + + G+VAR+ RV+M R
Sbjct: 257 LAAPGVVKFETPFSKGELVAFFTLKDELIGFGRALVESEEAKKMERGLVARVDRVIMRRG 316
Query: 388 TYPRKW 393
TYP W
Sbjct: 317 TYPPMW 322
>gi|327311510|ref|YP_004338407.1| H/ACA RNA-protein complex component Cbf5p [Thermoproteus uzoniensis
768-20]
gi|326947989|gb|AEA13095.1| H/ACA RNA-protein complex component Cbf5p [Thermoproteus uzoniensis
768-20]
Length = 334
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 188/306 (61%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G SP RP+ ++IRY ++ LDKP PSSHE VAW+K+IL V+ GHSGTLDP V+G L V
Sbjct: 22 GKSPGDRPVEEHIRYSLVILDKPRGPSSHEAVAWLKKILGVDVAGHSGTLDPNVSGVLPV 81
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + A K YV VA+ H V D ++ L TG ++QRPPL SAVKRQL
Sbjct: 82 AVAEGTKVLMALSRADKVYVAVAKFHGDV-DEERLKSVLARFTGEIYQRPPLRSAVKRQL 140
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LLE +D V + EAGTY R + +G +LGV +M+ELRRV
Sbjct: 141 RTRRVYSLELLE--LDGRYAVLRMHVEAGTYARKLIHDIGEVLGVSANMRELRRVAVACF 198
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + VT+ DV DA +++ NY D+ LR+V+ P+E + ++ +KD V+AIC+GA
Sbjct: 199 DERE-AVTLQDVADAVYVWRNYGDDTALRQVLKPIEEIARGLAKIWIKDGAVDAICHGAP 257
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+++FE G+ V T KGE V +G A +++ + + G+VAR RV+M
Sbjct: 258 LAAPGVVKFETPFNKGDLVAYFTLKGELVGVGRALVSSDDLKNMERGLVARTDRVLMKPG 317
Query: 388 TYPRKW 393
TYP W
Sbjct: 318 TYPATW 323
>gi|161527914|ref|YP_001581740.1| pseudouridylate synthase subunit TruB [Nitrosopumilus maritimus
SCM1]
gi|160339215|gb|ABX12302.1| pseudouridylate synthase TruB domain protein [Nitrosopumilus
maritimus SCM1]
Length = 332
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 191/307 (62%), Gaps = 3/307 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR + + YGII LDKP P+SHE VAW KRIL++ K GHSGTLDP+V+G L + + A
Sbjct: 27 KRTIEQLLNYGIILLDKPPGPTSHETVAWTKRILKLPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + R+H +P K+ +E+LTG ++Q+PP SAV RQ R RTI
Sbjct: 87 TKALGVLLFGPKEYHALGRVHS-LPSKEKLHEVIESLTGEIYQKPPQRSAVVRQTRTRTI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YE ++LE L++ + CEAGTY+R + LG ILG G M ELRR R E D
Sbjct: 146 YEFEVLEQK--ERLLLTRVLCEAGTYIRKLYYDLGEILGPGATMIELRRTRVDQFRETDG 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H++ +A L++ +D++ L+ +I P+E L+ K +V++D+ ++A+C+GA+L IPG
Sbjct: 204 LVTLHELANAFALWEEKKDDSKLKSMIQPVEHALSELKSVVIRDSAIDAMCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ + G+ V + T KGEAVAL A M+ + G KR++M +TYP+K
Sbjct: 264 ILQISPSLNKGDIVGIYTQKGEAVALAEATMSGQEIQDAVKGYAFETKRIIMAPNTYPKK 323
Query: 393 WGLGPRA 399
W P +
Sbjct: 324 WRTKPSS 330
>gi|145590354|ref|YP_001152356.1| H/ACA RNA-protein complex component Cbf5p [Pyrobaculum arsenaticum
DSM 13514]
gi|189036564|sp|A4WH37.1|TRUB_PYRAR RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|145282122|gb|ABP49704.1| tRNA pseudouridine synthase B [Pyrobaculum arsenaticum DSM 13514]
Length = 331
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 192/313 (61%), Gaps = 4/313 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R +YIR+ + LDKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSQRTADEYIRHSFVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + + K YV VA+ H V D ++ L G ++Q+PPL SAVKRQL
Sbjct: 81 AVAEGTKVLMALSRSDKVYVAVAKFHGDV-DEERLRAVLREFQGEIYQKPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R ++ +LLE + R+ V+ + EAGTY R + +G +LGVG +M+ELRRV
Sbjct: 140 RTRRVFSLELLELE-GRYAVIK-MHVEAGTYARKIIHDIGEVLGVGANMRELRRVAVTCF 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ DV DA +++ Y D+ YLR V++P+E + ++ V+D+ V+A+C+GA
Sbjct: 198 TE-DEAVTLQDVADAYYIWKKYGDDTYLRSVLLPIEEIARHLPKIWVRDSAVDAVCHGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE G+ V + T KGE V +G A + + + + G V R RVVM R
Sbjct: 257 LAAPGISKFEVPFSKGDIVAMFTLKGELVGIGRALVDSEEVKKMERGAVVRTDRVVMRRG 316
Query: 388 TYPRKWGLGPRAS 400
TYP W G RA+
Sbjct: 317 TYPAMWKKGQRAA 329
>gi|407461931|ref|YP_006773248.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045553|gb|AFS80306.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosopumilus
koreensis AR1]
Length = 331
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 191/305 (62%), Gaps = 3/305 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR + + YGII LDKP P+SHE VAW KRIL++ K GHSGTLDP+V+G L + + A
Sbjct: 27 KRTIEQLLNYGIIILDKPPGPTSHETVAWTKRILKLPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + R+H +P K+ +E LTG ++Q+PP SAV RQ R RTI
Sbjct: 87 TKALGVLLFGPKEYHALGRVHS-LPSKEKLHEVIELLTGEIYQKPPQRSAVVRQTRTRTI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YE ++LE L++ + CEAGTY+R + LG ILG G M ELRR R E D
Sbjct: 146 YEFEVLEQK--ERLLLTRVLCEAGTYIRKLYYDLGEILGPGATMIELRRTRVDQFRETDG 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H++ +A L++ +D++ L+ +I P+E+ L+ K ++++D+ V+A+C+GA+L IPG
Sbjct: 204 LVTLHELANAFALWEEKKDDSKLKSMIKPVELALSELKSVIIRDSAVDAMCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ +++ G+ V + T KGEAVAL + M + G KR++M +TYP+K
Sbjct: 264 ILKISPNLKKGDIVGIYTQKGEAVALAESTMDEEEIRDATKGYAFETKRIIMAPNTYPKK 323
Query: 393 WGLGP 397
W P
Sbjct: 324 WRTKP 328
>gi|336121792|ref|YP_004576567.1| tRNA pseudouridine synthase B [Methanothermococcus okinawensis IH1]
gi|334856313|gb|AEH06789.1| tRNA pseudouridine synthase B [Methanothermococcus okinawensis IH1]
Length = 329
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 195/308 (63%), Gaps = 6/308 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G++P RP+ + ++YG++ +DKP+ P+SHEV +W+K+IL + GH+GTLDPKVTG L V
Sbjct: 16 GFNPYNRPIAELLQYGLVVIDKPSGPTSHEVSSWVKKILHLNLAGHAGTLDPKVTGVLPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ T+ ++ KEYVC+ LH + + R + G +FQRPPL +AVKR L
Sbjct: 76 ALENTTKCIQVWHMLPKEYVCLMHLHRDATE-EDIIRIFKEFEGRIFQRPPLKAAVKRSL 134
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR I++ +LLE +D V+F + C++GTY+RT+ +G LG HMQELRR +SG
Sbjct: 135 RIRKIHKLELLE--MDGRDVLFKVKCQSGTYIRTLAEDIGEALGTSAHMQELRRTKSGPF 192
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
GE + V + D+ DA + +E LR+++ P+E L K++V+KD+ V+AIC+GA
Sbjct: 193 GEEEA-VYLQDLTDAYVFWKEEGNEEELRKIVKPMEYGLRHLKKIVIKDSAVDAICHGAD 251
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT-AVMATCDH-GVVARIKRVVMD 385
+ + G+ + I + E V++ T KGEAVA+G A ++T ++ ++ + +RV+M
Sbjct: 252 VYLNGIAKLSKGIGIDEIVLIETLKGEAVAIGKALLSTKNILKETEYTNPIVDTERVLMK 311
Query: 386 RDTYPRKW 393
TYPR W
Sbjct: 312 PGTYPRMW 319
>gi|386876390|ref|ZP_10118508.1| putative rRNA pseudouridine synthase [Candidatus Nitrosopumilus
salaria BD31]
gi|386805797|gb|EIJ65298.1| putative rRNA pseudouridine synthase [Candidatus Nitrosopumilus
salaria BD31]
Length = 333
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 187/305 (61%), Gaps = 3/305 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR + + YGII LDKP P+SHE VAW KR+L++ K GHSGTLDP+V+G L + + A
Sbjct: 27 KRTIEQLLNYGIILLDKPPGPTSHETVAWTKRLLKLPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + R+H +P K+ +E G +FQ+PP SAV RQ R RTI
Sbjct: 87 TKALGVLLYGPKEYHALGRVHS-LPSKEKLNEVIEMFRGEIFQKPPQRSAVVRQTRTRTI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YE +LLE L++ I CEAGTYVR + +G ILG G M ELRR R E D
Sbjct: 146 YEFELLEQK--ERLLLTRILCEAGTYVRKLYYDIGEILGPGATMVELRRTRVDQFSEKDG 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H++ DA L++ +D + L ++I P+E L+ K +V++D+ V+A+C+GA+L IPG
Sbjct: 204 LVTLHELADAFALWEEKQDASKLMKMIKPVEYALSELKSVVIRDSAVDAMCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ +++ G+ V + T KGEAVAL A M+ + G R++M +TYP+K
Sbjct: 264 ILKISPNLKKGDIVGIYTQKGEAVALAEAAMSEEEIRDATKGYAFVTNRIIMAPNTYPKK 323
Query: 393 WGLGP 397
W P
Sbjct: 324 WRTKP 328
>gi|407464263|ref|YP_006775145.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosopumilus
sp. AR2]
gi|407047451|gb|AFS82203.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosopumilus
sp. AR2]
Length = 333
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 190/305 (62%), Gaps = 3/305 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR + + YGII LDKP P+SHE VAW KR+L++ K GHSGTLDP+V+G L + + A
Sbjct: 27 KRTIEQLLNYGIILLDKPPGPTSHETVAWTKRLLKLPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + R+H +P K+ ++ G +FQ+PP SAV RQ R RTI
Sbjct: 87 TKALGVLLYGPKEYHALGRVHS-LPSKEKLQEVVDMFRGEIFQKPPQRSAVLRQTRTRTI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YE +++E L++ I CEAGTY+R + +G ILG G M ELRR R E D
Sbjct: 146 YEFEIIEQK--ERLLLTRILCEAGTYIRKLYYDIGEILGPGATMVELRRTRVDQFSERDG 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H++ DA L++ +D++ L ++I P+E+ L+ K ++++D+ V+A+C+GA+L IPG
Sbjct: 204 LVTLHELADAFALWEEKKDDSKLMKMIKPVELALSELKSVIIRDSAVDAMCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ +++ G+ V + T KGEAVAL A M+ + G KR++M +TYP+K
Sbjct: 264 ILKISPNLKKGDIVGVYTQKGEAVALAEATMSEEEIRDATKGYAFETKRIIMAPNTYPKK 323
Query: 393 WGLGP 397
W P
Sbjct: 324 WRTKP 328
>gi|379005362|ref|YP_005261034.1| rRNA pseudouridine synthase, putative [Pyrobaculum oguniense TE7]
gi|375160815|gb|AFA40427.1| rRNA pseudouridine synthase, putative [Pyrobaculum oguniense TE7]
Length = 331
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 192/313 (61%), Gaps = 4/313 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R +YIR+ + LDKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSQRTADEYIRHSFVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + + K YV VA+ H V D ++ L G ++Q+PPL SAVKRQL
Sbjct: 81 AVAEGTKVLMALSRSDKVYVAVAKFHGDV-DEERLRAVLREFQGEIYQKPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R ++ +LLE + R+ V+ + EAGTY R + +G +LGVG +M+ELRRV
Sbjct: 140 RTRRVFSLELLELE-GRYAVIK-MHVEAGTYARKIIHDIGEVLGVGANMRELRRVAVTCF 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ D+ DA +++ Y D+ YLR V++P+E + ++ V+D+ V+A+C+GA
Sbjct: 198 TE-DEAVTLQDLADAYYIWKKYGDDTYLRSVLLPIEEIARHLPKIWVRDSAVDAVCHGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE G+ V + T KGE + +G A + + + + G V R RVVM R
Sbjct: 257 LAAPGISKFEVPFSKGDIVAMFTLKGELIGIGRALVDSEEVKKMERGAVVRTDRVVMRRG 316
Query: 388 TYPRKWGLGPRAS 400
TYP W G +A+
Sbjct: 317 TYPAMWKKGQKAA 329
>gi|150402885|ref|YP_001330179.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis C7]
gi|189036540|sp|A6VHV2.1|TRUB_METM7 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|150033915|gb|ABR66028.1| putative rRNA pseudouridine synthase [Methanococcus maripaludis C7]
Length = 333
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYKRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHD--KVPDVAKVARALEALTGAVFQRPPLISAVKR 205
+ T+ V KEYVC+ LHD K+ D+ + + TG + QRPPL +AVKR
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDAKLEDIENI---FKEFTGRIHQRPPLKAAVKR 132
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
LRIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 133 SLRIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISG 190
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
EN+ V + D++DA + +E LR+++ PLE L K+++VKD+ V+A+C+G
Sbjct: 191 PFYENE-AVYLQDLLDAYIFWKEDGNEEELRKLVKPLEYGLQHLKKIIVKDSAVDAVCHG 249
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L G+ + E I E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 250 ATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIME 309
Query: 386 RDTYPRKW 393
YPR W
Sbjct: 310 PGIYPRIW 317
>gi|393796299|ref|ZP_10379663.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 332
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 183/301 (60%), Gaps = 3/301 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR L + YG+I LDKP P+SHE VAW KRIL++ K GHSGTLDP+V+G L + + A
Sbjct: 27 KRTLEQLLDYGLIILDKPPGPTSHETVAWTKRILKIPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + R H +P K+ L+ G +FQ+PP SAV RQ R RTI
Sbjct: 87 TKALGVLLYGPKEYHALGRFHS-LPSKEKLEEVLDLFRGEIFQKPPQRSAVLRQTRTRTI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YE ++LE L++ + CEAGTY+R + +G ILG G M ELRR R E+D
Sbjct: 146 YELEVLEQK--ERLLLARVLCEAGTYIRKLFYDMGEILGPGATMIELRRTRVDQFYESDG 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H++ +A L+ DE L +I P+E L+ K +V++D+ V+A+C+GA+L IPG
Sbjct: 204 LVTLHELANAYALWKEKNDETKLLSMIKPIEYALSELKSVVIRDSAVDALCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ D++ G+ V + T KGEAVAL + M+ + G R++M +TYP+K
Sbjct: 264 ILQISPDLKKGDIVAIYTQKGEAVALAESMMSEEEIRDATKGYAFETNRIIMAPNTYPKK 323
Query: 393 W 393
W
Sbjct: 324 W 324
>gi|134046746|ref|YP_001098231.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis C5]
gi|189036539|sp|A4G0N3.1|TRUB_METM5 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|132664371|gb|ABO36017.1| tRNA pseudouridine synthase B [Methanococcus maripaludis C5]
Length = 333
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 183/308 (59%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHD--KVPDVAKVARALEALTGAVFQRPPLISAVKR 205
+ T+ V KEYVC+ LHD KV D+ + + TG + QRPPL +AVKR
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDAKVEDIENI---FKEFTGRIHQRPPLKAAVKR 132
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
LRIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 133 SLRIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISG 190
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
EN+ V + D++DA + +E LR+++ PLE L K+++VKD+ V+A+C+G
Sbjct: 191 PFYENE-AVYLQDLLDAYIFWKEDGNEEELRKLVKPLEYGLQHLKKIIVKDSAVDAVCHG 249
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L G+ + E I E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 250 ATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIME 309
Query: 386 RDTYPRKW 393
YPR W
Sbjct: 310 PGIYPRIW 317
>gi|329766344|ref|ZP_08257890.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137113|gb|EGG41403.1| pseudouridylate synthase subunit TruB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 332
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 183/301 (60%), Gaps = 3/301 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR L + YG+I LDKP P+SHE VAW KRIL++ K GHSGTLDP+V+G L + + A
Sbjct: 27 KRTLEQLLDYGLIILDKPPGPTSHETVAWTKRILKIPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + R H +P K+ L+ G +FQ+PP SAV RQ R RTI
Sbjct: 87 TKALGVLLYGPKEYHALGRFHS-LPSKEKLEEVLDLFRGEIFQKPPQRSAVLRQTRTRTI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YE ++LE L++ + CEAGTY+R + +G ILG G M ELRR R E+D
Sbjct: 146 YELEVLEQK--ERLLLARVLCEAGTYIRKLFYDMGEILGPGATMIELRRTRVDQFYESDG 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H++ +A L+ DE L +I P+E L+ K +V++D+ V+A+C+GA+L IPG
Sbjct: 204 LVTLHELANAYALWKEKNDETKLLSMIKPIEYALSELKSVVIRDSAVDALCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ D++ G+ V + T KGEA+AL + M+ + G R++M +TYP+K
Sbjct: 264 ILQISPDLKKGDIVAIYTQKGEAIALAESMMSGEEIRDATKGYAFETNRIIMAPNTYPKK 323
Query: 393 W 393
W
Sbjct: 324 W 324
>gi|159905370|ref|YP_001549032.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis C6]
gi|226708670|sp|A9A8X7.1|TRUB_METM6 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|159886863|gb|ABX01800.1| rRNA pseudouridine synthase [Methanococcus maripaludis C6]
Length = 333
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYKRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHD--KVPDVAKVARALEALTGAVFQRPPLISAVKR 205
+ T+ V KEYVC+ LHD K+ D+ + + TG + QRPPL +AVKR
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDAKLEDIENI---FKEFTGRIHQRPPLKAAVKR 132
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
LRIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 133 SLRIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISG 190
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
EN+ V + D++DA + +E LR+++ PLE L K+++VKD+ V+A+C+G
Sbjct: 191 PFYENE-AVYLQDLLDAYISWKEDGNEEELRKLVKPLEYGLQHLKKIIVKDSAVDAVCHG 249
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L G+ + E I E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 250 ATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIME 309
Query: 386 RDTYPRKW 393
YPR W
Sbjct: 310 PGIYPRIW 317
>gi|45359249|ref|NP_988806.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis S2]
gi|62901318|sp|Q6LWM3.1|TRUB_METMP RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|45048124|emb|CAF31242.1| pseudouridine syntase related protein [Methanococcus maripaludis
S2]
Length = 333
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+ V KEYVC+ LHD ++ + + TG + QRPPL +AVKR L
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDA-ELVDIENIFKEFTGRIHQRPPLKAAVKRSL 134
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 135 RIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISGPF 192
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
EN+ V + D++DA + +E LR+++ PLE L K++++KD+ V+A+C+GA
Sbjct: 193 YENE-AVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKKIIIKDSAVDAVCHGAT 251
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ + E + E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 252 LYSSGISKIEKGLGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIMEPG 311
Query: 388 TYPRKW 393
YPR W
Sbjct: 312 IYPRIW 317
>gi|340344269|ref|ZP_08667401.1| Pseudouridylate synthase TruB domain protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519410|gb|EGP93133.1| Pseudouridylate synthase TruB domain protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 332
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 184/301 (61%), Gaps = 3/301 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR L + YG+I LDKP P+SHE VAW KRIL++ K GHSGTLDP+V+G L + + A
Sbjct: 27 KRTLEQLLDYGLIILDKPPGPTSHETVAWTKRILKIPKIGHSGTLDPQVSGVLPLGLGEA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + R H +P K+ LE G +FQ+PP SAV RQ R RTI
Sbjct: 87 TKALGVLLYGPKEYHALGRFHS-LPSKQKLDEVLEMFRGEIFQKPPQRSAVLRQTRTRTI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
YE ++LE L++ I CEAGTY+R + +G ILG G M ELRR + E+D
Sbjct: 146 YELEVLEQK--ERLLLTRILCEAGTYIRKLYYDIGEILGPGATMIELRRTKVDQFHESDG 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H++ +A L++ +DE L +I P+E L+ + +V++D+ V+A+C+GA+L +PG
Sbjct: 204 LVTLHELANAYALWEEKKDETKLMSMIKPIEYALSELRSVVIRDSAVDALCHGAQLAMPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ ++ G+ V + T KGEAVAL + M+ + G KR++M + YP+K
Sbjct: 264 ILQISPNLRKGDIVAIYTQKGEAVALAESLMSEEEIRDATKGYAFETKRIIMAPNIYPKK 323
Query: 393 W 393
W
Sbjct: 324 W 324
>gi|167045203|gb|ABZ09863.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG8O8]
Length = 339
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 3/301 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR + + YG+I LDKP P+SH+VVAW K+IL + K GHSGTLDP+VTG L + + A
Sbjct: 27 KRSVEQLLNYGLILLDKPPGPTSHQVVAWAKKILEIPKAGHSGTLDPQVTGVLPLGLGDA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + RLH +P K+ L+ G ++QRPP SAV RQ RIR I
Sbjct: 87 TKALGVLLFGSKEYQGLGRLH-LLPSKEKLDGILKEFCGDIYQRPPQRSAVSRQTRIRKI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
+E +LLE L++ I+CE+GTY+R + +G +LG G M ELRR R EN
Sbjct: 146 FELELLEQK--ERLILIRITCESGTYIRKLIYDIGEVLGPGATMVELRRTRVNQFHENHP 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H V DA + +D L ++I P+E L+ K +V++D+ V+A+C+GA+L IPG
Sbjct: 204 LVTLHQVADAFSDWKEKKDSTKLLKLIHPIENALSELKSIVIRDSAVDALCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ +++ E V + T KGE VAL + M+ + G KR++M +TYP+K
Sbjct: 264 ILQISPNLQKDELVGIYTQKGEVVALAQSSMSGETIEETPKGHAFETKRIIMAPNTYPKK 323
Query: 393 W 393
W
Sbjct: 324 W 324
>gi|340624999|ref|YP_004743452.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis X1]
gi|339905267|gb|AEK20709.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus
maripaludis X1]
Length = 333
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 180/306 (58%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+ V KEYVC+ LHD ++ + + TG + QRPPL +AVKR L
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDA-ELVDIENIFKEFTGRIHQRPPLKAAVKRSL 134
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 135 RIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISGPF 192
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + V + D++DA + +E LR+++ PLE L K++++KD+ V+A+C+GA
Sbjct: 193 YEKE-AVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKKIIIKDSAVDAVCHGAT 251
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ + E + E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 252 LYSSGISKIEKGLGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIMEPG 311
Query: 388 TYPRKW 393
YPR W
Sbjct: 312 IYPRIW 317
>gi|150401644|ref|YP_001325410.1| H/ACA RNA-protein complex component Cbf5p [Methanococcus aeolicus
Nankai-3]
gi|189036538|sp|A6UWC6.1|TRUB_META3 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|150014347|gb|ABR56798.1| putative rRNA pseudouridine synthase [Methanococcus aeolicus
Nankai-3]
Length = 331
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 186/316 (58%), Gaps = 14/316 (4%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P RP+ + ++ GI+ +DKP+ P+SHEV AW++ IL+++ GH GTLDPKVTG L V
Sbjct: 16 GCDPYNRPIGELLKNGIVVIDKPSGPTSHEVSAWVRDILKLKLAGHGGTLDPKVTGVLPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ ++ + KEYVC+ LH + ++ + + TG +FQRPPL +AVKR L
Sbjct: 76 ALENTSKCISVWHMIPKEYVCLMHLHRDTEE-EELLKIFKKFTGRIFQRPPLKAAVKRSL 134
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IYE +LLE D V+F + C++GTY+RT+ +G LG HMQELRR+ SG
Sbjct: 135 RIRKIYELELLEKDGRD--VLFRVRCQSGTYIRTLAEDMGEALGTSAHMQELRRIVSGPF 192
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D +V + D+ DA + DE LR++I P+E L +++VKD+ V+AIC+GA
Sbjct: 193 TEKD-IVYLQDLTDAYIFWKENGDETELRKIIKPMEYGLQHINKIIVKDSAVDAICHGAN 251
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHG----------VVA 377
+ + G+ + I E V++ T KGEA+ +G A + T + +
Sbjct: 252 VYLNGVSKLSKGIGADETVLIETLKGEAIGIGTALLNTKNVLKESKNEEDNREKYKEPIV 311
Query: 378 RIKRVVMDRDTYPRKW 393
I+R+ M +TYP+ W
Sbjct: 312 DIERIFMSPNTYPKMW 327
>gi|374628862|ref|ZP_09701247.1| tRNA pseudouridine synthase B [Methanoplanus limicola DSM 2279]
gi|373906975|gb|EHQ35079.1| tRNA pseudouridine synthase B [Methanoplanus limicola DSM 2279]
Length = 313
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 186/304 (61%), Gaps = 6/304 (1%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
I+ GII +DKP PSSH+V AW+K IL EKTGH GTLDP V+G L++ + R +L
Sbjct: 11 IKSGIIVIDKPQGPSSHQVTAWVKEILGGEKTGHGGTLDPMVSGLLVIMLGRTVKLAPVL 70
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
KEYV + RLH ++ R + G V+QRPP SAVKRQLRIR +Y+ ++L
Sbjct: 71 LNHRKEYVALLRLHGDAKR-EEIERVVSEFKGKVYQRPPRKSAVKRQLRIREMYDIEVL- 128
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
DV LV+ + CEAGTY+R++C+H+G LG GG M ELRR +SG E D + +HD+
Sbjct: 129 -DVKDRLVLLRVDCEAGTYIRSLCIHIGFALGTGGQMVELRRTKSGPFTEKD-CIRLHDL 186
Query: 280 MDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEND 339
DA +Y+ + A L +I+P E L+ + ++V++D+ V+AIC GA L G+L+ E+
Sbjct: 187 KDAA-VYEEEGEPAMLSEMILPAERLVDTMPKVVIRDSAVDAICRGAALAGVGVLQKES- 244
Query: 340 IEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRA 399
+ G V +MT KGE V A +++ D G+VA V+M+ TYPR W P+
Sbjct: 245 YKRGSTVAVMTDKGELVCTAKALVSSEEYKPGDTGIVAGSVAVIMEPGTYPRGWTKKPKD 304
Query: 400 SMKK 403
+ KK
Sbjct: 305 AEKK 308
>gi|402467120|gb|EJW02475.1| hypothetical protein EDEG_00278 [Edhazardia aedis USNM 41457]
Length = 481
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 163/230 (70%), Gaps = 8/230 (3%)
Query: 172 LHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWI 231
+ + V D K L LTG VFQRPP + AVKR LR+R IY+ +L+E ++ L+ +
Sbjct: 188 MEEFVIDKKKFLNVLNKLTGEVFQRPPKMCAVKRNLRLRKIYKIELIEIHKNQALI--RV 245
Query: 232 SCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR- 290
CEAGTY+RT+C H+GL++G M++LRR +SG++ EN+ VT+HD++D+ Y Y
Sbjct: 246 FCEAGTYIRTLCQHIGLLMGYPAFMKDLRRSKSGLITENE-CVTLHDLLDSIKTYTTYNL 304
Query: 291 ----DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
E YLRRVI PLE LL ++KR+++KDT VNA+C+G +L IPG+LRF++ IE E+
Sbjct: 305 YPLDKEIYLRRVIKPLESLLLNFKRIIIKDTAVNAVCHGGQLTIPGILRFDDGIEKDMEI 364
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLG 396
VL+++KGEAVA+ ++ + ++ M + DHG+V +IKRVVM+R+ YP+ W LG
Sbjct: 365 VLVSSKGEAVAICVSLLFSSEMKSLDHGIVCKIKRVVMERNLYPKSWKLG 414
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 83/114 (72%), Gaps = 4/114 (3%)
Query: 63 SQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAW- 121
+++P+LLK+ D+++V+T H+TPL G+ PLKRPL+++++YG++ +DK PSSHE+V W
Sbjct: 8 NEFPLLLKDIDKMHVKTLHHTPLKTGFEPLKRPLLEHLKYGVVFIDKVKGPSSHEIVTWV 67
Query: 122 ---IKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARL 172
+K I +KTGH GTLDP+V+G L + I+RATRL K Q GKEY+C
Sbjct: 68 KDMVKEIFDCKKTGHCGTLDPQVSGCLPILIERATRLAKIGQSEGKEYICTVEF 121
>gi|70606602|ref|YP_255472.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus
acidocaldarius DSM 639]
gi|68567250|gb|AAY80179.1| tRNA pseudouridine synthase [Sulfolobus acidocaldarius DSM 639]
Length = 319
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 190/306 (62%), Gaps = 19/306 (6%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
GY KRP+ I+ IINLDKP P+SHEV W+K++ + K GH GTL+P
Sbjct: 32 GYYADKRPIESLIKNSIINLDKPPGPTSHEVAYWVKKLFNITKAGHGGTLEP-------- 83
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ +GKEY+C+ ++H V D ++ + G ++Q+PP+ S+VKR++
Sbjct: 84 -------VMNYISKSGKEYICLLQMHCNV-DQKELKEIISQFVGEIYQKPPVRSSVKRRI 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R IY +L D+ L++ + +AGTY+R +C +G+I G G HM+ELRR+RSGI
Sbjct: 136 RKRRIYAIDIL--DMQDKLILLRVQSDAGTYMRKLCHDVGVIAGCGSHMRELRRIRSGIF 193
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E NMVT+ +V ++ +LY N +DE+ LRR+++P+E + +++V DT VNAI YGAK
Sbjct: 194 TEKTNMVTLQEVSESLYLYRNCKDESELRRILLPMEYGVCGIPKVIVSDTAVNAITYGAK 253
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+L ++N ++V ++T KGE VA+G + + + + + G V R KR+ M+RD
Sbjct: 254 LNLPGILAYQN-FRKNQDVAVLTLKGELVAIGESIVESKQLESGKKGEVIRPKRIFMERD 312
Query: 388 TYPRKW 393
YP+ W
Sbjct: 313 IYPKSW 318
>gi|399950045|gb|AFP65701.1| pseudouridylate synthase [Chroomonas mesostigmatica CCMP1168]
Length = 375
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 197/350 (56%), Gaps = 3/350 (0%)
Query: 62 TSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRY-GIINLDKPANPSSHEVVA 120
T++WP+ LK++ L V+ + N + LK P Y GI+N+DKP+ +SHE+
Sbjct: 9 TNKWPLFLKSFCFLGVKADFLSADSNN-NILKSPTTQKTLYEGIVNIDKPSGWNSHEISL 67
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARL-HDKVPDV 179
WIK+ L +EKT + D TG L++C+ + K+Y+CV + + +
Sbjct: 68 WIKKSLGIEKTKNLEKADSNFTGCLLICLGNIFFFENINIESKKDYICVFNIKNSNIFKS 127
Query: 180 AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
+ L G F S +K L+IR + S L E D + L + IS
Sbjct: 128 VNFRKITNILNGNTFHAESFFSNLKSHLKIRNKFSSNLSEIDSKKFLGILEISSNFTLSS 187
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
+ G ILG ++ E+R++R G + E++N+ + D++DA+W+ ++ +L+++
Sbjct: 188 PFFFFNFGFILGKNVNLLEIRKIRFGNITEDENLFNLQDLIDAKWISRCLKNNFFLKKIF 247
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
P+E LL+ +KR++VK++ +N++CYG+KL I G+LRFE +IE E ++L++TKGE +ALG
Sbjct: 248 SPVEFLLSFHKRIIVKNSAINSLCYGSKLSISGILRFEKNIENEENLILLSTKGEMIALG 307
Query: 360 IAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
+++ T + D G+ + ++M++D YP++WG G A+ K LI+ G
Sbjct: 308 KSKLNTNSIFKLDVGLCVFVTSIIMEKDYYPKRWGFGIVATKKNLLISSG 357
>gi|408402829|ref|YP_006860812.1| tRNA pseudouridine synthase B [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408363425|gb|AFU57155.1| tRNA pseudouridine synthase B [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 355
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/308 (42%), Positives = 191/308 (62%), Gaps = 5/308 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P +RP+ + YG++ +DKPA P+SHEVVAW+KRIL +EK GHSGTLDP TG L +
Sbjct: 22 GHYPDRRPIESLLYYGLVLVDKPAGPTSHEVVAWVKRILEIEKAGHSGTLDPGATGLLPL 81
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+ + KEY +ARLH + V ++ R ++ TG ++QRPP S+V+R
Sbjct: 82 GLGEGTKALSVLLLGPKEYYALARLHSHI-SVDRLKRVMQEFTGEIYQRPPQRSSVRRVT 140
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RT+YE LE + DR LV+ I C+AGTY+R + +G +L G M ELRR R L
Sbjct: 141 RVRTVYEFDYLE-NYDR-LVLMRILCQAGTYIRKIIYDIGEVLSPGATMVELRRTRVSNL 198
Query: 268 GENDN--MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
E ++ +V +HD+ DA Y +D+ LRR+I+P+E L + + V+DT V+A+C+G
Sbjct: 199 SEQNSGGLVKLHDLADAYQRYKESKDDEKLRRLILPIEHCLEGIRAVTVRDTAVDALCHG 258
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L +PG++ D+ VGE V + T KGE V LG A MT + G+ +KR++M
Sbjct: 259 APLAVPGVVAVPKDLRVGELVGVYTLKGEVVGLGQAAMTKEEIEQNARGIAFAMKRLIMK 318
Query: 386 RDTYPRKW 393
TYP+ W
Sbjct: 319 PGTYPKAW 326
>gi|41615239|ref|NP_963737.1| H/ACA RNA-protein complex component Cbf5p [Nanoarchaeum equitans
Kin4-M]
gi|42559714|sp|P60346.1|TRUB_NANEQ RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|40068963|gb|AAR39298.1| NEQ454 [Nanoarchaeum equitans Kin4-M]
Length = 348
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 5/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P RP+ ++Y +INLDKP+ P+SH+VVAW++ I+ V K GH GTLDPKVTG L +
Sbjct: 44 GEDPYNRPIERLLKYSVINLDKPSGPTSHQVVAWVRDIVGV-KAGHGGTLDPKVTGVLPI 102
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I AT+++++ AGKEYV + LH +V + + + + G + Q PPL SAVK++
Sbjct: 103 AIGEATKVLQTLLIAGKEYVALMHLHKEVSE-KDIIKVMSKFVGTIIQTPPLRSAVKKRP 161
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R + +Y K++E +D V+F +S + G Y+R + +G+ LGVG HMQELRR++SG
Sbjct: 162 RKKKVYCIKIIE--IDGKDVLFRVSTQGGVYIRKLIHDIGVKLGVGAHMQELRRIKSGPF 219
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
EN N V + D++D+ + + +E Y+R+V +P+E + K++ + D+ V AI +GA
Sbjct: 220 HEN-NSVYLQDIVDSLYFWKEEGNEEYIRKVFLPVEEAVKHLKKIYILDSAVAAIVHGAN 278
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + ++I+ G+ V + T KGE VA+GIA M + M G+ I+RV M
Sbjct: 279 LAVPGIAKLYSNIKKGDLVSIHTLKGELVAIGIALMDSKEMLEKKRGIAVDIERVFMKPG 338
Query: 388 TYPRKW 393
YP+ W
Sbjct: 339 LYPKMW 344
>gi|118575518|ref|YP_875261.1| pseudouridine synthase [Cenarchaeum symbiosum A]
gi|118194039|gb|ABK76957.1| pseudouridine synthase [Cenarchaeum symbiosum A]
Length = 333
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 184/301 (61%), Gaps = 4/301 (1%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR + + YGI+ LDKP P+SHE VAW KRIL + K GHSGTLDP+V+G L + + A
Sbjct: 27 KRSVEQLLEYGIVLLDKPPGPTSHEAVAWAKRILEIPKAGHSGTLDPQVSGVLPLGLGEA 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEYV V R H + D K+ TG + Q+PP S+V R+ R++TI
Sbjct: 87 TKALGVLLIGPKEYVAVGRFH-ALQDSEKLGELARLFTGPIHQKPPQRSSVLRRTRVKTI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
+E ++LE LV+ +SCEAGTY+R + +G ++G G M ELRR R E
Sbjct: 146 HEIEVLEQK--ERLVLMRVSCEAGTYIRKLLYDMGEVVGSGASMIELRRTRVDHFTEGSG 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VTMH++ +A ++ D + L+R+I P+E L K +V++D+ V+A+C+GA+L IPG
Sbjct: 204 LVTMHELAEAYAVWKE-GDGSRLQRIIRPVEEALAGIKAVVIRDSAVDALCHGAQLAIPG 262
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ +++ +G+ + T KGE VAL AEM V+A G + KR++M DTYP+
Sbjct: 263 ILQVSDNLRIGDLAGVYTQKGEVVALAEAEMEAEVIADATKGHAFKTKRLIMKTDTYPKS 322
Query: 393 W 393
W
Sbjct: 323 W 323
>gi|212373373|dbj|BAE96944.2| Cbf5 [Sulfolobus shibatae]
Length = 227
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 159/218 (72%), Gaps = 3/218 (1%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
W+K++L V K GH GTLDPKVTG L + I+ AT+++ GKEYVCV ++H + D
Sbjct: 3 WVKKMLNVSKAGHGGTLDPKVTGVLPIGIENATKIMNYISKGGKEYVCVMQVHCEY-DKE 61
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
++ + +++ G ++QRPP+ S+VKR+LR+R+IY+ ++L D+D+ LV+F +SC++GTY+R
Sbjct: 62 ELTKIIKSFEGEIYQRPPVRSSVKRRLRVRSIYDIEIL--DMDKKLVLFRVSCDSGTYMR 119
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
+C +G+I G G HM+ELRR RSGI E+ N+V +HD+ +A +LY N +DE LRRV+M
Sbjct: 120 KLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKLHDLSEAIYLYKNCKDETELRRVLM 179
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
P+E +L+++D+ VNA+ YGA+L +PG++ ++N
Sbjct: 180 PMEYATCEMPKLIIEDSAVNALAYGAQLAVPGIVAYQN 217
>gi|432332028|ref|YP_007250171.1| rRNA pseudouridine synthase, putative [Methanoregula formicicum
SMSP]
gi|432138737|gb|AGB03664.1| rRNA pseudouridine synthase, putative [Methanoregula formicicum
SMSP]
Length = 360
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 179/296 (60%), Gaps = 13/296 (4%)
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
R GII +DKP PSSHEV AW+ ++L + GHSGTLDP+V+G L++ + A RL
Sbjct: 18 RAGIIVIDKPRGPSSHEVAAWVGKMLGCQ-VGHSGTLDPQVSGVLLIMLGNAARLAPLLL 76
Query: 161 GAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
KEY+C+ RLH V D ++ + E TG ++QRPP SAVKR LRIR +++ ++L
Sbjct: 77 QHDKEYICLMRLHGDV-DRERIDKRAEEFTGRLYQRPPRKSAVKRNLRIREVHKLEIL-- 133
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
DVD LV+F + C+AGTY+R++C H+G +LGVG HM ELRR RSG E+ +M T+HDV
Sbjct: 134 DVDGRLVLFRVHCDAGTYIRSLCHHMGFVLGVGAHMVELRRTRSGTFSES-SMYTLHDVQ 192
Query: 281 DAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGL---LRFE 337
DA + D + L ++I+ ++ + +VV+D ++A+C+GA L G+ + F
Sbjct: 193 DAA-VAAREGDRSALEKMIVSVDAAVPELPIVVVRDAAIDALCHGASLAGVGVVSTMEFA 251
Query: 338 NDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
D + V +++ K E + LG A + + D G+V V M TYPR W
Sbjct: 252 KD----QTVAVLSGKKEFICLGRALVPSGSFRPGDTGLVIAPTTVFMQPGTYPRSW 303
>gi|167044960|gb|ABZ09625.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG8G2]
gi|167045438|gb|ABZ10093.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG10F15]
Length = 337
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 3/301 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR + + YG+I LDKPA P+SHEVVAW KRIL + K GHSGTLDP+VTG L + +
Sbjct: 27 KRTVEQLLNYGLILLDKPAGPTSHEVVAWTKRILEIPKAGHSGTLDPQVTGVLPLGLGEG 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + RLH +P K+ L G ++Q+PP S+V RQ R+R I
Sbjct: 87 TKALGVLLLGPKEYHALGRLHS-LPSKEKLENILNEFCGDIYQKPPQRSSVLRQTRVRKI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
+E +LLE +L++ + CEAGTY+R + G IL G M ELRR R EN
Sbjct: 146 FELELLEQK--ENLILIRVLCEAGTYIRKLIYDFGEILVHGATMIELRRTRVSQFHENYP 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H + A + + +D++ L +I P+E +L+ K +V++DT V+A+C+GA+L IPG
Sbjct: 204 LVTLHQIAVAFADWKDNKDDSKLSTMIHPIEHVLSEIKSVVIRDTAVDALCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ +++ + V + T KGE VAL + M+ + G KR++M +TYP+
Sbjct: 264 ILQISPNLQKEDLVGIYTQKGEIVALAQSLMSEDDIKENTKGYAFETKRIIMAPETYPKS 323
Query: 393 W 393
W
Sbjct: 324 W 324
>gi|167044171|gb|ABZ08853.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG5E24]
gi|167044487|gb|ABZ09162.1| putative TruB family pseudouridylate synthase (N terminal domain)
[uncultured marine crenarchaeote HF4000_APKG6J21]
Length = 337
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 3/301 (0%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
KR + + YG+I LDKPA P+SHEVVAW KRIL + K GHSGTLDP+VTG L + +
Sbjct: 27 KRTVEQLLNYGLILLDKPAGPTSHEVVAWTKRILEIPKAGHSGTLDPQVTGVLPLGLGEG 86
Query: 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTI 212
T+ + KEY + RLH +P K+ L G ++Q+PP S+V RQ R+R I
Sbjct: 87 TKALGVLLLGPKEYHALGRLHS-LPSKEKLENILNEFCGDIYQKPPQRSSVLRQTRVRKI 145
Query: 213 YESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDN 272
+E +LLE +L++ + CEAGTY+R + G IL G M ELRR R EN
Sbjct: 146 FELELLEQK--ENLILIRVLCEAGTYIRKLIYDFGEILVHGATMIELRRTRVSQFHENYP 203
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+H + A + + +D++ L +I P+E +L+ K +V++DT V+A+C+GA+L IPG
Sbjct: 204 LVTLHQIAVAFADWKDSKDDSKLSTMIHPIEHVLSEIKSVVIRDTAVDALCHGAQLAIPG 263
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+L+ +++ + V + T KGE VAL + M+ + G KR++M +TYP+
Sbjct: 264 ILQISPNLQKEDLVGIYTQKGEIVALAQSLMSEDDIKENTKGYAFETKRIIMAPETYPKS 323
Query: 393 W 393
W
Sbjct: 324 W 324
>gi|212373370|dbj|BAE96943.2| Cbf5 [Sulfolobus metallicus]
Length = 278
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 175/274 (63%), Gaps = 5/274 (1%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIK+ L + + GH GTLDPKVTG L V +D AT+++ + KEYVCV ++H +
Sbjct: 3 WIKQRLSLNRVGHGGTLDPKVTGVLPVGLDNATKIMHYVSRSTKEYVCVMQVHSDF-EKE 61
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
+ + G ++QRPP+ S+V R+LR R IY+ ++ E ++ LV+ + E GTY+R
Sbjct: 62 SLKSWIMKFKGKIYQRPPVRSSVSRKLRTRKIYDIEVTE--IEDRLVLMKVISEHGTYMR 119
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
+C +G++ G G HM+ELRR R+GI E N+VTMH+ +A +++ N +DE+++R++IM
Sbjct: 120 KLCHDIGILSGYGAHMRELRRTRTGIFDER-NLVTMHEFSEAVYMWKNCKDESFIRKIIM 178
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
P+E+ +++V + V+AI YGAKL PG++ F+ + + V ++TTKGE V++G
Sbjct: 179 PMEIATCGIPKIMVDNNAVSAIAYGAKLTAPGVVGFQQ-FKKDDVVCVITTKGELVSVGK 237
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWG 394
A M +A D G VA RV +DRD YP+ WG
Sbjct: 238 ALMDYRRLAKVDKGEVASTDRVFIDRDVYPKHWG 271
>gi|126178488|ref|YP_001046453.1| pseudouridylate synthase [Methanoculleus marisnigri JR1]
gi|125861282|gb|ABN56471.1| tRNA pseudouridine synthase B [Methanoculleus marisnigri JR1]
Length = 302
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 176/293 (60%), Gaps = 10/293 (3%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ +DKP PSSH+V AW+ IL + GH+GTLDP+V+G LIV A RL
Sbjct: 12 GIVVVDKPRGPSSHQVAAWVGGILG-RRVGHAGTLDPQVSGVLIVMFGGAVRLAPVLLSH 70
Query: 163 GKEYVCVARLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
KEYVC+ RLH D ++ V +A + TG ++QRPP SAVKR LRIR I E ++L
Sbjct: 71 NKEYVCLMRLHG---DASRESVEQAAKEFTGRIYQRPPRKSAVKRSLRIRKIQEIEIL-- 125
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
D+D LV+F + C+AGTY+RT+CVHLG LG HM+ELRR+RSG E +VT+H++
Sbjct: 126 DMDGRLVLFRVRCDAGTYIRTLCVHLGYALGTCAHMEELRRIRSGSFDET-TIVTLHELA 184
Query: 281 DAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDI 340
DA E L+ +I+P + ++VV+DT V+A+C+GA L G++ E
Sbjct: 185 DAVAAAREGNHEP-LQGMILPPAAAVADLAKVVVRDTAVDAVCHGAVLAGVGVVGKEGGF 243
Query: 341 EVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
GE V ++T +GE V LG + ++ + + G V V+M TYPR W
Sbjct: 244 AKGETVAIVTERGELVGLGKGLVNSSALKPGEPGFVVAPTTVLMRPGTYPRGW 296
>gi|397780808|ref|YP_006545281.1| tRNA pseudouridine synthase B [Methanoculleus bourgensis MS2]
gi|396939310|emb|CCJ36565.1| tRNA pseudouridine synthase B [Methanoculleus bourgensis MS2]
Length = 306
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 173/291 (59%), Gaps = 6/291 (2%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ +DKP PSSH+V AW+ IL + GH+GTLDP+V+G L+V A RL
Sbjct: 13 GIVVIDKPRGPSSHQVTAWVGDILG-RRVGHAGTLDPQVSGVLVVMFGGAVRLAPVLLSH 71
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYVC+ RLH V A V R E G V+QRPP SAVKR LRIR I E ++L D+
Sbjct: 72 NKEYVCLMRLHGDVSREA-VDRVAEEFVGRVYQRPPRKSAVKRNLRIRKIQEIEVL--DM 128
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
+ LV+F + C+AGTY+RT+CVH+G LGV HMQELRR+RSG E V++H+ +
Sbjct: 129 EGRLVLFRVRCDAGTYIRTLCVHMGYTLGVCAHMQELRRIRSGPFDETAA-VSLHE-LAD 186
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
+ L+++I+ + ++V++DT V+A+C+GA L G+ E
Sbjct: 187 AAAAAREGNLVPLQQMILSPGAAVADLPKVVIRDTAVDAVCHGAVLAGVGVTGREGGFGK 246
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
GE V +MT +GE V LG A ++++ + + G+V V+M TYPR W
Sbjct: 247 GEVVAIMTGRGELVGLGKALVSSSALKPGEPGLVVAPTTVLMQPGTYPRGW 297
>gi|227830701|ref|YP_002832481.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus islandicus
L.S.2.15]
gi|385773683|ref|YP_005646249.1| H/ACA RNA-protein complex component, Cbf5p [Sulfolobus islandicus
HVE10/4]
gi|227457149|gb|ACP35836.1| PUA domain containing protein [Sulfolobus islandicus L.S.2.15]
gi|323477797|gb|ADX83035.1| H/ACA RNA-protein complex component, Cbf5p [Sulfolobus islandicus
HVE10/4]
Length = 239
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 160/232 (68%), Gaps = 4/232 (1%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
GKEYVCV ++H + D ++ + +++ G ++QRPP+ S+VKR+LR+R+IY+ ++L D
Sbjct: 7 GGKEYVCVMQVHCEY-DKEELTKIIKSFEGEIYQRPPVRSSVKRRLRVRSIYDIEIL--D 63
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
+D+ LV+F +SC++GTY+R +C +G+I G G HM+ELRR RSGI E+ N+V +HD+ +
Sbjct: 64 MDKKLVLFRVSCDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKLHDLSE 123
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
A +LY N +DE LRRV+MP+E +L+++D+ VNA+ YGA+L +PG++ ++N +
Sbjct: 124 AIYLYKNCKDETELRRVLMPMEYATCEMPKLIIEDSAVNALAYGAQLAVPGIVAYQN-FK 182
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
+ V ++T KGE VA G A + + + G+V + RV M RD YP+ W
Sbjct: 183 RNDTVAVLTLKGELVATGNALIDSKELENAKKGIVVNLSRVFMQRDIYPKAW 234
>gi|305662620|ref|YP_003858908.1| tRNA pseudouridine synthase B [Ignisphaera aggregans DSM 17230]
gi|304377189|gb|ADM27028.1| tRNA pseudouridine synthase B [Ignisphaera aggregans DSM 17230]
Length = 269
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 167/260 (64%), Gaps = 5/260 (1%)
Query: 135 GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKV-PDVAKVARALEALTGAV 193
G DPKVTG L V +DRATR++ + KEYV V LH V P+ KV ++ G +
Sbjct: 3 GRGDPKVTGVLPVALDRATRVIGILMHSYKEYVGVMELHGDVEPE--KVIETMKMFVGKI 60
Query: 194 FQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVG 253
+QRPPL S+VKR LRIR IY +LE + R V+F + C++GTYVR +C +GL+LGV
Sbjct: 61 YQRPPLRSSVKRSLRIREIYSIDVLEIENRR--VLFRVKCQSGTYVRKLCHDIGLLLGVE 118
Query: 254 GHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLV 313
HM+ELRR+ EN ++VT+H+V +A +++ N DE++LR++I+P+E ++ ++V
Sbjct: 119 AHMRELRRIGVAHFTENRDIVTLHEVSEALYIWRNLGDESFLRKMILPVEYIVAFLPKIV 178
Query: 314 VKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDH 373
VKD+ V+AI +GA+L +PG+ +I + V + T KGE VA+G A M + M D
Sbjct: 179 VKDSAVDAIAHGAQLAVPGISIVAKNINRDDRVAIFTLKGELVAIGRATMNSEEMVKSDR 238
Query: 374 GVVARIKRVVMDRDTYPRKW 393
G+ +I+RV M+ + YP W
Sbjct: 239 GIAVKIERVYMEPNIYPSVW 258
>gi|395644893|ref|ZP_10432753.1| rRNA pseudouridine synthase [Methanofollis liminatans DSM 4140]
gi|395441633|gb|EJG06390.1| rRNA pseudouridine synthase [Methanofollis liminatans DSM 4140]
Length = 533
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 175/291 (60%), Gaps = 7/291 (2%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKP PSSH+V AW+ +L V+ GH+GTLDP+V+G L+V A RL
Sbjct: 241 GLVVVDKPRGPSSHQVAAWVGEMLGVQ-VGHAGTLDPQVSGVLVVMFGPAVRLAPVLLRE 299
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYVC R+H D A++ G ++QRPP SAVKR LRIR I++ ++L DV
Sbjct: 300 QKEYVCAMRIHGDA-DRAQIEETAREFVGRIYQRPPRRSAVKRSLRIRKIHDLEVL--DV 356
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
D +V+F + C+AGTY+R++C HLGL LG G HMQELRR RSG+ E D +T+H + DA
Sbjct: 357 DGRVVLFRVVCDAGTYIRSLCHHLGLALGTGAHMQELRRTRSGLFTE-DKALTLHAIRDA 415
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
+ DEA L +I+P + + R+VV+D ++AIC+GAKL G+L +
Sbjct: 416 -CVAAAAGDEAALSGIILPPVLGVGEMPRIVVRDAAIDAICHGAKLAGVGVLS-KTKYRK 473
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
G+ V +++ K E V LG A + D G+V K V+M TYPR W
Sbjct: 474 GDLVAVLSEKDELVCLGEALVDAEAYKPGDTGLVLAPKAVMMAAGTYPRGW 524
>gi|256251502|emb|CAR63654.1| putative H/ACA ribonucleoprotein complex subunit 4 [Angiostrongylus
cantonensis]
Length = 162
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 129/153 (84%)
Query: 273 MVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
+VT+HDV+DAQ++ D+++DE Y+R+++ PLE LL +KR++VKD++VNAICYGAK+++PG
Sbjct: 2 LVTLHDVLDAQYVLDHHKDETYMRKIVRPLEALLVQHKRIIVKDSSVNAICYGAKILLPG 61
Query: 333 LLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392
+LR+++ IEVG+E+V+++TKGEA+ L IA+MTT+ MA+ DHGVVA+ KRV+M+RD Y RK
Sbjct: 62 VLRYDDGIEVGQEIVIVSTKGEAICLAIAQMTTSTMASTDHGVVAKSKRVIMERDVYGRK 121
Query: 393 WGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEW 425
WGLGP AS KK++I +G LDK GK N TP W
Sbjct: 122 WGLGPVASKKKQMIKDGLLDKFGKPNANTPANW 154
>gi|385776318|ref|YP_005648886.1| H/ACA RNA-protein complex component, Cbf5p [Sulfolobus islandicus
REY15A]
gi|323475066|gb|ADX85672.1| H/ACA RNA-protein complex component, Cbf5p [Sulfolobus islandicus
REY15A]
Length = 239
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 160/232 (68%), Gaps = 4/232 (1%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
GKEYVCV ++H + D ++ + +++ G ++QRPP+ S+VKR+LR+R+IY+ ++L D
Sbjct: 7 GGKEYVCVMQVHCEY-DKEELTKIIKSFEGEIYQRPPVRSSVKRRLRVRSIYDIEIL--D 63
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
+D+ LV+F +SC++GTY+R +C +G+I G G HM+ELRR RSGI E+ N+V +H++ +
Sbjct: 64 MDKKLVLFRVSCDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKLHNLSE 123
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
A +LY N +DE LRRV+MP+E +L+++D+ VNA+ YGA+L +PG++ ++N +
Sbjct: 124 AIYLYKNCKDETELRRVLMPMEYATCEMPKLIIEDSAVNALAYGAQLAVPGIVAYQN-FK 182
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
+ V ++T KGE VA G A + + + G+V + RV M RD YP+ W
Sbjct: 183 RNDTVAVLTLKGELVATGNALIDSKELENAKKGIVVNLSRVFMQRDIYPKAW 234
>gi|307352550|ref|YP_003893601.1| pseudouridylate synthase TruB domain-containing protein
[Methanoplanus petrolearius DSM 11571]
gi|307155783|gb|ADN35163.1| pseudouridylate synthase TruB domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 305
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/294 (41%), Positives = 177/294 (60%), Gaps = 7/294 (2%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+ G++ LDKP PSSH+ AW IL V TG GTLDP V+G L++ + RA RL
Sbjct: 13 LNCGVVVLDKPQGPSSHQAAAWAAEILGV-NTGQGGTLDPMVSGVLVLMLGRAVRLAPVL 71
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
KEYV + RLH VP+ ++ + G +QRPP +SAVKRQLRIR IY+ ++L
Sbjct: 72 LNHRKEYVALMRLHKDVPE-ERIRTVAKEFIGRQYQRPPKMSAVKRQLRIREIYDLEIL- 129
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
D++ LV+ + CEAGTY+R +C H+ L +G GG M ELRR +SG EN+ VT+HD+
Sbjct: 130 -DIEGRLVLMRVECEAGTYIRLLCRHIALAMGAGGQMVELRRTKSGPFTENE-CVTLHDL 187
Query: 280 MDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEND 339
DA Y + L ++I+P+E L S ++V++D V+A+C+GA L G+L +N
Sbjct: 188 KDAVE-YAKEGNSGPLEKMILPVERLAGSLPKVVIRDKAVDAVCHGAVLAAVGILEKDN- 245
Query: 340 IEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
+ V +MT K E V +G A +++ A D G+V R + V+M+ TY + W
Sbjct: 246 YKKNARVAVMTQKDELVCVGKAIVSSEDYAKSDTGLVIRPEIVIMEPGTYEKGW 299
>gi|284173335|ref|ZP_06387304.1| tRNA pseudouridine synthase B [Sulfolobus solfataricus 98/2]
gi|384433846|ref|YP_005643204.1| pseudouridylate synthase TruB domain-containing protein [Sulfolobus
solfataricus 98/2]
gi|37089644|sp|Q980C3.1|TRUB_SULSO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|13813542|gb|AAK40720.1| tRNA pseudouridine synthase subunit B (truB) [Sulfolobus
solfataricus P2]
gi|261602000|gb|ACX91603.1| pseudouridylate synthase TruB domain protein [Sulfolobus
solfataricus 98/2]
Length = 251
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 165/245 (67%), Gaps = 4/245 (1%)
Query: 149 IDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLR 208
I+ AT+++ GKEYVCV ++H + + ++A+ + + G ++QRPP+ S+VKR+LR
Sbjct: 6 IENATKIMNYISKGGKEYVCVMQVHCEY-NKEELAKIISSFKGEIYQRPPVRSSVKRRLR 64
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
IR IY+ ++L D+D+ LV+ ++C++GTY+R +C +G+I G G HM+ELRR RSGI
Sbjct: 65 IRRIYDIEIL--DMDKKLVLLRVNCDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIFT 122
Query: 269 ENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
E+ N+V +H++ +A +LY N +DE LRRV++P+E ++V++D+ VNA+ YGA+L
Sbjct: 123 ESTNLVKLHELSEAIYLYKNCKDETELRRVLIPMEFATCEIPKIVIEDSAVNALAYGAQL 182
Query: 329 MIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388
+PG++ ++N + + V ++T KGE VA G A M + + G+V + RV M RD
Sbjct: 183 AVPGVVAYQN-FKKNDTVAVLTLKGELVATGNALMDSEELENAKKGIVVNLSRVFMQRDI 241
Query: 389 YPRKW 393
YP+ W
Sbjct: 242 YPKAW 246
>gi|161408031|dbj|BAF94119.1| Cbf5 [Thermofilum pendens]
gi|161408033|dbj|BAF94120.1| Cbf5 [Thermofilum librum]
Length = 229
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 158/232 (68%), Gaps = 3/232 (1%)
Query: 118 VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP 177
VVAW++++L +E+ H+GTLDPKV+G L + ++ A R++ KEYVCV RLH V
Sbjct: 1 VVAWLRKLLGIERIAHAGTLDPKVSGVLPITLNNAVRVLPVLLKEDKEYVCVMRLHGDV- 59
Query: 178 DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
D ++ R + G ++QRPPL SAVKR++RIR IY+ +LLE++ L+ W CEAGT
Sbjct: 60 DPERLERVVSMFKGRIYQRPPLRSAVKREVRIRQIYDIRLLEFNERTALLHVW--CEAGT 117
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+R +C +G ILGVG HMQELRR+RSG L E+ N TMHDV+DA +++ + +LR+
Sbjct: 118 YMRKLCHDIGEILGVGAHMQELRRIRSGSLYEDRNCSTMHDVVDAYYIWKERGIDHFLRQ 177
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
V +P+E + ++ ++D+ V+A+C+GA L +PG+++ E I+V V ++
Sbjct: 178 VFLPVEAAIQHLPKVWIRDSAVDAVCHGAPLAVPGIVKLEGGIKVNSTVAIL 229
>gi|355571399|ref|ZP_09042651.1| rRNA pseudouridine synthase [Methanolinea tarda NOBI-1]
gi|354825787|gb|EHF10009.1| rRNA pseudouridine synthase [Methanolinea tarda NOBI-1]
Length = 303
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 167/295 (56%), Gaps = 11/295 (3%)
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
R G+I +DKP PSSH+V AW+ IL + GH+GTLDP V+G L+V + RA RL
Sbjct: 11 RGGLIVIDKPRGPSSHQVTAWVGDILG-QNVGHAGTLDPGVSGVLVVMVGRAVRLAPVLL 69
Query: 161 GAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
KEYV + R H P + +A G ++QRPP S+V R LRIRT+ LLE
Sbjct: 70 SHDKEYVALVRFHGN-PGEEAIRKACSEFCGRIYQRPPRRSSVARNLRIRTVQSLDLLE- 127
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
+D L V I C+AGTY+R++C H+GL LG G HMQELRR RSG E D+ T+ +
Sbjct: 128 -LDGRLAVLRICCDAGTYIRSLCHHMGLALGCGAHMQELRRTRSGPFRE-DSAHTLAGLR 185
Query: 281 DAQWLYDNYRDEAY--LRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
DA D +R LR +I+P E L +V++D+ V+A+C+GA L G+L
Sbjct: 186 DAA---DAFRMGCVRPLREMILPPESALAGLPEVVIRDSAVDALCHGAALAGVGILS-SG 241
Query: 339 DIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
GE V +MT KGE V G A +++ + G+V + V + R TYP W
Sbjct: 242 VFRKGERVAVMTQKGELVCTGQALVSSTQFSPGKPGLVIAPESVFLPRGTYPPGW 296
>gi|88603514|ref|YP_503692.1| pseudouridylate synthase [Methanospirillum hungatei JF-1]
gi|88188976|gb|ABD41973.1| tRNA pseudouridine synthase B [Methanospirillum hungatei JF-1]
Length = 310
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 179/293 (61%), Gaps = 13/293 (4%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
II +DKP PSSH+V AW++ I V GH+GTLDP V+G L++ + RA RL
Sbjct: 18 IILIDKPRGPSSHQVAAWVREITGVSSVGHTGTLDPPVSGVLVILLGRAVRLTTILHQDD 77
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYV + RL V D A++A +E TG ++QRPP SAVKR LRIR I+E ++L D
Sbjct: 78 KEYVALLRLQGDVSD-AELAEVIEHFTGRIYQRPPKRSAVKRALRIREIHELEMLGR--D 134
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
LV+F + C++GTY+R++C H+G+ GVGG M ELRR RSG E D VT+H + DA
Sbjct: 135 GRLVLFRVKCDSGTYIRSLCHHIGMACGVGGAMVELRRTRSGPFSEKD-CVTLHTLRDA- 192
Query: 284 WLYDNYR--DEAYLRRVI-MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDI 340
