BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007467
(602 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LD90|CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana
GN=CBF5 PE=1 SV=1
Length = 565
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/482 (80%), Positives = 425/482 (88%), Gaps = 26/482 (5%)
Query: 1 MTEVELSRSEKKKHKKKSASADAKNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSI 60
M EV++S S+KKK K +NDAA DT D++IKPQSFTP+I
Sbjct: 1 MAEVDISHSKKKKQDK------TENDAA----DTG------------DYMIKPQSFTPAI 38
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVA 120
DTSQWPILLKNYDRLNVRTGHYTP+ G+SPLKRPL +YIRYG+INLDKPANPSSHEVVA
Sbjct: 39 DTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVA 98
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH VPDVA
Sbjct: 99 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVA 158
Query: 181 KVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
KVARALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVFW+SCEAGTY+R
Sbjct: 159 KVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIR 218
Query: 241 TMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIM 300
TMCVHLGL+LGVGGHMQELRRVRSGILGEN+NMVTMHDVMDAQ++YDN RDE+YLRRVIM
Sbjct: 219 TMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIM 278
Query: 301 PLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGI 360
PLE++LTSYKRLVVKD+ VNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEA+A+GI
Sbjct: 279 PLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGI 338
Query: 361 AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEK 420
AEMTT+VMATCDHGVVA+IKRVVMDRDTYPRKWGLGPRASMKKKLIA+GKLDKHGK NEK
Sbjct: 339 AEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEK 398
Query: 421 TPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET--AG-VKKRKLDASGDSPA-LNAKK 476
TP EW+RNVVLP GGD+++A AAA E+ A+ E AG +KRK D S DSPA + KK
Sbjct: 399 TPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKK 458
Query: 477 AK 478
+K
Sbjct: 459 SK 460
>sp|O43102|CBF5_ASPFU Centromere/microtubule-binding protein cbf5 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cbf5 PE=2 SV=1
Length = 487
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 329/379 (86%), Gaps = 1/379 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ +I T WP+LLKNYD+L VRTGH+TP+P G SPLKR L YI G+INL
Sbjct: 11 DYTIKPEAGASNISTEDWPLLLKNYDKLMVRTGHFTPIPAGCSPLKRDLKSYISSGVINL 70
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 71 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 130
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D DRHL
Sbjct: 131 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNDRHL 190
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN+ +VT+HDV+DAQW+Y
Sbjct: 191 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMDENNGLVTLHDVLDAQWMY 250
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IEV EEV
Sbjct: 251 DNQRDESYLRRVIQPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVNEEV 310
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 311 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 370
Query: 407 AEGKLDKHGKLNEKTPQEW 425
+ GKLDK+G+ NE TP +W
Sbjct: 371 SAGKLDKYGRANEDTPAKW 389
>sp|P33322|CBF5_YEAST H/ACA ribonucleoprotein complex subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CBF5 PE=1
SV=1
Length = 483
Score = 613 bits (1581), Expect = e-174, Method: Compositional matrix adjust.
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>sp|O43100|CBF5_EMENI Centromere/microtubule-binding protein CBF5 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cbf5 PE=2 SV=1
Length = 481
Score = 610 bits (1573), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/410 (70%), Positives = 343/410 (83%), Gaps = 3/410 (0%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
D+ IKP++ +I+T WP+LLKNYD+L VRTGH+TP+P G SPLKR L YI G+INL
Sbjct: 6 DYTIKPEATASNINTEDWPLLLKNYDKLMVRTGHFTPIPAGSSPLKRDLKSYINSGVINL 65
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAW+KRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEYV
Sbjct: 66 DKPSNPSSHEVVAWMKRILRAEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYV 125
Query: 168 CVARLHDKVPDV-AKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
CV RLHDK+P A+ RALE LTGA+FQRPPLISAVKRQLRIRTI+ESKL E+D +RHL
Sbjct: 126 CVIRLHDKIPGGEAQFKRALETLTGALFQRPPLISAVKRQLRIRTIHESKLYEFDNERHL 185
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW+SCEAGTY+RT+CVHLGL+LGVG HMQELRRVRSG + EN+ MVT+HDV+DAQWLY
Sbjct: 186 GVFWVSCEAGTYIRTLCVHLGLLLGVGAHMQELRRVRSGAMSENEGMVTLHDVLDAQWLY 245
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR+VI PLE LLT+YKR+VVKD+ VNA+CYGAKLMIPGLLRFE IE+GEEV
Sbjct: 246 DNQRDESYLRKVIKPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIELGEEV 305
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VLMTTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP A KKKL
Sbjct: 306 VLMTTKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLK 365
Query: 407 AEGKLDKHGKLNEKTPQEWARNV--VLPPGGDSVVASLAAAAEQTVAEKE 454
+ GKLDK+G+ NE TP +W P GDS ++ A++ + KE
Sbjct: 366 SSGKLDKYGRANEATPAKWKSEYKDYSAPDGDSSQQAVDVVAKEEASPKE 415
>sp|O43101|CBF5_CANAL Centromere/microtubule-binding protein CBF5 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=CBF5 PE=3 SV=1
Length = 479
Score = 609 bits (1570), Expect = e-173, Method: Compositional matrix adjust.
Identities = 270/385 (70%), Positives = 339/385 (88%)
Query: 44 ATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYG 103
++ +D+IIKP+S +PS DTSQWP+LLKNYD+L VR+GHYTP+P G +PL R + Y+ G
Sbjct: 2 SSKEDYIIKPESVSPSNDTSQWPLLLKNYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSG 61
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+INLDKP+NPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAG
Sbjct: 62 VINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAG 121
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVD 223
KEYVC+ RLH+++ D ++ RALE LTGA+FQRPPLISAVKRQLR+RT+Y+SKL+E+D
Sbjct: 122 KEYVCIVRLHEQLKDDKELNRALENLTGALFQRPPLISAVKRQLRVRTVYDSKLIEFDNK 181
Query: 224 RHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQ 283
R L VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG + E+DN+VT+HDV+DAQ
Sbjct: 182 RGLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGAMSESDNLVTLHDVLDAQ 241
Query: 284 WLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVG 343
++YDN RDE+YLR++I PLE LL YKR+VVKD+ VN++CYGAKLMIPGLLR+E IE+
Sbjct: 242 YVYDNTRDESYLRKIIQPLESLLVGYKRVVVKDSAVNSVCYGAKLMIPGLLRYEEGIELY 301
Query: 344 EEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKK 403
+EVVLMTTKGEA+A+GIA+M+T + +CDHG+VA++KR +M+RDTYPR+WGLGP A KK
Sbjct: 302 DEVVLMTTKGEAIAIGIAQMSTVDLQSCDHGIVAKVKRCIMERDTYPRRWGLGPIAQKKK 361
Query: 404 KLIAEGKLDKHGKLNEKTPQEWARN 428
++ A+GKLDK+G++NE TP+ W ++
Sbjct: 362 QMKADGKLDKYGRVNENTPENWKKD 386
>sp|P40615|DKC1_RAT H/ACA ribonucleoprotein complex subunit 4 OS=Rattus norvegicus
GN=Dkc1 PE=1 SV=4
Length = 509
Score = 606 bits (1563), Expect = e-172, Method: Compositional matrix adjust.
