Query 007467
Match_columns 602
No_of_seqs 329 out of 1592
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 02:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u28_A H/ACA ribonucleoprotein 100.0 2E-128 5E-133 1019.2 30.5 390 46-435 3-392 (400)
2 2apo_A Probable tRNA pseudouri 100.0 3.3E-93 1.1E-97 743.3 31.0 318 74-395 38-355 (357)
3 2aus_C Pseudouridine synthase; 100.0 1.2E-90 4E-95 718.7 31.7 317 74-393 17-334 (334)
4 1r3e_A TRNA pseudouridine synt 100.0 2.4E-71 8.2E-76 569.0 25.0 247 100-361 1-280 (309)
5 1k8w_A TRNA pseudouridine synt 100.0 1.1E-70 3.9E-75 567.6 29.2 264 101-385 24-324 (327)
6 1sgv_A TRNA pseudouridine synt 100.0 9.7E-70 3.3E-74 558.4 27.0 250 101-384 5-291 (316)
7 3zv0_C H/ACA ribonucleoprotein 100.0 6.5E-44 2.2E-48 345.6 12.0 130 300-429 66-195 (195)
8 2v9k_A Uncharacterized protein 99.7 2.9E-16 9.9E-21 171.1 12.6 144 104-264 358-520 (530)
9 3r90_A Malignant T cell-amplif 99.1 1.7E-11 5.8E-16 118.2 3.6 85 309-398 92-180 (188)
10 1q7h_A Conserved hypothetical 98.7 6E-09 2.1E-13 96.2 5.1 84 309-397 70-153 (153)
11 3d79_A PUA domain, putative un 98.7 1.5E-08 5E-13 96.6 6.6 73 310-382 95-168 (179)
12 2cx0_A Hypothetical protein AP 98.5 7.5E-08 2.6E-12 92.5 6.3 71 309-379 91-167 (187)
13 2q07_A Uncharacterized protein 98.4 7E-08 2.4E-12 99.3 3.6 70 310-386 231-300 (306)
14 1iq8_A Archaeosine tRNA-guanin 98.4 2.2E-07 7.5E-12 102.8 6.4 73 310-382 508-580 (582)
15 3dh3_A Ribosomal large subunit 98.4 5.1E-07 1.7E-11 92.1 8.2 142 100-271 65-215 (290)
16 2p38_A Protein involved in rib 97.6 8.3E-05 2.9E-09 70.6 6.4 69 311-391 97-165 (166)
17 2gml_A Ribosomal large subunit 97.5 0.0001 3.5E-09 73.5 5.4 138 103-270 15-161 (237)
18 1v9k_A Ribosomal large subunit 97.4 6.6E-05 2.3E-09 73.2 3.0 73 99-171 6-90 (228)
19 1sqw_A Saccharomyces cerevisia 97.1 0.00063 2.2E-08 66.0 6.4 79 310-391 95-174 (188)
20 1vio_A Ribosomal small subunit 96.7 0.0003 1E-08 69.1 0.3 144 100-271 59-214 (243)
21 1ksk_A Ribosomal small subunit 96.5 0.00036 1.2E-08 68.0 -0.2 142 101-270 62-214 (234)
22 2oml_A Ribosomal large subunit 96.5 0.00046 1.6E-08 65.3 0.5 156 99-270 8-177 (189)
23 2i82_A Ribosomal large subunit 96.5 0.0011 3.8E-08 64.1 2.9 71 99-171 16-99 (217)
24 2j5v_A Glutamate 5-kinase; pro 96.4 0.0018 6.3E-08 67.8 4.3 62 309-370 275-337 (367)
25 1v9f_A Ribosomal large subunit 96.3 0.0023 7.9E-08 65.5 4.0 73 99-171 87-175 (325)
26 2olw_A Ribosomal large subunit 96.2 0.00094 3.2E-08 65.0 0.5 69 99-171 36-114 (217)
27 3c0k_A UPF0064 protein YCCW; P 55.2 8.2 0.00028 39.7 3.9 54 310-363 3-57 (396)
28 2as0_A Hypothetical protein PH 51.3 18 0.00063 37.0 5.7 55 310-364 2-57 (396)
29 2frx_A Hypothetical protein YE 49.8 19 0.00064 38.8 5.7 58 309-393 411-468 (479)
30 3m4x_A NOL1/NOP2/SUN family pr 39.8 39 0.0013 36.3 6.2 57 310-395 399-455 (456)
31 2hq7_A Protein, related to gen 33.8 12 0.0004 32.4 0.8 81 112-192 1-106 (146)
32 3dmb_A Putative general stress 33.0 48 0.0016 29.4 4.8 81 114-194 4-109 (147)
33 4dmg_A Putative uncharacterize 29.2 39 0.0013 35.3 4.0 50 309-361 5-55 (393)
34 2fg9_A 5-nitroimidazole antibi 22.5 88 0.003 28.6 4.7 100 121-222 30-167 (178)
35 2b78_A Hypothetical protein SM 22.4 1.2E+02 0.004 31.2 6.1 53 310-364 2-54 (385)
36 1wxx_A TT1595, hypothetical pr 20.7 1E+02 0.0034 31.5 5.1 49 311-362 2-50 (382)
No 1
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=100.00 E-value=1.5e-128 Score=1019.16 Aligned_cols=390 Identities=71% Similarity=1.188 Sum_probs=328.6
Q ss_pred cCCccccCCCCCCCCCCCCcchhcccccceeeeccCcCCCCCCCCCCCCCccccccceEEEeeCCCCCCHHHHHHHHHHH
Q 007467 46 AKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRI 125 (602)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~wplllkn~~~l~vr~~~~t~~~~g~~p~~R~i~~~i~nGIInlDKP~G~TSheVVa~VKri 125 (602)
.++|.|+|++.+|++|||+||||||||++|++|++||||+++||+|++|+|.+|+.+||||||||.|||||+||+||||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~lll~~~~~~~~~~~~~t~~~~g~~p~~r~~~~~~~~Gil~ldKP~G~TS~dvv~~vrr~ 82 (400)
T 3u28_A 3 KEDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRI 82 (400)
T ss_dssp --CCSCCCC------CCTTSCGGGTTGGGSEESCSCCCCCCCSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHH
T ss_pred CCCceeCcccCCCCCCcccCchhhhchHheeeecccccCCccCCCcCcCCHHHhccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCCCCCccceEEEEeccccccccccCCCcEEEEEEEEcCcCCCHHHHHHHHHhccccccccCcchhhccc
Q 007467 126 LRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205 (602)
Q Consensus 126 L~~kKvGHsGTLDP~ATGVL~V~IG~ATKLv~~l~~~~KeYva~i~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr 205 (602)
|+.+|+||+|||||+||||||||||+|||+++||++++|+|+|+++||..+++.++|+++|..|+|.|+|+||+||||||
T Consensus 83 l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~l~~~~K~Y~a~~~lG~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvK~ 162 (400)
T 3u28_A 83 LRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKR 162 (400)
T ss_dssp HTCSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHHHSCEEEEEEEEESSCCSSTTHHHHHHHHTCEEEEECCC-----CC
T ss_pred hCcCcccccCCCCCCCeEEEEEEEChHHhHhHHhcCCCcEEEEEEEeCCCCCCHHHHHHHHHhCcCceEEECCceecccC
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred CCeEEEEEEEEEEEEecCCceEEEEEEeecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhH
Q 007467 206 QLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWL 285 (602)
Q Consensus 206 ~lR~rtIY~ieLLe~d~e~~~~~f~V~Cs~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~ 285 (602)
++|.++||++++++|+.+.+.+.|+|+||+||||||||+|||..|||||||++||||++|+|+++++++|||||.+++|+
T Consensus 163 ~~R~v~I~~i~ll~~~~~~~~~~~~V~CskGTYIRsL~~DiG~~LG~gahm~~LrRt~~G~F~~~~a~vtL~~l~~~~~~ 242 (400)
T 3u28_A 163 QLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWV 242 (400)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEETTSSCBCHHHHHHHHHH
T ss_pred CceeEEEEEEEEEEEcCCCceEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEcCcchhhhcCCHHHHHHhhhh
Confidence 99999999999999997667899999999999999999999999999999999999999999999989999999999999
Q ss_pred hhcccchHHHhhhccchHHHHhhhceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecc
Q 007467 286 YDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365 (602)
Q Consensus 286 ~~~~~des~Lr~~I~PlE~~L~~lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss 365 (602)
|++..++++|+.+|+|+|.+|.+||+|+|+++++++|+||+.|+.||+++++.+|..|+.|++++.+|++||||+++|++
T Consensus 243 ~~~~~~~~~l~~~l~P~e~~l~~lp~V~L~deaa~~V~NGq~L~~pgVl~~~~~i~~gd~VvVvt~kGelLAIG~A~mss 322 (400)
T 3u28_A 243 YDNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMST 322 (400)
T ss_dssp HHHHCCCHHHHHHCEEGGGGGTTSCEEEECHHHHHHHHHHSEEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCH
T ss_pred hhcccchhhHhhhcCCHHHHHhhCCccccCHHHHHHHHCcCccccCccccccccCCCCCEEEEEeCCCcEEEEEEEEeCH
Confidence 99888889999999999999999999999999999999999999999988888888899999999999999999999999
Q ss_pred cccccCCCCeEEeeeEeeecCCCCCCCcCCCccchhhhhhhhcCcccccCCCCCCCchhhhhcccCCCCC
Q 007467 366 AVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGG 435 (602)
Q Consensus 366 ~~i~~~d~GiVak~kRViM~~dtYP~~Wg~gp~a~~kk~~~~~g~l~k~g~~~~~tp~~w~~~~~~~~~~ 435 (602)
.+|.++++|+|++++||||++|||||+||+||+|++||+||++|+||||||||++||++|.++|+||+..