+ R D+ YLR++I PLE L + R+ +K++ +AIC+GA+L G++ +D
Sbjct: 193 --VEKARAGDDTYLRKIIRSPLEA-LHGFPRIQMKESAADAICHGARLSSRGVV--SHDT 247
Query: 341 EVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
E++V+M + + +G A ++++ + + G+V + V+ D YP W
Sbjct: 248 FQMEDLVVMLAGDDFIGIGEALVSSSRIVPGEKGLVVAPRLVMQDIGVYPAVW 300
>gi|161777478|ref|NP_341930.2| tRNA pseudouridine synthase B [Sulfolobus solfataricus P2]
Length = 239
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 158/232 (68%), Gaps = 4/232 (1%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
GKEYVCV ++H + + ++A+ + + G ++QRPP+ S+VKR+LRIR IY+ ++L D
Sbjct: 7 GGKEYVCVMQVHCEY-NKEELAKIISSFKGEIYQRPPVRSSVKRRLRIRRIYDIEIL--D 63
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
+D+ LV+ ++C++GTY+R +C +G+I G G HM+ELRR RSGI E+ N+V +H++ +
Sbjct: 64 MDKKLVLLRVNCDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKLHELSE 123
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
A +LY N +DE LRRV++P+E ++V++D+ VNA+ YGA+L +PG++ ++N +
Sbjct: 124 AIYLYKNCKDETELRRVLIPMEFATCEIPKIVIEDSAVNALAYGAQLAVPGVVAYQN-FK 182
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
+ V ++T KGE VA G A M + + G+V + RV M RD YP+ W
Sbjct: 183 KNDTVAVLTLKGELVATGNALMDSEELENAKKGIVVNLSRVFMQRDIYPKAW 234
>gi|289597166|ref|YP_003483862.1| pseudouridylate synthase TruB domain protein [Aciduliprofundum
boonei T469]
gi|289534953|gb|ADD09300.1| pseudouridylate synthase TruB domain protein [Aciduliprofundum
boonei T469]
Length = 286
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 182/302 (60%), Gaps = 17/302 (5%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
LKR + D + +G++ +DKP P+SH+V AW++ IL + KTGH+GTLDPKVTG L V + R
Sbjct: 2 LKRSVEDLLNFGVVIIDKPKGPTSHQVSAWVRDILHINKTGHAGTLDPKVTGVLPVGLGR 61
Query: 152 ATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRT 211
AT+L+ KEYV V R H D KV ++ G ++Q PPL SAV R+LR R
Sbjct: 62 ATKLINLLHLVPKEYVGVMRFHKDF-DENKVREIMKEFEGEIYQVPPLRSAVARRLRKRK 120
Query: 212 IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEND 271
+Y ++L+ +DR V+F E+GTY+RT+C +G + +G HM++LRR +G E D
Sbjct: 121 VYSIEILDL-LDRD-VLFRAKVESGTYIRTLCNDIGEAMCIGAHMEDLRRTATGHFREED 178
Query: 272 NMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
T+ D++DA + +E Y+R +I P E +++ +++VKD+ VNA+ +GA L P
Sbjct: 179 AH-TLQDLLDAYIFWKENGEEKYIRDIIRPAEDIVSFLPKIIVKDSAVNALAHGAPLYKP 237
Query: 332 GLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPR 391
G+ +N +E G V L T+ GE +++ I + ++A+ RVVM+ P+
Sbjct: 238 GVTEMDN-VEKGNYVALYTSDGELISVSI--------VVLEDNIIAKPFRVVME----PK 284
Query: 392 KW 393
K+
Sbjct: 285 KF 286
>gi|254167013|ref|ZP_04873866.1| TruB family pseudouridylate synthase (N terminal domain) protein
[Aciduliprofundum boonei T469]
gi|197623869|gb|EDY36431.1| TruB family pseudouridylate synthase (N terminal domain) protein
[Aciduliprofundum boonei T469]
Length = 285
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 184/302 (60%), Gaps = 17/302 (5%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
+KR + D + +G++ +DKP P+SH+V AW++ IL + KTGH+GTLDPKVTG L V + R
Sbjct: 1 MKRSVEDLLNFGVVIIDKPKGPTSHQVSAWVRDILHINKTGHAGTLDPKVTGVLPVGLGR 60
Query: 152 ATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRT 211
AT+L+ KEYV V R H K D KV ++ G ++Q PPL SAV R+LR R
Sbjct: 61 ATKLINLLHLVPKEYVGVMRFH-KDFDENKVREIMKEFEGEIYQVPPLRSAVARRLRKRK 119
Query: 212 IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEND 271
+Y ++L+ +DR V+F E+GTY+RT+C +G + +G HM++LRR +G E D
Sbjct: 120 VYSIEILDL-LDRD-VLFRAKVESGTYIRTLCNDIGEAMCIGAHMEDLRRTATGHFREED 177
Query: 272 NMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
T+ D++DA + +E Y+R +I P E +++ +++VKD+ VNA+ +GA L P
Sbjct: 178 AH-TLQDLLDAYIFWKENGEEKYMRDIIRPAEDIVSFLSKIIVKDSAVNALAHGAPLYKP 236
Query: 332 GLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPR 391
G++ +N +E G V L T+ GE +++ I + ++A+ RVVM+ P+
Sbjct: 237 GVIEMDN-VEKGGYVALYTSDGELISVSI--------VVLEDDIIAKPFRVVME----PK 283
Query: 392 KW 393
K+
Sbjct: 284 KF 285
>gi|254167810|ref|ZP_04874660.1| TruB family pseudouridylate synthase (N terminal domain) protein
[Aciduliprofundum boonei T469]
gi|197623338|gb|EDY35903.1| TruB family pseudouridylate synthase (N terminal domain) protein
[Aciduliprofundum boonei T469]
Length = 285
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 182/302 (60%), Gaps = 17/302 (5%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
+KR + D + +G++ +DKP P+SH+V AW++ IL + KTGH+GTLDPKVTG L V + R
Sbjct: 1 MKRSVEDLLNFGVVIIDKPKGPTSHQVSAWVRDILHINKTGHAGTLDPKVTGVLPVGLGR 60
Query: 152 ATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRT 211
AT+L+ KEYV V R H D KV ++ G ++Q PPL SAV R+LR R
Sbjct: 61 ATKLINLLHLVPKEYVGVMRFHKDF-DENKVREIMKEFEGEIYQVPPLRSAVARRLRKRK 119
Query: 212 IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEND 271
+Y ++L+ +DR V+F E+GTY+RT+C +G + +G HM++LRR +G E D
Sbjct: 120 VYSIEILDL-LDRD-VLFRAKVESGTYIRTLCNDIGEAMCIGAHMEDLRRTATGHFREED 177
Query: 272 NMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
T+ D++DA + +E Y+R +I P E +++ +++VKD+ VNA+ +GA L P
Sbjct: 178 AH-TLQDLLDAYIFWKENGEEKYIRDIIRPAEDIVSFLPKIIVKDSAVNALAHGAPLYKP 236
Query: 332 GLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPR 391
G+ +N +E G V L T+ GE +++ I + ++A+ RVVM+ P+
Sbjct: 237 GVTEMDN-VEKGNYVALYTSDGELISVSI--------VVLEDNIIAKPFRVVME----PK 283
Query: 392 KW 393
K+
Sbjct: 284 KF 285
>gi|291235422|ref|XP_002737644.1| PREDICTED: centromere/microtubule binding protein cbf5,
putative-like [Saccoglossus kowalevskii]
Length = 378
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/148 (64%), Positives = 112/148 (75%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
DF+IKP S +DT QWP+LLKN+D+LN+RTGHY PLPNG SPLKR L DY+ G INL
Sbjct: 35 DFLIKPDSKPAKLDTCQWPLLLKNFDKLNIRTGHYVPLPNGASPLKRELNDYLSSGFINL 94
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKPANPSSHEVV+W+KRILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGK
Sbjct: 95 DKPANPSSHEVVSWVKRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKLQY 154
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQ 195
+ L+ + V + + + V +
Sbjct: 155 SLLNLYSNLFCVNAICYGAKIMLPGVLR 182
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/164 (59%), Positives = 118/164 (71%), Gaps = 17/164 (10%)
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
LL Y L VNAICYGAK+M+PG+LRFE+ IE+ EVV+++TKGEA+ LGIA MT
Sbjct: 156 LLNLYSNLFC----VNAICYGAKIMLPGVLRFEDGIEINSEVVVLSTKGEAICLGIALMT 211
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQE 424
TAVMATCDHGV+A+IKRV+M+RDTYPRKWGLGP+AS+ KK+I EGKL+K+GK NE+TP
Sbjct: 212 TAVMATCDHGVIAKIKRVIMERDTYPRKWGLGPKASLVKKMIKEGKLNKYGKPNEETPAN 271
Query: 425 WAR-----NVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
W NV P S A + VAE ETA KKRK+
Sbjct: 272 WTSTYTDYNVQKTP-------STPKADIEEVAEVETAS-KKRKI 307
>gi|256252638|dbj|BAH97716.1| Cbf5 [Pyrodictium abyssi]
Length = 228
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 151/231 (65%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAW+KR+ + K GH GTLDPKVTG L V ++ AT+++ GKEY CV +LH VP+
Sbjct: 1 VAWVKRMFGLSKAGHGGTLDPKVTGVLPVALEEATKVIGLVVHTGKEYTCVMQLHHPVPE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
+ RALE G ++QRPPL S+VKR LR + IYE +LLEY+ R+ + + CEAGTY
Sbjct: 61 -QDLRRALEMFVGEIYQRPPLRSSVKRSLRTKKIYEIELLEYN-GRY-ALMRVFCEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C +GLILGVG HM+ELRR +SG E +V + D+ +A + + N E LR+
Sbjct: 118 MRKLCHDVGLILGVGAHMRELRRTKSGPFREQHGLVRLQDLSEALYRWRNEGKEDLLRKY 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I P+E ++ ++V++DT V+AI +GA L +PG++R I+ G+ V L
Sbjct: 178 IKPIEYAVSHLPKIVIRDTAVDAIAHGANLAVPGIVRLHEGIQRGDLVALF 228
>gi|257206226|emb|CAX82764.1| Nucleolar protein [Schistosoma japonicum]
Length = 163
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 113/150 (75%), Gaps = 1/150 (0%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DAD A A+ F + P+ P++D SQWP+LLKN +NVR H+ G+SPL RP
Sbjct: 12 DADVGAIQA-AEPFAVIPEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGFSPLHRP 70
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
L +YI+ G+INLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRL
Sbjct: 71 LDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRL 130
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARA 185
VKSQQ AGKEYVC+ RLHD V DV K+ +A
Sbjct: 131 VKSQQSAGKEYVCIFRLHDSVDDVKKIQKA 160
>gi|160331508|ref|XP_001712461.1| cbf5 [Hemiselmis andersenii]
gi|159765909|gb|ABW98136.1| cbf5 [Hemiselmis andersenii]
Length = 382
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 219/375 (58%), Gaps = 14/375 (3%)
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKR--PLVDYI----RYGIINLDKPANPS 114
+ + WP+LL+N+ L+ + +S K+ P ++++ + G+IN DKP +
Sbjct: 3 NKNDWPLLLRNFYMLD------SCKKQNFSTNKKIFPSLNFLEKKNKNGLINFDKPFGCN 56
Query: 115 SHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHD 174
SHE++ WI++IL+++ G ++G +I+ I ++ L K + + Y+ V +
Sbjct: 57 SHEILHWIEKILKLKTIKCFGKAPSNISGCMILGIGKSF-LNKLEFSSKSNYILVYTFPN 115
Query: 175 KVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCE 234
+ + A + +F+ + S +K+QL + I+++ LE+D+ + + VF I+ +
Sbjct: 116 LPYENFRKINAWKKFNFNLFKNYFVFSKIKQQLLLNRIFQASHLEFDIRKKIGVFEITVQ 175
Query: 235 AGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAY 294
+++ ++LG + + E+RR+R G L E +++ T HD++DAQWL +++ +
Sbjct: 176 FPISTQSLIINLGFLFRKKIKLLEIRRIRIGSLTEEESLATFHDLLDAQWLKKHFKKNFF 235
Query: 295 LRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGE 354
R++I+PL+VL + Y+R++VKD+++N+IC+GA L G+L+ E +IE+GE++VL+ +G+
Sbjct: 236 FRKIILPLDVLFSEYRRVLVKDSSINSICFGAGLTSSGILKIEPNIEIGEKIVLLNFQGD 295
Query: 355 AVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKH 414
+A+G++++ + + G+V K+V + + Y +KW GP ++ K L++ G +DK
Sbjct: 296 PIAIGVSKINSYSLFNSFSGLVVETKKVFIQKGFYRKKWHFGPTSTKKNILLSIG-IDKF 354
Query: 415 GKLNEKTPQEWARNV 429
K + Q+W + V
Sbjct: 355 FKKKKFNNQKWWKRV 369
>gi|219853303|ref|YP_002467735.1| pseudouridylate synthase TruB domain-containing protein
[Methanosphaerula palustris E1-9c]
gi|219547562|gb|ACL18012.1| pseudouridylate synthase TruB domain protein [Methanosphaerula
palustris E1-9c]
Length = 299
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 172/293 (58%), Gaps = 11/293 (3%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ +DKP PSSH+V AW+ +L V+ GH+GTLDP V+G L+V + A RL
Sbjct: 9 GIVIIDKPRGPSSHQVAAWVGDLLGVD-VGHAGTLDPMVSGVLVVMLGNAVRLAPLLLQH 67
Query: 163 GKEYVCVARLH-DKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
KEYV + RLH D P DV + AR L TG V+QRPP SAVKR LRIRTI + +L
Sbjct: 68 DKEYVALMRLHGDAEPSDVQEAAREL---TGRVYQRPPRRSAVKRALRIRTIQDLTVL-- 122
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
D LV+ I C+AGTY+R++C HLGL+LGVGGHMQELRR RSG E T+H +
Sbjct: 123 DQQGRLVLLRIRCDAGTYIRSLCHHLGLVLGVGGHMQELRRTRSGTFDEMQAH-TLHALK 181
Query: 281 DAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDI 340
DA + D + L +I+P+EV + + +V++D+ V+AIC+ ++ +
Sbjct: 182 DAVF-RAKEGDSSALDAMILPVEVAIPEVQTVVIRDSAVDAICH-GAVLAGVGVVGVTKF 239
Query: 341 EVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
+ GE V ++T K E V LG A + + G+V V M TYPR W
Sbjct: 240 KRGERVAVLTEKKEFVCLGRALVDATAIIPGKPGLVVAPGTVFMTSGTYPRCW 292
>gi|256252644|dbj|BAH97719.1| Cbf5 [Ignisphaera aggregans]
Length = 228
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 149/216 (68%), Gaps = 5/216 (2%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKV-P 177
VAWIK++ + K GH GTLDPKVTG L V +DRATR++ + KEYV V LH V P
Sbjct: 1 VAWIKKMFNIPKAGHGGTLDPKVTGVLPVALDRATRVIGILMHSYKEYVGVMELHGDVEP 60
Query: 178 DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
+ KV ++ G ++QRPPL S+VKR LRIR IY +LE + R V+F + C++GT
Sbjct: 61 E--KVIETMKMFVGKIYQRPPLRSSVKRSLRIREIYSIDVLEIENRR--VLFRVKCQSGT 116
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
YVR +C +GL+LGV HM+ELRR+ EN ++VT+H+V +A +++ N DE++LR+
Sbjct: 117 YVRKLCHDIGLLLGVEAHMRELRRIGVAHFTENRDIVTLHEVSEALYIWRNLGDESFLRK 176
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGL 333
+I+P+E ++ ++VVKD+ V+AI +GA+L +PG+
Sbjct: 177 MILPVEYIVAFLPKIVVKDSAVDAIAHGAQLAVPGI 212
>gi|56752805|gb|AAW24614.1| unknown [Schistosoma japonicum]
Length = 176
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/154 (62%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
DAD A A+ F + P+ P++D SQWP+LLKN +NVR H+ G+SPL RP
Sbjct: 12 DADVGAIQA-AEPFAVIPEDKKPTLDCSQWPLLLKNVHLMNVRECHFEADTTGFSPLHRP 70
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
L +YI+ G+INLDKP NPSSHEVVAW+KR L V KTGHSGTLDPKV+G LIVCIDRATRL
Sbjct: 71 LDEYIKSGVINLDKPCNPSSHEVVAWVKRALGVNKTGHSGTLDPKVSGCLIVCIDRATRL 130
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEAL 189
VKSQQ AGKEYVC+ RLHD V DV K+ + L
Sbjct: 131 VKSQQSAGKEYVCIFRLHDSVDDVQKIQKVSSYL 164
>gi|154150056|ref|YP_001403674.1| pseudouridylate synthase [Methanoregula boonei 6A8]
gi|153998608|gb|ABS55031.1| Pseudouridylate synthase [Methanoregula boonei 6A8]
Length = 322
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 169/294 (57%), Gaps = 13/294 (4%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII +DKP PSSH+V AW+ +L GH+GTLDP+V+G L+V + A RL
Sbjct: 23 GIIVIDKPRGPSSHQVAAWVGTMLGCP-VGHAGTLDPQVSGILLVMLGNAVRLAPLLLKH 81
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEY+C+ RLH +V D ++ E +G ++QRPP SAVKR LRIRTI + ++L DV
Sbjct: 82 DKEYICLMRLHKEV-DRQRIDAMAEEFSGRIYQRPPRRSAVKRLLRIRTIKKLEIL--DV 138
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
LV+F + C+AGTY+R++C H+GL LG G HMQELRR RSG E M T+H + DA
Sbjct: 139 QGRLVLFKVECDAGTYIRSLCHHMGLALGTGAHMQELRRTRSGAFDEQ-CMHTLHALQDA 197
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL---RFEND 339
D L +I+ ++ + + V+DT ++A+C+GA L G++ F D
Sbjct: 198 C-CAAAAGDRVALDSMIVSVDAAVPDLPAVTVRDTAIDALCHGAALAGVGVIDCDEFRKD 256
Query: 340 IEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
+ V +++ K E + LG + +A G+V + V M TYPR W
Sbjct: 257 ----QIVAVLSQKREFIGLGKSLAPSAAWKPGTPGLVVAMTTVFMAPGTYPRGW 306
>gi|212373354|dbj|BAE96935.2| Cbf5 [Hyperthermus butylicus DSM 5456]
Length = 228
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 152/231 (65%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKR+ + K GH GTLDPKVTG L V ++ T+++ GKEY+CV +LH VP+
Sbjct: 1 VAWIKRMFGLSKAGHGGTLDPKVTGVLPVALEEGTKVIGLVVHTGKEYMCVMQLHRPVPE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ RA+ G ++QRPPL S+VKR LR++ IYE +LLEY+ R+ + + EAGTY
Sbjct: 61 -EELRRAINMFVGEIYQRPPLRSSVKRSLRLKKIYEIELLEYN-GRY-ALMRVFSEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C +GLILGVG HM+ELRR RSG E + +V + ++ +A + + E LR+
Sbjct: 118 MRKLCHDIGLILGVGAHMRELRRTRSGPFRERNGLVRLQELSEAIYRWKQEGKEDLLRKY 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I+P+E ++ ++VV+DT V+AI +GA L +PG+ R I+ G+ V L+
Sbjct: 178 ILPIEYAVSHLPKIVVRDTAVDAIAHGANLAVPGIARLHEGIKRGDLVALL 228
>gi|212373344|dbj|BAE96930.2| Cbf5 [Staphylothermus marinus]
Length = 228
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 155/231 (67%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIK++ +E+ GH GTLDPKVTG L V + AT+++ + KEYV V +LH V D
Sbjct: 1 VAWIKKMFELERAGHGGTLDPKVTGVLPVALANATKVIGNVIHTIKEYVMVIQLHTPV-D 59
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ L TG ++QRPPL S+VKR +R R I+ LLE+ DR+++V + CEAGTY
Sbjct: 60 NERLREVLRYFTGVIYQRPPLRSSVKRVIRTRRIHYIDLLEHS-DRYVLVR-VGCEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R + +GL+LGVG HM+ELRR R+G E++ +V M +V +A +L+ N DE YLR++
Sbjct: 118 MRKLAHDIGLLLGVGAHMRELRRTRTGPYKEDETLVRMQEVSEALYLWRNKGDERYLRKI 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I+P+E + +++++DT V+A+ +GA L +PG++R D+ + + V ++
Sbjct: 178 ILPVETAIAHLPKIIIRDTAVDAVAHGAHLAVPGIVRLTKDVALNKTVAIL 228
>gi|126465945|ref|YP_001041054.1| tRNA pseudouridine synthase B [Staphylothermus marinus F1]
gi|126014768|gb|ABN70146.1| tRNA pseudouridine synthase B [Staphylothermus marinus F1]
Length = 256
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 160/253 (63%), Gaps = 3/253 (1%)
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLI 200
+TG L V + AT+++ + KEYV V +LH V D ++ L TG ++QRPPL
Sbjct: 1 MTGVLPVALANATKVIGNVIHTIKEYVMVIQLHTPV-DNERLREVLRYFTGVIYQRPPLR 59
Query: 201 SAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 260
S+VKR +R R I+ LLE+ DR+++V + CEAGTY+R + +GL+LGVG HM+ELR
Sbjct: 60 SSVKRVIRTRRIHYIDLLEHS-DRYVLVR-VGCEAGTYMRKLAHDIGLLLGVGAHMRELR 117
Query: 261 RVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVN 320
R R+G E++ +V M +V +A +L+ N DE YLR++I+P+E + +++++DT V+
Sbjct: 118 RTRTGPYKEDETLVRMQEVSEALYLWRNKGDERYLRKIILPVETAIAHLPKIIIRDTAVD 177
Query: 321 AICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIK 380
A+ +GA L +PG++R D+ + + V ++T KGE VALG A + +A G+V R K
Sbjct: 178 AVAHGAHLAVPGIVRLTKDVALNKTVAILTLKGELVALGTALKSAVEIANMKKGIVVRTK 237
Query: 381 RVVMDRDTYPRKW 393
RV M YP W
Sbjct: 238 RVYMKPGIYPAVW 250
>gi|212373346|dbj|BAE96931.2| Cbf5 [Stetteria hydrogenophila]
Length = 229
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 151/231 (65%), Gaps = 2/231 (0%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAW+KR+ V + GH GTLDP+VTG L V + R TR+V S + KEYVCV +LH V +
Sbjct: 1 VAWVKRMFNVPRAGHGGTLDPRVTGVLPVALHRMTRVVGSVVHSSKEYVCVMQLHRPVEE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ AL G ++QRPPL S+VKR LR++ + E +LLEYD +R+ + I+CEAGTY
Sbjct: 61 -ERLREALRLFEGRIYQRPPLRSSVKRSLRVKRVDEIELLEYDGERY-ALLRIACEAGTY 118
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C +GL+LGVG HM+ELRR R+G E +VT+ +V +A + + LRRV
Sbjct: 119 MRKICWDVGLVLGVGAHMRELRRTRTGPFSEARGLVTLQEVSEALYRLRVDGKDDLLRRV 178
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
++P E + ++VV+DT V ++ +GA L +PG++ DI+ GE V ++
Sbjct: 179 VLPGEYSVCHLPKVVVRDTAVESLVHGASLAVPGVVMLHEDIKRGETVAVL 229
>gi|256252636|dbj|BAH97715.1| Cbf5 [Staphylothermus hellenicus]
Length = 228
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 155/231 (67%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIK++ +E+ GH GTLDPKVTG L V + AT+++ + KEYV V +LH V D
Sbjct: 1 VAWIKKMFELERAGHGGTLDPKVTGVLPVALANATKVIGNVIHTIKEYVMVIQLHAPV-D 59
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ + L+ TG ++QRPPL S+VKR +R R I+ LLE+ DR+++V + CEAGTY
Sbjct: 60 NDRLRKVLKYFTGVIYQRPPLRSSVKRVIRTRRIHYIDLLEHS-DRYVLVR-VGCEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R + +GL+LGVG HM+ELRR R+G E++ +V M +V +A +L+ N DE YLR++
Sbjct: 118 MRKLAHDIGLLLGVGAHMRELRRTRTGPYKEDETLVRMQEVSEALYLWRNKGDERYLRKI 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I+P+E + +++++DT V+AI +GA L +PG+ R D+ + V ++
Sbjct: 178 ILPVETAIAHLPKIIIRDTAVDAIAHGAHLAVPGIARLTRDVAPNKTVAIL 228
>gi|212373360|dbj|BAE96938.2| Cbf5 [Acidianus infernus]
Length = 227
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 150/218 (68%), Gaps = 3/218 (1%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIK++ + K GH GTLDPKV+G L + ++ AT+L+ AGKEY+CV H+KV D++
Sbjct: 3 WIKKMFNLNKVGHGGTLDPKVSGVLPIGLENATKLMTYITKAGKEYICVMETHEKV-DLS 61
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
V + E G ++QRPP+ S+VKR+LR R +++ ++LE D+ L + IS E GTY+R
Sbjct: 62 IVKKIAEEFKGTIYQRPPVRSSVKRRLRTRKVFDIEVLEGKDDK-LFLLRISSEPGTYMR 120
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
+C +G+ILG+G HM+ELRR+RSGI E+ +VT+ +V +A +++ N +DE LR++++
Sbjct: 121 KICHDMGIILGIGAHMRELRRIRSGIFTES-GLVTLQEVSEALYMWKNCKDETDLRKILL 179
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
P+E+ L ++++ D VNAI YGA PG++ ++N
Sbjct: 180 PMEIGLCGIPKIILDDNAVNAIAYGATANAPGIVAYQN 217
>gi|256252646|dbj|BAH97720.1| Cbf5 [Acidianus ambivalens]
Length = 227
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 149/218 (68%), Gaps = 3/218 (1%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIK++ + K GH GTLDPKV+G L + ++ AT+L+ AGKEY+CV H+KV D++
Sbjct: 3 WIKKMFNLSKVGHGGTLDPKVSGVLPIGLENATKLMTYITKAGKEYICVMETHEKV-DLS 61
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
V + E G ++QRPP+ S+VKR+LR R +++ ++LE D+ L + IS E GTY+R
Sbjct: 62 IVKKIAEEFKGTIYQRPPVRSSVKRRLRTRKVFDIEVLEGKDDK-LFLLRISSEPGTYMR 120
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
+C +G+ILG G HM+ELRR+RSGI E+ + T+ +V +A +++ N +DE LR++++
Sbjct: 121 KICHDMGIILGTGAHMRELRRIRSGIFTES-GLFTLQEVSEALYMWKNCKDETDLRKILL 179
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
P+E+ L ++++ D VNAI YGA +PG++ ++N
Sbjct: 180 PMEIGLCGIPKIILDDNAVNAIAYGATANVPGIVAYQN 217
>gi|424812858|ref|ZP_18238098.1| pseudouridine synthase [Candidatus Nanosalinarum sp. J07AB56]
gi|339757080|gb|EGQ40663.1| pseudouridine synthase [Candidatus Nanosalinarum sp. J07AB56]
Length = 319
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 172/306 (56%), Gaps = 5/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + + G++ LDKP P S++V +W+++ L + KTGH GTLDP TG L V
Sbjct: 18 GCVPSSRSAEELLERGLVVLDKPYGPPSNQVSSWLRKSLDLGKTGHFGTLDPHATGVLPV 77
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++R TRL + KEYV L + + + A+ +AL+ G Q PP SAV+R+
Sbjct: 78 GLNRGTRLSPALSETRKEYVFEVSLSEPISE-AEARKALKDFVGENRQVPPEKSAVERKE 136
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +YE++LLE ++ I CE+G YVR + LG LGV M +LRR G +
Sbjct: 137 RSRELYEAELLE--CLGCTLLARIRCESGFYVRVLVDQLGDQLGVDAEMPDLRRTSQGEI 194
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ + ++A Y + D + LR V+ P E + +L +KDT VNA+ GA
Sbjct: 195 SE-DESVTLQEAVEAYHEYSDTGDVSALRGVVKPPETAVGHLPKLAIKDTAVNAVANGAD 253
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ R + DI G+ V +MT KGE VAL AEMT+ M + G A ++ V M+ +
Sbjct: 254 LGAGGISRLQEDISEGDRVAIMTLKGELVALATAEMTSEQMYE-ERGAAADLESVHMEPE 312
Query: 388 TYPRKW 393
YPR+W
Sbjct: 313 RYPRRW 318
>gi|256252640|dbj|BAH97717.1| Cbf5 [Pyrodictium brockii]
Length = 228
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 148/231 (64%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAW+KR+ + K GH GTLDPKVTG L V ++ AT+++ KEY+CV +LH VP+
Sbjct: 1 VAWVKRMFGLSKAGHGGTLDPKVTGVLPVALEEATKVIGLVVHTSKEYMCVMQLHRPVPE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ R L G ++QRPPL S+VKR LR++ IYE +LLEY+ R+ + + CEAGTY
Sbjct: 61 -EELRRVLGMFVGEIYQRPPLRSSVKRSLRVKRIYEIELLEYN-GRY-ALMRVLCEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C GLILGVG HM+ELRR +SG E +V + ++ +A + + N E LR
Sbjct: 118 MRKLCHDAGLILGVGAHMRELRRTKSGPFREQHGLVRLQELSEALYRWKNEGKEDLLRSY 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I P+E ++ ++V++DT V+AI +GA L +PG+ R I+ G+ V L
Sbjct: 178 IKPVEYAVSHLPKIVIRDTAVDAIAHGANLAVPGIARLHEGIKRGDLVALF 228
>gi|212373348|dbj|BAE96932.2| Cbf5 [Sulfophobococcus zilligii]
Length = 228
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 152/230 (66%), Gaps = 3/230 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKR+ VEK GH GTLDPKVTG L V + +T+++ + + KEYV V +LHD V +
Sbjct: 1 VAWIKRMFNVEKAGHGGTLDPKVTGVLPVGLASSTKVIGNVIHSIKEYVMVVQLHDLV-E 59
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
KV +E G ++QRPPL S+VKR +R++TIYE ++L DV ++ + C+ GTY
Sbjct: 60 RKKVEEVVEYFKGQIYQRPPLRSSVKRSIRVKTIYEIEIL--DVQDKFLLLRVLCDPGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R + +GLILGVG HM+ELRR R+G E++ +V++ +V +A +L+ DE YL++V
Sbjct: 118 MRKLAHDIGLILGVGAHMRELRRTRTGPFREDETLVSLQEVSEALYLWRTRGDERYLKKV 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
++P+EV +++V DT V+AI +GA L PG+ ++E G+ V +
Sbjct: 178 VLPVEVSTAHLPKILVLDTAVDAIAHGANLAAPGVSMLTRNVEAGKTVAI 227
>gi|212373356|dbj|BAE96936.2| Cbf5 [Pyrodictium occultum]
Length = 228
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 148/231 (64%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAW+KR+ + K GH GTLDPKVTG L V ++ AT+++ KEY+CV +LH VP+
Sbjct: 1 VAWVKRMFGLSKAGHGGTLDPKVTGVLPVALEEATKVIGLVVHTSKEYMCVMQLHRPVPE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ R L G ++QRPPL S+VKR LR++ IYE +LLEY+ R+ + + CEAGTY
Sbjct: 61 -EELRRVLGMFVGEIYQRPPLRSSVKRSLRVKRIYEIELLEYN-GRY-ALMRVLCEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C GLILGVG HM+ELRR +SG E +V + ++ +A + + N E LR
Sbjct: 118 MRKLCHDAGLILGVGAHMRELRRTKSGPFREQHGLVRLQELSEALYRWKNEGKEDLLRSY 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I P+E ++ ++V++DT V+AI +GA L +PG+ R I+ G+ V L
Sbjct: 178 IKPVEYAVSHLPKIVIRDTAVDAIAHGANLAVPGIARLHEGIKRGDLVSLF 228
>gi|212373352|dbj|BAE96934.2| Cbf5 [Thermosphaera aggregans DSM 11486]
Length = 228
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 152/231 (65%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAW+K++ ++K GH GTLDPKVTG L V +D +T+++ + + KEYV V + H V +
Sbjct: 1 VAWVKKLFNIDKAGHGGTLDPKVTGVLPVGLDNSTKVIGNVVHSVKEYVMVIQFHGDV-E 59
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
+ K+ AL+ TG ++QRPPL S+VKR LR R I+E +LL++ DR +V SC+ GTY
Sbjct: 60 IGKLVEALKYFTGEIYQRPPLRSSVKRVLRTRRIHEIELLDFK-DRFALV-RASCDPGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R + +GL GVG HM+ELRR R+G E++ +V + DV +A +L+ +DE LRRV
Sbjct: 118 MRKLAHDIGLYTGVGAHMRELRRTRTGPYREDETLVKLQDVSEALYLWRVEKDERMLRRV 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I+P+E +T ++V+ D V+AI +GA L PG++R +++ G V +
Sbjct: 178 ILPVETAVTHLPKIVINDLAVDAIAHGASLAAPGVVRLTDNVSAGATVAVF 228
>gi|212373358|dbj|BAE96937.2| Cbf5 [Pyrolobus fumarii]
Length = 228
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 149/231 (64%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKR+ + K GH GTLDPKVTG L V ++ AT+++ KEY+CV +LH+ V +
Sbjct: 1 VAWIKRMFGLSKAGHGGTLDPKVTGVLPVALEEATKIIGMVVHTPKEYICVMQLHEPVEE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
K+ A++ T ++QRPPL S+VKR LR +TIYE +LLEY R+ + + C+ GTY
Sbjct: 61 -KKLLEAIKVFTSTIYQRPPLRSSVKRSLRTKTIYEIELLEYT-GRY-ALMRVLCDPGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C +GL LGVG HM+ELRR +SG E +V + D+ +A + + + LR+
Sbjct: 118 MRKLCHDIGLYLGVGAHMRELRRTKSGPFREAYGLVKLQDLSEALYRWKQEGKDDLLRKY 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I+P+E + K++V++D+ V+AI +GA L +PG+ R DI+ G+ V +
Sbjct: 178 ILPMEYAVAHLKKVVIRDSAVDAIAHGAHLAVPGIARLHADIKKGDVVAIF 228
>gi|255645843|gb|ACU23412.1| unknown [Glycine max]
Length = 257
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 106/126 (84%), Gaps = 4/126 (3%)
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+ALGIAEMTTAVMATCDHGVVA+IKRVVMDRDTYP KWGLGPRASMKK+LI+E
Sbjct: 1 MTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPWKWGLGPRASMKKRLISE 60
Query: 409 GKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAE---QTVAEKETAG-VKKRKLD 464
GKLDKHGK NEKTPQEW RN+VLP GGDSV+A LAAA E + +KE G KKRK
Sbjct: 61 GKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEPEDDKIQKKEGDGEGKKRKKH 120
Query: 465 ASGDSP 470
S DSP
Sbjct: 121 ESTDSP 126
>gi|256252634|dbj|BAH97714.1| Cbf5 [Ignicoccus pacificus]
Length = 230
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 150/231 (64%), Gaps = 1/231 (0%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIK++ +EK GH GTLDPKVTG L V + AT+++ +GKEYV V + HD V +
Sbjct: 1 VAWIKKMFNLEKAGHGGTLDPKVTGVLPVALAEATKVIHYVMLSGKEYVMVIQFHDAVKE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
V L+ L G ++QRPPL S+VKRQLR + +Y L+E+ +R + + + E+GTY
Sbjct: 61 -QDVIENLKYLVGEIYQRPPLRSSVKRQLRTKKVYYIHLIEFYPERRMALVRVGSESGTY 119
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R + LGL+LG G HM+ELRR RSG E N+V M ++ +A++L+D+ +D++ L++
Sbjct: 120 MRKIAHDLGLLLGTGAHMRELRRTRSGPFHEEYNLVRMQELSEAKFLWDHLKDDSLLKKY 179
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
IMP E + ++++V D V+AI +GA + PG+ + I+ G+ V ++
Sbjct: 180 IMPCEYAVCHMQKIMVGDGAVDAIAHGAHVAAPGVAALTDGIKKGDVVAIV 230
>gi|424813549|ref|ZP_18238742.1| pseudouridine synthase [Candidatus Nanosalina sp. J07AB43]
gi|339758696|gb|EGQ43950.1| pseudouridine synthase [Candidatus Nanosalina sp. J07AB43]
Length = 319
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 165/306 (53%), Gaps = 6/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + + GI+ +DKP P+S++V WIK+ L ++KTGH GTLDP TG L V
Sbjct: 17 GNLPENRSVEKLLDEGIVIIDKPFGPTSNQVSTWIKQELDIKKTGHFGTLDPNATGVLPV 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ ATRL ++ A KEYV A L D + K+ L G Q PP SAVKR+
Sbjct: 77 ALNSATRLNEALAKADKEYVFEAELQDGKTE-EKIREELNTFKGTNKQVPPEKSAVKREE 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +E ++ + CE+G YVR + LG LG M ELRR G +
Sbjct: 136 RQREVYSISFIEK--LEETILGKVRCESGFYVRVLVDQLGDKLGTEAEMTELRRTMQGEI 193
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D + DV+D Q+ + +++L ++ P E + ++ VKD+ VNA+ GA
Sbjct: 194 TE-DEASKIQDVVD-QYHFHLEGKDSFLEEILYPREKAVEHLNKVAVKDSAVNAVANGAD 251
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ + + DI GE + +MT KGE VAL AEM + + D G A +K V MD
Sbjct: 252 LGASGISKLQGDINEGETIAIMTLKGELVALAEAEMNSQSLYDGD-GTAATLKSVHMDPK 310
Query: 388 TYPRKW 393
TYP++W
Sbjct: 311 TYPKRW 316
>gi|448583678|ref|ZP_21646901.1| H/ACA RNA-protein complex component Cbf5p [Haloferax gibbonsii ATCC
33959]
gi|445729031|gb|ELZ80630.1| H/ACA RNA-protein complex component Cbf5p [Haloferax gibbonsii ATCC
33959]
Length = 289
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 150/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
+Y+ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + +
Sbjct: 124 EVYDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATDPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D +VT+HD+ DA + DE++LR V+ P E L+ + V ++ I GA +
Sbjct: 182 D-LVTLHDLADA-LAFAEEGDESWLRDVVSPAERALSHLPSVTVANSAAREIANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADASRGDLVACYTDDGSAVCLG 268
>gi|256252648|dbj|BAH97721.1| Cbf5 [Acidianus brierleyi]
Length = 225
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 147/219 (67%), Gaps = 6/219 (2%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH-DKVPDV 179
W+K++ + K GH GTLDPKVTG L + ++ AT+++ AGKEY+CV ++H D D+
Sbjct: 3 WVKKMFNINKVGHGGTLDPKVTGVLPIGLENATKIMNYVTEAGKEYICVMQVHCDIEKDL 62
Query: 180 AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
K +E G ++QRPP+ S+VKR+LR RT+ E +LLE + + IS E GTY+
Sbjct: 63 LK--SIIEKFKGKIYQRPPVRSSVKRRLRFRTVNEIELLE--TYNRMALLRISSEPGTYM 118
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
R +C G++LG G HM+ELRR+RSGI E N+VT+ +V +A +++ + +DE LR+++
Sbjct: 119 RKICHDAGILLGCGAHMRELRRIRSGIFTEK-NLVTLQEVSEALYMWKSCKDEEDLRKIL 177
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
+P+E+ ++V+ D V+AI YGA +MIPG++ F+N
Sbjct: 178 IPMEMAFCGIPKIVIDDNAVDAIAYGASVMIPGIVAFQN 216
>gi|448565614|ref|ZP_21636481.1| H/ACA RNA-protein complex component Cbf5p [Haloferax prahovense DSM
18310]
gi|445715358|gb|ELZ67114.1| H/ACA RNA-protein complex component Cbf5p [Haloferax prahovense DSM
18310]
Length = 289
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 150/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEDRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
+Y+ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + +
Sbjct: 124 EVYDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATTPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D +VT+HD+ DA + DE++LR V+ P E L+ + + ++ + GA +
Sbjct: 182 D-LVTLHDLADA-LAFAEEGDESWLRDVVSPAERALSHLPSVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADASRGDLVACFTDDGSAVCLG 268
>gi|212373342|dbj|BAE96929.2| Cbf5 [Ignicoccus islandicus]
Length = 230
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 148/231 (64%), Gaps = 1/231 (0%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKR+ ++K GH GTLDPKVTG L V AT+++ +GKEYV V + HD +
Sbjct: 1 VAWIKRMFNLDKAGHGGTLDPKVTGVLPVAFKEATKVIHYVMLSGKEYVMVIQFHDAFNE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
V L+ L G ++QRPPL S+VKRQLR + +Y L+E+ +R +V+ + E+GTY
Sbjct: 61 -KDVIENLKYLVGEIYQRPPLRSSVKRQLRTKKVYYIHLIEFYPERRMVMVRVGSESGTY 119
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R + LGL++G+G HM+ELRR RSG E N+VTM ++ +A++L++ +D++ LR+
Sbjct: 120 MRKIAHDLGLLMGIGAHMRELRRTRSGPFHEGYNLVTMQELSEAKFLWEEKKDDSLLRKY 179
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+MP E + ++++V D V+AI +GA + PG+ + I G+ V +
Sbjct: 180 VMPCEYSVCHMQKVMVMDGAVDAIAHGAHVAAPGVAALTDGIRKGDVVAIF 230
>gi|448545831|ref|ZP_21626242.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-646]
gi|448547989|ref|ZP_21627333.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-645]
gi|448556853|ref|ZP_21632447.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-644]
gi|445703641|gb|ELZ55567.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-646]
gi|445714691|gb|ELZ66449.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-645]
gi|445716202|gb|ELZ67953.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. ATCC
BAA-644]
Length = 289
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 150/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY+ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + +
Sbjct: 124 EIYDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATDPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D +VT+HD+ DA + DE++LR V+ P E L+ + + ++ + GA +
Sbjct: 182 D-LVTLHDLKDA-LAFAAEGDESWLRDVVSPAERALSHLPSVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADASRGDLVACFTDDGSAVCLG 268
>gi|448604882|ref|ZP_21657927.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sulfurifontis
ATCC BAA-897]
gi|445743203|gb|ELZ94686.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sulfurifontis
ATCC BAA-897]
Length = 289
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 150/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY+ LLE DR + I CE+GTYVR +C LGL LG GGHM LRR + +
Sbjct: 124 EIYDLDLLEVK-DRQ-ALLRIRCESGTYVRKLCHDLGLALGTGGHMGHLRRTATDPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D +VT+HD+ DA + DE++LR V+ P E L+ + + ++ + GA +
Sbjct: 182 D-LVTLHDLKDA-LAFAAEGDESWLRDVVSPAERALSHLPSVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADAARGDLVACFTDDGSAVCLG 268
>gi|448600354|ref|ZP_21655937.1| H/ACA RNA-protein complex component Cbf5p [Haloferax alexandrinus
JCM 10717]
gi|445735292|gb|ELZ86843.1| H/ACA RNA-protein complex component Cbf5p [Haloferax alexandrinus
JCM 10717]
Length = 289
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 150/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY+ LLE DR + I CE+GTY+R +C LGL+LG GGHM LRR + +
Sbjct: 124 EIYDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDLGLVLGTGGHMGHLRRTATDPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D + T+HD+ DA + DE++LR V+ P E L+ + + ++ + GA +
Sbjct: 182 D-LATLHDLKDA-LAFAAEGDESWLRDVVSPAERALSHLPSVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADAARGDLVACFTDDGSAVCLG 268
>gi|161349979|ref|NP_280486.2| H/ACA RNA-protein complex component Cbf5p [Halobacterium sp. NRC-1]
Length = 310
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 161/297 (54%), Gaps = 23/297 (7%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+ +G++NLDKP PS+H+V AWI+ ++ VEK H+GTLDPKVTG L V ATR+ +
Sbjct: 25 LSFGVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTGTATRIAPAL 84
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
KEYV V LHD P + + +EA TG ++Q+PP SAV R+LR RT+Y+ +L
Sbjct: 85 LEGFKEYVAVLELHDDPPRI--LPDVIEAFTGEIYQKPPKKSAVARRLRTRTVYDLDVL- 141
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
DVD V+ I CE+GTY+R +C +G LG HM LRR + + D +VT+HD+
Sbjct: 142 -DVDGRQVLLRIRCESGTYIRKLCHDIGRALGTNAHMGHLRRSATTPFDDTD-LVTLHDL 199
Query: 280 MDA-QWLYDNYRDEA------YLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
DA WL D E LR + P E LT RL + D+ + + GA + PG
Sbjct: 200 ADAVAWLRDTDDTEPPDAPADALRAAVQPAERALTHLPRLTIADSAAHEVATGAPVYAPG 259
Query: 333 LL---RFENDIEVGEEVVLMTTKGEAVALG--IAEMTTAVMATCDHGVVARIKRVVM 384
++ G V T G AV LG + + D GVV ++RV++
Sbjct: 260 VIDTTALPTPPADGALVACYTAGGTAVCLGRLVGD------PDADAGVVVALERVLV 310
>gi|169236401|ref|YP_001689601.1| H/ACA RNA-protein complex component Cbf5p [Halobacterium salinarum
R1]
gi|13959593|sp|Q9HPA4.1|TRUB_HALSA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|226708668|sp|B0R686.1|TRUB_HALS3 RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|10581191|gb|AAG19966.1| tRNA-pseudouridine synthase [Halobacterium sp. NRC-1]
gi|167727467|emb|CAP14255.1| tRNA/rRNA pseudouridine synthase Cbf5 [Halobacterium salinarum R1]
Length = 301
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 161/297 (54%), Gaps = 23/297 (7%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+ +G++NLDKP PS+H+V AWI+ ++ VEK H+GTLDPKVTG L V ATR+ +
Sbjct: 16 LSFGVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTGTATRIAPAL 75
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
KEYV V LHD P + + +EA TG ++Q+PP SAV R+LR RT+Y+ +L
Sbjct: 76 LEGFKEYVAVLELHDDPPRI--LPDVIEAFTGEIYQKPPKKSAVARRLRTRTVYDLDVL- 132
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
DVD V+ I CE+GTY+R +C +G LG HM LRR + + D +VT+HD+
Sbjct: 133 -DVDGRQVLLRIRCESGTYIRKLCHDIGRALGTNAHMGHLRRSATTPFDDTD-LVTLHDL 190
Query: 280 MDA-QWLYDNYRDEA------YLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
DA WL D E LR + P E LT RL + D+ + + GA + PG
Sbjct: 191 ADAVAWLRDTDDTEPPDAPADALRAAVQPAERALTHLPRLTIADSAAHEVATGAPVYAPG 250
Query: 333 LL---RFENDIEVGEEVVLMTTKGEAVALG--IAEMTTAVMATCDHGVVARIKRVVM 384
++ G V T G AV LG + + D GVV ++RV++
Sbjct: 251 VIDTTALPTPPADGALVACYTAGGTAVCLGRLVGD------PDADAGVVVALERVLV 301
>gi|300710518|ref|YP_003736332.1| H/ACA RNA-protein complex component Cbf5p [Halalkalicoccus jeotgali
B3]
gi|448294840|ref|ZP_21484917.1| H/ACA RNA-protein complex component Cbf5p [Halalkalicoccus jeotgali
B3]
gi|299124201|gb|ADJ14540.1| H/ACA RNA-protein complex component Cbf5p [Halalkalicoccus jeotgali
B3]
gi|445585822|gb|ELY40112.1| H/ACA RNA-protein complex component Cbf5p [Halalkalicoccus jeotgali
B3]
Length = 289
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 154/269 (57%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P +R L + +G++NLDKP PS+H+V AW++ ++ VEK H+GTLDPKVTG L V
Sbjct: 6 PEERDLGSLVEFGVVNLDKPPGPSAHQVSAWVRDLVGVEKAAHAGTLDPKVTGCLPVLTG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATRL + KEYV V LH P A + + G ++Q+PP SAV R+LR+R
Sbjct: 66 TATRLAPAFLEGEKEYVAVLELHGPAP--ADIEAVIGEFEGDLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
TIYE LLE V + I CE+GTYVR +C LGL LG G HM LRR + ++
Sbjct: 124 TIYELDLLE--VQERKALLKIRCESGTYVRKLCHDLGLALGTGAHMGHLRRTATTPF-DD 180
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
++ +++D+ DA + DEA LR ++ P E L R+ V + + I +GA++
Sbjct: 181 ASLCSLYDLADA-IAFAEEGDEAPLRDLLEPGERALAHLPRVTVAPSAAHEIAHGAQVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG++ E D + V T +G AV LG
Sbjct: 240 PGVIDAEGDPDDEPLVACYTPEGSAVCLG 268
>gi|448578102|ref|ZP_21643537.1| H/ACA RNA-protein complex component Cbf5p [Haloferax larsenii JCM
13917]
gi|445726643|gb|ELZ78259.1| H/ACA RNA-protein complex component Cbf5p [Haloferax larsenii JCM
13917]
Length = 289
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 162/294 (55%), Gaps = 10/294 (3%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R L + +G++NLDKP PS+H+V W++ + +++ HSGTLDPKVTG L + +
Sbjct: 6 PENRSLDALLSFGVVNLDKPPGPSAHQVTGWVRDMADLDRAAHSGTLDPKVTGCLPILLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIESTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY+ LLE DR + I CE+GTY+R +C +GL LG GGHM LRR + ++
Sbjct: 124 EIYDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDIGLALGTGGHMGHLRRTATDPF-DD 180
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
+V +HD+ DA + DE+++R V+ P E LT + + D + GA +
Sbjct: 181 TTLVDIHDLKDA-LAFAEEGDESWIRDVVSPAERALTHLPSVTIADNAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PG+L +ND G+ V T G AV LG E+T A + G V ++ V++
Sbjct: 240 PGVLAVDNDASRGDLVACYTENGSAVCLG--ELTGD--ADAESGTVVSLESVLV 289
>gi|124484901|ref|YP_001029517.1| hypothetical protein Mlab_0072 [Methanocorpusculum labreanum Z]
gi|124362442|gb|ABN06250.1| pseudouridylate synthase TruB domain protein [Methanocorpusculum
labreanum Z]
Length = 282
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 164/280 (58%), Gaps = 10/280 (3%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII +DKP P+SH+V AW+ ++L+ + GHSGTLDP V+G L+V + +A RL
Sbjct: 5 GIILVDKPRGPTSHQVAAWVGKMLKSD-VGHSGTLDPMVSGVLVVMLGKAVRLAPLLLQH 63
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYV RLH +P +V ++ TG V+QRPP SAVKR LRIR IY +L+ D+
Sbjct: 64 EKEYVACMRLHADIPR-ERVEEVVKQFTGRVYQRPPRRSAVKRALRIRVIYRIELI--DM 120
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
LV+ I CEAGTY+R++CVH+G +LG GG M ELRR +SG D T+H++ DA
Sbjct: 121 QDRLVLLKIRCEAGTYIRSVCVHIGNVLGCGGQMIELRRTKSGGF-SCDEAHTLHEIRDA 179
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L +DEA L +I+P E + ++V++D A+ GA L G + E
Sbjct: 180 VEL----KDEAALSAMILPPEQAIGDIPKIVIRDKAAKAVANGAMLAGVGAISVEK-FSR 234
Query: 343 GEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
G+ V L+T G+ +AL + + + G++AR RV
Sbjct: 235 GQSVALITQSGKLIALAESLFDSDKIDCGKPGLIARSTRV 274
>gi|212373381|dbj|BAE96948.2| Cbf5 [Thermocladium modestius]
Length = 227
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 145/223 (65%), Gaps = 4/223 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
V+WIK+++ +E+ GH+GTLDP+V+G L V + +T++++ KEY+ V LH D
Sbjct: 1 VSWIKKMMGLERAGHAGTLDPRVSGVLPVALGDSTKVLQGISHEDKEYIAVMTLHGDASD 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ L TG ++QRPP+ SAVKRQLR R +Y K+LE D V+ EAGTY
Sbjct: 61 -ERIREVLAEFTGEIYQRPPVKSAVKRQLRTRRVYSLKMLERD--GRYVLLDARVEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C +G +LGVG +M+ELRRVR G GE D VT+HD+ DA +L+ Y DE+ LRR
Sbjct: 118 IRKLCYDVGEVLGVGANMRELRRVRVGCFGE-DEAVTLHDLADALYLWKQYGDESLLRRY 176
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
+ P+E ++ R+ ++D+ V+++ +GA L PG+ + E+ +E
Sbjct: 177 VKPVEYMVKHLPRIFIRDSAVDSVAHGAALAAPGVAKIEDGVE 219
>gi|448592874|ref|ZP_21651921.1| H/ACA RNA-protein complex component Cbf5p [Haloferax elongans ATCC
BAA-1513]
gi|445730900|gb|ELZ82487.1| H/ACA RNA-protein complex component Cbf5p [Haloferax elongans ATCC
BAA-1513]
Length = 289
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 163/294 (55%), Gaps = 10/294 (3%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R L + +G++NLDKP PS+H+V W++ + +++ HSGTLDPKVTG L + +
Sbjct: 6 PEDRSLDALLSFGVVNLDKPPGPSAHQVTGWVRDMADLDRAAHSGTLDPKVTGCLPILLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIESTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY+ LLE + DR + I CE+GTY+R +C +GL LG GGHM LRR + ++
Sbjct: 124 EIYDLDLLEVN-DRQ-ALLRIRCESGTYIRKLCHDIGLALGTGGHMGHLRRTATDPF-DD 180
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
+V +HD+ DA + DE+++R V+ P E LT + + D + GA +
Sbjct: 181 TTLVDIHDLKDA-LAFAEEGDESWIRDVVSPAERALTHLPSVTIADNAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PG+L ++D G+ V T G AV LG E+T A + G V ++ V++
Sbjct: 240 PGVLAVDDDASRGDLVACYTENGSAVCLG--ELTGD--ADAESGTVVSLESVLV 289
>gi|358439992|pdb|3ZV0|C Chain C, Structure Of The Shq1p-Cbf5p Complex
gi|358439993|pdb|3ZV0|D Chain D, Structure Of The Shq1p-Cbf5p Complex
Length = 195
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 107/125 (85%)
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+VL+TTKGEA+A+ I
Sbjct: 67 PLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAI 126
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
A+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++ A+GKLDK+G++NE
Sbjct: 127 AQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMKADGKLDKYGRVNEN 186
Query: 421 TPQEW 425
TP++W
Sbjct: 187 TPEQW 191
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 44/56 (78%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G
Sbjct: 11 DFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSG 66
>gi|374724505|gb|EHR76585.1| tRNA pseudouridine synthase b [uncultured marine group II
euryarchaeote]
Length = 322
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P R + + G I LDKPA P+SH+V AW + + +E+ GH GTLDP TG L +
Sbjct: 17 GTAPDDRTVEQRLAGGFILLDKPAGPTSHQVAAWARDLFGLERLGHGGTLDPFATGVLPL 76
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+A ++ K K Y+CV R +V D + +A+ LTG V+ PP +SAVK Q+
Sbjct: 77 MAGKAMKVTKKILNHKKSYICVFRFASEV-DEDALNKAMRQLTGRVYNVPPEVSAVKVQV 135
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R I+ + + D + ++ + CEAGTY+RTM LGL+L + ++ELRR SG+
Sbjct: 136 RTRKIFSFE--QLDRSGNDMIARVHCEAGTYIRTMARDLGLLLNMKIQLKELRRDISGVF 193
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
D+ VT+ ++ DA WL+ L R+I P+E LL VKD+ A+ +GA
Sbjct: 194 -TLDDCVTLQELADAVWLWKECDKPEALLRIIHPIEKLLLDLPSATVKDSAAAALAHGAP 252
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L+ PGL+ + I G+E+ + T K EAV + T +A+ G VAR V++D D
Sbjct: 253 LLRPGLVSIASGIPSGKEIYVQTMKNEAVGVVTLTANTDDIASMSEGEVARPSMVLLDGD 312
Query: 388 TYPRKW 393
YPR+W
Sbjct: 313 VYPRRW 318
>gi|448569295|ref|ZP_21638555.1| H/ACA RNA-protein complex component Cbf5p [Haloferax lucentense DSM
14919]
gi|445724428|gb|ELZ76060.1| H/ACA RNA-protein complex component Cbf5p [Haloferax lucentense DSM
14919]
Length = 289
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 149/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEHRSVADLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
I++ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + +
Sbjct: 124 EIHDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATDPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D + T+HD+ DA + DE++LR V+ P E L+ + + ++ + GA +
Sbjct: 182 D-LATLHDLKDA-LAFAAEGDESWLRDVVSPAERALSHLPSVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADAARGDLVACFTDDGSAVCLG 268
>gi|409722712|ref|ZP_11270127.1| H/ACA RNA-protein complex component Cbf5p [Halococcus hamelinensis
100A6]
gi|448724292|ref|ZP_21706800.1| H/ACA RNA-protein complex component Cbf5p [Halococcus hamelinensis
100A6]
gi|445785962|gb|EMA36743.1| H/ACA RNA-protein complex component Cbf5p [Halococcus hamelinensis
100A6]
Length = 295
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 150/265 (56%), Gaps = 13/265 (4%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G++NLDKP PS+H+V W++ ++ VE+ H+GTLDPKVTG L + + ATR+ +
Sbjct: 16 FGVVNLDKPPGPSAHQVTGWVRDLVGVERAAHAGTLDPKVTGCLPILLGDATRMAQVFLE 75
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
KEYV V LH P A V L G ++Q+PP SAV R+LR+RTI++ LE +
Sbjct: 76 GDKEYVAVLELHKPAP--ANVENVLAEFEGPIYQKPPKKSAVARRLRVRTIHDLTPLETE 133
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
R ++ I CE+GTYVR +C LGL LG GGHM +LRR + ++ +V++HD+ D
Sbjct: 134 ERR--ILLRIRCESGTYVRKLCHDLGLALGTGGHMGDLRRTSTTPF-DDTKLVSLHDLAD 190
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN-DI 340
A D+ D L V+ P E LT R+ + D+ + GA + PG+L EN D
Sbjct: 191 ALAFADD-GDPEPLSDVVRPAERALTHLPRVTIADSAAREVAEGAPVYAPGVLDVENTDP 249
Query: 341 EVGEE------VVLMTTKGEAVALG 359
E + V T G AV LG
Sbjct: 250 ETVDPKDDEPLVACYTPDGAAVCLG 274
>gi|212373368|dbj|BAE96942.2| Cbf5 [Sulfolobus acidocaldarius]
Length = 227
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 148/218 (67%), Gaps = 3/218 (1%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
W+K++ + K GH GTLDPKVTG L + ++ AT+L+ +GKEY+C+ ++H V D
Sbjct: 3 WVKKLFNITKAGHGGTLDPKVTGVLPIGLENATKLMNYISKSGKEYICLLQMHCNV-DQK 61
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
++ + G ++Q+PP+ S+VKR++R R IY +L D+ L++ + +AGTY+R
Sbjct: 62 ELKEIISQFVGEIYQKPPVRSSVKRRIRKRRIYAIDIL--DMQDKLILLRVQSDAGTYMR 119
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
+C +G+I G G HM+ELRR+RSGI E NMVT+ +V ++ +LY N +DE+ LRR+++
Sbjct: 120 KLCHDVGVIAGCGSHMRELRRIRSGIFTEKTNMVTLQEVSESLYLYRNCKDESELRRILL 179
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
P+E + +++V DT VNAI YGAKL +PG+L ++N
Sbjct: 180 PMEYGVCGIPKVIVSDTAVNAITYGAKLNLPGILAYQN 217
>gi|433435459|ref|ZP_20408119.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. BAB2207]
gi|432192359|gb|ELK49244.1| H/ACA RNA-protein complex component Cbf5p [Haloferax sp. BAB2207]
Length = 289
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 149/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
I++ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + +
Sbjct: 124 EIHDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATDPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D + T+HD+ DA + DE++LR V+ P E L+ + + ++ + GA +
Sbjct: 182 D-LATLHDLKDA-LAFAAEGDESWLRDVVSPAERALSHLPSVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADAARGDLVACFTDDGSAVCLG 268
>gi|322372122|ref|ZP_08046663.1| H/ACA RNA-protein complex component Cbf5p [Haladaptatus
paucihalophilus DX253]
gi|320548131|gb|EFW89804.1| H/ACA RNA-protein complex component Cbf5p [Haladaptatus
paucihalophilus DX253]
Length = 290
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 163/295 (55%), Gaps = 12/295 (4%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P +R + + +G+INLDKP PS+H+V AW++ + VE+ H+GTLDPKVTG L
Sbjct: 7 PSERSPAELLEFGVINLDKPPGPSAHQVAAWVRDLCEVEQAAHAGTLDPKVTGCLPTLTG 66
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
ATRL + KEYV V LH+ P D+ + EA ++Q+PP SAV R+LR+
Sbjct: 67 SATRLSQVFLEGSKEYVSVLELHETAPADIEAIVSEFEA---PLYQKPPRKSAVSRKLRV 123
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
R IYE +LE DR + I CE+GTY+R +C +GL LG G HM LRR + +
Sbjct: 124 REIYELDVLEVQ-DRK-ALLGIRCESGTYIRKLCHDIGLALGTGAHMGHLRRTATDPFDD 181
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
D +V +HD+ DA + ++ +LR+++ P E LT + + + + +GA++
Sbjct: 182 TD-LVALHDLSDALARWREEDEDDWLRKIVRPAEDALTHLPSVTIAPSAAEQVAHGAQVY 240
Query: 330 IPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PG++ E + E + V T G AV LG A D G V ++RV++
Sbjct: 241 APGVIEAE-EAERDQLVACHTPNGAAVCLG----RMVGDADADEGTVVELERVLV 290
>gi|448610556|ref|ZP_21661231.1| H/ACA RNA-protein complex component Cbf5p [Haloferax mucosum ATCC
BAA-1512]
gi|445744648|gb|ELZ96121.1| H/ACA RNA-protein complex component Cbf5p [Haloferax mucosum ATCC
BAA-1512]
Length = 289
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 150/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + +++ HSGTLDPKVTG L + +
Sbjct: 6 PEDRSVGDLLSFGVVNLDKPPGPSAHQVTGWVRDMAGLDRAAHSGTLDPKVTGCLPILLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHGPAP--ADIETTVAEFETKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY+ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + ++
Sbjct: 124 EIYDLDLLEVQ-DRQ-ALLCIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATDPF-DD 180
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
+V +HD+ DA + DE+++R ++ P E LT + + + + GA +
Sbjct: 181 STLVDLHDLKDA-LAFAEEGDESWIRDIVSPAERALTHLPAVTIARSAAREVATGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ ++D G+ V T G AV LG
Sbjct: 240 PGVFDVDDDASRGDLVACFTDDGAAVCLG 268
>gi|198435755|ref|XP_002131921.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 159
Score = 186 bits (472), Expect = 3e-44, Method: Composition-based stats.