Identities = 294/427 (68%), Positives = 359/427 (84%), Gaps = 7/427 (1%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A+DF+IKP+S +DTSQWP+LLKN+DRLNVRT HYTP+P G +PLKR + +Y+R G I
Sbjct: 34 AEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFI 93
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 94 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 153
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV V RLH+ + A+++RALE LTGA+FQRPPLI+AVKRQLR+RTIYES+++EYD +R
Sbjct: 154 YVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERR 213
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L VFW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++GE D+MVTMHDV+DAQ+L
Sbjct: 214 LGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYL 273
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YD++RDE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IEV +E
Sbjct: 274 YDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQE 333
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
VV++TTKGEAV + IA MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGLGP+AS KK+L
Sbjct: 334 VVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKQL 393
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKET---AGVKKRK 462
I +G LDKHG+ + TP W R+ V S + A AAE T T A + KRK
Sbjct: 394 IKQGLLDKHGRPTDGTPASWTRDYV----DYSDSSKKATAAEATPGPGVTADAASIVKRK 449
Query: 463 LDASGDS 469
D+ D+
Sbjct: 450 RDSDSDA 456
>sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 OS=Gallus gallus GN=DKC1
PE=2 SV=1
Length = 516
Score = 605 bits (1559), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/436 (67%), Positives = 362/436 (83%), Gaps = 8/436 (1%)
Query: 36 DADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D D D T ++F+IKP+S +DTSQWP+LLKN+D+LNV T HYTPLP+G +PLKR
Sbjct: 22 DEDVADIQHT-EEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPSGANPLKRE 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ DY+R G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRL
Sbjct: 81 ISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + RLH+ + A++ARA+E LTGA+FQRPPLI+AVKRQLR+RTIYES
Sbjct: 141 VKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQLRVRTIYES 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KL+EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSGILGE DNMVT
Sbjct: 201 KLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DAQW YDN +D++YLRRVI+PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR
Sbjct: 261 MHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V++TTKGEA+ L IA MTTAV++TCDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASL--AAAAEQTVAEK 453
GP+AS KK +I +G LDKHGK NE TP W + V D +S AA Q V+E
Sbjct: 381 GPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV-----DYRESSKKEAAKVPQAVSEV 435
Query: 454 ETAGVKKRKLDASGDS 469
E A +KR+ ++ ++
Sbjct: 436 ERAPKRKRESESENEA 451
>sp|Q9ESX5|DKC1_MOUSE H/ACA ribonucleoprotein complex subunit 4 OS=Mus musculus GN=Dkc1
PE=1 SV=4
Length = 509
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/447 (64%), Positives = 361/447 (80%), Gaps = 15/447 (3%)
Query: 24 KNDAAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYT 83
+ D D A+ A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYT
Sbjct: 23 QED------DVAEIQH------AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYT 70
Query: 84 PLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTG 143
PLP G +PLKR + DYIR G INLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG
Sbjct: 71 PLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTG 130
Query: 144 NLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAV 203
LIVCI+RATRLVKSQQ AGKEYV + RLH+ + +++RALE LTGA+FQRPPLI+AV
Sbjct: 131 CLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAV 190
Query: 204 KRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR 263
KRQLR+RTIYESK++EYD +R L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVR
Sbjct: 191 KRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVR 250
Query: 264 SGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAIC 323
SG++ E D+MVTMHDV+DAQWLYDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAIC
Sbjct: 251 SGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAIC 310
Query: 324 YGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
YGAK+M+PGLLR+E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+
Sbjct: 311 YGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVI 370
Query: 384 MDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASL 442
M+RDTYPRKWGLGP+AS KK +I +G LDKHGK + TP W ++ + G + + +
Sbjct: 371 MERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVTE 430
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDS 469
A A Q A E V KRK D+ +S
Sbjct: 431 AVQAPQLAA--EAVNVIKRKRDSESES 455
Score = 585 bits (1508), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/486 (59%), Positives = 362/486 (74%), Gaps = 55/486 (11%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPLP G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PGLLR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
I +G LDKHGK + TP W ++ + DS +L A Q
Sbjct: 393 IKQGLLDKHGKPTDNTPATWKQDYI--DYSDSGKNTLVTEAVQ----------------- 433
Query: 466 SGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGAD 525
+P L A+ V K+K+D E+ +
Sbjct: 434 ---APQLAAEAVNV---------------------------------IKRKRDSESESDE 457
Query: 526 TEVVEK 531
T V +
Sbjct: 458 TPTVPQ 463
>sp|Q54T81|DKC1_DICDI Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium
discoideum GN=nola4 PE=1 SV=1
Length = 540
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 268/377 (71%), Positives = 330/377 (87%), Gaps = 1/377 (0%)
Query: 50 IIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDK 109
+IKP+ TP +DTS+WP+LLKNYD+L+VRTGHYTP+PNG+SPLKRP+ +Y++YGIINLDK
Sbjct: 22 VIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHYTPIPNGHSPLKRPIKEYVKYGIINLDK 80
Query: 110 PANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCV 169
P+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGKEY+ +
Sbjct: 81 PSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGI 140
Query: 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVF 229
RLH + ++++A++ LTGA+FQRPP SAVK++LR+RTI+ SKLLE+D +R+L +
Sbjct: 141 VRLHGAIEGTTELSKAVDTLTGALFQRPPQKSAVKKRLRVRTIHNSKLLEFDPERNLGLI 200
Query: 230 WISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNY 289
W+ CEAGTY+RT+CVH+GL++GVGGHMQELRRVRSGI+ E VTMHDV DAQ+ YDN
Sbjct: 201 WVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVTMHDVKDAQYEYDNS 260
Query: 290 RDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 349
+DE+YLRRVI PLE +LT+YKR+VVKD+ +NAICYGAKLMIPGLLR+E DIE EEVVL+
Sbjct: 261 KDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEVVLI 320
Query: 350 TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEG 409
TTKGEA+A+GIA+MTTA MATCDHGVVA IKRV+MDRD YP +WGLGP+A +KK++I +G
Sbjct: 321 TTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMIKDG 380
Query: 410 KLDKHGKLNEKTPQEWA 426
KLDK GK NEKTP +W
Sbjct: 381 KLDKFGKPNEKTPSDWT 397
>sp|O13473|CBF5_KLULA Centromere/microtubule-binding protein CBF5 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CBF5 PE=3 SV=1
Length = 474
Score = 595 bits (1533), Expect = e-169, Method: Compositional matrix adjust.
Identities = 274/383 (71%), Positives = 332/383 (86%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINL 107
+F+IKP+S +PS +TS+WP+LLK+YD+L VR+GHYTP+P G SPLKR L YI G+INL
Sbjct: 4 EFVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINL 63
Query: 108 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
DKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV
Sbjct: 64 DKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYV 123
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
C+ RLHD + D ++ R LE LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+L
Sbjct: 124 CIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNLG 183
Query: 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYD 287
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDN+VT+HDVMDAQW+YD
Sbjct: 184 VFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNLVTLHDVMDAQWVYD 243
Query: 288 NYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVV 347
N RDE+YLR++I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +EVV
Sbjct: 244 NTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEVV 303
Query: 348 LMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIA 407
L+TTKGEA+A+ IA+M+T +ATCDHGVVA++KR +M+RD YPR+WGLGP A KK++ A
Sbjct: 304 LITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQMKA 363
Query: 408 EGKLDKHGKLNEKTPQEWARNVV 430
+GKLDK+G+ NE TP+ W + V
Sbjct: 364 DGKLDKYGRANENTPETWKKTYV 386
>sp|O44081|DKC1_DROME H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila
melanogaster GN=Nop60B PE=1 SV=1
Length = 508
Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust.
Identities = 270/395 (68%), Positives = 329/395 (83%), Gaps = 2/395 (0%)
Query: 38 DADDNNATAK--DFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRP 95
D DD K +F IKP S +DTSQWP+LLKN+D+LN+R+ HYTPL +G SPL R
Sbjct: 21 DGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRD 80
Query: 96 LVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+ +Y++ G INLDKP+NPSSHEVVAWIK+IL+VEKTGHSGTLDPKVTG LIVCIDRATRL
Sbjct: 81 IKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRL 140
Query: 156 VKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYES 215
VKSQQ AGKEYV + +LH V VAKV + LE L GA+FQRPPLISAVKRQLR+RT+Y+S
Sbjct: 141 VKSQQSAGKEYVAIFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDS 200
Query: 216 KLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVT 275
KLL+YD R++ VFW+SCEAG+Y+RTMCVHLGL+LGVGG M ELRRVRSGI E D MVT
Sbjct: 201 KLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVT 260
Query: 276 MHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLR 335
MHDV+DA WLY+N++DE+ LRRVI PLE LL ++KR+++KD++VNA+CYGAK+ +PG+LR
Sbjct: 261 MHDVLDAMWLYENHKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLR 320
Query: 336 FENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL 395
+E+ IE+ +E+V+ TTKGEA+ L IA MTTA MA+CDHGVVA+IKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIEIDQEIVICTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
Query: 396 GPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVV 430
GP+AS KK LIA GKLDK G+ NE TP+EW V
Sbjct: 381 GPKASAKKALIAAGKLDKFGRPNENTPKEWLTGYV 415
>sp|O60832|DKC1_HUMAN H/ACA ribonucleoprotein complex subunit 4 OS=Homo sapiens GN=DKC1
PE=1 SV=3
Length = 514
Score = 587 bits (1513), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/463 (62%), Positives = 360/463 (77%), Gaps = 43/463 (9%)
Query: 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGII 105
A++F+IKP+S +DTSQWP+LLKN+D+LNVRT HYTPL G +PLKR + DYIR G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 106 NLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
YV + RLH+ + +++RALE LTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 226 LVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285
L +FW+SCEAGTY+RT+CVHLGL+LGVGG MQELRRVRSG++ E D+MVTMHDV+DAQWL
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEE 345
YDN++DE+YLRRV+ PLE LLTS+KRLV+KD+ VNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 346 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKL 405
+V++TTKGEA+ + IA MTTAV++TCDHG+VA+IKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 406 IAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDA 465
I +G LDKHGK + TP W K+ +D
Sbjct: 393 IKQGLLDKHGKPTDSTPATW---------------------------------KQEYVDY 419
Query: 466 SGDSPALNAKKAKVEEVVE-----VEKEETVKVKKVKEDEAEE 503
S +AKK V EVV+ E +T K K+ E E++E
Sbjct: 420 SE-----SAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDE 457
>sp|O14007|CBF5_SCHPO H/ACA ribonucleoprotein complex subunit 4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cbf5 PE=3 SV=1
Length = 474
Score = 575 bits (1481), Expect = e-163, Method: Compositional matrix adjust.