T Consensus 323 ~em~~~~~G~vvk~~rV~m~~~~yp~~w~~~~~~~~k~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (400)
T 3u28_A 323 VDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMKADGKLDKYGRVNENTPEQWKKEYVPLDNA 392 (400)
T ss_dssp HHHHHCSSSEEEEEEEECSCTTSSCCCC------------------------------------------
T ss_pred HHHhhcCCcEEEEEEEEeecCCCCccccCcChhHHHHHHHHHccCccccCCCCCCChHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999754
No 2
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=3.3e-93 Score=743.33 Aligned_cols=318 Identities=45% Similarity=0.763 Sum_probs=289.5
Q ss_pred ceeeeccCcCCCCCCCCCCCCCccccccceEEEeeCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCccceEEEEeccc
Q 007467 74 RLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRAT 153 (602)
Q Consensus 74 ~l~vr~~~~t~~~~g~~p~~R~i~~~i~nGIInlDKP~G~TSheVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~AT 153 (602)
.|++|++||||++|||+|++|||.+|+.|||||||||.|||||+||+|||++|+.+|+||+|||||+||||||||+|+||
T Consensus 38 ~~~~~~~~~t~~~~g~~p~~r~~~~~~~~Gil~vdKP~G~TS~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~aT 117 (357)
T 2apo_A 38 ELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERAT 117 (357)
T ss_dssp CEEESSCCCCCTTSSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGG
T ss_pred eEEEecccccCcccCCCcccCChhHhccCcEEEEECCCCCCHHHHHHHHHHHhCccccccccccCCCceeEEEEEeCHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEEEEEcCcCCCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEecCCceEEEEEEe
Q 007467 154 RLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISC 233 (602)
Q Consensus 154 KLv~~l~~~~KeYva~i~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~e~~~~~f~V~C 233 (602)
|+++||++.+|+|+|+++||..+ +.++|+++|..|+|.|+|+||+|||+||++|.++||++++++|+. +.+.|+|.|
T Consensus 118 k~~~~l~~~~K~Y~~~~~lG~~~-~~~~i~~~l~~f~G~i~Q~PP~~SAvK~~~R~v~I~~~~l~~~~~--~~~~~~v~c 194 (357)
T 2apo_A 118 KTIPMWHIPPKEYVCLMHLHRDA-SEEDILRVFKEFTGRIYQRPPLKAAVKRRLRIRKIHELELLDKDG--KDVLFRVKC 194 (357)
T ss_dssp GGGGGTTSSCEEEEEEEEESSCC-CHHHHHHHHHHHSEEEECC-----------CEEEEEEEEEEEEET--TEEEEEEEE
T ss_pred hHHHHhccCCcEEEEEEEECCCC-CHHHHHHHHHhCcccEEEeCCchhhccccccceeEEEEEEEEeeC--CEEEEEEEE
Confidence 99999999999999999999875 699999999999999999999999999999999999999999986 789999999
Q ss_pred ecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhHhhcccchHHHhhhccchHHHHhhhceee
Q 007467 234 EAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLV 313 (602)
Q Consensus 234 s~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~~~~~~des~Lr~~I~PlE~~L~~lPrIv 313 (602)
|+||||||||+|||..|||||||++||||++|+|+++++ +||+||.++.|+|.+.+++.+++.+|+|+|.+|.+||+|+
T Consensus 195 s~GTYIRsL~~DiG~~LG~~a~~~~LrRt~~G~f~~~~a-~tl~~l~~~~~~~~~~g~~~~l~~~l~P~e~~l~~lP~v~ 273 (357)
T 2apo_A 195 QSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDA-VYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRHLKKVV 273 (357)
T ss_dssp CTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGC-BCHHHHHHHHHHHHTSCCCHHHHHHEEEGGGGGTTSEEEE
T ss_pred CCCchHHHHHHHHHHhhCCCEEEEEEEEEEEccCcHHHc-cCHHHHHhhhhhhhccCchhhHhhheeChhHhhccCcEEE
Confidence 999999999999999999999999999999999999875 8999999998888777677788889999999999999999
Q ss_pred cCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEeeecCCCCCCCc
Q 007467 314 VKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKW 393 (602)
Q Consensus 314 VkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRViM~~dtYP~~W 393 (602)
|+++++++||||+.|+.||+..++.++..|+.+++++.+|++||||.+.|++.+|..+++|.+++++||||++||||++|
T Consensus 274 l~~~~~~~i~nG~~L~~pgi~~~~~~i~~gd~V~v~~~~G~flAIGea~~~~~ei~~~~kG~vvKp~rVf~~~~~yp~~w 353 (357)
T 2apo_A 274 VKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRGTYPRMW 353 (357)
T ss_dssp ECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTSCEEEEEEESSCHHHHHHCSSSEEEEEEEECSCTTSSCCC-
T ss_pred ECHHHHHHHhCcCccCCCcccccccccCCCCeEEEEcCCCEEEEEEEeccccccccccCCCeEEEEEEEeeCCCccCccc
Confidence 99999999999999998887555555667788889999999999999999999999999999899999999999999999
Q ss_pred CC
Q 007467 394 GL 395 (602)
Q Consensus 394 g~ 395 (602)
+.
T Consensus 354 ~~ 355 (357)
T 2apo_A 354 KR 355 (357)
T ss_dssp --
T ss_pred cc
Confidence 84
No 3
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=100.00 E-value=1.2e-90 Score=718.73 Aligned_cols=317 Identities=45% Similarity=0.761 Sum_probs=288.7
Q ss_pred ceee-eccCcCCCCCCCCCCCCCccccccceEEEeeCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCccceEEEEecc
Q 007467 74 RLNV-RTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152 (602)
Q Consensus 74 ~l~v-r~~~~t~~~~g~~p~~R~i~~~i~nGIInlDKP~G~TSheVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~A 152 (602)
.|++ +++||||++|||+|++|||.+|+.|||||||||.|||||+||+|||++|+.+|+||+|||||+||||||||+|+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~Gil~vdKP~g~tS~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~a 96 (334)
T 2aus_C 17 EVIVKDDKAETNPKWGFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERA 96 (334)
T ss_dssp CEEESCTTCCCCTTSSCCGGGCCHHHHHHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG
T ss_pred eEEEecccccCCcccCCCcccCChhHhccCcEEEEECCCCCCHHHHHHHHHHHhCcceeccccccCCccceeEEEEeChh
Confidence 3788 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEEEEEcCcCCCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEecCCceEEEEEE
Q 007467 153 TRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWIS 232 (602)
Q Consensus 153 TKLv~~l~~~~KeYva~i~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~e~~~~~f~V~ 232 (602)
||+++|+++.+|+|+|+++||..+ +.++|+++|..|+|.|+|+||+|||+||++|.++||++++++|+. +.+.|+|+
T Consensus 97 Tk~~~~l~~~~K~Y~~~~~lg~~~-~~~~i~~~l~~f~G~i~Q~pP~~SA~k~~~R~v~I~~~~~~~~~~--~~~~~~v~ 173 (334)
T 2aus_C 97 TRVVQALLPAGKEYVALMHLHGDV-PEDKIRAVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEILEIDG--RDVLFRVG 173 (334)
T ss_dssp GGGGGGGTTCCEEEEEEEEESSCC-CHHHHHHHHHHTSEEEECC------------EEEEEEEEEEEEET--TEEEEEEE
T ss_pred hhhHHHhcccCcEEEEEEEECCCC-CHHHHHHHHHhCcCeEEEeCCccccCcCCcCCEEEEEEEEEEeeC--CeEEEEEE
Confidence 999999999999999999999875 699999999999999999999999999999999999999999986 78999999
Q ss_pred eecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhHhhcccchHHHhhhccchHHHHhhhcee
Q 007467 233 CEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRL 312 (602)
Q Consensus 233 Cs~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~~~~~~des~Lr~~I~PlE~~L~~lPrI 312 (602)
||+||||||||||||..|||||||++||||++|+|+++++++||++|.++.|+|.+.+++..++.+|+|++.+|.+||+|
T Consensus 174 cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~g~f~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~p~~~~l~~~p~V 253 (334)
T 2aus_C 174 VEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVEHLPKI 253 (334)
T ss_dssp ECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEESSTTEECHHHHHHHHHHHHTTCCCHHHHHHSEEGGGGGTTSCEE
T ss_pred ECCCcHHHHHHHHHHHHhCCCEEEeEEEEEEEccCchhhcccCHHHHHhhhhhhccccchhhhhhhccChhHhcccccEE
Confidence 99999999999999999999999999999999999999878999999998887776666677888899999999999999
Q ss_pred ecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEeeecCCCCCCC
Q 007467 313 VVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRK 392 (602)
Q Consensus 313 vVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRViM~~dtYP~~ 392 (602)
.|+++++.+|+||+.|..+++...+.++..|+.+++++.+|++||||.+.|++.+|..+++|.+++++||||++||||++
T Consensus 254 ~L~de~a~~V~nGq~L~~~gv~~~~~~i~~gd~V~V~~~~G~fLAIGe~~~s~~e~~~~~~G~~vKp~rV~~~~~~yp~~ 333 (334)
T 2aus_C 254 WIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKGIAVDVEKVFMPRDWYPKL 333 (334)
T ss_dssp EECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHCSSSEEEEEEEECSCTTTSCCC
T ss_pred EECHHHHHHHHCCCccccCcccccccccCCCCEEEEEecCCeEEEEEEeccCchhccccCCCeEEEEEEEeeCCCCCCCC
Confidence 99999999999999999887655555566778888898899999999999999999999999989999999999999999
Q ss_pred c
Q 007467 393 W 393 (602)
Q Consensus 393 W 393 (602)
|
T Consensus 334 w 334 (334)
T 2aus_C 334 W 334 (334)
T ss_dssp C
T ss_pred C
Confidence 9
No 4
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=100.00 E-value=2.4e-71 Score=569.03 Aligned_cols=247 Identities=28% Similarity=0.414 Sum_probs=222.7
Q ss_pred ccceEEEeeCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCccceEEEEeccccccccccCCCcEEEEEEEEcCcC---
Q 007467 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKV--- 176 (602)
Q Consensus 100 i~nGIInlDKP~G~TSheVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~ATKLv~~l~~~~KeYva~i~LG~~t--- 176 (602)
+.|||||||||.|||||+||+||||+|+.+|+||+|||||+||||||||+|+|||+++||++.+|+|+|+++||..|
T Consensus 1 ~~~Gil~vdKP~G~TS~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (309)
T 1r3e_A 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETF 80 (309)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccceecccccCCCCcceeEEEEECHHHhHHHHhCccCcEEEEEEEECCcccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999633
Q ss_pred -------------CCHHHHHHHHHhccccccccCcchhhcc-----------------cCCeEEEEEEEEEEEEecCCce
Q 007467 177 -------------PDVAKVARALEALTGAVFQRPPLISAVK-----------------RQLRIRTIYESKLLEYDVDRHL 226 (602)
Q Consensus 177 -------------~s~e~L~~aL~~F~G~I~Q~PP~ySAVK-----------------r~lR~rtIY~ieLLe~d~e~~~ 226 (602)
.+.++|+++|..|+|.|+|+||+||||| +++|.++||+|++++|+. +.