Identities = 84/118 (71%), Positives = 103/118 (87%), Gaps = 1/118 (0%)
Query: 48 DFIIKPQSFTP-SIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
DF+I+P+ P ++TS WP+LLKN+++LN+RT HYTPLP G SPLKR + +Y+R G IN
Sbjct: 27 DFLIEPEDKPPPKLNTSDWPLLLKNHNQLNIRTNHYTPLPFGCSPLKRNIHEYVRTGFIN 86
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
LDKPANPSSHEVVAW++RIL+VEKTGHSGTLDPKVTG LIVC++RATRLVKSQQ AG+
Sbjct: 87 LDKPANPSSHEVVAWLRRILKVEKTGHSGTLDPKVTGCLIVCVERATRLVKSQQSAGQ 144
>gi|399576888|ref|ZP_10770643.1| tRNA pseudouridine synthase b [Halogranum salarium B-1]
gi|399238332|gb|EJN59261.1| tRNA pseudouridine synthase b [Halogranum salarium B-1]
Length = 288
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 161/294 (54%), Gaps = 10/294 (3%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P +R + + + +G++NLDKP PS+H+V W++ + VE+ H+GTLDPKVTG L +
Sbjct: 5 PAERDVDELLDFGVVNLDKPPGPSAHQVSGWVRDLAGVEQAAHAGTLDPKVTGCLPTLLG 64
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATRL + KEYV V LH P A + R + G ++Q+PP SAV R+LR R
Sbjct: 65 DATRLAQVFLEGTKEYVAVLELHGPAP--ADLDRVVSEFEGELYQKPPRKSAVSRRLRTR 122
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
TIY +LE DR V+ I CE+GTY+R +C +GL LG GGHM LRR R+ ++
Sbjct: 123 TIYGLDVLEVK-DRK-VLLRIDCESGTYIRKLCHDIGLALGTGGHMGHLRRTRTDPF-DD 179
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
N+V +H DA + DEA LR V+ P E L R+ + + + +GA++
Sbjct: 180 SNLVNLHTFTDA-LAFAEEGDEALLREVVAPAERSLAHLPRVTIAPSAAEQVAHGAQVYA 238
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PG++ + I+ V T V LG A + G V R++RV++
Sbjct: 239 PGVINADEGIDRDALVACYTPDDAVVCLG----RLVGDADAERGEVVRLERVLV 288
>gi|212373385|dbj|BAE96950.2| Cbf5 [Thermoproteus tenax]
Length = 227
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 143/228 (62%), Gaps = 4/228 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAW+KRIL VE GHSGTLDP V+G L V I T+ + + A K YV VA+ H V D
Sbjct: 1 VAWLKRILNVEVAGHSGTLDPNVSGVLPVAIAEGTKALMALSRADKTYVAVAKFHGDV-D 59
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
AK+ L TGA++QRPPL SAVKRQLR+R +Y +LLE +D + + EAGTY
Sbjct: 60 EAKLREVLAYFTGAIYQRPPLRSAVKRQLRVRHVYSLELLE--LDGRYALLRMHVEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
R + +G +LGV +M+ELRRV G E + T+ D+ DA +++ NY D+ LR++
Sbjct: 118 ARKLIHDIGEVLGVSANMRELRRVGVGCFTEEEAF-TLQDIADAVYIWRNYGDDTVLRQI 176
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
+ P+E + ++ +KD V+A+C+GA L PG+++FE + G+ V
Sbjct: 177 VKPIEEIARGVAKIWIKDGAVDAVCHGAPLAAPGVVKFEEPFQRGDLV 224
>gi|292656614|ref|YP_003536511.1| tRNA pseudouridine synthase B [Haloferax volcanii DS2]
gi|448290617|ref|ZP_21481764.1| H/ACA RNA-protein complex component Cbf5p [Haloferax volcanii DS2]
gi|291370953|gb|ADE03180.1| tRNA pseudouridine synthase B [Haloferax volcanii DS2]
gi|445578229|gb|ELY32640.1| H/ACA RNA-protein complex component Cbf5p [Haloferax volcanii DS2]
Length = 289
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 149/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEHRSVGDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGSKEYVSVLELHG--PASADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
I++ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + +
Sbjct: 124 EIHDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATDPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D + T+HD+ DA + DE++LR V+ P E L+ + + ++ + GA +
Sbjct: 182 D-LATLHDLKDA-LAFAAEGDESWLRDVVSPAERALSHLPSVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADAARGDLVACFTDDGSAVCLG 268
>gi|335437482|ref|ZP_08560258.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus tiamatea
SARL4B]
gi|335438879|ref|ZP_08561610.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus tiamatea
SARL4B]
gi|334890150|gb|EGM28424.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus tiamatea
SARL4B]
gi|334895830|gb|EGM33993.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus tiamatea
SARL4B]
Length = 295
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 164/296 (55%), Gaps = 9/296 (3%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + + +G++NLDKP PS+H+V AW++ + V++ H+GTLDPKVTG L + +
Sbjct: 7 PEDRSPAELLSFGVLNLDKPPGPSAHQVAAWVRDLATVDRAAHAGTLDPKVTGCLPMLLG 66
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + + KEYV V LH+++ D A + + G ++Q+PP SAV R+LR R
Sbjct: 67 DATRMAQVFDDSRKEYVAVLELHERLADSAALEAIADEFEGEIYQKPPKKSAVVRRLRSR 126
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
I+ +LE + DR V+ I CE+GTY+R +C +GL LG G HM +LRR + E+
Sbjct: 127 EIHSLDVLEAE-DRR-VLLSIRCESGTYIRKLCHDMGLALGTGAHMGDLRRAATDPF-ED 183
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
++VTMHD +DA + D LR V+ P E L + + + ++ GA +
Sbjct: 184 SDLVTMHDFVDALAWWREDDDPQALREVVQPAERALVDLPSVTIAPSAAESVAEGAPVYA 243
Query: 331 PGLLRFENDIEVGEE--VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PG++ ++ ++ E V G AV LG T D G V ++RV++
Sbjct: 244 PGVIDADDGLDSDAEPLVACYIPNGAAVCLG----TLVGDPDSDEGTVVDLERVLV 295
>gi|448654558|ref|ZP_21681484.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula californiae
ATCC 33799]
gi|445766406|gb|EMA17533.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula californiae
ATCC 33799]
Length = 296
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 165/297 (55%), Gaps = 21/297 (7%)
Query: 97 VDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+D +R +G++NLDKP PS+H+V AWI+ ++ H GTLDPKVTG L V + A R+
Sbjct: 12 LDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLGDAARM 71
Query: 156 VKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYE 214
+ A KEYV V LHD+ P D+A + E ++Q+PP SAVKRQLR R I+
Sbjct: 72 AQVFDNAVKEYVTVLELHDQAPADIADIVTEFET---DIYQKPPRKSAVKRQLRSRRIHS 128
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
+LE DR L + + C +GTY+R +C +GL G G HM +LRR +G ++ ++
Sbjct: 129 LDILEQG-DRRL-LLRVRCASGTYIRKLCHDIGLAAGTGAHMGDLRRTATGTF-DDGSLS 185
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
TMHD++DA + DEA LR +I P E L+ R+ + + + GA + PG++
Sbjct: 186 TMHDLVDA-LAFAADGDEAQLREIIQPAERALSHLPRVTIAPSAAREVAEGAPVYAPGVI 244
Query: 335 RFENDIEVGE-------EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
EVG+ +VV +T G AV LG T D G+V + RV++
Sbjct: 245 E-TGPAEVGDATPEIDSQVVSVTPDGAAVCLG----TLVSDPDADSGLVVELDRVLV 296
>gi|48477739|ref|YP_023445.1| H/ACA RNA-protein complex component Cbf5p [Picrophilus torridus DSM
9790]
gi|62901314|sp|Q6L1A0.1|TRUB_PICTO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|48430387|gb|AAT43252.1| tRNA pseudouridine 55 synthase [Picrophilus torridus DSM 9790]
Length = 349
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 151/257 (58%), Gaps = 5/257 (1%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G I +DKP P+SH++ +WI+ I + GH GTLDP V+G L++ + +AT+L+
Sbjct: 6 GFIVVDKPKGPTSHQIDSWIRDITGEPRVGHIGTLDPGVSGVLVMALGKATKLIDIVHRE 65
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYV V R +DK D + + TG ++Q PP+ SAV R+LRIR IY +LLE +
Sbjct: 66 SKEYVSVLRTYDKY-DHDSIKSVFKEFTGKIYQIPPVRSAVSRELRIREIYNLELLE--M 122
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
D V+F + CE+GTY+RT+C +G +LG GG M ELRR R+G E+ T+ +V DA
Sbjct: 123 DEKFVLFKVCCESGTYIRTLCTDIGYVLGSGGQMAELRRTRTGPFDES-MCHTLQEVSDA 181
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L + +E + + +P++ + Y +++VK+T + I +G+ + G+ +
Sbjct: 182 FKL-KSMGNEKLFKNIFIPMDFIFIKYPKVIVKETALKNIAHGSDIYPAGIHAITGSPKK 240
Query: 343 GEEVVLMTTKGEAVALG 359
G+ V + T K E VA G
Sbjct: 241 GDVVAVYTEKNELVATG 257
>gi|448731529|ref|ZP_21713828.1| H/ACA RNA-protein complex component Cbf5p [Halococcus
saccharolyticus DSM 5350]
gi|445791857|gb|EMA42476.1| H/ACA RNA-protein complex component Cbf5p [Halococcus
saccharolyticus DSM 5350]
Length = 292
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 161/298 (54%), Gaps = 14/298 (4%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P +RP D + +G++NLDKP PS+H+V W++ ++ V++ H+GTLDPKVTG L + +
Sbjct: 5 PGERPPTDRLDFGVVNLDKPPGPSAHQVTGWVRDLVGVDRAAHAGTLDPKVTGCLPILLG 64
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATRL + KEYV V LH PD + L A G + Q+PP SAV R+LR+R
Sbjct: 65 DATRLAQVFLEGAKEYVAVLELHGPTPD--DLDAVLAAFEGPIQQKPPKKSAVTRRLRVR 122
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
TI+ L DV+ V+ I CE+GTYVR +C LGL LG G HM +LRRV + +
Sbjct: 123 TIH--ALDPLDVEERRVLLRIRCESGTYVRKLCHDLGLALGTGAHMGDLRRVGTTPFDDT 180
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D +V++HD+ DA ++ D L + P E L R+ V + + GA +
Sbjct: 181 D-LVSLHDLTDALAFAED-DDTELLAAAVQPAERALAHLPRVTVAPSAAREVAEGAPVYA 238
Query: 331 PGLLRFEN----DIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PG+L + + + V T G AV LG T A + G V ++RV++
Sbjct: 239 PGVLSIDGASGTNADESPLVACYTPNGAAVCLGRLVGT----ADAESGTVVDLERVLV 292
>gi|448634493|ref|ZP_21674891.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula vallismortis
ATCC 29715]
gi|445749466|gb|EMA00911.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula vallismortis
ATCC 29715]
Length = 296
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 165/307 (53%), Gaps = 25/307 (8%)
Query: 86 PNGYSPLKRPLVDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGN 144
PN +P D +R +G++NLDKP PS+H+V AWI+ ++ H GTLDPKVTG
Sbjct: 7 PNERAP------DSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGC 60
Query: 145 LIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAV 203
L V + A R+ + A KEYV V LHD+ P D+A + E V+Q+PP SAV
Sbjct: 61 LPVLLGDAARMAQVFDDAVKEYVTVLELHDQAPADIADIVAEFET---EVYQKPPRKSAV 117
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 263
KRQLR R I+ +LE R ++ + C +GTY+R +C +GL G G HM +LRR
Sbjct: 118 KRQLRARRIHSLDILEQGERR--LLLRVQCASGTYIRKLCHDIGLAAGTGAHMGDLRRTA 175
Query: 264 SGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAIC 323
+G ++ ++ TMHD++DA D DE+ LR +I P E L R+ + + +
Sbjct: 176 TGTF-DDASLSTMHDLVDALAFADE-GDESQLREIIQPAERALVHLPRVRIAPSAAREVA 233
Query: 324 YGAKLMIPGLL------RFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
GA + PG++ + E G +VV +T G AV LG T D G+V
Sbjct: 234 EGAPVYAPGVIGAGPAETGDATPEQGSQVVCVTPDGAAVCLG----TLVGDPDADDGLVV 289
Query: 378 RIKRVVM 384
I RV++
Sbjct: 290 EINRVLV 296
>gi|55379888|ref|YP_137738.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula marismortui
ATCC 43049]
gi|62901221|sp|Q5UXH1.1|TRUB_HALMA RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|55232613|gb|AAV48032.1| tRNA pseudouridine synthase B [Haloarcula marismortui ATCC 43049]
Length = 314
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 165/297 (55%), Gaps = 21/297 (7%)
Query: 97 VDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+D +R +G++NLDKP PS+H+V AWI+ ++ H GTLDPKVTG L V + A R+
Sbjct: 30 LDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLGDAARM 89
Query: 156 VKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYE 214
+ A KEYV V LHD+ P D+A + E ++Q+PP SAVKRQLR R I+
Sbjct: 90 AQVFDNAVKEYVTVLELHDQAPADIADIVAEFET---DIYQKPPRKSAVKRQLRSRRIHS 146
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
+LE DR L + + C +GTY+R +C +GL G G HM +LRR +G ++ ++
Sbjct: 147 LDILEQG-DRRL-LLRVRCASGTYIRKLCHDIGLAAGTGAHMGDLRRTATGTF-DDGSLS 203
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
TMHD++DA + DEA LR +I P E L+ R+ + + + GA + PG++
Sbjct: 204 TMHDLVDA-LAFAADGDEAQLREIIQPAERALSHLPRVTIAPSAAREVAEGAPVYAPGVI 262
Query: 335 RFENDIEVGE-------EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
EVG+ +VV +T G AV LG T D G+V + R+++
Sbjct: 263 E-TGPAEVGDATPEIDSQVVSVTPDGAAVCLG----TLVSDPDADSGLVVELDRMLV 314
>gi|212373377|dbj|BAE96946.2| Cbf5 [Caldivirga maquilingensis]
Length = 227
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 148/231 (64%), Gaps = 4/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAW+K++L + K GHSGTLDP V+G L + + +T++++ KEYV V LH V D
Sbjct: 1 VAWVKKLLNISKAGHSGTLDPGVSGVLPIALGDSTKVLQGISNVDKEYVGVMLLHSTV-D 59
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
+V TG ++QRPPL SAVKR++R++T+Y ++E+D R+ V+F E+GTY
Sbjct: 60 QERVKAVFREFTGKIYQRPPLKSAVKRRIRVKTVYSLDIMEFD-GRY-VLFKADVESGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C +G +LGVG M+ELRR R G E +N V ++ + +A L+ +Y DE+ LRR+
Sbjct: 118 IRKLCYDIGEVLGVGASMRELRRTRVGCFRE-ENTVNLNTLREAYSLWRDYGDESLLRRL 176
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I P+E ++ R+ ++D+ V+AI +GA L PG+ + E I G+ V LM
Sbjct: 177 IRPVEEMVIHLPRIYIRDSAVDAIAHGASLAAPGVAKVEEGIRSGQLVALM 227
>gi|212373375|dbj|BAE96945.2| Cbf5 [Sulfurisphaera ohwakuensis]
Length = 226
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 147/217 (67%), Gaps = 4/217 (1%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIK++ +V K GH GTLDPKVTG L + ++ AT+L+ +GKEYVC+ ++H ++
Sbjct: 3 WIKQMFKVSKAGHGGTLDPKVTGVLPIGLENATKLMSYISSSGKEYVCLMQVHCDF-NID 61
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
++ + + G ++Q+PP+ S+VKR+ R + IY+ ++L D D+ ++ IS + GTY+R
Sbjct: 62 ELKQLISKFIGIIYQKPPVRSSVKRRTRKKKIYDIEIL--DTDKRFILLRISSDPGTYMR 119
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
+C +G+ILG G HM+ELRR+RSGI E N+VT+ ++ +A +++ N +DE+ LR++++
Sbjct: 120 KLCHDIGVILGCGAHMRELRRIRSGIFTEK-NLVTLQEISEALYMWKNCKDESDLRKILL 178
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
P+E ++++ D V+AI YGA L PG++ ++
Sbjct: 179 PMEYATCGMPKILIDDNAVDAISYGAMLTAPGIVAYQ 215
>gi|212373336|dbj|BAE96926.2| Cbf5 [Aeropyrum camini SY1 = JCM 12091]
Length = 229
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 145/234 (61%), Gaps = 8/234 (3%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKR+L V + GH GTLDPKVTG L V ++R TR++ + + KEYVCV +LH V +
Sbjct: 1 VAWIKRMLGVSRAGHGGTLDPKVTGVLPVALERMTRIIGTVMHSSKEYVCVMQLHRPVEE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ L G ++Q+PPL S+VKR LR R I+ +LLEY L + CEAGTY
Sbjct: 61 -GRLREVLRLFEGEIYQKPPLRSSVKRALRTRRIFRIELLEYTGKYAL--LRVDCEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEA---YL 295
+R +C +GL+LGVG HM+ELRRVR+G E+ ++ D D + +R+E L
Sbjct: 118 MRKLCWDIGLVLGVGAHMRELRRVRTGPFSEDSGLMVRLD--DVAYAVIRWREEGKDDLL 175
Query: 296 RRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
RRV++P E + +++V+D+ V ++ +GA+L PG+ E +E G V LM
Sbjct: 176 RRVVIPGEYSVCHIPKVLVRDSAVESLTHGAQLAAPGVAAVEEGVEKGGMVALM 229
>gi|448732123|ref|ZP_21714405.1| H/ACA RNA-protein complex component Cbf5p [Halococcus salifodinae
DSM 8989]
gi|445805035|gb|EMA55262.1| H/ACA RNA-protein complex component Cbf5p [Halococcus salifodinae
DSM 8989]
Length = 292
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 161/300 (53%), Gaps = 18/300 (6%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P +RP D +G++NLDKP PS+H+V W++ ++ V++ H+GTLDPKVTG L + +
Sbjct: 5 PDERPPDDRREFGVVNLDKPPGPSAHQVTGWVRDLVGVDRAAHAGTLDPKVTGCLPILLG 64
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATRL + KEYV V LH PD + L A G + Q+PP SAV R+LR+R
Sbjct: 65 DATRLAQVFLEGAKEYVAVLELHGPAPD--DLEAVLAAFEGPIQQKPPKKSAVARRLRVR 122
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
TI+ L DV+ V+ I CE+GTYVR +C LGL LG G HM +LRR + +
Sbjct: 123 TIH--ALDPLDVEERRVLLRIRCESGTYVRKLCHDLGLALGTGAHMGDLRRAGTTPFDDT 180
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D +V++HD+ DA + D A L + P E LT R+ + + + GA +
Sbjct: 181 D-LVSLHDLTDA-LAFAEGDDIAPLADAVRPAERALTHLPRVTIAPSAAREVAEGAPVYA 238
Query: 331 PGLLRFENDIEVGEE----VVLMTTKGEAVALG--IAEMTTAVMATCDHGVVARIKRVVM 384
PG+L E+ + V T G AV LG + E A + G V ++RV++
Sbjct: 239 PGVLSIEDTSATNPDESPLVACYTPDGAAVCLGRLVGE------ADAERGTVVELERVLI 292
>gi|212373350|dbj|BAE96933.2| Cbf5 [Thermodiscus maritimus]
Length = 228
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 141/231 (61%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKR+ +++ GH GTLDPKVTG L V + R TR+V S + KEYVCV +LH V +
Sbjct: 1 VAWIKRMFNIKRAGHGGTLDPKVTGVLPVALQRMTRIVGSVIHSDKEYVCVMQLHAPVEE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ L G ++QRPPL S+VKR LR + +Y+ +LLEY L+ W EAGTY
Sbjct: 61 -ERLREVLNEFEGVIYQRPPLRSSVKRALRKKRVYKIELLEYTGKYALLHIW--SEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C +GL+LG G HM+ELRR+R+G E +V M D+ A Y + E LR+
Sbjct: 118 MRKICWDVGLVLGTGAHMRELRRIRTGPFTEERGLVRMQDIAYALIRYRDEGKEDLLRKY 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
++P E + ++VV+D+ V +I GA L +PG+ IE G+ V L+
Sbjct: 178 VLPGEYSVCHLPKVVVRDSAVESIVNGAMLAVPGIAMLHEGIEKGDTVALL 228
>gi|344210874|ref|YP_004795194.1| H/ACA RNA-protein complex component Cbf5p/tRNA pseudouridine
synthase B [Haloarcula hispanica ATCC 33960]
gi|343782229|gb|AEM56206.1| H/ACA RNA-protein complex component Cbf5p / tRNA pseudouridine
synthase B [Haloarcula hispanica ATCC 33960]
Length = 296
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 161/301 (53%), Gaps = 18/301 (5%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P +R L +G++NLDKP PS+H+V AWI+ ++ H GTLDPKVTG L V +
Sbjct: 7 PGERDLDSLRSFGVVNLDKPPGPSAHQVAAWIRNATDQDRVAHGGTLDPKVTGCLPVLLG 66
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
A R+ + A KEYV V LHD+ P D+A + E V+Q+PP SAVKRQLR
Sbjct: 67 DAARMAQVFDDAVKEYVTVLELHDQAPADIADIVAEFET---EVYQKPPRKSAVKRQLRA 123
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
R I+ +LE R ++ + C +GTY+R +C +GL G G HM +LRR +G +
Sbjct: 124 RRIHSLDILEQGERR--LLLRVRCASGTYIRKLCHDIGLAAGTGAHMGDLRRTATGTF-D 180
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
+ ++ TMHD++DA D DE LR ++ P E L R+ + + + GA +
Sbjct: 181 DASLSTMHDLVDALAFADE-GDEGKLREIVQPAERALVHLPRVTIAPSAAREVEDGAPVY 239
Query: 330 IPGLLRF------ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
PG++ + E G +VV +T G AV LG T D G+V + RV+
Sbjct: 240 APGVIETGPAEAGDATPETGSQVVCVTPDGAAVCLG----TLVGDPDADSGLVVELDRVL 295
Query: 384 M 384
+
Sbjct: 296 V 296
>gi|212373362|dbj|BAE96939.2| Cbf5 [Metallosphaera hakonensis]
Length = 226
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 14/222 (6%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH-----DK 175
W+K + + + GH GTLDPKVTG L + + +ATR++ +GKEY+C+ +H DK
Sbjct: 3 WVKTMFGLPRVGHGGTLDPKVTGVLPIGLGKATRVMNLITKSGKEYICLMEVHCEFSEDK 62
Query: 176 VPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEA 235
+ +V+K G ++Q+PP+ S+VKR++R R IY LLE R V+ IS E
Sbjct: 63 LREVSK------QFVGTIYQKPPVRSSVKRRVRKREIYSLDLLEISGRR--VLMRISSEP 114
Query: 236 GTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYL 295
GTY+R +C +G++LG G HM+ELRR +SGI E D +VT+ V +A +LY+N R+E L
Sbjct: 115 GTYMRKICHDMGILLGCGAHMRELRRTKSGIFKE-DTLVTLQQVSEALYLYNNCREEDEL 173
Query: 296 RRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
RR+++P+E +++V D TVN++ YG+ LM PG++ F+
Sbjct: 174 RRILIPMEYAFCGIPKIIVDDETVNSLAYGSPLMAPGIVAFQ 215
>gi|257387781|ref|YP_003177554.1| H/ACA RNA-protein complex component Cbf5p [Halomicrobium mukohataei
DSM 12286]
gi|257170088|gb|ACV47847.1| pseudouridylate synthase TruB domain protein [Halomicrobium
mukohataei DSM 12286]
Length = 299
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 152/282 (53%), Gaps = 20/282 (7%)
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR-----------VEKTGHSGTLD 138
SP R D + +G++NLDKP PS+H+V AW++ + + + H GTLD
Sbjct: 5 SPEHRSPADLLTFGVVNLDKPPGPSAHQVAAWVRDAVDDALDAAGDDRTLGRVAHGGTLD 64
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKV-PDVAKVARALEALTGAVFQRP 197
PKVTG L + + A R + A KEYV + LHD+ PD + E G ++Q+P
Sbjct: 65 PKVTGCLPILLGDAARAARVFDDAVKEYVTILELHDQAPPDFDSIVAEFE---GEIYQKP 121
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P SAVKR+LR RTI+ +LE R L + C +GTYVR +C +GL LG G HM
Sbjct: 122 PRKSAVKRRLRSRTIHALDVLERHDRRAL--LRVRCGSGTYVRKLCHDIGLALGTGAHMG 179
Query: 258 ELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
ELRR +G + D +VTM D++DA + + DE +L + P E L Y + + +
Sbjct: 180 ELRRTATGDFDDRD-LVTMEDLVDALAEWTDNDDETWLHETVAPAERALAGYPTVTIAPS 238
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+ +GA + PG++ E D E G +V +T G AV LG
Sbjct: 239 AAREVAHGAPVYAPGVI--ETDAEQGADVCCVTPDGAAVCLG 278
>gi|330040650|ref|XP_003239983.1| pseudouridylate synthase [Cryptomonas paramecium]
gi|327206909|gb|AEA39085.1| pseudouridylate synthase [Cryptomonas paramecium]
Length = 358
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 187/359 (52%), Gaps = 20/359 (5%)
Query: 64 QWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIK 123
+WP+LLKNY +N++ + + P R ++ Y++ I+N+DKP + + +E++ WI+
Sbjct: 5 KWPLLLKNYLSMNLQKNFFLSVKRQVFPFSRNVICYLKNSILNIDKPNHLNFYEIIKWIE 64
Query: 124 RILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVA 183
K L K G ++ ++ + +V Q K R V +
Sbjct: 65 NFFNTPKVKILRNLTAKFDGCCVIFLNNSVCIVDIQTKIEK------RASVNVFEFVYST 118
Query: 184 RALEALTGAVFQR---------PPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCE 234
++++ FQ+ + +K+++++ + + E+ + + F C
Sbjct: 119 KSIKKNLLYNFQKIRNIFVKNISNFLPGIKQKIKLDKFFSLSIKEFKKKKCISSF--ICN 176
Query: 235 AGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAY 294
+ T + + ++ I + E R++ SG L EN N+ HD++D++WLY + + + Y
Sbjct: 177 SHTCFKDLEIYFYSICSFKCRIHESRQIYSGYLSENQNLTNFHDLIDSEWLYSSKKIDFY 236
Query: 295 LRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGE 354
++++ MP+EV S++R+V+K ++VN+ICYGA L G++R E+ I+ +E++++T KGE
Sbjct: 237 IKKITMPMEVAAVSFRRVVIKFSSVNSICYGAALKTRGIIRTEDVIKKNQEIIIITLKGE 296
Query: 355 AVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDK 413
VALGI T + ++K+ +M ++TYP+ W +G +S KK L + G L K
Sbjct: 297 LVALGIYIHGVKFSET---KIYFKVKKTIMRKNTYPKLWKMGIFSSKKKLLFSSGFLFK 352
>gi|212373366|dbj|BAE96941.2| Cbf5 [Stygiolobus azoricus]
Length = 227
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 151/229 (65%), Gaps = 4/229 (1%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
W+K++ + K GH GTLDPKVTG L + ++ AT+L+ AGKEYVC+ ++H +
Sbjct: 3 WVKKMFNLNKVGHGGTLDPKVTGVLPIGMENATKLMSLISKAGKEYVCIMQVHCDY-KMD 61
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
++ + G ++QRPP+ S+VKR+ R R +Y +LE + LV+ I+ E GTY+R
Sbjct: 62 ELKEIVNQFIGEIYQRPPVRSSVKRRTRKRRVYSIDILE--TEGRLVLMKIASEPGTYMR 119
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
+C +G++LG G HM+ELRR RSGI E+ N+VT+H++ +A ++Y + +DE+ LRR+++
Sbjct: 120 KICHDIGILLGCGAHMRELRRTRSGIFTEDSNLVTLHEISEALYMYKHCKDESDLRRILL 179
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
P+E + ++V+ D VNAI YGA L PG++ F+N + GE V +M
Sbjct: 180 PMEFAVCGIPKVVIDDDAVNAITYGATLNAPGVVAFQN-FKKGENVAIM 227
>gi|448341353|ref|ZP_21530314.1| H/ACA RNA-protein complex component Cbf5p [Natrinema gari JCM
14663]
gi|445628035|gb|ELY81346.1| H/ACA RNA-protein complex component Cbf5p [Natrinema gari JCM
14663]
Length = 302
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 168/308 (54%), Gaps = 26/308 (8%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH++ W++ + +++ H+GTLDP
Sbjct: 7 PAARSPAELLTFGVVNLDKPPGPSSHQISGWLRDAVVETLAERGVESTIDRAAHAGTLDP 66
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPP 198
KVTG L V + ATRL + GKEYV V H VP D V E G ++Q+PP
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVPGDAESVVAEFE---GPIYQKPP 123
Query: 199 LISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQE 258
SAV R+LR+R +Y+ ++LE + DR L + I CE+GTYVR +C LGL LG G HM
Sbjct: 124 RKSAVSRRLRVRELYDLEVLEVE-DRRL-LLRIRCESGTYVRKLCHDLGLALGTGAHMGH 181
Query: 259 LRRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + ++ + + HD +DA WL D+ D L ++ P E +L R+V+ +
Sbjct: 182 LRRTATEPF-DDRTLHSAHDFLDALGFWLEDD--DPEPLYDIVDPAERILEGIPRVVIAE 238
Query: 317 TTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVV 376
+ GA + PG+L ++ I+ G V T G AV LG E AV A D GVV
Sbjct: 239 NAAREVANGAPVYAPGVLEADDGIDHGSLVACYTPDGAAVCLG--ERVGAVDA--DSGVV 294
Query: 377 ARIKRVVM 384
++RV++
Sbjct: 295 VSLERVLV 302
>gi|257053389|ref|YP_003131222.1| H/ACA RNA-protein complex component Cbf5p [Halorhabdus utahensis
DSM 12940]
gi|256692152|gb|ACV12489.1| pseudouridylate synthase TruB domain protein [Halorhabdus utahensis
DSM 12940]
Length = 295
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 164/296 (55%), Gaps = 9/296 (3%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + + +G++NLDKP PS+H+V AW++ + VE+ H+GTLDPKVTG L + +
Sbjct: 7 PEDRSPAELLSFGVLNLDKPPGPSAHQVAAWVRDLATVERAAHAGTLDPKVTGCLPMLLG 66
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + + KEYV V LH+++ D + + + G ++Q+PP SAV R+LR R
Sbjct: 67 DATRMAQVFDDSDKEYVAVLELHERLADPSTLEAVADEFEGEIYQKPPKKSAVVRRLRSR 126
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
I+ +LE + R L+ I CE+GTY+R +C +GL LG G HM +LRR + +
Sbjct: 127 EIHRLDVLEAEDRRALLS--IRCESGTYIRKLCHDMGLALGTGAHMGDLRRAATDPFDDA 184
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D +VTMHD +DA + D LR V+ P E L + + + ++ GA +
Sbjct: 185 D-LVTMHDFVDALAWWREDDDPDPLREVVQPAERALVDLPSVTIAPSAAESVAEGAPIYA 243
Query: 331 PGLLRFENDIEVGEE--VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PG++ ++D++ E V G AV LG T A D G V ++RV++
Sbjct: 244 PGVIDADDDLDPAAEPLVACYIPNGAAVCLG----TLAGDPDADEGTVVELERVLV 295
>gi|448323124|ref|ZP_21512588.1| H/ACA RNA-protein complex component Cbf5p [Natronococcus
amylolyticus DSM 10524]
gi|445600310|gb|ELY54323.1| H/ACA RNA-protein complex component Cbf5p [Natronococcus
amylolyticus DSM 10524]
Length = 300
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 156/282 (55%), Gaps = 22/282 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR----------VEKTGHSGTLDPK 140
P +R + +R+G++NLDKP PSSH+V W++ + +++ H+GTLDPK
Sbjct: 7 PEERSPAELLRFGVVNLDKPPGPSSHQVSGWLRDEVADALTKHGAEPIDQAAHAGTLDPK 66
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPL 199
VTG L V + ATRL ++ KEYV V H VP D +A E G ++Q+PP
Sbjct: 67 VTGCLPVMLGEATRLAQTFLEGEKEYVAVLECHGSVPGDAESIASEFE---GPIYQKPPR 123
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R IY+ +LE + DR L+V I CE+GTYVR +C LGL LG GGHM L
Sbjct: 124 KSAVSRRLRVREIYDLDVLEVE-DRRLLV-RIGCESGTYVRKLCHDLGLALGTGGHMGHL 181
Query: 260 RRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
RR + ++ + T + DA WL D+ D L V+ P E +L R+ + D+
Sbjct: 182 RRTATTPF-DDSTLHTAQEFYDALAFWLEDD--DPEPLYDVVEPAERILEHIPRVTIADS 238
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+ GA + PG+L +D E G V T+ G AV LG
Sbjct: 239 AAEQVATGAPVYAPGVLE-ADDAERGSLVACFTSDGAAVCLG 279
>gi|212373387|dbj|BAE96951.2| Cbf5 [Vulcanisaeta distributa]
Length = 227
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 148/230 (64%), Gaps = 4/230 (1%)
Query: 120 AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDV 179
AW+K++L +++ GHSGTLDP+V+G L + + +T+ + + KEY+ V +LH V D
Sbjct: 2 AWVKKMLNLDRAGHSGTLDPRVSGVLPIALGESTKAMPAINTLDKEYIMVMKLHGDVDD- 60
Query: 180 AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
K+ L TGA++QRPPL SAVKRQLR++ +YE +LLE D V+ ++ E+GTY
Sbjct: 61 EKLRAVLREFTGAIYQRPPLRSAVKRQLRVKHVYELELLERD--GKYVLIRMNVESGTYA 118
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
R + +G +LG+G +M+ELRR R G E + VT+ D+ DA LY +Y E LR +
Sbjct: 119 RKLAYDIGEVLGIGANMRELRRTRVGCFTEKEA-VTLQDLKDAYTLYKDYGVEDLLRTYV 177
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
P+E ++ ++ ++D+ V+AIC+GA L +PG+++ N+I G V +M
Sbjct: 178 KPVEYMVRHLPKVWIRDSAVDAICHGAALAVPGIVKLTNNIGKGSLVAIM 227
>gi|449066823|ref|YP_007433905.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus
acidocaldarius N8]
gi|449069095|ref|YP_007436176.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus
acidocaldarius Ron12/I]
gi|449035331|gb|AGE70757.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus
acidocaldarius N8]
gi|449037603|gb|AGE73028.1| H/ACA RNA-protein complex component Cbf5p [Sulfolobus
acidocaldarius Ron12/I]
Length = 235
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 153/232 (65%), Gaps = 4/232 (1%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
+GKEY+C+ ++H V D ++ + G ++Q+PP+ S+VKR++R R IY +L D
Sbjct: 7 SGKEYICLLQMHCNV-DQKELKEIISQFVGEIYQKPPVRSSVKRRIRKRRIYAIDIL--D 63
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
+ L++ + +AGTY+R +C +G+I G G HM+ELRR+RSGI E NMVT+ +V +
Sbjct: 64 MQDKLILLRVQSDAGTYMRKLCHDVGVIAGCGSHMRELRRIRSGIFTEKTNMVTLQEVSE 123
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
+ +LY N +DE+ LRR+++P+E + +++V DT VNAI YGAKL +PG+L ++N
Sbjct: 124 SLYLYRNCKDESELRRILLPMEYGVCGIPKVIVSDTAVNAITYGAKLNLPGILAYQN-FR 182
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
++V ++T KGE VA+G + + + + + G V R KR+ M+RD YP+ W
Sbjct: 183 KNQDVAVLTLKGELVAIGESIVESKQLESGKKGEVIRPKRIFMERDIYPKSW 234
>gi|15920607|ref|NP_376276.1| tRNA pseudouridine synthase B [Sulfolobus tokodaii str. 7]
Length = 237
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 152/232 (65%), Gaps = 5/232 (2%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
+GKEYVC+ ++H ++ ++ + + G ++Q+PP+ S+VKR+ R + IY+ ++L D
Sbjct: 7 SGKEYVCLMQVHCDF-NIDELKQIISKFIGIIYQKPPVRSSVKRRTRKKKIYDIEIL--D 63
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
D+ ++ IS + GTY+R +C +G+ILG G HM+ELRR+RSGI E N+VT+ ++ +
Sbjct: 64 TDKRFILLRISSDPGTYMRKLCHDIGVILGCGAHMRELRRIRSGIFTEK-NLVTLQEISE 122
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
A +++ N +DE+ LR++++P+E ++++ D V+AI YGA L PG++ ++
Sbjct: 123 ALYMWKNCKDESDLRKILLPMEYATCGMPKILIDDNAVDAISYGAMLTAPGIVAYQR-FR 181
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
V + V ++T KGE VA+G A++ + + G+V + KRV+M RD YPR W
Sbjct: 182 VKDTVAILTLKGELVAIGEADVDSQKLVDMKKGIVVKPKRVLMPRDIYPRSW 233
>gi|389860677|ref|YP_006362917.1| pseudouridylate synthase TruB domain-containing protein
[Thermogladius cellulolyticus 1633]
gi|388525581|gb|AFK50779.1| pseudouridylate synthase TruB domain protein [Thermogladius
cellulolyticus 1633]
Length = 264
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 160/255 (62%), Gaps = 3/255 (1%)
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPP 198
PKVTG L V ++ AT+++ + KEYV V +LHD V + + RA+E G ++QRPP
Sbjct: 6 PKVTGVLPVGLENATKVIGNVIHTVKEYVMVIQLHDVVNE-ESLRRAVEYFKGEIYQRPP 64
Query: 199 LISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQE 258
L S+VKR LR R +YE +LLEY D+ +V +S + GTY+R + +GLILGVG HM+E
Sbjct: 65 LRSSVKRTLRKRNVYEIELLEYR-DKFALVRVLS-DPGTYMRKIAHDIGLILGVGAHMRE 122
Query: 259 LRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTT 318
LRR R+G E++ + TM +VM+A L+ DE LRRV+ P+EV + +++V DT
Sbjct: 123 LRRTRTGPFKEDETLSTMQEVMEAVTLWREKGDERLLRRVVQPVEVSVVHLPKVMVLDTA 182
Query: 319 VNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVAR 378
V+AI +GA L PG+ +D+ G V + T KGE V+LG+++ A + + G+V +
Sbjct: 183 VDAIAHGANLAAPGVASVTSDVRRGFAVAVFTLKGELVSLGVSQHDAAEIKNMNKGIVVK 242
Query: 379 IKRVVMDRDTYPRKW 393
KRV M YP+ W
Sbjct: 243 TKRVYMQPGIYPQAW 257
>gi|313125693|ref|YP_004035963.1| tRNA pseudouridine synthase b [Halogeometricum borinquense DSM
11551]
gi|448285532|ref|ZP_21476774.1| H/ACA RNA-protein complex component Cbf5p [Halogeometricum
borinquense DSM 11551]
gi|312292058|gb|ADQ66518.1| tRNA pseudouridine synthase B [Halogeometricum borinquense DSM
11551]
gi|445576540|gb|ELY30993.1| H/ACA RNA-protein complex component Cbf5p [Halogeometricum
borinquense DSM 11551]
Length = 290
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 151/270 (55%), Gaps = 9/270 (3%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R L D + +G++NLDKP PS+H+V AW++ + VE+ H+GTLDPKVTG L + +
Sbjct: 8 PDDRSLDDLLSFGVVNLDKPPGPSAHQVAAWVRDMAGVERAAHAGTLDPKVTGCLPMLLG 67
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
ATR+ + KEYV V LH P D+ V E G V+Q+PP SAV R+LR
Sbjct: 68 DATRMAQVFLEGSKEYVSVLELHKPAPSDLESVVAEFE---GDVYQKPPRKSAVSRRLRS 124
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
R +Y+ LLE + DR + I CE+GTY+R +C +GL G G HM LRR + +
Sbjct: 125 REVYDLDLLEVE-DRQ-ALLRIRCESGTYIRKLCHDIGLAAGTGAHMGHLRRTATDPFDD 182
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
D +VT++D+ DA + DE+ LR V+ P E L+ + + + + GA +
Sbjct: 183 TD-LVTLYDLSDA-LAFAEQGDESVLRDVVAPAERALSHLPHVTIAYSAAEQVAEGAPVY 240
Query: 330 IPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ +D E G V +T G AV LG
Sbjct: 241 APGVSE-ADDAERGSLVACVTPDGAAVCLG 269
>gi|70922453|ref|XP_734390.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56507087|emb|CAH83896.1| hypothetical protein PC300741.00.0 [Plasmodium chabaudi chabaudi]
Length = 122
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 101/118 (85%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
++ I+P+ +ID S WP+LLKNYD+LN+R+ H+TPLP G SP R L +Y++YGIINL
Sbjct: 5 EYKIEPEKKEATIDASNWPLLLKNYDKLNIRSSHFTPLPMGNSPYSRNLKEYLKYGIINL 64
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
DKP+NPSSHEVV+WI++ILR EKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GK+
Sbjct: 65 DKPSNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKD 122
>gi|448311944|ref|ZP_21501697.1| H/ACA RNA-protein complex component Cbf5p [Natronolimnobius
innermongolicus JCM 12255]
gi|445603565|gb|ELY57527.1| H/ACA RNA-protein complex component Cbf5p [Natronolimnobius
innermongolicus JCM 12255]
Length = 306
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 161/305 (52%), Gaps = 20/305 (6%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P +RP + + +G++NLDKP PSSH+V W++ + +E+ H+GTLDP
Sbjct: 11 PAERPPEELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLTAQSTDATIEQAAHAGTLDP 70
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + KEYV V H VP A + G ++Q+PP
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGFKEYVAVLECHAPVP--ADAESVVADFEGPIYQKPPR 128
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R IY+ +LE DR L++ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 129 KSAVSRRLRVREIYDLDVLEAS-DRQLLL-RIRCESGTYVRKLCHDLGLALGTGGHMGHL 186
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + + D + + ++ +DA + D LR V+ P E +L + + +
Sbjct: 187 RRTATSPFDDRD-LYSAYEFLDALAFWREDDDADLLREVVDPAERILEDLPSVTIARSAA 245
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARI 379
+ GA + PG+L +D+ G+ V T AV LG E A A GVV +
Sbjct: 246 AEVAEGAPVYAPGVLDVADDVAEGQLVACYTPNDAAVCLG--EFVGAADAA--EGVVVDL 301
Query: 380 KRVVM 384
+RV++
Sbjct: 302 ERVLV 306
>gi|448329398|ref|ZP_21518698.1| H/ACA RNA-protein complex component Cbf5p [Natrinema versiforme JCM
10478]
gi|445614137|gb|ELY67818.1| H/ACA RNA-protein complex component Cbf5p [Natrinema versiforme JCM
10478]
Length = 302
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 166/307 (54%), Gaps = 24/307 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 7 PADRSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVVDTLAERGVESTIDRAAHAGTLDP 66
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + GKEYV V H VP A + G ++Q+PP
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVP--ADAESVVAEFEGPIYQKPPR 124
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R +Y+ ++LE + R ++ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 125 KSAVSRRLRVRELYDLEVLETEERR--LLLRIRCESGTYVRKLCHDLGLALGTGGHMGHL 182
Query: 260 RRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
RR + ++ + + D +DA WL D D L V+ P E +L +V+ +
Sbjct: 183 RRTATDPF-DDSTLHSAQDFLDALGFWLEDG--DPGPLYDVVDPAERILEGIPSVVIAEN 239
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
+ +GA + PG+L ++ I+ G V T G AV LG E+ +V A + GVV
Sbjct: 240 AAREVAHGAPVYAPGVLEADDGIDHGALVACYTPNGAAVCLG--ELAGSVDA--ESGVVV 295
Query: 378 RIKRVVM 384
++RV++
Sbjct: 296 DLERVLV 302
>gi|448679123|ref|ZP_21689960.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula argentinensis
DSM 12282]
gi|445771221|gb|EMA22278.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula argentinensis
DSM 12282]
Length = 296
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 154/271 (56%), Gaps = 15/271 (5%)
Query: 97 VDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+D +R +G++NLDKP PS+H+V AWI+ ++ H GTLDPKVTG L V + A R+
Sbjct: 12 LDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLGDAARM 71
Query: 156 VKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYE 214
+ A KEYV V LHD+ P D+A + E ++Q+PP SAVKRQLR R I+
Sbjct: 72 AQVFDSAVKEYVTVLELHDQAPADIADIVAEFET---DIYQKPPRKSAVKRQLRSRRIHS 128
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
+LE R ++ + C +GTY+R +C +GL G G HM +LRR +G ++ ++
Sbjct: 129 LDILEQGERR--LLLRVQCASGTYIRKLCHDIGLAAGTGAHMGDLRRTATGTF-DDASLS 185
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
TMH+++DA ++ DEA LR +I P E L R+ + + + GA + PG++
Sbjct: 186 TMHELVDALAFAED-GDEAQLREIIQPAERALVHLPRVTIAPSAAREVAEGAPVYAPGVI 244
Query: 335 RF------ENDIEVGEEVVLMTTKGEAVALG 359
+ E+G ++V +T G AV LG
Sbjct: 245 EAGPAEAGDAVPEIGSQIVSVTPDGAAVCLG 275
>gi|397773801|ref|YP_006541347.1| rRNA pseudouridine synthase [Natrinema sp. J7-2]
gi|397682894|gb|AFO57271.1| rRNA pseudouridine synthase [Natrinema sp. J7-2]
Length = 302
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 166/307 (54%), Gaps = 24/307 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH++ W++ + +++ H+GTLDP
Sbjct: 7 PAARSPAELLTFGVVNLDKPPGPSSHQISGWLRDAVVETLAERGVESTIDRAAHAGTLDP 66
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + GKEYV V H VP A + G ++Q+PP
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVP--ADAESVVAEFEGPIYQKPPR 124
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R +Y+ ++LE + DR L + I CE+GTYVR +C LGL LG G HM L
Sbjct: 125 KSAVSRRLRVRELYDLEVLEVE-DRRL-LLRIRCESGTYVRKLCHDLGLALGTGAHMGHL 182
Query: 260 RRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
RR + ++ + + HD +DA WL D+ D L ++ P E +L +V+ +
Sbjct: 183 RRTATEPF-DDRTLYSAHDFLDALGFWLEDD--DPEPLYDIVDPAERILEGIPSVVIAEN 239
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
+ GA + PG+L ++ I+ G V T G AV LG E AV A D GVV
Sbjct: 240 AAREVANGAPVYAPGVLEADDGIDHGSLVACYTPDGAAVCLG--ERVGAVDA--DSGVVV 295
Query: 378 RIKRVVM 384
++RV++
Sbjct: 296 ALERVLV 302
>gi|448302902|ref|ZP_21492852.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum
sulfidifaciens JCM 14089]
gi|445593909|gb|ELY48076.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum
sulfidifaciens JCM 14089]
Length = 306
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 162/307 (52%), Gaps = 24/307 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P +R D + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 11 PDERTPADLLTFGVVNLDKPPGPSSHQVSGWLRDAVVETLSERGADASIDQAAHAGTLDP 70
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + KEYV V H VP A + G ++Q+PP
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGPKEYVAVLECHAPVP--ADAESVIAEFEGPIYQKPPR 128
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R +Y+ ++LE D DR ++ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 129 KSAVSRRLRVREMYDLEVLETD-DRQ-ILLRIRCESGTYVRKLCHDLGLALGTGGHMGHL 186
Query: 260 RRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
RR + + D + + + +DA WL D+ D L V+ P E +L + + +
Sbjct: 187 RRTATTPFDDTD-LHSASEFLDALAFWLEDD--DPELLYEVVDPAERILEDIPSVTIAEN 243
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
+ GA + PG+L ++D+ G+ + T G AV LG T D G V
Sbjct: 244 AAREVANGAPVYAPGVLETDDDVATGDLLACYTPNGAAVCLG----TLVGDPEADQGTVV 299
Query: 378 RIKRVVM 384
++RV++
Sbjct: 300 SLERVLV 306
>gi|433590230|ref|YP_007279726.1| rRNA pseudouridine synthase, putative [Natrinema pellirubrum DSM
15624]
gi|448332364|ref|ZP_21521608.1| H/ACA RNA-protein complex component Cbf5p [Natrinema pellirubrum
DSM 15624]
gi|433305010|gb|AGB30822.1| rRNA pseudouridine synthase, putative [Natrinema pellirubrum DSM
15624]
gi|445627468|gb|ELY80792.1| H/ACA RNA-protein complex component Cbf5p [Natrinema pellirubrum
DSM 15624]
Length = 301
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 163/304 (53%), Gaps = 19/304 (6%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL----------RVEKTGHSGTLDPK 140
P +R D + +G++NLDKP PSSH+V W++ + +++ H+GTLDPK
Sbjct: 7 PAERSPADLLTFGVVNLDKPPGPSSHQVSGWLRDAVAETLADQGAATIDRAAHAGTLDPK 66
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLI 200
VTG L V + ATRL + KEY V H VP A + G ++Q+PP
Sbjct: 67 VTGCLPVMLGDATRLAQVFLEGAKEYTAVLECHAPVP--ADAESVVAEFEGPIYQKPPRK 124
Query: 201 SAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 260
SAV R+LR+R IY+ ++LE + DR L+ I CE+GTYVR +C LGL LG GGHM LR
Sbjct: 125 SAVARRLRVREIYDLEVLEAE-DRRLL-LRIRCESGTYVRKLCHDLGLALGTGGHMGHLR 182
Query: 261 RVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVN 320
R + ++ + + HD +DA + D L V+ P E +L +VV ++
Sbjct: 183 RTATDPF-DDRTLHSAHDFLDALAFWVEDDDPEPLFDVVDPAERILEGIPSVVVAESAAR 241
Query: 321 AICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIK 380
I GA + PG++ ++ IE G V T AV LG E+ + A D GVV ++
Sbjct: 242 EIAQGAPVYGPGVIEADDGIEQGSLVACYTPDDAAVCLG--ELVASPDA--DEGVVVDLE 297
Query: 381 RVVM 384
RV++
Sbjct: 298 RVLV 301
>gi|448641087|ref|ZP_21677874.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula sinaiiensis
ATCC 33800]
gi|445761612|gb|EMA12860.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula sinaiiensis
ATCC 33800]
Length = 296
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 164/297 (55%), Gaps = 21/297 (7%)
Query: 97 VDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+D +R +G++NLDKP PS+H+V AWI+ ++ H GTLDPKVTG L V + A R+
Sbjct: 12 LDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLGDAARM 71
Query: 156 VKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYE 214
+ A KEYV V LH + P D+A + E ++Q+PP SAVKRQLR R I+
Sbjct: 72 AQVFDNAVKEYVTVLELHGQAPADIADIVAEFET---DIYQKPPRKSAVKRQLRSRRIHS 128
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
+LE DR L + + C +GTY+R +C +GL G G HM +LRR +G ++ ++
Sbjct: 129 LDILEQG-DRRL-LLRVRCASGTYIRKLCHDIGLAAGTGAHMGDLRRTATGTF-DDGSLS 185
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
TMHD++DA + DEA LR +I P E L+ R+ + + + GA + PG++
Sbjct: 186 TMHDLVDA-LAFAADGDEAQLREIIQPAERALSHLPRVTIAPSAAREVAEGAPVYAPGVI 244
Query: 335 RFENDIEVGE-------EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
EVG+ +VV +T G AV LG T D G+V + R+++
Sbjct: 245 E-TGPAEVGDATPEIDSQVVSVTPDGAAVCLG----TLVSDPDADSGLVVELDRMLV 296
>gi|429190181|ref|YP_007175859.1| rRNA pseudouridine synthase [Natronobacterium gregoryi SP2]
gi|448326093|ref|ZP_21515463.1| H/ACA RNA-protein complex component Cbf5p [Natronobacterium
gregoryi SP2]
gi|429134399|gb|AFZ71410.1| rRNA pseudouridine synthase, putative [Natronobacterium gregoryi
SP2]
gi|445613227|gb|ELY66935.1| H/ACA RNA-protein complex component Cbf5p [Natronobacterium
gregoryi SP2]
Length = 304
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 164/296 (55%), Gaps = 20/296 (6%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDPKVTGNLIVC 148
+ +G++NLDKP PSSH+V W++ + +++ H+GTLDPKVTG L V
Sbjct: 18 LPFGVVNLDKPPGPSSHQVSGWLRDAVDETLDDRGVDATIDRAAHAGTLDPKVTGCLPVM 77
Query: 149 IDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLR 208
ATRL + KEYV V H VP A + A G ++Q+PP SAV R+LR
Sbjct: 78 FGEATRLAQVFLEGPKEYVAVLECHSSVP--ADAESIVAAFEGPIYQKPPRKSAVSRRLR 135
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
+R +Y+ ++LE DR L + I CE+GTYVR +C LGL LG GGHM +LRR +
Sbjct: 136 VREMYDLEVLEA-ADRRL-LLRIRCESGTYVRKLCHDLGLALGTGGHMGDLRRTGTSPF- 192
Query: 269 ENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
++ ++ ++ + +DA + D L V+ P E +L +V+ + + + GA +
Sbjct: 193 DDSSLHSVQEFLDALAFWVEDDDPEPLYEVVEPAERILEEIPGVVIAENAAHEVAEGAPV 252
Query: 329 MIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PG+L ++D G+ V T G AVALG E+ +V A + GVV ++RV++
Sbjct: 253 YAPGVLTVDDDASRGDLVACYTPDGSAVALG--ELVGSVDA--ESGVVVDLERVLV 304
>gi|212373334|dbj|BAE96925.2| Cbf5 [Acidilobus aceticus]
Length = 228
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 145/230 (63%), Gaps = 3/230 (1%)
Query: 120 AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDV 179
AW+KR+L V++ GH GTLDPKVTG L V +D T+++ S + K YVCV +LH V +
Sbjct: 2 AWVKRLLGVKRAGHGGTLDPKVTGVLPVALDHMTKIMGSVVHSRKAYVCVMQLHGDVSE- 60
Query: 180 AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
K+ E TG ++QRPP+ S VKR LR R I+ ++LE V L + + + GTY+
Sbjct: 61 KKLREVAEEFTGTIYQRPPVRSNVKRALRTRRIFSLEVLE--VRGRLALLRVESDPGTYM 118
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
R +C +GL+LGVG HM+ELRR+++G E+ N+VT+ ++ +A + + + YLRR +
Sbjct: 119 RKLCWDMGLVLGVGAHMRELRRIKTGPFDEDHNLVTLQELSEAVYRFREEGKDDYLRRAV 178
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+P EV+ ++V++D+ V ++ GA L +PG+ D++ G V ++
Sbjct: 179 LPGEVITCELPKVVLRDSAVESVVNGAPLAVPGISLLTPDVKAGGRVAML 228
>gi|300709166|ref|XP_002996750.1| hypothetical protein NCER_100126 [Nosema ceranae BRL01]
gi|239606073|gb|EEQ83079.1| hypothetical protein NCER_100126 [Nosema ceranae BRL01]
Length = 171
Score = 179 bits (455), Expect = 3e-42, Method: Composition-based stats.
Identities = 86/152 (56%), Positives = 110/152 (72%), Gaps = 1/152 (0%)
Query: 68 LLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR 127
LLKN D + ++ ++TP G+ P RPL Y++YGII++DK +NPSSHEVV WIK IL
Sbjct: 11 LLKNVDSMITKSTNFTPFGCGHLPYNRPLDQYLKYGIIHIDKSSNPSSHEVVTWIKNILE 70
Query: 128 VEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALE 187
+KTGH GTLDPKV+G L +C++RATRL KSQQ GKEYVCV DK P +A+E
Sbjct: 71 CDKTGHCGTLDPKVSGVLTICLNRATRLTKSQQTLGKEYVCVIEFEDK-PSKTSFYKAVE 129
Query: 188 ALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
LTG ++QRPPL+ AVKR LR+R IY+ +LE
Sbjct: 130 KLTGVLYQRPPLMCAVKRDLRLRNIYKIDVLE 161
>gi|448345620|ref|ZP_21534509.1| H/ACA RNA-protein complex component Cbf5p [Natrinema altunense JCM
12890]
gi|445633553|gb|ELY86740.1| H/ACA RNA-protein complex component Cbf5p [Natrinema altunense JCM
12890]
Length = 302
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 163/305 (53%), Gaps = 20/305 (6%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 7 PAARSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVVETLAERGVESTIDRAAHAGTLDP 66
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + GKEYV V H VP A + G ++Q+PP
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVP--ADAESVVAEFEGPIYQKPPR 124
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R +Y+ ++LE + DR L + I CE+GTYVR +C LGL LG G HM L
Sbjct: 125 KSAVSRRLRVRELYDLEVLEVE-DRRL-LLRIRCESGTYVRKLCHDLGLALGTGAHMGHL 182
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + ++ + + HD +DA + D L V+ P E +L +V+ +
Sbjct: 183 RRTATDPF-DDRTLHSAHDFLDALGFWVEDDDPEPLYDVVDPAERILEGIPSVVIAENAA 241
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARI 379
+ GA + PG+L ++ I+ G V T G AV LG E AV A D GVV +
Sbjct: 242 REVANGAPVYAPGVLEADDGIDHGSLVACYTPDGAAVCLG--ERVGAVDA--DSGVVVAL 297
Query: 380 KRVVM 384
+RV++
Sbjct: 298 ERVLV 302
>gi|212373383|dbj|BAE96949.2| Cbf5 [Pyrobaculum neutrophilum V24Sta]
Length = 227
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 141/227 (62%), Gaps = 4/227 (1%)
Query: 120 AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDV 179
AW+K+IL VE+ GH+GTLDPKV+G L + + T+++ + + K YV VA+ H V D
Sbjct: 2 AWVKKILGVERAGHAGTLDPKVSGVLPIAVAEGTKVLLALSRSDKVYVAVAKFHGDV-DE 60
Query: 180 AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
K+ L G ++QRPPL SAVKRQLR R +Y +LLE +D V + EAGTY
Sbjct: 61 GKLRAVLGEFQGIIYQRPPLRSAVKRQLRTRQVYSIELLE--LDGRYAVIKMHVEAGTYA 118
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
R + +G +LGVG +M+ELRRV E + VT+ DV DA +++ Y D+ YLRRV+
Sbjct: 119 RKLIHDIGEVLGVGANMRELRRVAVSCYTEEET-VTLQDVADAYYIWRKYGDDTYLRRVL 177
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
+P+E + ++ V+D+ V+A+C GA L PG+ +FE GE V
Sbjct: 178 LPIEEIARHLPKIWVRDSAVDALCNGAPLAAPGVAKFEAPFSRGELV 224
>gi|448392227|ref|ZP_21567097.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena salina JCM
13891]
gi|445664660|gb|ELZ17366.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena salina JCM
13891]
Length = 304
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 149/280 (53%), Gaps = 16/280 (5%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH+V W++ + +E+ H+GTLDP
Sbjct: 11 PDDRTPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADRAPDATIEQAAHAGTLDP 70
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + KEYV V H VP A + G ++Q+PP
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGSKEYVAVLECHAPVP--ADAESVVAEFEGPIYQKPPR 128
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R IY+ ++LE D R LV I CE+GTYVR +C LGL LG GGHM L
Sbjct: 129 KSAVARRLRVREIYDLEVLETDERRLLV--RIRCESGTYVRKLCHDLGLALGTGGHMGHL 186
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + + D + + HD +DA + D + V+ P E +L +V+ +
Sbjct: 187 RRTATSPFDDRD-LHSAHDFLDALAYWREDDDPEAVFDVVDPAERILEELPGVVIAPSAA 245
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+ GA + PG++ ++D + G+ V T G AV LG
Sbjct: 246 REVANGATVYDPGVIETDDDAQAGDLVACYTPNGAAVCLG 285
>gi|256252630|dbj|BAH97712.1| Cbf5 [Desulfurococcus amylolyticus Z-533]
Length = 228
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 152/231 (65%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAW+K++ +EK GH GTLDPKVTG L + + +T+++ + + KEYV V +LH +
Sbjct: 1 VAWVKKMFNLEKAGHGGTLDPKVTGVLPIGLANSTKVIGNVIHSVKEYVMVIQLHGDARE 60
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
+ V +E G ++Q+PPL S+VKR +R+R IYE +LLE DR ++V +S + GTY
Sbjct: 61 -SSVKMVVEYFKGDIYQKPPLRSSVKRSIRVRRIYEIELLEIR-DRFILVRVLS-DPGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R + +GL+LG G HM+ELRR R+G E++ +V + D+ +A L+ + DE Y+RR+
Sbjct: 118 MRKLAHDIGLMLGTGAHMRELRRTRTGPYREDETLVRLQDISEALALWRSSGDERYIRRI 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I+P+E + ++++ DT V+AI +GA L +PG+ R +++E + V ++
Sbjct: 178 ILPVETSIAHLPKIMILDTAVDAIAHGANLAVPGIARLTSNVERNKTVAIL 228
>gi|76803088|ref|YP_331183.1| H/ACA RNA-protein complex component Cbf5p [Natronomonas pharaonis
DSM 2160]
gi|76558953|emb|CAI50549.1| tRNA/rRNA pseudouridine synthase Cbf5 [Natronomonas pharaonis DSM
2160]
Length = 292
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 156/288 (54%), Gaps = 14/288 (4%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+ +G+INLDKP PS+H+V AW++ + VE+ H+GTLDPKVTG L V ATR +
Sbjct: 16 LEFGVINLDKPPGPSAHQVAAWVRDMAGVEQAAHAGTLDPKVTGCLPVLTGTATRAAQVF 75
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
+ K YV V LH P + + + G ++Q+PP SAV R+LR RT++ +LE
Sbjct: 76 DESRKGYVAVLELHGTAP--SDLESTVAEFEGPLYQKPPRKSAVARRLRTRTVHRLDVLE 133
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
+ R V+ + CE+GTY+R +C +GL +G GGHM LRR ++G ++ +VT D
Sbjct: 134 SEARR--VLLSVECESGTYIRKLCHDIGLAVGTGGHMGPLRRTKTGGF-DDRTLVTFEDF 190
Query: 280 MDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEND 339
D + ++ D L V+ P E L RL V + + I GA + PG+L E D
Sbjct: 191 ADGLAFWRDHDDPELLCDVVAPAERALEGLPRLTVAFSAASEIANGAPVYAPGVLAHELD 250
Query: 340 -IEVGEEVVLMTTKGEAVALG--IAEMTTAVMATCDHGVVARIKRVVM 384
+ G V T G AV LG + + A G VA ++RV++
Sbjct: 251 GADEGSLVACYTPDGAAVCLGWLVGDPDAA------DGTVAELERVLV 292
>gi|256252652|dbj|BAH97723.1| Cbf5 [Pyrobaculum islandicum]
Length = 228
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 141/232 (60%), Gaps = 4/232 (1%)
Query: 118 VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP 177
V AW+K+IL VE+ GH+GTLDPKV+G L + + T+ + + + K YV VA+ H V
Sbjct: 1 VAAWVKKILGVERAGHAGTLDPKVSGVLPIAVAEGTKALLALSRSDKVYVAVAKFHGDV- 59
Query: 178 DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
D K+ L G ++Q+PPL S+VKRQLR R +Y +LLE +D V + EAGT
Sbjct: 60 DEEKLKAVLNEFQGVIYQKPPLRSSVKRQLRTRHVYSLELLE--LDGRYAVIKMHVEAGT 117
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y R + +G +LGVG +M+ELRR+ E D V + DV DA +++ Y D+ YLRR
Sbjct: 118 YARKLIHDIGEVLGVGANMRELRRIAVSCYTE-DETVALQDVADAYYIWRRYGDDTYLRR 176
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
V++P+E + ++ V+D+ V+A+C GA L PG+++FE GE V
Sbjct: 177 VLLPIEEIARHLPKIWVRDSAVDALCNGAPLAAPGVVKFETPFSKGELVAFF 228
>gi|448689511|ref|ZP_21695095.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula japonica DSM
6131]
gi|445777782|gb|EMA28742.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula japonica DSM
6131]
Length = 296
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 151/272 (55%), Gaps = 17/272 (6%)
Query: 97 VDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+D +R +G+INLDKP PS+H+V AWI+ ++ H GTLDPKVTG L V + A R+
Sbjct: 12 LDSLRSFGVINLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLGDAARM 71
Query: 156 VKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYE 214
+ A KEYV V LHD+ P D+ + E ++Q+PP SAVKRQLR R I+
Sbjct: 72 AQVFDNAIKEYVTVLELHDQAPADIGDIVSEFET---EIYQKPPRKSAVKRQLRSRRIHA 128
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
+LE R ++ + C +GTY+R +C +GL G G HM +LRR +G ++ ++
Sbjct: 129 LDILEQGERR--LLLRVRCASGTYIRKLCHDIGLAAGTGAHMGDLRRTATGTF-DDGSLS 185
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
TMHD+MDA ++ DE LR +I P E L R+ + + + GA + PG++
Sbjct: 186 TMHDLMDALAFAED-GDEEQLREIIQPAERALVHLPRITIAPSAAREVAEGAPVYAPGVI 244
Query: 335 RFENDIEVG-------EEVVLMTTKGEAVALG 359
EVG ++V +T G AV LG
Sbjct: 245 E-AGPAEVGGATPEIDSQIVAVTPDGAAVCLG 275
>gi|448668021|ref|ZP_21686264.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula amylolytica
JCM 13557]
gi|445768679|gb|EMA19758.1| H/ACA RNA-protein complex component Cbf5p [Haloarcula amylolytica
JCM 13557]
Length = 296
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 160/296 (54%), Gaps = 19/296 (6%)
Query: 97 VDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+D +R +G++NLDKP PS+H+V AWI+ + H GTLDPKVTG L V + A R+
Sbjct: 12 LDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQNRVAHGGTLDPKVTGCLPVLLGDAARM 71
Query: 156 VKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYE 214
+ A KEYV V LHD+ P D+ + E ++Q+PP SAVKRQLR R I+
Sbjct: 72 AQVFDDAVKEYVTVLELHDQAPADITDIVAEFET---EIYQKPPRKSAVKRQLRSRRIHA 128
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
+LE +R L + + C +GTY+R +C +GL G G HM +LRR +G ++ ++
Sbjct: 129 LDILEQ-AERRL-LLRVRCASGTYIRKLCHDIGLAAGTGAHMGDLRRTATGTF-DDASLS 185
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
TMHD++DA D DE LR +I P E L R+ + + + GA + PG++
Sbjct: 186 TMHDLVDALAFADE-GDEGKLREIIQPAERALVHLPRVTIAPSAAREVEDGAPVYAPGVI 244
Query: 335 RF------ENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
+ E G +VV +T G AV LG T D G+V + RV++
Sbjct: 245 ETGPAEAGDATPETGSQVVCVTPDGTAVCLG----TLVGDPDADSGLVVELDRVLV 296
>gi|284165530|ref|YP_003403809.1| pseudouridylate synthase [Haloterrigena turkmenica DSM 5511]
gi|284015185|gb|ADB61136.1| pseudouridylate synthase TruB domain protein [Haloterrigena
turkmenica DSM 5511]
Length = 304
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 148/280 (52%), Gaps = 16/280 (5%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH+V W++ + +E+ H+GTLDP
Sbjct: 11 PEDRTPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADRAPDATIEQAAHAGTLDP 70
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + KEYV V H VP A + G ++Q+PP
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGHKEYVAVLECHAPVP--ADAESVVAEFEGPIYQKPPR 128
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R IY+ ++LE D R ++ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 129 KSAVARRLRVREIYDLEVLETDERR--LLLRIRCESGTYVRKLCHDLGLALGTGGHMGHL 186
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + + D + + HD +DA + D L V+ P E +L +V+ +
Sbjct: 187 RRTATSPFDDRD-LHSAHDFLDALAYWREDGDPEVLLDVVDPAERILEGLPGVVIAPSAA 245
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+ GA + PG+L +++ GE V T G AV LG
Sbjct: 246 REVANGAPVYDPGVLEVDDEARAGELVACYTPNGAAVCLG 285
>gi|448410986|ref|ZP_21575528.1| H/ACA RNA-protein complex component Cbf5p [Halosimplex carlsbadense
2-9-1]
gi|445670875|gb|ELZ23471.1| H/ACA RNA-protein complex component Cbf5p [Halosimplex carlsbadense
2-9-1]
Length = 289
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 158/294 (53%), Gaps = 11/294 (3%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V AW++ + VE+ H+GTLDPKVTG L + +
Sbjct: 7 PDDRSVDDLLEFGVVNLDKPPGPSAHQVAAWVRDMAGVERAAHAGTLDPKVTGCLPMLLG 66
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + + KEY+ V LH P A + L G ++Q+PP SAV R+LR R
Sbjct: 67 DATRMAQVFDDSDKEYIAVLELHGPAP--ADLRSVLAEFEGDIYQKPPKKSAVVRRLRSR 124
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY LE + R L + CE+GTY+R +C LGL LG G HM LRR +G ++
Sbjct: 125 EIYALDALEVEDRRAL--LRVRCESGTYIRKLCHDLGLALGTGAHMGHLRRTVTGSF-DD 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
+V++HD +DA D D LR V+ P E L + ++ + GA +
Sbjct: 182 RKLVSLHDFVDALAWADE-GDTDPLREVVQPAERALVDLPSATIAESAAREVAEGAPVYA 240
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
PGL+ +D+ G+ V T AV L T A D GVV ++RV++
Sbjct: 241 PGLIDI-DDVFRGDLVACYTPDEAAVCLA----TLAGDPEADSGVVLDLERVLV 289
>gi|212373364|dbj|BAE96940.2| Cbf5 [Metallosphaera sedula DSM 5348]
Length = 226
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 141/218 (64%), Gaps = 4/218 (1%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
W+K + + + GH GTLDPKVTG L + + +AT+++ +GKEYVC+ +H +
Sbjct: 3 WVKTMFNLPRVGHGGTLDPKVTGVLPIGLGKATKIMSVVTKSGKEYVCLMEVHCDFQEER 62
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
A A E G ++Q+PP+ S+VKR++R R IY ++LE + R V+ IS E GTY+R
Sbjct: 63 LRAIAKE-FVGTIYQKPPVRSSVKRRVRKRKIYSLEVLEMEGRR--VLMKISSEPGTYMR 119
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
+C +G++LG G HM+ELRR RSGI E D +VT+ V +A +LY N +E LRR+++
Sbjct: 120 KICHDMGILLGCGAHMRELRRTRSGIFTE-DTVVTLQQVSEALYLYRNCGEEDELRRILI 178
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
P+E+ +++V D TVN++ YG+ LM PG++ F+
Sbjct: 179 PMEMAFCGIPKIIVDDETVNSLAYGSPLMAPGIVAFQG 216
>gi|256252656|dbj|BAH97725.1| Cbf5 [Vulcanisaeta souniana JCM 11219]
Length = 227
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 145/222 (65%), Gaps = 4/222 (1%)
Query: 120 AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDV 179
AWIK++L +++ GHSGTLDP+V+G L + + +T+ + + KEY+ V +LH V D
Sbjct: 2 AWIKKMLNLDRAGHSGTLDPRVSGVLPIALGESTKAMPAINNLDKEYIMVMKLHGDVDD- 60
Query: 180 AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
K+ L TGA++QRPPL SAVKRQLR++ +YE +LLE D L+ ++ E+GTY
Sbjct: 61 GKLRAVLREFTGAIYQRPPLRSAVKRQLRVKHVYELELLERDGKYALI--RMNVESGTYA 118
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
R + +G +LGVG +M+ELRR+R G E + +T+ D+ DA LY +Y E LR +
Sbjct: 119 RKLAYDIGEVLGVGANMRELRRIRVGCFTEKEA-ITLQDLKDAYTLYRDYGIEDLLRTYV 177
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
+E ++ ++ V+D+ V+AIC+GA L +PG+++ N+I+
Sbjct: 178 KSVEYMVGHLPKVWVRDSAVDAICHGAALAVPGIVKLTNNIK 219
>gi|448338099|ref|ZP_21527151.1| H/ACA RNA-protein complex component Cbf5p [Natrinema pallidum DSM
3751]
gi|445623274|gb|ELY76696.1| H/ACA RNA-protein complex component Cbf5p [Natrinema pallidum DSM
3751]
Length = 302
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 165/307 (53%), Gaps = 24/307 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 7 PAARSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVVETLAERGVASTIDRAAHAGTLDP 66
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + GKEYV V H VP A + G ++Q+PP
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGGKEYVAVLECHAPVP--ADAESVVAEFEGPIYQKPPR 124
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R +Y+ ++LE + DR L + I CE+GTYVR +C LGL LG G HM L
Sbjct: 125 KSAVSRRLRVRELYDLEVLEVE-DRRL-LLRIRCESGTYVRKLCHDLGLALGTGAHMGHL 182
Query: 260 RRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
RR + ++ + + HD +DA WL D+ D L ++ P E +L +V+ +
Sbjct: 183 RRTATEPF-DDRTLHSAHDFLDALGFWLEDD--DPEPLYDIVDPAERILEGIPSIVIAEN 239
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
+ GA + PG+L ++ I+ G V T G AV LG E A A D G+V
Sbjct: 240 AAREVANGAPVYAPGVLEADDGIDHGSLVACYTPDGAAVCLG--ERVGA--ADADSGLVV 295
Query: 378 RIKRVVM 384
++RV++
Sbjct: 296 ALERVLV 302
>gi|256252654|dbj|BAH97724.1| Cbf5 [Pyrobaculum organotrophum]
Length = 228
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 141/232 (60%), Gaps = 4/232 (1%)
Query: 118 VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP 177
V AW+K+IL VE+ GH+GTLDPKV+G L + + T+ + + + K YV VA+ H V
Sbjct: 1 VAAWVKKILGVERAGHAGTLDPKVSGVLPIAVAEGTKALLALSRSDKVYVAVAKFHGDV- 59
Query: 178 DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
D ++ L G ++Q+PPL S+VKRQLR R +Y +LLE +D V + EAGT
Sbjct: 60 DEERLKAVLNEFQGVIYQKPPLRSSVKRQLRTRHVYSLELLE--LDGRYAVIKMHVEAGT 117
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y R + +G +LGVG +M+ELRR+ E D V + DV DA +++ Y D+ YLRR
Sbjct: 118 YARKLIHDIGEVLGVGANMRELRRIAVSCYTE-DETVALQDVADAYYIWRRYGDDTYLRR 176
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
V++P+E + ++ V+D+ V+A+C GA L PG+++FE GE V
Sbjct: 177 VLLPIEEIARHLPKIWVRDSAVDALCNGAPLAAPGVVKFETPFSKGELVAFF 228
>gi|336252338|ref|YP_004595445.1| rRNA pseudouridine synthase [Halopiger xanaduensis SH-6]
gi|335336327|gb|AEH35566.1| rRNA pseudouridine synthase [Halopiger xanaduensis SH-6]
Length = 303
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 157/283 (55%), Gaps = 20/283 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P +R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 8 PEERSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVADTLAERGIDATIDQAAHAGTLDP 67
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L + + ATRL + KEYV V H +P A + G ++Q+PP
Sbjct: 68 KVTGCLPIMLGDATRLAQVFLEGSKEYVAVLECHGSLP--ADAESVVAEFEGPIYQKPPR 125
Query: 200 ISAVKRQLRIRTIYESKLLEYD-VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQE 258
SAV R+LR+R IY+ ++LE + DR L++ I CE+GTYVR +C LGL LG GGHM
Sbjct: 126 KSAVARRLRVREIYDLEVLERNEADRQLLL-RIRCESGTYVRKLCHDLGLALGTGGHMGH 184
Query: 259 LRRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + D + + ++ +DA WL D+ D L ++ P E +L R+V+ +
Sbjct: 185 LRRTATTPFDDRD-LYSAYEFLDALAFWLEDD--DPEPLSEIVDPAERILEDIPRVVIPE 241
Query: 317 TTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+ + GA + PG+L ++D+ G+ V T G AV LG
Sbjct: 242 SAAREVANGAPVYEPGVLEVDSDVGEGDLVACYTPNGAAVCLG 284
>gi|146302842|ref|YP_001190158.1| PUA domain-containing protein [Metallosphaera sedula DSM 5348]
gi|145701092|gb|ABP94234.1| tRNA pseudouridine synthase B [Metallosphaera sedula DSM 5348]
Length = 233
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 148/232 (63%), Gaps = 7/232 (3%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
+GKEYVC+ +H + A A E G ++Q+PP+ S+VKR++R R IY ++LE +
Sbjct: 7 SGKEYVCLMEVHCDFQEERLRAIAKE-FVGTIYQKPPVRSSVKRRVRKRKIYSLEVLEME 65
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
R V+ IS E GTY+R +C +G++LG G HM+ELRR RSGI E D +VT+ V +
Sbjct: 66 GRR--VLMKISSEPGTYMRKICHDMGILLGCGAHMRELRRTRSGIFTE-DTVVTLQQVSE 122
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
A +LY N +E LRR+++P+E+ +++V D TVN++ YG+ LM PG++ F+ +
Sbjct: 123 ALYLYRNCGEEDELRRILIPMEMAFCGIPKIIVDDETVNSLAYGSPLMAPGIVAFQG-FK 181
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
G+ V L+T KGE +ALG A + + M G V + +RV+MD+D YP+ W
Sbjct: 182 KGDTVALITWKGEGIALGKALVDSVSMG--KRGEVVKPERVLMDKDVYPKAW 231
>gi|448623416|ref|ZP_21669959.1| H/ACA RNA-protein complex component Cbf5p [Haloferax denitrificans
ATCC 35960]
gi|445752818|gb|EMA04240.1| H/ACA RNA-protein complex component Cbf5p [Haloferax denitrificans
ATCC 35960]
Length = 289
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 148/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + V++ HSGTLDPKVTG L +
Sbjct: 6 PEHRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMADVDRAAHSGTLDPKVTGCLPTLLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR+ + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATRMAQVFLEGAKEYVSVLELHGPAP--ADIDSTVAEFESKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY+ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + +
Sbjct: 124 EIYDLDLLEVK-DRQ-ALLRIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATDPFDDA 181
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
D +VT+HD+ DA DE++LR V+ E L+ + + ++ + GA +
Sbjct: 182 D-LVTLHDLADALAFAAE-GDESWLRDVVSSAERALSHLPSVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ + D G+ V T G AV LG
Sbjct: 240 PGVFDVDADAARGDLVACFTDDGSAVCLG 268
>gi|212373340|dbj|BAE96928.2| Cbf5 [Desulfurococcus mobilis]
Length = 228
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 147/233 (63%), Gaps = 7/233 (3%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP- 177
VAW+K++ VEK GH GTLDPKVTG L V + +T+++ + + KEYV V +LH V
Sbjct: 1 VAWVKKMFGVEKAGHGGTLDPKVTGVLPVGLANSTKVIGNVIHSVKEYVMVIQLHGDVAE 60
Query: 178 -DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAG 236
D+ +VA G ++QRPPL S+VKR +R+R I+E ++LE V + + + G
Sbjct: 61 QDLRRVAGYFR---GEIYQRPPLRSSVKRAIRVRRIHEIEVLE--VRGRFALIRVLSDPG 115
Query: 237 TYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLR 296
TY+R + +GL+LGVG HM+ELRR R+G E++ +V + DV +A L+ + DE YLR
Sbjct: 116 TYMRKLAHDIGLLLGVGAHMRELRRTRTGPYREDETLVRLQDVSEALLLWRSNGDERYLR 175
Query: 297 RVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
R+++P+E + ++++ DT V+AI +GA L PG+ R DI G V ++
Sbjct: 176 RIVLPVETSIAHLPKIMILDTAVDAIAHGANLAAPGVARLTRDIAKGSTVAIL 228
>gi|448317109|ref|ZP_21506667.1| H/ACA RNA-protein complex component Cbf5p [Natronococcus jeotgali
DSM 18795]
gi|445604533|gb|ELY58480.1| H/ACA RNA-protein complex component Cbf5p [Natronococcus jeotgali
DSM 18795]
Length = 300
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 154/282 (54%), Gaps = 22/282 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR----------VEKTGHSGTLDPK 140
P +R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDPK
Sbjct: 7 PEERSPAELLAFGVVNLDKPPGPSSHQVSGWLRDAVADALAERGAEPIDRAAHAGTLDPK 66
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPL 199
VTG L V + ATRL ++ KEYV V H VP D A V E G ++Q+PP
Sbjct: 67 VTGCLPVMLGDATRLAQTFLEGEKEYVTVLECHGSVPGDAADVVAEFE---GPIYQKPPR 123
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR R IY+ ++LE + DR L + I CE+GTYVR +C LGL LG G HM L
Sbjct: 124 KSAVSRRLRTREIYDLEVLEAE-DRRL-LLRIGCESGTYVRKLCHDLGLALGTGAHMGHL 181
Query: 260 RRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
RR + ++ + T D DA WL D+ D + V+ P E +L R+V+ ++
Sbjct: 182 RRTATTPF-DDTTLHTARDFYDALAFWLEDDDPDPLF--EVVDPAERILEGIPRVVIAES 238
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+ GA + PG+L +D+E G V T G AV LG
Sbjct: 239 AAEQVATGAPVYAPGVLE-ADDVERGSLVACTTPDGAAVCLG 279
>gi|256252642|dbj|BAH97718.1| Cbf5 [Caldococcus noboribetus]
Length = 228