Identities = 288/421 (68%), Positives = 348/421 (82%), Gaps = 6/421 (1%)
Query: 48 DFIIKPQSFTPS-IDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
DF+IKP++ + S IDT++WP+LLKN+D+L VRTGHYTP+P G +PLKRP+ +Y+ G+IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKPANPSSHEVVAW+K+ILRVEKTGHSGTLDPKVTG LI+C DRATRLVKSQQ AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VCV RLHD V VA A+E LTGA+FQRPPLISAVKRQLRIR+IYESKL+E+D +R+L
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNL 188
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSG L END++VTMHDV+DAQW+Y
Sbjct: 189 AVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIY 248
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLRRVI PLE LL YKR+VVKD+ VNAICYGAKLMIPGLLR+E IEV EE+
Sbjct: 249 DNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEI 308
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+GIA+M+T ++TCDHGVVA++KR +M+RD YPR+WGLGP++ KK L
Sbjct: 309 VLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLK 368
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV--LPPGGDSVVASLAAAAEQTVAEKETAGV---KKR 461
EGKLDK+G+ NE TP +W+++ + P + + A E E GV KKR
Sbjct: 369 KEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAAPTVEAEVNGVEDSKKR 428
Query: 462 K 462
K
Sbjct: 429 K 429
>sp|O17919|DKC1_CAEEL Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis elegans GN=K01G5.5 PE=3 SV=1
Length = 445
Score = 558 bits (1438), Expect = e-158, Method: Compositional matrix adjust.
Identities = 251/382 (65%), Positives = 314/382 (82%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F + + T +D SQWP+LLKNYD+LNVRT HYTP G SPLKR + +YI G NLD
Sbjct: 24 FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLD 83
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL KSQQGAGKEY+C
Sbjct: 84 KPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYIC 143
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH++V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+YE+K +EYD + + +
Sbjct: 144 IFKLHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGI 203
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
F CE+GTYVRT+CVHLGLILG GG MQELRR RSGI EN+NMVTMHDV+DAQ+L D
Sbjct: 204 FNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYLLDT 263
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+Y+R ++ PLE LLT +KR+VVKD+ +NAICYGAK++IPG+LR+++DIEVG+E+V+
Sbjct: 264 QKDESYMRHIVRPLEALLTQHKRVVVKDSCINAICYGAKILIPGILRYDDDIEVGKEIVI 323
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
M+TKGEA+ + IA+M T+ +A+ DHGVVA+ KRV+M+RD Y RKWGLGP AS KK+++ +
Sbjct: 324 MSTKGEAICIAIAQMNTSTIASVDHGVVAKSKRVIMERDVYGRKWGLGPVASKKKQMVKD 383
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
G LDK GK N+ TP+ WA+ V
Sbjct: 384 GLLDKFGKPNDTTPKSWAKEYV 405
>sp|Q60YA8|DKC1_CAEBR Putative H/ACA ribonucleoprotein complex subunit 4
OS=Caenorhabditis briggsae GN=CBG18316 PE=3 SV=1
Length = 445
Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust.
Identities = 251/382 (65%), Positives = 314/382 (82%)
Query: 49 FIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLD 108
F + + T +D SQWP+LLKNYD+LNVRT HYTP G SPLKR + +YI G NLD
Sbjct: 24 FQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLD 83
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KP+NPSSHEVV+WIKRILR EKTGHSGTLDPKV+G LIVCIDR TRL KSQQGAGKEY+C
Sbjct: 84 KPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYIC 143
Query: 169 VARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVV 228
+ +LH++V D KV +ALE LTGA+FQRPPLISAVKRQLRIRT+YE+K +EYD + + +
Sbjct: 144 IFKLHEEVEDERKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGI 203
Query: 229 FWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDN 288
F CE+GTYVRT+CVHLGLILG GG MQELRR RSGI EN+NMVTMHDV+DAQ++ D
Sbjct: 204 FNCICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYMLDT 263
Query: 289 YRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVL 348
+DE+Y+R ++ PLE LLT +KR+VVKD+ VNAICYGAK++IPG+LR+++DIEVG+E+V+
Sbjct: 264 QKDESYMRHIVRPLEALLTQHKRVVVKDSCVNAICYGAKILIPGILRYDDDIEVGKEIVI 323
Query: 349 MTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAE 408
MTTKGEA+ + IA+M+T+ +A+ DHG+VA+ KRV+M+RD Y RKWGLGP AS KK+++ +
Sbjct: 324 MTTKGEAICIAIAQMSTSTIASVDHGIVAKSKRVIMERDVYGRKWGLGPVASKKKQMVKD 383
Query: 409 GKLDKHGKLNEKTPQEWARNVV 430
G LDK GK N TP+ WA+ V
Sbjct: 384 GLLDKFGKPNITTPKSWAKEYV 405
>sp|Q46GC3|TRUB_METBF Probable tRNA pseudouridine synthase B OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=truB PE=3 SV=1
Length = 338
Score = 288 bits (737), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 143/322 (44%), Positives = 214/322 (66%), Gaps = 5/322 (1%)
Query: 73 DRLNVR-TGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKT 131
+R+ VR +G +T G P KRP+++YI G++N+DKP P+SHEV AW+K IL V
Sbjct: 12 ERILVRKSGAWTNPSYGSYPEKRPILEYIEKGVVNIDKPKGPTSHEVAAWVKAILGVSTA 71
Query: 132 GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTG 191
GH+G+LDPKVTG L + +AT+ V + + +GKEYVC+ +LH ++P V + E TG
Sbjct: 72 GHAGSLDPKVTGLLPTLLGKATKAVPALRLSGKEYVCLLKLHKEMPQ-KLVRKVCEEFTG 130
Query: 192 AVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILG 251
++Q PP+ SAVKR +RIRTIY ++LE ++ V+F + CEAGTY+R +C +GL LG
Sbjct: 131 PIYQMPPIKSAVKRVIRIRTIYYLEVLE--IEGSFVLFRVGCEAGTYIRKLCHDIGLALG 188
Query: 252 VGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKR 311
GGHMQELRR ++G E + +VT+ D+ DA L+ DE+ +RRVIMP+E ++ +
Sbjct: 189 CGGHMQELRRTKAGPFTE-ETLVTLQDLKDAYVLWKEDGDESEIRRVIMPMETAVSHLPK 247
Query: 312 LVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATC 371
++++D+ V+AIC GA L +PG+ + +++ GE + L T KGE VAL AEM+T +
Sbjct: 248 IILRDSAVDAICSGAALAVPGITSLDANLKKGELIALFTLKGELVALAKAEMSTEELLKA 307
Query: 372 DHGVVARIKRVVMDRDTYPRKW 393
G+ A R++M+ TYP+ W
Sbjct: 308 STGLAATSVRIMMEIGTYPKGW 329
>sp|O59357|TRUB_PYRHO Probable tRNA pseudouridine synthase B OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=truB PE=3 SV=1
Length = 334
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 143/306 (46%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P +RP+ +I+YG+INLDKP P+SHEVVAWIKRIL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPYERPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-NKIIDVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGRDVLFKVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E YLRR I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEKYLRRAIQPMEKAVEHLPKIWIKDSAVAAVAHGAN 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LTVPGIVKLNVGIKRGDLVAIMTLKDELVALGKAMMTSQEMMQRSKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=truB PE=1 SV=1
Length = 334
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 143/306 (46%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I+YG+INLDKP P+SHEVVAWIKRIL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDVPE-DKIRAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y+R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVEHLPKIWIKDSAVAAVAHGAN 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A M+T M G+ +++V M RD
Sbjct: 269 LTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=truB PE=3 SV=1
Length = 338
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/311 (46%), Positives = 206/311 (66%), Gaps = 10/311 (3%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +RP+ +YI G+INLDKPA P+SHEVVAW+K I + K GH GTLDPKVTG L +