T Consensus 81 D~eG~v~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~--p~ 158 (309)
T 1r3e_A 81 DITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEG--RD 158 (309)
T ss_dssp BTTSCEEEECCCCCCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEET--TE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHhccceEEEeCChHHhcccCCccHHHHHhCCCcccccceEEEEEEEEEEEeeC--CE
Confidence 3789999999999999999999999999 458999999999999986 78
Q ss_pred EEEEEEeecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhHhhcccchHHHhhhccchHHHH
Q 007467 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306 (602)
Q Consensus 227 ~~f~V~Cs~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~~~~~~des~Lr~~I~PlE~~L 306 (602)
+.|+|+||+||||||||+|||..|||||||++||||++|+|++++ ++||++|.++ .++..|+|++.+|
T Consensus 159 ~~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~-a~~l~~l~~~-----------~l~~~l~p~~~~l 226 (309)
T 1r3e_A 159 VSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEE-SLNVFEAAPE-----------EIENRIIPLEKCL 226 (309)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGG-CBCTTTSCHH-----------HHHHHCEEGGGSS
T ss_pred EEEEEEECCCchHHHHHHHHHHHhCCCEEEEEEEEEEEcCCcHHH-ccCHHHHhhc-----------hhhccccCHHHHh
Confidence 999999999999999999999999999999999999999999987 5899998653 2456789999999
Q ss_pred hhhceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEE
Q 007467 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIA 361 (602)
Q Consensus 307 ~~lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia 361 (602)
.+||++.|+++++++|+||+.|..+++. .+..+..++.+++++.+|++||||..
T Consensus 227 ~~~p~v~l~~~~~~~~~~G~~l~~~~~~-~~~~~~~~~~~~~~~~~g~~~ai~~~ 280 (309)
T 1r3e_A 227 EWLPRVVVHQESTKMILNGSQIHLEMLK-EWDGFKKGEVVRVFNEEGRLLALAEA 280 (309)
T ss_dssp TTSCEEECCTTTHHHHTTTCCEESSSCC-EECCCCTTCEEEEECSSSCEEEEEEE
T ss_pred cCCCeEEeCHHHHHHHHCcCcccCCccc-ccccccCCCEEEEEcCCCeEEEEEEE
Confidence 9999999999999999999999876542 11112224467788889999999865
No 5
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=100.00 E-value=1.1e-70 Score=567.59 Aligned_cols=264 Identities=28% Similarity=0.439 Sum_probs=232.3
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCccceEEEEeccccccccccCCCcEEEEEEEEcCcC----
Q 007467 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKV---- 176 (602)
Q Consensus 101 ~nGIInlDKP~G~TSheVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~ATKLv~~l~~~~KeYva~i~LG~~t---- 176 (602)
+|||||||||.|||||+||+|||++|+.+|+||+|||||+||||||||+|+|||+++||++.+|+|+++++||..|
T Consensus 24 ~~Gil~vdKP~G~TS~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D 103 (327)
T 1k8w_A 24 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD 103 (327)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEEEEETEEESSSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHHhHHHHhccCCcEEEEEEEECCcccCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred ------------CCHHHHHHHHHhccccccccCcchhhccc-----------------CCeEEEEEEEEEEEEecCCceE
Q 007467 177 ------------PDVAKVARALEALTGAVFQRPPLISAVKR-----------------QLRIRTIYESKLLEYDVDRHLV 227 (602)
Q Consensus 177 ------------~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr-----------------~lR~rtIY~ieLLe~d~e~~~~ 227 (602)
.+.++|+++|..|+|.|+|+||+|||||+ ++|.++||+|+|++|+. +.+
T Consensus 104 ~eG~v~~~~~~~~t~e~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~--~~~ 181 (327)
T 1k8w_A 104 ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NEL 181 (327)
T ss_dssp TTSCEEEECCCCCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEET--TEE
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhccceEEEeCChhheeccCCccHHHHHhCCCcccccceEEEEEEEEEEEeeC--CEE
Confidence 36899999999999999999999999994 47999999999999986 789
Q ss_pred EEEEEeecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhHhhccc---chHHHhhhccchHH
Q 007467 228 VFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR---DEAYLRRVIMPLEV 304 (602)
Q Consensus 228 ~f~V~Cs~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~~~~~~---des~Lr~~I~PlE~ 304 (602)
.|+|.||+||||||||+|||..|||||||++||||++|+|++++ ++||++|.++.+ +.+.. .+..++..|+|++.
T Consensus 182 ~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~F~~~~-a~~l~~l~~~~~-~~~~~~~~~~~~l~~~l~p~~~ 259 (327)
T 1k8w_A 182 ELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER-MVTLEHLRELVE-QAEQQDIPAAELLDPLLMPMDS 259 (327)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGG-CEEHHHHHHHHH-HHHHTTSCTHHHHGGGCBCTTG
T ss_pred EEEEEEcCCchHHHHHHHHHHHhCCCeEEEEEEEEEEcCCcccc-ccCHHHHHHHHH-hhhcccccchhHHhhhccCHHH
Confidence 99999999999999999999999999999999999999999986 589999986532 11111 13457778999999
Q ss_pred HHhhhceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEE-ecCCcEEEEEEEEecccccccCCCCeEEeeeEee
Q 007467 305 LLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM-TTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383 (602)
Q Consensus 305 ~L~~lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vvii-t~kGElIALGia~mss~~i~~~d~GiVak~kRVi 383 (602)
+|.+||+|.|+++++++|+||+.|..+++ ..++.++++ +.+|++||||... +.|. .+++|||
T Consensus 260 ~l~~lp~v~l~~~~~~~l~~G~~l~~~~~-------~~~~~v~v~~~~~g~~lai~~~~---------~~~~-~~p~rvf 322 (327)
T 1k8w_A 260 PASDYPVVNLPLTSSVYFKNGNPVRTSGA-------PLEGLVRVTEGENGKFIGMGEID---------DEGR-VAPRRLV 322 (327)
T ss_dssp GGTTSCEEEECHHHHHHHTTTCCBCCSSC-------CSSSEEEEEETTTTEEEEEEEEC---------TTSC-EEEEEEC
T ss_pred HHccCCEEEeCHHHHHHHhCcCccCCCCC-------CCCCeEEEEECCCCEEEEEEEEC---------CCCE-EEEEEEE
Confidence 99999999999999999999999986653 113456677 6789999988651 3454 5689999
Q ss_pred ec
Q 007467 384 MD 385 (602)
Q Consensus 384 M~ 385 (602)
+.
T Consensus 323 ~~ 324 (327)
T 1k8w_A 323 VE 324 (327)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 6
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=9.7e-70 Score=558.36 Aligned_cols=250 Identities=31% Similarity=0.457 Sum_probs=211.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHHHhcccccccCCCCCCCCccceEEEEeccccccccccCCCcEEEEEEEEcCcC----
Q 007467 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKV---- 176 (602)
Q Consensus 101 ~nGIInlDKP~G~TSheVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~ATKLv~~l~~~~KeYva~i~LG~~t---- 176 (602)
.|||||||||.|||||+||+||||+|+.+|+||+|||||+||||||||+|+|||+++||++.+|+|+++++||..|
T Consensus 5 ~~Gil~vdKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D 84 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTED 84 (316)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccccccccCCCCCeEEEEEEECHHHhHHHHhCcCCcEEEEEEEECCccCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred -------------CCHHHHHHHHHhccccccccCcchhhccc-----------------CCeEEEEEEEEEEEEecC--C
Q 007467 177 -------------PDVAKVARALEALTGAVFQRPPLISAVKR-----------------QLRIRTIYESKLLEYDVD--R 224 (602)
Q Consensus 177 -------------~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr-----------------~lR~rtIY~ieLLe~d~e--~ 224 (602)
.+.++|+++|..|+|.|+|+||+|||||+ ++|.++||+|+|++|+.+ .
T Consensus 85 ~eG~v~~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkrlYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~~~ 164 (316)
T 1sgv_A 85 AEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQL 164 (316)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEEEETTE
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHhccccEEEeCCHHHhcccCChhHHHHHhCCCcccccceEEEEEEEEEEEeeccCCC
Confidence 36899999999999999999999999996 479999999999999642 2
Q ss_pred ceEEEEEEeecCchhHHHHHHHHHHhCCceEeceeeEEEEeCccccCcccChHHHHHHHhHhhcccchHHHhhhccch-H
Q 007467 225 HLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPL-E 303 (602)
Q Consensus 225 ~~~~f~V~Cs~GTYIRSL~~DIG~~LG~gAhM~eLRRtrsG~Fseed~lvTL~dL~Da~~~~~~~~des~Lr~~I~Pl-E 303 (602)
+.+.|+|+||+||||||||+|||..|||||||++||||++|+|++++ ++||++|.++. ..|+|+ +
T Consensus 165 p~~~~~v~CskGTYIRsLa~DiG~~Lg~~a~~~~LrRt~~G~F~~~~-a~tl~~l~~~~-------------~~llpi~~ 230 (316)
T 1sgv_A 165 IDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQ-ARSLDDLAERP-------------ALSLSLDE 230 (316)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGG-CBCHHHHHHSC-------------CCSEEHHH
T ss_pred ceEEEEEEECCCCcHHHHHHHHHHHhCCCEEEeeEEEEEEccCcHHH-ccCHHHHhhch-------------hccCCHHH
Confidence 68999999999999999999999999999999999999999999986 58999996520 257898 7
Q ss_pred HHHhhhceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEee
Q 007467 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383 (602)
Q Consensus 304 ~~L~~lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRVi 383 (602)
.+|.+||++.|+++++++|+||+.|..++. ++.+++++.+|++||||... .|. .+++|||
T Consensus 231 ~~l~~~p~v~l~~~~~~~l~~G~~l~~~~~---------~~~~~~~~~~g~~lai~~~~----------~~~-~~p~rvf 290 (316)
T 1sgv_A 231 ACLLMFARRDLTAAEASAAANGRSLPAVGI---------DGVYAACDADGRVIALLRDE----------GSR-TRSVAVL 290 (316)
T ss_dssp HHHHHSEEEECCHHHHHHHHTTCCCBCCCC---------CSCEEEECTTSCEEEEEEEE----------TTE-EEEEEES
T ss_pred HHHccCCeEEeCHHHHHHHHCcCcccCCCC---------CCeEEEECCCCEEEEEEEEc----------CCe-EEEEEEE
Confidence 789999999999999999999999875432 13467778889999998651 343 5688998
Q ss_pred e
Q 007467 384 M 384 (602)
Q Consensus 384 M 384 (602)
.