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 147/235 (62%), Gaps = 13/235 (5%)
Query: 120 AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH-----D 174
AW+KR+L V++ GH GTLDPKVTG L + ++ T+++ S + K YVCV +LH +
Sbjct: 2 AWVKRLLGVKRAGHGGTLDPKVTGVLPIALEHMTKIMGSVVHSRKAYVCVMQLHGDVSEE 61
Query: 175 KVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCE 234
++ DVAK TG ++QRPP+ S VKR LR R I+ ++LE V L + + +
Sbjct: 62 RLRDVAK------EFTGTIYQRPPVRSNVKRALRTRRIFSLEVLE--VRGRLALLRVESD 113
Query: 235 AGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAY 294
GTY+R +C +GL+LGVG HM+ELRRV++G E+ N+VT+ ++ +A + + + Y
Sbjct: 114 PGTYMRKLCWDMGLVLGVGAHMRELRRVKTGPFDEDHNLVTLQELSEAVYRFREEGKDDY 173
Query: 295 LRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
LRR ++P EV+ ++V++D+ V ++ GA L PG+ +D++ G +V +
Sbjct: 174 LRRAVLPGEVITCELPKVVLRDSAVESVVNGAPLAAPGVSLLTSDVKAGSQVAMF 228
>gi|389847937|ref|YP_006350176.1| tRNA pseudouridine synthase B [Haloferax mediterranei ATCC 33500]
gi|448618039|ref|ZP_21666384.1| H/ACA RNA-protein complex component Cbf5p [Haloferax mediterranei
ATCC 33500]
gi|388245243|gb|AFK20189.1| tRNA pseudouridine synthase B [Haloferax mediterranei ATCC 33500]
gi|445747594|gb|ELZ99049.1| H/ACA RNA-protein complex component Cbf5p [Haloferax mediterranei
ATCC 33500]
Length = 289
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 150/269 (55%), Gaps = 6/269 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R + D + +G++NLDKP PS+H+V W++ + +++ HSGTLDPKVTG L + +
Sbjct: 6 PEDRSVDDLLSFGVVNLDKPPGPSAHQVTGWVRDMAGLDRAAHSGTLDPKVTGCLPILLG 65
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
AT + + KEYV V LH P A + + ++Q+PP SAV R+LR+R
Sbjct: 66 DATGMAQVFLEGSKEYVSVLELHGPAP--ADIESTVAEFETKLYQKPPRKSAVSRRLRVR 123
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
IY+ LLE DR + I CE+GTY+R +C LGL LG GGHM LRR + ++
Sbjct: 124 EIYDLDLLEVQ-DRQ-ALLRIRCESGTYIRKLCHDLGLALGTGGHMGHLRRTATDPF-DD 180
Query: 271 DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
+V +HD DA + DE+++R ++ P E LT + + ++ + GA +
Sbjct: 181 STLVNLHDFKDA-LAFAEEGDESWIRDIVSPAERALTHLPAVTIANSAAREVANGAPVYA 239
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALG 359
PG+ ++D + G+ V T G AV LG
Sbjct: 240 PGVFDVDDDADHGDLVACFTDDGSAVCLG 268
>gi|448309730|ref|ZP_21499585.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum bangense
JCM 10635]
gi|445589396|gb|ELY43629.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum bangense
JCM 10635]
Length = 306
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 163/308 (52%), Gaps = 26/308 (8%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P +R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 11 PDERTPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVVDTLSERGADVSIDQAAHAGTLDP 70
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPP 198
KVTG L V + ATRL + KEYV V H VP D V E G ++Q+PP
Sbjct: 71 KVTGCLPVMLGEATRLAQVFLEGPKEYVAVLECHAPVPVDAESVIAEFE---GPIYQKPP 127
Query: 199 LISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQE 258
SAV R+LR+R +Y+ ++LE D DR ++ I CE+GTYVR +C LGL LG GGHM
Sbjct: 128 RKSAVSRRLRVREMYDLEVLETD-DRQ-ILLRIRCESGTYVRKLCHDLGLALGTGGHMGH 185
Query: 259 LRRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + D + + + +DA WL D+ D L V+ P E +L R+ + +
Sbjct: 186 LRRTATTPFDDTD-LHSASEFLDALAFWLEDD--DPEPLYEVVDPAERILEDIPRVTIAE 242
Query: 317 TTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVV 376
+ GA + PG+L ++ + G+ + T G AV LG T D G V
Sbjct: 243 NAAREVANGAPVYAPGVLGIDDGVATGDLLACHTPNGAAVCLG----TLVGDPKADQGTV 298
Query: 377 ARIKRVVM 384
++RV++
Sbjct: 299 VSLERVLV 306
>gi|257076587|ref|ZP_05570948.1| H/ACA RNA-protein complex component Cbf5p [Ferroplasma acidarmanus
fer1]
Length = 351
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 149/257 (57%), Gaps = 5/257 (1%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G I +DKP P+SH++ AW++ I ++ GH GTLDP V+G L++ + +AT+L+
Sbjct: 13 GFIVIDKPKGPTSHQIDAWVREITGEKRVGHIGTLDPNVSGVLVMALGKATKLIDIVHER 72
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEY+ V RL+ D + + + TG ++Q PP+ SAV RQ+R RTIY +LE +
Sbjct: 73 PKEYISVMRLYSTA-DTDNIMKVFKEFTGKIYQLPPVRSAVSRQVRERTIYNMDVLE--I 129
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
L++F + CE+GTY+RT+C +G ++G G M +LRR+ +G E+ ++ T+ ++ D+
Sbjct: 130 QEKLILFRVKCESGTYIRTLCTDMGYVIGTGAQMADLRRLSTGQFNES-HIHTLQELSDS 188
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L D + +++P++ + ++VVK+T + I +G+ + G+ DI
Sbjct: 189 VVL-KKQGDTSLFDNMVIPMDFVFADSPKVVVKNTAIKNIMHGSDIYPSGIKALIGDIHK 247
Query: 343 GEEVVLMTTKGEAVALG 359
G V + + E +A G
Sbjct: 248 GSRVAIYSGDNELLAFG 264
>gi|448362271|ref|ZP_21550882.1| H/ACA RNA-protein complex component Cbf5p [Natrialba asiatica DSM
12278]
gi|445648792|gb|ELZ01740.1| H/ACA RNA-protein complex component Cbf5p [Natrialba asiatica DSM
12278]
Length = 308
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 162/311 (52%), Gaps = 28/311 (9%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 9 PADRSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVAETLAERDTGETIDQAAHAGTLDP 68
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L + ATRL + KEYV V H +P AK L A G ++Q+PP
Sbjct: 69 KVTGCLPTMLGEATRLAQVFLEGEKEYVAVLECHGTIPTDAK--SVLAAFEGPIYQKPPR 126
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R IY+ +LE D R L+ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 127 KSAVSRRLRVREIYDLDVLERD-GRQLL-LRIRCESGTYVRKLCHDLGLALGTGGHMGHL 184
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + + D + T + +DA + D LR V+ P E +L RL + D+
Sbjct: 185 RRTATTPFDDTD-LYTATEFLDALAFWIEDADPEPLRAVVDPAERILEGIPRLTIADSAA 243
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEE------VVLMTTKGEAVALGIAEMTTAVMATCDH 373
+ GA + PG+L ++D+ + V T G AV LG E+ AT
Sbjct: 244 REVANGAPVYAPGVL--DSDVSPDDPSTDRPLVACYTPNGAAVCLG--ELVGDPEAT--S 297
Query: 374 GVVARIKRVVM 384
GVV ++RV++
Sbjct: 298 GVVVDLERVLV 308
>gi|345005964|ref|YP_004808817.1| tRNA pseudouridine synthase B [halophilic archaeon DL31]
gi|344321590|gb|AEN06444.1| tRNA pseudouridine synthase B [halophilic archaeon DL31]
Length = 300
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 166/310 (53%), Gaps = 23/310 (7%)
Query: 87 NGYSPLKRP-----LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKV 141
G SPL+ P + D +R+G++NLDKPA PS+H+V AW++ + +E+ H+GTLDPKV
Sbjct: 2 TGESPLRAPPGERSVEDLLRFGVVNLDKPAGPSAHQVAAWVRDLANLERAAHAGTLDPKV 61
Query: 142 TGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLIS 201
TG L + ATRL KEY+ V LH P V + ++Q+PP S
Sbjct: 62 TGCLPSLLGDATRLAPVFLEGAKEYIAVLELHGLPP--TDVEATIAEFETDLYQKPPRKS 119
Query: 202 AVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRR 261
AV R+LR R IY+ ++LE ++ + I CE+GTY+R +C LG+ LG GGHM LRR
Sbjct: 120 AVTRRLRSREIYDLEVLE--LEERQALLHIRCESGTYIRKLCHDLGMALGTGGHMGALRR 177
Query: 262 VRSGILGENDNMVTMHDVMDA-QWLY-DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
V + + D +VT+ D+ D W D Y E YLR ++ P E + + +
Sbjct: 178 VATDPFDDTD-LVTLQDLADGLAWAREDGY--EEYLREIVSPAERSMDHLPAITIARNAA 234
Query: 320 NAICYGAKLMIPGLLRFEN---DIEVGEEVVL--MTTKGEAVALGIAEMTTAVMATCDHG 374
+ GA + PG++ ++ + G + +L T G AV LG E+ A D G
Sbjct: 235 EQVAQGAPVYAPGVVETDDAAAALSPGADDLLACYTPDGSAVCLG--ELVGDPDA--DEG 290
Query: 375 VVARIKRVVM 384
V +KRV++
Sbjct: 291 AVVSLKRVLV 300
>gi|448399345|ref|ZP_21570647.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena limicola
JCM 13563]
gi|445669252|gb|ELZ21865.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena limicola
JCM 13563]
Length = 302
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 163/313 (52%), Gaps = 24/313 (7%)
Query: 85 LPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGH 133
+P P +R + + +G++NLDKP PSSH+V W++ + +++ H
Sbjct: 1 MPLRGPPEERSPTELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADCGADVTIDRAAH 60
Query: 134 SGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAV 193
+GTLDPKVTG L + + ATRL KEYV V H VP A + G +
Sbjct: 61 AGTLDPKVTGCLPIMLGDATRLAPVFLEGAKEYVAVLECHAPVP--ADAESVVAEFEGPI 118
Query: 194 FQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVG 253
+Q+PP SAV R+LR+R IY+ ++LE + R LV I CE+GTYVR +C LGL LG G
Sbjct: 119 YQKPPRKSAVSRRLRVREIYDLEVLEAEERRLLV--RIRCESGTYVRKLCHDLGLALGTG 176
Query: 254 GHMQELRRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKR 311
HM LRR + ++ + + HD +DA WL D+ D Y V+ P E +L
Sbjct: 177 AHMGHLRRTMTEPF-DDRTLHSAHDFLDALAFWLEDDDPDPLY--EVVDPAERILEGIPS 233
Query: 312 LVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATC 371
+V+ ++ + GA + PG+L ++DIE V T G AV LG T
Sbjct: 234 VVIAESAAREVAEGAPVYAPGVLDADDDIERDSLVACYTPNGAAVCLG----TFVGDLEA 289
Query: 372 DHGVVARIKRVVM 384
D G+ ++RV++
Sbjct: 290 DSGLAVDLERVLV 302
>gi|256252650|dbj|BAH97722.1| Cbf5 [Pyrobaculum arsenaticum]
Length = 228
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 145/232 (62%), Gaps = 4/232 (1%)
Query: 118 VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP 177
V AW+K+IL VE+ GH+GTLDPKV+G L + + T+++ + + K YV VA+ H V
Sbjct: 1 VAAWVKKILGVERAGHAGTLDPKVSGVLPIAVAEGTKVLMALSRSDKVYVAVAKFHGDV- 59
Query: 178 DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
D ++ L G ++Q+PPL SAVKRQLR R ++ +LLE + R+ V+ + EAGT
Sbjct: 60 DEERLRAVLREFQGEIYQKPPLRSAVKRQLRTRRVFSLELLELE-GRYAVIK-MHVEAGT 117
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y R + +G +LGVG +M+ELRRV E D VT+ DV DA +++ Y D+ YLR
Sbjct: 118 YARKIIHDIGEVLGVGANMRELRRVAVTCFTE-DEAVTLQDVADAYYIWKKYGDDTYLRS 176
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
V++P+E + ++ V+D+ V+A+C+GA L PG+ +FE G+ V +
Sbjct: 177 VLLPIEEIARHLPKIWVRDSAVDAVCHGAPLAAPGISKFEVPFSKGDIVAMF 228
>gi|256252632|dbj|BAH97713.1| Cbf5 [Desulfurococcus mucosus]
Length = 228
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 147/233 (63%), Gaps = 7/233 (3%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP- 177
VAW+K++ VEK GH GTLDPKVTG L V + +T+++ + + KEYV V +LH V
Sbjct: 1 VAWVKKMFGVEKAGHGGTLDPKVTGVLPVGLANSTKVIGNVIHSVKEYVMVIQLHGDVAE 60
Query: 178 -DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAG 236
D+ +VA G ++QRPPL S+VKR +R+R I+E ++LE V + + + G
Sbjct: 61 QDLRRVAGYFR---GEIYQRPPLRSSVKRAIRVRRIHEIEVLE--VRGRFALIRVLSDPG 115
Query: 237 TYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLR 296
TY+R + +GL+LGVG HM+ELRR R+G E++ +V + DV +A L+ + DE YLR
Sbjct: 116 TYMRKLAHDIGLLLGVGAHMRELRRTRTGPYREDETLVRLQDVSEALLLWRSNGDERYLR 175
Query: 297 RVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
R+++P+E + ++++ DT V+AI +GA L PG+ R +I G V ++
Sbjct: 176 RIVLPVETSIAHLPKIMILDTAVDAIAHGANLAAPGVARLTRNIAKGSTVAIL 228
>gi|212373338|dbj|BAE96927.2| Cbf5 [Caldisphaera lagunensis DSM 15908]
Length = 228
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 119 VAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPD 178
VAWIKR+L V+K GH+GTLDP+V+G L V + T+++ + K YVCV +LH V D
Sbjct: 1 VAWIKRLLNVDKAGHAGTLDPRVSGVLPVTLGHMTKIIGYITHSNKTYVCVMQLHKDV-D 59
Query: 179 VAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
++ R + G ++Q+PP+ S VKR LR R I+ + E VDR V+ I EAGTY
Sbjct: 60 QNELKRVINDFIGTIYQKPPIRSHVKRTLRTRKIFNITINEI-VDRK-VLLTIESEAGTY 117
Query: 239 VRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV 298
+R +C +GLILG+G HM+ELRR+++G E+ +VTM D+ +A + + + LR+V
Sbjct: 118 MRKLCWDIGLILGIGAHMRELRRIKTGPFNEDYYLVTMQDLTEAVYRFKTEEKDDLLRKV 177
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
I+P E + +++V+DT V ++ G+ L IPG+ + I G+ V L+
Sbjct: 178 IIPGEYSVCELPKVLVRDTAVESVINGSPLAIPGISYYNEGINRGDLVSLL 228
>gi|13541183|ref|NP_110871.1| H/ACA RNA-protein complex component Cbf5p [Thermoplasma volcanium
GSS1]
gi|37089629|sp|Q97BU9.1|TRUB_THEVO RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
gi|14324571|dbj|BAB59498.1| centromere/microtubule-binding protein [Thermoplasma volcanium
GSS1]
Length = 353
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 151/264 (57%), Gaps = 5/264 (1%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G I +DKP P+SH+V W+++IL EK GH GTLDP VTG L++ I +A RL+
Sbjct: 10 GFIVIDKPQGPTSHQVDYWVRQILGTEKVGHIGTLDPNVTGVLVMAIGKAVRLIDVVHEK 69
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYV V R H + + +V T ++Q PP+ SAV R++RI+TIYE ++E
Sbjct: 70 PKEYVGVMRFHSDISE-EEVREVFRKFTTRIYQLPPVRSAVSRKVRIKTIYELDMIEKK- 127
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
D+ +V+F + CE+GTY+RT+C +G + G GG M +LRR+ +G E D +T+ D+
Sbjct: 128 DK-IVLFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRISTGPFKE-DIAITLQDLQAY 185
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L +DE + R + + Y ++V K + V I +G+ L + G+ + + +
Sbjct: 186 VDLAKEGKDELF-RSHFLDMTYAFIDYPKIVAKKSAVENIAHGSDLYVGGVKLIDGNFQK 244
Query: 343 GEEVVLMTTKGEAVALGIAEMTTA 366
G+ V +++ E + GIA ++
Sbjct: 245 GDRVCVLSEDNELLGTGIARCDSS 268
>gi|332796420|ref|YP_004457920.1| H/ACA RNA-protein complex component, Cbf5p, C-terminal exon
[Acidianus hospitalis W1]
gi|332694155|gb|AEE93622.1| H/ACA RNA-protein complex component, Cbf5p, C-terminal exon
[Acidianus hospitalis W1]
Length = 221
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 144/221 (65%), Gaps = 4/221 (1%)
Query: 173 HDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWIS 232
H+KV D+ V + E G ++QRPP+ S+VKR+LR R +++ ++LE D+ L + IS
Sbjct: 4 HEKV-DLPIVKKIAEEFKGTIYQRPPVRSSVKRRLRTRKVFDIEVLEGKDDK-LFLLKIS 61
Query: 233 CEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDE 292
E GTY+R +C +G+ILG G HM+ELRR+RSGI EN +VT+ +V +A +++ N +DE
Sbjct: 62 SEPGTYMRKICHDMGIILGTGAHMRELRRIRSGIFTEN-GLVTLQEVSEALYMWKNCKDE 120
Query: 293 AYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTK 352
LR++++P+E+ L ++++ D VNAI YGA PG++ ++N + G+ V L+T K
Sbjct: 121 TDLRKILLPMEIGLCGIPKIILDDNAVNAIAYGATANAPGIVAYQN-FKKGDLVGLITLK 179
Query: 353 GEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
GE VA+G A + + + G V + R+++ RD YPR W
Sbjct: 180 GEGVAIGKALVDSNSVQQMKKGEVIKPNRILIKRDVYPRAW 220
>gi|448369906|ref|ZP_21556359.1| H/ACA RNA-protein complex component Cbf5p [Natrialba aegyptia DSM
13077]
gi|445650346|gb|ELZ03270.1| H/ACA RNA-protein complex component Cbf5p [Natrialba aegyptia DSM
13077]
Length = 308
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 162/311 (52%), Gaps = 28/311 (9%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR-----------VEKTGHSGTLDP 139
P R + + +G+INLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 9 PADRSPAELLTFGVINLDKPPGPSSHQVSGWLRDAVAETLAERDTGEAIDQAAHAGTLDP 68
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L + ATRL + KEYV V H +P AK L+ G ++Q+PP
Sbjct: 69 KVTGCLPTMLGEATRLAQVFLEGEKEYVAVLECHGTIPTDAK--SILDEFEGPIYQKPPR 126
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R IY+ +LE D R L+ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 127 KSAVSRRLRVREIYDLDVLERD-GRQLL-LRIRCESGTYVRKLCHDLGLALGTGGHMGHL 184
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + + D + T + +DA + D LR V+ P E +L RL + D+
Sbjct: 185 RRTATTPFDDTD-LYTATEFLDALAFWIEDADPEPLRAVVDPAERILEGIPRLTIADSAA 243
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEE------VVLMTTKGEAVALGIAEMTTAVMATCDH 373
+ GA + PG+L ++D+ + V T G AV LG E+ AT
Sbjct: 244 REVANGAPVYAPGVL--DSDVSPDDPSTDRPLVACYTPNGAAVCLG--ELVGDPEAT--S 297
Query: 374 GVVARIKRVVM 384
GVV ++RV++
Sbjct: 298 GVVVDLERVLV 308
>gi|448386127|ref|ZP_21564335.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena
thermotolerans DSM 11522]
gi|445656025|gb|ELZ08867.1| H/ACA RNA-protein complex component Cbf5p [Haloterrigena
thermotolerans DSM 11522]
Length = 302
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 20/305 (6%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P +R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 7 PAERSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVAETLADRGAAATIDRAAHAGTLDP 66
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + KEY V H VP A + G ++Q+PP
Sbjct: 67 KVTGCLPVMLGDATRLAQVFLEGAKEYTAVLECHAPVP--ADAESVVAEFEGPIYQKPPR 124
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R I + ++LE + DR L+ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 125 KSAVARRLRVREICDLEVLEAE-DRRLL-LRIRCESGTYVRKLCHDLGLALGTGGHMGHL 182
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + ++ + + HD +DA + D L V+ P E +L +VV ++
Sbjct: 183 RRTATDPF-DDRTLHSAHDFLDALAFWVEDDDPEPLFDVVDPAERILEGIPSVVVAESAA 241
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARI 379
I GA + PG++ ++ IE G V T AV LG E+ + A D G+V +
Sbjct: 242 REIAQGAPVYGPGVIEADDGIEQGSLVACYTPDDAAVCLG--ELVASPDA--DEGIVVDL 297
Query: 380 KRVVM 384
+RV++
Sbjct: 298 ERVLV 302
>gi|448715153|ref|ZP_21702344.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma
nitratireducens JCM 10879]
gi|445788045|gb|EMA38770.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma
nitratireducens JCM 10879]
Length = 303
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 163/306 (53%), Gaps = 23/306 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P +R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 9 PDERSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADRGPEASIDRAAHAGTLDP 68
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPP 198
KVTG L + + ATRL + KEYV V H +P D A + A E G ++Q+PP
Sbjct: 69 KVTGCLPIMLGDATRLAQVFLEGPKEYVAVLECHGSIPSDAASIVAAFE---GPIYQKPP 125
Query: 199 LISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQE 258
SAV R+LR+R IY+ ++LE V+ ++ I CE+GTYVR +C LGL LG GGHM +
Sbjct: 126 RKSAVARRLRVREIYDLEVLE--VEERRLLLRIRCESGTYVRKLCHDLGLALGTGGHMGD 183
Query: 259 LRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTT 318
LRR + + D + + +DA + D L V+ P E +L +V+ +
Sbjct: 184 LRRTATSPFDDTD-LHSAQAFLDALGFWVEDDDPEPLYEVVDPAERILEELPGVVIAPSA 242
Query: 319 VNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVAR 378
+ GA + PG+L ++ E G+ V T G AV LG E A + GVV
Sbjct: 243 AREVAEGAPVYAPGVLEVDDPTE-GDLVACYTPDGAAVCLG--EFVGP--ADAESGVVVD 297
Query: 379 IKRVVM 384
++RV++
Sbjct: 298 LERVLI 303
>gi|212373379|dbj|BAE96947.2| Cbf5 [Pyrobaculum oguniense TE7]
Length = 227
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 144/230 (62%), Gaps = 4/230 (1%)
Query: 120 AWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDV 179
AW+K+IL VE+ GH+GTLDPKV+G L + + T+++ + + K YV VA+ H V D
Sbjct: 2 AWVKKILGVERAGHAGTLDPKVSGVLPIAVAEGTKVLMALSRSDKVYVAVAKFHGDV-DE 60
Query: 180 AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
++ L G ++Q+PPL SAVKRQLR R ++ +LLE + R+ V+ + EAGTY
Sbjct: 61 ERLRAVLREFQGEIYQKPPLRSAVKRQLRTRRVFSLELLELE-GRYAVIK-MHVEAGTYA 118
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
R + +G +LGVG +M+ELRRV E D VT+ D+ DA +++ Y D+ YLR V+
Sbjct: 119 RKIIHDIGEVLGVGANMRELRRVAVTCFTE-DEAVTLQDLADAYYIWKKYGDDTYLRSVL 177
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+P+E + ++ V+D+ V+A+C+GA L PG+ +FE G+ V +
Sbjct: 178 LPIEEIARHLPKIWVRDSAVDAVCHGAPLAAPGISKFEVPFSKGDIVAMF 227
>gi|289579959|ref|YP_003478425.1| pseudouridylate synthase TruB domain-containing protein [Natrialba
magadii ATCC 43099]
gi|448281196|ref|ZP_21472503.1| H/ACA RNA-protein complex component Cbf5p [Natrialba magadii ATCC
43099]
gi|289529512|gb|ADD03863.1| pseudouridylate synthase TruB domain protein [Natrialba magadii
ATCC 43099]
gi|445579126|gb|ELY33522.1| H/ACA RNA-protein complex component Cbf5p [Natrialba magadii ATCC
43099]
Length = 314
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 152/291 (52%), Gaps = 28/291 (9%)
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------------RVEKTG 132
+P R + +++G++NLDKP PSSH+V W++ + +++
Sbjct: 10 APGDRTPAELLQFGVVNLDKPPGPSSHQVSGWLRDAVADALAEADQSEDSDTSPTIDQAA 69
Query: 133 HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGA 192
H+GTLDPKVTG L + ATRL + KEYV V H +P A V + G
Sbjct: 70 HAGTLDPKVTGCLPTMLGDATRLAQVFLEGHKEYVAVLECHGSIP--ADVESTVAEFEGP 127
Query: 193 VFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGV 252
++Q+PP SAV R+LR+R IYE +LE DR L+ I CE+GTYVR +C LGL LG
Sbjct: 128 IYQKPPRKSAVSRRLRVREIYELDVLEQG-DRQLL-LRIRCESGTYVRKLCHDLGLALGT 185
Query: 253 GGHMQELRRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYK 310
GGHM LRR + + D + T + +DA WL D+ D + L ++ P E +L
Sbjct: 186 GGHMGHLRRTATSPFDDTD-LYTATEFLDALAFWLEDD--DPSLLYDIVDPAERILEEIP 242
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFEND--IEVGEEVVLMTTKGEAVALG 359
LV+ T + GA + PG+ + D +E G+ V T G AV LG
Sbjct: 243 HLVIDSTAAREVAEGAPVYAPGVRKVVADTALERGDLVACYTQVGSAVCLG 293
>gi|161760539|ref|NP_394700.2| H/ACA RNA-protein complex component Cbf5p [Thermoplasma acidophilum
DSM 1728]
gi|37154785|sp|Q9HIT4.2|TRUB_THEAC RecName: Full=Probable tRNA pseudouridine synthase B; AltName:
Full=tRNA pseudouridine(55) synthase; Short=Psi55
synthase; AltName: Full=tRNA pseudouridylate synthase;
AltName: Full=tRNA-uridine isomerase
Length = 365
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 147/263 (55%), Gaps = 5/263 (1%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G + LDKP P+SH+V W++ IL +EK H GTLDP VTG L + I +A RLV +
Sbjct: 8 GFVVLDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDVVHES 67
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYV V R ++ + + +V + TG ++Q PP+ SAV R LRI+T+Y LLE
Sbjct: 68 PKEYVGVMRFYEDITE-EEVRYYFKKFTGRIYQLPPVRSAVARSLRIKTVYSLDLLEKK- 125
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
DR LV+F + CE+GTY+RT+C +G + G GG M +LRR +G E D +T+ D
Sbjct: 126 DR-LVLFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRTSTGPFSE-DRCITLQDFAAM 183
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L D+ LR I+ + Y ++VVK + + I +G+ L G+ +
Sbjct: 184 VELARKGEDKL-LRDHILDMTYAFKDYPKIVVKRSAMRNIAHGSDLYAGGIKIIDGKFRK 242
Query: 343 GEEVVLMTTKGEAVALGIAEMTT 365
GE V +++ + V GIA ++
Sbjct: 243 GERVAVISEDNDLVGTGIAMCSS 265
>gi|383625235|ref|ZP_09949641.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma lacisalsi
AJ5]
gi|448699352|ref|ZP_21699286.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma lacisalsi
AJ5]
gi|445780337|gb|EMA31229.1| H/ACA RNA-protein complex component Cbf5p [Halobiforma lacisalsi
AJ5]
Length = 304
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 161/305 (52%), Gaps = 20/305 (6%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P +R D + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 9 PDERSPADLLTFGVVNLDKPPGPSSHQVSGWLRDAVDETLADRGLEASIDRAAHAGTLDP 68
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L V + ATRL + KEYV V H VP A + G ++Q+PP
Sbjct: 69 KVTGCLPVMLGDATRLAQVFLEGPKEYVAVLECHGSVP--ADTESIVAEFEGPIYQKPPR 126
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R +Y+ ++LE + DR L++ I CE+GTY+R +C LGL LG G HM +L
Sbjct: 127 KSAVARRLRVRELYKLEVLEAE-DRRLLL-RIECESGTYIRKLCHDLGLALGTGAHMGDL 184
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + + D + + + +DA + D L ++ P E +L + + +
Sbjct: 185 RRTATSPFDDRD-LHSAQEFLDALAFWVEDDDPEPLYEIVDPAERILEGIPGVSIAPSAA 243
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARI 379
+ GA + PG++ ++ IE GE V T G AV LG E A GVV +
Sbjct: 244 REVAEGAPVYAPGVIEVDDGIESGELVACYTPDGAAVCLG--EFVGP--ADAGSGVVVDL 299
Query: 380 KRVVM 384
+RV++
Sbjct: 300 ERVLV 304
>gi|448298501|ref|ZP_21488530.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum tibetense
GA33]
gi|445591697|gb|ELY45898.1| H/ACA RNA-protein complex component Cbf5p [Natronorubrum tibetense
GA33]
Length = 306
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 157/305 (51%), Gaps = 20/305 (6%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R V+ + +G++NLDKP PSSH+V W++ + +E+ H+GTLDP
Sbjct: 11 PDDRSPVELLTFGVVNLDKPPGPSSHQVSGWLRDSVAETLAERGADATLEQAAHAGTLDP 70
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L + + ATRL + KEY+ V H VP A V + G ++Q+PP
Sbjct: 71 KVTGCLPLMLGEATRLAQVFLEGSKEYIAVLECHAPVP--ADVESVVAEFEGPIYQKPPR 128
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R IY+ ++LE D V+ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 129 KSAVSRRLRVREIYDLEVLE--TDERQVLLRIRCESGTYVRKLCHDLGLALGTGGHMGHL 186
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + ++D + + D +DA + D L + P E +L + + +
Sbjct: 187 RRSATTPFDDSD-LHSTSDFLDALAFWVEDDDPDPLFEAVDPAERILEDIPSITIAENAA 245
Query: 320 NAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARI 379
+ GA + PG+L + + G+ V T AV LG E A D GVV +
Sbjct: 246 REVANGAPVYAPGVLAVDAGVTEGDLVACYTPNEAAVCLG--EFVGD--ADADRGVVVSL 301
Query: 380 KRVVM 384
+RV++
Sbjct: 302 ERVLV 306
>gi|448738520|ref|ZP_21720543.1| H/ACA RNA-protein complex component Cbf5p [Halococcus thailandensis
JCM 13552]
gi|445801404|gb|EMA51738.1| H/ACA RNA-protein complex component Cbf5p [Halococcus thailandensis
JCM 13552]
Length = 290
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 150/272 (55%), Gaps = 8/272 (2%)
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCI 149
+P R + + +G++NLDKP PS+H+V W++ ++ ++ H+GTLDPKVTG L + +
Sbjct: 4 APADRTAEERLSFGVVNLDKPPGPSAHQVTGWVRDLVGTDRAAHAGTLDPKVTGCLPILL 63
Query: 150 DRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
ATRL + KEY+ V LH + P+ + L G ++Q+PP SAV R+LR
Sbjct: 64 GDATRLAQVFLEGEKEYIAVLELHGRAPE--SLDDVLAEFEGEIYQKPPKKSAVARRLRT 121
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
R + E LE + R L I CE+GTYVR +C LG LG G HM +LRRV + +
Sbjct: 122 RRVSELTALEVEDRRAL--LRIRCESGTYVRKLCHDLGRALGTGAHMGDLRRVGTTPFDD 179
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
D +V+MHD+ DA D+ D A L + P E LT R+ + + + + GA +
Sbjct: 180 AD-LVSMHDLTDALAFADD-GDPATLLDTVQPAERALTHLPRVEIAPSAAHEVAEGAPIY 237
Query: 330 IPGLLRFENDIEVGEE--VVLMTTKGEAVALG 359
PG+L ++ + +E V T G A+ LG
Sbjct: 238 APGVLGTDDLPDDADEPLVACYTPDGAAICLG 269
>gi|448350214|ref|ZP_21539033.1| H/ACA RNA-protein complex component Cbf5p [Natrialba taiwanensis
DSM 12281]
gi|445637721|gb|ELY90869.1| H/ACA RNA-protein complex component Cbf5p [Natrialba taiwanensis
DSM 12281]
Length = 308
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 160/309 (51%), Gaps = 24/309 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL-----------RVEKTGHSGTLDP 139
P R + + +G++NLDKP PSSH+V W++ + +++ H+GTLDP
Sbjct: 9 PADRSPAELLTFGVVNLDKPPGPSSHQVSGWLRDAVAETLAERDTGETIDQAAHAGTLDP 68
Query: 140 KVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPL 199
KVTG L + ATRL + KEYV V H +P AK L G ++Q+PP
Sbjct: 69 KVTGCLPTMLGEATRLAQVFLEGEKEYVAVLECHGTIPTDAK--SILAEFEGPIYQKPPR 126
Query: 200 ISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL 259
SAV R+LR+R IY+ +LE D R L+ I CE+GTYVR +C LGL LG GGHM L
Sbjct: 127 KSAVSRRLRVREIYDLDVLERD-GRQLL-LRIRCESGTYVRKLCHDLGLALGTGGHMGHL 184
Query: 260 RRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTV 319
RR + + D + T + +DA + D LR V+ P E +L RL + D+
Sbjct: 185 RRTATTPFDDTD-LYTATEFLDALAFWIEDADPEPLRAVVDPAERILEGIPRLTIADSAA 243
Query: 320 NAICYGAKLMIPGLLRFE---NDIEVGEEVV-LMTTKGEAVALGIAEMTTAVMATCDHGV 375
+ GA + PG+L +D+ +V T G AV LG E+ AT GV
Sbjct: 244 REVANGAPVYAPGVLDSNVSPDDLSTDRPLVACYTPNGAAVCLG--ELVGDPEAT--SGV 299
Query: 376 VARIKRVVM 384
V ++RV++
Sbjct: 300 VVDLERVLV 308
>gi|10640590|emb|CAC12368.1| dyskerin (nucleolar protein Nap57) related protein [Thermoplasma
acidophilum]
Length = 355
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 145/259 (55%), Gaps = 5/259 (1%)
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP P+SH+V W++ IL +EK H GTLDP VTG L + I +A RLV + KEY
Sbjct: 2 LDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDVVHESPKEY 61
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
V V R ++ + + +V + TG ++Q PP+ SAV R LRI+T+Y LLE DR L
Sbjct: 62 VGVMRFYEDITE-EEVRYYFKKFTGRIYQLPPVRSAVARSLRIKTVYSLDLLEKK-DR-L 118
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
V+F + CE+GTY+RT+C +G + G GG M +LRR +G E D +T+ D L
Sbjct: 119 VLFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRTSTGPFSE-DRCITLQDFAAMVELA 177
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
D+ LR I+ + Y ++VVK + + I +G+ L G+ + GE V
Sbjct: 178 RKGEDKL-LRDHILDMTYAFKDYPKIVVKRSAMRNIAHGSDLYAGGIKIIDGKFRKGERV 236
Query: 347 VLMTTKGEAVALGIAEMTT 365
+++ + V GIA ++
Sbjct: 237 AVISEDNDLVGTGIAMCSS 255
>gi|435848714|ref|YP_007310964.1| tRNA pseudouridine synthase B [Natronococcus occultus SP4]
gi|433674982|gb|AGB39174.1| tRNA pseudouridine synthase B [Natronococcus occultus SP4]
Length = 300
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 153/281 (54%), Gaps = 20/281 (7%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR----------VEKTGHSGTLDPK 140
P +R + +R+G++NLDKP PSSH+V W++ + +++ H+GTLDPK
Sbjct: 7 PEERSPAELLRFGVVNLDKPPGPSSHQVSGWLRDEVADALAERGAEPIDQAAHAGTLDPK 66
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLI 200
VTG L V + ATRL ++ KEYV V H VP+ A A G ++Q+PP
Sbjct: 67 VTGCLPVMLGDATRLAQTFLEGDKEYVAVLECHGSVPEDADSIVA--EFEGPIYQKPPRK 124
Query: 201 SAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 260
SAV R+LR R IY +LE + DR L++ I CE+GTYVR +C LGL LG G HM LR
Sbjct: 125 SAVSRRLRTREIYALDVLEAE-DRRLLL-RIRCESGTYVRKLCHDLGLALGTGAHMGHLR 182
Query: 261 RVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTT 318
R + ++ ++ T + DA WL D+ D L ++ P E +L ++V+ ++
Sbjct: 183 RTATTPF-DDTSLHTAQEFYDALAFWLEDD--DPEPLFEIVDPAERILEGIPQVVIAESA 239
Query: 319 VNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+ GA + PG+L +D E G V T G AV LG
Sbjct: 240 AEQVATGAPVYAPGVLE-ADDAERGSLVACTTPDGAAVCLG 279
>gi|448358841|ref|ZP_21547515.1| H/ACA RNA-protein complex component Cbf5p [Natrialba chahannaoensis
JCM 10990]
gi|445644521|gb|ELY97534.1| H/ACA RNA-protein complex component Cbf5p [Natrialba chahannaoensis
JCM 10990]
Length = 318
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 153/295 (51%), Gaps = 32/295 (10%)
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL---------------------RV 128
+P R + +++G++NLDKP PSSH+V W++ + +
Sbjct: 10 APGDRTPAELLQFGVVNLDKPPGPSSHQVSGWLRDAVADALAEADHGGDSDSDNDTTPTI 69
Query: 129 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEA 188
++ H+GTLDPKVTG L + ATRL + KEYV V H +P + V +
Sbjct: 70 DQAAHAGTLDPKVTGCLPTMLGDATRLAQVFLEGHKEYVAVLECHGSIP--SDVKSTIAE 127
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
G ++Q+PP SAV R+LR+R IY+ ++LE DR L+ + CE+GTYVR +C LGL
Sbjct: 128 FEGPIYQKPPRKSAVSRRLRVREIYDLEILEQG-DRQLL-LRMRCESGTYVRKLCHDLGL 185
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLL 306
LG GGHM LRR + + D + T + +DA WL D+ D + L ++ P E +L
Sbjct: 186 ALGTGGHMGHLRRTATSPFDDTD-LYTATEFLDALAFWLEDD--DPSLLYDIVDPAERIL 242
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFEND--IEVGEEVVLMTTKGEAVALG 359
RLV+ T + GA + PG+ D +E G+ V T G AV LG
Sbjct: 243 EEIPRLVIDSTAAREVAEGAPVYAPGVREVVADTALERGDLVACYTQVGSAVCLG 297
>gi|330833923|ref|YP_004408651.1| pseudouridine synthase subunit B [Metallosphaera cuprina Ar-4]
gi|329566062|gb|AEB94167.1| pseudouridine synthase (b subunit) [Metallosphaera cuprina Ar-4]
Length = 219
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 140/218 (64%), Gaps = 12/218 (5%)
Query: 176 VPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEA 235
+ DVAK G ++Q+PP+ S+VKR++R R +Y +LE +D+ V+ IS E
Sbjct: 12 IMDVAK------TFIGKIYQKPPVRSSVKRRVRKREVYSIDVLE--IDKRKVLMRISSEP 63
Query: 236 GTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYL 295
GTY+R +C +G++L G HM+ELRRVRSGI E D +VT+ V +A +LY N +E L
Sbjct: 64 GTYMRKICHDMGILLNCGAHMRELRRVRSGIFKE-DTLVTLQQVSEALYLYRNCGEEEEL 122
Query: 296 RRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEA 355
R+++MP+E+ +++V D TVN+I YG+ LM PG++ ++ D + G+ V L+T KGE
Sbjct: 123 RKILMPMEIAFCGVPKIIVDDETVNSISYGSPLMAPGIIAYQ-DFKKGDYVGLITWKGEG 181
Query: 356 VALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
+A+G A + + + G V + +RV+MD+D YP+ W
Sbjct: 182 IAIGKAVIDSKQLGK--KGEVVKTERVLMDKDIYPKAW 217
>gi|110668665|ref|YP_658476.1| H/ACA RNA-protein complex component Cbf5p [Haloquadratum walsbyi
DSM 16790]
gi|109626412|emb|CAJ52872.1| tRNA/rRNA pseudouridine synthase Cbf5 [Haloquadratum walsbyi DSM
16790]
Length = 339
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 151/312 (48%), Gaps = 45/312 (14%)
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCI 149
SP R L D +G++NLDKP PS+H+V AW++ ++ VE+ H+GTLDPKVTG L + +
Sbjct: 10 SPDNRSLADICNFGVVNLDKPVGPSAHQVSAWVRDLIGVERAAHAGTLDPKVTGCLPILL 69
Query: 150 DRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
ATRL KEY+ V H P + ++ +E G ++Q+PP SAV R+LR
Sbjct: 70 GEATRLAPVFLEGTKEYLAVLEFHGPPP--SDLSMIIETFEGTIYQKPPRKSAVSRRLRK 127
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
RTI +LE D D + I CE+GTY+R +C LGL G G HM +LRR + +
Sbjct: 128 RTIETLDILEVDSDAQQALLRIRCESGTYIRKLCHDLGLAAGTGAHMGDLRRTGTTPFSD 187
Query: 270 NDNMVTMHDVMDA------------QWLYDNYRDEA------------------------ 293
N+++ D+ DA Q ++ D++
Sbjct: 188 T-NLISTADLTDAVVFTLEEIVRANQTQINDAPDDSTAAYSLLHKINTANIDPNSTSPTD 246
Query: 294 YLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE------NDIEVGEEVV 347
+LR VI P E L +++ + + GA + PG++ F+ +DI V
Sbjct: 247 HLRNVISPAERALQHLPTVIIAPSAAAEVAMGAPVYAPGVIEFDSAAGNTHDITDSALVS 306
Query: 348 LMTTKGEAVALG 359
T AV LG
Sbjct: 307 CHTPDETAVCLG 318
>gi|448415661|ref|ZP_21578316.1| H/ACA RNA-protein complex component Cbf5p [Halosarcina pallida JCM
14848]
gi|445680362|gb|ELZ32809.1| H/ACA RNA-protein complex component Cbf5p [Halosarcina pallida JCM
14848]
Length = 290
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 148/271 (54%), Gaps = 11/271 (4%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P R L + +G++NLDKP PS+H+V AW++ + VE+ H+GTLDPKVTG L +
Sbjct: 8 PDDRSLEALLSFGVVNLDKPPGPSAHQVAAWVRDMTGVERAAHAGTLDPKVTGCLPTLLG 67
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
ATR+ + KEYV V LH P D+ V E G V+Q+PP SAV R+LR
Sbjct: 68 DATRMAQVFLEGSKEYVSVLELHGSAPSDLEAVVAEFE---GEVYQKPPRKSAVSRRLRS 124
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
R +Y+ +LE DR + I CE+GTY+R +C +GL G G HM LRR + +
Sbjct: 125 REVYDLDVLEV-ADRQ-ALLRIRCESGTYIRKLCHDVGLAAGTGAHMGHLRRTATDPF-D 181
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
+ + +++D+ DA + DE+ LR V+ P E L+ + + + + GA +
Sbjct: 182 DSTLKSLYDLSDA-LAFAEEGDESVLREVVAPAERALSHLPHVTIAYSAAEQVAEGAPVY 240
Query: 330 IPGLLRFE-NDIEVGEEVVLMTTKGEAVALG 359
PG+ FE +D + G V +T AV LG
Sbjct: 241 APGV--FETDDADRGSLVACVTPDDAAVCLG 269
>gi|47157052|gb|AAT12405.1| centromere/microtubule binding protein-like protein [Antonospora
locustae]
Length = 156
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
GL+LGV HM++LRR+R+G E D+ VTMHD++DA +L + DE+ +R+V PLEVLL
Sbjct: 1 GLLLGVEAHMKDLRRIRTGHFTEYDS-VTMHDILDAIYLLNTRGDESVVRKVFQPLEVLL 59
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
YKR++VKD+ V A+C GA+L I G++++E +IE+G+E+VLMTTKGEAVAL A++++
Sbjct: 60 KGYKRIMVKDSCVGALCAGAQLTINGIVKYEKEIEIGDEIVLMTTKGEAVALAAAKISSV 119
Query: 367 VMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+ +HG+V + KRV+MD+ YP WG
Sbjct: 120 EIGILEHGIVCKTKRVIMDKGVYPETWGF 148
>gi|385804140|ref|YP_005840540.1| tRNA/rRNA pseudouridine synthase Cbf5 [Haloquadratum walsbyi C23]
gi|339729632|emb|CCC40906.1| tRNA/rRNA pseudouridine synthase Cbf5 [Haloquadratum walsbyi C23]
Length = 339
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 151/312 (48%), Gaps = 45/312 (14%)
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCI 149
SP R L D +G++NLDKP PS+H+V AW++ ++ VE+ H+GTLDPKVTG L + +
Sbjct: 10 SPDNRSLADICNFGVVNLDKPVGPSAHQVSAWVRDLIGVERAAHAGTLDPKVTGCLPILL 69
Query: 150 DRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRI 209
ATRL KEY+ V H P + ++ +E G ++Q+PP SAV R+LR
Sbjct: 70 GEATRLAPVFLEGIKEYLAVLEFHGPPP--SDLSMIIETFEGTIYQKPPRKSAVSRRLRK 127
Query: 210 RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGE 269
RTI +LE D D + I CE+GTY+R +C LGL G G HM +LRR + +
Sbjct: 128 RTIETLDILEVDSDAQQALLHIRCESGTYIRKLCHDLGLAAGTGAHMGDLRRTGTTPFSD 187
Query: 270 NDNMVTMHDVMDA------------QWLYDNYRDEA------------------------ 293
N+++ D+ DA Q ++ D++
Sbjct: 188 T-NLISTADLTDAVVFTLEEIARANQTQINDAPDDSTAAYSLLHKINTANIDPNSTSPTD 246
Query: 294 YLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFE------NDIEVGEEVV 347
+LR VI P E L +++ + + GA + PG++ F+ +DI V
Sbjct: 247 HLRNVISPAERALQHLPTVIIAPSAAAEVAMGAPVYAPGVIEFDSAAGNTHDITDSALVS 306
Query: 348 LMTTKGEAVALG 359
T AV LG
Sbjct: 307 CHTPDETAVCLG 318
>gi|448474342|ref|ZP_21602201.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum aidingense
JCM 13560]
gi|445817649|gb|EMA67518.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum aidingense
JCM 13560]
Length = 327
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 165/323 (51%), Gaps = 41/323 (12%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR------------VEKTGHSGTLD 138
P +R + + +R+G++N+DKPA PSSH++ AW++ + ++ H+GTLD
Sbjct: 17 PGERSVPELLRFGVVNVDKPAGPSSHQLSAWVRNAINETLAALDPDGEAIDGVAHAGTLD 76
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRP 197
PKVTG L ATR + GKEYV V LH P D VA EA ++Q+P
Sbjct: 77 PKVTGCLPTLTGDATRAAQVFLEGGKEYVSVLELHGPAPTDFRSVAAEFEA---EIYQKP 133
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P SAV R+LR RTI++ +LE + R L I CE+GTY+R +C +GL GVG HM
Sbjct: 134 PRKSAVTRRLRTRTIHDLDVLEVEERRAL--LRIGCESGTYIRKLCHDIGLATGVGAHMG 191
Query: 258 ELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + ++ ++ T+ D+ DA W D D+A LR V+ P E L + V
Sbjct: 192 HLRRTAT-VPFDDSDLHTLQDLFDALAWAEDG--DDALLREVVRPAEDALVHLPSVTVAP 248
Query: 317 TTVNAICYGAKLMIPGLL------------RFENDIEVGEEVVLM---TTKGEAVALGIA 361
+ + GA + PG++ R +D G++ L+ T G AV LG
Sbjct: 249 SAARNVATGAPVYAPGVIDVDTADFGDDADRNASDGADGDDAPLVACHTPDGAAVCLG-- 306
Query: 362 EMTTAVMATCDHGVVARIKRVVM 384
D GVV ++RV++
Sbjct: 307 --RLVGDPDADSGVVVSLERVLV 327
>gi|448485433|ref|ZP_21606658.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum arcis JCM
13916]
gi|445818087|gb|EMA67954.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum arcis JCM
13916]
Length = 326
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 159/299 (53%), Gaps = 35/299 (11%)
Query: 88 GYSPLKRP-----LVDYIRYGIINLDKPANPSSHEVVAWIKRIL---------RVEKTG- 132
G PL+ P + + +R+G++NLDKPA PSSH+V AW++ + TG
Sbjct: 15 GEGPLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDSEGPPTGG 74
Query: 133 --HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEAL 189
HSGTLDPKVTG L ATR+ + KEYV V +H P D V E+
Sbjct: 75 VAHSGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLEIHGSAPADFEDVVAEFES- 133
Query: 190 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
++Q+PP SAV R+LR RTI++ +LE D DR ++ I CE+GTYVR +C +GL
Sbjct: 134 --EIYQKPPRKSAVSRRLRTRTIHDLDVLEVD-DRQALI-RIRCESGTYVRKLCHDIGLA 189
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTS 308
GVG HM LRR + + D + T+ D++DA W D D+A LR V+ P E LT
Sbjct: 190 TGVGAHMGHLRRTATDPFDDRD-LHTLQDLVDALAWAEDG--DDALLREVVRPAEDALTH 246
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFEN-----DIEVGEE---VVLMTTKGEAVALG 359
+ V + ++ GA + PG++ ++ D + G++ V T G AV LG
Sbjct: 247 LPAVTVARSAARSVATGAPVYAPGVIDVDDAAARPDRDGGDDPPLVACFTPDGVAVCLG 305
>gi|315425877|dbj|BAJ47530.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
gi|315427735|dbj|BAJ49331.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
gi|343484692|dbj|BAJ50346.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 240
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 136/232 (58%), Gaps = 4/232 (1%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
GKEYV + LH V D K+ A + TG V+Q PP+ ++V R+ RIR +Y LLE D
Sbjct: 5 GGKEYVGLMELHGDVSD-DKLLEAFKIFTGDVYQVPPVRASVARRPRIRRVYYFDLLERD 63
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
R+ ++F I C GTYVR +C +GL LGVG HM+ELRR R+G L E N VT+ V +
Sbjct: 64 -GRY-ILFRIGCSGGTYVRKICHDMGLYLGVGAHMEELRRTRAGSL-EEKNSVTLLQVYE 120
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
A Y DE +R+V+ P+E L ++ + DT V+A+C+GA LM+ G+ ++D+
Sbjct: 121 AFEKYRETGDEEAVRKVVYPVEKCLELLPKVYILDTAVDAVCHGADLMVAGVSMIDSDVA 180
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
EV +MT K E VALG A M + G+ + RV+M + TYP W
Sbjct: 181 ENSEVAVMTLKNELVALGKAAMDAQSILEASEGMAVDVTRVIMHKSTYPPVW 232
>gi|433639033|ref|YP_007284793.1| rRNA pseudouridine synthase, putative [Halovivax ruber XH-70]
gi|433290837|gb|AGB16660.1| rRNA pseudouridine synthase, putative [Halovivax ruber XH-70]
Length = 309
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 152/293 (51%), Gaps = 35/293 (11%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL----------RVEKTGHSGTLDPK 140
P R + + +G++NLDKP PSSH+V AWI+ + + + H+GTLDPK
Sbjct: 7 PDDRSIASLLSFGVVNLDKPPGPSSHQVSAWIRDAVDDRLAEAGHDPIGRAAHAGTLDPK 66
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLI 200
VTG L V + ATRL + KEYV V H VP V L G ++Q+PP
Sbjct: 67 VTGCLPVMLGDATRLAQVFLEGAKEYVAVLECHGPVP--TDVESTLAEFEGPIYQKPPRK 124
Query: 201 SAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 260
SAV R+LR+R IY+ LE + DR V+ I CE+GTYVR +C LGL LG G HM +LR
Sbjct: 125 SAVSRRLRVREIYDIDALEIE-DRR-VLLRIRCESGTYVRKLCHDLGLALGTGAHMGDLR 182
Query: 261 RVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTT 318
R + + D +V+ D++DA W+ D+ D LR ++ P E +L+ + + +
Sbjct: 183 RTATDPFDDRD-LVSATDLIDALAFWIEDDEPDP--LRSMVDPAERILSDLPAVTIAENA 239
Query: 319 VNAICYGAKLMIPGLLRFENDIEVGEE------------VVLMTTKGEAVALG 359
+ GA + PG+L D++ G + V T G AV LG
Sbjct: 240 AAEVANGAPVYAPGVL----DVDSGRDGADGDSRTDAPLVACYTPNGSAVCLG 288
>gi|354610502|ref|ZP_09028458.1| tRNA pseudouridine synthase B [Halobacterium sp. DL1]
gi|353195322|gb|EHB60824.1| tRNA pseudouridine synthase B [Halobacterium sp. DL1]
Length = 296
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 131/242 (54%), Gaps = 12/242 (4%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+ +G++NLDKP PS+H+V AW++ + VEK H+GTLDPKVTG L + ATRL +
Sbjct: 15 LEFGVLNLDKPPGPSAHQVSAWVRDMTGVEKAAHAGTLDPKVTGCLPILTGAATRLAPAL 74
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
KEYV V LH P A + + G +Q+PP SAV R+LR+R IY+ +LE
Sbjct: 75 LEGPKEYVTVLELHADPP--ANLESVVAEFEGPTYQKPPRKSAVARRLRVREIYDLDVLE 132
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
V+ + I CE+GTYVR +C LG LG G HM LRR + + D +VT+ D+
Sbjct: 133 --VENRQALLRIRCESGTYVRKLCHDLGRALGTGAHMGHLRRTATTPFDDTD-LVTLQDL 189
Query: 280 MDAQWLYDNYRD-------EAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
DA Y + D E LR V+ P E L + + + + GA + PG
Sbjct: 190 SDALAWYRDEDDTDPPGSPEEALRAVVAPAERALGHLPSVTIAPSAAAEVAEGAPVYAPG 249
Query: 333 LL 334
+L
Sbjct: 250 VL 251
>gi|448352634|ref|ZP_21541415.1| H/ACA RNA-protein complex component Cbf5p [Natrialba hulunbeirensis
JCM 10989]
gi|445641913|gb|ELY94984.1| H/ACA RNA-protein complex component Cbf5p [Natrialba hulunbeirensis
JCM 10989]
Length = 326
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 167/328 (50%), Gaps = 44/328 (13%)
Query: 90 SPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL----------------------- 126
+P R + +++G++NLDKP PSSH+V W++ +
Sbjct: 10 APGDRTPAELLQFGVVNLDKPPGPSSHQVSGWLRDAVVDALAEADSDGDGDSDSNSDSDS 69
Query: 127 ------RVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
+++ H+GTLDPKVTG L + ATRL + KEYV V H +P A
Sbjct: 70 DDDTTPTIDQAAHAGTLDPKVTGCLPTMLGDATRLAQVFLEGHKEYVAVLECHGSIP--A 127
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
A + G ++Q+PP SAV R+LR+R +Y+ ++LE DR L+ I CE+GTYVR
Sbjct: 128 DAASTVAEFEGPIYQKPPRKSAVSRRLRVREMYDLEVLEAG-DRQLL-LRIRCESGTYVR 185
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRV 298
+C LGL LG GGHM LRR + + D + T + +DA WL D+ D + L +
Sbjct: 186 KLCHDLGLALGTGGHMGHLRRTATSPFDDTD-LYTATEFLDALSFWLEDD--DPSLLYDI 242
Query: 299 IMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGL--LRFENDIEVGEEVVLMTTKGEAV 356
+ P E +L R+++ T + GA + PG+ + E +E G+ V T G AV
Sbjct: 243 VEPAERILEDVPRVIIDSTAAREVATGAPVYAPGVQEVDAETVLERGDLVACYTQVGSAV 302
Query: 357 ALGIAEMTTAVMATCDHGVVARIKRVVM 384
LG E+ A + GVV ++RV++
Sbjct: 303 CLG--ELVGDPDA--ESGVVVDLERVLV 326
>gi|448491321|ref|ZP_21608262.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum
californiensis DSM 19288]
gi|445693092|gb|ELZ45254.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum
californiensis DSM 19288]
Length = 338
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 147/272 (54%), Gaps = 27/272 (9%)
Query: 86 PNGYSPLKRP-----LVDYIRYGIINLDKPANPSSHEVVAWIKRIL---------RVEKT 131
P+G SPL+ P + + +R+G++NLDKPA PSSH+V AW++ + + T
Sbjct: 13 PDGESPLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDPEGQPT 72
Query: 132 G---HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALE 187
G HSGTLDPKVTG L ATR+ + KEYV V LH P D V A E
Sbjct: 73 GGVAHSGTLDPKVTGCLPTLTGDATRMAQVFLEGAKEYVAVLELHGSPPTDFRDVVAAFE 132
Query: 188 ALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
+ ++Q+PP SAV R+LR RTI+ +LE DR + I CE+GTYVR +C +G
Sbjct: 133 S---EIYQKPPRKSAVSRRLRTRTIHHLDVLEV-ADRR-ALLRIRCESGTYVRKLCHDIG 187
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLL 306
L GVG HM LRR + + D + + D++DA W D D+A LR V+ P E L
Sbjct: 188 LATGVGAHMGHLRRTATDPFDDRD-LRMLQDLVDALAWAEDG--DDALLRDVVRPAEDAL 244
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
T + V + + GA + PG++ ++
Sbjct: 245 THLPAVTVARSAARNVATGAPVYAPGVIDVDD 276
>gi|385805535|ref|YP_005841933.1| H/ACA RNA-protein complex component Cbf5p [Fervidicoccus fontis
Kam940]
gi|383795398|gb|AFH42481.1| H/ACA RNA-protein complex component Cbf5p [Fervidicoccus fontis
Kam940]
Length = 236
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 147/231 (63%), Gaps = 6/231 (2%)
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVCV LHD+V + ++ R +E G ++QRPP+ S VKR++RIR I++ +LLE +
Sbjct: 9 KEYVCVMELHDEVNN-EELKRVIEMFKGRIYQRPPVRSNVKRRIRIRKIHDIELLERKGN 67
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
V+ I C+AGTY+R +C +GL+LGVG HM+ELRR SG E D+ V M ++ +A
Sbjct: 68 H--VLMRIKCDAGTYMRKLCHDIGLLLGVGAHMRELRRTVSGPFTE-DHAVRMQELSEAI 124
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
+L+ NY +++ LR++I+P+E+ +++VKD+ ++++ YGA L G+ + D++
Sbjct: 125 YLWKNYGNDSALRKMILPVELSTCILPKILVKDSAISSLLYGAPLAKGGVAAYSEDLQTN 184
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWG 394
+ + T+K E + GI E+ + VV R V+M+R++YP+ WG
Sbjct: 185 KIAAVFTSKIELI--GIYEILNNPKKNKNGKVVGRPLAVIMERNSYPKNWG 233
>gi|448377694|ref|ZP_21560390.1| H/ACA RNA-protein complex component Cbf5p [Halovivax asiaticus JCM
14624]
gi|445655638|gb|ELZ08483.1| H/ACA RNA-protein complex component Cbf5p [Halovivax asiaticus JCM
14624]
Length = 312
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 154/293 (52%), Gaps = 32/293 (10%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL--RVEKTGH--------SGTLDPK 140
P R + + +G++NLDKP+ PSSH+V AWI+ + R+ + GH +GTLDPK
Sbjct: 7 PDDRSIASLLSFGVVNLDKPSGPSSHQVSAWIRDAVDDRLAEAGHDPIGRAAHAGTLDPK 66
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLI 200
VTG L V + ATRL + KEY+ V H VP V L G ++Q+PP
Sbjct: 67 VTGCLPVMLGDATRLAQVFLEGAKEYIAVLECHGPVP--TDVESTLAEFEGPIYQKPPRK 124
Query: 201 SAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 260
SAV R+LR+R IY+ LE + DR V+ I CE+GTYVR +C LGL LG G HM +LR
Sbjct: 125 SAVSRRLRVREIYDIDALEIE-DRR-VLLRIRCESGTYVRKLCHDLGLALGTGAHMGDLR 182
Query: 261 RVRSGILGENDNMVTMHDVMDAQ--WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTT 318
R + + D +V D++DA W+ D+ D LR ++ P E +L+ + + +
Sbjct: 183 RTATDPFDDRD-LVNATDLIDALAFWIEDDDTDP--LRSMVDPAERILSDLPAVTIAENA 239
Query: 319 VNAICYGAKLMIPGLLRFENDIEVGEE------------VVLMTTKGEAVALG 359
+ GA + PG+L + ++ G + V T G AV LG
Sbjct: 240 AAEVANGAPVYAPGVLDVDG-VDSGRDGADGDGPADTPLVACYTPNGSAVCLG 291
>gi|448499272|ref|ZP_21611286.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum coriense DSM
10284]
gi|445697609|gb|ELZ49671.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum coriense DSM
10284]
Length = 329
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 141/262 (53%), Gaps = 22/262 (8%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL---------RVEKTG---HSGTLD 138
P +R + + +R+G++NLDKPA PSSH+V AW++ + TG HSGTLD
Sbjct: 18 PGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDPEGPPTGGVAHSGTLD 77
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRP 197
PKVTG L ATR+ + KEYV V LH P D +V E G ++Q+P
Sbjct: 78 PKVTGCLPTLTGDATRMAQVFLEGAKEYVAVLELHGPPPSDFREVVAEFE---GPIYQKP 134
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P SAV R+LR RTI+E LLE DR + I CE+GTYVR +C +GL G+G HM
Sbjct: 135 PRKSAVSRRLRTRTIHELDLLEV-ADRR-ALLRIRCESGTYVRKLCHDIGLAAGIGAHMG 192
Query: 258 ELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + D + + D++DA W D DE LR V+ P E LT + V
Sbjct: 193 HLRRSATDPFDDRD-LDALQDLVDALAWAEDG--DEEALREVVRPAEDALTHLPAVTVAR 249
Query: 317 TTVNAICYGAKLMIPGLLRFEN 338
+ + GA + PG+L ++
Sbjct: 250 SAARNVATGAPVYAPGVLDVDD 271
>gi|448427649|ref|ZP_21583964.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum terrestre JCM
10247]
gi|445678336|gb|ELZ30830.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum terrestre JCM
10247]
Length = 326
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 156/299 (52%), Gaps = 35/299 (11%)
Query: 88 GYSPLKRP-----LVDYIRYGIINLDKPANPSSHEVVAWIK-----RILRVEKTG----- 132
G PL+ P + + +R+G++NLDKPA PSSH+V AW++ + ++ G
Sbjct: 15 GEGPLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDSEGPPTGG 74
Query: 133 --HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEAL 189
HSGTLDPKVTG L ATR+ + KEYV V LH P D V E+
Sbjct: 75 VAHSGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLELHGSPPADFRDVVAEFES- 133
Query: 190 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
++Q+PP SAV R+LR RTI++ +LE D DR ++ I CE+GTY+R +C +GL
Sbjct: 134 --EIYQKPPRKSAVSRRLRTRTIHDLDVLEVD-DRQALI-RIRCESGTYIRKLCHDIGLA 189
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTS 308
GVG HM LRR + + D + T+ D++DA W D D+A LR V+ P E LT
Sbjct: 190 TGVGAHMGHLRRTATDPFDDRD-LHTLQDLVDALAWAEDG--DDALLREVVRPAEDALTH 246
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE--------VVLMTTKGEAVALG 359
+ V + ++ GA + PG++ ++ + V T G AV LG
Sbjct: 247 LPAVTVARSAARSVATGAPVYAPGVIDVDDAAARPDRDGDDDPPLVACFTPDGVAVCLG 305
>gi|448453323|ref|ZP_21593766.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum litoreum JCM
13561]
gi|445807643|gb|EMA57726.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum litoreum JCM
13561]
Length = 326
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 155/299 (51%), Gaps = 35/299 (11%)
Query: 88 GYSPLKRP-----LVDYIRYGIINLDKPANPSSHEVVAWIK-----RILRVEKTG----- 132
G PL+ P + + +R+G++NLDKPA PSSH+V AW++ + ++ G
Sbjct: 15 GEGPLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDSEGPPTGG 74
Query: 133 --HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEAL 189
HSGTLDPKVTG L ATR+ + KEYV V +H P D V E+
Sbjct: 75 VAHSGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLEIHGSTPADFEDVVAEFES- 133
Query: 190 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
++Q+PP SAV R+LR RTI++ +LE D DR ++ I CE+GTYVR +C +GL
Sbjct: 134 --EIYQKPPRKSAVSRRLRTRTIHDLDVLEVD-DRQALI-RIRCESGTYVRKLCHDIGLA 189
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTS 308
GVG HM LRR + + D + T+ D++DA W D D+ LR V+ P E LT
Sbjct: 190 TGVGAHMGHLRRTATDPFDDRD-LHTLQDLVDALAWAEDG--DDTLLREVVRPAEDALTH 246
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE--------VVLMTTKGEAVALG 359
+ V + ++ GA + PG++ ++ + V T G AV LG
Sbjct: 247 LPAVTVARSAARSVATGAPVYAPGVIDVDDAAARPDRDGDDDPPLVACFTPDGVAVCLG 305
>gi|448534361|ref|ZP_21621689.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum hochstenium
ATCC 700873]
gi|445704843|gb|ELZ56750.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum hochstenium
ATCC 700873]
Length = 347
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 146/271 (53%), Gaps = 27/271 (9%)
Query: 87 NGYSPLKRP-----LVDYIRYGIINLDKPANPSSHEVVAWIKRIL---------RVEKTG 132
+G PL+ P + + +R+G++NLDKPA PSSH+V AWI+ + TG
Sbjct: 29 SGDDPLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWIRDAIDETLAALDPEGPPTG 88
Query: 133 ---HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEA 188
HSGTLDPKVTG L ATR+ + KEYV V LH P D +V E+
Sbjct: 89 GVAHSGTLDPKVTGCLPTLTGDATRMAQVFLEGAKEYVAVLELHGSPPADFREVVAEFES 148
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
++Q+PP SAV R+LR RT+++ +LE DR ++ + CE+GTYVR +C LGL
Sbjct: 149 ---EIYQKPPRKSAVSRRLRTRTVHDLDVLEV-ADRKALI-RVRCESGTYVRKLCHDLGL 203
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLT 307
GVG HM LRR + + D + T+ D++DA W D D+A LR V+ P E L
Sbjct: 204 ATGVGAHMGHLRRTATDPFDDRD-LRTLQDLVDALAWAEDG--DDALLRDVVRPAEDALA 260
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
+ V + + GA + PG++ ++
Sbjct: 261 HLPAVTVARSAARNVATGAPVYAPGVIDVDD 291
>gi|452208085|ref|YP_007488207.1| tRNA/rRNA pseudouridine synthase Cbf5 [Natronomonas moolapensis
8.8.11]
gi|452084185|emb|CCQ37520.1| tRNA/rRNA pseudouridine synthase Cbf5 [Natronomonas moolapensis
8.8.11]
Length = 292
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 141/271 (52%), Gaps = 8/271 (2%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P +R + +G++NLDKP PS+H+V AW++ + V++ H+GTLDPKVTG L +
Sbjct: 7 PAERDPATLLEFGVVNLDKPPGPSAHQVAAWVRDMAGVDRAAHAGTLDPKVTGCLPILTG 66
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIR 210
ATR + + K YV V H ++P A L A A++Q+PP SAV R+LR R
Sbjct: 67 TATRAAQVFDDSRKGYVAVLEAHGRLP--ADFESTLSAFETALYQKPPRKSAVVRRLRTR 124
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGEN 270
I+ + LE + R L+ I C +GTY+R +C LGL LG G HM +LRR ++ G
Sbjct: 125 EIHRLEALEREERRALLD--IECASGTYIRKLCHDLGLALGTGAHMGDLRRTKTA--GFT 180
Query: 271 D-NMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLM 329
D + TM D+ D + D L V+ P E L + V + + GA +
Sbjct: 181 DATLSTMEDLADGLAFWRESDDADLLCEVVSPAERALEGLPTVTVAPSAAREVAEGAPVY 240
Query: 330 IPGLLRFE-NDIEVGEEVVLMTTKGEAVALG 359
PG++ + G+ V T G AV LG
Sbjct: 241 APGVIDAGLAGADPGDLVACYTPDGAAVCLG 271
>gi|448504662|ref|ZP_21614003.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum distributum
JCM 9100]
gi|448519103|ref|ZP_21617879.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum distributum
JCM 10118]
gi|445701872|gb|ELZ53844.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum distributum
JCM 9100]
gi|445704119|gb|ELZ56037.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum distributum
JCM 10118]
Length = 326
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 144/266 (54%), Gaps = 27/266 (10%)
Query: 88 GYSPLKRP-----LVDYIRYGIINLDKPANPSSHEVVAWIKRIL---------RVEKTG- 132
G PL+ P + + +R+G++NLDKPA PSSH+V AW++ + TG
Sbjct: 15 GEGPLRAPPGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDPEGPPTGG 74
Query: 133 --HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEAL 189
HSGTLDPKVTG L ATR+ + KEYV V +H P D V E+
Sbjct: 75 VAHSGTLDPKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLEIHGSAPADFEDVVAEFES- 133
Query: 190 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
++Q+PP SAV R+LR RTI++ +LE D DR ++ I CE+GTYVR +C +GL
Sbjct: 134 --EIYQKPPRKSAVSRRLRTRTIHDLDVLEVD-DRQALI-RIRCESGTYVRKLCHDIGLA 189
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTS 308
GVG HM LRR + + D + T+ D++DA W D D+ LR V+ P E LT
Sbjct: 190 TGVGAHMGHLRRTATDPFDDRD-LHTLQDLVDALAWAEDG--DDTLLREVVRPAEDALTH 246
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLL 334
+ V + ++ GA + PG++
Sbjct: 247 LPAVTVARSAARSVATGAPVYAPGVI 272
>gi|448431202|ref|ZP_21584973.1| H/ACA RNA-protein complex component Cbf5p, partial [Halorubrum
tebenquichense DSM 14210]
gi|445688138|gb|ELZ40405.1| H/ACA RNA-protein complex component Cbf5p, partial [Halorubrum
tebenquichense DSM 14210]
Length = 335
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 143/262 (54%), Gaps = 22/262 (8%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL---------RVEKTG---HSGTLD 138
P +R + + +R+G++NLDKPA PSSH+V AW++ + TG HSGTLD
Sbjct: 26 PGERSVPELLRFGVVNLDKPAGPSSHQVSAWVRDAIDETLAALDPEGPPTGGVAHSGTLD 85
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRP 197
PKVTG L ATR+ + KEYV V LH P D +V E+ ++Q+P
Sbjct: 86 PKVTGCLPTLTGDATRMAQVFLEGTKEYVAVLELHGSPPADFREVVAEFES---EIYQKP 142
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P SAV R+LR RT+++ +L DV + I CE+GTYVR +C +GL GVG HM
Sbjct: 143 PRKSAVSRRLRTRTVHDLDVL--DVADRKALLRIRCESGTYVRKLCHDVGLATGVGAHMG 200
Query: 258 ELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + D + T+ D++DA W D DEA+LR V+ P E LT + V
Sbjct: 201 HLRRTATDPFDDRD-LRTLQDLVDALAWAEDG--DEAFLRDVVRPAEDALTHLPAVTVAR 257
Query: 317 TTVNAICYGAKLMIPGLLRFEN 338
+ + GA + PG++ ++
Sbjct: 258 SAARNVATGAPVYAPGVIDVDD 279
>gi|242072544|ref|XP_002446208.1| hypothetical protein SORBIDRAFT_06g004121 [Sorghum bicolor]
gi|241937391|gb|EES10536.1| hypothetical protein SORBIDRAFT_06g004121 [Sorghum bicolor]
Length = 96
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 81/93 (87%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+RYG+INLDKP+N S+H+VVAWIKRILR EKTGHSGT DPKVTGNLIV +DR TRL+K Q
Sbjct: 2 LRYGVINLDKPSNSSTHKVVAWIKRILRAEKTGHSGTFDPKVTGNLIVYVDRTTRLIKLQ 61
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGA 192
QGAGKEYVCVAR H VPD +VARALE LTG+
Sbjct: 62 QGAGKEYVCVARFHAVVPDTERVARALEVLTGS 94
>gi|448440151|ref|ZP_21588399.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum saccharovorum
DSM 1137]
gi|445690668|gb|ELZ42878.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum saccharovorum
DSM 1137]
Length = 333
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 147/293 (50%), Gaps = 32/293 (10%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR------------VEKTGHSGTLD 138
P R + + +R+G++N+DKPA PSSH++ AW++ + ++ H+GTLD
Sbjct: 28 PEARSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAINESLATLDPDGPPIDGVAHAGTLD 87
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRP 197
PKVTG L ATR + KEYV V LH P D V EA ++Q+P
Sbjct: 88 PKVTGCLPTLTGDATRAAQVFLEGSKEYVSVVELHGSPPADFRDVVAEFEA---EIYQKP 144
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P SAV R+LR RTI++ +LE D DR + I CE+GTYVR +C +GL GVG HM
Sbjct: 145 PRKSAVTRRLRTRTIHDLDVLEVD-DRQ-ALLRIRCESGTYVRKLCHDIGLATGVGAHMG 202
Query: 258 ELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + D + + D++DA W + D+ LR V+ P E L + +
Sbjct: 203 HLRRTATDPFDDRD-LRPLQDLVDALAWAEEG--DDTLLREVVRPAEDALVHLPSVTIAP 259
Query: 317 TTVNAICYGAKLMIPGLLRFENDIEVGEE----------VVLMTTKGEAVALG 359
+ + GA + PG++ + + G E V T G AV LG
Sbjct: 260 SAARNVATGAPVYAPGVIDADPTPDEGGEDDDAGRGPPLVACHTPDGAAVCLG 312
>gi|448465610|ref|ZP_21598876.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum kocurii JCM
14978]
gi|445814942|gb|EMA64890.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum kocurii JCM
14978]
Length = 330
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 141/267 (52%), Gaps = 22/267 (8%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRIL------------RVEKTGHSGTLD 138
P +R + + +R+G++N+DKPA PSSH++ AW++ + ++ H+GTLD
Sbjct: 26 PGERSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAVNETLATLDPDGPQIAGVAHAGTLD 85
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRP 197
PKVTG L ATR + GKEYV V LH P D V EA ++Q+P
Sbjct: 86 PKVTGCLPTLTGDATRAAQVFLEGGKEYVSVLELHGSPPADFRDVVAEFEA---EIYQKP 142
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P SAV R+LR RTI+ +LE D DR + I CE+GTYVR +C +GL GVG HM
Sbjct: 143 PRKSAVTRRLRTRTIHALDVLEVD-DRQ-ALLRIRCESGTYVRKLCHDIGLATGVGAHMG 200
Query: 258 ELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + D + + D++DA W + DE+ LR V+ P E + +
Sbjct: 201 HLRRTATDPFDDRD-LHPLQDLVDALAWAEEG--DESLLREVVRPAEDAFVHLPSVTIAP 257
Query: 317 TTVNAICYGAKLMIPGLLRFENDIEVG 343
+ + GA + PG++ ++ E G
Sbjct: 258 SAARNVATGAPVYAPGVIDADSAAETG 284
>gi|222480224|ref|YP_002566461.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum lacusprofundi
ATCC 49239]
gi|222453126|gb|ACM57391.1| pseudouridylate synthase TruB domain protein [Halorubrum
lacusprofundi ATCC 49239]
Length = 343
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 139/262 (53%), Gaps = 22/262 (8%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR------------VEKTGHSGTLD 138
P +R + + +R+G++N+DKPA PSSH++ AW++ + + H+GTLD
Sbjct: 36 PDQRSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAINETLATLDPDGSPIHGVAHAGTLD 95
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRP 197
PKVTG L ATR + KEYV V LH P D V EA ++Q+P
Sbjct: 96 PKVTGCLPTLTGDATRAAQVFLEGSKEYVSVLELHGSPPADFRDVVAEFEA---EIYQKP 152
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P SAV R+LR RTIY+ +LE D DR + I CE+GTY+R +C +GL GVG HM
Sbjct: 153 PRKSAVTRRLRTRTIYDLDVLEVD-DRQ-ALLRIRCESGTYIRKLCHDIGLATGVGAHMG 210
Query: 258 ELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + D + + D++D W + D+A+LR V+ P E L + +
Sbjct: 211 HLRRTATDPFDDRD-LHPLQDLVDGLTWAEEG--DDAFLREVVRPAEDALVHLPSVTIAP 267
Query: 317 TTVNAICYGAKLMIPGLLRFEN 338
+ + GA + PG++ ++
Sbjct: 268 SAARNVATGAPVYAPGVIDVDS 289
>gi|448460436|ref|ZP_21597261.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum lipolyticum
DSM 21995]
gi|445807177|gb|EMA57263.1| H/ACA RNA-protein complex component Cbf5p [Halorubrum lipolyticum
DSM 21995]
Length = 325
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 146/296 (49%), Gaps = 38/296 (12%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILR------------VEKTGHSGTLD 138
P +R + + +R+G++N+DKPA PSSH++ AW++ + + H+GTLD
Sbjct: 20 PGERSVPELLRFGVVNVDKPAGPSSHQLSAWVRDAINDTLAALDPDGPPIAGVAHAGTLD 79
Query: 139 PKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRP 197
PKVTG L ATR + KEYV V LH P D V EA ++Q+P
Sbjct: 80 PKVTGCLPTLTGDATRAAQVFLEGSKEYVSVLELHGSPPADFRDVVAEFEA---EIYQKP 136
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P SAV R+LR RTI++ LLE VD + I CE+GTYVR +C +GL GVG HM
Sbjct: 137 PRKSAVTRRLRTRTIHDLDLLE--VDDWQALLRIRCESGTYVRKLCHDIGLATGVGAHMG 194
Query: 258 ELRRVRSGILGENDNMVTMHDVMDA-QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKD 316
LRR + + D + + D++D W D DEA LR V+ P E L + +
Sbjct: 195 HLRRTTTDPFDDGD-LHPLQDLVDGLAWAEDG--DEASLREVVRPAEDALVHLPSVTIAP 251
Query: 317 TTVNAICYGAKLMIPGLLRFENDIEVGEE-------------VVLMTTKGEAVALG 359
+ + GA + PG++ + VG + V T G AV LG
Sbjct: 252 SAARNVATGAPVYAPGVIDADG---VGADESPGRNGDGDPPLVACHTPDGAAVCLG 304
>gi|374633199|ref|ZP_09705566.1| rRNA pseudouridine synthase, putative [Metallosphaera
yellowstonensis MK1]
gi|373524683|gb|EHP69560.1| rRNA pseudouridine synthase, putative [Metallosphaera
yellowstonensis MK1]
Length = 233
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 147/232 (63%), Gaps = 7/232 (3%)
Query: 162 AGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD 221
+GKEYVC+ +H + +++ + G ++Q+PP+ S+VKR++R R + E ++LE +
Sbjct: 7 SGKEYVCLMEIHCDFKE-SELKDVVSQFKGVIYQKPPVRSSVKRRVRKRKVDELEVLEIE 65
Query: 222 VDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
R V+ IS E GTY+R +C +G++LG G HM+ELRR RSG+ E D+ VT+H + +
Sbjct: 66 GRR--VLLRISSEPGTYMRKLCHDIGVVLGCGAHMRELRRTRSGVFVERDS-VTLHRLSE 122
Query: 282 AQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIE 341
A +LY +D+ LR+++ P+EV +++V D VN+I YGA+LM PG++ + +
Sbjct: 123 ALYLYRECKDDTELRKILYPMEVAFCGIPKIIVDDEAVNSIAYGAQLMAPGIVAHQ-EFR 181
Query: 342 VGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
G+ V L+T KGE +A+G A + + G VA+ RV+MD+D YP+ W
Sbjct: 182 RGDTVALITWKGEGIAIGKALTDSDKIGK--KGEVAKPDRVLMDKDVYPKAW 231
>gi|154337332|ref|XP_001564899.1| putative centromere/microtubule binding protein cbf5, partial
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061937|emb|CAM38978.1| putative centromere/microtubule binding protein cbf5, partial
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 95
Score = 153 bits (386), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/95 (70%), Positives = 84/95 (88%)
Query: 75 LNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHS 134
+N+R+ H+T L G+SPL+RPL +YI+YG+IN+DKP+NPSSHEVV+WIKRIL+ +KTGH+
Sbjct: 1 MNIRSTHFTLLECGWSPLRRPLSEYIKYGMINMDKPSNPSSHEVVSWIKRILKCDKTGHA 60
Query: 135 GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
GTLDPKVTG LI+C DRATRLVKSQQ AGK Y+ V
Sbjct: 61 GTLDPKVTGALIICTDRATRLVKSQQNAGKTYIGV 95
>gi|290559671|gb|EFD92997.1| PUA domain containing protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 223
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 121/202 (59%), Gaps = 3/202 (1%)
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
TG + Q PP+ S VKRQ R R +Y S+++E + V+F + E+GTY+R + +G
Sbjct: 19 FTGEITQMPPVRSHVKRQYRQREVYYSEIIE--ISGKDVLFKVGVESGTYIRKLIHDMGE 76
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LGVG HM ELRR + L E +N+VT+ D+ DA +Y N +D L + I +E +
Sbjct: 77 NLGVGAHMVELRRTKVSTLSEKNNLVTLQDLEDAIHMYVNEKDVRLLNQCIGNIESAIDF 136
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVM 368
R+ V DTTV+ +C+G+ + IPG+++ D + GE V +MT KGE +ALG + +++ +
Sbjct: 137 IPRIFVSDTTVDPVCHGSPVAIPGIVKL-TDFDKGELVAIMTLKGEIIALGKSVLSSEDI 195
Query: 369 ATCDHGVVARIKRVVMDRDTYP 390
+ GV + V+M+ TYP
Sbjct: 196 KSIKRGVAVKTDSVIMNIGTYP 217
>gi|269986501|gb|EEZ92786.1| PUA domain containing protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 223
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 4/221 (1%)
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
LH +V D + + G + Q PP+ S VKRQ R R IY S +LE ++ V+F
Sbjct: 2 HLHSEV-DEQLLRDTFDKFIGKIMQLPPVRSHVKRQYRQREIYYSDILE--INGRDVLFK 58
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+ E+GTY+R + +G L VG HM ELRR + L E DN+VT+ D+ DA + Y+
Sbjct: 59 VGVESGTYIRKLIHDMGEELKVGAHMVELRRTKVSTLSEKDNLVTLQDLDDAVYFYEKEN 118
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
D+ L + + +E + ++ + D V+ +C G+ L +PG+++F ND E V +MT
Sbjct: 119 DDKLLNKCLDSIESAVDFIPKVFISDGAVDPVCRGSPLAVPGIVKF-NDFGKEEVVGIMT 177
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPR 391
KGE +ALG A M+ + + G+ + V+M DTYP+
Sbjct: 178 LKGELIALGKAVMSADEIKSFKKGIAVKTDSVIMKIDTYPK 218
>gi|222622589|gb|EEE56721.1| hypothetical protein OsJ_06224 [Oryza sativa Japonica Group]
Length = 113
Score = 128 bits (322), Expect = 7e-27, Method: Composition-based stats.