Sbjct: 30 GCPPEERPIEEYIMKGVINLDKPAGPTSHEVVAWVKEIFGLSKAGHGGTLDPKVTGVLPI 89
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++AT+++++ AGKEYV + LH V D ++ R ++ G + QRPPL SAVKR++
Sbjct: 90 ALEKATKIIQTLLPAGKEYVTIMHLHGDV-DEEELERVVKEFEGTILQRPPLRSAVKRRV 148
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R + IY +LE +D V+ + C+AGTY+R +C +G LGVG HM ELRR R+G
Sbjct: 149 RPKKIYYIDILE--IDGRDVLMRVGCQAGTYIRKLCHDIGEALGVGAHMAELRRTRTGPF 206
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAY---LRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
E +N VT+HDV DA Y+ +++E + LR V+ P+E L R+ ++DT V+AIC+
Sbjct: 207 SE-ENAVTLHDVKDA---YEFWKEEGWEEPLRHVVRPMEEGLEHLPRIEIRDTAVDAICH 262
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
GA L PG++R E I+ G+ V + T KGEAVALG+A+ T M D G++ KRV+M
Sbjct: 263 GANLAAPGIVRVEKGIQPGDLVAIFTLKGEAVALGVAKATWKEMLHADRGIMVDTKRVLM 322
Query: 385 DRDTYPRKWGL 395
+ TYP+ WGL
Sbjct: 323 EPGTYPKAWGL 333
>sp|Q7LWY0|TRUB_PYRFU Probable tRNA pseudouridine synthase B OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=truB
PE=1 SV=1
Length = 340
Score = 281 bits (720), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 203/306 (66%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 92 ALEKATRVVQALLPAGKEYVALMHLHGDVPE-DKIIQVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ ++T+HD++D + + E Y R+ I P+E + ++ +KD+ V A+ +GA
Sbjct: 209 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + I+ G+ V +MT K E VALG A MT+ M G+ +++V M RD
Sbjct: 269 LAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>sp|Q5JJE8|TRUB_PYRKO Probable tRNA pseudouridine synthase B OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=truB PE=3
SV=1
Length = 338
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 198/306 (64%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++GIINLDKP P+SHEVVAW+KRIL + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPIEMHIQFGIINLDKPPGPTSHEVVAWVKRILNLNKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH VP+ K+ + G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDVPE-DKILAVMREFQGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIDVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ ++D+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGVEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MTT M G+ + +V M RD
Sbjct: 269 LAVPGVVKLHKGIKKGDLVAIMTLKDELVALGKAMMTTGEMLQKSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>sp|B6YSP4|TRUB_THEON Probable tRNA pseudouridine synthase B OS=Thermococcus onnurineus
(strain NA1) GN=truB PE=3 SV=1
Length = 334
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 200/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ ++++GIINLDKP P+SHEVVAW+K++ + K GH GTLDPKV+G L V
Sbjct: 32 GFPPEKRPMEMHMQFGIINLDKPPGPTSHEVVAWVKKLFNLNKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH +VP+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGEVPE-DKIYAVMKEFEGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE +D V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEILE--IDGKDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ ++D+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ + +V M RD
Sbjct: 269 LAVPGIVKVHKGIKKGDLVAVMTLKDELVALGKATMTSGEMLQKSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YP+ W
Sbjct: 329 WYPKLW 334
>sp|C5A255|TRUB_THEGJ Probable tRNA pseudouridine synthase B OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=truB PE=3 SV=1
Length = 334
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 199/306 (65%), Gaps = 3/306 (0%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P +RP+ ++++GIINLDKP P+SHEVVAWIK++ + K GH GTLDPKV+G L V
Sbjct: 32 GFPPERRPMEMHMQFGIINLDKPPGPTSHEVVAWIKKLFNLSKAGHGGTLDPKVSGVLPV 91
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RATR+V++ AGKEYV + LH +P+ K+ ++ G + QRPPL SAVKR+L
Sbjct: 92 ALERATRVVQALLPAGKEYVALMHLHGDIPE-DKILAVMKEFQGEIIQRPPLRSAVKRRL 150
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE ++ V+F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 151 RTRKVYYIEVLE--IEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPF 208
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E++ +VT+HD++D + E Y R+ I P+E + ++ ++D+ V A+ +GA
Sbjct: 209 KEDETLVTLHDLVDYYHFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIRDSAVAAVTHGAD 268
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+++ I+ G+ V +MT K E VALG A MT+ M G+ + +V M RD
Sbjct: 269 LAVPGIVKLHKGIKKGDLVAIMTLKDELVALGKAMMTSGEMLQRSKGIAVDVDKVFMPRD 328
Query: 388 TYPRKW 393
YPR W
Sbjct: 329 WYPRMW 334
>sp|Q8TRR5|TRUB_METAC Probable tRNA pseudouridine synthase B OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=truB PE=3 SV=1
Length = 338
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 204/316 (64%), Gaps = 4/316 (1%)
Query: 78 RTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTL 137
++G +T G +P KRP+++YI G++N+DKP+ P+SHEV AW+K IL V GH+G+L
Sbjct: 18 KSGAWTNPVYGCAPEKRPILEYIEKGVVNIDKPSGPTSHEVAAWVKAILGVNTAGHAGSL 77
Query: 138 DPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRP 197
DPKVTG L + +AT+ V + + +GKEYVC +LH +P V + E TG ++Q P
Sbjct: 78 DPKVTGLLPTLLGKATKAVPALRLSGKEYVCHLKLHRAMPP-KLVRKVCEEFTGPIYQMP 136
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P+ SAVKR +R+RTIY ++LE ++ V+F + CEAGTY+R +C +GL LG GGHMQ
Sbjct: 137 PIKSAVKRVIRVRTIYYIEVLE--IEGMSVLFRVGCEAGTYIRKLCHDIGLALGCGGHMQ 194
Query: 258 ELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
LRR ++G E +VT+H++ DA + DE+ LRRVI P+E ++ +++++D+
Sbjct: 195 ALRRTKAGPFTEK-TLVTLHELKDAYVFWKEDGDESELRRVIRPMESAVSHLPKIILRDS 253
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
V+A+C GA L +PG+ ++ + GE L T KGE VAL AEM T + G+ A
Sbjct: 254 AVDAVCSGASLAVPGITSLDSSLAEGELAALFTLKGELVALAKAEMNTEEILKASAGIAA 313
Query: 378 RIKRVVMDRDTYPRKW 393
RV+M+ TYP+ W
Sbjct: 314 SPIRVLMEAGTYPKGW 329
>sp|O30001|TRUB_ARCFU Probable tRNA pseudouridine synthase B OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=truB PE=3 SV=1
Length = 325
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 143/308 (46%), Positives = 200/308 (64%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KRP+ +YIR G++ +DKP PSSHEVV W++RIL V KTGH+GTLDP+VTG L +
Sbjct: 19 GCYPTKRPMEEYIRKGLVCIDKPMGPSSHEVVVWVRRILNVSKTGHAGTLDPRVTGVLPI 78
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHD--KVPDVAKVARALEALTGAVFQRPPLISAVKR 205
I+ AT++VK Q + KEYVC+ RLH K DV KV ++ G ++QRPPL SAVK+
Sbjct: 79 FIENATKMVKFLQESSKEYVCLMRLHGDAKREDVEKV---MKLFVGRIYQRPPLKSAVKK 135
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
LRIR IYE +LLE ++ V+F + E+GTY+R +C +G +LG G HMQELRR R+G
Sbjct: 136 VLRIREIYEMELLE--MEGRDVLFRVVTESGTYIRKLCRDIGEVLGTGAHMQELRRTRTG 193
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
GE D T+ D++DA + +E YLR +I P+EV ++V+KD+ V+AIC+G
Sbjct: 194 KFGE-DMCYTLQDLLDAYVFWKEEGEEKYLREIIKPMEVAAAELPKIVIKDSAVDAICHG 252
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L + G+ E +++ V + T K E VA+G A M + G+ A I+RV+M+
Sbjct: 253 ANLSVRGVAYVEKNVKKDSTVAIFTLKNELVAIGRALMDAEDIYRLKKGIAADIQRVMME 312
Query: 386 RDTYPRKW 393
R YP+ W
Sbjct: 313 RGVYPKVW 320
>sp|Q8PV20|TRUB_METMA Probable tRNA pseudouridine synthase B OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=truB PE=3 SV=1
Length = 338
Score = 271 bits (694), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 202/316 (63%), Gaps = 4/316 (1%)