T Consensus 291 ~ 291 (316)
T 1sgv_A 291 R 291 (316)
T ss_dssp C
T ss_pred e
Confidence 5
No 7
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-44 Score=345.56 Aligned_cols=130 Identities=62% Similarity=1.107 Sum_probs=118.8
Q ss_pred cchHHHHhhhceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEee
Q 007467 300 MPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARI 379 (602)
Q Consensus 300 ~PlE~~L~~lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~ 379 (602)
+|+|.+|.++|+|+|+++|+++||+|+.|+.|||..++.+|+.|+.|+|++.+|++||+|++.|++.+|..+++|+++++
T Consensus 66 ~P~E~aL~~~g~VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~~IAvG~a~~sS~Ei~~~~kG~aVkv 145 (195)
T 3zv0_C 66 GPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASV 145 (195)
T ss_dssp SCGGGGGTTSEEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCSSSEEEEE
T ss_pred ccHHHHhccCCeEEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEcCCCCEEEEEEEcCCHHHHhhcCCcEEEEE
Confidence 48889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeecCCCCCCCcCCCccchhhhhhhhcCcccccCCCCCCCchhhhhcc
Q 007467 380 KRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNV 429 (602)
Q Consensus 380 kRViM~~dtYP~~Wg~gp~a~~kk~~~~~g~l~k~g~~~~~tp~~w~~~~ 429 (602)
+||||++||||++||+||+|++||+||++|+|||||+||++||++|++.|
T Consensus 146 ~rVimd~~~Yp~~W~~gp~~~~k~~~~~~g~~~k~~~~~~~~~~~~~~~~ 195 (195)
T 3zv0_C 146 KRCIMERDLYPRRWGLGPVAQKKKQMKADGKLDKYGRVNENTPEQWKKEY 195 (195)
T ss_dssp EEECBCTTSSCCCCSSCCHHHHHHHHHHHTCSCTTSCCCCC---------
T ss_pred EEEEeCCCCcCcccccCcHHHHHHHHHHcccccccCCCCCCChhHhhhcC
Confidence 99999999999999999999999999999999999999999999998876
No 8
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=171.06 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=114.2
Q ss_pred EEEeeCCCCC--CHHHHHHHHHHHhcccccccCCCCCCCCcc-ceEEEEeccccc-ccccc----CCCcEEEEEEEEcCc
Q 007467 104 IINLDKPANP--SSHEVVAWIKRILRVEKTGHSGTLDPKVTG-NLIVCIDRATRL-VKSQQ----GAGKEYVCVARLHDK 175 (602)
Q Consensus 104 IInlDKP~G~--TSheVVa~VKriL~~kKvGHsGTLDP~ATG-VL~V~IG~ATKL-v~~l~----~~~KeYva~i~LG~~ 175 (602)
+|=|--|.-. ++.++ ..+....+. ++| |-+..+.-.++- +..+. ...|+|+|.+.++..
T Consensus 358 vlEi~~P~r~~~~~~dl-~~le~~IN~------------~~~~V~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~~~~ 424 (530)
T 2v9k_A 358 AIELVNPHRVHFTSQEI-KELQQKINN------------SSNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKA 424 (530)
T ss_dssp EEEEESCSCCCCCHHHH-HHHHHHHHT------------TCSSEEEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEESSC
T ss_pred EEEecCccccccchhHH-HHHHHHHhc------------cCCcEEEEeeEEEcHHHHHHHhcccccCCeEEEEEEEEcCC
Confidence 6656667654 34553 344433332 233 555555555543 33333 468999999999999
Q ss_pred CCCHHHHHHHHHhccc-cccccCcchhhcccCC--eEEEEEEEEEEEEecCCceEEEEEEeecCchhHHHHH-H------
Q 007467 176 VPDVAKVARALEALTG-AVFQRPPLISAVKRQL--RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCV-H------ 245 (602)
Q Consensus 176 t~s~e~L~~aL~~F~G-~I~Q~PP~ySAVKr~l--R~rtIY~ieLLe~d~e~~~~~f~V~Cs~GTYIRSL~~-D------ 245 (602)
+. .++|+.+.. |.| .|+|+||..++++|++ |.|+||+++++.++. ++++|+|.|++|||||.||| |
T Consensus 425 v~-~e~l~~~~~-l~~l~I~QrtP~RV~hRR~~~~R~R~I~~i~~~~~~~--~~~~l~i~~eaGtYIKelvhGD~GRT~P 500 (530)
T 2v9k_A 425 IQ-KKDIEFLND-IKDLKIDQKTPLRVLHRRPLAVRARVIHFMETQYVDE--HHFRLHLKTQAGTYIKEFVHGDFGRTKP 500 (530)
T ss_dssp CC-HHHHGGGGG-CCSEEEEEECCGGGTTTSCCCEEEEEEEEEEEEEEET--TEEEEEEEECTTCCHHHHHHCTTTTEES
T ss_pred CC-HHHHHHHHh-cCCceeeccCCeEEEEecCCCccceEEEEEEEEEecC--CEEEEEEEecCCCEEEEEEcCCCCCcCC
Confidence 84 899998877 999 8999999999999997 999999999999986 79999999999999999999 6
Q ss_pred -HHHHhCCceEeceeeEEEE
Q 007467 246 -LGLILGVGGHMQELRRVRS 264 (602)
Q Consensus 246 -IG~~LG~gAhM~eLRRtrs 264 (602)
||.+||++|+|.+|.-+.+
T Consensus 501 sl~~lLg~~a~i~eLDV~~V 520 (530)
T 2v9k_A 501 NIGSLMNVTADILELDVESV 520 (530)
T ss_dssp CHHHHHTSCEEEEEEEEEEE
T ss_pred cHHHHhCCCcEEEEeEEeEE
Confidence 9999999999999987765
No 9
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=99.13 E-value=1.7e-11 Score=118.17 Aligned_cols=85 Identities=19% Similarity=0.321 Sum_probs=77.1
Q ss_pred hceeecCHHHHHHHHcCCcccCCccccccC---ccccCCEEEEEec-CCcEEEEEEEEecccccccCCCCeEEeeeEeee
Q 007467 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFEN---DIEVGEEVVLMTT-KGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384 (602)
Q Consensus 309 lPrIvVkDsav~aI~nGakL~ipGilr~e~---~Ie~ge~Vviit~-kGElIALGia~mss~~i~~~d~GiVak~kRViM 384 (602)
+|+|+|+++++++||+||.||+||++..+. +|+.|+.|+|++. +|++||+|++.|++.+|..+++|+++++.+++|
T Consensus 92 lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e~~~~~kG~aV~v~H~~~ 171 (188)
T 3r90_A 92 LPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLN 171 (188)
T ss_dssp SCEEEECGGGHHHHTTTCCEETHHHHSTTCBCCCCCTTCEEEEEETTCSSCSEEEEESSCHHHHHHHCCSEEEEEEEETT
T ss_pred CCEEEEChhHHHHhhcCCccccCeEEccCCCcccccCCCEEEEEECCCCcEEEEEEEEeCHHHHhhcCCcEEEEEEEEEC
Confidence 789999999999999999999999998875 7999999999998 899999999999999999999999999998888
Q ss_pred cCCCCCCCcCCCcc
Q 007467 385 DRDTYPRKWGLGPR 398 (602)
Q Consensus 385 ~~dtYP~~Wg~gp~ 398 (602)
+. -|.+|+.
T Consensus 172 D~-----LW~~~~~ 180 (188)
T 3r90_A 172 DG-----LWHMKTY 180 (188)
T ss_dssp SH-----HHHHCBS
T ss_pred ch-----hhhcCCc
Confidence 63 3766654
No 10
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=98.74 E-value=6e-09 Score=96.25 Aligned_cols=84 Identities=25% Similarity=0.422 Sum_probs=73.1
Q ss_pred hceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEeeecCCC
Q 007467 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388 (602)
Q Consensus 309 lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRViM~~dt 388 (602)
.++|+|++.++.+|++|+.|+.||+...+.+|..|+.|+|++.+|++||+|++.|++.+|....+|+++.+.+. -.|.
T Consensus 70 ~~~v~vd~ga~~~l~~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~~ia~G~~~~ss~e~~~~~~G~~v~v~h~--~~D~ 147 (153)
T 1q7h_A 70 RNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGEVMATKRGKAARIIHF--PGDE 147 (153)
T ss_dssp SSEEEECTTTHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTSCEEEEEEESSCHHHHHHHCCSEEEEEEEC--TTSH
T ss_pred CCEEEECHhHHHHHHcCCCcCccccCcccCceeCCCEEEEEECCCCEEEEEEEecCHHHHHhcCCCeEEEEEEE--cCCE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998754333 2333
Q ss_pred CCCCcCCCc
Q 007467 389 YPRKWGLGP 397 (602)
Q Consensus 389 YP~~Wg~gp 397 (602)
. |.+||
T Consensus 148 l---w~~~~ 153 (153)
T 1q7h_A 148 L---IRAFP 153 (153)
T ss_dssp H---HHHCC
T ss_pred E---EEecC
Confidence 3 66554
No 11
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=98.71 E-value=1.5e-08 Score=96.58 Aligned_cols=73 Identities=30% Similarity=0.516 Sum_probs=67.8
Q ss_pred ceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEec-CCcEEEEEEEEecccccccCCCCeEEeeeEe
Q 007467 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTT-KGEAVALGIAEMTTAVMATCDHGVVARIKRV 382 (602)
Q Consensus 310 PrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~-kGElIALGia~mss~~i~~~d~GiVak~kRV 382 (602)
++|+|++.|+.+|++|+.|+.||+...+.+|..|+.|.|++. +|++||+|++.|++.+|....+|+++++...