Identities = 59/97 (60%), Positives = 74/97 (76%)
Query: 89 YSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVC 148
+SPLK+P+ ++ YG+INL+KP+N SHEV+ W K +L +EKT H+GTLDPKVTGNLIVC
Sbjct: 17 HSPLKQPIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVC 76
Query: 149 IDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARA 185
++RATRLVKS GA E +CVA H VPD VA A
Sbjct: 77 VNRATRLVKSWLGASNECICVACFHAIVPDKTHVACA 113
>gi|147677607|ref|YP_001211822.1| pseudouridine synthase [Pelotomaculum thermopropionicum SI]
gi|189036550|sp|A5D2S3.1|TRUB_PELTS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|146273704|dbj|BAF59453.1| pseudouridine synthase [Pelotomaculum thermopropionicum SI]
Length = 316
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+N+ KP SSH+VV I+RI V+K GH+GTLDP G L+VC+ ATRL + G
Sbjct: 3 GIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLLGE 62
Query: 163 GKEY---------VCVARLHDKVPDV--------AKVARALEALTGAVFQRPPLISAVK- 204
KEY + ++ D + R L TG V Q PP+ SA+K
Sbjct: 63 DKEYRVEITFGMSTSTGDSYGEITDQRDASFLKEHDIIRVLPEFTGEVRQVPPMTSAIKW 122
Query: 205 -------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
R + I+++ + + + +SC GTYVR++C
Sbjct: 123 RGKKLYELAREGLVVERQERAVYIKSLEFIRGSGWGTPSPRALMHLSCSKGTYVRSLCHD 182
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVL 305
+G LG G HM L R R+G D+ VT+ ++ A + L R I+ ++
Sbjct: 183 MGSRLGCGAHMSFLVRTRAGPFKIADS-VTLEELQAAA-------SKGVLERKIIEMDRA 234
Query: 306 LTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362
++ Y ++VK + V A+ G+KL IPG+ R D++ G+ V L G L IAE
Sbjct: 235 VSEYPEVIVKSSAVKAVAAGSKLYIPGVARMPLDLDCGKLVRLTGPDG---LLAIAE 288
>gi|312111632|ref|YP_003989948.1| tRNA pseudouridine synthase B [Geobacillus sp. Y4.1MC1]
gi|336236007|ref|YP_004588623.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720551|ref|ZP_17694733.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216733|gb|ADP75337.1| tRNA pseudouridine synthase B [Geobacillus sp. Y4.1MC1]
gi|335362862|gb|AEH48542.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365904|gb|EID43195.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidans
TNO-09.020]
Length = 302
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 140/297 (47%), Gaps = 52/297 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ VA I+R+LR +K GH+GTLDP V+G L +CI +ATR+ + G+
Sbjct: 3 GVLLLHKPPGMTSHDCVARIRRMLRTKKVGHTGTLDPNVSGVLPICIGKATRIAEFLTGS 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y + + D++ + + LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGIATTTEDSDGEIVAKQKVDRIIHRSDIEEVFRQLTGEIAQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R RI TI+E LLE + D F + C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGVEVERPTRIVTIHELTLLEERDTFSGDTVSFRFRVVCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM +L R SG ++ D + + L + Y + ++ V++P+E
Sbjct: 183 VMIGERLGYPAHMSDLVRTASGPF-------SLQDCVTFEQL-ERYIENGQVQSVLLPIE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
L + + D + GA L +P L+ + V++MT + EA+AL I
Sbjct: 235 KALFHLPKYEINDKVAEKVKNGAILPLPAFLQ-----SLQGPVLMMTKQSEALALYI 286
>gi|392373661|ref|YP_003205494.1| tRNA pseudouridine synthase B [Candidatus Methylomirabilis oxyfera]
gi|258591354|emb|CBE67653.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Candidatus Methylomirabilis
oxyfera]
Length = 313
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 146/299 (48%), Gaps = 48/299 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++N++KP +SH+VV ++R+L++ + GH+GTLDP+ TG L +C+ RATR+ + A
Sbjct: 5 GVLNINKPGGMTSHDVVDVVRRLLKMRRIGHTGTLDPRATGVLPLCVGRATRIAQFLTQA 64
Query: 163 GKEYVCVARL------------------HDKVPDVAKVARALEALTGAVFQRPPLISA-- 202
KEY+ +L H V D A++ LE+ G + Q PPL SA
Sbjct: 65 DKEYLITMQLGITTDTLDADGKVLSRTDHIDV-DPARLREVLESFVGEIQQVPPLFSAKK 123
Query: 203 ---------------VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
V+RQ IY+ LLE D+ V F +SC GTY RT+C +G
Sbjct: 124 HHGERLYRLARRGETVERQPVAIRIYDLTLLECDLP--FVRFRVSCSKGTYARTLCDDVG 181
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
+LG G H+ L RVRSG D + + ++ + D RD V++P+ L
Sbjct: 182 RVLGCGAHLYALTRVRSGRFLIEDALTL--EQLEQAVVEDRIRD------VLIPIGEALG 233
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
+ + + + G + LL F ++E G+ V ++ + + ++L AE T A
Sbjct: 234 HLPVVRIHPESSRGVVQGGGMAAGTLLSFPMEVEKGDLVRVLGYRRQLLSL--AEATVA 290
>gi|433546003|ref|ZP_20502341.1| tRNA pseudouridine synthase B [Brevibacillus agri BAB-2500]
gi|432182619|gb|ELK40182.1| tRNA pseudouridine synthase B [Brevibacillus agri BAB-2500]
Length = 308
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 149/320 (46%), Gaps = 58/320 (18%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G++ +DKPA +SH+ VA I+R+ +K GH+GTLDP VTG L +C+ ATRLV+ Q
Sbjct: 5 HGVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGNATRLVEYLQD 64
Query: 162 AGKEYVCVARLH-------------DKVP------DVAKVARALEALTGAVFQRPPLISA 202
K Y V RL ++ P V ++ + L++ G + Q PP+ SA
Sbjct: 65 LPKRYNVVLRLGSATTTEDASGEVLEQAPVDAAAITVERIEQLLQSFLGEIEQVPPMFSA 124
Query: 203 VK-----------------RQLRIRTIYESKLLEYDVDRHLV--VFWISCEAGTYVRTMC 243
VK RQ R T+YE L E VD V F +C GTY+RT+C
Sbjct: 125 VKVNGKRLYDLAREGTVIERQPRKVTLYELTLHEIKVDGDSVDISFTCTCSKGTYMRTLC 184
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V LG LG HM+ LRR++SG E + + Q L + L R ++ +
Sbjct: 185 VDLGRALGYPAHMKLLRRIKSGPFVEE-------EAIPLQELEERAASGEDLSRYLVSIP 237
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEM 363
++ VK A+ G +PG+ D EVG + L GE + LGI +
Sbjct: 238 QAISFLPSYQVKPERTRAVRNGLATALPGV-----DAEVGSLICLFA--GEEL-LGIHRV 289
Query: 364 TTAVMATCDHGVVARIKRVV 383
D G+ A+ ++V
Sbjct: 290 CRG-----DKGLFAKAEKVF 304
>gi|399055581|ref|ZP_10743276.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. CF112]
gi|398046790|gb|EJL39374.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. CF112]
Length = 308
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 149/320 (46%), Gaps = 58/320 (18%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G++ +DKPA +SH+ VA I+R+ +K GH+GTLDP VTG L +C+ ATRLV+ Q
Sbjct: 5 HGVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGNATRLVEYLQD 64
Query: 162 AGKEYVCVARLH-------------DKVP------DVAKVARALEALTGAVFQRPPLISA 202
K Y V RL ++ P V ++ + L++ G + Q PP+ SA
Sbjct: 65 LPKRYNVVLRLGSATTTEDASGEVLEQAPVDAAAITVERIEQLLQSFLGEIEQVPPMFSA 124
Query: 203 VK-----------------RQLRIRTIYESKLLEY--DVDRHLVVFWISCEAGTYVRTMC 243
VK RQ R T+YE L E D D + F +C GTY+RT+C
Sbjct: 125 VKVNGKRLYDLAREGTVIERQPRKVTLYELTLHEIKADGDSVDISFTCTCSKGTYMRTLC 184
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V LG LG HM+ LRR++SG E + + Q L + L R ++ +
Sbjct: 185 VDLGRALGYPAHMKLLRRIKSGPFVEE-------EAIPLQELEERAASGEDLSRYLVSIP 237
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEM 363
++ VK A+ G +PG+ D EVG + L GE + LGI +
Sbjct: 238 QAISFLPSYQVKPERTRAVRNGLATALPGV-----DAEVGSLICLFA--GEEL-LGIHRV 289
Query: 364 TTAVMATCDHGVVARIKRVV 383
D G+ A+ ++V
Sbjct: 290 CRG-----DKGLFAKAEKVF 304
>gi|421872747|ref|ZP_16304364.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus GI-9]
gi|372458162|emb|CCF13913.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus GI-9]
Length = 310
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 137/288 (47%), Gaps = 47/288 (16%)
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
++G++ L KPA +SH+ VA I+RI + +K GH+GTLDP VTG L +CI+ ATR+V+ Q
Sbjct: 5 QHGVLVLHKPAGMTSHDCVAKIRRIFQTKKVGHTGTLDPDVTGVLPICINNATRIVEYLQ 64
Query: 161 GAGKEYVCVARLHDKVP--------------DVAKVAR-----ALEALTGAVFQRPPLIS 201
K Y V R+ D A + R A++ + G + Q PP+ S
Sbjct: 65 ELPKAYEVVMRIGSTTTTEDASGEVVETAKVDAATITRERVEEAMKEMLGVIEQTPPMYS 124
Query: 202 AVK-----------------RQLRIRTIYESKL--LEYDVDRHLVVFWISCEAGTYVRTM 242
A+K R+ R TIYE +L +E + D V F+ C GTY+RT+
Sbjct: 125 AIKVNGQRLYDLAREGITIERKAREVTIYELQLHHIESNADYVDVSFYCLCSKGTYMRTL 184
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
CV LG LG HM +L RV+SG M H + + + + + +++P+
Sbjct: 185 CVDLGQKLGYPAHMAKLVRVKSGPF----TMQHAHTFEELEASMNKEQGSKSIEELVIPI 240
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
L+ R + A+ G + +PG IE G+ + L +
Sbjct: 241 GEALSYLPRYEITADRAKAVLNGLETGLPGC-----QIEEGKLICLYS 283
>gi|410456929|ref|ZP_11310776.1| tRNA pseudouridine synthase B [Bacillus bataviensis LMG 21833]
gi|409926903|gb|EKN64054.1| tRNA pseudouridine synthase B [Bacillus bataviensis LMG 21833]
Length = 305
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 143/298 (47%), Gaps = 58/298 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KPA +SH+ V +++IL+ +K GH+GTLDP VTG L +C+ +AT++ + A
Sbjct: 3 GILPLFKPAGLTSHDCVFKLRKILKTKKVGHTGTLDPDVTGVLPICVGKATKVAEYITDA 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
GK Y V + D++ ++ L++LTG + Q PP+ SAVK
Sbjct: 63 GKAYEGEVTLGFSTTTEDASGEVVERKSVDRIISRDEIMEILKSLTGEIEQTPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLEYDVDRHLVV-------FWISCEAGTYVR 240
R RI TIY +LL+ DR + F +SC GTY+R
Sbjct: 123 VGGVRLYEYARKGMVVERPTRIVTIYSIELLD---DREHFLGEEISFRFKVSCSKGTYIR 179
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
T+ V +G LG HM L+RV+S D + T ++ + + + V+
Sbjct: 180 TLAVMIGERLGFPAHMSNLQRVQSATFSLEDCL-TFEEI-------EQHMAAGTISSVLK 231
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
PLE L+ +L++ D + GA L IP + EN + ++ T +G A+A+
Sbjct: 232 PLETALSHLPKLLINDKVAEKVKNGALLPIPE--QLEN---INGPIIAETNEGFALAI 284
>gi|89101190|ref|ZP_01174021.1| tRNA pseudouridine 55 synthase [Bacillus sp. NRRL B-14911]
gi|89084099|gb|EAR63269.1| tRNA pseudouridine 55 synthase [Bacillus sp. NRRL B-14911]
Length = 307
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 136/295 (46%), Gaps = 52/295 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII L KP +SH+ V +++ILR+++ GH+GTLDP VTG L +CI RAT++ + A
Sbjct: 5 GIIPLFKPKGMTSHDCVFKLRKILRMKRIGHTGTLDPDVTGVLPICIGRATKVAEYITDA 64
Query: 163 GKEYVCVARLH-------------DKVPDVAKVARA-----LEALTGAVFQRPPLISAVK 204
GK Y L ++ P +V RA LE L G + Q PP+ SAVK
Sbjct: 65 GKAYEGEVTLGFSTSTEDASGEKIEEKPVAGRVTRAQVIDVLENLKGEITQTPPMYSAVK 124
Query: 205 -----------------RQLRIRTIYESKLL----EYDVDRHLVVFWISCEAGTYVRTMC 243
R R +IY +LL E++ F + C GTY+RT+
Sbjct: 125 VNGKRLYEYARKGIEVERPTRKVSIYSIELLSEEQEFEGPNPSFRFRVECSKGTYIRTLA 184
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R+RS + + + T D+ + ++ L I PLE
Sbjct: 185 VMIGEALGYPAHMSGLERIRSASFAKEECL-TFKDI-------EALQESGELAAKIRPLE 236
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
++ + + DT + GA L IP L E +V+ T G A+A+
Sbjct: 237 EGISHLPKYTISDTVAEKVKNGALLNIPDFLEKETG-----PIVVQTEAGTALAI 286
>gi|339009428|ref|ZP_08642000.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus LMG
15441]
gi|338773906|gb|EGP33437.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus LMG
15441]
Length = 310
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 42/270 (15%)
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
++G++ L KPA +SH+ VA I+RI + +K GH+GTLDP VTG L +CI+ ATR+V+ Q
Sbjct: 5 QHGVLVLHKPAGMTSHDCVAKIRRIYQTKKVGHTGTLDPDVTGVLPICINNATRIVEYLQ 64
Query: 161 GAGKEYVCVARLHDKVP--------------DVAKVAR-----ALEALTGAVFQRPPLIS 201
K Y V R+ D A + R A++ + G + Q PP+ S
Sbjct: 65 ELPKAYEVVMRIGSTTTTEDASGEVVETAKVDAASITRERVEEAMKEMLGVIEQTPPMYS 124
Query: 202 AVK-----------------RQLRIRTIYESKL--LEYDVDRHLVVFWISCEAGTYVRTM 242
A+K R+ R TIYE +L +E + + V F+ C GTY+RT+
Sbjct: 125 AIKVNGQRLYDLAREGITIERKAREVTIYELQLHHIESNAEYVDVSFYCLCSKGTYMRTL 184
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
CV LG LG HM +L RV+SG M H + + + + + ++++P+
Sbjct: 185 CVDLGQKLGYPAHMAKLVRVKSGPF----TMQHAHTFEELEASMNKEQGSKSIEQLVIPI 240
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
L+ R + A+ G + +PG
Sbjct: 241 GEALSYLPRYEITADRAKAVLNGLETGLPG 270
>gi|374625675|ref|ZP_09698091.1| tRNA pseudouridine synthase B [Coprobacillus sp. 8_2_54BFAA]
gi|373915335|gb|EHQ47106.1| tRNA pseudouridine synthase B [Coprobacillus sp. 8_2_54BFAA]
Length = 280
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 58/288 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII ++KP+ +SH+VV ++RIL+ +K GH GTLDP TG L+VC+++AT++++
Sbjct: 3 GIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSE 62
Query: 163 GKEYVCVARLHDKVP-----------------DVAKVARALEALTGAVFQRPPLISAVK- 204
KEYV L D ++ G+ Q+PP+ SA+K
Sbjct: 63 SKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKV 122
Query: 205 ------------RQLRI--RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
Q+ + R++ + L ++ +L+ F + C GTY+R++C L L
Sbjct: 123 NGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAKAL 182
Query: 251 GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
G GHM++L R +SG +N T+ + + ++ + LE L SY+
Sbjct: 183 GYPGHMKDLIRTKSGNFSL-ENCFTLEQIENGEY-------------TTVSLEEALNSYQ 228
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
+LVV D + I +G K+ ++D+ E+VV++ +G+ +A+
Sbjct: 229 QLVVDDEKI--IFHGKKI--------KSDLN--EQVVILNQQGKVLAM 264
>gi|398814368|ref|ZP_10573049.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. BC25]
gi|398036637|gb|EJL29846.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. BC25]
Length = 308
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 104/209 (49%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+ VA I+R+ +K GH+GTLDP VTG L +C+ ATRLV+ Q
Sbjct: 6 GVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYLQEL 65
Query: 163 GKEYVCVARLHDKVP--------------DVA-----KVARALEALTGAVFQRPPLISAV 203
K Y V RL D A ++ E+ G + Q PP+ SAV
Sbjct: 66 PKRYDVVMRLGSTTTTEDASGEVVEQAGVDAASITTERIQALFESFLGEMEQVPPMFSAV 125
Query: 204 K-----------------RQLRIRTIYESKLLEYDVDRHL--VVFWISCEAGTYVRTMCV 244
K RQ R T+YE L + VD V F +C GTY+RT+CV
Sbjct: 126 KVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMRTLCV 185
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM+ LRR++SG E + +
Sbjct: 186 DLGRALGYPAHMKLLRRIKSGPFQEQEAI 214
>gi|365832580|ref|ZP_09374112.1| tRNA pseudouridine synthase B [Coprobacillus sp. 3_3_56FAA]
gi|365260244|gb|EHM90207.1| tRNA pseudouridine synthase B [Coprobacillus sp. 3_3_56FAA]
Length = 280
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 58/288 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII ++KP+ +SH+VV ++RIL+ +K GH GTLDP TG L+VC+++AT++++
Sbjct: 3 GIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSE 62
Query: 163 GKEYVCVARLHDKVP-----------------DVAKVARALEALTGAVFQRPPLISAVK- 204
KEYV L D ++ G+ Q+PP+ SA+K
Sbjct: 63 SKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKV 122
Query: 205 ------------RQLRI--RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
Q+ + R++ + L ++ +L+ F + C GTY+R++C L L
Sbjct: 123 NGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAKAL 182
Query: 251 GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
G GHM++L R +SG +N T+ + + ++ + LE L SY+
Sbjct: 183 GYPGHMKDLIRTKSGNFSL-ENCFTLEQIENGEY-------------TTVSLEEALNSYQ 228
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
+LVV D + I +G K+ ++D+ E+VV++ +G+ +A+
Sbjct: 229 QLVVDDEKI--IFHGKKI--------KSDLN--EQVVILNRQGKVLAM 264
>gi|226313016|ref|YP_002772910.1| tRNA pseudouridine synthase B [Brevibacillus brevis NBRC 100599]
gi|226095964|dbj|BAH44406.1| tRNA pseudouridine synthase B [Brevibacillus brevis NBRC 100599]
Length = 308
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 104/209 (49%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+ VA I+R+ +K GH+GTLDP VTG L +C+ ATRLV+ Q
Sbjct: 6 GVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYLQEL 65
Query: 163 GKEYVCVARLHDKVP--------------DVA-----KVARALEALTGAVFQRPPLISAV 203
K Y V RL D A ++ E+ G + Q PP+ SAV
Sbjct: 66 PKRYDVVMRLGSTTTTEDASGEVVEQAGVDAAWITTERIQALFESFLGEMEQVPPMFSAV 125
Query: 204 K-----------------RQLRIRTIYESKLLEYDVDRHL--VVFWISCEAGTYVRTMCV 244
K RQ R T+YE L + VD V F +C GTY+RT+CV
Sbjct: 126 KVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMRTLCV 185
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM+ LRR++SG E + +
Sbjct: 186 DLGRALGYPAHMKLLRRIKSGPFQEQEAI 214
>gi|167756862|ref|ZP_02428989.1| hypothetical protein CLORAM_02411 [Clostridium ramosum DSM 1402]
gi|167703037|gb|EDS17616.1| tRNA pseudouridine synthase B [Clostridium ramosum DSM 1402]
Length = 282
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 58/288 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII ++KP+ +SH+VV ++RIL+ +K GH GTLDP TG L+VC+++AT++++
Sbjct: 5 GIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSE 64
Query: 163 GKEYVCVARLHDKVP-----------------DVAKVARALEALTGAVFQRPPLISAVK- 204
KEYV L D ++ G+ Q+PP+ SA+K
Sbjct: 65 SKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKV 124
Query: 205 ------------RQLRI--RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
Q+ + R++ + L ++ +L+ F + C GTY+R++C L L
Sbjct: 125 NGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAKAL 184
Query: 251 GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
G GHM++L R +SG +N T+ + + ++ + LE L SY+
Sbjct: 185 GYPGHMKDLIRTKSGNFSL-ENCFTLEQIENGEY-------------TTVSLEEALNSYQ 230
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
+LVV D + I +G K+ ++D+ E+VV++ +G+ +A+
Sbjct: 231 QLVVDDEKI--IFHGKKI--------KSDLN--EQVVILNRQGKVLAM 266
>gi|237734572|ref|ZP_04565053.1| tRNA pseudouridine synthase B [Mollicutes bacterium D7]
gi|229382392|gb|EEO32483.1| tRNA pseudouridine synthase B [Coprobacillus sp. D7]
Length = 283
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 142/288 (49%), Gaps = 58/288 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII ++KP+ +SH+VV ++RIL+ +K GH GTLDP TG L+VC+++AT++++
Sbjct: 6 GIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSE 65
Query: 163 GKEYVCVARLHDKVP-----------------DVAKVARALEALTGAVFQRPPLISAVK- 204
KEYV L D ++ G+ Q+PP+ SA+K
Sbjct: 66 SKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKV 125
Query: 205 ------------RQLRI--RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
Q+ + R++ + L ++ +L+ F + C GTY+R++C L L
Sbjct: 126 NGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAKAL 185
Query: 251 GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
G GHM++L R +SG +N T+ + + ++ + LE L SY+
Sbjct: 186 GYPGHMKDLIRTKSGNFSL-ENCFTLEQIENGEY-------------TTVSLEEALNSYQ 231
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
+LVV D + I +G K+ ++D+ E+VV++ +G+ +A+
Sbjct: 232 QLVVDDEKI--IFHGKKI--------KSDLN--EQVVILNRQGKVLAM 267
>gi|239826660|ref|YP_002949284.1| tRNA pseudouridine synthase B [Geobacillus sp. WCH70]
gi|239806953|gb|ACS24018.1| tRNA pseudouridine synthase B [Geobacillus sp. WCH70]
Length = 302
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 141/297 (47%), Gaps = 52/297 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ VA I+R+L+++K GH+GTLDP V+G L +CI +ATR+ + GA
Sbjct: 3 GVLLLHKPPGMTSHDCVARIRRMLQIKKVGHTGTLDPNVSGVLPICIGKATRIAEFLTGA 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y + + D+V ++ LTG V Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGIATTTEDSTGEIIAKQKVDRVIPRDEIEAVFRQLTGEVAQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R RI TI+E LL+ + D F ++C GTY+RT+
Sbjct: 123 VKGKKLYEYARAGIEVERPTRIVTIHELTLLDERDAFAGDIVSFRFRVTCSKGTYIRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM +L R SG ++ D + + L + Y + L+ +++P+
Sbjct: 183 VMIGERLGYPAHMSDLVRTASGPF-------SLQDCVTFEQL-EQYIESGQLKSILLPIG 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
L + + D + GA L +P L+ + V++++ + EA+AL I
Sbjct: 235 KALFHLPKYEINDKVAEKVKNGAILPLPAFLQ-----SLEGPVLMISKQREALALYI 286
>gi|402574029|ref|YP_006623372.1| tRNA pseudouridine synthase B [Desulfosporosinus meridiei DSM
13257]
gi|402255226|gb|AFQ45501.1| tRNA pseudouridine synthase B [Desulfosporosinus meridiei DSM
13257]
Length = 294
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 104/197 (52%), Gaps = 34/197 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP +S +VV WI+R L+++K GH+GTLDP V G L +C+ +ATRL +
Sbjct: 3 GIINVLKPPGMTSSDVVVWIRRSLKMKKVGHTGTLDPGVAGVLPICVGKATRLAEYITDQ 62
Query: 163 GKEYVCVAR--------------LHDKVP--DVAKVARALEALTGAVFQRPPLISAVKRQ 206
GK+Y+ + + + +P D A + R L TG + Q PPL SAV+++
Sbjct: 63 GKKYIAEVKFGITTDTQDAYGKVIQETLPSLDKADLERILPDFTGKISQLPPLFSAVRKE 122
Query: 207 LRIRTIYESKLLEYDVD-RHLVVF------W-----------ISCEAGTYVRTMCVHLGL 248
+ Y K + ++ R ++++ W I C GTY+RT+C LG
Sbjct: 123 GKHLYEYARKGIPIEITPREVIIYKLNLEQWYQGEFPKAVLNIECSKGTYIRTICHDLGQ 182
Query: 249 ILGVGGHMQELRRVRSG 265
LG G HM L RVRSG
Sbjct: 183 TLGCGAHMSYLVRVRSG 199
>gi|319649517|ref|ZP_08003673.1| TRNA pseudouridine 55 synthase [Bacillus sp. 2_A_57_CT2]
gi|317398679|gb|EFV79361.1| TRNA pseudouridine 55 synthase [Bacillus sp. 2_A_57_CT2]
Length = 305
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 133/268 (49%), Gaps = 47/268 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +SH+ V +++ILR++K GH+GTLDP VTG L +C+ RAT++ + A
Sbjct: 3 GILPLFKPKGMTSHDCVFKLRKILRMKKIGHTGTLDPDVTGVLPICLGRATKVAEYITDA 62
Query: 163 GKEY---VCVA---RLHDKVPDV-------AKVAR-----ALEALTGAVFQRPPLISAVK 204
GK Y V + D +V A +AR AL++LTG + Q PP+ SAVK
Sbjct: 63 GKSYEGEVTIGFSTTTEDASGEVVERKDVTAPIARNQIMDALQSLTGEITQTPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R R TIY +LL+ ++ + F ++C GTY+RT+
Sbjct: 123 VNGKRLYEYARQGIEVERPSRKVTIYSIELLDGRKMFEGENITFRFRVACSKGTYIRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM EL R++S L T+ D + + + + ++ + V+ P+E
Sbjct: 183 VMIGSELGYPAHMSELVRIQSASL-------TLDDCLTFEEIEERV-EKGTMDEVLRPME 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIP 331
L+ + + D + GA L IP
Sbjct: 235 AALSHLPKFQISDKVAEKVKNGAVLTIP 262
>gi|373857335|ref|ZP_09600077.1| tRNA pseudouridine synthase B [Bacillus sp. 1NLA3E]
gi|372452985|gb|EHP26454.1| tRNA pseudouridine synthase B [Bacillus sp. 1NLA3E]
Length = 305
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 137/298 (45%), Gaps = 58/298 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +SH+ V +++ILR+++ GH+GTLDP+V G L +CI RAT++ + A
Sbjct: 3 GILPLFKPKGMTSHDCVFKLRKILRIKRIGHTGTLDPEVDGVLPICIGRATKVAEYITNA 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
GK Y + + DK ++ L +LTG + Q PP+ SAVK
Sbjct: 63 GKAYEGQVTIGSATTTEDATGEIIAEKAVDKSFTRQEILAMLHSLTGPITQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLEYDVDRHLVV-------FWISCEAGTYVR 240
R R TIY +LL+ DR + F +SC GTY+R
Sbjct: 123 VNGKRLYEYARQGIEVERPSRTVTIYSLELLD---DREIFAGESIQFRFRVSCSKGTYIR 179
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
T+ V +G LG HM L R ++ G + VT+ V + + V+
Sbjct: 180 TLAVMMGEQLGFPAHMSMLTRTQAASFGL-EECVTLAQV-------EEMVENGTFSDVLR 231
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
P+E L+ +LV+ D + GA L IP L+ VV+ T +G A+AL
Sbjct: 232 PIEEALSYLPKLVINDKLAERVKNGAVLPIPAHLQ-----NFTGSVVIETAEGLALAL 284
>gi|172057844|ref|YP_001814304.1| tRNA pseudouridine synthase B [Exiguobacterium sibiricum 255-15]
gi|171990365|gb|ACB61287.1| tRNA pseudouridine synthase B [Exiguobacterium sibiricum 255-15]
Length = 302
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 133/283 (46%), Gaps = 50/283 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKPA +SH+ V ++R+ + +K GH+GTLDP+VTG L +C+ RAT+L +
Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64
Query: 163 GKEYVCVARL---------HDKVPDVAKVARA----------LEALTGAVFQRPPLISAV 203
GK YV + H + V A L+ LTG + Q PP SAV
Sbjct: 65 GKRYVAEVTIGYATTTEDAHGETVRETPVTPASITEQQVDEILQQLTGQIEQTPPYYSAV 124
Query: 204 K--------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMC 243
K R ++I T+ + L + I+C GTY+RT+
Sbjct: 125 KVNGKKLYEYARKGIEVERPTRTVQIDTLERTSGLTFADGLCRFQIEIACGKGTYIRTLA 184
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM ELRR SG++ E + VT+ + + + + + ++P+E
Sbjct: 185 VEIGEQLGYAAHMSELRRTSSGMMSETEA-VTLATLEACETVEERM-------QYVLPIE 236
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGL-LRFENDIEVGEE 345
++ + RL V T + GAKL PG+ + FE EE
Sbjct: 237 QVIQKWPRLTVNAETAARVLNGAKL--PGIPVEFERFTVYNEE 277
>gi|258516328|ref|YP_003192550.1| tRNA pseudouridine synthase B [Desulfotomaculum acetoxidans DSM
771]
gi|257780033|gb|ACV63927.1| tRNA pseudouridine synthase B [Desulfotomaculum acetoxidans DSM
771]
Length = 309
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 130/268 (48%), Gaps = 45/268 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP +SH++V +I+R+ ++K GH+GTLDP G L VC+ +ATR+ +
Sbjct: 3 GIINVLKPPGMTSHDIVNYIRRLTGIKKVGHTGTLDPGAAGVLPVCVGKATRVAEYLISY 62
Query: 163 GKEYVCVARLHDKVPDVAKVARALEA-----------------LTGAVFQRPPLISAVK- 204
K Y L R LE G+ Q P+ SAVK
Sbjct: 63 DKCYRAECTLGASTDTQDSFGRVLEVRDASCLAVGDIEAMLMTFVGSQEQIVPMFSAVKV 122
Query: 205 ----------------RQLRIRTIYESKLLEYD---VDRHLVVFWISCEAGTYVRTMCVH 245
R+ R +Y KLL+Y+ V+F ++C GTYVRT+C
Sbjct: 123 QGKKLYELARAGQRLEREARRINVYSIKLLDYEDLGTPAPRVLFEVTCSKGTYVRTICHD 182
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVL 305
LG LG GG+M L R R G+ + + VT+ ++ + Y D+ L R ++P++++
Sbjct: 183 LGQRLGYGGYMSFLIRTRVGVFDLSKS-VTLEELKE-------YADKGLLNRAMLPIDLV 234
Query: 306 LTSYKRLVVKDTTVNAICYGAKLMIPGL 333
L+ + V+++ V A+ G +L +PG+
Sbjct: 235 LSDMVAVQVRESAVAAVKAGNRLYLPGI 262
>gi|403069142|ref|ZP_10910474.1| tRNA-pseudouridine 5S synthase [Oceanobacillus sp. Ndiop]
Length = 297
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 122/264 (46%), Gaps = 43/264 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +SH+ V +R + +K GH+GTLDP+V G L +CI +AT++V
Sbjct: 3 GILPLWKPKGFTSHDCVMKCRRYFKTKKVGHTGTLDPEVEGILPICIGQATKIVPFLTET 62
Query: 163 GKEYVCVARL---------HDKV---------PDVAKVARALEALTGAVFQRPPLISAVK 204
K Y+ +L H V P V+ + L + TG + Q PP+ SAVK
Sbjct: 63 SKTYIAELKLGSTTDTEDAHGSVIEQKELTDFPAVSVIDDVLASFTGKITQVPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
R R TIYE L D + + I C GTY+RT+CV +G
Sbjct: 123 VNGKKLYEYARANQEVERPKREVTIYELDKLSVDPQQQTIRMKIICSKGTYIRTLCVDIG 182
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
LG HM L R ++G E N VT + +A + +N +D ++ P+ LT
Sbjct: 183 KELGYPAHMSALVRTKTGSFSEK-NSVTFDTIEEA--MENNTQD-----NLLHPITAGLT 234
Query: 308 SYKRLVVKDTTVNAICYGAKLMIP 331
+L V +TT + G KL P
Sbjct: 235 HMDKLTVNETTKVKVMNGQKLPKP 258
>gi|359298905|ref|ZP_09184744.1| tRNA pseudouridine synthase B [Haemophilus [parainfluenzae] CCUG
13788]
gi|402305659|ref|ZP_10824718.1| tRNA pseudouridine(55) synthase [Haemophilus sputorum HK 2154]
gi|400376772|gb|EJP29659.1| tRNA pseudouridine(55) synthase [Haemophilus sputorum HK 2154]
Length = 305
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 48/298 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGVSSNDIMQKVKRLFKANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K YV A+L ++ A + AL A G + Q P + SA+K
Sbjct: 72 SDKRYVVTAKLGERTDTSDAEGQVVQSREVNVAEADILAALPAFRGEILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E K ++Y + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARAGVTVEREARPITIFELKFIDYQAP--FLTLEVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LG G H+ LRR+ + + M + D L D++ + L R+++P++ +TS
Sbjct: 190 ALGCGAHVTMLRRLAVA----DYPIEEMMPIEDLALLADSF-PSSELDRLLLPMDTAVTS 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
+L + A+ +G + ++FEN + V L + G+ LGIAE+T
Sbjct: 245 LPQLNLTAEQTKAVGFGQR------VKFENPQALSGLVRLFSENGQ--FLGIAEITVG 294
>gi|297530559|ref|YP_003671834.1| tRNA pseudouridine synthase B [Geobacillus sp. C56-T3]
gi|297253811|gb|ADI27257.1| tRNA pseudouridine synthase B [Geobacillus sp. C56-T3]
Length = 302
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 140/295 (47%), Gaps = 52/295 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L+KP +SH+ VA ++R+L V+K GH+GTLDP V+G L +C+ +ATR+ + G
Sbjct: 3 GVLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGT 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y + AR D+ A++ ++LTG + Q PP+ SAVK
Sbjct: 63 TKAYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLL----EYDVDRHLVVFWISCEAGTYVRTMC 243
R R TIYE +LL ++ + F ++C GTYVRT+
Sbjct: 123 VGGKKLYEYARAGIEVERPTRRVTIYELELLDEREQFFGETVSFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM +L R SG D VT DV + D D +++P+E
Sbjct: 183 VMIGERLGYPAHMSDLIRTASGPFRLED-CVTFEDV--ERRAADGTADA-----LLIPIE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
L + + D + GA L +P L ++ VVL++ + EA+AL
Sbjct: 235 RALFHLPKYEINDKVAEKVKNGALLRLPAFLE-----KLDGPVVLVSPEREALAL 284
>gi|261419466|ref|YP_003253148.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC61]
gi|319766281|ref|YP_004131782.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC52]
gi|448237422|ref|YP_007401480.1| tRNA pseudouridine synthase B [Geobacillus sp. GHH01]
gi|261375923|gb|ACX78666.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC61]
gi|317111147|gb|ADU93639.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC52]
gi|445206264|gb|AGE21729.1| tRNA pseudouridine synthase B [Geobacillus sp. GHH01]
Length = 302
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 140/295 (47%), Gaps = 52/295 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L+KP +SH+ VA ++R+L V+K GH+GTLDP V+G L +C+ +ATR+ + G
Sbjct: 3 GVLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGT 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y + AR D+ A++ ++LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLL----EYDVDRHLVVFWISCEAGTYVRTMC 243
R R TIYE +LL ++ + F ++C GTYVRT+
Sbjct: 123 VGGKKLYEYARAGIEVERPTRRVTIYELELLDEREQFFGETVSFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM +L R SG D VT DV + D D +++P+E
Sbjct: 183 VMIGERLGYPAHMSDLIRTASGPFRLED-CVTFEDV--ERRAADGTADA-----LLIPIE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
L + + D + GA L +P L ++ VVL++ + EA+AL
Sbjct: 235 RALFHLPKYEINDKVAEKVKNGALLRLPAFLE-----KLDGPVVLVSPEREALAL 284
>gi|334134194|ref|ZP_08507706.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF7]
gi|333608276|gb|EGL19578.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF7]
Length = 311
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 36/202 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KP +SH+VVA +R L +++ GH+GTLDP+VTG L +CI RATR+V+ Q
Sbjct: 5 GILPILKPKGMTSHDVVAKARRFLGIKRIGHTGTLDPEVTGVLPLCIGRATRMVEYIQEL 64
Query: 163 GKEYVCV-------------ARLHDKVPDVA----KVARALEALTGAVFQRPPLISAVK- 204
K+Y + +++P V KV +++ G + Q PP+ SAVK
Sbjct: 65 PKQYEAAVVFGLATDTEDLSGNVLEEIPLVQLAEDKVRSVIQSFVGEISQVPPMYSAVKV 124
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL--VVFWISCEAGTYVRTMCVHL 246
R+ R TIYE +LLE D++R V F + C GTY+RT+CV +
Sbjct: 125 DGKRLYELARAGVEVERKARNVTIYEIELLELDLNRDHPEVRFRVLCSKGTYIRTLCVDI 184
Query: 247 GLILGVGGHMQELRRVRSGILG 268
G LGV M+EL R +G +G
Sbjct: 185 GRALGVPAAMKELVRSSTGRIG 206
>gi|375008238|ref|YP_004981871.1| tRNA pseudouridine synthase B [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287087|gb|AEV18771.1| tRNA pseudouridine synthase B [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 302
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 140/295 (47%), Gaps = 52/295 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L+KP +SH+ VA ++R+L V+K GH+GTLDP V+G L +C+ +ATR+ + G
Sbjct: 3 GVLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGT 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y + AR D+ A++ ++LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLL----EYDVDRHLVVFWISCEAGTYVRTMC 243
R R TIYE +LL ++ + F ++C GTYVRT+
Sbjct: 123 VGGKKLYEYARAGIEVERPTRRVTIYELELLDEREQFFGETVSFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM +L R SG D VT DV + D D +++P+E
Sbjct: 183 VMIGERLGYPAHMSDLIRTASGPFRLED-CVTFEDV--ERRAADGTADV-----LLIPIE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
L + + D + GA L +P L ++ VVL++ + EA+AL
Sbjct: 235 RALFHLPKYEINDKVAEKVKNGALLRLPAFLE-----KLDGPVVLVSPEREALAL 284
>gi|304404296|ref|ZP_07385958.1| tRNA pseudouridine synthase B [Paenibacillus curdlanolyticus YK9]
gi|304347274|gb|EFM13106.1| tRNA pseudouridine synthase B [Paenibacillus curdlanolyticus YK9]
Length = 302
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 130/262 (49%), Gaps = 44/262 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA ++ I RV++ GH+GTLDP+VTG L +CI RATR+V+ Q
Sbjct: 3 GILAVWKPAGWTSHDVVAKVRGITRVKRIGHAGTLDPQVTGVLPLCIGRATRVVEYLQER 62
Query: 163 GKEYVCVARLH-------------DKVPDVA----KVARALEALTGAVFQRPPLISAVK- 204
K Y V +L ++V V+ +VA AL A G + Q PP+ SA+K
Sbjct: 63 PKAYEAVLQLGIATDTEDMTGTTVEEVDSVSVTREEVAAALAAFIGEIDQVPPMYSALKV 122
Query: 205 ----------------RQLRIRTIYESKLLEY--DVDRHLVVFWISCEAGTYVRTMCVHL 246
R+ R IY+ +LLE+ D R + F + C GTY+RT+CV +
Sbjct: 123 DGKRLYELAREGVTVERKSRKVQIYQIRLLEFVQDERRPRIRFDVECSKGTYIRTLCVDI 182
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
G L V M EL R SG L ++ T+ + Q E L+ ++P + L
Sbjct: 183 GKRLNVPATMAELTRTMSGGL-TREHCFTIEQIAALQ-------QEGQLQAQLLPSDAAL 234
Query: 307 TSYKRLVVKDTTVNAICYGAKL 328
T +LV + G KL
Sbjct: 235 THMTKLVTDRQSAVVALQGRKL 256
>gi|154707141|ref|YP_001423975.1| tRNA pseudouridine synthase B [Coxiella burnetii Dugway 5J108-111]
gi|189036468|sp|A9KBM3.1|TRUB_COXBN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|154356427|gb|ABS77889.1| tRNA pseudouridine synthase B [Coxiella burnetii Dugway 5J108-111]
Length = 309
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 53/293 (18%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
KRP VD G++ LDKP +S+E + +KR+ +K GH+G+LDP TG L +C+
Sbjct: 10 FKRP-VD----GVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICLGE 64
Query: 152 ATRLVKSQQGAGKEYVCVARLHDK---------------VPDVAKVA--RALEALTGAVF 194
AT+ + GA K Y RL + +P + K A + L A G +
Sbjct: 65 ATKFSQFLLGADKSYSVKGRLGVRTASGDSESPILTERPIPKLTKRALEKTLSAFRGVID 124
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q P + SA+K R+ R TIYE LL++D + + ++ C GT
Sbjct: 125 QTPSMYSALKHKGQPLYKLARQGIEVERKTRQVTIYELTLLDWDNES--IELYVHCSKGT 182
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ +G LG G H+ LRR+R E+ + H ++ ++ NY L R
Sbjct: 183 YIRTLLDDVGEALGCGAHVVALRRLRVAHYHEDQMIKLAH--LEREYDKANYTG---LDR 237
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP-----GLLRF--ENDIEVG 343
++PLE +++ + + + +T + G +M+P G +R +ND +G
Sbjct: 238 YLLPLETMVSHFPAIKLSSSTAFYLQQGQAVMVPNAPTHGFVRLRDQNDQFIG 290
>gi|255100335|ref|ZP_05329312.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-63q42]
Length = 301
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 44/290 (15%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
II++ KP +SH+VV+ +++IL ++K GH+GTLDP +G L +CI +AT++ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 164 KEYVCVARL------HDKVPDVAK-----------VARALEALTGAVFQRPPLISAVK-- 204
K Y+C L +D ++ K + RA + G + Q PP+ SA+K
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 205 -----------RQ----LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
RQ L+ R + + + + V+F++ C GTYVR++C +G
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDIGEY 183
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G HM L R SG + DN +T+ ++ + Y+N + YL ++ +L S+
Sbjct: 184 LGCGAHMSFLNRTSSGKF-DLDNSITLEEL---ELFYENKTLDKYL----YDIDYVLDSF 235
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+V+ + C G + L+ N+ + +E V + + + LG
Sbjct: 236 NYVVLNPNAIKYYCNGGSIDDKRFLK--NNFDKDDEFVRVYSTDNFLGLG 283
>gi|116492658|ref|YP_804393.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus ATCC 25745]
gi|122265878|sp|Q03FS1.1|TRUB_PEDPA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116102808|gb|ABJ67951.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus ATCC 25745]
Length = 299
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 125/255 (49%), Gaps = 50/255 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII ++K +SH+VVA ++ ILR +K GHSGTLDP V G L +C+ RAT++V G
Sbjct: 3 GIIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPICVGRATKVVDYLMGF 62
Query: 163 GKEY-------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
GK Y V +L + + D ++ + L A+TG + Q PP+ SAV
Sbjct: 63 GKVYQGSITLGFSTTTEDLDGEVVETKKLDEPLTD-EQINQTLTAMTGTLIQIPPMYSAV 121
Query: 204 K--------------------RQLRIRTIYESKLLEYDVDR--HLVVFWISCEAGTYVRT 241
K RQ+++ +++ +D ++ + F +SC GTYVRT
Sbjct: 122 KVKGRKLYEYARAGETVERPQRQIKVYDFVQTRPSIFDAEKGQQTIYFKVSCGKGTYVRT 181
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+ V G G+ M +L R+ SG + + +T+ D+ A RDE L VI P
Sbjct: 182 LAVDFGRHFGLPAVMSDLSRLASGGF-KIEECLTLSDLEQA-------RDEDRLSTVIQP 233
Query: 302 LEVLLTSYKRLVVKD 316
L+ L ++ + + D
Sbjct: 234 LDRALDNFNTITISD 248
>gi|421894437|ref|ZP_16324926.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus IE-3]
gi|385272741|emb|CCG90298.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus IE-3]
Length = 299
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 123/254 (48%), Gaps = 48/254 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII ++K +SH+VVA ++ ILR +K GHSGTLDP V G L +C+ RAT++V G
Sbjct: 3 GIIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPICVGRATKVVDYLMGF 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
GK Y V + DK ++ + L A+TG + Q PP+ SAVK
Sbjct: 63 GKVYQGSITLGFSTTTEDLDGEVVETKKLDKPLTNEQINQTLTAMTGTLVQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDR--HLVVFWISCEAGTYVRTM 242
RQ+++ +++ +D ++ + F +SC GTYVRT+
Sbjct: 123 VKGRKLYEYARAGETVERPQRQIKVYDFVQTRPSIFDAEKGQQTIYFKVSCGKGTYVRTL 182
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
V G G+ M +L R+ SG + + +T+ D+ A RDE L VI PL
Sbjct: 183 AVDFGRHFGLPAVMSDLSRLASGGF-KIEECLTLSDLEQA-------RDEDRLSTVIQPL 234
Query: 303 EVLLTSYKRLVVKD 316
+ L ++ + + D
Sbjct: 235 DRALDNFNTITISD 248
>gi|190149951|ref|YP_001968476.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307263279|ref|ZP_07544897.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915082|gb|ACE61334.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306871341|gb|EFN03067.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 305
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 48/297 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDILQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L ++ A++ ALE G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGERTDTSDAEGQVVETRAVNVGEAEIITALEQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E + +EY + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELRFIEYAAP--YLTLEVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LG G H+ LRR+ N + M D Q L +N E L + ++PL+ + S
Sbjct: 190 VLGCGAHVTVLRRLAVA----NYPIEAMMSYADLQNLSENQPLEE-LDKYLLPLDTAVES 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
+L + A+ +G + ++FEN+ ++ +V L + + LG+AE+TT
Sbjct: 245 LPKLNLTAEQTKAVGFGQR------VKFENNDQIYGQVRLFSDNMQ--FLGVAEITT 293
>gi|322514412|ref|ZP_08067455.1| tRNA pseudouridine synthase B [Actinobacillus ureae ATCC 25976]
gi|322119660|gb|EFX91718.1| tRNA pseudouridine synthase B [Actinobacillus ureae ATCC 25976]
Length = 305
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 139/296 (46%), Gaps = 48/296 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDILQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L ++ A++ AL+ G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGERTDTSDAEGQVVETREVNVGEAEIIAALDQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E + +EY + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELRFIEYSAP--YLTLEVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LG G H+ LRR ++ N + M D Q L +N EA L + ++PL+ + S
Sbjct: 190 VLGCGAHVTVLRR----LVVANYPIEAMMSYADLQNLSENQPLEA-LDQYLLPLDTAVES 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
R+ + A+ +G + ++FEN + +V L + G+ LG+AE+T
Sbjct: 245 LPRINLTAEQTKAVGFGQR------VKFENIDQTYGQVRLFSEHGQ--FLGVAEIT 292
>gi|251797394|ref|YP_003012125.1| tRNA pseudouridine synthase B [Paenibacillus sp. JDR-2]
gi|247545020|gb|ACT02039.1| tRNA pseudouridine synthase B [Paenibacillus sp. JDR-2]
Length = 300
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 105/199 (52%), Gaps = 36/199 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII + KPA +SH+VVA ++RI+R+++ GH+GTLDP VTG L +C+ R+TR+V+ Q
Sbjct: 3 GIIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQER 62
Query: 163 GKEYVCVARL------HDKVPDVA-----------KVARALEALTGAVFQRPPLISAVK- 204
K Y V +L D V +V + L++ G + Q PP+ SAVK
Sbjct: 63 PKAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVLQVLQSFVGEIDQVPPMFSAVKV 122
Query: 205 ----------------RQLRIRTIYESKLL--EYDVDRHLVVFWISCEAGTYVRTMCVHL 246
R+ R TI++ LL + D D+ F + C GTY+RT+CV +
Sbjct: 123 DGKRLYELAREGKTVERKSRKVTIHQIDLLNVDLDADKPRFAFSVICSKGTYIRTLCVDI 182
Query: 247 GLILGVGGHMQELRRVRSG 265
G LGV M EL R SG
Sbjct: 183 GRALGVPAAMAELTRTMSG 201
>gi|77551909|gb|ABA94706.1| Kinetochore protein, putative [Oryza sativa Japonica Group]
gi|125577684|gb|EAZ18906.1| hypothetical protein OsJ_34446 [Oryza sativa Japonica Group]
Length = 142
Score = 114 bits (284), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/68 (82%), Positives = 60/68 (88%)
Query: 118 VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP 177
VVAWIKR+LRV KTGHSGTLDPKVTGNLIVC+D ATRLVKSQQGAGKEY CVAR H VP
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAAVP 118
Query: 178 DVAKVARA 185
D A+ AR+
Sbjct: 119 DTARDARS 126
>gi|138894786|ref|YP_001125239.1| tRNA pseudouridine synthase B [Geobacillus thermodenitrificans
NG80-2]
gi|196247590|ref|ZP_03146292.1| tRNA pseudouridine synthase B [Geobacillus sp. G11MC16]
gi|189036483|sp|A4IME0.1|TRUB_GEOTN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|134266299|gb|ABO66494.1| tRNA pseudouridine 55 synthase [Geobacillus thermodenitrificans
NG80-2]
gi|196212374|gb|EDY07131.1| tRNA pseudouridine synthase B [Geobacillus sp. G11MC16]
Length = 302
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 141/298 (47%), Gaps = 58/298 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L+KP +SH+ VA ++R+L ++K GH+GTLDP V+G L +C+ +ATR+ + GA
Sbjct: 3 GVLLLNKPKGMTSHDCVAKVRRLLGIKKVGHTGTLDPNVSGVLPICLGKATRIAEFLTGA 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y + + D+ A++ +LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGAATSTEDADGDIIAVQTVDRTIARAEIEAVFRSLTGDIEQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLEYDVDRHLVV-------FWISCEAGTYVR 240
R R TIYE +LL+ +R V F + C GTYVR
Sbjct: 123 VNGKKLYEYARAGIEVERPTRRVTIYELELLD---EREQFVGETVSFRFRVMCSKGTYVR 179
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
T+ V +G LG HM +L R SG D VT+ +V + + + +++
Sbjct: 180 TLAVTIGERLGYPAHMSDLIRTASGPFQLAD-CVTLEEV-------ERRAADGTVDALLI 231
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
P+E L + + D + GA L +P L+ E+ V+L+T + EA+AL
Sbjct: 232 PIEQALFHLPKYEISDKVAEKVKNGALLRLPAFLQ-----ELDGPVLLVTPEREAMAL 284
>gi|303253709|ref|ZP_07339846.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307247611|ref|ZP_07529654.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307261098|ref|ZP_07542777.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|302647434|gb|EFL77653.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855881|gb|EFM88041.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306869230|gb|EFN01028.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 305
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 142/297 (47%), Gaps = 48/297 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDILQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L ++ A++ ALE G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGERTDTSDAEGQVVETRAVNIGEAEIITALEQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E + +EY V +L + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELRFIEY-VTPYLTL-EVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LG G H+ LRR+ N + M D Q L +N E L + ++PL+ + S
Sbjct: 190 VLGCGAHVTVLRRLAVA----NYPIEAMMSYADLQNLSENQPLEE-LDKYLLPLDTAVES 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
+L + A+ +G + ++FEN+ ++ +V L + + LG+AE+TT
Sbjct: 245 LPKLNLTAEQTKAVGFGQR------VKFENNDQIYGQVRLFSHNMQ--FLGVAEITT 293
>gi|386725628|ref|YP_006191954.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus K02]
gi|384092753|gb|AFH64189.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus K02]
Length = 305
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 133/266 (50%), Gaps = 46/266 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA ++RIL++++ GH+GTLDP+VTG L +CI RATRLV+ Q
Sbjct: 5 GILPVWKPAGFTSHDVVAKVRRILKIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQEL 64
Query: 163 GKEYVCVARL------HDKVPDVAK-------------VARALEALTGAVFQRPPLISAV 203
KEY RL D V + V A+ TG + Q PP+ SAV
Sbjct: 65 PKEYEATLRLGIATDTEDLSGSVLRTEDGLSLKLTPEEVTEAIHRFTGEIEQVPPMYSAV 124
Query: 204 K-----------------RQLRIRTIYESKLLEYDV--DRHLVVFWISCEAGTYVRTMCV 244
K R+ R TI++ ++L D D V F + C GTY+RT+CV
Sbjct: 125 KVDGKRLYDLARQGVEVERKARRVTIHKIEVLSTDWTGDYPEVRFRVLCSKGTYIRTLCV 184
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
+G +GV M EL R +G + ++ +T+ + + Q E L++ ++P+E
Sbjct: 185 DIGAAIGVPAVMAELVRTSTGQI-RAESCLTLEQIEELQ-------REGLLQQRLVPMER 236
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMI 330
L+ +++ + G K+ +
Sbjct: 237 ALSHLPEVLLNEVQTQKALQGQKIRV 262
>gi|307245497|ref|ZP_07527584.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307254451|ref|ZP_07536288.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258910|ref|ZP_07540641.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306853556|gb|EFM85774.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862592|gb|EFM94549.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866934|gb|EFM98791.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 305
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 48/297 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDILQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDK---------VPDV-------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L ++ V ++ A++ ALE G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGERTDTSDAEGQVVEIRAVNIGEAEIITALEQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E + +EY + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELRFIEYAAP--YLTLEVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LG G H+ LRR+ N + M D Q L +N E L + ++PL+ + S
Sbjct: 190 VLGCGAHVTVLRRLAVA----NYPIEAMMSYADLQNLSENQPLEE-LDKYLLPLDTAVES 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
+L + A+ +G + ++FEN+ ++ +V L + + LG+AE+TT
Sbjct: 245 LPKLNLTAEQTKAVGFGQR------VKFENNDQIYGQVRLFSHNMQ--FLGVAEITT 293
>gi|337750000|ref|YP_004644162.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus KNP414]
gi|379722851|ref|YP_005314982.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus 3016]
gi|336301189|gb|AEI44292.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus KNP414]
gi|378571523|gb|AFC31833.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus 3016]
Length = 305
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 133/266 (50%), Gaps = 46/266 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA ++RIL++++ GH+GTLDP+VTG L +CI RATRLV+ Q
Sbjct: 5 GILPVWKPAGFTSHDVVAKVRRILKIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQEL 64
Query: 163 GKEYVCVARL------HDKVPDVAK-------------VARALEALTGAVFQRPPLISAV 203
KEY RL D V + V A+ TG + Q PP+ SAV
Sbjct: 65 PKEYEATLRLGIATDTEDLSGSVLRTEDGLSLKLTPEEVTEAIHRFTGEIEQVPPMYSAV 124
Query: 204 K-----------------RQLRIRTIYESKLLEYDV--DRHLVVFWISCEAGTYVRTMCV 244
K R+ R TI++ ++L D D V F + C GTY+RT+CV
Sbjct: 125 KVDGKRLYDLARQGVEVERKARRVTIHKIEVLSTDWTGDYPEVRFRVLCSKGTYIRTLCV 184
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
+G +GV M EL R +G + ++ +T+ + + Q E L++ ++P+E
Sbjct: 185 DIGAAIGVPAVMAELVRTSTGQI-RAESCLTLEQIEELQ-------REGLLQQRLVPMER 236
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMI 330
L+ +++ + G K+ +
Sbjct: 237 ALSHLPEVLLNEVQTQKALQGQKIRV 262
>gi|407474009|ref|YP_006788409.1| tRNA pseudouridine synthase B [Clostridium acidurici 9a]
gi|407050517|gb|AFS78562.1| tRNA pseudouridine synthase B [Clostridium acidurici 9a]
Length = 306
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 140/295 (47%), Gaps = 51/295 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP+ +SH+VV++I++ ++K GH+GTLDP G L +CI +ATR+ +
Sbjct: 3 GIINVLKPSGMTSHDVVSFIRKTFNMKKVGHTGTLDPNAAGVLPICIGKATRVAEYFNDF 62
Query: 163 GKEYVCVARL------HDKVPDVA----------KVARALEALTGAVFQRPPLISAVKRQ 206
K Y L DK + ++ + G + Q PP+ SAVKR
Sbjct: 63 NKTYRGQLTLGYSTDTQDKYGVILENSNIEVTEEEIVNVFDKFKGDIDQIPPMYSAVKRN 122
Query: 207 LRIRTIYE--------------SKLLEYDVDRHL----VVFWISCEAGTYVRTMCVHLGL 248
I+ +YE K+ D+ R+ ++F + C GTYVRT+C +G
Sbjct: 123 -GIK-LYELAREGKTIEREKRRVKIYSLDIIRNYDNKKILFDVECSKGTYVRTLCNDIGE 180
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LG GHM L R + G D T+ +++ N+++ L ++MP++ L
Sbjct: 181 QLGTLGHMSFLIRTKVGNFSIKD-AYTLEEII-------NFKENNTLEDILMPIDTALLQ 232
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEM 363
Y+ +V+ + AI G K ++ N+I+ +E + GE + +GI +
Sbjct: 233 YRDIVLNEEYFQAIKNGLK------VKLNNNIQRNKEELFRIYCGE-IFIGIGTI 280
>gi|315648091|ref|ZP_07901192.1| tRNA pseudouridine synthase B [Paenibacillus vortex V453]
gi|315276737|gb|EFU40080.1| tRNA pseudouridine synthase B [Paenibacillus vortex V453]
Length = 303
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 36/207 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA ++ ILR+++ GH+GTLDP+VTG L +C+ RATR+V+ Q
Sbjct: 6 GILAVHKPAGWTSHDVVAKVRGILRMKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQEL 65
Query: 163 GKEYVCVARL------HDKVPDVAKVA-----------RALEALTGAVFQRPPLISAVK- 204
KEY V RL D V + A AL++ G + Q PP+ SAVK
Sbjct: 66 PKEYHAVLRLGYSTDTEDITGSVTETADEVHVTKNEAIEALQSFMGPISQVPPMYSAVKI 125
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL--VVFWISCEAGTYVRTMCVHL 246
R+ R TI+E ++ ++D + + F + C GTY+RT+CV +
Sbjct: 126 NGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTDISFRVLCSKGTYIRTLCVDI 185
Query: 247 GLILGVGGHMQELRRVRSGILGENDNM 273
G LG+ M +L R S + E +
Sbjct: 186 GRKLGLPSVMVKLERTVSAGITEQQCL 212
>gi|126652565|ref|ZP_01724730.1| TruB [Bacillus sp. B14905]
gi|126590693|gb|EAZ84809.1| TruB [Bacillus sp. B14905]
Length = 305
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 134/306 (43%), Gaps = 60/306 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L K +SH+ V +++ILR +K GH+GTLDP V G L +CI +ATR+ + A
Sbjct: 5 GILPLWKERGMTSHDCVFKLRKILRTKKVGHTGTLDPGVEGVLPICIGQATRIAEYLTDA 64
Query: 163 GKEYVCVARLHDKVP-------------DVAKVAR-----ALEALTGAVFQRPPLISAVK 204
GK Y + + V KV+R L +LTG + Q PP+ SAVK
Sbjct: 65 GKTYEAIISIGRTTTTEDAEGETVAEDHSVKKVSREQLQEVLASLTGVIEQTPPMFSAVK 124
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R R TIY +LL+ Y+ I C GTY+RT+
Sbjct: 125 VNGKRLYEYARKGETVERPTRQVTIYALELLDDHESYEGQEITFPVRIDCSKGTYIRTLA 184
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV---MDAQWLYDNYRDEAYLRRVIM 300
V +G LG HM+EL R SG DN T+ V MDA+ + I+
Sbjct: 185 VQIGEALGYPAHMKELVRTASGTF-TRDNCFTLAQVAELMDAEQ----------VTTCIL 233
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
P+E LT Y + + I G L LL+ + I G G+AVA+
Sbjct: 234 PVEYALTDYPYIEITSAIEKEIFNGQVLPADTLLKIHDKIVFG-------INGKAVAVYQ 286
Query: 361 AEMTTA 366
A T A
Sbjct: 287 AHPTKA 292
>gi|407477526|ref|YP_006791403.1| tRNA pseudouridine synthase [Exiguobacterium antarcticum B7]
gi|407061605|gb|AFS70795.1| tRNA pseudouridine synthase [Exiguobacterium antarcticum B7]
Length = 302
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 124/273 (45%), Gaps = 63/273 (23%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKPA +SH+ V ++R+ + +K GH+GTLDP+VTG L +C+ RAT+L +
Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64
Query: 163 GKEYVC--------------------VARLHDKVPDVAKVARALEALTGAVFQRPPLISA 202
GK Y + D + D + LE LTG + Q PP SA
Sbjct: 65 GKTYAAEVTIGYATTTEDAHGETVHETPVISDSISD-QMIDEVLEQLTGQIQQTPPYYSA 123
Query: 203 VK-----------------RQLRIRTI----------YESKLLEYDVDRHLVVFWISCEA 235
VK R RI I +E L + ++ I+C
Sbjct: 124 VKVNGKKLYEYARKGIEVERPTRIVQIDALERTSEVTFEDGLCRFRIE-------IACGK 176
Query: 236 GTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYL 295
GTY+RT+ V +G LG HM +LRR SG + E D VT+ + + + +
Sbjct: 177 GTYIRTLAVEIGERLGYAAHMSDLRRTSSGAMSEVDA-VTLATLEACETIEERM------ 229
Query: 296 RRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
+ ++P+E ++ + RL V T + GAKL
Sbjct: 230 -QYVLPIEQVIQKWPRLTVDAETAARVLNGAKL 261
>gi|169827171|ref|YP_001697329.1| tRNA pseudouridine synthase B [Lysinibacillus sphaericus C3-41]
gi|168991659|gb|ACA39199.1| tRNA pseudouridine synthase B [Lysinibacillus sphaericus C3-41]
Length = 303
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 130/295 (44%), Gaps = 54/295 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L K +SH+ V +++ILR +K GH+GTLDP V G L +CI +ATR+ + A
Sbjct: 3 GILPLWKERGMTSHDCVFKLRKILRTKKVGHTGTLDPGVEGVLPICIGQATRIAEYLTDA 62
Query: 163 GKEYVCVARLHDKVP-------------DVAKVAR-----ALEALTGAVFQRPPLISAVK 204
GK Y + + + K +R L +LTG + Q PP+ SAVK
Sbjct: 63 GKTYEAIISIGRTTTTEDAEGETVAQDQTIKKFSREQLQEVLASLTGIIEQTPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R R TIY +LL+ Y+ I+C GTY+RT+
Sbjct: 123 VNGKRLYEYARKGETVERPTRQVTIYALELLDDNESYEGQEITFPVRIACSKGTYIRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM+EL R SG DN T+ V + DE + I+P+E
Sbjct: 183 VQIGEELGYPAHMKELVRTASGTF-TRDNCFTLAQVAELM-------DEEQVATCILPVE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
LT Y + + I G L LL+ + I G G+AVA+
Sbjct: 235 YALTDYPYIEITSANEKEIFNGQVLPADTLLKIHDKIVFG-------INGKAVAV 282
>gi|32033694|ref|ZP_00133989.1| COG0130: Pseudouridine synthase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208123|ref|YP_001053348.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303249644|ref|ZP_07335849.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252192|ref|ZP_07534090.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|189030152|sp|A3N007.1|TRUB_ACTP2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|126096915|gb|ABN73743.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|302651456|gb|EFL81607.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860336|gb|EFM92351.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 305
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 138/297 (46%), Gaps = 48/297 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDILQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L + A++ ALE G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGKRTDTSDAEGQVVETRAVNVGEAEIITALEQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E + +EY + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELRFIEYAAP--YLTLEVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LG G H+ LRR+ N + M D Q L +N E L + ++PL+ + S
Sbjct: 190 VLGCGAHVTVLRRLAVA----NYPIEAMMSYADLQNLSENQPLEE-LDKYLLPLDTAVES 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
+L + A+ +G + ++FEN+ ++ +V L + + LG+AE+TT
Sbjct: 245 LPKLNLTAEQTKAVGFGQR------VKFENNDQIYGQVRLFSHNMQ--FLGVAEITT 293
>gi|384045255|ref|YP_005493272.1| TRNA pseudouridine synthase B [Bacillus megaterium WSH-002]
gi|345442946|gb|AEN87963.1| TRNA pseudouridine synthase B [Bacillus megaterium WSH-002]
Length = 305
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 40/216 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KPA +SH+ V ++++LR +K GH+GTLDP VTG L +CI RAT++V+ GA
Sbjct: 3 GVLVLHKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTGA 62
Query: 163 GKEYVCVARL---------------HDKVPDV---AKVARALEALTGAVFQRPPLISAVK 204
K Y L KV D A++ L ++TG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDSSGEVVEEKKVADSFSRAQIEEVLSSMTGELQQVPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R IY +LL+ ++ ++ F ++C GTYVRT+
Sbjct: 123 VKGKKLYEYARQGIEVERPVRTIHIYNFELLDNRATFEGEQISFKFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
V +G LG HM L+R SG D M T D+
Sbjct: 183 VMIGEALGYPSHMSYLQRTGSGQFSLEDCM-TFEDI 217
>gi|56419801|ref|YP_147119.1| tRNA pseudouridine synthase B [Geobacillus kaustophilus HTA426]
gi|62901181|sp|Q5L0I5.1|TRUB_GEOKA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|56379643|dbj|BAD75551.1| tRNA pseudouridine 5S synthase [Geobacillus kaustophilus HTA426]
Length = 285
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 128/271 (47%), Gaps = 47/271 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L+KP +SH+ VA ++R+L V+K GH+GTLDP V+G L +C+ +ATR+ + G
Sbjct: 3 GVLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGT 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y + AR D+ A++ ++LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLL----EYDVDRHLVVFWISCEAGTYVRTMC 243
R R TIYE +LL ++ + F ++C GTYVRT+
Sbjct: 123 VGGKKLYEYARAGIEVERPTRRVTIYELELLDEREQFFGETVSFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM +L R SG ++ VT DV + D D +++P+E
Sbjct: 183 VMIGERLGYPAHMSDLIRTASGPF-RLEDCVTFEDV--ERRAADGTADA-----LLIPIE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
L + + D + GA L +P L
Sbjct: 235 RALFHLPKYEINDKVAEKVKNGALLRLPAFL 265
>gi|169350218|ref|ZP_02867156.1| hypothetical protein CLOSPI_00962 [Clostridium spiroforme DSM 1552]
gi|169293001|gb|EDS75134.1| tRNA pseudouridine synthase B [Clostridium spiroforme DSM 1552]
Length = 286
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 135/288 (46%), Gaps = 58/288 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII ++KP+ +SH+VV +++IL+ +K GH GTLDP TG L+VC+++AT++++
Sbjct: 9 GIILINKPSGMTSHDVVNKLRKILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSD 68
Query: 163 GKEYVCVARLHDKVPDVAKVARALE-----------------ALTGAVFQRPPLISAVK- 204
KEY+ L + LE G Q+PP+ SA+K
Sbjct: 69 SKEYIATLSLGTSTDTYDASGKVLEKKEYSGLDKQVIIDCFNNFVGKQIQKPPIYSAIKV 128
Query: 205 --------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
++ R + + L D+ +L+ F + C GTY+R++C L L
Sbjct: 129 NGKKLYEYARNGEEVEIPTREVEINYLEIMDIKDNLIKFKVGCSKGTYIRSLCFDLAKAL 188
Query: 251 GVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYK 310
G GHMQ+L R +SG + T+ + + + Y + LE L SY+
Sbjct: 189 GYPGHMQDLIRTKSGNF-SIEKCYTLEQIENGDFEY-------------LSLEEALNSYR 234
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
++V+++ I Y K + ++DI+ E+VV+ + +A+
Sbjct: 235 KIVIEN---EKIVYHGK-------KIKSDID--EQVVICNKNNQVLAM 270
>gi|421860634|ref|ZP_16292740.1| pseudouridine synthase [Paenibacillus popilliae ATCC 14706]
gi|410829820|dbj|GAC43177.1| pseudouridine synthase [Paenibacillus popilliae ATCC 14706]
Length = 305
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 111/209 (53%), Gaps = 38/209 (18%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G++ + KPA +SH+VVA ++R++R ++ GH+GTLDP+V G L +C+ RATRLV+ Q
Sbjct: 6 HGVLPVWKPAGWTSHDVVAKVRRLIREKRIGHTGTLDPQVVGVLPLCVGRATRLVEYLQE 65
Query: 162 AGKEYVCVARL------HDKVPDV-----------AKVARALEALTGAVFQRPPLISAVK 204
KEY RL D +V A +A AL + G + Q PP+ SAVK
Sbjct: 66 MPKEYEATLRLGVSTDTEDMSGEVVERADASHVTEAMIAEALLSFIGPIEQVPPMYSAVK 125
Query: 205 -----------------RQLRIRTIYESKLLEY---DVDRHLVVFWISCEAGTYVRTMCV 244
R+ R TI+ KL+ DV+ V F + C GTY+RT+CV
Sbjct: 126 VNGKRLYELAREGKTVERKPRQVTIHHIKLIGLRLGDVEPE-VRFRVQCSKGTYIRTLCV 184
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
+G LGV M +L R RS G+ D++
Sbjct: 185 DIGRKLGVPATMAKLIRTRSANFGQEDSV 213
>gi|374997041|ref|YP_004972540.1| tRNA pseudouridine 55 synthase [Desulfosporosinus orientis DSM 765]
gi|357215407|gb|AET70025.1| tRNA pseudouridine 55 synthase [Desulfosporosinus orientis DSM 765]
Length = 294
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 98/198 (49%), Gaps = 35/198 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP +S +VV WI+++L+++K GH+GTLDP V G L +C+ + TRL +
Sbjct: 3 GIINVLKPPGMTSSDVVVWIRKVLKIKKVGHTGTLDPGVAGVLPICVGKGTRLAEFITDQ 62
Query: 163 GKEYVCVARL---------HDKV------PDVAK--VARALEALTGAVFQRPPLISAVK- 204
GKEY+ + KV P + K V L G + Q PP+ SAV+
Sbjct: 63 GKEYIAEVTFGVSTDTQDSYGKVIEETSSPKLRKSDVEAVLPKFQGEISQIPPMFSAVRK 122
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL-VVFWISCEAGTYVRTMCVHLG 247
R LR TI+ L ++ H + I C GTY+RT+C LG
Sbjct: 123 EGKHLYEYARQGISVERALRQVTIHRLSLDKWYEGNHPKAILTIECSKGTYIRTICHDLG 182
Query: 248 LILGVGGHMQELRRVRSG 265
LG G HM L RVRSG
Sbjct: 183 QALGCGAHMSYLVRVRSG 200
>gi|254974859|ref|ZP_05271331.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-66c26]
gi|255092246|ref|ZP_05321724.1| tRNA pseudouridine synthase B [Clostridium difficile CIP 107932]
gi|255313986|ref|ZP_05355569.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-76w55]
gi|255516666|ref|ZP_05384342.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-97b34]
gi|255649765|ref|ZP_05396667.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-37x79]
gi|260682921|ref|YP_003214206.1| tRNA pseudouridine synthase B [Clostridium difficile CD196]
gi|260686519|ref|YP_003217652.1| tRNA pseudouridine synthase B [Clostridium difficile R20291]
gi|306519870|ref|ZP_07406217.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-32g58]
gi|384360509|ref|YP_006198361.1| tRNA pseudouridine synthase B [Clostridium difficile BI1]
gi|260209084|emb|CBA62234.1| tRNA pseudouridine synthase B [Clostridium difficile CD196]
gi|260212535|emb|CBE03491.1| tRNA pseudouridine synthase B [Clostridium difficile R20291]
Length = 301
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 44/290 (15%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
II++ KP +SH+VV+ +++IL ++K GH+GTLDP +G L +CI +AT++ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 164 KEYVCVARL------HDKVPDVAK-----------VARALEALTGAVFQRPPLISAVK-- 204
K Y+C L +D ++ K + RA + G + Q PP+ SA+K
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 205 -----------RQ----LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
RQ L+ R + + + + V+F++ C GTYVR++C +G
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDIGEY 183
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G HM L R SG + DN +T+ ++ + Y+N + YL ++ +L S+
Sbjct: 184 LGCGAHMSFLNRTSSGKF-DLDNSITLEEL---ELFYENKTLDKYL----YDIDYVLDSF 235
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+V+ + G + L+ N+ + +EVV + + + LG
Sbjct: 236 NYVVLNPNAIKYYSNGGSIDDKRFLK--NNFDKDDEVVRVYSTDNFLGLG 283
>gi|422854032|ref|ZP_16900696.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK160]
gi|325696837|gb|EGD38725.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK160]
Length = 292
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIHQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|149047807|gb|EDM00423.1| rCG37748 [Rattus norvegicus]
Length = 107
Score = 112 bits (280), Expect = 6e-22, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 68/85 (80%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G +NLDKP+NPSS +VVAWI++ILRVEKTG+SGTLD K TG LIVCI+RA RL+KSQ A
Sbjct: 23 GFLNLDKPSNPSSCDVVAWIQQILRVEKTGYSGTLDSKETGCLIVCIERAIRLLKSQHRA 82
Query: 163 GKEYVCVARLHDKVPDVAKVARALE 187
GK YV + LH + + +++RALE
Sbjct: 83 GKVYVGIVWLHKAIEEGTQLSRALE 107
>gi|406664553|ref|ZP_11072328.1| tRNA pseudouridine synthase B [Bacillus isronensis B3W22]
gi|405387401|gb|EKB46825.1| tRNA pseudouridine synthase B [Bacillus isronensis B3W22]
Length = 303
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 137/301 (45%), Gaps = 54/301 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L K +SH+ V +++IL+ +K GH+GTLDP V G L +CI +ATR+ + A
Sbjct: 3 GILPLWKERGMTSHDCVFKLRKILKTKKVGHTGTLDPGVEGVLPICIGQATRIAEYLTDA 62
Query: 163 GKEYVCVARLH-------------DKVPDVAKVAR-----ALEALTGAVFQRPPLISAVK 204
GK Y V + ++ D R AL+ LTG + Q PP+ SAVK
Sbjct: 63 GKTYEAVVSIGRTTTTEDAEGETVEQNTDFKSFTREEILHALQTLTGEIEQTPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R R TIYE +LL+ ++ + I C GTY+RT+
Sbjct: 123 VNGKRLYEYARAGQTVERPTRKITIYELELLDDAQTFEGEEVTFSIRIKCSKGTYIRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM EL R SG DN T+ ++ + + + + E +L +P+E
Sbjct: 183 VQIGEALGYPAHMHELVRTASGTF-TKDNCFTLAEIAE---MMEAGKQEKFL----LPVE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEM 363
L+ Y + + + I G L + LL + I G E G A A+ IA
Sbjct: 235 YALSDYPYVEITEDIEKQIFNGQVLPMHTLLTEHDKIVYGVE-------GRAFAVYIAHP 287
Query: 364 T 364
T
Sbjct: 288 T 288
>gi|294500894|ref|YP_003564594.1| tRNA pseudouridine synthase B [Bacillus megaterium QM B1551]
gi|294350831|gb|ADE71160.1| tRNA pseudouridine synthase B [Bacillus megaterium QM B1551]
Length = 305
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 40/216 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KPA +SH+ V ++++LR +K GH+GTLDP VTG L +CI RAT++V+ GA
Sbjct: 3 GVLVLHKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTGA 62
Query: 163 GKEYVCVARL---------------HDKVPDV---AKVARALEALTGAVFQRPPLISAVK 204
K Y L KV D A++ L ++TG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDSSGEVVEEKKVEDSFSRAQIEEVLSSMTGELQQVPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R IY +LL+ ++ ++ F ++C GTYVRT+
Sbjct: 123 VKGKKLYEYARQGIEVERPVRTIHIYSFELLDDRSTFEGEQISFKFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
V +G LG HM L+R SG D VT D+
Sbjct: 183 VMIGEALGYPSHMSYLQRTGSGQFSLED-CVTFEDI 217
>gi|329929279|ref|ZP_08283032.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF5]
gi|328936648|gb|EGG33091.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF5]
Length = 303
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 37/201 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA ++ ++R+++ GH+GTLDP+VTG L +C+ RATR+V+ Q
Sbjct: 6 GILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQEL 65
Query: 163 GKEYVCVARL------HDKVPDVAKVA-----------RALEALTGAVFQRPPLISAVK- 204
KEY V RL D +V + A AL++ TG + Q PP+ SAVK
Sbjct: 66 PKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFTGQISQVPPMYSAVKI 125
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL--VVFWISCEAGTYVRTMCVHL 246
R+ R TI+E ++ ++D + + F + C GTY+RT+CV +
Sbjct: 126 NGKRLYELAREGKTVERKSRTVTIHEIEMTDFDPEGEYTEISFRVLCSKGTYIRTLCVDI 185
Query: 247 GLILGVGGHMQEL-RRVRSGI 266
G LG+ M +L R + +GI
Sbjct: 186 GRKLGLPSVMVKLVRTISAGI 206
>gi|418966270|ref|ZP_13518018.1| tRNA pseudouridine synthase B [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340650|gb|EID18943.1| tRNA pseudouridine synthase B [Streptococcus constellatus subsp.