Query: 78 RTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTL 137
++G +T G P KRP+ +YI G++N+DKP P+SHEV AW+K IL V GH+G+L
Sbjct: 18 KSGAWTNPAYGCPPEKRPIHEYIEKGVVNIDKPRGPTSHEVAAWVKAILGVHTAGHAGSL 77
Query: 138 DPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRP 197
DPKVTG L + +AT V + + +GKEY+C +LH +P V + E TG ++Q P
Sbjct: 78 DPKVTGLLPTLLGKATLAVPALRLSGKEYICHLKLHRAMPQ-KLVRQVCEEFTGPIYQMP 136
Query: 198 PLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQ 257
P+ SAVKR +R+RTIY ++LE ++ V+F + CEAGTY+R +C +GL LG GGHMQ
Sbjct: 137 PIKSAVKRVIRVRTIYHLEVLE--IEGTSVLFRVGCEAGTYIRKLCHDIGLALGCGGHMQ 194
Query: 258 ELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDT 317
LRR ++G E ++T+H++ DA + DE+ LRRVI P+E ++ +++++D+
Sbjct: 195 GLRRTKAGPFTEK-TLITLHELKDAYVFWKEDGDESELRRVIRPMESAVSHLPKIILRDS 253
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
V+AIC GA L +PG+ ++++ GE L T KGE VAL A+MTT + G+ A
Sbjct: 254 AVDAICSGASLAVPGITGLDSNLAEGELTGLFTLKGELVALAKAKMTTEEILKASAGIAA 313
Query: 378 RIKRVVMDRDTYPRKW 393
RV+M+ TYPR W
Sbjct: 314 SPIRVLMEAGTYPRGW 329
>sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=truB PE=1 SV=1
Length = 336
Score = 271 bits (694), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 195/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G +P +R + D I+YG++ +DKP P+SHEV W+K+IL ++K GH GTLDPKVTG L V
Sbjct: 31 GCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPV 90
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++RAT+ + KEYVC+ LH + + R + TG ++QRPPL +AVKR+L
Sbjct: 91 ALERATKTIPMWHIPPKEYVCLMHLHRDASE-EDILRVFKEFTGRIYQRPPLKAAVKRRL 149
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR I+E +LL D D V+F + C++GTY+R +C +G LG HMQELRR +SG
Sbjct: 150 RIRKIHELELL--DKDGKDVLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCF 207
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D V + D++DA + DE LRRVI P+E L K++VVKD+ V+AIC+GA
Sbjct: 208 EEKDA-VYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGAD 266
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ + G+ + I GE V++ T KGEAVA+G A M T + D GV ++RV MDR
Sbjct: 267 VYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRG 326
Query: 388 TYPRKW 393
TYPR W
Sbjct: 327 TYPRMW 332
>sp|O26140|TRUB_METTH Probable tRNA pseudouridine synthase B OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=truB PE=3 SV=1
Length = 324
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 194/306 (63%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R + +I G++NLDKP+ P+SH+V +W++ +L VEK GH GTLDPKVTG L +
Sbjct: 22 GCPPAERDIEAHISMGVVNLDKPSGPTSHQVDSWVRDMLHVEKVGHGGTLDPKVTGVLPL 81
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
IDRATR+++ A KEYVC+ R+H +V D ++ L G +FQ PPL SAVKR L
Sbjct: 82 GIDRATRVMQLLLEAPKEYVCLMRVHREV-DEERIREVLGEFQGKIFQIPPLKSAVKRDL 140
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIY +LE VD V+F I+CEAGTYVR C +G LG G HM ELRR G
Sbjct: 141 RVRTIYRVDILE--VDGQDVLFRIACEAGTYVRKYCHDVGEALGAGAHMAELRRTAVGPF 198
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + +VT+HD+ DA + DE +LR I+P+E + R+V+ D+ V+AIC+GA
Sbjct: 199 TE-EGLVTLHDLKDAYQFWVEDGDETFLRECILPMEFAVGHLPRVVILDSAVDAICHGAD 257
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ +++I G+ V +MT KGE V +G A M+ +A D G+V ++V M+
Sbjct: 258 LARGGIAGLDDNIAWGDTVAIMTLKGELVGVGEASMSALDIAAADGGLVIETRKVFMEPG 317
Query: 388 TYPRKW 393
TYPR W
Sbjct: 318 TYPRMW 323
>sp|Q9YDC3|TRUB_AERPE Probable tRNA pseudouridine synthase B OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=truB PE=3 SV=2
Length = 354
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 194/309 (62%), Gaps = 8/309 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
GY P +RPL Y+RYG+I +DKP P+SHEVVAWIKR+L V + GH GTLDPKVTG L V
Sbjct: 42 GYLPHERPLDVYLRYGMIVVDKPPGPTSHEVVAWIKRMLGVSRAGHGGTLDPKVTGVLPV 101
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++R TR++ + + KEYVCV +LH V + ++ L+ G ++Q+PPL S+VKR L
Sbjct: 102 ALERMTRIIGTVMHSSKEYVCVMQLHRPVEE-DRLREVLKLFEGEIYQKPPLRSSVKRAL 160
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R ++ +LLEY L + CEAGTY+R +C +GL+LGVG HM+ELRR+R+G
Sbjct: 161 RTRRVFRIELLEYTGKYAL--LRVDCEAGTYMRKLCWDIGLVLGVGAHMRELRRIRTGPF 218
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEA---YLRRVIMPLEVLLTSYKRLVVKDTTVNAICY 324
E+ ++ D D + +R+E LRRV++P E + +++V+D+ V ++ +
Sbjct: 219 SEDSGLMVRLD--DVAYAVIRWREEGKDDLLRRVVIPGEYSVCHIPKVLVRDSAVESLTH 276
Query: 325 GAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
GA+L PG+ E +E G V LMT KGE + LG A + M + G+V R++M
Sbjct: 277 GAQLAAPGVAAVEEGVEKGGMVALMTLKGELIGLGKALASAQEMLEAERGIVVSPTRIIM 336
Query: 385 DRDTYPRKW 393
+R YPR W
Sbjct: 337 ERGLYPRMW 345
>sp|Q975L5|TRUB_SULTO Probable tRNA pseudouridine synthase B OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=truB
PE=3 SV=2
Length = 337
Score = 259 bits (662), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 213/347 (61%), Gaps = 19/347 (5%)
Query: 48 DFIIKPQSFTPSIDTSQWPILLKNY-DRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
DFI K SF NY + N+ YT GY KRP+ I+ IIN
Sbjct: 5 DFIYKIDSFC-------------NYSNNWNIIQDSYTNEKYGYFADKRPIEVLIKNSIIN 51
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
DKP P+SHEV WIK++ +V K GH GTLDPKVTG L + ++ AT+L+ +GKEY
Sbjct: 52 ADKPPGPTSHEVAYWIKQMFKVSKAGHGGTLDPKVTGVLPIGLENATKLMSYISSSGKEY 111
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ ++H ++ ++ + + G ++Q+PP+ S+VKR+ R + IY+ ++L D D+
Sbjct: 112 VCLMQVHCDF-NIDELKQIISKFIGIIYQKPPVRSSVKRRTRKKKIYDIEIL--DTDKRF 168
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
++ IS + GTY+R +C +G+ILG G HM+ELRR+RSGI E N+VT+ ++ +A +++
Sbjct: 169 ILLRISSDPGTYMRKLCHDIGVILGCGAHMRELRRIRSGIFTEK-NLVTLQEISEALYMW 227
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
N +DE+ LR++++P+E ++++ D V+AI YGA L PG++ ++ V + V
Sbjct: 228 KNCKDESDLRKILLPMEYATCGMPKILIDDNAVDAISYGAMLTAPGIVAYQR-FRVKDTV 286
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393
++T KGE VA+G A++ + + G+V + KRV+M RD YPR W
Sbjct: 287 AILTLKGELVAIGEADVDSQKLVDMKKGIVVKPKRVLMPRDIYPRSW 333
>sp|A3MS77|TRUB_PYRCJ Probable tRNA pseudouridine synthase B OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=truB PE=3 SV=1
Length = 333
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R ++IRY + LDKP P+SHEV AW+K+IL VE+ GHSGTLDPKV+G L V
Sbjct: 21 GKPPSSRSAEEHIRYSFLILDKPRGPTSHEVAAWVKKILGVERAGHSGTLDPKVSGVLPV 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + A K Y+ VA+ H V DV + R L+ L G ++Q+PPL SAVKRQL
Sbjct: 81 AVAEGTKVLMALSRADKVYIAVAKFHGDV-DVENLRRVLQELQGEIYQKPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LLE +D V + EAGTY R + LG ILGVG +M+ELRRV
Sbjct: 140 RTRRVYSLELLE--LDGRYAVLKMHVEAGTYARKLIHDLGEILGVGANMRELRRVAVSCF 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ D+ DA +++ Y D+ YLRRV++P+E + ++ V+D+ V+A+C GA
Sbjct: 198 TE-DEAVTLQDLADAYYIWKKYGDDTYLRRVLLPIEEIARPLPKIWVRDSAVDALCNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE+ G+ V T KGE + +G A + + + + G+VAR RVVM R
Sbjct: 257 LAAPGVAKFEHPFSRGDLVAYFTLKGELIGIGRALVDSEEVKKMEKGLVARTDRVVMPRG 316
Query: 388 TYPRKW 393
TYP W
Sbjct: 317 TYPPMW 322
>sp|B1L793|TRUB_KORCO Probable tRNA pseudouridine synthase B OS=Korarchaeum cryptofilum
(strain OPF8) GN=truB PE=3 SV=1
Length = 325
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 196/319 (61%), Gaps = 11/319 (3%)