T Consensus 95 ~~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~~~~g~~iavG~~~~ss~e~~~~~kG~av~~~H~ 168 (179)
T 3d79_A 95 RRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEKYGRPLAIGIALMSGKVMKEKNRGKAVKVIHH 168 (179)
T ss_dssp TEEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEETTTCCEEEEEEESSCHHHHHHCSSSEEEEEEEE
T ss_pred CEEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEECCCCeEEEEEEEEcCHHHHHhcCCceEEEEEEE
Confidence 799999999999999999999999999999999999999988 7999999999999999999999998865443
No 12
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=98.54 E-value=7.5e-08 Score=92.54 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=65.7
Q ss_pred hc-eeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEec-CCcEEEEEEEEeccccc----ccCCCCeEEee
Q 007467 309 YK-RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTT-KGEAVALGIAEMTTAVM----ATCDHGVVARI 379 (602)
Q Consensus 309 lP-rIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~-kGElIALGia~mss~~i----~~~d~GiVak~ 379 (602)
+| +|+|++.++.+|++|+.|+.||+..++.+|..|+.|.|++. +|++||+|++.|++.+| ....+|.++.+
T Consensus 91 l~g~v~vd~gA~~al~~GasLl~~GV~~~~g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~ei~~~~~~~~kG~av~v 167 (187)
T 2cx0_A 91 LKGVVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGRAVRR 167 (187)
T ss_dssp SSEEEEECHHHHHHHHHTCCEEGGGEEEEEECCCTTCEEEEEETTTTEEEEEEEESSCHHHHHHHHHHTCCSEEEEE
T ss_pred CCcEEEECccHHHHHhCCCCcCCCccEeCCCCcCCCCEEEEEECCCCeEEEEEEEecCHHHHhHHHhccCCceEEEE
Confidence 46 99999999999999999999999999889999999999998 79999999999999999 77899987743
No 13
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=98.44 E-value=7e-08 Score=99.33 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=62.7
Q ss_pred ceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEeeecC
Q 007467 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDR 386 (602)
Q Consensus 310 PrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRViM~~ 386 (602)
|+|+|++ .||+| .|+.||++..+.+|..|+.|+| .+|+++|+|+|.|++.+|..+++|+++++.+++|+.
T Consensus 231 ~~V~Vd~----~v~~G-~v~~pGv~~~~~~i~~gd~V~V--~~g~~vavG~a~ms~~em~~~~kG~aV~v~~~~~~~ 300 (306)
T 2q07_A 231 YTVEIGD----FEVKG-TIFAGGVLRADEKIRPNDVVVF--HNSRIFGVGLAAMSGKEMAGSEKGIAINVKRKFSEG 300 (306)
T ss_dssp SEEEECS----SCCCS-EEEGGGEEEECTTCCTTCEEEE--ECSSCEEEEEESSCHHHHSCC--CEEEEEEEEEC--
T ss_pred CEEEEcc----cccCC-ceeCCeeEeCCCCcCCCCEEEE--ECCEEEEEEEEeeCHHHHhhcCCceEEEEEEEccCC
Confidence 7899998 88999 9999999999999999999887 679999999999999999999999999999999975
No 14
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=98.40 E-value=2.2e-07 Score=102.85 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=69.4
Q ss_pred ceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEe
Q 007467 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382 (602)
Q Consensus 310 PrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRV 382 (602)
++|+|++.|+.+|++|+.|+.|||...+.+|+.|+.|.|++.+|++||+|++.|++.+|..+++|+++++.+-
T Consensus 508 g~v~VD~gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~~~~g~~ia~G~a~~ss~ei~~~~kG~aV~v~~~ 580 (582)
T 1iq8_A 508 MRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQYGRAVKVRKG 580 (582)
T ss_dssp TEEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCCSSEEEEEEEE
T ss_pred CEEEECchHHHHHhcCCCcCCCceEecCCCcCCCCEEEEEeCCCCEEEEEEEeeCHHHHHhcCCceEEEEEec
Confidence 5999999999999999999999999999999999999999999999999999999999999999999987653
No 15
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=98.39 E-value=5.1e-07 Score=92.10 Aligned_cols=142 Identities=16% Similarity=0.231 Sum_probs=97.3
Q ss_pred ccceEEEeeCCCCCCHH-------HHHHHHHHHhcccccccCCCCCCCCccceEEEEec--cccccccccCCCcEEEEEE
Q 007467 100 IRYGIINLDKPANPSSH-------EVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR--ATRLVKSQQGAGKEYVCVA 170 (602)
Q Consensus 100 i~nGIInlDKP~G~TSh-------eVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~--ATKLv~~l~~~~KeYva~i 170 (602)
-..-+|+||||.|+.|| .|+..+.. ..++.+.|.||-.+||||+++-+. +.+|..-.....|+|+|.+
T Consensus 65 ed~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~~~~v~K~Y~a~V 141 (290)
T 3dh3_A 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTV 141 (290)
T ss_dssp GGCCEEEEEECTTCBCCCCSSCTTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEE
T ss_pred ccceEEEEECCCccccCCCCCCCCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHHHhhCCcCEEEEEEE
Confidence 34579999999999887 46666653 467899999999999999999875 4566554556789999988
Q ss_pred EEcCcCCCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEecCCceEEEEEEeecCchhHHHHHHHHHHh
Q 007467 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250 (602)
Q Consensus 171 ~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~e~~~~~f~V~Cs~GTYIRSL~~DIG~~L 250 (602)
. |. ++.+.+.... .|....-.+ .+... ++.+ ....+.|.+..+.--.||-+|..||.
T Consensus 142 ~-G~--~~~~~i~~l~---~Gv~l~~~~--------~~~~~---v~~~----~~~~l~l~l~tGR~HQIR~~~~~lG~-- 198 (290)
T 3dh3_A 142 D-KP--ITEEFIRGMS---AGVPILGTV--------TKKCK---VKKE----APFVFRITLVQGLNRQIRRMCEHFGY-- 198 (290)
T ss_dssp S-SC--CCHHHHHHHH---TCCBCSSSB--------CCCCE---EEEC----SSSEEEEEESCCCTTHHHHHHHHTTC--
T ss_pred C-CC--CCHHHHHHHh---cCcccCCcc--------cceEE---EEEc----CCeEEEEEEeCCCChHHHHHHHHcCC--
Confidence 5 32 2355555422 232211110 11111 1111 12467778888888999999987553
Q ss_pred CCceEeceeeEEEEeCccccC
Q 007467 251 GVGGHMQELRRVRSGILGEND 271 (602)
Q Consensus 251 G~gAhM~eLRRtrsG~Fseed 271 (602)
.+..|.|+++|+|++.+
T Consensus 199 ----pV~~L~R~~iG~l~L~~ 215 (290)
T 3dh3_A 199 ----EVKKLERTRIMNVSLSG 215 (290)
T ss_dssp ----CEEEEEEEEETTEECTT
T ss_pred ----eEEEeEEEEECCEecCC
Confidence 49999999999999863
No 16
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=97.58 E-value=8.3e-05 Score=70.57 Aligned_cols=69 Identities=10% Similarity=0.191 Sum_probs=56.7
Q ss_pred eeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEeeecCCCCC
Q 007467 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYP 390 (602)
Q Consensus 311 rIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRViM~~dtYP 390 (602)
+|+|++.++..+.||+.++.|||.+++ +..|+.|++++..|.++|+|++.++ ..|+|+ .-+.+.+.|=
T Consensus 97 kV~V~~~ae~~flyG~dV~k~gI~~~~--~~~~~~VvV~~~~~~pLG~G~a~~s-------~~gkvv---~n~~dvGeYL 164 (166)
T 2p38_A 97 YVILGPKASFLFTTGKDAPKEAVREIK--WQGSKRVVVLNDLGDIIGIGLINPK-------SDRRFI---KNLKDVGEFL 164 (166)
T ss_dssp EEEECHHHHHHHHTTCCBCGGGEEEEE--CSSCSEEEEECTTSCEEEEEEECTT-------CSTTSE---EEEEC-----
T ss_pred EEEECCcceEeeecCCCcchhcceEEe--ecCCCEEEEEECCCcEEEEEEEEEC-------CCCEEE---EEcccceeee
Confidence 789999999999999999999999886 8889999999999999999999887 678776 4566667664
Q ss_pred C
Q 007467 391 R 391 (602)
Q Consensus 391 ~ 391 (602)
|
T Consensus 165 R 165 (166)
T 2p38_A 165 R 165 (166)
T ss_dssp -
T ss_pred c
Confidence 4
No 17
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=97.45 E-value=0.0001 Score=73.50 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=82.4
Q ss_pred eEEEeeCCCCCCHHH-------HHHHHHHHhcccccccCCCCCCCCccceEEEEec--cccccccccCCCcEEEEEEEEc
Q 007467 103 GIINLDKPANPSSHE-------VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR--ATRLVKSQQGAGKEYVCVARLH 173 (602)
Q Consensus 103 GIInlDKP~G~TShe-------VVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~--ATKLv~~l~~~~KeYva~i~LG 173 (602)
-+|+||||.|+-||- |+..+.. ..++...|-||-.+||||+++-+. +.+|..--....|+|+|++. |
T Consensus 15 ~~lvlnKPaG~vs~~~~~~~~tv~dll~~---~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p~~~v~K~Y~a~V~-G 90 (237)
T 2gml_A 15 VLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD-K 90 (237)
T ss_dssp CEEEEEECTTCBCCSSSSCSSBHHHHSCC---SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHHSCEEEEEEES-S
T ss_pred EEEEEECCCCCEeCCCCCCCCCHHHHhhc---cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCccCCCCEEEEEEEc-c
Confidence 489999999997662 3433321 246889999999999999998754 24444333357899999884 2
Q ss_pred CcCCCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEecCCceEEEEEEeecCchhHHHHHHHHHHhCCc
Q 007467 174 DKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVG 253 (602)
Q Consensus 174 ~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~e~~~~~f~V~Cs~GTYIRSL~~DIG~~LG~g 253 (602)
. ++.+.|.. |. .|.... .- ..++.. ++++. . ..+.|.+.-+.-=-||-+|..||.