constellatus SK53]
Length = 292
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKVGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDVAK------------VARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ + + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEVLIDEAIESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 INGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEKARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG+ LG+ HM +L R+ S + D +
Sbjct: 183 DLGVKLGLASHMSQLTRISSAGMSLEDAL 211
>gi|165976053|ref|YP_001651646.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307249840|ref|ZP_07531816.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|165876154|gb|ABY69202.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306858142|gb|EFM90222.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 305
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 48/297 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP G L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDILQKVKRLFQANKAGHTGALDPLANGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L ++ A++ ALE G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGERTDTSDAEGQVVETRAVNIGEAEIITALEQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E + +EY V +L + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELRFIEY-VTPYLTL-EVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LG G H+ LRR+ N + M D Q L +N E L + ++PL+ + S
Sbjct: 190 VLGCGAHVTVLRRLAVA----NYPIEAMMSYADLQNLSENQPLEE-LDKYLLPLDTAVES 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
+L + A+ +G + ++FEN+ ++ +V L + + LG+AE+TT
Sbjct: 245 LPKLNLTAEQTKAVGFGQR------VKFENNDQIYGQVRLFSHNMQ--FLGVAEITT 293
>gi|153207287|ref|ZP_01946051.1| tRNA pseudouridine synthase B [Coxiella burnetii 'MSU Goat Q177']
gi|165918801|ref|ZP_02218887.1| tRNA pseudouridine synthase B [Coxiella burnetii Q321]
gi|212218231|ref|YP_002305018.1| tRNA pseudouridine synthase B [Coxiella burnetii CbuK_Q154]
gi|120576775|gb|EAX33399.1| tRNA pseudouridine synthase B [Coxiella burnetii 'MSU Goat Q177']
gi|165917525|gb|EDR36129.1| tRNA pseudouridine synthase B [Coxiella burnetii Q321]
gi|212012493|gb|ACJ19873.1| tRNA pseudouridine synthase B [Coxiella burnetii CbuK_Q154]
Length = 309
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 139/293 (47%), Gaps = 53/293 (18%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
KRP VD G++ LDKP +S+E + +KR+ +K GH+G+LDP TG L +C+
Sbjct: 10 FKRP-VD----GVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICLGE 64
Query: 152 ATRLVKSQQGAGKEYVCVARLHDK---------------VPDVAKVA--RALEALTGAVF 194
AT+ + A K Y RL + +P + K A + L A G +
Sbjct: 65 ATKFSQFLLEADKSYSVKGRLGVRTASGDSESHILTERPIPKLTKRALEKTLSAFRGVID 124
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q P + SA+K R+ R TIYE LL++D + + ++ C GT
Sbjct: 125 QTPSMYSALKHKGQPLYKLARQGIEVERKTRQVTIYELTLLDWDNES--IELYVHCSKGT 182
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ +G LG G H+ LRR+R E+ + H ++ ++ NY L R
Sbjct: 183 YIRTLLDDVGEALGCGAHVVALRRLRVAHYHEDQMIKLAH--LEREYDKANYTG---LDR 237
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP-----GLLRF--ENDIEVG 343
++PLE +++ + + + +T + G +M+P G +R +ND +G
Sbjct: 238 YLLPLETMVSHFPAIKLSSSTAFYLQQGQAVMVPNAPTHGFVRLRDQNDQFIG 290
>gi|322385420|ref|ZP_08059065.1| tRNA pseudouridine synthase B [Streptococcus cristatus ATCC 51100]
gi|417921245|ref|ZP_12564738.1| tRNA pseudouridine synthase B [Streptococcus cristatus ATCC 51100]
gi|321270679|gb|EFX53594.1| tRNA pseudouridine synthase B [Streptococcus cristatus ATCC 51100]
gi|342834579|gb|EGU68845.1| tRNA pseudouridine synthase B [Streptococcus cristatus ATCC 51100]
Length = 292
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL +K GH GTLDP V G L + I +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAIGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + ND +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLNDAL 211
>gi|422858696|ref|ZP_16905346.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1057]
gi|327459839|gb|EGF06179.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1057]
Length = 292
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|393201677|ref|YP_006463519.1| pseudouridine synthase [Solibacillus silvestris StLB046]
gi|327441008|dbj|BAK17373.1| pseudouridine synthase [Solibacillus silvestris StLB046]
Length = 303
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 136/301 (45%), Gaps = 54/301 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L K +SH+ V +++IL+ +K GH+GTLDP V G L +CI +ATR+ + A
Sbjct: 3 GILPLWKERGMTSHDCVFKLRKILKTKKVGHTGTLDPGVEGVLPICIGQATRIAEYLTDA 62
Query: 163 GKEYVCVARLH-------------DKVPDVAKVAR-----ALEALTGAVFQRPPLISAVK 204
GK Y V + ++ D R AL+ LTG + Q PP+ SAVK
Sbjct: 63 GKTYEAVVSIGRTTTTEDAEGETVEQNTDFKSFTREEILHALQTLTGEIEQTPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R R TIYE +LL+ ++ + I C GTY+RT+
Sbjct: 123 VNGKRLYEYARAGQTVERPTRKITIYELELLDDAQTFEGEEVTFSIRIKCSKGTYIRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM EL R SG DN T+ ++ + + + E +L +P+E
Sbjct: 183 VQIGEALGCPAHMHELVRTASGTF-TKDNCFTLAEIAE---MMEAGEQEKFL----LPVE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEM 363
L+ Y + + + I G L + LL + I G E G A A+ IA
Sbjct: 235 YALSDYPYVEITEDIEKQIFNGQVLPMHTLLTEHDKIVYGVE-------GRAFAVYIAHP 287
Query: 364 T 364
T
Sbjct: 288 T 288
>gi|387771663|ref|ZP_10127821.1| tRNA pseudouridine synthase B [Haemophilus parahaemolyticus HK385]
gi|386908523|gb|EIJ73216.1| tRNA pseudouridine synthase B [Haemophilus parahaemolyticus HK385]
Length = 305
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 50/298 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ R K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGVSSNDIMQKVKRLFRANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L ++ A + AL G + Q P + SA+K
Sbjct: 72 SDKRYFVTAKLGERTDTSDAEGQVVETREVNMLEADILAALPQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E K +EY + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELKFVEYQAP--YLSLEVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMV-TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
+LG G H+ LRR L D V M + + Q L +++ + L R+++P++ +
Sbjct: 190 VLGCGAHVSVLRR-----LAVADYPVKEMMPIEELQLLAESFPQQE-LDRLLLPMDTAVA 243
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
S L + ++ A+ +G + ++FEN ++ V L + + LG+AE+T+
Sbjct: 244 SLAALNLTESQTKAVKFGQR------VKFENSEQIYGLVRLFSNTQQ--FLGVAEITS 293
>gi|295706240|ref|YP_003599315.1| tRNA pseudouridine synthase B [Bacillus megaterium DSM 319]
gi|294803899|gb|ADF40965.1| tRNA pseudouridine synthase B [Bacillus megaterium DSM 319]
Length = 305
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 40/216 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KPA +SH+ V ++++LR +K GH+GTLDP VTG L +CI RAT++V+ GA
Sbjct: 3 GVLILHKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTGA 62
Query: 163 GKEYVCVARL---------------HDKVPDV---AKVARALEALTGAVFQRPPLISAVK 204
K Y L KV D A++ L ++TG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDSSGEVVEEKKVVDSFSRAQIEEVLSSMTGELQQVPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R IY +LL+ ++ ++ F ++C GTYVRT+
Sbjct: 123 VKGKKLYEYARQGIEVERPVRTIHIYNFELLDDRAAFEGEQISFKFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
V +G LG HM L+R SG D VT D+
Sbjct: 183 VMIGEALGYPSHMSYLQRTGSGQFSLED-CVTFEDI 217
>gi|422823810|ref|ZP_16871998.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK405]
gi|422826124|ref|ZP_16874303.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK678]
gi|422855744|ref|ZP_16902402.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1]
gi|422862832|ref|ZP_16909464.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK408]
gi|422865718|ref|ZP_16912343.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1058]
gi|324993137|gb|EGC25057.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK405]
gi|324995560|gb|EGC27472.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK678]
gi|327461405|gb|EGF07736.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1]
gi|327474040|gb|EGF19453.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK408]
gi|327489263|gb|EGF21056.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1058]
Length = 292
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPVSYEGEQARFCFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|422848896|ref|ZP_16895572.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK115]
gi|325689917|gb|EGD31921.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK115]
Length = 292
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|307244358|ref|ZP_07526471.1| tRNA pseudouridine synthase B [Peptostreptococcus stomatis DSM
17678]
gi|306492259|gb|EFM64299.1| tRNA pseudouridine synthase B [Peptostreptococcus stomatis DSM
17678]
Length = 300
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 42/259 (16%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
I N+ KPA +SH+VV +++IL ++K GH+GTLDP G L +C+ RAT++
Sbjct: 4 IFNIYKPAGMTSHDVVYKVRKILGIKKVGHTGTLDPDAVGVLPICVGRATKVCDLILNKD 63
Query: 164 KEYVCVARL------HDKVPDVAKV-----------ARALEALTGAVFQRPPLISAVK-- 204
K YVC L +D + +V RA+ + G + Q PP SA+K
Sbjct: 64 KTYVCDMVLGIETDTYDSSGQILEVRDPSGIGEEDLIRAMNSQLGPIDQLPPKYSALKVN 123
Query: 205 -------------RQLRI--RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
Q+++ R + K+ +D V F + C GTYVR++C LG +
Sbjct: 124 GKRMCDLVRAGKGDQIKLVARRVIIKKIDILSMDLPKVTFEVECSKGTYVRSICHDLGQL 183
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LGVG HM L R ++GI E D +++ D+ + +RDE L +E +L+
Sbjct: 184 LGVGAHMTGLIRSKTGIF-EIDKAISLEDL-------ERFRDENKLEENSWSVEDVLSDL 235
Query: 310 KRLVVKDTTVNAICYGAKL 328
+V+KD V G K+
Sbjct: 236 PYIVLKDNAVKYYSNGGKI 254
>gi|296451310|ref|ZP_06893050.1| tRNA pseudouridine synthase B [Clostridium difficile NAP08]
gi|296880338|ref|ZP_06904301.1| tRNA pseudouridine synthase B [Clostridium difficile NAP07]
gi|296259916|gb|EFH06771.1| tRNA pseudouridine synthase B [Clostridium difficile NAP08]
gi|296428579|gb|EFH14463.1| tRNA pseudouridine synthase B [Clostridium difficile NAP07]
Length = 301
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 44/290 (15%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
II++ KP +SH+VV+ +++IL ++K GH+GTLDP +G L +CI +AT++ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 164 KEYVCVARL------HDKVPDVAK-----------VARALEALTGAVFQRPPLISAVK-- 204
K Y+C L +D ++ K + RA + G + Q PP+ SA+K
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEEIKRAFDTQRGEINQLPPIYSALKVN 123
Query: 205 -----------RQ----LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
RQ L+ R + + + + V+F++ C GTYVR++C +G
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKNIKILSIKGNKVMFYVECSKGTYVRSICHDIGEY 183
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G HM L R SG + DN +T+ ++ + Y+N + YL ++ +L S+
Sbjct: 184 LGCGAHMSFLNRTSSGKF-DLDNSITLEEL---ELFYENKTLDKYL----YDIDYVLDSF 235
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+V+ + G + L+ N+ +E V + + + LG
Sbjct: 236 NYVVLNSNAIKYYSNGGSIDDKRFLK--NNFNKDDEFVRVYSTDNFLGLG 283
>gi|407692358|ref|YP_006817147.1| tRNA pseudouridine synthase B [Actinobacillus suis H91-0380]
gi|407388415|gb|AFU18908.1| tRNA pseudouridine synthase B [Actinobacillus suis H91-0380]
Length = 305
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 48/296 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDILQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L ++ ++ AL+ G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGERTDTSDAEGQVVETRAVNVSETEIISALDQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E + +EY + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELRFIEYSAP--YLTLEVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LG G H+ LRR+ N + M D Q L +N EA L + ++PL+ + S
Sbjct: 190 VLGCGAHVTVLRRLAVA----NYPIEAMMSYADLQNLSENQPLEA-LDQYLLPLDTAVES 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
++ + A+ +G + ++FEN + +V L + G+ LG+AE+T
Sbjct: 245 LPKINLTAEQTKAVGFGQR------VKFENIDQTYGQVRLFSEHGQ--FLGVAEIT 292
>gi|424788009|ref|ZP_18214771.1| tRNA pseudouridine(55) synthase [Streptococcus intermedius BA1]
gi|422113118|gb|EKU16867.1| tRNA pseudouridine(55) synthase [Streptococcus intermedius BA1]
Length = 292
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYVRAGQEVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|126698912|ref|YP_001087809.1| transfer RNA pseudouridine synthase B [Clostridium difficile 630]
gi|255306272|ref|ZP_05350443.1| tRNA pseudouridine synthase B [Clostridium difficile ATCC 43255]
gi|423082297|ref|ZP_17070889.1| tRNA pseudouridine synthase B [Clostridium difficile 002-P50-2011]
gi|423087689|ref|ZP_17076075.1| tRNA pseudouridine synthase B [Clostridium difficile 050-P50-2011]
gi|423090902|ref|ZP_17079188.1| tRNA pseudouridine synthase B [Clostridium difficile 70-100-2010]
gi|123067081|sp|Q18BH7.1|TRUB_CLOD6 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|115250349|emb|CAJ68171.1| transfer RNA pseudouridine synthase B [Clostridium difficile 630]
gi|357544003|gb|EHJ26009.1| tRNA pseudouridine synthase B [Clostridium difficile 050-P50-2011]
gi|357548623|gb|EHJ30483.1| tRNA pseudouridine synthase B [Clostridium difficile 002-P50-2011]
gi|357556017|gb|EHJ37639.1| tRNA pseudouridine synthase B [Clostridium difficile 70-100-2010]
Length = 301
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 44/290 (15%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
II++ KP +SH+VV+ +++IL ++K GH+GTLDP +G L +CI +AT++ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 164 KEYVCVARL------HDKVPDVAK-----------VARALEALTGAVFQRPPLISAVK-- 204
K Y+C L +D ++ K + RA + G + Q PP+ SA+K
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 205 -----------RQ----LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
RQ L+ R + + + + V+F++ C GTYVR++C +G
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDIGEY 183
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G HM L R SG + DN +T+ ++ + Y+N + YL ++ +L S+
Sbjct: 184 LGCGAHMSFLNRTSSGKF-DLDNSITLEEL---ELFYENKTLDKYL----YDIDYVLDSF 235
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+V+ + G + L+ N+ + +E V + + + LG
Sbjct: 236 NYVVLNPNAIKYYSNGGSIDDKRFLK--NNFDKDDEFVRVYSTDNFLGLG 283
>gi|212212200|ref|YP_002303136.1| tRNA pseudouridine synthase B [Coxiella burnetii CbuG_Q212]
gi|212010610|gb|ACJ17991.1| tRNA pseudouridine synthase B [Coxiella burnetii CbuG_Q212]
Length = 309
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 139/293 (47%), Gaps = 53/293 (18%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
KRP VD G++ LDKP +S+E + +KR+ +K GH+G+LDP TG L +C+
Sbjct: 10 FKRP-VD----GVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICLGE 64
Query: 152 ATRLVKSQQGAGKEYVCVARLHDK---------------VPDVAKVA--RALEALTGAVF 194
AT+ + A K Y RL + +P + K A + L A G +
Sbjct: 65 ATKFSQFLLEADKSYSVKGRLGVRTASGDSESPILTERPIPKLTKRALEKTLFAFRGVID 124
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q P + SA+K R+ R TIYE LL++D + + ++ C GT
Sbjct: 125 QTPSMYSALKHKGQPLYKLARQGIEVERKTRQVTIYELTLLDWDNES--IELYVHCSKGT 182
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ +G LG G H+ LRR+R E+ + H ++ ++ NY L R
Sbjct: 183 YIRTLLDDVGEALGCGAHVVALRRLRVAHYHEDQMIKLAH--LEREYDKANYTG---LDR 237
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP-----GLLRF--ENDIEVG 343
++PLE +++ + + + +T + G +M+P G +R +ND +G
Sbjct: 238 YLLPLETMVSHFPAIKLSSSTAFYLQQGQAVMVPNAPAHGFVRLRDQNDQFIG 290
>gi|77358714|ref|YP_338283.1| tRNA pseudouridine synthase B [Coxiella burnetii RSA 493]
gi|91208075|sp|Q4AAX7.1|TRUB_COXBU RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|71066704|gb|AAZ22626.1| tRNA pseudouridine synthase B [Coxiella burnetii RSA 493]
Length = 309
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 139/293 (47%), Gaps = 53/293 (18%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
KRP VD G++ LDKP +S+E + +KR+ +K GH+G+LDP TG L +C+
Sbjct: 10 FKRP-VD----GVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICLGE 64
Query: 152 ATRLVKSQQGAGKEYVCVARLHDK---------------VPDVAKVA--RALEALTGAVF 194
AT+ + A K Y RL + +P + K A + L A G +
Sbjct: 65 ATKFSQFLLEADKSYSVKGRLGVRTASGDSESPILTERPIPKLTKRALEKTLFAFRGVID 124
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q P + SA+K R+ R TIYE LL++D + + ++ C GT
Sbjct: 125 QTPSMYSALKHKGQPLYKLARQGIEVERKTRQVTIYELTLLDWDNES--IELYVHCSKGT 182
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ +G LG G H+ LRR+R E+ + H ++ ++ NY L R
Sbjct: 183 YIRTLLDDVGEALGCGAHVVALRRLRVAHYHEDQMIKLAH--LEREYDKANYTG---LDR 237
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP-----GLLRF--ENDIEVG 343
++PLE +++ + + + +T + G +M+P G +R +ND +G
Sbjct: 238 YLLPLETMVSHFPAIKLSSSTAFYLQQGQAVMVPNAPTHGFVRLRDQNDQFIG 290
>gi|163839415|ref|YP_001623820.1| tRNA pseudouridine synthase B [Renibacterium salmoninarum ATCC
33209]
gi|162952891|gb|ABY22406.1| tRNA pseudouridine synthase B [Renibacterium salmoninarum ATCC
33209]
Length = 212
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 29/203 (14%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
L++ ++ ++ G++ +DKP +SH+VVA ++R+ K GH+GTLDP TG L++ I++
Sbjct: 2 LRQHILKHVLSGLVIVDKPQGWTSHDVVAKMRRLAGTRKVGHAGTLDPMATGVLVIGINK 61
Query: 152 ATRLVKSQQGAGKEYVCVARL-HDKVPDVA--KVARALEALTGAVFQRPPLISAVK---- 204
AT+L+ G K Y RL + D A ++ RA+ ALTG + Q P +SA+K
Sbjct: 62 ATKLLTYIVGTSKTYDATIRLGQSTITDDAEGEIRRAVAALTGEILQVPSSVSAIKVDGE 121
Query: 205 -----------RQLRIRTIYESKLLEYDVDRHL--------VVFWISCEAGTYVRTMCVH 245
QL +R + +L +DV R V +SC +GTY+R +
Sbjct: 122 RSYARARAGKDVQLAVRPV---NILSFDVHRIQSTTDGLLDVEVTVSCSSGTYIRALARD 178
Query: 246 LGLILGVGGHMQELRRVRSGILG 268
LG LGVGGH+ LRR G G
Sbjct: 179 LGTALGVGGHLTALRRTAVGPYG 201
>gi|307256663|ref|ZP_07538442.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306864711|gb|EFM96615.1| tRNA pseudouridine synthase B [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 305
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 48/297 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +K + + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDILQKVKCLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDV----------------AKVARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L ++ A++ ALE G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGERTDTSDAEGQVVETRAVNIGEAEIITALEQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E + +EY V +L + + C GTY+RT+ LG
Sbjct: 132 NGKPLYEYARQGITVEREARPITIFELRFIEY-VAPYLTL-EVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
+LG G H+ LRR+ N + M D Q L +N E L + ++PL+ + S
Sbjct: 190 VLGCGAHVTVLRRLAVA----NYPIEAMMSYADLQNLSENQPLEE-LDKYLLPLDTAVES 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
+L + A+ +G + ++FEN+ ++ +V L + + LG+AE+TT
Sbjct: 245 LPKLNLTAEQTKAVGFGQR------VKFENNDQIYGQVRLFSDNMQ--FLGVAEITT 293
>gi|125717774|ref|YP_001034907.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK36]
gi|189036601|sp|A3CMF2.1|TRUB_STRSV RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|125497691|gb|ABN44357.1| tRNA pseudouridine synthase B, putative [Streptococcus sanguinis
SK36]
Length = 292
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILDRTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFKRTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTFSAGMSLDDAL 211
>gi|161830815|ref|YP_001597274.1| tRNA pseudouridine synthase B [Coxiella burnetii RSA 331]
gi|189036469|sp|A9N8V4.1|TRUB_COXBR RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|161762682|gb|ABX78324.1| tRNA pseudouridine synthase B [Coxiella burnetii RSA 331]
Length = 309
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 139/293 (47%), Gaps = 53/293 (18%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
KRP VD G++ LDKP +S+E + +KR+ +K GH+G+LDP TG L +C+
Sbjct: 10 FKRP-VD----GVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICLGE 64
Query: 152 ATRLVKSQQGAGKEYVCVARLHDK---------------VPDVAKVA--RALEALTGAVF 194
AT+ + A K Y RL + +P + K A + L A G +
Sbjct: 65 ATKFSQFLLEADKSYSVKGRLGVRTASGDSESPILTECPIPKLTKRALEKTLFAFRGVID 124
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q P + SA+K R+ R TIYE LL++D + + ++ C GT
Sbjct: 125 QTPSMYSALKHKGQPLYKLARQGIEVERKTRQVTIYELTLLDWDNES--IELYVHCSKGT 182
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ +G LG G H+ LRR+R E+ + H ++ ++ NY L R
Sbjct: 183 YIRTLLDDVGEALGCGAHVVALRRLRVAHYHEDQMIKLAH--LEREYDKANYTG---LDR 237
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIP-----GLLRF--ENDIEVG 343
++PLE +++ + + + +T + G +M+P G +R +ND +G
Sbjct: 238 YLLPLETMVSHFPAIKLSSSTAFYLQQGQAVMVPNAPTHGFVRLRDQNDQFIG 290
>gi|89895260|ref|YP_518747.1| hypothetical protein DSY2514 [Desulfitobacterium hafniense Y51]
gi|89334708|dbj|BAE84303.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 300
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 66/302 (21%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+IN+ KP +S +VV ++RIL K GH+GTLDP+VTG L +C+ +ATRL +
Sbjct: 9 GVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYITNQ 68
Query: 163 GKEYVCVA--------------RLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQ 206
GK Y C LH + V+ R + G++ Q PP+ SAVK Q
Sbjct: 69 GKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVKHQ 128
Query: 207 LRIRTIYESKLLEYDVDR--------HL------------VVFWISCEAGTYVRTMCVHL 246
+ +YE +V+R HL +F + C GTY+RT+C +
Sbjct: 129 G--KRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDM 186
Query: 247 GLILGVGGHMQELRRVRSGI--LGENDNMVTMHDVMDAQWLYDNYRDE-AYLRRVIMPLE 303
G LG G HM L R+RSG + E+ ++ T+ + M+ D+Y Y++ + +P
Sbjct: 187 GQTLGCGAHMSALIRLRSGPFHIQESLSLETIQNFMEQ----DDYSFLIPYIQVLDLP-R 241
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV-----VLMTTKGEAVAL 358
V L+ + L ++ GL ++ IEVG E+ V + ++G + +
Sbjct: 242 VSLSPQRALAFRN---------------GLSTAKSQIEVGAEIGEGCEVQVFSEGNFLGI 286
Query: 359 GI 360
GI
Sbjct: 287 GI 288
>gi|418055356|ref|ZP_12693411.1| tRNA pseudouridine synthase B [Hyphomicrobium denitrificans 1NES1]
gi|353210938|gb|EHB76339.1| tRNA pseudouridine synthase B [Hyphomicrobium denitrificans 1NES1]
Length = 306
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 124/290 (42%), Gaps = 42/290 (14%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G + LDKPAN +S + V I+R+ +K GHSGTLDP TG L + + AT+ V
Sbjct: 11 HGWLVLDKPANMTSTQAVGIIRRVFNAQKAGHSGTLDPLATGILPIALGEATKTVSFAVD 70
Query: 162 AGKEY----------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205
K Y V + D+ PD A + L G + Q PP SA+K
Sbjct: 71 GEKAYRFTVRWGTETETDDTEGAVTKTSDQRPDRASIEALLSQFHGEIMQVPPAYSAIKV 130
Query: 206 Q---------------LRIRTIYESKLLEYDV-DRHLVVFWISCEAGTYVRTMCVHLGLI 249
L R ++ L D D VF C GTYVR + +G +
Sbjct: 131 DGARAYDLARDGETVVLEARPVFIDSLQLVDTPDAATSVFEARCGKGTYVRALARDMGRL 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG GH+ LRR + G E VTM ++M A + D L R++ P+E L
Sbjct: 191 LGCYGHVIALRRTQVGPFDEA-IAVTMDELMAAS----DSGDPEQLSRLLQPVEAALADL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
L+V + ++ G ++I G D + T+KG VALG
Sbjct: 246 PELLVSQSDAASLARGQTVLIRG-----RDAPILSGPAYATSKGRLVALG 290
>gi|422879086|ref|ZP_16925552.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1059]
gi|422928932|ref|ZP_16961874.1| tRNA pseudouridine synthase B [Streptococcus sanguinis ATCC 29667]
gi|422931904|ref|ZP_16964835.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK340]
gi|332366480|gb|EGJ44228.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1059]
gi|339615796|gb|EGQ20464.1| tRNA pseudouridine synthase B [Streptococcus sanguinis ATCC 29667]
gi|339619337|gb|EGQ23918.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK340]
Length = 292
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKIYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQKVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSVDDAL 211
>gi|219669691|ref|YP_002460126.1| tRNA pseudouridine synthase B [Desulfitobacterium hafniense DCB-2]
gi|219539951|gb|ACL21690.1| tRNA pseudouridine synthase B [Desulfitobacterium hafniense DCB-2]
Length = 294
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 143/302 (47%), Gaps = 66/302 (21%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+IN+ KP +S +VV ++RIL K GH+GTLDP+VTG L +C+ +ATRL +
Sbjct: 3 GVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYITNQ 62
Query: 163 GKEYVCVA--------------RLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQ 206
GK Y C LH + V+ R + G++ Q PP+ SAVK Q
Sbjct: 63 GKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVKHQ 122
Query: 207 LRIRTIYESKLLEYDVDR--------HL------------VVFWISCEAGTYVRTMCVHL 246
+ +YE +V+R HL +F + C GTY+RT+C +
Sbjct: 123 G--KRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDM 180
Query: 247 GLILGVGGHMQELRRVRSGI--LGENDNMVTMHDVMDAQWLYDNYRDE-AYLRRVIMPLE 303
G LG G HM L R+RSG + E+ ++ T+ + M+ D+Y Y++ + +P
Sbjct: 181 GQTLGCGAHMSALIRLRSGPFHIQESLSLETIQNFMEQ----DDYSFLIPYIQVLDLP-R 235
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV-----VLMTTKGEAVAL 358
V L+ + L ++ GL ++ IEVG E+ V + ++G + +
Sbjct: 236 VSLSPQRALAFRN---------------GLSTAKSQIEVGAEIGEGCEVQVFSEGNFLGI 280
Query: 359 GI 360
GI
Sbjct: 281 GI 282
>gi|401683152|ref|ZP_10815041.1| tRNA pseudouridine(55) synthase [Streptococcus sp. AS14]
gi|400183834|gb|EJO18085.1| tRNA pseudouridine(55) synthase [Streptococcus sp. AS14]
Length = 292
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKNKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILDRTPVTELLEEAFIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFSSHMSQLTRTSSAGMSLDDAL 211
>gi|261407933|ref|YP_003244174.1| tRNA pseudouridine synthase B [Paenibacillus sp. Y412MC10]
gi|261284396|gb|ACX66367.1| tRNA pseudouridine synthase B [Paenibacillus sp. Y412MC10]
Length = 303
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 37/201 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA ++ ++R+++ GH+GTLDP+VTG L +C+ RATR+V+ Q
Sbjct: 6 GILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQEL 65
Query: 163 GKEYVCVARL------HDKVPDVAKVA-----------RALEALTGAVFQRPPLISAVK- 204
KEY V RL D +V + A AL++ G + Q PP+ SAVK
Sbjct: 66 PKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYSAVKI 125
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL--VVFWISCEAGTYVRTMCVHL 246
R+ R TI+E ++ ++D + + F + C GTY+RT+CV +
Sbjct: 126 NGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTEISFRVLCSKGTYIRTLCVDI 185
Query: 247 GLILGVGGHMQEL-RRVRSGI 266
G LG+ M +L R + +GI
Sbjct: 186 GRKLGLPSVMVKLVRTISAGI 206
>gi|295696161|ref|YP_003589399.1| tRNA pseudouridine synthase B [Kyrpidia tusciae DSM 2912]
gi|295411763|gb|ADG06255.1| tRNA pseudouridine synthase B [Kyrpidia tusciae DSM 2912]
Length = 300
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 104/199 (52%), Gaps = 36/199 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKPA +SH+VV ++R L + + GH+GTLDP TG L++C+ +ATR+ + G
Sbjct: 3 GVLVLDKPAGLTSHDVVGRVRRWLGIRRIGHTGTLDPDATGVLVLCVGKATRIAEYLSGE 62
Query: 163 GKEYVCVARLH-------------DKVP----DVAKVARALEALTGAVFQRPPLISAVK- 204
KEY+ V L +++P D + RA ALTG + QRPP SAV+
Sbjct: 63 DKEYIGVLALGAATDTDDSSGEVIERMPSPSADPEALRRAAAALTGEILQRPPAFSAVRV 122
Query: 205 ---------RQLRIRTIYESKLLEYDVDRHL---------VVFWISCEAGTYVRTMCVHL 246
R R + K+ Y D + V F ++C GTYVR++C L
Sbjct: 123 GGKRAYELARAGRPADLPARKVQVYRFDVGMPTPRGELLEVPFHVACSKGTYVRSLCRDL 182
Query: 247 GLILGVGGHMQELRRVRSG 265
G+ +G+ HM LRRVR G
Sbjct: 183 GVKVGIPAHMASLRRVRQG 201
>gi|422821453|ref|ZP_16869646.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK353]
gi|324990881|gb|EGC22816.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK353]
Length = 292
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILDRTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPIYYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + D +
Sbjct: 183 DLGAKLGFSSHMSQLTRTSSAGMSLEDAL 211
>gi|289423076|ref|ZP_06424891.1| tRNA pseudouridine synthase B [Peptostreptococcus anaerobius 653-L]
gi|289156407|gb|EFD05057.1| tRNA pseudouridine synthase B [Peptostreptococcus anaerobius 653-L]
Length = 323
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 42/247 (17%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
I N+ KP +SH+VV +++IL +K GH+GTLDP G L +C+ RAT++
Sbjct: 4 IFNIKKPPGMTSHDVVYKVRKILGTKKVGHTGTLDPDAVGVLPICVGRATKVCDLILNKD 63
Query: 164 KEYVCVARL------HDKVPDVA-----------KVARALEALTGAVFQRPPLISAVKRQ 206
K Y C L +D +V +V AL + G + Q PP SA+K +
Sbjct: 64 KAYECELTLGVETDTYDSSGEVVFEKDLSDLTDEQVVDALMSQVGDIDQYPPKYSALKVK 123
Query: 207 -----------------LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
L+ R I K+ +D ++F I C GTYVR++C +G I
Sbjct: 124 GKKMCDLVRRGRADEIVLKPRPIKIKKIDIKSLDIPKILFEIDCSKGTYVRSVCHDVGQI 183
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LGVGGHM L R RSGI T+ D + + L + +RDE L +E +L +
Sbjct: 184 LGVGGHMSSLTRTRSGIF-------TLDDSISLEEL-EKFRDEGSLIDHSYSVEDVLADF 235
Query: 310 KRLVVKD 316
L +KD
Sbjct: 236 PFLKIKD 242
>gi|94263053|ref|ZP_01286872.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
gi|93456596|gb|EAT06704.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
Length = 259
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 97/197 (49%), Gaps = 35/197 (17%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR-ATRLVKSQQGA 162
+I LDKP PSS +V ++R L ++K GH+GTLDP +G L+VC+ R ATRLV+
Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72
Query: 163 GKEYVCVARL------HDKVPDVAKVA--------RALEALT---GAVFQRPPLISAVKR 205
KEY+ +L HD+ V A R E L G + Q PP SAVK
Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATAEVTHEQLLRLQEVLFRFRGEILQSPPAFSAVKH 132
Query: 206 QLRIRTIY-----------------ESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
Q R +Y E LE D + +V + C GTY+R++ +G
Sbjct: 133 QGRPLYVYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQ 192
Query: 249 ILGVGGHMQELRRVRSG 265
LG G H+ ELRR+ SG
Sbjct: 193 SLGCGAHLLELRRLASG 209
>gi|320546830|ref|ZP_08041136.1| tRNA pseudouridine synthase B [Streptococcus equinus ATCC 9812]
gi|320448526|gb|EFW89263.1| tRNA pseudouridine synthase B [Streptococcus equinus ATCC 9812]
Length = 301
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 131/276 (47%), Gaps = 46/276 (16%)
Query: 92 LKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR 151
LK ++ + GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +
Sbjct: 2 LKTVIIVVMINGIINLKKEAGMTSHDAVFKLRKILQEKKIGHGGTLDPDVVGVLPIAVGK 61
Query: 152 ATRLVKSQQGAGKEY---VCV----------ARLHDKVP--DVA--KVARALEALTGAVF 194
ATR+++ AGK Y +C+ + +K P D++ KV +AL G +
Sbjct: 62 ATRVIEYMTEAGKVYRGQICLGFSTTTEDASGEILEKTPVTDLSEEKVDQALSRFIGDII 121
Query: 195 QRPPLISAV--------------------KRQLRIRTIYESKLLEYDVDRHLVVFWISCE 234
Q PP+ SAV KRQ+ I L + D F ++C
Sbjct: 122 QVPPMYSAVKVNGKRLYEYARAGQAVERPKRQVTIHNFKRISQLSFKNDCCYFDFEVACS 181
Query: 235 AGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAY 294
GTY+RT+ V LG LG HM L R S L D + T+ ++ D + +D++
Sbjct: 182 KGTYIRTLSVDLGKELGYASHMSYLERQASAGLQLEDAL-TLSEIAD-KVAHDDF----- 234
Query: 295 LRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMI 330
+MP+E + R+ + D V I +G K+ I
Sbjct: 235 --SFLMPIEYGVIDLPRIDLTDEEVTEISFGRKIAI 268
>gi|448821513|ref|YP_007414675.1| tRNA pseudouridine synthase B [Lactobacillus plantarum ZJ316]
gi|448275010|gb|AGE39529.1| tRNA pseudouridine synthase B [Lactobacillus plantarum ZJ316]
Length = 307
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 119/254 (46%), Gaps = 48/254 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +S + VA I+R+ + K GHSGTLDP V G L +CI AT++V+ +
Sbjct: 4 GILPLYKPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVAS 63
Query: 163 GKEYVC-----------------VARLHDKVPDVA-KVARALEALTGAVFQRPPLISAVK 204
GKEY +AR P + +V AL +TGA+ Q PP+ SAVK
Sbjct: 64 GKEYQGSITLGFATTTEDLDGEEIARQAVTEPFTSDQVDAALAQMTGAITQIPPMFSAVK 123
Query: 205 --------------------RQLRIRTIYESKLLEYD--VDRHLVVFWISCEAGTYVRTM 242
R + I + + + YD + F ++C GTYVRT+
Sbjct: 124 VNGRRLYDYARSGETVERPERHVTISSFKQRQASTYDSATQTQTIYFTVACSKGTYVRTL 183
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
V +G +LGV M +L R++SG D VT ++ ++ D ++ P+
Sbjct: 184 AVDIGKVLGVPAVMSDLTRLKSGGF-TLDETVTFEEIA-------SHVDAGTAGALLAPI 235
Query: 303 EVLLTSYKRLVVKD 316
+ L+ Y R+ + D
Sbjct: 236 DKALSQYPRVTLTD 249
>gi|422876681|ref|ZP_16923151.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1056]
gi|332361489|gb|EGJ39293.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1056]
Length = 292
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 39/217 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + +E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDETMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTGPISYEGEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD 281
LG LG HM +L R S + +D + T+ ++ D
Sbjct: 183 DLGTKLGFASHMSQLTRTSSAGMSLDDAL-TLDEIAD 218
>gi|413942368|gb|AFW75017.1| pseudouridylate synthase/ transporter [Zea mays]
Length = 497
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 40/205 (19%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ +DKP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT++V S QG
Sbjct: 280 VVLIDKPKGWTSFTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMV 339
Query: 164 KEYVCVARLHDKV-------PDVAK----------VARALEALTGAVFQRPPLISAVK-- 204
K Y V RL + P + + + +A + G ++Q PP+ SA+K
Sbjct: 340 KGYSGVFRLGEATSTWDADSPIIQREPWEHIKDENIRKAAASFMGEIWQVPPMFSAIKVG 399
Query: 205 -------------RQLRIRTIYESKLLEYDVDRHL-----VVFWISCEAGTYVRTMCVHL 246
+L R I + ++D++R L ++F ++C GTY+R++C L
Sbjct: 400 GEKMYDKARKGETVELSPRRI---SIYQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADL 456
Query: 247 GLILGVGGHMQELRRVRSGILGEND 271
G LG H+ LRR G ND
Sbjct: 457 GKALGSCAHLTALRRDSIGEYSVND 481
>gi|226501514|ref|NP_001150630.1| pseudouridylate synthase/ transporter [Zea mays]
gi|195640714|gb|ACG39825.1| pseudouridylate synthase/ transporter [Zea mays]
Length = 490
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 40/205 (19%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ +DKP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT++V S QG
Sbjct: 273 VVLIDKPKGWTSFTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMV 332
Query: 164 KEYVCVARLHDKV-------PDVAK----------VARALEALTGAVFQRPPLISAVK-- 204
K Y V RL + P + + + +A + G ++Q PP+ SA+K
Sbjct: 333 KGYSGVFRLGEATSTWDADSPIIQREPWEHIKDENIRKAAASFMGEIWQVPPMFSAIKVG 392
Query: 205 -------------RQLRIRTIYESKLLEYDVDRHL-----VVFWISCEAGTYVRTMCVHL 246
+L R I + ++D++R L ++F ++C GTY+R++C L
Sbjct: 393 GEKMYDKARKGETVELSPRRI---SIYQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADL 449
Query: 247 GLILGVGGHMQELRRVRSGILGEND 271
G LG H+ LRR G ND
Sbjct: 450 GKALGSCAHLTALRRDSIGEYSVND 474
>gi|323351791|ref|ZP_08087445.1| tRNA pseudouridine synthase B [Streptococcus sanguinis VMC66]
gi|322122277|gb|EFX94003.1| tRNA pseudouridine synthase B [Streptococcus sanguinis VMC66]
Length = 292
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + +E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEVMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEGEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGTKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|392426760|ref|YP_006467754.1| tRNA pseudouridine synthase B [Desulfosporosinus acidiphilus SJ4]
gi|391356723|gb|AFM42422.1| tRNA pseudouridine synthase B [Desulfosporosinus acidiphilus SJ4]
Length = 294
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 100/199 (50%), Gaps = 38/199 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+IN+ KP +S +VV W+++ L+ +K GH+GTLDP V G L +C+ + TRL + G
Sbjct: 3 GLINVLKPPGMTSADVVGWLRKTLKTKKIGHTGTLDPGVVGVLPICVGKGTRLAEYITGQ 62
Query: 163 GKEYVC-----VA---------RLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQ 206
GK Y+ +A R+ ++ P + + V AL G V Q PP+ SAV+++
Sbjct: 63 GKTYLAEVTFGIATDTQDSFGQRIFEQKPQLQRTEVEEALRKFAGNVSQIPPMYSAVRKE 122
Query: 207 LRIRTIYESKLLEYDVDRHL--------------------VVFWISCEAGTYVRTMCVHL 246
R +YE + V+R + I C GTY+RT+C L
Sbjct: 123 --GRHLYEYARQGFSVEREAREVTISKIELKKWYDEEFPRALLHIECSKGTYIRTLCHDL 180
Query: 247 GLILGVGGHMQELRRVRSG 265
G LG G +M L RVRSG
Sbjct: 181 GEALGCGAYMSFLLRVRSG 199
>gi|296132891|ref|YP_003640138.1| tRNA pseudouridine synthase B [Thermincola potens JR]
gi|296031469|gb|ADG82237.1| tRNA pseudouridine synthase B [Thermincola potens JR]
Length = 310
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 132/295 (44%), Gaps = 49/295 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP +SH+VV+++++ + K GH+GTLDP V G L VCI +ATR+ +
Sbjct: 3 GIINVLKPPGMTSHDVVSFLRKTFQTRKVGHTGTLDPGVPGVLAVCIGKATRVAEFLTEG 62
Query: 163 GKEYVCVARL------HDKVPDVAKV-----------ARALEALTGAVFQRPPLISAVK- 204
K Y + + D ++ +V A + G + Q PP++SAVK
Sbjct: 63 TKSYRGIIKFGVTTTTQDGFGEITEVKDASYLKQSDIADCFKKFIGVIEQVPPMVSAVKI 122
Query: 205 -------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
R + I ++ + V+F ++C GTYVRT+C
Sbjct: 123 GGRKLYELARQGKEIVRPPRTVVIHSLIIKRFTNLGSAHPEVMFDVTCSKGTYVRTLCHD 182
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL--YDNYRDEAYLRRVIMPLE 303
+G LG G +M L R SG +MDA L D + + + + P++
Sbjct: 183 IGQALGCGAYMSYLIRTSSGPF----------KLMDAYTLEEIDELARKQEVLKALQPID 232
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
L + ++V+++ V A+ G K+ GL+ +I G V L G +A+
Sbjct: 233 SALIGFPVILVRESAVKAVINGNKIYPSGLVTEPGEIAQGCLVRLQDKNGSLLAV 287
>gi|240949211|ref|ZP_04753555.1| tRNA pseudouridine synthase B [Actinobacillus minor NM305]
gi|240296327|gb|EER46971.1| tRNA pseudouridine synthase B [Actinobacillus minor NM305]
Length = 305
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 50/297 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+GI LDKP SS++++ +KRI + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGIFLLDKPQGMSSNDILQKVKRIFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHD--------------KVPDVAK--VARALEALTGAVFQRPPLISAVK- 204
+ K Y A+L + KV +V + + +AL G + Q P + SA+K
Sbjct: 72 SDKRYQVTAKLGERTDTSDAEGQVVETKVVNVTESDIQQALAQFRGDILQVPTMFSALKH 131
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI+E K + Y+ + + C GTY+RT+ LG
Sbjct: 132 QGKPLYEYARAGITIEREARPITIFELKFIAYEAP--FLTLEVHCSKGTYIRTLVDDLGE 189
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY-RDEAYLRRVIMPLEVLLT 307
+LG G H+ LRR+ + + M D Q + +N DE L ++++P++ ++
Sbjct: 190 VLGCGAHVTVLRRLAVA----DYPIAAMMSYTDLQNMAENQPLDE--LDKLLLPMDTAVS 243
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
+ ++ + + A+ +G + ++FEN ++ V L + + LG+AE+T
Sbjct: 244 TLPKINLNEQQTKAVGFGQR------VKFENVEQIYGLVRLFSNTAQ--FLGVAEIT 292
>gi|392394565|ref|YP_006431167.1| tRNA pseudouridine synthase B [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525643|gb|AFM01374.1| tRNA pseudouridine synthase B [Desulfitobacterium dehalogenans ATCC
51507]
Length = 294
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 100/199 (50%), Gaps = 38/199 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+IN+ KP+ +S +VV ++RIL K GH+GTLDP+VTG L +C+ +ATRL +
Sbjct: 3 GVINVLKPSGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYITNQ 62
Query: 163 GKEYVC------VARLHDKVPDVAKVARA----------LEALTGAVFQRPPLISAVKRQ 206
GK Y C + D ++ A A + G++ Q PP+ SAVK Q
Sbjct: 63 GKSYRCEMTFGIITDTQDASGEILNKAPAHVSAEDFQHIIPQYLGSIRQIPPMFSAVKHQ 122
Query: 207 LRIRTIYESKLLEYDVDR--------HL------------VVFWISCEAGTYVRTMCVHL 246
+ +YE +V+R HL +F + C GTYVRT+C +
Sbjct: 123 G--KRLYELARQGLEVERKSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYVRTLCHDM 180
Query: 247 GLILGVGGHMQELRRVRSG 265
G LG G HM +L R+RSG
Sbjct: 181 GQTLGCGAHMSDLVRLRSG 199
>gi|339640470|ref|ZP_08661914.1| tRNA pseudouridine synthase B [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453739|gb|EGP66354.1| tRNA pseudouridine synthase B [Streptococcus sp. oral taxon 056
str. F0418]
Length = 292
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 102/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVIGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
R++ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYVRVGQEVERPERKVTIYSFERTSPISYEGEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG+ HM +L R S + +D +
Sbjct: 183 DLGAKLGLASHMSQLTRTSSAGMSLDDAL 211
>gi|422846442|ref|ZP_16893125.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK72]
gi|325687885|gb|EGD29905.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK72]
Length = 292
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKTYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE---YDVDRHLVVFWISCEAGTYVRTMCV 244
R R+ TIY + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERLVTIYSFDRISPIAYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|422871134|ref|ZP_16917627.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1087]
gi|328946090|gb|EGG40236.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1087]
Length = 292
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKTYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE---YDVDRHLVVFWISCEAGTYVRTMCV 244
R R+ TIY + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERLVTIYSFDRISPIAYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|429727378|ref|ZP_19262151.1| tRNA pseudouridine synthase B [Peptostreptococcus anaerobius VPI
4330]
gi|429152680|gb|EKX95495.1| tRNA pseudouridine synthase B [Peptostreptococcus anaerobius VPI
4330]
Length = 323
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 42/247 (17%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
I N+ KP +SH+VV +++IL +K GH+GTLDP G L +C+ RAT++
Sbjct: 4 IFNIKKPPGMTSHDVVYKVRKILGTKKVGHTGTLDPDAVGVLPICVGRATKVCDLILNKD 63
Query: 164 KEYVCVARL------HDKVPDVA-----------KVARALEALTGAVFQRPPLISAVKRQ 206
K Y C L +D +V +V AL + G + Q PP SA+K +
Sbjct: 64 KAYECELTLGVETDTYDSSGEVIFEKDISDLTDEQVVDALMSQVGDIDQYPPKYSALKVK 123
Query: 207 -----------------LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
L+ R I K+ +D ++F I C GTYVR++C +G I
Sbjct: 124 GKKMCDLVRRGRADEIVLKPRPIKIKKIDIKSLDIPKILFEIDCSKGTYVRSVCHDVGQI 183
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LGVGGHM L R RSGI T+ D + + L + +RDE L +E +L +
Sbjct: 184 LGVGGHMSSLTRTRSGIF-------TLDDSISLEEL-EKFRDEGSLIGHSYSVEDVLADF 235
Query: 310 KRLVVKD 316
L +KD
Sbjct: 236 PFLKIKD 242
>gi|374582842|ref|ZP_09655936.1| tRNA pseudouridine 55 synthase [Desulfosporosinus youngiae DSM
17734]
gi|374418924|gb|EHQ91359.1| tRNA pseudouridine 55 synthase [Desulfosporosinus youngiae DSM
17734]
Length = 306
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 103/214 (48%), Gaps = 35/214 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP +S +VV WI++ L+++K GH+GTLDP V G L +C+ + TRL +
Sbjct: 3 GIINVLKPTGMTSSDVVVWIRKTLKLKKVGHTGTLDPGVAGVLPICVGKGTRLAEYITEQ 62
Query: 163 GKEYVCVARL------HDKVPDVAK----------VARALEALTGAVFQRPPLISAVK-- 204
GK Y+ D V + + R L G V Q PP+ SAV+
Sbjct: 63 GKAYISEVTFGVTTDTQDSYGKVIREISPRLKRKDLERILPGFIGKVSQVPPMYSAVRKE 122
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHL-VVFWISCEAGTYVRTMCVHLGL 248
R R +IY L E+ + + + I C GTY+RT+C +G
Sbjct: 123 GKHLYEYARQGISIDRPSREVSIYRLNLKEWFEEEYPKAILEIECSKGTYIRTLCHDMGQ 182
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
+LG G HM L RVRSG D+ T+ ++ +A
Sbjct: 183 VLGCGAHMSYLLRVRSGPFKIQDSW-TLEEIGEA 215
>gi|430750266|ref|YP_007213174.1| tRNA pseudouridine 55 synthase [Thermobacillus composti KWC4]
gi|430734231|gb|AGA58176.1| tRNA pseudouridine 55 synthase [Thermobacillus composti KWC4]
Length = 315
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 105/207 (50%), Gaps = 36/207 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA ++R R+ + GH+GTLDP+VTG L +C+ RATR+V+ Q
Sbjct: 18 GILAVWKPAGWTSHDVVAKVRRWTRMRRIGHAGTLDPQVTGVLPLCLGRATRVVEYMQEL 77
Query: 163 GKEYVCVARLH---------DKVPDVAKVARALEAL--------TGAVFQRPPLISAVK- 204
K Y V +L V D + + EA+ G + Q PP+ SAVK
Sbjct: 78 PKAYETVMQLGVATDTEDLTGTVLDTSDASHVTEAMLREALARFIGEIEQVPPMYSAVKV 137
Query: 205 ----------------RQLRIRTIY--ESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHL 246
R+ R TI+ E + E V R + F C GTY+RT+CV +
Sbjct: 138 GGRKLYELAREGKTVERKARKVTIHSLELRFAELGVPRPRIGFGAVCSKGTYIRTLCVDI 197
Query: 247 GLILGVGGHMQELRRVRSGILGENDNM 273
G LGV M+ L R S LGE+D +
Sbjct: 198 GRALGVHAAMESLVRTMSAGLGESDCL 224
>gi|392957563|ref|ZP_10323086.1| tRNA pseudouridine 5S synthase [Bacillus macauensis ZFHKF-1]
gi|391876526|gb|EIT85123.1| tRNA pseudouridine 5S synthase [Bacillus macauensis ZFHKF-1]
Length = 306
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 51/270 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KPA +SH+ VA ++++L+ +K GH+GTLDP+V+G L +CI RAT++ +
Sbjct: 7 GILPLLKPAGMTSHDCVARLRKLLKTKKVGHTGTLDPEVSGVLPICIGRATKVAQYMSDY 66
Query: 163 GKEYVCVARL---------------HDKVP---DVAKVARALEALTGAVFQRPPLISAVK 204
K Y + VP ++ V R + G + Q PP+ SAVK
Sbjct: 67 PKAYEAEVTVGWSTTTEDAHGEKVEEQSVPEGLELVDVVRVASSFVGEIKQVPPMYSAVK 126
Query: 205 -----------------RQLRIRTIYESKLLEYDVDRHL------VVFWISCEAGTYVRT 241
R +R TI+E L HL F++SC GTY+RT
Sbjct: 127 VNGKKLYQYAREGIEVERPVRQATIFE--LSVTTTASHLPGPDPTFSFFVSCSKGTYIRT 184
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+ V +G LG HM LRR SG D + + ++ + D + EA L +P
Sbjct: 185 LAVDMGKALGYPAHMSHLRRTSSGPFKLEDCLT--FEEIEERIAAD--QKEALL----LP 236
Query: 302 LEVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
LE + + R+ V + T + G+ L +P
Sbjct: 237 LETAIAHFGRITVDEETEAKVRNGSVLPLP 266
>gi|345002395|ref|YP_004805249.1| tRNA pseudouridine synthase B [Streptomyces sp. SirexAA-E]
gi|344318021|gb|AEN12709.1| tRNA pseudouridine synthase B [Streptomyces sp. SirexAA-E]
Length = 301
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 57/271 (21%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VVA ++ I R + GH+GTLDP TG L++ ++RAT+L+
Sbjct: 12 GLVVVDKPAGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALT 71
Query: 163 GKEYVCVARL-HDKVPDVAK----------------VARALEALTGAVFQRPPLISAVK- 204
KEY+ RL D V D A+ V + ALTGA+ Q P +SA+K
Sbjct: 72 EKEYLGTIRLGQDTVTDDAEGEITSSTDASGVTREAVDAGIAALTGAIMQVPSKVSAIKI 131
Query: 205 --------------RQLRIRTIYESKLLEYDVDRHL---------VVFWISCEAGTYVRT 241
++ R + S YDV + +V + C +GTY+R
Sbjct: 132 DGKRSYARVRGGEEFEIPARPVTVSSFRVYDVREAVAEDGTPVLDLVVSVVCSSGTYIRA 191
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+ LG LGVGGH+ LRR R G G +DA D +++E +MP
Sbjct: 192 LARDLGAGLGVGGHLTALRRTRVGPYG-----------IDAARTLDQHQEEL----TVMP 236
Query: 302 L-EVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
+ E +++ R V + + G ++ +P
Sbjct: 237 VAEAAASAFPRWDVDEKRARLLLNGVRVDMP 267
>gi|163119441|ref|YP_079064.2| tRNA pseudouridine synthase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645947|ref|ZP_08000177.1| tRNA pseudouridine synthase B [Bacillus sp. BT1B_CT2]
gi|404489161|ref|YP_006713267.1| tRNA pseudouridine synthase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682215|ref|ZP_17657054.1| tRNA pseudouridine synthetase B [Bacillus licheniformis WX-02]
gi|62901268|sp|Q65JH8.1|TRUB_BACLD RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|52348152|gb|AAU40786.1| tRNA pseudouridine synthase TruB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|145902948|gb|AAU23426.2| tRNA pseudouridine 55 synthase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391697|gb|EFV72494.1| tRNA pseudouridine synthase B [Bacillus sp. BT1B_CT2]
gi|383438989|gb|EID46764.1| tRNA pseudouridine synthetase B [Bacillus licheniformis WX-02]
Length = 309
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 122/268 (45%), Gaps = 46/268 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V I+++L+ +K GH+GTLDP+V+G L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEK 63
Query: 163 GKEY------VCVARLHDKV------------PDVAKVARALEALTGAVFQRPPLISAVK 204
K Y C D+ PD V L +L G + Q PP+ SAVK
Sbjct: 64 SKTYDAEVTLGCSTETEDQTGEVTEKKPVLAPPDEQTVQSVLRSLEGTIEQVPPMYSAVK 123
Query: 205 -----------------RQLRIRTIYESKL---LEYDVDRHLVVFWISCEAGTYVRTMCV 244
R R TI+ +L + ++ D+ F ++C GTYVRT+ V
Sbjct: 124 VGGKKLYEYARAGIEVERPKRTITIHHIELTSEIRHEGDKARFRFVVTCSKGTYVRTLAV 183
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
+G LG HM L R SG D +T DV + + L ++P+E
Sbjct: 184 TIGEKLGYPAHMSNLVRTASGPF-TLDECLTFEDV-------EGLIADGTLSEKLVPIER 235
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPG 332
L + ++ DT + GA L PG
Sbjct: 236 ALDHLPKWIISDTLAKKVENGAVLETPG 263
>gi|357238878|ref|ZP_09126214.1| tRNA pseudouridine synthase B [Streptococcus ictaluri 707-05]
gi|356752600|gb|EHI69725.1| tRNA pseudouridine synthase B [Streptococcus ictaluri 707-05]
Length = 300
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 122/267 (45%), Gaps = 47/267 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V ++++L+ +K GH GTLDP V G L + + +ATR+++ +
Sbjct: 11 GIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMTDS 70
Query: 163 GKEYVCVARL---------------HDKVP---DVAKVARALEALTGAVFQRPPLISAVK 204
GK Y L +P D + +A+++ G + Q PP+ SAVK
Sbjct: 71 GKVYQGQITLGFSTTTEDASGEVVERSTLPSSLDEKMIDKAMQSFMGDISQVPPMYSAVK 130
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + L + F +SC GTYVRT+ V
Sbjct: 131 VNGRKLYEYARAGESVERPTRQVSIYQFERTSPLSFTGGTCQFDFRVSCSKGTYVRTLAV 190
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
LG LG+ HM L R S L D + T+ D+ D D+ ++P+E
Sbjct: 191 DLGKSLGIASHMSYLERQASAGLVLEDAL-TLSDIADKLATGDH--------SFLLPIEY 241
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIP 331
++ +LV+ D+ I +G ++ +P
Sbjct: 242 GVSDLPKLVINDSEAAEISFGRRITLP 268
>gi|386390460|ref|ZP_10075249.1| tRNA pseudouridine synthase B [Haemophilus paraphrohaemolyticus
HK411]
gi|385693185|gb|EIG23840.1| tRNA pseudouridine synthase B [Haemophilus paraphrohaemolyticus
HK411]
Length = 305
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 50/297 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 12 HGVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 71
Query: 162 AGKEYVCVARLHDKVPDVA-----------------KVARALEALTGAVFQRPPLISAVK 204
+ K Y A+L ++ D + + AL G + Q P + SA+K
Sbjct: 72 SDKRYFVTAKLGERT-DTSDAEGQVVETREVNVFEEDILAALPQFRGDILQVPTMFSALK 130
Query: 205 -----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
R+ R TI+E K +EY + + C GTY+RT+ LG
Sbjct: 131 HNGKPLYEYARQGITVEREARPITIFELKFVEYQAP--YLSLEVHCSKGTYIRTLVDDLG 188
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
+LG G H+ LRR+ G + + M + + Q L +++ + L R+++P++ +
Sbjct: 189 EVLGCGAHVSVLRRLAVG----DYPVEEMMPIEELQLLAESFPQQE-LDRLLLPMDTAVA 243
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
S ++ + ++ A+ +G + ++FEN +V V L + + LG+AE+T
Sbjct: 244 SLPQINLDESQTKAVKFGQR------VKFENGEQVYGLVRLFSNTQQ--FLGVAEIT 292
>gi|452990671|emb|CCQ98080.1| tRNA pseudouridine synthase B [Clostridium ultunense Esp]
Length = 313
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 103/202 (50%), Gaps = 36/202 (17%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+R GI+ + KP +SH+V+ ++R L +++ GH+GTLDP+ TG L +CI RAT++V+
Sbjct: 1 MRDGILVVAKPRGLTSHDVIQKVRRFLGIKRIGHAGTLDPEATGVLPLCIGRATKIVEYI 60
Query: 160 QGAGKEYVC-----------------VARLHDKVPDVAKVARALEALTGAVFQRPPLISA 202
Q K YV V R++ +V A + G Q PP+ SA
Sbjct: 61 QDRSKTYVAEWTGGIATDTEDQSGNVVERINGLHLTWEEVTSAFTSFIGPYAQTPPMYSA 120
Query: 203 VK-----------------RQLRIRTIYESKLLEYDV--DRHLVVFWISCEAGTYVRTMC 243
VK R R+ TIY+ +L+ ++ D V F + C GTY+RT+C
Sbjct: 121 VKVKGKRLYELARQGKEVERTPRLVTIYDLMILDGNLEQDPPKVRFQVRCSKGTYIRTLC 180
Query: 244 VHLGLILGVGGHMQELRRVRSG 265
V +G LG+ HM +L RV SG
Sbjct: 181 VDIGKKLGIPAHMSDLIRVESG 202
>gi|423070135|ref|ZP_17058911.1| tRNA pseudouridine synthase B [Streptococcus intermedius F0413]
gi|355366456|gb|EHG14174.1| tRNA pseudouridine synthase B [Streptococcus intermedius F0413]
Length = 292
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGVIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C G Y+RT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPVSYEDEQARFRFRVKCSKGAYIRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|254556863|ref|YP_003063280.1| tRNA pseudouridine synthase B [Lactobacillus plantarum JDM1]
gi|300768176|ref|ZP_07078081.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180804|ref|YP_003924932.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032801|ref|YP_004889792.1| tRNA pseudouridine synthase B [Lactobacillus plantarum WCFS1]
gi|418275545|ref|ZP_12890868.1| tRNA pseudouridine synthase B [Lactobacillus plantarum subsp.