Query: 82 YTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVE-KTGHSGTLDPK 140
Y P P GY P +RP+ Y+ +G+I LDKP PSSHEV +KRIL K GH GTLDPK
Sbjct: 14 YEPGPYGYRPQERPIFLYLDHGLIILDKPKGPSSHEVTERVKRILEYPGKVGHCGTLDPK 73
Query: 141 VTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLI 200
V+G L + + AT+L K G KEYV LH VP + ++ AL+ TG +FQRPP+
Sbjct: 74 VSGVLPIVLGNATKLSKFISGYDKEYVGTLYLHGDVP-IDELKGALDKFTGPIFQRPPVK 132
Query: 201 SAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELR 260
SAVKR LR+R +Y +LL + H + + E+GTY+R + +G LGVGG M++LR
Sbjct: 133 SAVKRSLRVRRVYSIELLSSEGRFHKL--RVRVESGTYIRKLFFDIGEFLGVGGSMRDLR 190
Query: 261 RVRSGILGENDNMVTMHDVMDAQWLYDNYR---DEAYLRRVIMPLEVLLTSYKRLVVKDT 317
R+RSGI E D VT+ D+ DA YD++R DE+ +R+VI+PLE + ++ VKD+
Sbjct: 191 RIRSGIFTEKD-CVTLEDIKDA---YDSWRESGDESKIRKVILPLEEAVRHLPKIYVKDS 246
Query: 318 TVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVA 377
V ++ +GA L + G+ I+ G V LMT KGE +A+G A M M + D GV A
Sbjct: 247 AVASLTHGASLKVKGICSLSRGIKKGSIVALMTLKGELIAIGRALMDFDEMLSADSGVAA 306
Query: 378 RIKRVVMDRDTYPRKWGLG 396
I+RV+M RD YP W G
Sbjct: 307 SIERVIMPRDLYPPMWKTG 325
>sp|Q8ZYB3|TRUB_PYRAE Probable tRNA pseudouridine synthase B OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=truB PE=3 SV=1
Length = 333
Score = 252 bits (643), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R +YI+Y ++ LDKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSQRSTEEYIKYSLVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I T+++ + + K YV VA+ H V D K+ L+ G ++Q+PPL SAVKRQL
Sbjct: 81 AIAEGTKVLMALSRSDKVYVAVAKFHGDV-DEDKLRAVLQEFQGVIYQKPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y LLE +D V + EAGTY R + +G +LGVG +M+ELRR+
Sbjct: 140 RTRRVYSLDLLE--LDGRYAVIKMHVEAGTYARKIIHDIGEVLGVGANMRELRRIAVSCY 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ D+ DA +++ +Y D+ YLRRV++P+E + ++ V+D+ V+AIC GA
Sbjct: 198 TE-DEAVTLQDIADAYYIWKHYGDDTYLRRVLLPIEEIARHLPKIWVRDSAVDAICNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE G+ V + T KGE + +G A + + + + G+VAR RVVM R
Sbjct: 257 LAAPGISKFETPFSKGDLVAMFTLKGELIGIGRALVGSEEVKKMERGLVARTDRVVMRRG 316
Query: 388 TYPRKW 393
TYP W
Sbjct: 317 TYPAMW 322
>sp|B1YA64|TRUB_PYRNV Probable tRNA pseudouridine synthase B OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=truB PE=3 SV=1
Length = 331
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R ++I+Y ++ LDKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSRRSAEEHIKYSLVLLDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + + K YV VA+ H V D K+ L G ++QRPPL SAVKRQL
Sbjct: 81 AVAEGTKVLLALSRSDKVYVAVAKFHGDV-DEGKLRAVLGEFQGIIYQRPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LLE D R+ V+ + EAGTY R + +G +LGVG +M+ELRRV
Sbjct: 140 RTRQVYSIELLELD-GRYAVIK-MHVEAGTYARKLIHDIGEVLGVGANMRELRRVAVSCY 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E + VT+ DV DA +++ Y D+ YLRRV++P+E + ++ V+D+ V+A+C GA
Sbjct: 198 TEEET-VTLQDVADAYYIWRKYGDDTYLRRVLLPIEEIARHLPKIWVRDSAVDALCNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE GE V T KGE + +G A + + + + G+VAR RVVM R
Sbjct: 257 LAAPGVAKFEAPFSRGELVAYFTLKGELIGVGRALVDSEEVKKMEKGLVARTDRVVMKRG 316
Query: 388 TYPRKW 393
TYP W
Sbjct: 317 TYPPLW 322
>sp|A1RTL7|TRUB_PYRIL Probable tRNA pseudouridine synthase B OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=truB PE=3 SV=1
Length = 328
Score = 246 bits (627), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 185/306 (60%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR +YIRY ++ +DKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSKRTTEEYIRYSLVLIDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+ + + + K YV VA+ H V D K+ L G ++Q+PPL S+VKRQL
Sbjct: 81 AVAEGTKALLALSRSDKVYVAVAKFHGDV-DEEKLKAVLNEFQGVIYQKPPLRSSVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y +LLE +D V + EAGTY R + +G +LGVG +M+ELRR+
Sbjct: 140 RTRHVYSLELLE--LDGRYAVIKMHVEAGTYARKLIHDIGEVLGVGANMRELRRIAVSCY 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D V + DV DA +++ Y D+ YLRRV++P+E + ++ V+D+ V+A+C GA
Sbjct: 198 TE-DETVALQDVADAYYIWRRYGDDTYLRRVLLPIEEIARHLPKIWVRDSAVDALCNGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+++FE GE V T K E + G A + + + G+VAR+ RV+M R
Sbjct: 257 LAAPGVVKFETPFSKGELVAFFTLKDELIGFGRALVESEEAKKMERGLVARVDRVIMRRG 316
Query: 388 TYPRKW 393
TYP W
Sbjct: 317 TYPPMW 322
>sp|A4WH37|TRUB_PYRAR Probable tRNA pseudouridine synthase B OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=truB PE=3 SV=1
Length = 331
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 192/313 (61%), Gaps = 4/313 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P +R +YIR+ + LDKP PSSHEV AW+K+IL VE+ GH+GTLDPKV+G L +
Sbjct: 21 GKPPSQRTADEYIRHSFVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPI 80
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+++ + + K YV VA+ H V D ++ L G ++Q+PPL SAVKRQL
Sbjct: 81 AVAEGTKVLMALSRSDKVYVAVAKFHGDV-DEERLRAVLREFQGEIYQKPPLRSAVKRQL 139
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R ++ +LLE + R+ V+ + EAGTY R + +G +LGVG +M+ELRRV
Sbjct: 140 RTRRVFSLELLELE-GRYAVIK-MHVEAGTYARKIIHDIGEVLGVGANMRELRRVAVTCF 197
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D VT+ DV DA +++ Y D+ YLR V++P+E + ++ V+D+ V+A+C+GA
Sbjct: 198 TE-DEAVTLQDVADAYYIWKKYGDDTYLRSVLLPIEEIARHLPKIWVRDSAVDAVCHGAP 256
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L PG+ +FE G+ V + T KGE V +G A + + + + G V R RVVM R
Sbjct: 257 LAAPGISKFEVPFSKGDIVAMFTLKGELVGIGRALVDSEEVKKMERGAVVRTDRVVMRRG 316
Query: 388 TYPRKWGLGPRAS 400
TYP W G RA+
Sbjct: 317 TYPAMWKKGQRAA 329
>sp|A6VHV2|TRUB_METM7 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=truB PE=3 SV=1
Length = 333
Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYKRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHD--KVPDVAKVARALEALTGAVFQRPPLISAVKR 205
+ T+ V KEYVC+ LHD K+ D+ + + TG + QRPPL +AVKR
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDAKLEDIENI---FKEFTGRIHQRPPLKAAVKR 132
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
LRIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 133 SLRIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISG 190
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
EN+ V + D++DA + +E LR+++ PLE L K+++VKD+ V+A+C+G
Sbjct: 191 PFYENE-AVYLQDLLDAYIFWKEDGNEEELRKLVKPLEYGLQHLKKIIVKDSAVDAVCHG 249
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L G+ + E I E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 250 ATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIME 309
Query: 386 RDTYPRKW 393
YPR W
Sbjct: 310 PGIYPRIW 317
>sp|A4G0N3|TRUB_METM5 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=truB PE=3 SV=1
Length = 333
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 183/308 (59%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHD--KVPDVAKVARALEALTGAVFQRPPLISAVKR 205
+ T+ V KEYVC+ LHD KV D+ + + TG + QRPPL +AVKR
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDAKVEDIENI---FKEFTGRIHQRPPLKAAVKR 132
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
LRIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 133 SLRIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISG 190
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
EN+ V + D++DA + +E LR+++ PLE L K+++VKD+ V+A+C+G
Sbjct: 191 PFYENE-AVYLQDLLDAYIFWKEDGNEEELRKLVKPLEYGLQHLKKIIVKDSAVDAVCHG 249