T Consensus 91 ~--~~~~~i~~-l~--~Gv~l~------~~--~~~~a~---~~~l~--~--s~l~i~L~tGR~HQIRr~~a~lG~----- 145 (237)
T 2gml_A 91 P--ITEEFIRG-MS--AGVPIL------GT--VTKKCK---VKKEA--P--FVFRITLVQGLNRQIRRMCEHFGY----- 145 (237)
T ss_dssp C--CCHHHHHH-HS--SCCEET------TE--ECCCCE---EEEEE--T--TEEEEEECCCSTTHHHHHHHHTTC-----
T ss_pred c--CCHHHHHH-HH--cCeEeC------Cc--ccccEE---EEEeC--C--EEEEEEEecCCcHHHHHHHHHcCC-----
Confidence 2 23555544 21 232110 00 011111 12222 1 234444444444568888776543
Q ss_pred eEeceeeEEEEeCcccc
Q 007467 254 GHMQELRRVRSGILGEN 270 (602)
Q Consensus 254 AhM~eLRRtrsG~Fsee 270 (602)
.+..|.|+++|++.+.
T Consensus 146 -pV~~L~R~~iG~l~L~ 161 (237)
T 2gml_A 146 -EVKKLERTRIMNVSLS 161 (237)
T ss_dssp -CEEEEEEEEETTEECT
T ss_pred -CEeeeEEEEECCEecC
Confidence 4788999999999985
No 18
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=97.38 E-value=6.6e-05 Score=73.21 Aligned_cols=73 Identities=25% Similarity=0.395 Sum_probs=58.2
Q ss_pred cccceEEEeeCCCCCCHH-------HHHHHHHHHhc-ccccccCCCCCCCCccceEEEEecc--cccccccc--CCCcEE
Q 007467 99 YIRYGIINLDKPANPSSH-------EVVAWIKRILR-VEKTGHSGTLDPKVTGNLIVCIDRA--TRLVKSQQ--GAGKEY 166 (602)
Q Consensus 99 ~i~nGIInlDKP~G~TSh-------eVVa~VKriL~-~kKvGHsGTLDP~ATGVL~V~IG~A--TKLv~~l~--~~~KeY 166 (602)
|-...+|+||||+|+.+| .++.+++..++ ....+..|.||-..||||+++-+.. .+|...+. ...|+|
T Consensus 6 yed~~~lvvnKP~G~~~~~~~~~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y 85 (228)
T 1v9k_A 6 YEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 85 (228)
T ss_dssp EECSSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEE
T ss_pred EECCCEEEEECCCCCeEecCCChHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEE
Confidence 345689999999999988 48888887765 3568899999999999999999774 33555443 357999
Q ss_pred EEEEE
Q 007467 167 VCVAR 171 (602)
Q Consensus 167 va~i~ 171 (602)
+|.+.
T Consensus 86 ~a~v~ 90 (228)
T 1v9k_A 86 LALVR 90 (228)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 19
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=97.09 E-value=0.00063 Score=66.00 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=68.9
Q ss_pred ceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCC-CeEEeeeEeeecCCC
Q 007467 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDH-GVVARIKRVVMDRDT 388 (602)
Q Consensus 310 PrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~-GiVak~kRViM~~dt 388 (602)
-+|+|++.+...+.||..+...++.+++.++..|+.|++++.++.++|+|.+..++.+|..++. |+|+ -=+++.+.
T Consensus 95 ~kV~Vk~~~E~~flyG~nVfk~~V~~i~e~i~~~~~VvV~n~~d~pLG~G~a~~s~~e~~~~~~~~~vv---~~q~D~Ge 171 (188)
T 1sqw_A 95 YKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVV---FHQADIGE 171 (188)
T ss_dssp CEEEECHHHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSEEE---EEEEEGGG
T ss_pred cEEEECCCceeeEEeccchhHHhhhhcCCCCCCCCEEEEEeCCCCEEEEEEeecCHHHHHhcCCCcEEE---EEccccee
Confidence 4789999999999999999999999999999999999999999999999999999999998875 5554 23456677
Q ss_pred CCC
Q 007467 389 YPR 391 (602)
Q Consensus 389 YP~ 391 (602)
|=|
T Consensus 172 YLR 174 (188)
T 1sqw_A 172 YVR 174 (188)
T ss_dssp TCS
T ss_pred eeE
Confidence 755
No 20
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=96.67 E-value=0.0003 Score=69.11 Aligned_cols=144 Identities=20% Similarity=0.261 Sum_probs=86.6
Q ss_pred ccce-EEEeeCCCCCCHH-------HHHHHHHHHhcccccccCCCCCCCCccceEEEEec--cccccccccCCCcEEEEE
Q 007467 100 IRYG-IINLDKPANPSSH-------EVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR--ATRLVKSQQGAGKEYVCV 169 (602)
Q Consensus 100 i~nG-IInlDKP~G~TSh-------eVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~--ATKLv~~l~~~~KeYva~ 169 (602)
-..- +|+||||+|+.+| .+++++...++ .+.+..|-||-..||||+++-+. +.++..--....|+|.|.
T Consensus 59 ed~~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~~~~~v~K~Y~a~ 137 (243)
T 1vio_A 59 IEEGQYFMLNKPQGCVCSNDDGDYPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVT 137 (243)
T ss_dssp SCCCCEEEEEECTTCBSSCCC--CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEE
T ss_pred CCCCEEEEEECCCCCEeCCCCCCCCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHhCCCCCCCEEEEEE
Confidence 3456 9999999999887 34555544432 36889999999999999999975 455554334568999999
Q ss_pred EEEcCcCCCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEecCCceEEEEEEeecC--chhHHHHHHHH
Q 007467 170 ARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAG--TYVRTMCVHLG 247 (602)
Q Consensus 170 i~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~e~~~~~f~V~Cs~G--TYIRSL~~DIG 247 (602)
+. |.... +.|..... |... .+ -....+... | ++++ ...+++.-.-| ==||-.|..
T Consensus 138 v~-g~~~~--~~i~~~~~---g~~~--~~----~~~~~~~a~-~--~~l~------~sl~~~~l~tGR~HQIR~hl~~-- 194 (243)
T 1vio_A 138 LA-DPVEE--NYSAACAE---GILL--RG----EKEPTKPAK-L--EILD------DYNVNLTISEGRYHQVKRMFAA-- 194 (243)
T ss_dssp ES-SCCCT--THHHHHHH---CCCC--TT----CSSCCCCCE-E--EECS------SSEEEEEESCCCTTHHHHHHHH--
T ss_pred Ee-CCCCH--HHHHHHhC---CeEE--CC----CCccceeEE-E--EEeC------CEEEEEEEccCCcHHHHHHHHH--
Confidence 86 33332 23443332 2110 00 000111111 1 3332 12334444445 346665554
Q ss_pred HHhCCceEeceeeEEEEeCccccC
Q 007467 248 LILGVGGHMQELRRVRSGILGEND 271 (602)
Q Consensus 248 ~~LG~gAhM~eLRRtrsG~Fseed 271 (602)
||+ -+..+.|.++|++.+++
T Consensus 195 --lG~--pI~gd~r~~~G~~~l~~ 214 (243)
T 1vio_A 195 --LGN--KVVGLHRWKIGDVVLDE 214 (243)
T ss_dssp --TTC--CEEEEEEEEETTEECCT
T ss_pred --CCC--eEcccEEEEECCEEcCC
Confidence 444 48999999999999863
No 21
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=96.54 E-value=0.00036 Score=67.98 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=84.6
Q ss_pred cceEEEeeCCCCCCHHH-------HHHHHHHHhcccccccCCCCCCCCccceEEEEec--cccccccccCCCcEEEEEEE
Q 007467 101 RYGIINLDKPANPSSHE-------VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR--ATRLVKSQQGAGKEYVCVAR 171 (602)
Q Consensus 101 ~nGIInlDKP~G~TShe-------VVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~--ATKLv~~l~~~~KeYva~i~ 171 (602)
..-+|+||||+|+.+|- +++++...++ .+.+..|-||-..||||+++-+. +.++..--....|+|.|.+.
T Consensus 62 d~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 140 (234)
T 1ksk_A 62 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE 140 (234)
T ss_dssp CCCEEEEEECTTCBSSSSCSSSCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred CCEEEEEECCCCCEeCCCCCCCCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhCCCCCCCeEEEEEEc
Confidence 45799999999998873 4444444332 36889999999999999999985 44555433457899999985
Q ss_pred EcCcCCCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEecCCceEEEEEEeecC--chhHHHHHHHHHH
Q 007467 172 LHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAG--TYVRTMCVHLGLI 249 (602)
Q Consensus 172 LG~~t~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~e~~~~~f~V~Cs~G--TYIRSL~~DIG~~ 249 (602)
|.... +.|..... |... +.-....+... +++++ . . .+++.-.-| ==||-.|..
T Consensus 141 -g~~~~--~~i~~~~~---g~~~------~~~~~~~~~a~---~~~~~--~--s--~~~~~l~tGR~HQIR~h~~~---- 195 (234)
T 1ksk_A 141 -SPVAD--DTAEQFAK---GVQL------HNEKDLTKPAV---LEVIT--P--T--QVRLTISEGRYHQVKRMFAA---- 195 (234)
T ss_dssp -SCCCT--THHHHHHH---CCCC------TTCSSCCCCCE---EEEEE--T--T--EEEEEESCCCTTHHHHHHHH----
T ss_pred -cCCCH--HHHHHHHC---CeEE------CCCCcccceEE---EEEeC--C--e--EEEEEEccCCCHHHHHHHHH----
Confidence 33332 23433221 2110 00000011111 12232 1 2 234444445 335555543
Q ss_pred hCCceEeceeeEEEEeCcccc
Q 007467 250 LGVGGHMQELRRVRSGILGEN 270 (602)
Q Consensus 250 LG~gAhM~eLRRtrsG~Fsee 270 (602)
||+ .+..+.|.++|++.++
T Consensus 196 lG~--pi~gd~ry~~g~~~l~ 214 (234)
T 1ksk_A 196 VGN--HVVELHRERIGGITLD 214 (234)
T ss_dssp TTC--CEEEEEEEEETTEECC
T ss_pred cCC--eEeeeEEEEECCEecC
Confidence 444 5899999999999886
No 22
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=96.53 E-value=0.00046 Score=65.33 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=85.2
Q ss_pred cccceEEEeeCCCCCCHHH--------HHHHHHHHhcccccccCCCCCCCCccceEEEEec-c-ccccccccCCCcEEEE
Q 007467 99 YIRYGIINLDKPANPSSHE--------VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR-A-TRLVKSQQGAGKEYVC 168 (602)
Q Consensus 99 ~i~nGIInlDKP~G~TShe--------VVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~-A-TKLv~~l~~~~KeYva 168 (602)
|-..-+|+||||+|+.+|- +.+++. ..+.+..|-||-..||||+++-+. + .+|........|+|.|
T Consensus 8 yed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~----~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~v~K~Y~a 83 (189)
T 2oml_A 8 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 83 (189)
T ss_dssp CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC----CSSCEESSCCCTTCEEEEEEESCHHHHHHHHSTTSCCCEEEEE
T ss_pred cCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC----CCCceECCCCCCCCeeEEEEEcCHHHHHHHhCccCCCcEEEEE
Confidence 4557899999999998772 333332 357888999999999999999876 3 3444434457899999
Q ss_pred EEEEcCcCCCHHHHHHHHHhccccccccCcc-hhhcccCC-eEEEEEEEEEEEEecCCceEEEEEEeecCch--hHHHHH
Q 007467 169 VARLHDKVPDVAKVARALEALTGAVFQRPPL-ISAVKRQL-RIRTIYESKLLEYDVDRHLVVFWISCEAGTY--VRTMCV 244 (602)
Q Consensus 169 ~i~LG~~t~s~e~L~~aL~~F~G~I~Q~PP~-ySAVKr~l-R~rtIY~ieLLe~d~e~~~~~f~V~Cs~GTY--IRSL~~ 244 (602)
.+. |.. +.+.+..+-..+.-.--+..|. ++.+-... ...+.| .++... ..+...+++.-.-|-+ ||-.|.