plantarum NC8]
gi|37088392|sp|Q88VL5.1|TRUB_LACPL RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|254045790|gb|ACT62583.1| pseudouridylate synthase [Lactobacillus plantarum JDM1]
gi|300494240|gb|EFK29403.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046295|gb|ADN98838.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342242044|emb|CCC79278.1| tRNA pseudouridine synthase B [Lactobacillus plantarum WCFS1]
gi|376009096|gb|EHS82425.1| tRNA pseudouridine synthase B [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 307
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 118/254 (46%), Gaps = 48/254 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +S + VA I+R+ + K GHSGTLDP V G L +CI AT++V+ +
Sbjct: 4 GILPLYKPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVAS 63
Query: 163 GKEYVC-----------------VARLHDKVPDVA-KVARALEALTGAVFQRPPLISAVK 204
GKEY +AR P + +V AL +TGA+ Q PP+ SAVK
Sbjct: 64 GKEYQGSITLGFATTTEDLDGEEIARQAVTEPFTSDQVDAALAQMTGAITQIPPMFSAVK 123
Query: 205 --------------------RQLRIRTIYESKLLEYD--VDRHLVVFWISCEAGTYVRTM 242
R + I + + + YD + F ++C GTYVRT+
Sbjct: 124 VNGRRLYDYARSGETVERPERHITISSFKQRQASTYDSATQTQTIYFTVACSKGTYVRTL 183
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
V +G +LGV M +L R++SG D VT ++ + D ++ P+
Sbjct: 184 AVDVGKVLGVPAVMSDLTRLKSGGF-TLDETVTFEEIA-------AHVDAGTAGALLAPI 235
Query: 303 EVLLTSYKRLVVKD 316
+ L+ Y R+ + D
Sbjct: 236 DKALSQYPRVTLTD 249
>gi|205373415|ref|ZP_03226219.1| tRNA pseudouridine 55 synthase [Bacillus coahuilensis m4-4]
Length = 302
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 135/295 (45%), Gaps = 54/295 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L K +SH+ V +++ILR++K GH+GTLDP V G L +C+ RAT++ + A
Sbjct: 3 GILPLWKEKGMTSHDCVFKVRKILRMKKVGHTGTLDPDVEGVLPICLGRATKIAEYITDA 62
Query: 163 GKEYVCVARLHDKVP------------------DVAKVARALEALTGAVFQRPPLISAVK 204
GKEYV L +V KV + L++L G + Q PP+ SAVK
Sbjct: 63 GKEYVGEVTLGTSTTTEDASGEVIESVDSVEGVNVPKVLKVLKSLEGDIEQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLEYD-VDRHLVV---FWISCEAGTYVRTMC 243
R R IY +L E VD+ V F + C GTY+RT+
Sbjct: 123 VNGKKLYEYARAGIEVERPTRRVKIYSIELQEDSIVDKSNVTSFKFKVKCSKGTYIRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R +S DN VT++++ + L L + PLE
Sbjct: 183 VQIGERLGFPAHMSYLVRTQSATF-TKDNCVTLNELQEKVEL-------GLLEDCLYPLE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
++ + + DT + G + P D + E+VV M +G+ +A+
Sbjct: 235 HGISYLPQFQLNDTLAEKVKNGGVFLSP------KDFPMNEKVV-MVYQGQMLAI 282
>gi|354581529|ref|ZP_09000433.1| tRNA pseudouridine synthase B [Paenibacillus lactis 154]
gi|353201857|gb|EHB67310.1| tRNA pseudouridine synthase B [Paenibacillus lactis 154]
Length = 304
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 105/201 (52%), Gaps = 37/201 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA ++ I+R+++ GH+GTLDP+VTG L +C+ RATR+V+ Q
Sbjct: 6 GILAVHKPAGWTSHDVVAKVRGIVRMKRIGHTGTLDPEVTGVLPLCLGRATRVVEYMQEL 65
Query: 163 GKEYVCVARL------HDKVPDVAKVA-----------RALEALTGAVFQRPPLISAVK- 204
KEY V RL D V + A AL + G + Q PP+ SAVK
Sbjct: 66 PKEYEAVLRLGYATDTEDVTGTVIEEAESVLVTREEAEEALRSFVGEISQVPPMYSAVKV 125
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL--VVFWISCEAGTYVRTMCVHL 246
R+ R TI+E ++ YD + F + C GTY+RT+CV +
Sbjct: 126 NGKRLYELAREGKTVERKSRTVTIHEIEMTGYDASGAYPEISFRVLCSKGTYIRTLCVDI 185
Query: 247 GLILGVGGHMQEL-RRVRSGI 266
G LGV M L R + +GI
Sbjct: 186 GRKLGVPSVMVRLVRTISAGI 206
>gi|422851841|ref|ZP_16898511.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK150]
gi|325694319|gb|EGD36233.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK150]
Length = 292
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + +E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDETMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPIAYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|297180952|gb|ADI17155.1| pseudouridine synthase [uncultured gamma proteobacterium
HF0070_08D07]
Length = 302
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 37/217 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G I LDKP P+SH + +K+ + K GH+GTLDP TG L++CI AT+ + A
Sbjct: 10 GFIALDKPKGPTSHATIQDLKKRFGLPKIGHAGTLDPMATGLLLLCIGEATKFSRFLIEA 69
Query: 163 GKEYVCVARL------HDKVPDVAK-----------VARALEALTGAVFQRPPLISA--- 202
K YV L +D + + V RAL L GA+ Q+PP+ SA
Sbjct: 70 DKAYVAEIVLGESTDTYDADGQITEKKLIKGITNDSVERALCDLRGAILQKPPMFSAKKI 129
Query: 203 --------------VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
++R+ IY++KLLE R + I C GTY+R++ LG
Sbjct: 130 KGRRLYNLARQGKEIEREELPVIIYKNKLLELQGRR--LSLEIECSKGTYIRSIAHDLGQ 187
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
LG G H+ LRR + G E+D MV+ HD+ ++ L
Sbjct: 188 RLGCGAHLGSLRRTKVGKFSEHD-MVSAHDLSHSESL 223
>gi|153855232|ref|ZP_01996398.1| hypothetical protein DORLON_02412 [Dorea longicatena DSM 13814]
gi|149752231|gb|EDM62162.1| tRNA pseudouridine synthase B [Dorea longicatena DSM 13814]
Length = 299
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 121/251 (48%), Gaps = 48/251 (19%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+GIIN+ K +SH+VVA ++ I+ +K GH+GTLDP TG L VC+ +AT+L
Sbjct: 3 HGIINVYKEKGFTSHDVVAKLRGIVGQKKIGHTGTLDPDATGVLPVCLGKATKLCDLLTD 62
Query: 162 AGKEYVCVARL------HDKVPDVA-----------KVARALEALTGAVFQRPPLISAVK 204
K Y V L D +V KV A+E G Q PP+ SA+K
Sbjct: 63 KNKTYEAVLLLGKTTDTQDITGEVLEEKSTEALTEEKVREAIEGFIGDYEQIPPMYSALK 122
Query: 205 -----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
R+ R+ I + ++LE D+ + V +SC GTY+RT+C +G
Sbjct: 123 VNGKKLYELAREGKVIERKARLVKILDIQILEIDLPK--VRMEVSCSKGTYIRTLCHDIG 180
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL--YDNYRDEAYLRRVIMPLEVL 305
LG GG M+ L R R V+ + DA+ L + + E L +++P++ +
Sbjct: 181 EKLGCGGCMESLIRTR----------VSTFRIEDAKTLDEIETLKQEGKLAELLVPIDAM 230
Query: 306 LTSYKRLVVKD 316
SY ++ VKD
Sbjct: 231 FPSYPKITVKD 241
>gi|374296758|ref|YP_005046949.1| tRNA pseudouridine synthase B [Clostridium clariflavum DSM 19732]
gi|359826252|gb|AEV69025.1| tRNA pseudouridine synthase B [Clostridium clariflavum DSM 19732]
Length = 295
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 43/263 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+N+ KP +S +VVA+++R+L+ +K GH+GTLDP G L VCI +AT+ ++
Sbjct: 3 GILNILKPPGMTSFDVVAYLRRLLKEKKIGHTGTLDPGAVGVLPVCIGKATKTIEYLTDK 62
Query: 163 GKEYVCVARL------HDKVPDVAK----------VARALEALTGAVFQRPPLISAVK-- 204
KEY L D +V K + +A+ + G Q PP+ SAVK
Sbjct: 63 DKEYRAELTLGISTDTQDSYGNVLKKCDVNIEKEEIYKAIMSFVGEYNQIPPMYSAVKVE 122
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R R I+ ++ +R V+F + C GTY+RT+C +G
Sbjct: 123 GKKLYELARDGITIERAPRKVAIHSIDIVNIKDNR--VIFDVVCSKGTYIRTLCSDIGEK 180
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG GGHM L R RSG + D + + +Y+ +D + + ++P+E +
Sbjct: 181 LGCGGHMSFLVRTRSG-------SFKLSDSLTLEEIYEFSKDNS-IEDKLLPIEKVFDDL 232
Query: 310 KRLVVKDTTVNAICYGAKLMIPG 332
+R+ + D + GA + + G
Sbjct: 233 ERIDLSDVEAKKLINGAYVKLKG 255
>gi|449450185|ref|XP_004142844.1| PREDICTED: uncharacterized protein LOC101215528 [Cucumis sativus]
Length = 544
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 46/198 (23%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ L+KP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT+LV QG
Sbjct: 327 VVLLNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 386
Query: 164 KEYVCVARL--------------------HDKVPDVAKVARALEALTGAVFQRPPLISAV 203
K Y V RL H K D+ K A + G ++Q PP+ SA+
Sbjct: 387 KSYSGVFRLGEATSTWDADSPVIQREPWEHIKDDDIQKAA---ASFCGEIWQVPPMFSAI 443
Query: 204 KR---------------QLRIRTIYESKLLEYDVDRHL-----VVFWISCEAGTYVRTMC 243
K +L R I + ++D++R L ++F ++C GTY+R++C
Sbjct: 444 KVGGERMYEKARRGESIELSPRQI---SIFKFDIERSLDDRQNLIFRVTCSKGTYIRSLC 500
Query: 244 VHLGLILGVGGHMQELRR 261
LG LG H+ LRR
Sbjct: 501 ADLGKTLGSCAHLTALRR 518
>gi|422882068|ref|ZP_16928524.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK355]
gi|332361832|gb|EGJ39635.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK355]
Length = 292
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEYVCVARL------HDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y L D D+ A + A+E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGYSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVFIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|392428942|ref|YP_006469953.1| tRNA pseudouridine synthase B [Streptococcus intermedius JTH08]
gi|419776544|ref|ZP_14302466.1| tRNA pseudouridine(55) synthase [Streptococcus intermedius SK54]
gi|383845955|gb|EID83355.1| tRNA pseudouridine(55) synthase [Streptococcus intermedius SK54]
gi|391758088|dbj|BAM23705.1| tRNA pseudouridine synthase B [Streptococcus intermedius JTH08]
Length = 292
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 99/209 (47%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + A+E++ G + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILEWTPVTELLEEALIDEAMESMIGEICQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ + F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEEARFRFRVKCSKGTYVRTLSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSKLTRTSSAGMSLDDAL 211
>gi|210622616|ref|ZP_03293276.1| hypothetical protein CLOHIR_01224 [Clostridium hiranonis DSM 13275]
gi|210154117|gb|EEA85123.1| hypothetical protein CLOHIR_01224 [Clostridium hiranonis DSM 13275]
Length = 302
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 46/269 (17%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
II++ KP +S++VV ++IL+++K GH+GTLDP G L +CI RAT++ +
Sbjct: 4 IISILKPTGMTSNDVVGKARKILKIKKIGHTGTLDPDAAGVLPICIGRATKVSELILNKE 63
Query: 164 KEYVCVARL------HD-------KVPDVAKVA-----RALEALTGAVFQRPPLISAVKR 205
K Y+C L +D K PD + A +A E+ G + Q PP SA+K
Sbjct: 64 KSYLCELTLGASTDTYDSSGEILFKAPDDFEYAEDAIRKAFESQMGDIEQYPPKYSALKV 123
Query: 206 Q-----------------LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
L+ R + L +D + V F++ C GTY+R++C +G
Sbjct: 124 NGKRMCDLVRSGREDEIVLKPRKVTIKNLEILSIDNNKVRFYVECSKGTYIRSICYDVGE 183
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
ILG GGHM L R SG +N +T+ ++ + + +E + ++ L S
Sbjct: 184 ILGCGGHMSFLLRTSSGKFNL-ENSITLDEL-------EKFVEEGTVEEHAFDIDYTLDS 235
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFE 337
Y ++V++D NA+ Y + I RF+
Sbjct: 236 YPKIVLRD---NAVKYYSNGGIIESYRFD 261
>gi|85860517|ref|YP_462719.1| tRNA pseudouridine synthase B [Syntrophus aciditrophicus SB]
gi|123517500|sp|Q2LWU1.1|TRUB_SYNAS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|85723608|gb|ABC78551.1| tRNA pseudouridine synthase B [Syntrophus aciditrophicus SB]
Length = 312
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 147/327 (44%), Gaps = 61/327 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ LDK +S +VV +KRIL V K GH+GTLDP TG L +C++ AT+LV+
Sbjct: 3 GILILDKSPGKTSQKVVQEVKRILGVRKAGHAGTLDPLATGVLPLCLNEATKLVQFLSLD 62
Query: 163 GKEYVCV-------------ARLHDKV-PDV--AKVARALEALTGAVFQRPPLISAVKRQ 206
KEY R+ D+ P+V ++ AL+ TG + Q PP SAVK
Sbjct: 63 DKEYRATMLLGVTTETMDIEGRITDRREPEVDEVRIREALQFFTGPISQEPPRYSAVK-- 120
Query: 207 LRIRTIYE------------------SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
+ R +Y S +LE ++ V F ++C GTY+RT+C LG
Sbjct: 121 FKGRPLYSWARKGVDIALPPRTVQVYSSILE-EIALPYVTFRVACSKGTYIRTLCADLGE 179
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LG G M LRR+R G + V++ D+ D + E L RVI PL L +
Sbjct: 180 RLGCGACMSVLRRLRCGCF-TLETAVSLEDIADGKG------RETLLSRVI-PLSDGLRN 231
Query: 309 YKRLVVKDTTVNAICYGAK--------LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
+ + + I G + IP L G+ V +T+ G VA+
Sbjct: 232 VAAIEISEELSGRIRDGFQPDGSTLREYHIPSLAD-------GDMVKFLTSSGGLVAVAR 284
Query: 361 AEMTTAVMATCDHGVVA-RIKRVVMDR 386
+ +A D G A RI RV DR
Sbjct: 285 FLYASDQLAVSDMGQPAVRILRVFHDR 311
>gi|385855427|ref|YP_005901940.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240355]
gi|325204368|gb|ADY99821.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240355]
Length = 306
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 132/302 (43%), Gaps = 55/302 (18%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P KRP+ G++ LDKP SS+ + +R+ R EK GH+G LDP TG L VC
Sbjct: 5 PTKRPV-----NGVLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFG 59
Query: 151 RATRLVKSQQGAGKEYVCVARL------HDKVPDVAKVAR----------ALEALTGAVF 194
AT+ + A K Y +L D ++ AR A +ALTG +
Sbjct: 60 EATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIVATARADISLAEFQTACQALTGDIR 119
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q PP+ SA+K R+ R T+Y + E+D + V + C GT
Sbjct: 120 QVPPMFSALKHEGKPLYEYARKGIVIERKARDITVYAIDIAEFDAPK--AVISVRCSKGT 177
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ + +G H+ LRR + + H + L + RD
Sbjct: 178 YIRTLSEDIAKHIGTFAHLTALRRAETA----GFTIAQSHTLEALANLNETERDS----- 228
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVA 357
+++P +VL++ + + V+ D V+ + G + P RFE D+ V + T GE V
Sbjct: 229 LLLPCDVLVSHFPQTVLNDYAVHMLRCGQR---P---RFEEDLPSDTPVRVYTETGEFVG 282
Query: 358 LG 359
L
Sbjct: 283 LA 284
>gi|297603679|ref|NP_001054428.2| Os05g0108000 [Oryza sativa Japonica Group]
gi|52353567|gb|AAU44133.1| putative tRNA synthase [Oryza sativa Japonica Group]
gi|255675942|dbj|BAF16342.2| Os05g0108000 [Oryza sativa Japonica Group]
Length = 488
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 40/205 (19%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ +DKP +S V ++R++ V+K GH+GTLDP TG LIVC+ +AT++V QG
Sbjct: 271 VVLIDKPKGWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMV 330
Query: 164 KEYVCVARL--------------------HDKVPDVAKVARALEALTGAVFQRPPLISAV 203
K Y V RL H K D+ KVA + G ++Q PP+ SA+
Sbjct: 331 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVAASFR---GEIWQVPPMFSAI 387
Query: 204 K--------RQLRIRTIYES----KLLEYDVDRHL-----VVFWISCEAGTYVRTMCVHL 246
K + R T+ S + ++D++R L ++F + C GTY+R++C L
Sbjct: 388 KVGGEKMYDKARRGETVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADL 447
Query: 247 GLILGVGGHMQELRRVRSGILGEND 271
G LG H+ LRR G ND
Sbjct: 448 GKALGSCAHLTALRRDSIGDFSVND 472
>gi|218195946|gb|EEC78373.1| hypothetical protein OsI_18143 [Oryza sativa Indica Group]
Length = 488
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 40/205 (19%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ +DKP +S V ++R++ V+K GH+GTLDP TG LIVC+ +AT++V QG
Sbjct: 271 VVLIDKPKGWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMV 330
Query: 164 KEYVCVARL--------------------HDKVPDVAKVARALEALTGAVFQRPPLISAV 203
K Y V RL H K D+ KVA + G ++Q PP+ SA+
Sbjct: 331 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVAASFR---GEIWQVPPMFSAI 387
Query: 204 K--------RQLRIRTIYES----KLLEYDVDRHL-----VVFWISCEAGTYVRTMCVHL 246
K + R T+ S + ++D++R L ++F + C GTY+R++C L
Sbjct: 388 KVGGEKMYDKARRGETVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADL 447
Query: 247 GLILGVGGHMQELRRVRSGILGEND 271
G LG H+ LRR G ND
Sbjct: 448 GKALGSCAHLTALRRDSIGDFSVND 472
>gi|392949051|ref|ZP_10314648.1| tRNA pseudouridine synthase B [Lactobacillus pentosus KCA1]
gi|392435769|gb|EIW13696.1| tRNA pseudouridine synthase B [Lactobacillus pentosus KCA1]
Length = 307
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 118/254 (46%), Gaps = 48/254 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +S + VA I+R+ + K GHSGTLDP V G L +CI AT++V+ +
Sbjct: 4 GILPLYKPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVAS 63
Query: 163 GKEYVC-----------------VARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVK 204
GKEY +AR P A + AL +TG + Q PP+ SAVK
Sbjct: 64 GKEYQGSITLGFATTTEDLDGDEIARQAVDAPFSDAAIDAALAQMTGEITQIPPMFSAVK 123
Query: 205 --------------------RQLRIRTIYESKLLEYDVD--RHLVVFWISCEAGTYVRTM 242
R + I + + + YD++ + F ++C GTYVRT+
Sbjct: 124 VNGRRLYDYARNGETVERPQRHVTITSFKQRQPATYDLEAKTQTIYFTVACSKGTYVRTL 183
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
V +G +LGV M +L R++SG D VT ++ + D ++ P+
Sbjct: 184 AVDVGRVLGVPAVMSDLTRLKSGGF-TLDETVTFEEIA-------AHADAGTAGDLLAPI 235
Query: 303 EVLLTSYKRLVVKD 316
+ L+ Y R+ + D
Sbjct: 236 DKALSQYPRVTLTD 249
>gi|299534737|ref|ZP_07048067.1| tRNA pseudouridine synthase B [Lysinibacillus fusiformis ZC1]
gi|298729825|gb|EFI70370.1| tRNA pseudouridine synthase B [Lysinibacillus fusiformis ZC1]
Length = 303
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 129/295 (43%), Gaps = 54/295 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L K +SH+ V +++ILR +K GH+GTLDP V G L +CI +ATR+ + A
Sbjct: 3 GILPLWKERGMTSHDCVFKLRKILRTKKVGHTGTLDPGVEGVLPICIGQATRIAEYLTDA 62
Query: 163 GKEYVCVARLHDKVP-------------DVAKVAR-----ALEALTGAVFQRPPLISAVK 204
GK Y + + + K +R L +LTG + Q PP+ SAVK
Sbjct: 63 GKTYEAIISIGRTTTTEDAEGETVEEDLTIKKFSREQLLEVLASLTGVIEQTPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R R TIY +LL+ Y+ I+C GTY+RT+
Sbjct: 123 VNGKRLYEYARKGESVERPTRQVTIYNLELLDELAHYEGQEITFPVRIACSKGTYIRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM+EL R SG + DN T+ V + + + I+P+E
Sbjct: 183 VQIGEALGYPAHMKELVRTASGTFTQ-DNCFTLAQVAELM-------ETEQVASCILPVE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
L Y + + + I G L LL + I G G+AVA+
Sbjct: 235 YALADYPYIEITNANEKEIFNGQVLPADALLNSHDKIVYG-------INGKAVAV 282
>gi|381210029|ref|ZP_09917100.1| tRNA-pseudouridine 5S synthase [Lentibacillus sp. Grbi]
Length = 309
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 50/267 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +SH+ V I+++ R++K GH+GTLDP+V G L +CI +AT++V
Sbjct: 15 GILPLWKPKGMTSHDCVLKIRKLFRLKKVGHTGTLDPEVEGVLPICIGQATKIVPFLTDT 74
Query: 163 GKEYVCVARLHDKV------------------PDVAKVARALEALTGAVFQRPPLISAVK 204
K Y+ +L P + L+ G + Q PP+ SAVK
Sbjct: 75 KKNYIAAIKLGVSTETEDRQGHVIETREILHPPSQQAIENVLQLFRGYITQIPPMYSAVK 134
Query: 205 -----------------RQLRIRTIYESKLLEYD-VDRHLVVFWIS--CEAGTYVRTMCV 244
R R IY+ + L+ D DR FW+ C GTY+RT+CV
Sbjct: 135 VNGKKLYEYARENEYVERPERSVFIYKLEQLKDDNSDR----FWVQVECSKGTYIRTLCV 190
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
+G LG HM EL R +G + + D D + L R + +++ +E
Sbjct: 191 DIGNRLGFPAHMSELYRTGTGAISKEDTFT----FSDIEQLVKAERH----KELLLSIES 242
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIP 331
LT + + V TT I +G KL P
Sbjct: 243 CLTHMQYINVDQTTRKRILHGQKLPKP 269
>gi|94268660|ref|ZP_01291249.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
gi|93451515|gb|EAT02338.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
Length = 259
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 96/197 (48%), Gaps = 35/197 (17%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR-ATRLVKSQQGA 162
+I LDKP PSS +V ++R L ++K GH+GTLDP +G L+VC+ R ATRLV+
Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72
Query: 163 GKEYVCVARL------HDKVPDVA-----------KVARALEALTGAVFQRPPLISAVKR 205
KEY+ +L HD+ V ++ L G + Q PP SAVK
Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVKH 132
Query: 206 QLRIRT-----------------IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
Q R I+E LE D + +V + C GTY+R++ +G
Sbjct: 133 QGRPLYAYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQ 192
Query: 249 ILGVGGHMQELRRVRSG 265
LG G H+ ELRR+ SG
Sbjct: 193 SLGCGAHLLELRRLASG 209
>gi|357007998|ref|ZP_09072997.1| tRNA pseudouridine synthase B [Paenibacillus elgii B69]
Length = 313
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 108/206 (52%), Gaps = 42/206 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KP +SH+VVA ++RI+R+++ GH+GTLDP+VTG L +CI RATRLV+ Q
Sbjct: 7 GILPVWKPKGFTSHDVVAKVRRIVRIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQEL 66
Query: 163 GKEYVC--------------------VARLHDKV-PDVAKVARALEALTGAVFQRPPLIS 201
K Y V RL +++ P+ +V A+ G + Q PP+ S
Sbjct: 67 PKAYEATLLLGLATDTEDLSGEVLERVERLGERLTPE--QVTAAVLRFIGDIEQVPPMYS 124
Query: 202 AVK-----------------RQLRIRTIYESKLLEYDV--DRHLVVFWISCEAGTYVRTM 242
AVK R+ R TIY ++LE D D V F ++C GTY+RT+
Sbjct: 125 AVKVDGKRLYELARQGVQVERKSRTVTIYGIEVLETDWSGDYPQVKFRVNCSKGTYIRTL 184
Query: 243 CVHLGLILGVGGHMQELRRVRSGILG 268
C +G LGV M EL R +G +G
Sbjct: 185 CADIGQALGVPAVMAELVRTSTGHIG 210
>gi|352081368|ref|ZP_08952246.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 2APBS1]
gi|351683409|gb|EHA66493.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 2APBS1]
Length = 308
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 126/266 (47%), Gaps = 42/266 (15%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+GI+ LDKP SS++ + ++R+LR K GH+G LDP TG L +C AT+L S G
Sbjct: 13 HGIVLLDKPRGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLG 72
Query: 162 AGKEYVCVARL---------------HDKVPDV--AKVARALEALTGAVFQRPPLISAVK 204
A K Y+ RL VP + A + AL L G + Q PP+ SA+K
Sbjct: 73 ARKAYLAECRLGVTTETADSEGEVVRQRPVPQLGAAAIEAALVKLRGRILQVPPMYSALK 132
Query: 205 R---QLRIRT--------------IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
+ +L + +Y +LL D D + + C +GTYVR++ V LG
Sbjct: 133 QGGERLYAKARRGETVEVPPREVEVYRLELLARDGDT--LQLLVECGSGTYVRSLAVDLG 190
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
LG G H+ LRR+ E MVT+ + A DEA L ++P+ L+
Sbjct: 191 EDLGCGAHLTALRRIWVEPFRE-PQMVTLAQLEQAA----EQGDEALL-AWLLPVSAGLS 244
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGL 333
L + +T AI G ++ +PGL
Sbjct: 245 DLPVLRLDETQSMAISRGQQIALPGL 270
>gi|225452300|ref|XP_002272379.1| PREDICTED: uncharacterized protein LOC100259460 [Vitis vinifera]
Length = 520
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 46/208 (22%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ ++KP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT+LV+S QG
Sbjct: 303 VVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMV 362
Query: 164 KEYVCVARL--------------------HDKVPDVAKVARALEALTGAVFQRPPLISAV 203
K Y + RL H K ++ K A + G ++Q PP+ SA+
Sbjct: 363 KGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTA---ASFCGEIWQVPPMFSAI 419
Query: 204 K---------------RQLRIRTIYESKLLEYDVDRHL-----VVFWISCEAGTYVRTMC 243
K +L R I + ++D++R L +VF ++C GTY+R++C
Sbjct: 420 KVGGEKMYEKARRGESVELSPRRI---SIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLC 476
Query: 244 VHLGLILGVGGHMQELRRVRSGILGEND 271
G LG H+ LRR G +D
Sbjct: 477 ADFGKALGSCAHLAALRRDSIGPYSADD 504
>gi|296087588|emb|CBI34844.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 46/208 (22%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ ++KP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT+LV+S QG
Sbjct: 285 VVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMV 344
Query: 164 KEYVCVARL--------------------HDKVPDVAKVARALEALTGAVFQRPPLISAV 203
K Y + RL H K ++ K A + G ++Q PP+ SA+
Sbjct: 345 KGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTA---ASFCGEIWQVPPMFSAI 401
Query: 204 K---------------RQLRIRTIYESKLLEYDVDRHL-----VVFWISCEAGTYVRTMC 243
K +L R I + ++D++R L +VF ++C GTY+R++C
Sbjct: 402 KVGGEKMYEKARRGESVELSPRRI---SIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLC 458
Query: 244 VHLGLILGVGGHMQELRRVRSGILGEND 271
G LG H+ LRR G +D
Sbjct: 459 ADFGKALGSCAHLAALRRDSIGPYSADD 486
>gi|296313982|ref|ZP_06863923.1| tRNA pseudouridine synthase B [Neisseria polysaccharea ATCC 43768]
gi|296839412|gb|EFH23350.1| tRNA pseudouridine synthase B [Neisseria polysaccharea ATCC 43768]
Length = 306
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 132/302 (43%), Gaps = 55/302 (18%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P KRP+ G++ LDKP + SS+ + +R+ EK GH+G LDP TG L VC
Sbjct: 5 PAKRPV-----NGVLLLDKPEDLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFG 59
Query: 151 RATRLVKSQQGAGKEYVCVARL------HDKVPDVAKVAR----------ALEALTGAVF 194
AT+ + A K Y +L D ++ AR A +ALTG +
Sbjct: 60 EATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIVATARANISLAEFQTACQALTGNIR 119
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q PP+ SA+K R+ R T+Y + E+D + V + C GT
Sbjct: 120 QVPPMFSALKHEGKPLYEYARKGIVIERKARDITVYAIDIAEFDAPK--AVISVRCSKGT 177
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ + +G H+ LRR + + H + L + RD
Sbjct: 178 YIRTLSEDIAKHIGTFAHLTALRRTETA----GFTIAQSHTLEALANLDETERDS----- 228
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVA 357
+++P +VL++ + + V+ D V+ I G + P RFE D+ + + T GE V
Sbjct: 229 LLLPCDVLVSHFPQTVLNDYAVHMIQCGQR---P---RFEEDLPFNTPIRVYTKTGEFVG 282
Query: 358 LG 359
L
Sbjct: 283 LA 284
>gi|389807675|ref|ZP_10204212.1| tRNA pseudouridine synthase B [Rhodanobacter thiooxydans LCS2]
gi|388443800|gb|EIL99935.1| tRNA pseudouridine synthase B [Rhodanobacter thiooxydans LCS2]
Length = 308
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 126/264 (47%), Gaps = 38/264 (14%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+GI+ LDKP SS++ + ++R+LR K GH+G LDP TG L +C AT+L S G
Sbjct: 13 HGIVLLDKPPGLSSNQALQTVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLG 72
Query: 162 AGKEYVCVARL---------------HDKVPDV--AKVARALEALTGAVFQRPPLISAVK 204
A K Y+ RL VP++ A+V AL L G + Q PP+ SA+K
Sbjct: 73 ARKAYLAECRLGVTTDTADSEGEVVQQRPVPELDDARVEAALARLRGRILQVPPMYSALK 132
Query: 205 R---------------QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
+ +L R + +L + + + C +GTYVR++ V LG
Sbjct: 133 QGGERLYAKARRGETVELAPREVEVHRLELLAREGDTLQLRVECGSGTYVRSLAVDLGED 192
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR+ E MVT+ + A DEA L ++P+ L+
Sbjct: 193 LGCGAHLTALRRIWVEPFRE-PRMVTLTQLEQAV----EQGDEALL-AWLLPVSAGLSDL 246
Query: 310 KRLVVKDTTVNAICYGAKLMIPGL 333
L + +T AI G ++++PGL
Sbjct: 247 PVLRLDETQSMAISRGQQIVLPGL 270
>gi|253573570|ref|ZP_04850913.1| tRNA pseudouridine synthase B [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847098|gb|EES75103.1| tRNA pseudouridine synthase B [Paenibacillus sp. oral taxon 786
str. D14]
Length = 305
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 36/207 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + KPA +SH+VVA + IL++++ GH+GTLDP VTG L +C+ RATR+V+ Q
Sbjct: 6 GILPIHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQDL 65
Query: 163 GKEYVCVARL------HDKVPDVAK-----------VARALEALTGAVFQRPPLISAVK- 204
KEY L D ++ + V R L G + Q PP+ SA+K
Sbjct: 66 PKEYEATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALKQ 125
Query: 205 ----------------RQLRIRTIYESKLLEYDVD--RHLVVFWISCEAGTYVRTMCVHL 246
R+ R TIY+ +LL + + + F C GTY+RT+CV +
Sbjct: 126 DGKRLYELAREGKTVERKPREVTIYQLELLAFHPEGLHPRISFRALCSKGTYIRTLCVDI 185
Query: 247 GLILGVGGHMQELRRVRSGILGENDNM 273
G LGV M EL+R S + E+ +
Sbjct: 186 GRALGVPAAMTELKRTMSAGITESHCL 212
>gi|218190473|gb|EEC72900.1| hypothetical protein OsI_06724 [Oryza sativa Indica Group]
Length = 274
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 59/70 (84%)
Query: 89 YSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVC 148
+SPLK+P+ ++ YG+INL+K +N SHEV+ W K +L +EKT H+GTLDPKVTGNLIVC
Sbjct: 17 HSPLKQPIAKHLCYGVINLNKLSNLLSHEVITWNKHLLHIEKTSHNGTLDPKVTGNLIVC 76
Query: 149 IDRATRLVKS 158
+DRATRLVKS
Sbjct: 77 VDRATRLVKS 86
>gi|228986953|ref|ZP_04147079.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772731|gb|EEM21171.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 307
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++E + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQNET-VESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|47569087|ref|ZP_00239776.1| tRNA pseudouridine synthase B [Bacillus cereus G9241]
gi|47554249|gb|EAL12611.1| tRNA pseudouridine synthase B [Bacillus cereus G9241]
Length = 307
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++E + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQNET-VESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|171779510|ref|ZP_02920474.1| hypothetical protein STRINF_01355 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379705344|ref|YP_005203803.1| tRNA pseudouridine synthase B [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282127|gb|EDT47558.1| tRNA pseudouridine synthase B [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374682043|gb|AEZ62332.1| tRNA pseudouridine synthase B [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 293
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 51/268 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL +K GH GTLDP V G L + + +ATR+++ A
Sbjct: 4 GIINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMTEA 63
Query: 163 GKEY---VCV----------ARLHDKVPDVAK-----VARALEALTGAVFQRPPLISAVK 204
GK Y +C+ + +K P + V +A+E+ G + Q PP+ SAVK
Sbjct: 64 GKVYRGQICLGFSTTTEDASGEVVEKTPVSTELTEDTVDQAMESFIGDITQIPPMYSAVK 123
Query: 205 -----------------RQLRIRTIYESKL---LEYDVDRHLVVFWISCEAGTYVRTMCV 244
R R TIY+ K LE+ D F ++C GTY+RT+ V
Sbjct: 124 VDGKRLYEYARAGQTVERPERHVTIYDFKRTSPLEFKDDCCYFDFEVACSKGTYIRTLSV 183
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMD--AQWLYDNYRDEAYLRRVIMPL 302
LG LG G HM L R S L D + T+ ++ + AQ D++ ++P+
Sbjct: 184 DLGKSLGFGSHMSYLERQASAGLQLEDAL-TLSEITEKVAQ---DDF-------SFLLPI 232
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMI 330
E + R+ + + V I +G K+ +
Sbjct: 233 EYGVMDLPRVALTEDQVTEISFGRKIAL 260
>gi|14719313|gb|AAK73131.1|AC079022_4 putative tRNA synthase [Oryza sativa]
Length = 525
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 40/205 (19%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ +DKP +S V ++R++ V+K GH+GTLDP TG LIVC+ +AT++V QG
Sbjct: 308 VVLIDKPKGWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMV 367
Query: 164 KEYVCVARL--------------------HDKVPDVAKVARALEALTGAVFQRPPLISAV 203
K Y V RL H K D+ KVA + G ++Q PP+ SA+
Sbjct: 368 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVA---ASFRGEIWQVPPMFSAI 424
Query: 204 K--------RQLRIRTIYES----KLLEYDVDRHL-----VVFWISCEAGTYVRTMCVHL 246
K + R T+ S + ++D++R L ++F + C GTY+R++C L
Sbjct: 425 KVGGEKMYDKARRGETVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADL 484
Query: 247 GLILGVGGHMQELRRVRSGILGEND 271
G LG H+ LRR G ND
Sbjct: 485 GKALGSCAHLTALRRDSIGDFSVND 509
>gi|229031440|ref|ZP_04187440.1| tRNA pseudouridine synthase B [Bacillus cereus AH1271]
gi|228729729|gb|EEL80709.1| tRNA pseudouridine synthase B [Bacillus cereus AH1271]
Length = 307
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 121/251 (48%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++V+
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIVQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|323701869|ref|ZP_08113539.1| tRNA pseudouridine synthase B [Desulfotomaculum nigrificans DSM
574]
gi|323533173|gb|EGB23042.1| tRNA pseudouridine synthase B [Desulfotomaculum nigrificans DSM
574]
Length = 310
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 50/296 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP +SH+VV ++++I +K GH+GTLDP TG L VC+ +ATRL +
Sbjct: 3 GIINVLKPPGMTSHDVVYFVRKITGAKKCGHTGTLDPGATGVLPVCLGKATRLARFVTEG 62
Query: 163 GKEYVCVARL------HDKVPDVA-----------KVARALEALTGAVFQRPPLISAVK- 204
K Y L D D+ ++ L + G + Q PP+ SA+K
Sbjct: 63 NKSYRAEMTLGLSTTTQDAFGDIVEQKDAFQIYPEQIDNLLPSFIGDIKQTPPMASAIKI 122
Query: 205 ---------RQ-------LRIRTIYESKLLE---YDVDRHLVVFWISCEAGTYVRTMCVH 245
RQ RI TI++ ++++ + ++F ++C GTYVRT+C
Sbjct: 123 NGQRLYDLARQGQSIDVPTRIVTIFDLRVVQSNNWGTAHPRILFDVTCSKGTYVRTLCAD 182
Query: 246 LGLILGVGGHMQELRRVRSGILGEN-DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
+G LG G +M L R R + G + D+ T+ D+ D + ++P+
Sbjct: 183 IGRALGCGAYMSFLLRTR--VAGFSIDHAYTLEDLTDLA-------GAGQISLAVVPMVQ 233
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
+ + + T A+C GA L G+ R I+ E+ ++ G+ + LGI
Sbjct: 234 AVNHLPLVEINPTAQRAVCSGATLYPAGVKRISGPIK--EDAMVRVQSGQ-ILLGI 286
>gi|296129361|ref|YP_003636611.1| tRNA pseudouridine synthase B [Cellulomonas flavigena DSM 20109]
gi|296021176|gb|ADG74412.1| tRNA pseudouridine synthase B [Cellulomonas flavigena DSM 20109]
Length = 336
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 100/202 (49%), Gaps = 42/202 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VVA ++R+ K GH+GTLDP TG L+V I RATRL+ GA
Sbjct: 40 GLLVVDKPAGWTSHDVVARVRRLASTRKVGHAGTLDPMATGVLVVGIGRATRLLTYVTGA 99
Query: 163 GKEYVCVARLHDKV------------PDVAKVARA-----LEALTGAVFQRPPLISAVK- 204
K+Y RL D + +AR + ALTG V Q P +SA+K
Sbjct: 100 DKDYTATVRLGVVTTTDDAEGETLARTDASGIARGDLDAQVAALTGDVQQVPSSVSAIKV 159
Query: 205 --------------RQLRIRTIYESKLLEYDVDRHLVV---------FWISCEAGTYVRT 241
+L R ++ ++ DV R VV ++C +GTYVR
Sbjct: 160 DGQRAYARVRAGEDVELAARPVHVARFAVLDV-RPGVVDEVPVLDVDVEVTCSSGTYVRA 218
Query: 242 MCVHLGLILGVGGHMQELRRVR 263
+ LG LGVGGH+ LRR R
Sbjct: 219 LARDLGAALGVGGHLTALRRTR 240
>gi|345857838|ref|ZP_08810259.1| tRNA pseudouridine synthase B [Desulfosporosinus sp. OT]
gi|344329085|gb|EGW40442.1| tRNA pseudouridine synthase B [Desulfosporosinus sp. OT]
Length = 322
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 95/197 (48%), Gaps = 34/197 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP +S +VV W++RIL+ +K GH+GTLDP V G L +C+ + TRL +
Sbjct: 3 GIINVLKPPGMTSSDVVVWMRRILKTKKIGHTGTLDPGVAGVLPLCVGKGTRLAEYITEQ 62
Query: 163 GKEYVCVARL------HDKVPDVAKVARA----------LEALTGAVFQRPPLISAVKRQ 206
GK Y+ D +V L G + Q PP+ SAV+R+
Sbjct: 63 GKAYLAEVAFGITTDTQDAFGKTTQVTSTDLSQSNLESVLPHFVGKISQTPPMYSAVRRE 122
Query: 207 -----------------LRIRTIYESKLLE-YDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R +IY+ +L + Y+ + + I C GTY+RT+C LG
Sbjct: 123 GKHLYEYARQGIDIEIAPREVSIYKLELKQWYEREFPRAILNIECSKGTYIRTLCHDLGQ 182
Query: 249 ILGVGGHMQELRRVRSG 265
LG G HM L R+RSG
Sbjct: 183 ALGCGAHMSNLLRIRSG 199
>gi|354559931|ref|ZP_08979172.1| tRNA pseudouridine synthase B [Desulfitobacterium metallireducens
DSM 15288]
gi|353539660|gb|EHC09143.1| tRNA pseudouridine synthase B [Desulfitobacterium metallireducens
DSM 15288]
Length = 294
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 34/197 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+IN+ KP +S +VV W+++ L K GH+GTLDP+V G L +C+ RATRL +
Sbjct: 3 GVINVHKPVGMTSSDVVVWVRKHLNTRKVGHTGTLDPEVNGVLPICVGRATRLAEYLTDQ 62
Query: 163 GKEYVCVAR--------------LHDKVPDVAK--VARALEALTGAVFQRPPLISAVKRQ 206
GK Y LH P+V + L G++ Q PP+ SAV+ Q
Sbjct: 63 GKSYRAEITFGIVTDTQDAQGEILHSIPPEVNGDDFLKILPQFLGSIQQIPPMYSAVRHQ 122
Query: 207 --------------LRIRTIYESKLLEY----DVDRHLVVFWISCEAGTYVRTMCVHLGL 248
+R + LE+ + D VF + C GTY+RT+C +G
Sbjct: 123 GKHLYDLARQGIEVVRASRTINIRRLEFISWQESDYPKAVFEVDCSKGTYIRTLCQDIGD 182
Query: 249 ILGVGGHMQELRRVRSG 265
+G G HM +L R+RSG
Sbjct: 183 AMGCGAHMSKLVRLRSG 199
>gi|227833348|ref|YP_002835055.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
gi|262184334|ref|ZP_06043755.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
gi|254764883|sp|C3PH13.1|TRUB_CORA7 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|227454364|gb|ACP33117.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
Length = 297
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 97/208 (46%), Gaps = 50/208 (24%)
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
R G++ +DKPA +SH+VV ++R R K GH+GTLDP TG L+V I+R T+ +
Sbjct: 7 RSGLVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMV 66
Query: 161 GAGKEYVCVARLHDKV-------------PDVA----KVARALEALTGAVFQRPPLISAV 203
+ K Y RL P A +AR + ALTG + QRP +SA+
Sbjct: 67 ASTKAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAI 126
Query: 204 K-----RQLRIR---------------------TIYESKLLEYDVDRHLVVFWISCEAGT 237
K R+R T E + ++ DV ++C +GT
Sbjct: 127 KVDGKRAHERVRAGEEVELPARPVTVSRFDILATRREGEFIDLDVS-------VACSSGT 179
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSG 265
Y+R++ LG LGVGGH+ LRR G
Sbjct: 180 YIRSLARDLGEALGVGGHLTALRRTEVG 207
>gi|158523041|ref|YP_001530911.1| tRNA pseudouridine synthase B [Desulfococcus oleovorans Hxd3]
gi|158511867|gb|ABW68834.1| tRNA pseudouridine synthase B [Desulfococcus oleovorans Hxd3]
Length = 303
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 96/197 (48%), Gaps = 34/197 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII ++KPA +S +VVA +KR K GH+GTLDP TG L+ I+RATRL + +
Sbjct: 7 GIIVVNKPAGITSAKVVALVKRHTGARKVGHAGTLDPFATGVLVCLINRATRLAEFFLAS 66
Query: 163 GKEYVCVARL------HDKVPDVAKVA-------------RALEALTGAVFQRPPLISAV 203
K Y V L D+ V V R + + G QRPP SAV
Sbjct: 67 DKTYAAVMCLGVETDTQDRTGTVTAVCDTSLQTVSDDAIRRVMTSFEGEGEQRPPAFSAV 126
Query: 204 KRQ----LRI-----------RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
K Q R+ R + S L ++ +V F ++C +GTY+RT+C +G
Sbjct: 127 KHQGVPLYRLARQGVYVEKPARPVVISSLTVQEICWPMVRFEVTCSSGTYIRTLCADMGR 186
Query: 249 ILGVGGHMQELRRVRSG 265
LG GGH+ L R R+G
Sbjct: 187 ALGCGGHLYALERTRAG 203
>gi|389798951|ref|ZP_10201959.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 116-2]
gi|388444306|gb|EIM00426.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 116-2]
Length = 308
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 123/266 (46%), Gaps = 42/266 (15%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+GI+ LDKP SS++ + ++R+LR K GH+G LDP TG L +C AT+L S G
Sbjct: 13 HGIVLLDKPRGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLG 72
Query: 162 AGKEYVCVARL---------------HDKVPDV--AKVARALEALTGAVFQRPPLISAVK 204
A K Y+ RL VP + A + AL L G + Q PP+ SA+K
Sbjct: 73 ARKAYLAECRLGVTTETADSEGEVVRQRPVPQLGAAAIEAALVKLRGRILQVPPMYSALK 132
Query: 205 R-----------------QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
+ R +Y +LL D D + + C +GTYVR++ V LG
Sbjct: 133 QGGERLYAKARRGETVEVPPREVEVYRLELLARDGDT--LQLLVECGSGTYVRSLAVDLG 190
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
LG G H+ LRR+ E MVT+ + A DEA L ++P+ L
Sbjct: 191 EDLGCGAHLTALRRIWVEPFRE-PQMVTLAQLEQAA----EQGDEALL-AWLLPVSAGLP 244
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGL 333
L + +T AI G ++ +PGL
Sbjct: 245 DLPVLRLDETQSMAISRGQQIALPGL 270
>gi|51892663|ref|YP_075354.1| tRNA pseudouridine 55 synthase [Symbiobacterium thermophilum IAM
14863]
gi|62901281|sp|Q67P83.1|TRUB_SYMTH RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|51856352|dbj|BAD40510.1| tRNA pseudouridine 55 synthase [Symbiobacterium thermophilum IAM
14863]
Length = 299
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 99/198 (50%), Gaps = 35/198 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++NL KP +SH+VVA+++R L V+K GH+GTLDP V G L VC+ RATRL + G+
Sbjct: 14 GVLNLLKPPGMTSHDVVAFVRRALGVKKAGHTGTLDPGVAGVLPVCVGRATRLAEYIAGS 73
Query: 163 GKEY-----VCVAR-LHDKVPDVAK-----------VARALEALTGAVFQRPPLISAVK- 204
K Y VA D +V VA AL G + Q PP++SAVK
Sbjct: 74 DKAYRAEITFGVATDTQDGFGEVVAEADASHLTRGDVAYALTRFHGPIEQVPPMVSAVKV 133
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFW-ISCEAGTYVRTMCVHLG 247
R+ R I+ +LL++ V + + C GTYVRT+ LG
Sbjct: 134 GGKRLYELARKGVEVEREPRRVFIHRLQLLDFRPGPRPVAYIDVVCSKGTYVRTLAHDLG 193
Query: 248 LILGVGGHMQELRRVRSG 265
L VG H+ L R RSG
Sbjct: 194 RFLQVGAHLSYLVRTRSG 211
>gi|297811569|ref|XP_002873668.1| hypothetical protein ARALYDRAFT_488288 [Arabidopsis lyrata subsp.
lyrata]
gi|297319505|gb|EFH49927.1| hypothetical protein ARALYDRAFT_488288 [Arabidopsis lyrata subsp.
lyrata]
Length = 538
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 34/202 (16%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ ++KP +S V ++R+++V+K GH+GTLDP TG LIVCI +AT++V QG
Sbjct: 321 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCIGKATKVVDRYQGMI 380
Query: 164 KEYVCVARLHDKV-------PDVAK----------VARALEALTGAVFQRPPLISAVK-- 204
K Y V RL + P + + + +AL + G ++Q PP+ SA+K
Sbjct: 381 KCYSGVFRLGEATSTLDADSPVIQREPWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 440
Query: 205 ------RQLRIRTIYES----KLLEYDVDRHL-----VVFWISCEAGTYVRTMCVHLGLI 249
+ R T+ S + ++D++R L ++F + C GTY+R++C L
Sbjct: 441 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 500
Query: 250 LGVGGHMQELRRVRSGILGEND 271
LG H+ LRR G ND
Sbjct: 501 LGSCAHLTALRRDSIGEYSAND 522
>gi|239991156|ref|ZP_04711820.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 11379]
gi|291448153|ref|ZP_06587543.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 15998]
gi|291351100|gb|EFE78004.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 15998]
Length = 299
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 114/241 (47%), Gaps = 56/241 (23%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKP+ +SH+VVA ++ I R + GH+GTLDP TG L++ + RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQRATKLLGHLALT 69
Query: 163 GKEYVCVARL-HDKV-----------PDVAKVAR-----ALEALTGAVFQRPPLISAVK- 204
KEY+ RL D + D +KV R + ALTGA+ Q P +SA+K
Sbjct: 70 EKEYLGTIRLGQDTITDDAEGEITSSTDASKVTREGIDAGVAALTGAIMQVPSKVSAIKI 129
Query: 205 --------------RQLRIRTIYESKLLEYDVDRHL---------VVFWISCEAGTYVRT 241
++ R + S YDV + +V + C +GTY+R
Sbjct: 130 DGKRSYARVRGGEEFEIPARPVTVSSFRVYDVREAVAEDGTPVLDLVVSVVCSSGTYIRA 189
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+ LG LGVGGH+ LRR R G G +DA D +++E +MP
Sbjct: 190 LARDLGAGLGVGGHLTALRRTRVGPYG-----------LDAARTLDQHQEEL----TVMP 234
Query: 302 L 302
+
Sbjct: 235 V 235
>gi|422860365|ref|ZP_16907009.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK330]
gi|327469561|gb|EGF15030.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK330]
Length = 292
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 99/209 (47%), Gaps = 38/209 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRLV+ Q
Sbjct: 3 GIINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEE 62
Query: 163 GKEY------VCVARLHDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y C D D+ A + +E++TG + Q PP+ SAVK
Sbjct: 63 GKVYEGEITLGCSTTTEDASGDILEWTPVTELLEEALIDEVMESMTGEIRQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + + + Y+ ++ F + C GTYVR + V
Sbjct: 123 VNGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEGEQARFRFRVKCGKGTYVRILSV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNM 273
LG LG HM +L R S + +D +
Sbjct: 183 DLGAKLGFASHMSQLTRTSSAGMSLDDAL 211
>gi|229918671|ref|YP_002887317.1| tRNA pseudouridine synthase B [Exiguobacterium sp. AT1b]
gi|229470100|gb|ACQ71872.1| tRNA pseudouridine synthase B [Exiguobacterium sp. AT1b]
Length = 302
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 123/265 (46%), Gaps = 47/265 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDK A +SH+ V ++++ + +K GH+GTLDP+VTG L +C+ RAT+L +
Sbjct: 5 GVLVLDKDAGMTSHDCVFKLRKLFQTKKVGHTGTLDPEVTGVLPICLGRATKLSRFITDE 64
Query: 163 GKEYVCVARL---------HDKVP----------DVAKVARALEALTGAVFQRPPLISAV 203
GK YV + H +V D +++ A+ LTG + Q PP SAV
Sbjct: 65 GKRYVAEVTIGTATMTEDAHGEVVAQKSVTPNDLDESQIDEAMRQLTGMIEQIPPYYSAV 124
Query: 204 K--------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMC 243
K R + I + + L ++ D I C GTY+RT+
Sbjct: 125 KVNGKKLYEYARKGQTVERPRRTVEIHRLERTSELTFEADVCRFRMEIDCGKGTYIRTLA 184
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM ELRR SG E +N V++ + + + E L VI PLE
Sbjct: 185 VQIGEKLGYPAHMSELRRTSSGTF-EEENAVSLETLQSLETV------EERLAHVI-PLE 236
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKL 328
++ + + + + I G KL
Sbjct: 237 DVIKRWPAITIPKNREHYIRNGGKL 261
>gi|333923677|ref|YP_004497257.1| tRNA pseudouridine synthase B [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749238|gb|AEF94345.1| tRNA pseudouridine synthase B [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 310
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 138/296 (46%), Gaps = 50/296 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ KP +SH+VV ++++I +K GH+GTLDP TG L VC+ +ATRL +
Sbjct: 3 GIINVLKPPGMTSHDVVYFVRKITGAKKCGHTGTLDPGATGVLPVCLGKATRLARFVTEG 62
Query: 163 GKEYVCVARL------HDKVPDVAKVARA-----------LEALTGAVFQRPPLISAVK- 204
K Y L D D+ ++ A L + G + Q PP+ SA+K
Sbjct: 63 NKSYRAEMTLGVSTTTQDAFGDIVELKDAFQIYPEQIDNLLPSFIGDIKQTPPMASAIKI 122
Query: 205 ---------RQ-------LRIRTIYESKLLE---YDVDRHLVVFWISCEAGTYVRTMCVH 245
RQ RI TI++ ++++ + ++F ++C GTYVRT+C
Sbjct: 123 NGQRLYDLARQGQSIDVPTRIVTIFDLRVVQSNNWGTAHPRILFDVTCSKGTYVRTLCAD 182
Query: 246 LGLILGVGGHMQELRRVRSGILGEN-DNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
+G LG G +M L R R + G + D+ T+ D+ D + ++P+
Sbjct: 183 IGRALGCGAYMSFLLRTR--VAGFSIDHAYTLEDLTDLA-------GAGQISLAVVPMVQ 233
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
+ + + T A+C GA L G+ R I+ E+ ++ G+ + LGI
Sbjct: 234 AVNHLPLVEINPTAQRAVCSGATLYPAGVKRISGPIK--EDAMVRVQSGQNL-LGI 286
>gi|254440182|ref|ZP_05053676.1| tRNA pseudouridine synthase B, putative [Octadecabacter antarcticus
307]
gi|198255628|gb|EDY79942.1| tRNA pseudouridine synthase B, putative [Octadecabacter antarcticus
307]
Length = 301
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 130/291 (44%), Gaps = 47/291 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G + +DKPA +S VV +K L +K GH+GTLDP TG L V + AT+ V
Sbjct: 11 HGWLVVDKPAGITSTSVVNKVKWALDAKKAGHAGTLDPDATGVLAVALGEATKTVPYITD 70
Query: 162 AGKEYVCVARLHDKV----------------PDVAKVARALEALTGAVFQRPPLISAVK- 204
A K Y RL K P ++ L G + Q PPL SAVK
Sbjct: 71 ALKAYTFTVRLGQKTNTDDAEGEITAQSDTRPTDDEIKAQLAQFVGDIMQTPPLFSAVKI 130
Query: 205 --------------RQLRIRTIYESKLLEYD-VDRHLVVFWISCEAGTYVRTMCVHLGLI 249
++ R ++ +LL D D V ++C G YVR + LG
Sbjct: 131 DGERAYKRARDGEEFEIAARPLWVEELLLTDRPDVDHVTLEMTCGKGGYVRAIARDLGDA 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG GH++ELRRV SG D VT+ D +D D L +I+PLE LT
Sbjct: 191 LGCFGHVRELRRVWSGPFDAKDG-VTL-DQLDTHAKTDG------LDHLILPLEAGLTDL 242
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
R+ +++V + G ++ G D+E G+E G+A+A+GI
Sbjct: 243 PRVHCPESSVTKLRNGNPALVMG------DVEYGDE-CWADHSGQAIAVGI 286
>gi|260581411|ref|ZP_05849225.1| tRNA pseudouridine synthase B [Haemophilus influenzae RdAW]
gi|260091953|gb|EEW75902.1| tRNA pseudouridine synthase B [Haemophilus influenzae RdAW]
Length = 306
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 48/292 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAEGQVVETREVNLETQQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY+ + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYNAP--FLTLEVHCSKGTYIRTLVDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMMPINELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
L + AI +G + ++F N+ ++ +V L + E + LG+A
Sbjct: 246 PALHLDAEQSKAIGFGQR------VKFANEQQLSGQVRLFS--AENLFLGVA 289
>gi|345019845|ref|ZP_08783458.1| tRNA-pseudouridine 5S synthase [Ornithinibacillus scapharcae TW25]
Length = 298
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 43/275 (15%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +SH+ V ++++ + +K GH+GTLDP+V G L +CI +AT++V+
Sbjct: 3 GILPLWKPKGYTSHDCVMKVRKLYKTKKVGHTGTLDPEVEGVLPICIGQATKIVQFLTDT 62
Query: 163 GKEYVCVARLH------------------DKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y L D P ++ L++ G + Q PP+ SAVK
Sbjct: 63 TKVYQAELTLGSTTETEDAYGEIVDEVTVDNFPTKQEIENVLQSFKGDIIQIPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
R R TI++ + D ++H + F ++C GTY+RT+ V +G
Sbjct: 123 VNGKKLYEYARANQEVERPERKVTIHDISYISSDPEQHKIQFQVTCSKGTYIRTLSVDIG 182
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
+LG HM L R+ +G + + D ++ + + +D L +++P+ +T
Sbjct: 183 KVLGYPAHMSHLVRIETGSIHQRDT-------VNFETIEKACQDGVEL-ELLLPITRGIT 234
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L V + T + G KL+ P + N +V
Sbjct: 235 HLATLEVDEQTKWKVFNGQKLLKPDTILHTNPFKV 269
>gi|384511146|ref|YP_005690724.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
PAT10]
gi|341825085|gb|AEK92606.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
PAT10]
Length = 303
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 48/245 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VV ++RI ++ GH+GTLDP TG L+V I+R T+ + +
Sbjct: 9 GLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68
Query: 163 GKEYVCVARL------HDKVPDV--------------AKVARALEALTGAVFQRPPLISA 202
K Y RL DK +V A +A + TG + QRP +SA
Sbjct: 69 TKSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSA 128
Query: 203 VK------RQL-----------RIRTIYESKLLEYDVDRHLVVFWI------SCEAGTYV 239
+K Q+ R TIY +L D+ R L + +I +C +GTY+
Sbjct: 129 IKINGKRAHQMVREGQEVEIPPRPVTIYNFDVL--DISRSLPLEFIDIEVEVTCSSGTYI 186
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
R++ LG L VGGH+ LRR+ G +D +T+ D+ A L + DE+ L R
Sbjct: 187 RSLARDLGSALNVGGHLTALRRLSVGPFSLSDT-ITLDDLTAAPKLSLSL-DES-LTRCY 243
Query: 300 MPLEV 304
+ LE+
Sbjct: 244 LTLEI 248
>gi|182435601|ref|YP_001823320.1| tRNA pseudouridine synthase B [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326776235|ref|ZP_08235500.1| tRNA pseudouridine synthase B [Streptomyces griseus XylebKG-1]
gi|226708673|sp|B1VYN2.1|TRUB_STRGG RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|178464117|dbj|BAG18637.1| putative tRNA pseudouridine synthase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326656568|gb|EGE41414.1| tRNA pseudouridine synthase B [Streptomyces griseus XylebKG-1]
Length = 299
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 57/271 (21%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKP+ +SH+VVA ++ I R + GH+GTLDP TG L++ + RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQRATKLLGHLALT 69
Query: 163 GKEYVCVARL-HDKVPDVAK-----------VARA-----LEALTGAVFQRPPLISAVK- 204
KEY+ RL D V D A+ V RA + ALTG + Q P +SA+K
Sbjct: 70 EKEYLGTIRLGQDTVTDDAEGEITSSTDASGVTRASIDAGVAALTGRIMQVPSKVSAIKI 129
Query: 205 --------------RQLRIRTIYESKLLEYDVDRHL---------VVFWISCEAGTYVRT 241
++ R + S YDV + +V + C +GTY+R
Sbjct: 130 DGKRSYARVRGGEEFEIPARPVTISSFRVYDVREAVAEDGTPVLDLVVSVVCSSGTYIRA 189
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+ LG LGVGGH+ LRR R G G +DA D +++E +MP
Sbjct: 190 IARDLGAGLGVGGHLTALRRTRVGPYG-----------LDAARTLDQHQEEL----TVMP 234
Query: 302 L-EVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
+ E +++ R V + + G +L +P
Sbjct: 235 VAEAAASAFPRWDVDEKRAKLLLNGVRLDMP 265
>gi|404329095|ref|ZP_10969543.1| tRNA pseudouridine synthase B [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 303
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 52/272 (19%)
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
++DY G++ L KP +SH+ VA ++++L+ +K GH+GTLDP+V G L++C+ RAT++
Sbjct: 1 MIDY--NGLLPLYKPRGMTSHDCVARLRKLLKFKKIGHTGTLDPEVDGVLVLCLGRATKI 58
Query: 156 VKSQQGAGKEYVCVARL------HDKVPDVAK------------VARALEALTGAVFQRP 197
+ K Y RL D+ V + + + ++ TG V Q
Sbjct: 59 AQYLLEFNKAYEGTIRLGTATTTEDEAGAVTESRELGEDFSRRDLEQVFQSFTGNVRQTV 118
Query: 198 PLISAVK-----------------RQLRIRTIYESKLL-EYDVDRHLVVFWISCEAGTYV 239
P+ SAVK R +R IYE KL +V R + F++SC GTYV
Sbjct: 119 PIYSAVKVNGKKLYEYAREGLSVARPVREIHIYELKLTGNAEVYRSDIPFFVSCSKGTYV 178
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD---NYRDEAYLR 296
RT+ V +G LG H++ L RV++G T+ D W +D + D +
Sbjct: 179 RTLAVDIGRKLGYPAHLKSLTRVQAGSF-------TLADC----WSFDRIESLLDSGHFC 227
Query: 297 RVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
+ P+E L+ + V D T + +GA L
Sbjct: 228 DCLKPIECGLSHMDKWTVDDRTAEEVVHGAVL 259
>gi|47095913|ref|ZP_00233516.1| tRNA pseudouridine synthase B [Listeria monocytogenes str. 1/2a
F6854]
gi|254912002|ref|ZP_05262014.1| tRNA pseudouridine synthase B [Listeria monocytogenes J2818]
gi|254936329|ref|ZP_05268026.1| tRNA pseudouridine synthase B [Listeria monocytogenes F6900]
gi|386043639|ref|YP_005962444.1| tRNA pseudouridine synthase B [Listeria monocytogenes 10403S]
gi|386046980|ref|YP_005965312.1| tRNA pseudouridine synthase B [Listeria monocytogenes J0161]
gi|404410626|ref|YP_006696214.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC5850]
gi|47015659|gb|EAL06589.1| tRNA pseudouridine synthase B [Listeria monocytogenes str. 1/2a
F6854]
gi|258608919|gb|EEW21527.1| tRNA pseudouridine synthase B [Listeria monocytogenes F6900]
gi|293589966|gb|EFF98300.1| tRNA pseudouridine synthase B [Listeria monocytogenes J2818]
gi|345533971|gb|AEO03412.1| tRNA pseudouridine synthase B [Listeria monocytogenes J0161]
gi|345536873|gb|AEO06313.1| tRNA pseudouridine synthase B [Listeria monocytogenes 10403S]
gi|404230452|emb|CBY51856.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC5850]
gi|441471001|emb|CCQ20756.1| tRNA pseudouridine synthase B [Listeria monocytogenes]
gi|441474128|emb|CCQ23882.1| tRNA pseudouridine synthase B [Listeria monocytogenes N53-1]
Length = 304
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 119/282 (42%), Gaps = 61/282 (21%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII L K +SH+ V +++IL +K GH+GTLDP+V G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 163 GKEYVCVARLHDKVP-----------------DVAKVARALEALTGAVFQRPPLISAVK- 204
GK YV L A++ AL LTG + Q PP+ SAVK
Sbjct: 63 GKVYVAEITLGKSTTTEDATGETVNTKELAEISAAELQAALTKLTGKITQIPPMFSAVKV 122
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL------VVFWISCEAGTYVRTM 242
R R IY L+ D D L I+C GTY+RT+
Sbjct: 123 NGKKLYEYARAGIEVERPSRQVDIY--SLIRLDGDTALNQSNPTFQLEIACGKGTYIRTL 180
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVT-----MHDVMDAQWLYDNYRDEAYLRR 297
V +G +LG HM +L R RSG + D + M D+ +LY
Sbjct: 181 AVMIGELLGYPAHMSKLERTRSGFFKKEDCLTLTEIDEMMQASDSSFLY----------- 229
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEND 339
PLE + S +LV+++ + G L EN+
Sbjct: 230 ---PLEKGIESMAKLVIEEEVYAKVLNGGLLPTSLFAEVENE 268
>gi|311068189|ref|YP_003973112.1| tRNA pseudouridine synthase B [Bacillus atrophaeus 1942]
gi|419823830|ref|ZP_14347364.1| tRNA pseudouridine synthase B [Bacillus atrophaeus C89]
gi|310868706|gb|ADP32181.1| tRNA pseudouridine synthase B [Bacillus atrophaeus 1942]
gi|388472069|gb|EIM08858.1| tRNA pseudouridine synthase B [Bacillus atrophaeus C89]
Length = 309
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 133/297 (44%), Gaps = 55/297 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V I+++LR +K GH+GTLDP+V+G L +C+ RAT++V+
Sbjct: 4 GVLLLHKPVGMTSHDCVMKIRKLLRTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEK 63
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV- 203
K Y A+ DK A+V R L++L G Q PP+ SAV
Sbjct: 64 SKTYDAEVTLGVSTTTEDQTGETVAAKAVDKSITEAEVTRVLDSLKGRQEQVPPMYSAVK 123
Query: 204 -------------------KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
KR + I I + ++++ + F ++C GTYVRT+ V
Sbjct: 124 INGKKLYEYARAGIEVERPKRSITIENIALTSAVKHEGETARFRFTVTCSKGTYVRTLAV 183
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ---WLYDNYRDEAYLRRVIMP 301
+G LG HM L R SG D T + ++AQ D ++ +P
Sbjct: 184 AIGEKLGFPAHMSHLIRTASGAFS-LDECFTFEE-LEAQAEAGTIDEHK---------VP 232
Query: 302 LEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
+E L + V+ DT + GA L IP + + + + + T G +A+
Sbjct: 233 IERALNHLPKWVISDTLAKKVENGALLDIPEQF---SQLTCEDRIAVFTESGNCLAI 286
>gi|186522847|ref|NP_196950.2| tRNA pseudouridine synthase B [Arabidopsis thaliana]
gi|110741670|dbj|BAE98781.1| tRNA synthase - like protein [Arabidopsis thaliana]
gi|332004654|gb|AED92037.1| tRNA pseudouridine synthase B [Arabidopsis thaliana]
Length = 540
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 34/202 (16%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ ++KP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT++V QG
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382
Query: 164 KEYVCVARLHDKV-------PDVAK----------VARALEALTGAVFQRPPLISAVK-- 204
K Y V RL + P + + + +AL + G ++Q PP+ SA+K
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442
Query: 205 ------RQLRIRTIYES----KLLEYDVDRHL-----VVFWISCEAGTYVRTMCVHLGLI 249
+ R T+ S + ++D++R L ++F + C GTY+R++C L
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502
Query: 250 LGVGGHMQELRRVRSGILGEND 271
LG H+ LRR G ND
Sbjct: 503 LGSCAHLTALRRDSIGEYSAND 524
>gi|68250152|ref|YP_249264.1| tRNA pseudouridine synthase B [Haemophilus influenzae 86-028NP]
gi|81335424|sp|Q4QK43.1|TRUB_HAEI8 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|68058351|gb|AAX88604.1| tRNA pseudouridine synthase B [Haemophilus influenzae 86-028NP]
Length = 306
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 48/292 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAEGQVVETREVHVETPQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYHAP--FLTLEVHCSKGTYIRTLVDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMIPINELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
L + AI +G + ++F N+ ++G +V L + E + LG+A
Sbjct: 246 PALHLDVEQSKAIGFGQR------VKFANEQQLGGQVRLFS--AENLFLGVA 289
>gi|423395891|ref|ZP_17373092.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-1]
gi|423406767|ref|ZP_17383916.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-3]
gi|401653633|gb|EJS71177.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-1]
gi|401660057|gb|EJS77540.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-3]
Length = 307
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 129/279 (46%), Gaps = 55/279 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEGALAELTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L+ + ++VV D I G L +ND+E+
Sbjct: 235 EALSKFPKMVVDDKQAEKIKNGMFL--------KNDLEI 265
>gi|7573471|emb|CAB87785.1| tRNA synthase-like protein [Arabidopsis thaliana]
Length = 540
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 34/202 (16%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
++ ++KP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT++V QG
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382
Query: 164 KEYVCVARLHDKV-------PDVAK----------VARALEALTGAVFQRPPLISAVK-- 204
K Y V RL + P + + + +AL + G ++Q PP+ SA+K
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442
Query: 205 ------RQLRIRTIYES----KLLEYDVDRHL-----VVFWISCEAGTYVRTMCVHLGLI 249
+ R T+ S + ++D++R L ++F + C GTY+R++C L
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502
Query: 250 LGVGGHMQELRRVRSGILGEND 271
LG H+ LRR G ND
Sbjct: 503 LGSCAHLTALRRDSIGEYSAND 524
>gi|16803368|ref|NP_464853.1| tRNA pseudouridine synthase B [Listeria monocytogenes EGD-e]
gi|386050304|ref|YP_005968295.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL R2-561]
gi|404283819|ref|YP_006684716.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2372]
gi|405758375|ref|YP_006687651.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2479]
gi|37089227|sp|Q8Y7F3.1|TRUB_LISMO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|16410744|emb|CAC99406.1| truB [Listeria monocytogenes EGD-e]
gi|346424150|gb|AEO25675.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL R2-561]
gi|404233321|emb|CBY54724.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2372]
gi|404236257|emb|CBY57659.1| tRNA pseudouridine synthase B [Listeria monocytogenes SLCC2479]
Length = 304
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 119/282 (42%), Gaps = 61/282 (21%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII L K +SH+ V +++IL +K GH+GTLDP+V G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVYKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 163 GKEYVCVARLHDKVP-----------------DVAKVARALEALTGAVFQRPPLISAVK- 204
GK YV L A++ AL LTG + Q PP+ SAVK
Sbjct: 63 GKVYVAEITLGKSTTTEDATGETVNTKELAEISAAELQAALTKLTGKITQIPPMFSAVKV 122
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL------VVFWISCEAGTYVRTM 242
R R IY L+ D D L I+C GTY+RT+
Sbjct: 123 NGKKLYEYARAGIEVERPSRQVDIY--SLIRLDGDTALNQSNPTFQLEIACGKGTYIRTL 180
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVT-----MHDVMDAQWLYDNYRDEAYLRR 297
V +G +LG HM +L R RSG + D + M D+ +LY
Sbjct: 181 AVMIGELLGYPAHMSKLERTRSGFFKKEDCLTLTEIDEMMQASDSSFLY----------- 229
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEND 339
PLE + S +LV+++ + G L EN+
Sbjct: 230 ---PLEKGIESMAKLVIEEEVYAKVLNGGLLPTSLFAEVENE 268
>gi|164688515|ref|ZP_02212543.1| hypothetical protein CLOBAR_02160 [Clostridium bartlettii DSM
16795]
gi|164602928|gb|EDQ96393.1| tRNA pseudouridine synthase B [Clostridium bartlettii DSM 16795]
Length = 304
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 35/214 (16%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
IIN+ KP +SH+VV+ ++R L ++K GH+GTLDP G L +C+ RAT++ +
Sbjct: 4 IINILKPTGMTSHDVVSCVRRTLNMKKVGHTGTLDPDAAGVLPICLGRATKVSELILNKD 63
Query: 164 KEYVC-----------------VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQ 206
K Y+C + R D + +K+ A ++ G + Q PP+ SA+K
Sbjct: 64 KSYICELTLGIETDTYDSSGTILYRNDDLNIEESKIREAFKSQEGEINQMPPVYSALKVN 123
Query: 207 -----------------LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
++ R + K+ ++ + + F++ C GTYVR++C +G
Sbjct: 124 GQKMCDLARKGKADSIDIKPRKVNIKKIEILNISNNKITFYVKCSKGTYVRSICHDIGEY 183
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
L GGHM L R SG DN +T+ ++ D +
Sbjct: 184 LNCGGHMSFLLRTSSGKFNL-DNAITLEELEDLK 216
>gi|196044668|ref|ZP_03111903.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB108]
gi|229186047|ref|ZP_04313217.1| tRNA pseudouridine synthase B [Bacillus cereus BGSC 6E1]
gi|196024703|gb|EDX63375.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB108]
gi|228597466|gb|EEK55116.1| tRNA pseudouridine synthase B [Bacillus cereus BGSC 6E1]
Length = 307
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|222097254|ref|YP_002531311.1| tRNA pseudouridine synthase b [Bacillus cereus Q1]
gi|221241312|gb|ACM14022.1| tRNA pseudouridine synthase B [Bacillus cereus Q1]
Length = 307
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------VLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|49186660|ref|YP_029912.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Sterne]
gi|65321137|ref|ZP_00394096.1| COG0130: Pseudouridine synthase [Bacillus anthracis str. A2012]
gi|165872605|ref|ZP_02217236.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0488]
gi|167635824|ref|ZP_02394133.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0442]
gi|167639765|ref|ZP_02398034.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0193]
gi|177652143|ref|ZP_02934689.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0174]
gi|190568450|ref|ZP_03021357.1| tRNA pseudouridine synthase B [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813282|ref|YP_002813291.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CDC 684]
gi|229604348|ref|YP_002868048.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0248]
gi|254722004|ref|ZP_05183793.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A1055]
gi|254735848|ref|ZP_05193554.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Western
North America USA6153]
gi|254739626|ref|ZP_05197320.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Kruger B]
gi|254756001|ref|ZP_05208032.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Vollum]
gi|254759338|ref|ZP_05211363.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Australia
94]
gi|270000605|ref|YP_003329044.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Ames]
gi|291612220|ref|YP_003541034.1| tRNA pseudouridine synthase B [Bacillus anthracis str. 'Ames
Ancestor']
gi|386737632|ref|YP_006210813.1| tRNA pseudouridine synthase B [Bacillus anthracis str. H9401]
gi|421507350|ref|ZP_15954270.1| tRNA pseudouridine synthase B [Bacillus anthracis str. UR-1]
gi|421639564|ref|ZP_16080155.1| tRNA pseudouridine synthase B [Bacillus anthracis str. BF1]
gi|37088013|sp|P59873.1|TRUB_BACAN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49180587|gb|AAT55963.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Sterne]
gi|164711637|gb|EDR17183.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0488]
gi|167512166|gb|EDR87543.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0193]
gi|167528781|gb|EDR91539.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0442]
gi|172082512|gb|EDT67577.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0174]
gi|190560454|gb|EDV14432.1| tRNA pseudouridine synthase B [Bacillus anthracis str.
Tsiankovskii-I]
gi|224552839|gb|ACN55052.1| tRNA pseudouridine synthase B [Bacillus anthracis str. 'Ames
Ancestor']
gi|227005085|gb|ACP14828.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CDC 684]
gi|229268756|gb|ACQ50393.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0248]
gi|269850275|gb|ACZ49993.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Ames]
gi|384387484|gb|AFH85145.1| tRNA pseudouridine synthase B [Bacillus anthracis str. H9401]
gi|401822484|gb|EJT21634.1| tRNA pseudouridine synthase B [Bacillus anthracis str. UR-1]
gi|403393229|gb|EJY90474.1| tRNA pseudouridine synthase B [Bacillus anthracis str. BF1]
Length = 307
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 39/202 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSG 265
V +G LG HM L R SG
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASG 204
>gi|170706782|ref|ZP_02897240.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0389]
gi|170128200|gb|EDS97069.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0389]
Length = 307
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 39/202 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSG 265
V +G LG HM L R SG
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASG 204
>gi|229174476|ref|ZP_04302008.1| tRNA pseudouridine synthase B [Bacillus cereus MM3]
gi|423401348|ref|ZP_17378521.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-2]
gi|423477948|ref|ZP_17454663.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6X1-1]
gi|228609036|gb|EEK66326.1| tRNA pseudouridine synthase B [Bacillus cereus MM3]
gi|401654338|gb|EJS71881.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-2]
gi|402428110|gb|EJV60207.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6X1-1]
Length = 307
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEGALAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|342904282|ref|ZP_08726083.1| tRNA pseudouridine synthase B [Haemophilus haemolyticus M21621]
gi|341953522|gb|EGT80026.1| tRNA pseudouridine synthase B [Haemophilus haemolyticus M21621]
Length = 306
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 48/292 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAEGQVVETREVHVETQQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY ++ + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYHAP--YLILEVHCSKGTYIRTLIDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMMPIDELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
L + AI +G + ++F ND ++ +V L + E + LG+A
Sbjct: 246 PALHLDAEQSKAIGFGRR------VKFANDEQLSGQVRLFS--AENLFLGVA 289
>gi|170687863|ref|ZP_02879077.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0465]
gi|254683483|ref|ZP_05147343.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CNEVA-9066]
gi|170668179|gb|EDT18928.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0465]
Length = 307
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGVTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|377821072|ref|YP_004977443.1| tRNA pseudouridine synthase B [Burkholderia sp. YI23]
gi|357935907|gb|AET89466.1| tRNA pseudouridine synthase B [Burkholderia sp. YI23]
Length = 307
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 122/261 (46%), Gaps = 44/261 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS++ + +KRI +K GH+GTLDP TG L +C AT+ + A
Sbjct: 14 GVLLLDKPLGLSSNDALIKVKRIYLAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDA 73
Query: 163 GKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y RL D D A V+ A+ G + Q PP+ SA+K
Sbjct: 74 DKTYEATMRLGIRTTTGDAEGEAIDTRDVTCDEAAVSDAMTKFLGDIVQVPPMYSALKRD 133
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+ +L+ + LV F ++C GTYVRT+ +G +
Sbjct: 134 GKPLYEYARAGQTVEREGRPVTIHALQLIACALP--LVTFRVTCSKGTYVRTLAEDIGEV 191
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR G L D+ VT+ ++ L + RDE + P++ LL+++
Sbjct: 192 LGCGAHLTALRRTGVGAL-TVDHAVTLDEL---AILSEAERDER-----LQPVDALLSTF 242
Query: 310 KRLVVKDTTVNAICYGAKLMI 330
+ + + +G +L +
Sbjct: 243 PEIRLDEEAARRFLHGQRLRL 263
>gi|222153119|ref|YP_002562296.1| tRNA pseudouridine synthase B [Streptococcus uberis 0140J]
gi|222113932|emb|CAR42161.1| tRNA pseudouridine synthase B [Streptococcus uberis 0140J]
Length = 300
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 126/267 (47%), Gaps = 47/267 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V ++R+L +K GH GTLDP V+G L + + +ATR+++ A
Sbjct: 4 GIINLYKEAGMTSHDAVFKLRRLLHEKKIGHGGTLDPDVSGVLPIAVGKATRVIEYMTNA 63
Query: 163 GKEYVCVARL------HDKVPDV------------AKVARALEALTGAVFQRPPLISAVK 204
GK Y L D D+ A+V A+++ G + Q PP+ SAVK
Sbjct: 64 GKVYEGTVTLGYSTTTEDSSGDIVLRTPVNRPLSEAEVDFAMKSFEGDIEQIPPMYSAVK 123
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
R++RI + L + + F + C GTYVRT+ V
Sbjct: 124 VNGRKLYEYARAGQTVERPVRKVRIEQFIRTSDLTFKDNLCTFDFKVICSKGTYVRTLAV 183
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
+LG LG HM LRR S L D T++++ + + +D ++P+E
Sbjct: 184 NLGEKLGFASHMSYLRRTASAGL-TIDKSYTLNEI--ETLISQDKQD------FLLPIEA 234
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIP 331
+ +LV+ D+ + I +G ++ +P
Sbjct: 235 GVEGLPKLVITDSEKSDIVHGRRVNLP 261
>gi|118498034|ref|YP_899084.1| tRNA pseudouridine synthase B [Francisella novicida U112]
gi|194323259|ref|ZP_03057043.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTE]
gi|208779556|ref|ZP_03246901.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTG]
gi|189036481|sp|A0Q7W5.1|TRUB_FRATN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|118423940|gb|ABK90330.1| tRNA pseudouridine synthase B [Francisella novicida U112]
gi|194322623|gb|EDX20103.1| tRNA pseudouridine synthase B, putative [Francisella tularensis
subsp. novicida FTE]
gi|208744517|gb|EDZ90816.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTG]
Length = 302
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 37/198 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ ++K + SS++V+ +K + +K GH+GTLDP TG L +C RAT++ + A
Sbjct: 10 GVVVINKAKDVSSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDA 69
Query: 163 GKEYVCVARLH-------------DKVPDVAKVA-----RALEALTGAVFQRPPLISAVK 204
KEY+ RL K P++ +++ L G V Q PP+ SA+K
Sbjct: 70 DKEYIATIRLGIETDSGDAEGEIIAKSPNIPELSAEYLETVLAKFRGDVVQIPPMYSALK 129
Query: 205 -------------RQLRIRT----IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
+ + +++ IYE +LLE+D+D + + C GTY+R++ + +G
Sbjct: 130 YNGQPLYKLAREGKTVEVKSRNIKIYELELLEFDIDS--LKIRVKCSKGTYIRSLAIDIG 187
Query: 248 LILGVGGHMQELRRVRSG 265
LG GGH+ L+R +SG
Sbjct: 188 KTLGCGGHLIALQRTQSG 205
>gi|332799227|ref|YP_004460726.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|438002355|ref|YP_007272098.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|332696962|gb|AEE91419.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|432179149|emb|CCP26122.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
Length = 300
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 45/247 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+IN+ KPA +SH+V+ ++R+L+++K GHSGTLDP TG L V I +AT+ ++
Sbjct: 3 GVINVLKPAGMTSHDVINHLRRLLKIKKIGHSGTLDPAATGVLPVFIGKATKAIEFFMED 62
Query: 163 GKEYVCVARL------HDKVPDVAKVARA------------LEALTGAVFQRPPLISA-- 202
KEY+ RL D ++ K+ L+ TG + Q PP+ SA
Sbjct: 63 DKEYISEMRLGVTTDTGDFQGNIIKIYNGPFNIGKIKFEEVLKEFTGEIMQIPPMYSAVH 122
Query: 203 ---------------VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
V+R+ R IY LLE+D ++ ++C GTY+RT+C +G
Sbjct: 123 YKGKKLYELARQGITVERRPRKIYIYSIDLLEFDEKSAII--NVACSKGTYIRTLCEDIG 180
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
LG G + +L R RSG D++ T+ ++ Q L +N +V++P++ L
Sbjct: 181 NKLGCGACLSDLIRTRSGSFKIEDSL-TLEEI--QQNLINN-----TFEKVLIPIDQCLQ 232
Query: 308 SYKRLVV 314
+ +++
Sbjct: 233 NMPMVIL 239
>gi|229157386|ref|ZP_04285464.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 4342]
gi|228626113|gb|EEK82862.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 4342]
Length = 307
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 39/202 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+I L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVILLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSG 265
V +G LG HM L R SG
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASG 204
>gi|319776234|ref|YP_004138722.1| tRNA pseudouridine synthase [Haemophilus influenzae F3047]
gi|329123372|ref|ZP_08251936.1| tRNA pseudouridine synthase B [Haemophilus aegyptius ATCC 11116]
gi|317450825|emb|CBY87048.1| tRNA pseudouridine synthase [Haemophilus influenzae F3047]
gi|327470954|gb|EGF16409.1| tRNA pseudouridine synthase B [Haemophilus aegyptius ATCC 11116]
Length = 306
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 135/293 (46%), Gaps = 50/293 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ +V K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQVNKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVPD----------------VAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAEGQVVETREVNVKTQQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYHAP--YLTLEVHCSKGTYIRTLVDDLGKV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVT-MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LG G H+ LRR D +T M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA-----DYPITEMMPIDELQLLAESF-PLSELDRLLLPTDTAVSK 244
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
L + AI +G + ++F N+ ++ +V L + E + LG+A
Sbjct: 245 LPALHLDAEQSKAIGFGQR------VKFANEQQLSGQVRLFS--AENLFLGVA 289
>gi|350566724|ref|ZP_08935369.1| tRNA pseudouridine synthase B [Peptoniphilus indolicus ATCC 29427]
gi|348661911|gb|EGY78586.1| tRNA pseudouridine synthase B [Peptoniphilus indolicus ATCC 29427]
Length = 285
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 100/196 (51%), Gaps = 35/196 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKP +SH+VV ++R L ++K GH+GTLDP TG L + I +AT+L +
Sbjct: 3 GVLVIDKPKGVTSHDVVYMVRRKLGIKKVGHTGTLDPIATGVLPILIGKATKLSDRLTAS 62
Query: 163 GKEYVC----------------VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK-- 204
KEY+ V +P + + LE TG + Q PP+ SA+K
Sbjct: 63 NKEYIAEFKFGIQTDSLDITGNVTHASAMIPSEDSLRKELENFTGDILQEPPIYSAIKIK 122
Query: 205 -RQL--------------RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
++L R TIY KLL+ +R ++ +I+C +GTYVR++ +GL
Sbjct: 123 GKKLYEYARAGEEIEIPKRQCTIYSMKLLDSSENRFII--YINCSSGTYVRSLIRDIGLK 180
Query: 250 LGVGGHMQELRRVRSG 265
L M ELRRV +G
Sbjct: 181 LKSFATMTELRRVSTG 196
>gi|334880366|emb|CCB81092.1| tRNA pseudouridine synthase B [Lactobacillus pentosus MP-10]
gi|339639030|emb|CCC18241.1| tRNA pseudouridine synthase B [Lactobacillus pentosus IG1]
Length = 307
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 116/254 (45%), Gaps = 48/254 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +S + VA I+R+ + K GHSGTLDP V G L +CI AT++V+ +
Sbjct: 4 GILPLYKPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVAS 63
Query: 163 GKEYVC-----------------VARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVK 204
GKEY +AR P A + AL +TG + Q PP+ SAVK
Sbjct: 64 GKEYQGSITLGFATTTEDLDGDEIARQAVDAPFSDAAIDDALAQMTGDITQIPPMFSAVK 123
Query: 205 --------------------RQLRIRTIYESKLLEYDVD--RHLVVFWISCEAGTYVRTM 242
R + I + + + YD + + F ++C GTYVRT+
Sbjct: 124 VNGRRLYDYARHGETVERPQRHVTITSFKQRQPATYDSEAKTQTIYFTVACSKGTYVRTL 183
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
V +G LGV M +L R++SG D VT ++ + D ++ P+
Sbjct: 184 AVDVGRALGVPAVMSDLTRLKSGGF-TLDETVTFEEIA-------AHADAGTAGELLAPI 235
Query: 303 EVLLTSYKRLVVKD 316
+ L+ Y R+ + D
Sbjct: 236 DKALSQYPRVTLTD 249
>gi|49478389|ref|YP_037871.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118479030|ref|YP_896181.1| tRNA pseudouridine synthase B [Bacillus thuringiensis str. Al
Hakam]
gi|225865789|ref|YP_002751167.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB102]
gi|301055300|ref|YP_003793511.1| tRNA pseudouridine synthase B [Bacillus cereus biovar anthracis
str. CI]
gi|376267704|ref|YP_005120416.1| tRNA pseudouridine synthase B [Bacillus cereus F837/76]
gi|54036479|sp|Q6HF05.1|TRUB_BACHK RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|189030157|sp|A0RHI1.1|TRUB_BACAH RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49329945|gb|AAT60591.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418255|gb|ABK86674.1| tRNA pseudouridine synthase B [Bacillus thuringiensis str. Al
Hakam]
gi|225786358|gb|ACO26575.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB102]
gi|300377469|gb|ADK06373.1| tRNA pseudouridine synthase B [Bacillus cereus biovar anthracis
str. CI]
gi|364513504|gb|AEW56903.1| tRNA pseudouridine synthase B [Bacillus cereus F837/76]
Length = 307
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGETISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|392331359|ref|ZP_10275974.1| tRNA pseudouridine synthase B [Streptococcus canis FSL Z3-227]
gi|391419038|gb|EIQ81850.1| tRNA pseudouridine synthase B [Streptococcus canis FSL Z3-227]
Length = 294
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 52/270 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K +SH+ V ++++L+ +K GH GTLDP V G L + + +ATR+++ A
Sbjct: 4 GIINLKKETGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMTEA 63
Query: 163 GKEY-----------------VCVARLHDKVPDVAK---VARALEALTGAVFQRPPLISA 202
GK Y VAR H +PD V +A+ G + Q PP+ SA
Sbjct: 64 GKIYEGQITLGYSTTTEDASGEIVARSH--LPDTLSEEMVDQAMTNFVGQISQIPPMYSA 121
Query: 203 V--------------------KRQLRIRTIYESKLLEYDVDRHL-VVFWISCEAGTYVRT 241
V KR++ I + L + D F ++C GTYVRT
Sbjct: 122 VKVNGRKLYDYARAGESVERPKREVTISQFERTSPLTFTEDGLCRFSFKVACSKGTYVRT 181
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+ V LG LG+ HM L+R S L + T+ ++ A+ L N D +L +P
Sbjct: 182 LAVDLGRALGIESHMSFLQRTASAGL-TLETAYTLGEI--AELLSQN--DMGFL----LP 232
Query: 302 LEVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
+E + +LV+ D+ + I +G +L +P
Sbjct: 233 IEYGVNDLPKLVINDSEMTEISFGRRLTLP 262
>gi|332522374|ref|ZP_08398626.1| tRNA pseudouridine synthase B [Streptococcus porcinus str.