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L G+ + E I E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 250 ATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIME 309
Query: 386 RDTYPRKW 393
YPR W
Sbjct: 310 PGIYPRIW 317
>sp|A9A8X7|TRUB_METM6 Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=truB PE=3 SV=1
Length = 333
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 184/308 (59%), Gaps = 8/308 (2%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KR + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYKRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHD--KVPDVAKVARALEALTGAVFQRPPLISAVKR 205
+ T+ V KEYVC+ LHD K+ D+ + + TG + QRPPL +AVKR
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDAKLEDIENI---FKEFTGRIHQRPPLKAAVKR 132
Query: 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
LRIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 133 SLRIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISG 190
Query: 266 ILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYG 325
EN+ V + D++DA + +E LR+++ PLE L K+++VKD+ V+A+C+G
Sbjct: 191 PFYENE-AVYLQDLLDAYISWKEDGNEEELRKLVKPLEYGLQHLKKIIVKDSAVDAVCHG 249
Query: 326 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
A L G+ + E I E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 250 ATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIME 309
Query: 386 RDTYPRKW 393
YPR W
Sbjct: 310 PGIYPRIW 317
>sp|Q6LWM3|TRUB_METMP Probable tRNA pseudouridine synthase B OS=Methanococcus maripaludis
(strain S2 / LL) GN=truB PE=3 SV=1
Length = 333
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P R + + G++ +DKP+ P+SHEV AW++ +L + K GH GTLDPKVTG L V
Sbjct: 16 GSDPYNRDIKTLLNTGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ T+ V KEYVC+ LHD ++ + + TG + QRPPL +AVKR L
Sbjct: 76 ALGNTTKCVPIWHIPPKEYVCLMHLHDDA-ELVDIENIFKEFTGRIHQRPPLKAAVKRSL 134
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IYE ++LE +D ++F C++GTY+R + +G LG HMQELRR SG
Sbjct: 135 RIRKIYEIEILE--IDGRDILFRTKCQSGTYLRKLVDDMGEALGTSAHMQELRRTISGPF 192
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
EN+ V + D++DA + +E LR+++ PLE L K++++KD+ V+A+C+GA
Sbjct: 193 YENE-AVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKKIIIKDSAVDAVCHGAT 251
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L G+ + E + E V++ T KGEAVA+G M T M + G V I RV+M+
Sbjct: 252 LYSSGISKIEKGLGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTEEGEVVEITRVIMEPG 311
Query: 388 TYPRKW 393
YPR W
Sbjct: 312 IYPRIW 317
>sp|A6UWC6|TRUB_META3 Probable tRNA pseudouridine synthase B OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=truB PE=3 SV=1
Length = 331
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 186/316 (58%), Gaps = 14/316 (4%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P RP+ + ++ GI+ +DKP+ P+SHEV AW++ IL+++ GH GTLDPKVTG L V
Sbjct: 16 GCDPYNRPIGELLKNGIVVIDKPSGPTSHEVSAWVRDILKLKLAGHGGTLDPKVTGVLPV 75
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
++ ++ + KEYVC+ LH + ++ + + TG +FQRPPL +AVKR L
Sbjct: 76 ALENTSKCISVWHMIPKEYVCLMHLHRDTEE-EELLKIFKKFTGRIFQRPPLKAAVKRSL 134
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
RIR IYE +LLE D V+F + C++GTY+RT+ +G LG HMQELRR+ SG
Sbjct: 135 RIRKIYELELLEKDGRD--VLFRVRCQSGTYIRTLAEDMGEALGTSAHMQELRRIVSGPF 192
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D +V + D+ DA + DE LR++I P+E L +++VKD+ V+AIC+GA
Sbjct: 193 TEKD-IVYLQDLTDAYIFWKENGDETELRKIIKPMEYGLQHINKIIVKDSAVDAICHGAN 251
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHG----------VVA 377
+ + G+ + I E V++ T KGEA+ +G A + T + +
Sbjct: 252 VYLNGVSKLSKGIGADETVLIETLKGEAIGIGTALLNTKNVLKESKNEEDNREKYKEPIV 311
Query: 378 RIKRVVMDRDTYPRKW 393
I+R+ M +TYP+ W
Sbjct: 312 DIERIFMSPNTYPKMW 327
>sp|P60346|TRUB_NANEQ Probable tRNA pseudouridine synthase B OS=Nanoarchaeum equitans
(strain Kin4-M) GN=truB PE=3 SV=1
Length = 348
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 5/306 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P RP+ ++Y +INLDKP+ P+SH+VVAW++ I+ V K GH GTLDPKVTG L +
Sbjct: 44 GEDPYNRPIERLLKYSVINLDKPSGPTSHQVVAWVRDIVGV-KAGHGGTLDPKVTGVLPI 102
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
I AT+++++ AGKEYV + LH +V + + + + G + Q PPL SAVK++
Sbjct: 103 AIGEATKVLQTLLIAGKEYVALMHLHKEVSE-KDIIKVMSKFVGTIIQTPPLRSAVKKRP 161
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R + +Y K++E +D V+F +S + G Y+R + +G+ LGVG HMQELRR++SG
Sbjct: 162 RKKKVYCIKIIE--IDGKDVLFRVSTQGGVYIRKLIHDIGVKLGVGAHMQELRRIKSGPF 219
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
EN N V + D++D+ + + +E Y+R+V +P+E + K++ + D+ V AI +GA
Sbjct: 220 HEN-NSVYLQDIVDSLYFWKEEGNEEYIRKVFLPVEEAVKHLKKIYILDSAVAAIVHGAN 278
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
L +PG+ + ++I+ G+ V + T KGE VA+GIA M + M G+ I+RV M
Sbjct: 279 LAVPGIAKLYSNIKKGDLVSIHTLKGELVAIGIALMDSKEMLEKKRGIAVDIERVFMKPG 338
Query: 388 TYPRKW 393
YP+ W
Sbjct: 339 LYPKMW 344
>sp|Q980C3|TRUB_SULSO Probable tRNA pseudouridine synthase B OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=truB
PE=3 SV=1
Length = 251
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 165/245 (67%), Gaps = 4/245 (1%)
Query: 149 IDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLR 208
I+ AT+++ GKEYVCV ++H + + ++A+ + + G ++QRPP+ S+VKR+LR
Sbjct: 6 IENATKIMNYISKGGKEYVCVMQVHCEY-NKEELAKIISSFKGEIYQRPPVRSSVKRRLR 64
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
IR IY+ ++L D+D+ LV+ ++C++GTY+R +C +G+I G G HM+ELRR RSGI
Sbjct: 65 IRRIYDIEIL--DMDKKLVLLRVNCDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIFT 122
Query: 269 ENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
E+ N+V +H++ +A +LY N +DE LRRV++P+E ++V++D+ VNA+ YGA+L
Sbjct: 123 ESTNLVKLHELSEAIYLYKNCKDETELRRVLIPMEFATCEIPKIVIEDSAVNALAYGAQL 182
Query: 329 MIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388
+PG++ ++N + + V ++T KGE VA G A M + + G+V + RV M RD
Sbjct: 183 AVPGVVAYQN-FKKNDTVAVLTLKGELVATGNALMDSEELENAKKGIVVNLSRVFMQRDI 241
Query: 389 YPRKW 393
YP+ W
Sbjct: 242 YPKAW 246
>sp|Q9HPA4|TRUB_HALSA Probable tRNA pseudouridine synthase B OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=truB PE=3
SV=1
Length = 301
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 161/297 (54%), Gaps = 23/297 (7%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+ +G++NLDKP PS+H+V AWI+ ++ VEK H+GTLDPKVTG L V ATR+ +
Sbjct: 16 LSFGVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTGTATRIAPAL 75
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
KEYV V LHD P + + +EA TG ++Q+PP SAV R+LR RT+Y+ +L
Sbjct: 76 LEGFKEYVAVLELHDDPPRI--LPDVIEAFTGEIYQKPPKKSAVARRLRTRTVYDLDVL- 132
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
DVD V+ I CE+GTY+R +C +G LG HM LRR + + D +VT+HD+
Sbjct: 133 -DVDGRQVLLRIRCESGTYIRKLCHDIGRALGTNAHMGHLRRSATTPFDDTD-LVTLHDL 190
Query: 280 MDA-QWLYDNYRDEA------YLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
DA WL D E LR + P E LT RL + D+ + + GA + PG
Sbjct: 191 ADAVAWLRDTDDTEPPDAPADALRAAVQPAERALTHLPRLTIADSAAHEVATGAPVYAPG 250
Query: 333 LL---RFENDIEVGEEVVLMTTKGEAVALG--IAEMTTAVMATCDHGVVARIKRVVM 384
++ G V T G AV LG + + D GVV ++RV++
Sbjct: 251 VIDTTALPTPPADGALVACYTAGGTAVCLGRLVGD------PDADAGVVVALERVLV 301
>sp|B0R686|TRUB_HALS3 Probable tRNA pseudouridine synthase B OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=truB PE=3 SV=1
Length = 301