T Consensus 84 ~v~-G~~--~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~--~v~~~~-~~~~slv~~~l~TGR~HQIRvhla 157 (189)
T 2oml_A 84 QVE-GIP--TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNP--PIRERK-SIPTSWLKITLYEGRNRQVRRMTA 157 (189)
T ss_dssp EEE-SCC--CHHHHHHHHHCCEETTEECCCCEEEEECCCTTCCCCSS--CCC-CT-TSCEEEEEEEESCCCTTHHHHHHH
T ss_pred EEc-CCC--CHHHHHHHHcCceeCCceeeeeEEEEeccccccccccc--cccccc-CCCcEEEEEEEeeCCCHHHHHHHH
Confidence 886 332 3444432211111000011111 11000000 001111 111111 0123445555555633 555544
Q ss_pred HHHHHhCCceEeceeeEEEEeCcccc
Q 007467 245 HLGLILGVGGHMQELRRVRSGILGEN 270 (602)
Q Consensus 245 DIG~~LG~gAhM~eLRRtrsG~Fsee 270 (602)
. ||+ -+..+.|.++|++.+.
T Consensus 158 ~----lG~--PI~gD~~Y~~g~~~l~ 177 (189)
T 2oml_A 158 H----VGF--PTLRLIRYAMGDYSLD 177 (189)
T ss_dssp H----TTC--CEEEEEEEEETTEECT
T ss_pred H----cCC--cCcceEEEEECCEEcC
Confidence 3 444 4889999999999875
No 23
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=96.49 E-value=0.0011 Score=64.08 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=54.9
Q ss_pred cccceEEEeeCCCCCCHH---------HHHHHHHHHhcccccccCCCCCCCCccceEEEEecc--cccccccc--CCCcE
Q 007467 99 YIRYGIINLDKPANPSSH---------EVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA--TRLVKSQQ--GAGKE 165 (602)
Q Consensus 99 ~i~nGIInlDKP~G~TSh---------eVVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~A--TKLv~~l~--~~~Ke 165 (602)
|-...+|+||||+|+-+| .++.+++..+ ...+..|-||-..||||+++-+.. .+|...+. ...|+
T Consensus 16 yed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~--~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~ 93 (217)
T 2i82_A 16 YQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQ 93 (217)
T ss_dssp EECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC--TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEE
T ss_pred EECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC--CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEE
Confidence 445689999999999776 2677777665 467899999999999999999763 34445443 35799
Q ss_pred EEEEEE
Q 007467 166 YVCVAR 171 (602)
Q Consensus 166 Yva~i~ 171 (602)
|+|.+.
T Consensus 94 Y~a~v~ 99 (217)
T 2i82_A 94 YVARVW 99 (217)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999887
No 24
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=96.42 E-value=0.0018 Score=67.80 Aligned_cols=62 Identities=18% Similarity=0.356 Sum_probs=57.8
Q ss_pred hceeecCHHHHHHHH-cCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEeccccccc
Q 007467 309 YKRLVVKDTTVNAIC-YGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMAT 370 (602)
Q Consensus 309 lPrIvVkDsav~aI~-nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~ 370 (602)
-..|+|++.|+.+|. +|+.|..+||...+.+|..|+.|.|++.+|+.||.|++.+++.+|..
T Consensus 275 ~G~v~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~V~i~~~~g~~ia~G~~~y~s~e~~~ 337 (367)
T 2j5v_A 275 AGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRR 337 (367)
T ss_dssp SCEEEECHHHHHHHHHHCCCBCGGGEEEEESCCCTTCEEEEEETTCCEEEEEECSSCHHHHHH
T ss_pred CCEEEECcCHHHHHHhCCCccCCcccEEEECcccCCCEEEEECCCCCEEEEEEecCCHHHHHH
Confidence 358999999999997 79999999999999999999999999999999999999999998763
No 25
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=96.29 E-value=0.0023 Score=65.45 Aligned_cols=73 Identities=33% Similarity=0.406 Sum_probs=54.9
Q ss_pred cccceEEEeeCCCCCCHH--------HHHHHHHHHhc----ccccccCCCCCCCCccceEEEEecc--cccccccc--CC
Q 007467 99 YIRYGIINLDKPANPSSH--------EVVAWIKRILR----VEKTGHSGTLDPKVTGNLIVCIDRA--TRLVKSQQ--GA 162 (602)
Q Consensus 99 ~i~nGIInlDKP~G~TSh--------eVVa~VKriL~----~kKvGHsGTLDP~ATGVL~V~IG~A--TKLv~~l~--~~ 162 (602)
|-...+|+||||+|+.+| .+++.+...+. ..+.+..|-||-..||||+++-+.. .+|...+. ..
T Consensus 87 yed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v 166 (325)
T 1v9f_A 87 YEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREI 166 (325)
T ss_dssp EECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCS
T ss_pred EECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCe
Confidence 345679999999999776 36777765542 3478999999999999999999763 33444333 35
Q ss_pred CcEEEEEEE
Q 007467 163 GKEYVCVAR 171 (602)
Q Consensus 163 ~KeYva~i~ 171 (602)
.|+|.|.+.
T Consensus 167 ~K~Y~a~v~ 175 (325)
T 1v9f_A 167 TREYEAVAI 175 (325)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 799999886
No 26
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=96.20 E-value=0.00094 Score=64.98 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=51.4
Q ss_pred cccceEEEeeCCCCCCHHH--------HHHHHHHHhcccccccCCCCCCCCccceEEEEec-c-ccccccccCCCcEEEE
Q 007467 99 YIRYGIINLDKPANPSSHE--------VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDR-A-TRLVKSQQGAGKEYVC 168 (602)
Q Consensus 99 ~i~nGIInlDKP~G~TShe--------VVa~VKriL~~kKvGHsGTLDP~ATGVL~V~IG~-A-TKLv~~l~~~~KeYva 168 (602)
|-...+|+||||+|+.+|- ++.++ .....+..|-||-..||||+++-+. + .+|........|+|+|
T Consensus 36 yed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l----~~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~~~~v~K~Y~A 111 (217)
T 2olw_A 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI----PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 (217)
T ss_dssp -CCCCEEEEEECTTBCSCSSCCTTSBCGGGTC----CCCSCEESSCCCTTCEEEEEEESCHHHHHHHHCTTCCCCEEEEE
T ss_pred eeCCcEEEEECCCCCEeccCCCCCCccHHHHh----CcCCceECCCCCCCCeeEEEEEcCHHHHHHHHcccccCCEEEEE
Confidence 4456899999999998873 33333 2357888999999999999999876 3 3344434457899999
Q ss_pred EEE
Q 007467 169 VAR 171 (602)
Q Consensus 169 ~i~ 171 (602)
.+.
T Consensus 112 ~V~ 114 (217)
T 2olw_A 112 QVE 114 (217)
T ss_dssp EEE
T ss_pred EEc
Confidence 986
No 27
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=55.24 E-value=8.2 Score=39.72 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=42.2
Q ss_pred ceeecCHHHHHHHHcCCc-ccCCccccccCccccCCEEEEEecCCcEEEEEEEEe
Q 007467 310 KRLVVKDTTVNAICYGAK-LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEM 363 (602)
Q Consensus 310 PrIvVkDsav~aI~nGak-L~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~m 363 (602)
++|.|+.....+|.+|-+ +....+.+.+.++..|+.|.+.+.+|+++++|...-
T Consensus 3 ~~~~l~~~~~~~~~~~~pwv~~~~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~ 57 (396)
T 3c0k_A 3 VRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSP 57 (396)
T ss_dssp CEEEECTTCCHHHHTTCSEEEGGGEEEEESCCCTTCEEEEECTTCCEEEEEEECT
T ss_pred eEEEECchHHHHHhcCCCeEEhhHhhcccCCCCCCCEEEEEcCCCCEEEEEEECC
Confidence 468899988899999987 444455455556788999999999999988887643
No 28
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=51.30 E-value=18 Score=37.01 Aligned_cols=55 Identities=31% Similarity=0.448 Sum_probs=40.8
Q ss_pred ceeecCHHHHHHHHcCCcccCCc-cccccCccccCCEEEEEecCCcEEEEEEEEec
Q 007467 310 KRLVVKDTTVNAICYGAKLMIPG-LLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364 (602)
Q Consensus 310 PrIvVkDsav~aI~nGakL~ipG-ilr~e~~Ie~ge~Vviit~kGElIALGia~ms 364 (602)
++|.|+..+.++|.+|.+..-.+ +-..+..+..|+.|.+++.+|+++++|...-.
T Consensus 2 ~~v~l~~~~~~~l~~g~pw~yrn~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~ 57 (396)
T 2as0_A 2 ARVVVDAQAARAIGKGAMIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANPN 57 (396)
T ss_dssp CEEEECHHHHHHHHTTCCEEEGGGEEEEESCCCTTCEEEEEETTCCEEEEEEECTT
T ss_pred ceEEECHhHHHHHHcCCcEEEHHHccccCCCCCCCCEEEEEcCCCCEEEEEEECCC
Confidence 47899999999999998653333 32333445688999999999999888876543
No 29
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=49.85 E-value=19 Score=38.76 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=42.1
Q ss_pred hceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEeeecCCC
Q 007467 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388 (602)
Q Consensus 309 lPrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRViM~~dt 388 (602)
.+.|.+++..+.+...|..|.+++- ...| .++++.+|-.+++|.. ..|.+ +|.