Jelinkova 176]
gi|332313638|gb|EGJ26623.1| tRNA pseudouridine synthase B [Streptococcus porcinus str.
Jelinkova 176]
Length = 292
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 123/269 (45%), Gaps = 51/269 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ K A +SH+VV ++RILR +K GH GTLDP V G L + + +ATR+++ A
Sbjct: 3 GIINVKKEAGMTSHDVVFRLRRILREKKIGHGGTLDPDVVGVLPIAVGKATRVLEFMTEA 62
Query: 163 GKEY---VCVARLHD------KVPDVAKVARALE---------ALTGAVFQRPPLISAVK 204
GK Y V + D + + V R LE + G + Q PP+ SAVK
Sbjct: 63 GKVYEGRVTLGFSTDTEDASGSLVEQTPVTRPLEEEIVDEVMASFQGEITQIPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + L Y+ + F ++C GTYVRT+ V
Sbjct: 123 VKGRKLYEYARAGEEVERPQRQVTISEFKRTSPLTYENNLCHFDFKVACSKGTYVRTLAV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV--MDAQWLYDNYRDEAYLRRVIMPL 302
LG LG HM L R S L + D T+ D+ M A+ Y ++P+
Sbjct: 183 DLGQKLGYASHMSYLERTASAGL-QLDKAFTLLDIEKMVAETNYS----------FLLPI 231
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
E + +L++ + + +G ++ +P
Sbjct: 232 EYGVAELAKLMISEQESKELSFGRRIQLP 260
>gi|417840078|ref|ZP_12486232.1| tRNA pseudouridine synthase B [Haemophilus haemolyticus M19107]
gi|341950155|gb|EGT76746.1| tRNA pseudouridine synthase B [Haemophilus haemolyticus M19107]
Length = 306
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 48/292 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAEGQIVETREVHIETQQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYHAP--FLTLEVHCSKGTYIRTLVDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMMPIDELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
L + AI +G + ++F N+ ++ +V L + E + LG+A
Sbjct: 246 PALRLDAEQSKAISFGQR------VKFANEQQLSGQVRLFS--AENLFLGVA 289
>gi|225016944|ref|ZP_03706136.1| hypothetical protein CLOSTMETH_00859 [Clostridium methylpentosum
DSM 5476]
gi|224950338|gb|EEG31547.1| hypothetical protein CLOSTMETH_00859 [Clostridium methylpentosum
DSM 5476]
Length = 295
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 43/260 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ ++KP +S +VVA ++ I R ++ GH+GTLDP TG L V + RAT+ +
Sbjct: 3 GILCMNKPEGFTSFDVVAKLRGITRTKRIGHAGTLDPMATGVLPVFLGRATKAISLLPDH 62
Query: 163 GKEYVC-----------------VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK- 204
K Y ++R H + +A ALE G + Q PP+ SA+K
Sbjct: 63 TKRYTAGFQLGLTSDTLDSTGTILSRSHSTLTQQELLA-ALEQYRGTISQIPPMYSALKV 121
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R I++ +LL +D V + C +GTY+RT+C +G
Sbjct: 122 EGKRLYELARQGKTVERKPRKVEIFQLELLSFDTKLQTGVLDVGCSSGTYIRTLCDDIGR 181
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LGVG M L+R + D+ T +V +D+ L ++P+E + S
Sbjct: 182 DLGVGAVMTSLQRTEAAGFSLADSR-TFDEV-------QQLKDDGRLEEALLPVERVFES 233
Query: 309 YKRLVVKDTTVNAICYGAKL 328
Y RL + C G KL
Sbjct: 234 YPRLCFGEAQARMFCNGVKL 253
>gi|393778286|ref|ZP_10366565.1| tRNA pseudouridine synthase B [Ralstonia sp. PBA]
gi|392714752|gb|EIZ02347.1| tRNA pseudouridine synthase B [Ralstonia sp. PBA]
Length = 325
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 101/211 (47%), Gaps = 36/211 (17%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G++ LDKP SS++ + KR+LR K GH+GTLDP TG L +C AT+ +
Sbjct: 30 HGVLLLDKPLGLSSNDALVRAKRLLRANKAGHTGTLDPLATGLLPLCFGEATKFSQDLLD 89
Query: 162 AGKEYVCVARLHDK-------------VP---DVAKVARALEALTGAVFQRPPLISAVK- 204
A KEYV RL + +P D A V A+ A G + Q PP+ SA+K
Sbjct: 90 ADKEYVATLRLGQETTTGDAEGEVVKALPVTCDAAAVDMAVRAFLGPIEQVPPMYSALKK 149
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R R TI+E ++L V + V + C GTY+RT+ +G
Sbjct: 150 DGKPLYAYARAGEVVERVARAVTIHEIEILSCTVPQ--VTLRVLCSKGTYIRTLAEDIGR 207
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
LG G H+ LRR R G L D +T+ +
Sbjct: 208 HLGCGAHLTALRRTRVGAL-SLDGALTLEQL 237
>gi|356511706|ref|XP_003524564.1| PREDICTED: uncharacterized protein LOC100793939 [Glycine max]
Length = 485
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 40/214 (18%)
Query: 95 PLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATR 154
P+ D ++ ++KP +S V ++R+++V+K GH+GTLDP TG LIVC+ +AT+
Sbjct: 259 PVWDTPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 318
Query: 155 LVKSQQGAGKEYVCVARLHDKV-------PDVAK----------VARALEALTGAVFQRP 197
LV QG K Y V RL + P + + + R + +G ++Q P
Sbjct: 319 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFSGEIWQVP 378
Query: 198 PLISAVKR---------------QLRIRTIYESKLLEYDVDRHL-----VVFWISCEAGT 237
P+ SA+K +L R I + ++D++R L ++F ++C GT
Sbjct: 379 PMFSAIKVGGEKMYEKARRGESIELSPRRI---SIFQFDIERSLDDRQNLIFRVTCSKGT 435
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGEND 271
Y+R++C G LG H+ LRR G +D
Sbjct: 436 YIRSLCADFGKALGSCAHLTALRRDSIGQYSADD 469
>gi|416353517|ref|ZP_11681537.1| tRNA pseudouridine synthase B [Clostridium botulinum C str.
Stockholm]
gi|338195551|gb|EGO87817.1| tRNA pseudouridine synthase B [Clostridium botulinum C str.
Stockholm]
Length = 289
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 138/295 (46%), Gaps = 58/295 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+N+ KP +S +VV IK++ ++K GH+GTLDP TG L +CI + T++V
Sbjct: 3 GILNIYKPIGITSFDVVRQIKKVTGIKKIGHTGTLDPLATGVLPICIGKGTKIVDYLMKD 62
Query: 163 GKEYVCVARL------HDK------VPDVA----KVARALEALTGAVFQRPPLISAVK-- 204
K Y +L +D+ V DV ++ + + G + Q PP+ SA+K
Sbjct: 63 FKVYKAELKLGVITDTYDREGKELSVKDVNVSKKEIIDKINSFKGNILQVPPMYSALKVN 122
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R R TIY+ ++L D+ + F + C GTY+R++C +G
Sbjct: 123 GKRLYELAREGKEVERVARPVTIYDIEIL--DISIPYIKFMVKCSKGTYIRSLCYDIGDN 180
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG GG M L RV+SG + DN +T+ ++ DN D I+P++ L+ Y
Sbjct: 181 LGCGGAMWNLERVQSGSFNK-DNSITLENLTK-----DNVED------YIIPIDDALSQY 228
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLL----RFENDIEVGEEVVLMTTKGEAVALGI 360
+ +V KL+I G+ R N IE+ + + + + LG+
Sbjct: 229 DKAIVNSKA-------EKLLINGVRIADKRLLNTIELNKLYRIYNEDNKFLGLGL 276
>gi|402556069|ref|YP_006597340.1| tRNA pseudouridine synthase B [Bacillus cereus FRI-35]
gi|401797279|gb|AFQ11138.1| tRNA pseudouridine synthase B [Bacillus cereus FRI-35]
Length = 307
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------VLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|300025000|ref|YP_003757611.1| tRNA pseudouridine synthase B [Hyphomicrobium denitrificans ATCC
51888]
gi|299526821|gb|ADJ25290.1| tRNA pseudouridine synthase B [Hyphomicrobium denitrificans ATCC
51888]
Length = 306
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 121/290 (41%), Gaps = 42/290 (14%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G + LDKP N +S + V ++R+ +K GHSGTLDP TG L + + AT+ V
Sbjct: 11 HGWLVLDKPQNMTSTQAVGIVRRVFNAQKAGHSGTLDPLATGILPIALGEATKTVSFAVD 70
Query: 162 AGKEY----------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205
K Y +A D+ PD A + L G + Q PP SA+K
Sbjct: 71 GEKAYRFTVRWGAETETDDTEGAIANTSDQRPDRASIEALLPQFHGEIMQVPPAYSAIKV 130
Query: 206 Q---------------LRIRTIYESKLLEYDV-DRHLVVFWISCEAGTYVRTMCVHLGLI 249
L R ++ L D+ D VF C GTYVR + +G +
Sbjct: 131 DGARAYDLARDGETVVLNARPVFIDSLQLVDMPDAATSVFEARCGKGTYVRALARDMGRL 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG GH+ LRR + G E V M D+ A + D L R + P+E L
Sbjct: 191 LGCYGHVIALRRTQVGPFDEA-IAVAMDDLKAAS----DANDPEQLLRFLQPVEAALADL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
L+V + ++ G ++I G D + T+KG +ALG
Sbjct: 246 PELLVSQSDAASLARGQTVLIRG-----RDAPILSGPAYATSKGRLIALG 290
>gi|229197920|ref|ZP_04324636.1| tRNA pseudouridine synthase B [Bacillus cereus m1293]
gi|423574584|ref|ZP_17550703.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-D12]
gi|423604563|ref|ZP_17580456.1| tRNA pseudouridine synthase B [Bacillus cereus VD102]
gi|228585638|gb|EEK43740.1| tRNA pseudouridine synthase B [Bacillus cereus m1293]
gi|401212109|gb|EJR18855.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-D12]
gi|401245183|gb|EJR51541.1| tRNA pseudouridine synthase B [Bacillus cereus VD102]
Length = 307
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------VLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|387138870|ref|YP_005694849.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|389850622|ref|YP_006352857.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
258]
gi|349735348|gb|AEQ06826.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|388247928|gb|AFK16919.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
258]
Length = 303
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 46/226 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VV ++RI ++ GH+GTLDP TG L+V I+R T+ + +
Sbjct: 9 GLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68
Query: 163 GKEYVCVARL------HDKVPDV--------------AKVARALEALTGAVFQRPPLISA 202
K Y RL DK +V A +A + TG + QRP +SA
Sbjct: 69 TKSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSA 128
Query: 203 VK------RQL-----------RIRTIYESKLLEYDVDRHLVVFWI------SCEAGTYV 239
+K Q+ R TIY +L D+ R L + +I +C +GTY+
Sbjct: 129 IKINGKRAHQMVREGQEVEIPPRPVTIYNFDVL--DISRSLPLEFIDIEVEVTCSSGTYI 186
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
R++ LG L VGGH+ LRR+ G +D +T+ D+ A L
Sbjct: 187 RSLARDLGSALNVGGHLTALRRLSVGPFSLSDT-ITLDDLTAAPKL 231
>gi|310778247|ref|YP_003966580.1| tRNA pseudouridine synthase B [Ilyobacter polytropus DSM 2926]
gi|309747570|gb|ADO82232.1| tRNA pseudouridine synthase B [Ilyobacter polytropus DSM 2926]
Length = 286
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 35/196 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+DK + +S +VV +KRIL+++K GH+GTLDP TG L++C RATRL + +G
Sbjct: 3 GIINIDKSSGMTSFDVVRRLKRILKMKKIGHTGTLDPMATGILVICTGRATRLAQDIEGQ 62
Query: 163 GKEYVC----------------VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ + DK ++ +ALE G + Q PP+ SA+K
Sbjct: 63 RKTYIAGFELGYKTTTYDTEGEITHRTDKGAKREELEKALENFRGEIDQIPPMYSALKVN 122
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI ++L++D + F + GTY+R++ +G +
Sbjct: 123 GKRLYELAREGKEVERKSRRVTIENLEILDFDGRKG--TFTCTVSKGTYIRSLIYDIGEL 180
Query: 250 LGVGGHMQELRRVRSG 265
LG G M LRR + G
Sbjct: 181 LGTYGVMTSLRRTQVG 196
>gi|152978795|ref|YP_001344424.1| tRNA pseudouridine synthase B [Actinobacillus succinogenes 130Z]
gi|254764877|sp|A6VNE2.1|TRUB_ACTSZ RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|150840518|gb|ABR74489.1| tRNA pseudouridine synthase B [Actinobacillus succinogenes 130Z]
Length = 311
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 48/295 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ +
Sbjct: 13 HGVFLLDKPPGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLD 72
Query: 162 AGKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISA--- 202
A K Y+ A+L ++ ++ ++ AL G + Q P + SA
Sbjct: 73 ADKRYLVTAKLGERTDTSDAEGQLVQTRAVNVNLTEILTALPHFRGDLMQVPTMFSALKH 132
Query: 203 --------------VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
V+RQ R TI+E K ++Y+ + + C GTY+RT+ LG
Sbjct: 133 QGKPLYEYARAGVTVQRQARPITIFELKFIDYNAP--FLTLEVHCSKGTYIRTLIDDLGE 190
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LG G H+ LRR + M+T + Q L ++ D + L +++P + ++
Sbjct: 191 HLGCGAHVVMLRRTAVSDY-PAEKMLTWEAL---QQLAES-ADLSRLDALLLPTDSAVSK 245
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEM 363
LV+ + A+ +G + +RF N+ + +V L + E + LG+AE+
Sbjct: 246 LPPLVLNEQQTKAVGFGQR------IRFNNEENIYGQVRLFS--AENLFLGVAEI 292
>gi|218904937|ref|YP_002452771.1| tRNA pseudouridine synthase B [Bacillus cereus AH820]
gi|228916447|ref|ZP_04080013.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928858|ref|ZP_04091890.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935124|ref|ZP_04097951.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947529|ref|ZP_04109819.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229123323|ref|ZP_04252527.1| tRNA pseudouridine synthase B [Bacillus cereus 95/8201]
gi|423550441|ref|ZP_17526768.1| tRNA pseudouridine synthase B [Bacillus cereus ISP3191]
gi|218534932|gb|ACK87330.1| tRNA pseudouridine synthase B [Bacillus cereus AH820]
gi|228660099|gb|EEL15735.1| tRNA pseudouridine synthase B [Bacillus cereus 95/8201]
gi|228812049|gb|EEM58380.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824489|gb|EEM70294.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830665|gb|EEM76270.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843026|gb|EEM88108.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|401190057|gb|EJQ97107.1| tRNA pseudouridine synthase B [Bacillus cereus ISP3191]
Length = 307
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL LTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEALATLTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|386740606|ref|YP_006213786.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
31]
gi|384477300|gb|AFH91096.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
31]
Length = 303
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 115/237 (48%), Gaps = 47/237 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VV ++RI ++ GH+GTLDP TG L+V I+R T+ + +
Sbjct: 9 GLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68
Query: 163 GKEYVCVARL------HDKVPDV--------------AKVARALEALTGAVFQRPPLISA 202
K Y RL DK +V A +A + TG + QRP +SA
Sbjct: 69 TKSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSA 128
Query: 203 VK------RQL-----------RIRTIYESKLLEYDVDRHLVVFWI------SCEAGTYV 239
+K Q+ R TIY +L D+ R L + +I +C +GTY+
Sbjct: 129 IKINGKRAHQMVREGQEVEIPPRPVTIYNFDVL--DISRSLPLEFIDIEVEVTCSSGTYI 186
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLR 296
R++ LG L VGGH+ LRR+ G +D +T+ D+ A L + DE+ R
Sbjct: 187 RSLARDLGSALNVGGHLTALRRLSVGPFSLSDT-ITLDDLTAAPKLSLSL-DESLTR 241
>gi|365862852|ref|ZP_09402583.1| tRNA pseudouridine synthase B [Streptomyces sp. W007]
gi|364007703|gb|EHM28712.1| tRNA pseudouridine synthase B [Streptomyces sp. W007]
Length = 299
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 124/271 (45%), Gaps = 57/271 (21%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKP+ +SH+VVA ++ I R + GH+GTLDP TG L++ + RAT+L+
Sbjct: 10 GLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQRATKLLGHLALT 69
Query: 163 GKEYVCVARL-HDKVPDVAK----------------VARALEALTGAVFQRPPLISAVK- 204
KEY+ RL D V D A+ + + ALTG + Q P +SA+K
Sbjct: 70 EKEYLGTIRLGQDTVTDDAEGEITSSTDASGVTREGIDAGVAALTGRIMQVPSKVSAIKI 129
Query: 205 --------------RQLRIRTIYESKLLEYDVDRHL---------VVFWISCEAGTYVRT 241
++ R + S YDV + +V + C +GTY+R
Sbjct: 130 DGKRSYARVRGGEEFEIPARPVTVSSFRVYDVREAVAEDGTPVLDLVVSVVCSSGTYIRA 189
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP 301
+ LG LGVGGH+ LRR R G G +DA D ++ E +MP
Sbjct: 190 IARDLGAGLGVGGHLTALRRTRVGPYG-----------LDAARTLDQHQQEL----TVMP 234
Query: 302 L-EVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
+ E +++ R V + + G +L +P
Sbjct: 235 VAEAAASAFPRWDVDEKRAKLLLNGVRLDMP 265
>gi|300858692|ref|YP_003783675.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
FRC41]
gi|375288875|ref|YP_005123416.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
3/99-5]
gi|383314454|ref|YP_005375309.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
P54B96]
gi|384504872|ref|YP_005681542.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1002]
gi|384506968|ref|YP_005683637.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
C231]
gi|384509055|ref|YP_005685723.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
I19]
gi|385807754|ref|YP_005844151.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
267]
gi|387136796|ref|YP_005692776.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
42/02-A]
gi|300686146|gb|ADK29068.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
FRC41]
gi|302206402|gb|ADL10744.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
C231]
gi|302330958|gb|ADL21152.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1002]
gi|308276645|gb|ADO26544.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
I19]
gi|348607241|gb|AEP70514.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
42/02-A]
gi|371576164|gb|AEX39767.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
3/99-5]
gi|380869955|gb|AFF22429.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
P54B96]
gi|383805147|gb|AFH52226.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
267]
Length = 303
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 115/237 (48%), Gaps = 47/237 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VV ++RI ++ GH+GTLDP TG L+V I+R T+ + +
Sbjct: 9 GLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68
Query: 163 GKEYVCVARL------HDKVPDV--------------AKVARALEALTGAVFQRPPLISA 202
K Y RL DK +V A +A + TG + QRP +SA
Sbjct: 69 TKSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSA 128
Query: 203 VK------RQL-----------RIRTIYESKLLEYDVDRHLVVFWI------SCEAGTYV 239
+K Q+ R TIY +L D+ R L + +I +C +GTY+
Sbjct: 129 IKINGKRAHQMVREGQEVEIPPRPVTIYNFDVL--DISRSLPLEFIDIEVEVTCSSGTYI 186
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLR 296
R++ LG L VGGH+ LRR+ G +D +T+ D+ A L + DE+ R
Sbjct: 187 RSLARDLGSALNVGGHLTALRRLSVGPFSLSDT-ITLDDLTAAPKLSLSL-DESLTR 241
>gi|253682681|ref|ZP_04863478.1| tRNA pseudouridine synthase B [Clostridium botulinum D str. 1873]
gi|253562393|gb|EES91845.1| tRNA pseudouridine synthase B [Clostridium botulinum D str. 1873]
Length = 289
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 58/295 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+N+ KP +S +VV IK++ ++K GH+GTLDP TG L +CI + T++V
Sbjct: 3 GILNIYKPIGITSFDVVRQIKKVTGIKKIGHTGTLDPLATGVLPICIGKGTKIVDYLMKD 62
Query: 163 GKEYVCVARL------HDK------VPDVA----KVARALEALTGAVFQRPPLISAVK-- 204
K Y +L +D+ + DV ++ + + G + Q PP+ SA+K
Sbjct: 63 FKVYKAELKLGVITDTYDREGKELSIKDVNVSKKEIIDKINSFKGNILQVPPMYSALKVN 122
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R R TIY+ ++L D+ + F + C GTY+R++C +G
Sbjct: 123 GKRLYELAREGKEVERVARPVTIYDIEIL--DISIPYIKFMVKCSKGTYIRSLCYDIGDN 180
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG GG M L RV+SG + DN +T+ ++ DN D I+P++ L+ Y
Sbjct: 181 LGCGGAMWNLERVQSGSFNK-DNSITLENLTK-----DNVED------YIIPIDDALSQY 228
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLL----RFENDIEVGEEVVLMTTKGEAVALGI 360
+ +V KL+I G+ R N IE+ + + + + LG+
Sbjct: 229 DKAIVNSKA-------EKLLINGVRIADKRLLNTIELNKLYRIYNEDNKFLGLGL 276
>gi|365157183|ref|ZP_09353464.1| tRNA pseudouridine synthase B [Bacillus smithii 7_3_47FAA]
gi|363625917|gb|EHL76928.1| tRNA pseudouridine synthase B [Bacillus smithii 7_3_47FAA]
Length = 302
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 123/269 (45%), Gaps = 49/269 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L K +SH+ V I+++ + ++ GH+GTLDP V+G L +CI +AT++ + A
Sbjct: 3 GIVALWKERGMTSHDCVFQIRKLFKTKRVGHTGTLDPNVSGVLPICIGKATKIAEYMTNA 62
Query: 163 GKEY-------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
GK Y V V ++ DK ++ E LTG + Q PP+ SAV
Sbjct: 63 GKTYEGEVTIGLSTTTEDADGETVEVKKV-DKTFSRKEILDVFERLTGTIEQTPPMFSAV 121
Query: 204 K-----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTM 242
K R R TIYE +LL+ + + + F + C GTY+RT+
Sbjct: 122 KVNGKRLYEYARQGLEVERPKRTVTIYELELLDDREWFSGEFVSIPFRVVCSKGTYIRTL 181
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
V +G LG HM +L R SG + D VT+ D+ ++ L ++ PL
Sbjct: 182 AVMIGQELGYPAHMSKLTRTASGGFSKTD-CVTLSDL-------SKLAEKNQLETILFPL 233
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIP 331
E ++ + + D + GA L P
Sbjct: 234 EQGVSHLPKWNISDKVAEKVKNGAILEKP 262
>gi|419838989|ref|ZP_14362407.1| tRNA pseudouridine synthase B [Haemophilus haemolyticus HK386]
gi|386909700|gb|EIJ74364.1| tRNA pseudouridine synthase B [Haemophilus haemolyticus HK386]
Length = 306
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 48/292 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAKGQVMETREVHVETQQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY+ + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYNAP--YLTLEVHCSKGTYIRTLVDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMMPIDELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
L + AI +G + ++F N+ ++ +V L + E + LG+A
Sbjct: 246 PALRLDAEQSKAIGFGQR------VKFANEQQLSGQVRLFS--AENLFLGVA 289
>gi|389774738|ref|ZP_10192857.1| tRNA pseudouridine synthase B [Rhodanobacter spathiphylli B39]
gi|388438337|gb|EIL95092.1| tRNA pseudouridine synthase B [Rhodanobacter spathiphylli B39]
Length = 308
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 124/264 (46%), Gaps = 38/264 (14%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+GI+ LDKP SS++ + ++R+LR K GH+G LDP TG L +C AT+L S G
Sbjct: 13 HGIVLLDKPLGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLG 72
Query: 162 AGKEYVCVARLH-------------DKVP----DVAKVARALEALTGAVFQRPPLISAVK 204
A K Y+ RL ++P D A + AL L G + Q PP+ SA+K
Sbjct: 73 ARKAYLAECRLGISTDTADSEGEIVRRLPVPPLDAAAIETALARLRGHILQVPPMYSALK 132
Query: 205 R-------QLRIRTIYESKLLEYDVDRHLVV--------FWISCEAGTYVRTMCVHLGLI 249
+ R + + E DV R ++ + C +GTYVR++ V LG
Sbjct: 133 HDGERLYAKARRGEVVDVPAREVDVHRLELLERDGETLRLLVECGSGTYVRSLAVDLGED 192
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR+ E MVT+ + A D+A L ++P+ L+
Sbjct: 193 LGCGAHLTALRRIWVEPFREP-QMVTLAQLEQAA----EQGDDALL-AWLLPVSAGLSDL 246
Query: 310 KRLVVKDTTVNAICYGAKLMIPGL 333
L + + AI G ++ +PGL
Sbjct: 247 PVLHLDEAQSMAISRGQQISLPGL 270
>gi|415886617|ref|ZP_11548397.1| tRNA pseudouridine synthase B [Bacillus methanolicus MGA3]
gi|387587304|gb|EIJ79627.1| tRNA pseudouridine synthase B [Bacillus methanolicus MGA3]
Length = 304
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 136/295 (46%), Gaps = 52/295 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ L KP +SH+ V ++++L+++K GH+GTLDP V G L +CI +AT++ + A
Sbjct: 3 GILPLFKPKGMTSHDCVFKLRKMLKIKKIGHTGTLDPDVNGVLPICIGKATKVAEYITEA 62
Query: 163 GKEY---VCVAR----------LHDKVPDVAKVAR-----ALEALTGAVFQRPPLISAVK 204
GK Y V + + +++P + R L + G + Q PP+ SAVK
Sbjct: 63 GKTYEGEVTIGYSTTTEDASGDIVEQMPGIKTFTREEILQVLHSFRGEIVQTPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R R TIY +LL+ ++ + F +SC GTY+RT+
Sbjct: 123 VNGKRLYEYARLGIEVERPSRKVTIYSIELLDERNIFEGETVTFRFRVSCSKGTYIRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM +L R++S D++ T + Q + DN + + P+E
Sbjct: 183 VMIGEKLGFPAHMSDLIRIQSAGFTLADSL-TFEQI---QTMIDN----ETISEALFPVE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
L+ + + D + GA L P L ++ VV T G A+A+
Sbjct: 235 AALSHLPKYQLDDKVAEKVKNGAVLSTPKQLE-----KLDGPVVFETKTGIALAI 284
>gi|452974425|gb|EME74245.1| tRNA pseudouridine synthase B [Bacillus sonorensis L12]
Length = 309
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 123/272 (45%), Gaps = 50/272 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KPA +SH+ V I+++L+ +K GH+GTLDP+V+G L +CI RAT++V+
Sbjct: 4 GVLLLHKPAGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICIGRATKIVEYLTEK 63
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y + + PD V L++L G + Q PP+ SAVK
Sbjct: 64 SKTYDAEVTLGFSTETEDQTGEITETKAVSNPPDEQTVRSVLKSLEGTIEQVPPMYSAVK 123
Query: 205 RQLRIRTIYESKLLEYDVDR--------HLVV--------------FWISCEAGTYVRTM 242
+ + +YE +V+R H+ + F ++C GTYVRT+
Sbjct: 124 --VGGKKLYEYARAGIEVERPKRSITIHHIELTTGISREEGTARFRFTVTCSKGTYVRTL 181
Query: 243 CVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL 302
V +G LG HM L R SG ++ + H + + L ++P+
Sbjct: 182 AVTIGEKLGYPAHMSHLIRTASGHFSLDECLTFTH--------IEGHVASGTLSEQLVPI 233
Query: 303 EVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
E L + ++ DT + GA L PG L
Sbjct: 234 ERALDHLPKWIISDTLAKKVENGAVLETPGSL 265
>gi|422110324|ref|ZP_16380386.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378867|emb|CBX22572.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 306
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 130/302 (43%), Gaps = 55/302 (18%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P KRP+ G++ LDKP SS+ + +R+ R EK GH+G LDP TG L VC
Sbjct: 5 PAKRPV-----NGVLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFG 59
Query: 151 RATRLVKSQQGAGKEYVCVARLHDKVP----------------DVAKVARALEALTGAVF 194
AT+ + A K Y +L + +AK A +ALTG +
Sbjct: 60 EATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIVATARADISLAKFQTACQALTGNIR 119
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q PP+ SA+K R+ R T+Y + E+D + V + C GT
Sbjct: 120 QVPPMFSALKHEGKPLYEYARKGIVIERKARDITVYAIDIAEFDAPK--AVINVRCSKGT 177
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ + +G H+ LRR + + H + L + RD
Sbjct: 178 YIRTLSEDIAKHIGTFAHLTALRRTETA----GFTIAQSHTLEALANLDETRRDS----- 228
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVA 357
+++P +VL++ + + V+ D V+ + G + P RF+ D+ V + T G V
Sbjct: 229 LLLPCDVLVSHFPQTVLNDYAVHMLRCGQR---P---RFDEDLPSDTPVRVYTENGRFVG 282
Query: 358 LG 359
L
Sbjct: 283 LA 284
>gi|254452747|ref|ZP_05066184.1| tRNA pseudouridine synthase B [Octadecabacter arcticus 238]
gi|198267153|gb|EDY91423.1| tRNA pseudouridine synthase B [Octadecabacter arcticus 238]
Length = 301
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 128/290 (44%), Gaps = 47/290 (16%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G + +DKPA +S VV +K L +K GH+GTLDP TG L V + AT+ V
Sbjct: 11 HGWLVVDKPAGITSTSVVNKVKWALDAKKAGHAGTLDPDATGVLAVALGEATKTVPYITD 70
Query: 162 AGKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK- 204
A K Y RL DK P ++ L G + Q PPL SAVK
Sbjct: 71 ALKAYTFTVRLGQKTNTDDAEGEVTAESDKRPTDDEIKAQLAQFVGDIMQTPPLFSAVKI 130
Query: 205 --------------RQLRIRTIYESKLLEYD-VDRHLVVFWISCEAGTYVRTMCVHLGLI 249
++ R ++ +LL D D V ++C G YVR + LG
Sbjct: 131 DGERAYKRARDGEEFEIAARPLWVEELLLTDRPDADHVKLEMTCGKGGYVRAIARDLGDA 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG GH++ELRRV SG D VT+ + D + L +I+PLE L
Sbjct: 191 LGCFGHVRELRRVWSGPFDAKDG-VTLDQL-------DTHAKTDALDHLILPLEAGLIDL 242
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
R+ +++V + G ++ G D+E GEE G+A+A+G
Sbjct: 243 PRVHCPESSVAKLRNGNPALVMG------DVEYGEE-CWADHAGQAIAVG 285
>gi|384181620|ref|YP_005567382.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327704|gb|ADY22964.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 307
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|42782898|ref|NP_980145.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10987]
gi|54036501|sp|Q732R2.1|TRUB_BACC1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|42738825|gb|AAS42753.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10987]
Length = 307
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ + +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCIFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------VLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|256379825|ref|YP_003103485.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827]
gi|255924128|gb|ACU39639.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827]
Length = 299
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 118/249 (47%), Gaps = 46/249 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKP +SH+VVA ++RIL K GH+GTLDP TG L++ ++RAT+L+
Sbjct: 12 GLVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLALD 71
Query: 163 GKEYVCVARL------------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y+ RL VP+ A + + LTGA+ Q P +SAVK
Sbjct: 72 SKAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDA-IRAGVAKLTGAIQQVPSAVSAVK 130
Query: 205 -----RQLRIRTIYESKLLEYDVDRH----LVV----------FWISCEAGTYVRTMCVH 245
R+R E +L V H L + + C +GTYVR +
Sbjct: 131 VDGKRAYARVRAGEEVELPPRPVTVHRFDVLSIRREADATELDVMVECSSGTYVRALARD 190
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMV--TMHDVMDAQWL---YDNYRDEAYLRRVIM 300
LG+ LGVGGH+ LRR R +G D V T+ + D L D A+ RR I
Sbjct: 191 LGVDLGVGGHLAALRRTR---VGPFDLRVAKTLEQLADEPGLSLDLDAAVSAAFPRREIT 247
Query: 301 PLEVLLTSY 309
P EV+ S+
Sbjct: 248 PSEVVALSH 256
>gi|373467296|ref|ZP_09558596.1| tRNA pseudouridine synthase B [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371759094|gb|EHO47845.1| tRNA pseudouridine synthase B [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 306
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 48/292 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDSEGQVVETREVHIETQQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYHAP--YLTLEVHCSKGTYIRTLVDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMMPIDELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
+ AI +G + ++F ND ++ +V L + E + LG+A
Sbjct: 246 PAFHLNAEQSKAIGFGQR------VKFANDQQLSGQVRLFS--AENLFLGVA 289
>gi|421554974|ref|ZP_16000913.1| tRNA pseudouridine synthase B [Neisseria meningitidis 98008]
gi|402332127|gb|EJU67458.1| tRNA pseudouridine synthase B [Neisseria meningitidis 98008]
Length = 306
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 130/302 (43%), Gaps = 55/302 (18%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P KRP+ G++ LDKP SS+ + +R+ EK GH+G LDP TG L VC
Sbjct: 5 PAKRPV-----NGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFG 59
Query: 151 RATRLVKSQQGAGKEYVCVARL------HDKVPDVAKVAR----------ALEALTGAVF 194
AT+ + A K Y +L D ++ AR A +ALTG +
Sbjct: 60 EATKFAQYLINADKAYTATLKLGEASSTGDAEGEIVATARADISLAEFQTACQALTGNIR 119
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q PP+ SA+K R+ R T+Y + E+D + V + C GT
Sbjct: 120 QVPPMFSALKHEGKPLYEYARKGIVIERKARYITVYAIDIAEFDAPK--AVIDVRCSKGT 177
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ + +G H+ LRR + + H + L + RD
Sbjct: 178 YIRTLSEDIAKHIGTFAHLTALRRTETA----GFTIAQSHTLEALANLNETERDS----- 228
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVA 357
+++P +VL++ + + V+ D V+ + G + P RFE D+ V + T G V
Sbjct: 229 LLLPCDVLVSHFPQTVLNDYAVHMLHCGQR---P---RFEEDLPSDTPVRVYTENGRFVG 282
Query: 358 LG 359
L
Sbjct: 283 LA 284
>gi|417845669|ref|ZP_12491695.1| tRNA pseudouridine synthase B [Haemophilus haemolyticus M21639]
gi|341954738|gb|EGT81211.1| tRNA pseudouridine synthase B [Haemophilus haemolyticus M21639]
Length = 306
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 134/292 (45%), Gaps = 48/292 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAEGQVVETREVHIETQQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITLEREARPITIFELNFIEYHAP--YLTLEVHCSKGTYIRTLVDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMMPIDELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
L + AI +G + ++F ND ++ +V L + E + LG+A
Sbjct: 246 PALHLDAEQSKAIGFGRR------VKFANDEQLSGQVRLFS--AENLFLGVA 289
>gi|422409543|ref|ZP_16486504.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL F2-208]
gi|313608975|gb|EFR84721.1| tRNA pseudouridine synthase B [Listeria monocytogenes FSL F2-208]
Length = 304
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 136/283 (48%), Gaps = 63/283 (22%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GII L K +SH+ V +++IL +K GH+GTLDP+V G L +CI RAT+L +
Sbjct: 3 GIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDE 62
Query: 163 GKEYVCVARL---------------HDKVPDVA--KVARALEALTGAVFQRPPLISAVK- 204
GK YV L ++ D++ ++ AL LTG + Q PP+ SAVK
Sbjct: 63 GKVYVAEITLGKSTTTEDATGETVMTKELADISADELQAALAKLTGKITQIPPMFSAVKV 122
Query: 205 -------------------RQLRIRTIY----ESKLLEYDVDRHLVVFWISCEAGTYVRT 241
RQ+ I ++ E+ L E + L ISC GTY+RT
Sbjct: 123 NGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNEANPTFQL---EISCGKGTYIRT 179
Query: 242 MCVHLGLILGVGGHMQELRRVRSGILGEND--NMVTMHDVMDAQWLYDNYRDEAYLRRVI 299
+ V +G +LG HM +L R+RSG + D +V + ++M A D ++L
Sbjct: 180 LAVMVGELLGYPAHMSKLERIRSGFFKKEDCLTLVEIDEMMQAS-------DSSFL---- 228
Query: 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
PLE + S +LV+ D ++ AK++ GLL IEV
Sbjct: 229 YPLEKGIESMAKLVI-DEEIH-----AKVLNGGLLPKSLFIEV 265
>gi|254670018|emb|CBA04779.1| tRNA pseudouridine 55 synthase [Neisseria meningitidis alpha153]
Length = 316
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 127/290 (43%), Gaps = 50/290 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS+ + +R+ R EK GH+G LDP TG L VC AT+ + A
Sbjct: 22 GVLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFSQYLLDA 81
Query: 163 GKEYVCVARL------HDKVPDVAKVAR----------ALEALTGAVFQRPPLISAVK-- 204
K Y +L D ++ AR A +ALTG + Q PP+ SA+K
Sbjct: 82 DKAYTATLKLGEASSTGDAEGEIVATARADISLAEFQTACKALTGDIRQVPPMFSALKHE 141
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R T+Y + E+D + V + C GTY+RT+ +
Sbjct: 142 GKPLYEYARKGIVIERKARYITVYAIDIAEFDAPK--AVIDVRCSKGTYIRTLSEDIAKH 199
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
+G H+ LRR + + H + L + RD +++ +VL++ +
Sbjct: 200 IGTFAHLTALRRTETA----GFTIAQSHTLEALANLNETERDS-----LLLSCDVLVSHF 250
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
+ V+ D V+ + G + P RFE D+ G V + T GE V L
Sbjct: 251 PQTVLNDYAVHMLRCGQR---P---RFEEDLPSGTPVCVYTEIGEFVGLA 294
>gi|229162746|ref|ZP_04290703.1| tRNA pseudouridine synthase B [Bacillus cereus R309803]
gi|228620628|gb|EEK77497.1| tRNA pseudouridine synthase B [Bacillus cereus R309803]
Length = 307
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V L ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEEVLAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|387140860|ref|YP_005696838.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1/06-A]
gi|355392651|gb|AER69316.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1/06-A]
Length = 303
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 115/237 (48%), Gaps = 47/237 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VV ++RI ++ GH+GTLDP TG L+V I+R T+ + +
Sbjct: 9 GLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68
Query: 163 GKEYVCVARL------HDKVPDV--------------AKVARALEALTGAVFQRPPLISA 202
K Y RL DK +V A +A + TG + QRP +SA
Sbjct: 69 TKSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSA 128
Query: 203 VK------RQL-----------RIRTIYESKLLEYDVDRHLVVFWI------SCEAGTYV 239
+K Q+ R TIY +L D+ R L + +I +C +GTY+
Sbjct: 129 IKINGKRAHQMVREGQEVEIPPRPVTIYNFDVL--DISRSLPLEFIDIEVEVTCSSGTYI 186
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLR 296
R++ LG L VGGH+ LRR+ G +D +T+ D+ A L + DE+ R
Sbjct: 187 RSLARDLGSALDVGGHLTALRRLSVGPFSLSDT-ITLDDLTAAPKLSLSL-DESLTR 241
>gi|148825873|ref|YP_001290626.1| tRNA pseudouridine synthase B [Haemophilus influenzae PittEE]
gi|229846815|ref|ZP_04466922.1| tRNA pseudouridine synthase B [Haemophilus influenzae 7P49H1]
gi|386265781|ref|YP_005829273.1| tRNA pseudouridine synthase B [Haemophilus influenzae R2846]
gi|189036486|sp|A5UBU2.1|TRUB_HAEIE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|148716033|gb|ABQ98243.1| tRNA pseudouridine synthase B [Haemophilus influenzae PittEE]
gi|229810304|gb|EEP46023.1| tRNA pseudouridine synthase B [Haemophilus influenzae 7P49H1]
gi|309973017|gb|ADO96218.1| tRNA pseudouridine synthase B [Haemophilus influenzae R2846]
Length = 306
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 48/292 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAEGQVVETREVHVETPQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYHAP--FLTLEVHCSKGTYIRTLVDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMMPINELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361
L + AI +G + ++F N+ ++ +V L + E + LG+A
Sbjct: 246 PALHLDVEQSKAIGFGQR------VKFANEQQLSGQVRLFS--AENLFLGVA 289
>gi|334365475|ref|ZP_08514428.1| tRNA pseudouridine synthase B [Alistipes sp. HGB5]
gi|313158239|gb|EFR57641.1| tRNA pseudouridine synthase B [Alistipes sp. HGB5]
Length = 238
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 96/201 (47%), Gaps = 41/201 (20%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVE-----KTGHSGTLDPKVTGNLIVCIDRATRLVKS 158
I LDKP +S +VV IK LR K GH+GTLDP TG L+VCI RAT++V +
Sbjct: 17 IAVLDKPLRWTSTDVVRKIKFTLRRLGYRKIKVGHAGTLDPLATGILLVCIGRATKMVDA 76
Query: 159 QQGAGKEYVCVARLHDKVPDV-----------------AKVARALEALTGAVFQRPPLIS 201
Q KEYV L P KV AL +LTG Q PP+ S
Sbjct: 77 LQAEEKEYVADVMLGATTPSYDLEHPVDRTFPTEHITREKVLEALSSLTGERLQEPPVYS 136
Query: 202 AVK-------------RQLRIR----TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
A K ++ +R IYE +LLEYD+ R + + C GTY+R++
Sbjct: 137 AKKIDGTRAYELARAGEEVTMRKATVNIYELELLEYDLPR--IRIRVRCSKGTYIRSLAH 194
Query: 245 HLGLILGVGGHMQELRRVRSG 265
+G L G H+ LRR RSG
Sbjct: 195 EIGQALESGAHLTSLRRTRSG 215
>gi|384135118|ref|YP_005517832.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339289203|gb|AEJ43313.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 302
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 117/246 (47%), Gaps = 47/246 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKP +SH+VV ++R L V + GH+GTLDP TG L++C+ R TRL++
Sbjct: 6 GVLLIDKPKGMTSHDVVHRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQG 65
Query: 163 GKEYV-----------------CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV-- 203
KEY VA+ D+A V A LTG + QRPP SA+
Sbjct: 66 DKEYCGTVVFGVGTDTDDAEGTVVAQAQATGLDLAAVREAAARLTGEIRQRPPAYSAIHI 125
Query: 204 ------------------KRQLRIRTIYESKLLEYDVDRHLVV--FWISCEAGTYVRTMC 243
+R + +RT+ L E+ + L V F + C GTYVR +C
Sbjct: 126 DGRRAYDLARQGKKVEIPERTVHVRTL---TLDEFHHEGELAVARFHVRCSKGTYVRALC 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDE-AYLRRVIM-- 300
LG ++GV HM+ LRR+ G ++ + + D M + + RD YL + M
Sbjct: 183 RDLGALVGVPAHMRSLRRLAIGC-ARVEDAIPLDDWMASANPASHLRDPLLYLEDLPMWH 241
Query: 301 -PLEVL 305
P EVL
Sbjct: 242 PPREVL 247
>gi|218290091|ref|ZP_03494253.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
LAA1]
gi|218239800|gb|EED06989.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
LAA1]
Length = 302
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 45/240 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKP +SH+VV ++R L V + GH+GTLDP TG L++C+ R TRL++
Sbjct: 6 GVLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQG 65
Query: 163 GKEY-----------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV-- 203
KEY VA+ D+A V +A LTG + QRPP SAV
Sbjct: 66 DKEYSGTVVFGVGTDTDDAEGTVVAQAPATGLDLAAVRQAALRLTGEIRQRPPQYSAVHI 125
Query: 204 -------------KRQLRIRTIYESKLLEYDVDRH-----LVVFWISCEAGTYVRTMCVH 245
+ +L RT+ + + D RH + F + C GTYVR +C
Sbjct: 126 DGRRAYDLARQGKQVELPERTV-QVQAFTLDEFRHEGEVAVARFRVRCSKGTYVRALCRD 184
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVL 305
LG +LGV HM+ LRR+ G ++ +++ D W+ + +YLR ++ LE L
Sbjct: 185 LGALLGVPAHMRSLRRLAIGC-ARVEDAISLDD-----WMASD-DPVSYLRDPLLYLEGL 237
>gi|237748742|ref|ZP_04579222.1| tRNA pseudouridine synthase B [Oxalobacter formigenes OXCC13]
gi|229380104|gb|EEO30195.1| tRNA pseudouridine synthase B [Oxalobacter formigenes OXCC13]
Length = 318
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 122/263 (46%), Gaps = 44/263 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKPA SS++ + KRI+ +K GH+GTLDP TG L +C AT+ + A
Sbjct: 15 GVLLLDKPAGISSNDALIRAKRIMNAKKAGHTGTLDPFATGLLPICFGEATKFSQDLLDA 74
Query: 163 GKEYVCVARL------HDKVPDVAK-----------VARALEALTGAVFQRPPLISAVK- 204
K Y V L D +V K + AL G +FQ PP+ SA+K
Sbjct: 75 DKTYETVVHLGISTTTGDTEGEVLKTSEAVLFSQDEIESALAMFRGDIFQIPPMYSALKR 134
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TI E LL++ + + ++C GTYVR + +G
Sbjct: 135 DGKPLYEYARAGVELEREARPVTISELTLLDW--ESPFLTLRVACSKGTYVRVLGEDIGN 192
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRV-IMPLEVLLT 307
LG G H++ LRR+R G LG + V++ D+ A + +E R + P++ LL+
Sbjct: 193 ALGCGAHLKALRRIRVGSLG-IEKAVSLTDMETA------FPEETAARHEKLEPVDYLLS 245
Query: 308 SYKRLVVKDTTVNAICYGAKLMI 330
S+ L + G +L +
Sbjct: 246 SFPALSLNAMLTKRFLNGQRLSL 268
>gi|379715571|ref|YP_005303908.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
316]
gi|377654277|gb|AFB72626.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
316]
Length = 302
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 46/226 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VV ++RI ++ GH+GTLDP TG L+V I+R T+ + +
Sbjct: 9 GLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68
Query: 163 GKEYVCVARL------HDKVPDV--------------AKVARALEALTGAVFQRPPLISA 202
K Y RL DK +V A +A + TG + QRP +SA
Sbjct: 69 TKSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSA 128
Query: 203 VK------RQL-----------RIRTIYESKLLEYDVDRHLVVFWI------SCEAGTYV 239
+K Q+ R TIY +L D+ R L + +I +C +GTY+
Sbjct: 129 IKINGKRAHQMVREGQEVEIPPRPVTIYNFDVL--DISRSLPLEFIDIEVEVTCSSGTYI 186
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
R++ LG L VGGH+ LRR+ G +D +T+ D+ A L
Sbjct: 187 RSLARDLGSALDVGGHLTALRRLSVGPFSLSDT-ITLDDLTAAPKL 231
>gi|313890069|ref|ZP_07823704.1| tRNA pseudouridine synthase B [Streptococcus pseudoporcinus SPIN
20026]
gi|416851592|ref|ZP_11908737.1| tRNA pseudouridine synthase B [Streptococcus pseudoporcinus LQ
940-04]
gi|313121430|gb|EFR44534.1| tRNA pseudouridine synthase B [Streptococcus pseudoporcinus SPIN
20026]
gi|356739081|gb|EHI64313.1| tRNA pseudouridine synthase B [Streptococcus pseudoporcinus LQ
940-04]
Length = 292
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 47/267 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIIN+ K A +SH+VV ++R+LR +K GH GTLDP V G L + + +ATR+++ A
Sbjct: 3 GIINVKKEAGMTSHDVVFRLRRLLREKKIGHGGTLDPDVVGVLPIAVGKATRVLEFMTDA 62
Query: 163 GKEY---VCVARLHD------KVPDVAKVARALE---------ALTGAVFQRPPLISAVK 204
GK Y V + D + + V R LE + G + Q PP+ SAVK
Sbjct: 63 GKVYEGRVTLGFSTDTEDASGSLVEQTPVTRPLEEELVDEVMASFQGEIIQTPPMYSAVK 122
Query: 205 --------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
RQ+ I + L Y+ + F ++C GTYVRT+ V
Sbjct: 123 VKGRKLYEYARAGEEVERPQRQVTISEFKRTSPLIYENNLCHFSFKVACSKGTYVRTLAV 182
Query: 245 HLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEV 304
LG LG HM L R S L D +D D D ++L +P+E
Sbjct: 183 DLGQKLGYASHMSYLERTASAGLQLEDAFTLA--AIDKMLTED---DHSFL----LPIEY 233
Query: 305 LLTSYKRLVVKDTTVNAICYGAKLMIP 331
+ +L++ + + +G ++ +P
Sbjct: 234 GVAELAKLMISEQEAKELSFGRRIQLP 260
>gi|423458007|ref|ZP_17434804.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X2-1]
gi|401148391|gb|EJQ55884.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X2-1]
Length = 307
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 47/251 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR ++ GH+GTLDP VTG L +C+ RAT++ +
Sbjct: 3 GVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
K Y V + D+V +V AL ALTG + Q PP+ SAVK
Sbjct: 63 TKTYEGEVTLGFSTTTEDASGEVVERKNVDRVITRKEVEGALAALTGTIEQMPPMFSAVK 122
Query: 205 -----------------RQLRIRTIYESKLLE----YDVDRHLVVFWISCEAGTYVRTMC 243
R +R TI+E LL+ ++ + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGETISFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG + D + + + +N ++ + + + ++
Sbjct: 183 VMIGEKLGFPSHMSHLVRTASGEF-------LLEDCISFEEIEENVQN-GTVESIFISID 234
Query: 304 VLLTSYKRLVV 314
L+ + ++VV
Sbjct: 235 EALSKFPKMVV 245
>gi|319938940|ref|ZP_08013304.1| tRNA pseudouridine synthase B [Streptococcus anginosus 1_2_62CV]
gi|319811990|gb|EFW08256.1| tRNA pseudouridine synthase B [Streptococcus anginosus 1_2_62CV]
Length = 292
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + + TRLV+ Q
Sbjct: 3 GIINLKKEAGMTSHDAVFKLRKILQTKKIGHGGTLDPDVVGVLPIAVGKTTRLVEFMQDE 62
Query: 163 GKEYV-------------CVARLHDKVP-----DVAKVARALEALTGAVFQRPPLISAV- 203
GK Y + K P D V A+ +LTG + Q PP+ SAV
Sbjct: 63 GKIYEGEVILGFSTTTEDASGEVLAKTPVLAPLDAKLVDEAIASLTGLITQIPPMYSAVK 122
Query: 204 -------------------KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV 244
KRQ+ I + + + Y+ D F + C GTYVRT+ V
Sbjct: 123 VNGRKLYEYARTGEAVEKPKRQVTIYSFERTGAIVYESDLARFPFRVKCSKGTYVRTLAV 182
Query: 245 HLGLILGVGGHMQELRRVRS 264
LG LG HM +L R +
Sbjct: 183 DLGAKLGYASHMSQLTRTSA 202
>gi|433515871|ref|ZP_20472639.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2004090]
gi|433528442|ref|ZP_20485051.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM3652]
gi|433530643|ref|ZP_20487232.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM3642]
gi|433532912|ref|ZP_20489475.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2007056]
gi|433534718|ref|ZP_20491258.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2001212]
gi|432252797|gb|ELL08147.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2004090]
gi|432265243|gb|ELL20439.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM3652]
gi|432266735|gb|ELL21917.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2007056]
gi|432267150|gb|ELL22331.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM3642]
gi|432271460|gb|ELL26585.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2001212]
Length = 306
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 131/302 (43%), Gaps = 55/302 (18%)
Query: 91 PLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 150
P KRP+ G++ LDKP SS+ + + + R EK GH+G LDP TG L VC
Sbjct: 5 PAKRPV-----NGVLLLDKPEGLSSNTALQKTRHLFRAEKAGHTGVLDPLATGLLPVCFG 59
Query: 151 RATRLVKSQQGAGKEYVCVARL------HDKVPDVAKVAR----------ALEALTGAVF 194
AT+ + A K Y +L D ++ AR A +ALTG +
Sbjct: 60 EATKFAQYLINADKAYTATLKLGEASSTGDAEGEIVATARADISLAEFQTACKALTGDIR 119
Query: 195 QRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGT 237
Q PP+ SA+K R+ R T+Y + E+D + V + C GT
Sbjct: 120 QVPPMFSALKHEGKPLYEYARKGIVIERKARYITVYAIDIAEFDAPK--AVIDVRCSKGT 177
Query: 238 YVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRR 297
Y+RT+ + +G H+ LRR + + H + L + RD
Sbjct: 178 YIRTLSEDIAKHIGTFAHLTALRRTETA----GFTIAQSHTLEALANLNETERDS----- 228
Query: 298 VIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVA 357
+++ +VL++ + + V+ D V+ + G + P RFE D+ G V + T GE V
Sbjct: 229 LLLSCDVLVSHFPQTVLNDYAVHMLRCGQR---P---RFEEDLPSGTPVRVYTEIGEFVG 282
Query: 358 LG 359
L
Sbjct: 283 LA 284
>gi|317507391|ref|ZP_07965126.1| tRNA pseudouridine synthase B [Segniliparus rugosus ATCC BAA-974]
gi|316254339|gb|EFV13674.1| tRNA pseudouridine synthase B [Segniliparus rugosus ATCC BAA-974]
Length = 303
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 100/206 (48%), Gaps = 43/206 (20%)
Query: 102 YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQG 161
+G++ +DKP +SH+VVA +R R K GH+GTLDP TG L++ + +ATRL+
Sbjct: 9 HGLVLVDKPQGMTSHDVVARARRCFRTRKVGHAGTLDPMATGVLVLGLGKATRLLGRLTS 68
Query: 162 AGKEYVCVARLHDKVPD-----------------VAKVARALEALTGAVFQRPPLISAVK 204
K YV RL ++ + +V +E LTG + Q PP +SA+K
Sbjct: 69 DEKRYVGTIRLGERSSSDDADGEILGRASTAALALGQVRAGIERLTGEIAQVPPAVSAIK 128
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVV-----FW-----ISCEAGTYV 239
+L+ R + + E +R +V W + C AGTY+
Sbjct: 129 VGGVRAHAAARAGEALELKARQVVVRR-FELAAERRIVGEDGVELWDLDVEVDCTAGTYI 187
Query: 240 RTMCVHLGLILGVGGHMQELRRVRSG 265
R++ LG LGVGGH+ LRRV SG
Sbjct: 188 RSLARDLGEGLGVGGHLTRLRRVASG 213
>gi|16273203|ref|NP_439441.1| tRNA pseudouridine synthase B [Haemophilus influenzae Rd KW20]
gi|1174805|sp|P45142.1|TRUB_HAEIN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|1574748|gb|AAC22938.1| tRNA pseudouridine 55 synthase (truB) [Haemophilus influenzae Rd
KW20]
Length = 312
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 134/291 (46%), Gaps = 48/291 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ LDKP SS++++ +KR+ + K GH+G LDP TG L +C+ AT+ + A
Sbjct: 13 GVFLLDKPQGMSSNDIMQKVKRLFQANKAGHTGALDPLATGMLPICLGEATKFSQFLLDA 72
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y+ A+L ++ + ++ ALE G + Q P + SA+K
Sbjct: 73 DKRYLVTAKLGERTDTSDAEGQVVETREVNLETQQILTALEQFRGDILQVPTMFSALKHN 132
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+E +EY+ + + C GTY+RT+ LG +
Sbjct: 133 GKPLYEYARQGITVEREARPITIFELNFIEYNAP--FLTLEVHCSKGTYIRTLVDDLGEV 190
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR + + M + + Q L +++ + L R+++P + ++
Sbjct: 191 LGCGAHVTMLRRTAVA----DYPVAEMMPINELQLLAESF-PLSELDRLLLPTDTAVSKL 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
L + AI +G + ++F N+ ++ +V L + E + LG+
Sbjct: 246 PALHLDAEQSKAIGFGQR------VKFANEQQLSGQVRLFS--AENLFLGV 288
>gi|445377390|ref|ZP_21426671.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5460]
gi|445391529|ref|ZP_21428391.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5461]
gi|444749878|gb|ELW74746.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5461]
gi|444749972|gb|ELW74831.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5460]
Length = 293
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 38/214 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL +K GH GTLDP VTG L + + +ATR+++ A
Sbjct: 4 GIINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEA 63
Query: 163 GKEY---VCV----------ARLHDKVP----DVAKVARALEALTGAVFQRPPLISAVK- 204
GK Y + + + P D A V +A+ + G + Q PP+ SAVK
Sbjct: 64 GKVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKI 123
Query: 205 -------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
RQ++I + +E + F ++C GTYVRT+ V
Sbjct: 124 NGKKLYEYARAGEEVERPQRQVKITEFVRTSPIELENGTARFTFRVACSKGTYVRTLSVD 183
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
LG+ LG HM LRR S L D+ +T+ +
Sbjct: 184 LGVKLGFASHMSALRRTASAGL-TLDSSLTLSQI 216
>gi|22537158|ref|NP_688009.1| tRNA pseudouridine synthase B [Streptococcus agalactiae 2603V/R]
gi|25011087|ref|NP_735482.1| tRNA pseudouridine synthase B [Streptococcus agalactiae NEM316]
gi|76788553|ref|YP_329714.1| tRNA pseudouridine synthase B [Streptococcus agalactiae A909]
gi|406709459|ref|YP_006764185.1| tRNA pseudouridine synthase B [Streptococcus agalactiae
GD201008-001]
gi|421147355|ref|ZP_15607045.1| tRNA pseudouridine synthase B [Streptococcus agalactiae GB00112]
gi|424049469|ref|ZP_17787020.1| tRNA pseudouridine synthase B [Streptococcus agalactiae ZQ0910]
gi|54039786|sp|P65857.1|TRUB_STRA5 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|54042091|sp|P65856.1|TRUB_STRA3 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|91208106|sp|Q3K189.1|TRUB_STRA1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|22534021|gb|AAM99881.1|AE014237_15 tRNA pseudouridine synthase B [Streptococcus agalactiae 2603V/R]
gi|23095486|emb|CAD46692.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563610|gb|ABA46194.1| tRNA pseudouridine synthase B [Streptococcus agalactiae A909]
gi|389649140|gb|EIM70625.1| tRNA pseudouridine synthase B [Streptococcus agalactiae ZQ0910]
gi|401686033|gb|EJS82023.1| tRNA pseudouridine synthase B [Streptococcus agalactiae GB00112]
gi|406650344|gb|AFS45745.1| tRNA pseudouridine synthase B [Streptococcus agalactiae
GD201008-001]
Length = 294
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 126/267 (47%), Gaps = 48/267 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL +K GH GTLDP V G L + + +ATR+++ +
Sbjct: 4 GIINLKKEAGMTSHDAVFKLRKILHTKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMTES 63
Query: 163 GKEY-----------------VCVARLHDKVPDVAK--VARALEALTGAVFQRPPLISAV 203
GK Y ++R D+++ V A+++ TG + Q PP+ SAV
Sbjct: 64 GKIYEGEITLGYATSTEDSSGEVISRTPLTQSDLSEDVVDHAMKSFTGPITQVPPMYSAV 123
Query: 204 --------------------KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMC 243
KRQ+ I + L ++ F++SC GTYVRT+
Sbjct: 124 KVNGKKLYEYARSGEEVERPKRQITISEFRRTSPLYFEKGICRFSFYVSCSKGTYVRTLA 183
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V LG+ LG HM L+R S L ++ T+ ++ + Y+ E + ++P+E
Sbjct: 184 VDLGIKLGYASHMSFLKRTSSAGLSITQSL-TLEEIN------EKYKQEDF--SFLLPIE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMI 330
+ ++ + + I YG ++++
Sbjct: 235 YGVLDLPKVNLTEEDKVEISYGRRILL 261
>gi|55822947|ref|YP_141388.1| tRNA pseudouridine synthase B [Streptococcus thermophilus CNRZ1066]
gi|62901186|sp|Q5LZV2.1|TRUB_STRT1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|55738932|gb|AAV62573.1| tRNA pseudouridine synthase B [Streptococcus thermophilus CNRZ1066]
Length = 293
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 37/199 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL +K GH GTLDP VTG L + + +ATR+++ A
Sbjct: 4 GIINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEA 63
Query: 163 GKEY---VCV----------ARLHDKVP----DVAKVARALEALTGAVFQRPPLISAVK- 204
GK Y + + + P D A V +A+ + G + Q PP+ SAVK
Sbjct: 64 GKVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKI 123
Query: 205 -------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
RQ++I + +E + F ++C GTYVRT+ V
Sbjct: 124 NGKKLYEYARAGEEVERPQRQVKITEFVRTSPIELENGTARFTFRVACSKGTYVRTLSVD 183
Query: 246 LGLILGVGGHMQELRRVRS 264
LG+ LG HM LRR S
Sbjct: 184 LGVKLGFASHMSALRRTAS 202
>gi|421865344|ref|ZP_16297024.1| tRNA pseudouridine synthase B ## tRNA Psi55 [Burkholderia
cenocepacia H111]
gi|358074807|emb|CCE47902.1| tRNA pseudouridine synthase B ## tRNA Psi55 [Burkholderia
cenocepacia H111]
Length = 310
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 44/264 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS++ + KR+L +K GH+GTLDP +G L +C AT+ + A
Sbjct: 18 GVLLLDKPVGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLDA 77
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y RL + D A V AL TG + Q PP+ SA+K
Sbjct: 78 DKTYEATMRLGQRTATGDAEGDVIDTRPVECDRAAVEAALVRFTGDIVQVPPMYSALKRD 137
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+ LL ++ V F ++C GTYVRT+ +G
Sbjct: 138 GKPLYEYARAGQTVEREGRNVTIHALDLLACELPN--VTFRVTCSKGTYVRTLAEDIGEA 195
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR G L ++ VT+ + DA + RD A+L+ P++ LL+++
Sbjct: 196 LGCGAHLTMLRRTGVGAL-TLEHAVTLDALSDAA---EAARD-AWLQ----PVDALLSTF 246
Query: 310 KRLVVKDTTVNAICYGAKLMIPGL 333
+ + D + +G +L + L
Sbjct: 247 PAIRLDDASAKRFLHGQRLPLSAL 270
>gi|55821028|ref|YP_139470.1| tRNA pseudouridine synthase B [Streptococcus thermophilus LMG
18311]
gi|418027139|ref|ZP_12665828.1| tRNA pseudouridine(38-40) synthase [Streptococcus thermophilus CNCM
I-1630]
gi|62901190|sp|Q5M4G2.1|TRUB_STRT2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|55737013|gb|AAV60655.1| tRNA pseudouridine synthase B [Streptococcus thermophilus LMG
18311]
gi|354692709|gb|EHE92518.1| tRNA pseudouridine(38-40) synthase [Streptococcus thermophilus CNCM
I-1630]
Length = 293
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 37/199 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL +K GH GTLDP VTG L + + +ATR+++ A
Sbjct: 4 GIINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEA 63
Query: 163 GKEY---VCV----------ARLHDKVP----DVAKVARALEALTGAVFQRPPLISAVK- 204
GK Y + + + P D A V +A+ + G + Q PP+ SAVK
Sbjct: 64 GKVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKI 123
Query: 205 -------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
RQ++I + +E + F ++C GTYVRT+ V
Sbjct: 124 NGKKLYEYARAGEEVERPQRQVKITEFVRTSPIELENGTARFTFRVACSKGTYVRTLSVD 183
Query: 246 LGLILGVGGHMQELRRVRS 264
LG+ LG HM LRR S
Sbjct: 184 LGVKLGFASHMSALRRTAS 202
>gi|86609658|ref|YP_478420.1| tRNA pseudouridine synthase B [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558200|gb|ABD03157.1| tRNA pseudouridine synthase B [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 299
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 100/201 (49%), Gaps = 39/201 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G +NLDKPA +SH+ VA ++R+LR K GH GTLDP TG L + + RATR + G
Sbjct: 6 GFLNLDKPAGLTSHDCVAVVRRVLRTRKVGHGGTLDPAATGVLPIAVGRATRFLSFLSGD 65
Query: 163 GKEYVCVA---------------RLHDKVPDVAK--VARALEALTGAVFQRPPLISAVKR 205
K Y RL P +++ V + L TG ++Q PPL SA+KR
Sbjct: 66 -KVYQATFRFGQRSDTDDAEGQIRLGSPCPGLSREQVEQCLREFTGEIWQVPPLYSALKR 124
Query: 206 QLR-----IRTIYESKLLEYD----VDRHL-VVFW-----------ISCEAGTYVRTMCV 244
Q + R E+ L+ + V R L ++ W ++C GTY+R +
Sbjct: 125 QGKKLYQLARAGVEAAELQLEPRRVVIRQLRILGWRAGDFPEVDLEVACGPGTYIRALAR 184
Query: 245 HLGLILGVGGHMQELRRVRSG 265
+G LG GG M LRR++SG
Sbjct: 185 DVGEKLGCGGLMSRLRRLQSG 205
>gi|206559875|ref|YP_002230639.1| tRNA pseudouridine synthase B [Burkholderia cenocepacia J2315]
gi|444364535|ref|ZP_21164848.1| tRNA pseudouridine(55) synthase [Burkholderia cenocepacia BC7]
gi|444371158|ref|ZP_21170736.1| tRNA pseudouridine(55) synthase [Burkholderia cenocepacia
K56-2Valvano]
gi|198035916|emb|CAR51808.1| tRNA pseudouridine synthase B [Burkholderia cenocepacia J2315]
gi|443592754|gb|ELT61534.1| tRNA pseudouridine(55) synthase [Burkholderia cenocepacia BC7]
gi|443595935|gb|ELT64476.1| tRNA pseudouridine(55) synthase [Burkholderia cenocepacia
K56-2Valvano]
Length = 310
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 44/264 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS++ + KR+L +K GH+GTLDP +G L +C AT+ + A
Sbjct: 18 GVLLLDKPVGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLDA 77
Query: 163 GKEYVCVARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y RL + D A V AL TG + Q PP+ SA+K
Sbjct: 78 DKTYEATMRLGQRTATGDAEGDVIDTRPVECDRAAVEAALVRFTGDIVQVPPMYSALKRD 137
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+ +LL ++ V F ++C GTYVRT+ +G
Sbjct: 138 GKPLYEYARAGQTVEREGRNVTIHALELLACELPD--VTFRVTCSKGTYVRTLAEDIGEA 195
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR G L ++ VT+ + DA + RD A+L+ P++ LL+++
Sbjct: 196 LGCGAHLTMLRRTGVGAL-TLEHAVTLDALSDAA---EAARD-AWLQ----PVDALLSTF 246
Query: 310 KRLVVKDTTVNAICYGAKLMIPGL 333
+ + D + +G +L + L
Sbjct: 247 PAIRLDDASAKRFLHGQRLPLSAL 270
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,557,522,247
Number of Sequences: 23463169
Number of extensions: 437800949
Number of successful extensions: 6531557
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 29737
Number of HSP's successfully gapped in prelim test: 63616
Number of HSP's that attempted gapping in prelim test: 3755512
Number of HSP's gapped (non-prelim): 1204635
length of query: 602
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 453
effective length of database: 8,863,183,186
effective search space: 4015021983258
effective search space used: 4015021983258
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 80 (35.4 bits)