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 161/297 (54%), Gaps = 23/297 (7%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+ +G++NLDKP PS+H+V AWI+ ++ VEK H+GTLDPKVTG L V ATR+ +
Sbjct: 16 LSFGVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTGTATRIAPAL 75
Query: 160 QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE 219
KEYV V LHD P + + +EA TG ++Q+PP SAV R+LR RT+Y+ +L
Sbjct: 76 LEGFKEYVAVLELHDDPPRI--LPDVIEAFTGEIYQKPPKKSAVARRLRTRTVYDLDVL- 132
Query: 220 YDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
DVD V+ I CE+GTY+R +C +G LG HM LRR + + D +VT+HD+
Sbjct: 133 -DVDGRQVLLRIRCESGTYIRKLCHDIGRALGTNAHMGHLRRSATTPFDDTD-LVTLHDL 190
Query: 280 MDA-QWLYDNYRDEA------YLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPG 332
DA WL D E LR + P E LT RL + D+ + + GA + PG
Sbjct: 191 ADAVAWLRDTDDTEPPDAPADALRAAVQPAERALTHLPRLTIADSAAHEVATGAPVYAPG 250
Query: 333 LL---RFENDIEVGEEVVLMTTKGEAVALG--IAEMTTAVMATCDHGVVARIKRVVM 384
++ G V T G AV LG + + D GVV ++RV++
Sbjct: 251 VIDTTALPTPPADGALVACYTAGGTAVCLGRLVGD------PDADAGVVVALERVLV 301
>sp|Q6L1A0|TRUB_PICTO Probable tRNA pseudouridine synthase B OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=truB PE=3 SV=1
Length = 349
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 151/257 (58%), Gaps = 5/257 (1%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G I +DKP P+SH++ +WI+ I + GH GTLDP V+G L++ + +AT+L+
Sbjct: 6 GFIVVDKPKGPTSHQIDSWIRDITGEPRVGHIGTLDPGVSGVLVMALGKATKLIDIVHRE 65
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYV V R +DK D + + TG ++Q PP+ SAV R+LRIR IY +LLE +
Sbjct: 66 SKEYVSVLRTYDKY-DHDSIKSVFKEFTGKIYQIPPVRSAVSRELRIREIYNLELLE--M 122
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
D V+F + CE+GTY+RT+C +G +LG GG M ELRR R+G E+ T+ +V DA
Sbjct: 123 DEKFVLFKVCCESGTYIRTLCTDIGYVLGSGGQMAELRRTRTGPFDES-MCHTLQEVSDA 181
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L + +E + + +P++ + Y +++VK+T + I +G+ + G+ +
Sbjct: 182 FKL-KSMGNEKLFKNIFIPMDFIFIKYPKVIVKETALKNIAHGSDIYPAGIHAITGSPKK 240
Query: 343 GEEVVLMTTKGEAVALG 359
G+ V + T K E VA G
Sbjct: 241 GDVVAVYTEKNELVATG 257
>sp|Q5UXH1|TRUB_HALMA Probable tRNA pseudouridine synthase B OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=truB PE=3 SV=1
Length = 314
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 165/297 (55%), Gaps = 21/297 (7%)
Query: 97 VDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRL 155
+D +R +G++NLDKP PS+H+V AWI+ ++ H GTLDPKVTG L V + A R+
Sbjct: 30 LDSLRSFGVVNLDKPPGPSAHQVAAWIRDATGQDRVAHGGTLDPKVTGCLPVLLGDAARM 89
Query: 156 VKSQQGAGKEYVCVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYE 214
+ A KEYV V LHD+ P D+A + E ++Q+PP SAVKRQLR R I+
Sbjct: 90 AQVFDNAVKEYVTVLELHDQAPADIADIVAEFET---DIYQKPPRKSAVKRQLRSRRIHS 146
Query: 215 SKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMV 274
+LE DR L + + C +GTY+R +C +GL G G HM +LRR +G ++ ++
Sbjct: 147 LDILEQG-DRRL-LLRVRCASGTYIRKLCHDIGLAAGTGAHMGDLRRTATGTF-DDGSLS 203
Query: 275 TMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLL 334
TMHD++DA + DEA LR +I P E L+ R+ + + + GA + PG++
Sbjct: 204 TMHDLVDA-LAFAADGDEAQLREIIQPAERALSHLPRVTIAPSAAREVAEGAPVYAPGVI 262
Query: 335 RFENDIEVGE-------EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
EVG+ +VV +T G AV LG T D G+V + R+++
Sbjct: 263 E-TGPAEVGDATPEIDSQVVSVTPDGAAVCLG----TLVSDPDADSGLVVELDRMLV 314
>sp|Q97BU9|TRUB_THEVO Probable tRNA pseudouridine synthase B OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=truB PE=3 SV=1
Length = 353
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 151/264 (57%), Gaps = 5/264 (1%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G I +DKP P+SH+V W+++IL EK GH GTLDP VTG L++ I +A RL+
Sbjct: 10 GFIVIDKPQGPTSHQVDYWVRQILGTEKVGHIGTLDPNVTGVLVMAIGKAVRLIDVVHEK 69
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYV V R H + + +V T ++Q PP+ SAV R++RI+TIYE ++E
Sbjct: 70 PKEYVGVMRFHSDISE-EEVREVFRKFTTRIYQLPPVRSAVSRKVRIKTIYELDMIEKK- 127
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
D+ +V+F + CE+GTY+RT+C +G + G GG M +LRR+ +G E D +T+ D+
Sbjct: 128 DK-IVLFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRISTGPFKE-DIAITLQDLQAY 185
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L +DE + R + + Y ++V K + V I +G+ L + G+ + + +
Sbjct: 186 VDLAKEGKDELF-RSHFLDMTYAFIDYPKIVAKKSAVENIAHGSDLYVGGVKLIDGNFQK 244
Query: 343 GEEVVLMTTKGEAVALGIAEMTTA 366
G+ V +++ E + GIA ++
Sbjct: 245 GDRVCVLSEDNELLGTGIARCDSS 268
>sp|Q9HIT4|TRUB_THEAC Probable tRNA pseudouridine synthase B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=truB PE=3 SV=2
Length = 365
Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 147/263 (55%), Gaps = 5/263 (1%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G + LDKP P+SH+V W++ IL +EK H GTLDP VTG L + I +A RLV +
Sbjct: 8 GFVVLDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDVVHES 67
Query: 163 GKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222
KEYV V R ++ + + +V + TG ++Q PP+ SAV R LRI+T+Y LLE
Sbjct: 68 PKEYVGVMRFYEDITE-EEVRYYFKKFTGRIYQLPPVRSAVARSLRIKTVYSLDLLEKK- 125
Query: 223 DRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDA 282
DR LV+F + CE+GTY+RT+C +G + G GG M +LRR +G E D +T+ D
Sbjct: 126 DR-LVLFHVKCESGTYIRTLCTDIGYVSGKGGQMVDLRRTSTGPFSE-DRCITLQDFAAM 183
Query: 283 QWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEV 342
L D+ LR I+ + Y ++VVK + + I +G+ L G+ +
Sbjct: 184 VELARKGEDKL-LRDHILDMTYAFKDYPKIVVKRSAMRNIAHGSDLYAGGIKIIDGKFRK 242
Query: 343 GEEVVLMTTKGEAVALGIAEMTT 365
GE V +++ + V GIA ++
Sbjct: 243 GERVAVISEDNDLVGTGIAMCSS 265
>sp|A5D2S3|TRUB_PELTS tRNA pseudouridine synthase B OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=truB PE=3 SV=1
Length = 316
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 140/297 (47%), Gaps = 48/297 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+N+ KP SSH+VV I+RI V+K GH+GTLDP G L+VC+ ATRL + G
Sbjct: 3 GIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLLGE 62
Query: 163 GKEY---------VCVARLHDKVPDV--------AKVARALEALTGAVFQRPPLISAVK- 204
KEY + ++ D + R L TG V Q PP+ SA+K
Sbjct: 63 DKEYRVEITFGMSTSTGDSYGEITDQRDASFLKEHDIIRVLPEFTGEVRQVPPMTSAIKW 122
Query: 205 -------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVH 245
R + I+++ + + + +SC GTYVR++C
Sbjct: 123 RGKKLYELAREGLVVERQERAVYIKSLEFIRGSGWGTPSPRALMHLSCSKGTYVRSLCHD 182
Query: 246 LGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVL 305
+G LG G HM L R R+G D+ VT+ ++ A + L R I+ ++
Sbjct: 183 MGSRLGCGAHMSFLVRTRAGPFKIADS-VTLEELQAAA-------SKGVLERKIIEMDRA 234
Query: 306 LTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362
++ Y ++VK + V A+ G+KL IPG+ R D++ G+ V L G L IAE
Sbjct: 235 VSEYPEVIVKSSAVKAVAAGSKLYIPGVARMPLDLDCGKLVRLTGPDG---LLAIAE 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 231,952,931
Number of Sequences: 539616
Number of extensions: 10906693
Number of successful extensions: 178811
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2547
Number of HSP's successfully gapped in prelim test: 3933
Number of HSP's that attempted gapping in prelim test: 73792
Number of HSP's gapped (non-prelim): 47593
length of query: 602
length of database: 191,569,459
effective HSP length: 123
effective length of query: 479
effective length of database: 125,196,691
effective search space: 59969214989
effective search space used: 59969214989
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)