T Consensus 411 ~~~~~l~~~~~~~yL~Ge~i~~~~~------~~~G--~vlv~~~g~pLG~gK~----------~g~~l---------KN~ 463 (479)
T 2frx_A 411 MNAFELTPQEAEEWYRGRDVYPQAA------PVAD--DVLVTFQHQPIGLAKR----------IGSRL---------KNS 463 (479)
T ss_dssp SSEEECCHHHHHHHHTTCCCCCSSC------CSCS--EEEEEETTEEEEEEEC----------TTTTC---------CCC
T ss_pred CcEEECCHHHHHHHhcCCCCcCCCC------CCCC--EEEEEECCEeeEEEEe----------eCCEE---------ecC
Confidence 3568899999999999999987541 1123 5667788988777654 34543 489
Q ss_pred CCCCc
Q 007467 389 YPRKW 393 (602)
Q Consensus 389 YP~~W 393 (602)
||+.|
T Consensus 464 yPkgl 468 (479)
T 2frx_A 464 YPREL 468 (479)
T ss_dssp SCGGG
T ss_pred CCHHH
Confidence 99999
No 30
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=39.84 E-value=39 Score=36.26 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=42.1
Q ss_pred ceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEecccccccCCCCeEEeeeEeeecCCCC
Q 007467 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTY 389 (602)
Q Consensus 310 PrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~mss~~i~~~d~GiVak~kRViM~~dtY 389 (602)
+.+.++...+.+...|..|.+++- ...++++.+|-.+++|... .|.+ .|.|
T Consensus 399 ~~~~l~~~~~~~yl~ge~i~~~~~----------~g~~lv~~~g~~lG~~k~~----------~~~~---------kN~y 449 (456)
T 3m4x_A 399 PCLPITQKEWQSYTAGETFQRDGN----------QGWVLLVLDKIPVGFGKQV----------KGTV---------KNFF 449 (456)
T ss_dssp CEEEECHHHHHHHHHTCCEECSCC----------CEEEEEEETTEEEEEEEEE----------TTEE---------EECS
T ss_pred cEEEcCHHHHHHHhCCCCcccCCC----------CCEEEEEECCEeEEEEEee----------CCEE---------ecCC
Confidence 468899999999999999976431 2366778899888877652 4543 3789
Q ss_pred CCCcCC
Q 007467 390 PRKWGL 395 (602)
Q Consensus 390 P~~Wg~ 395 (602)
|+.|.+
T Consensus 450 p~~wR~ 455 (456)
T 3m4x_A 450 PKGLRF 455 (456)
T ss_dssp CGGGCC
T ss_pred Chhhcc
Confidence 999974
No 31
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1
Probab=33.78 E-value=12 Score=32.39 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHhcccccccCCCCCCC----C--------c--cceEEEEeccccccccccCCCc---------EEEE
Q 007467 112 NPSSHEVVAWIKRILRVEKTGHSGTLDPK----V--------T--GNLIVCIDRATRLVKSQQGAGK---------EYVC 168 (602)
Q Consensus 112 G~TSheVVa~VKriL~~kKvGHsGTLDP~----A--------T--GVL~V~IG~ATKLv~~l~~~~K---------eYva 168 (602)
||.+.+..+.++.+|....+|+-+|.|+- + . |.|.++..+.++.+..|...++ .|..
T Consensus 1 ~m~~~~~~~~~~~~l~~~~~~~LaT~~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~~ 80 (146)
T 2hq7_A 1 GMIDEKFLIESNELVESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKFAG 80 (146)
T ss_dssp --CCSHHHHHHHHHHHHCSEEEEEEECGGGCEEEEEEEEEEEETTTEEEEEEECCHHHHHHHHHCCEEEEEEECSSSSEE
T ss_pred CCccHHHHHHHHHHHhcCCEEEEEEECCCCCEEEEEEEEEEEcCCCEEEEEecCCCHHHHHHhhCCeEEEEEECCCCceE
Confidence 67778888999999999999999999852 1 1 5566666665555555543333 2333
Q ss_pred EEEEcCc--CCCHHHHHHHHHhcccc
Q 007467 169 VARLHDK--VPDVAKVARALEALTGA 192 (602)
Q Consensus 169 ~i~LG~~--t~s~e~L~~aL~~F~G~ 192 (602)
+.-.|.. +.+.+.+.+++..+.-.
T Consensus 81 v~v~G~a~~v~d~~~~~~~~~~~~~~ 106 (146)
T 2hq7_A 81 LMLVGTIEILHDRASKEMLWTDGCEI 106 (146)
T ss_dssp EEEEEEEEEECCHHHHHHHCCTTHHH
T ss_pred EEEEEEEEEEcCHHHHHHHHHHHHHH
Confidence 3333432 23455566665544433
No 32
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}
Probab=33.04 E-value=48 Score=29.38 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHhcccccccCCCCCCC---------C-----ccceEEEEeccccccccccCCCcEEEEEEE--------
Q 007467 114 SSHEVVAWIKRILRVEKTGHSGTLDPK---------V-----TGNLIVCIDRATRLVKSQQGAGKEYVCVAR-------- 171 (602)
Q Consensus 114 TSheVVa~VKriL~~kKvGHsGTLDP~---------A-----TGVL~V~IG~ATKLv~~l~~~~KeYva~i~-------- 171 (602)
+++++...+..+|...++|.-.|+|+- . .|.|.++.+...+.+.-|...++.-+|...
T Consensus 4 ~~~~l~~~~~~~l~~~~~~~LaT~~~d~~~~~pm~~~~~~d~~g~l~F~T~~~s~K~~~l~~np~v~l~~~~~~~~~~v~ 83 (147)
T 3dmb_A 4 DPKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFAS 83 (147)
T ss_dssp SHHHHHHHHHHHHHHHCEEEEEETTSSSCCCEEEEEECSSSSCCCEEEEECTTCTTHHHHTTCEEEEEEEECTTSSEEEE
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEEcCCCCceEeCccccccCCCceEEEEecCCcHHHHHHhhCCeEEEEEEcCCCCeEEE
Confidence 456999999999999999999999862 1 256777777766666666555443222211
Q ss_pred -EcCc--CCCHHHHHHHHHhcccccc
Q 007467 172 -LHDK--VPDVAKVARALEALTGAVF 194 (602)
Q Consensus 172 -LG~~--t~s~e~L~~aL~~F~G~I~ 194 (602)
.|.. +.+.+.+.+++..+...+|
T Consensus 84 v~G~a~~~~d~~~~~~~~~~~~~~~~ 109 (147)
T 3dmb_A 84 ISGSLREDTDPAVVDRLWNPYVAAWY 109 (147)
T ss_dssp EEEEEEECCCHHHHHHHCCHHHHHHC
T ss_pred EEEEEEEecCHHHHHHHhhHHHHHHc
Confidence 1111 2356777777665555544
No 33
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=29.21 E-value=39 Score=35.29 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=37.3
Q ss_pred hceeecCHHHHHHHHcCCcccCCc-cccccCccccCCEEEEEecCCcEEEEEEE
Q 007467 309 YKRLVVKDTTVNAICYGAKLMIPG-LLRFENDIEVGEEVVLMTTKGEAVALGIA 361 (602)
Q Consensus 309 lPrIvVkDsav~aI~nGakL~ipG-ilr~e~~Ie~ge~Vviit~kGElIALGia 361 (602)
+++|.|+....++|.+|-+.-..+ |.+... .|+.|.+++.+|+++|+|.+
T Consensus 5 ~~~~~l~~~~~~~~~~g~pwi~~~~i~~~~~---~G~~v~v~~~~g~~lg~g~~ 55 (393)
T 4dmg_A 5 VLRLVVKAGKERKLRNFYPNLYRDEIAAPPE---GVGVAEAVDAEGHFLAVGYY 55 (393)
T ss_dssp CCEEEECTTCCHHHHTTCCEECGGGEEECCS---SSEEEEEECTTCCEEEEEEE
T ss_pred CcEEEECcchHHHHhcCCCEEEHHHhcCcCC---CCCEEEEEcCCCCEEEEEEE
Confidence 789999999999999997654333 222221 27888889999999888765
No 34
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1
Probab=22.54 E-value=88 Score=28.56 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=56.2
Q ss_pred HHHHHhcccccccCCCCCC----CC--------ccceEEEEeccccccccccCCC----------c--------------
Q 007467 121 WIKRILRVEKTGHSGTLDP----KV--------TGNLIVCIDRATRLVKSQQGAG----------K-------------- 164 (602)
Q Consensus 121 ~VKriL~~kKvGHsGTLDP----~A--------TGVL~V~IG~ATKLv~~l~~~~----------K-------------- 164 (602)
.|..+|....+||-+|.|| .+ -|.|.+...++++.+..|...+ .
T Consensus 30 ei~~~L~~~~~~~Lat~~~dg~P~v~Pv~f~~~~~~lyfhta~~~~k~~~l~~np~V~~~v~~~~~~is~~~~~~~~~t~ 109 (178)
T 2fg9_A 30 RIESIILQADACFVGITDLEGNPYVVPMNFGYENDTLYLHSGPEGGKIEMLQRNNNVCITFSLGHKLVYQHKQVACSYSM 109 (178)
T ss_dssp HHHHHHHHCSCEEEEEECTTSCEEEEEECCEEETTEEEEEECSCSHHHHHHHHCCEEEEEEECCCEEEEEC----CEEEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcEEEEEEEEEEECCEEEEEcCCcchHHHHhhcCCcEEEEEEeCCceeeccCCCCCCCcc
Confidence 4555666778999999883 22 3567777776666655553221 1
Q ss_pred EEEEEEEEcCcC--CCHHHHHHHHHhccccccccCcchhhcccCCeEEEEEEEEEEEEec
Q 007467 165 EYVCVARLHDKV--PDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDV 222 (602)
Q Consensus 165 eYva~i~LG~~t--~s~e~L~~aL~~F~G~I~Q~PP~ySAVKr~lR~rtIY~ieLLe~d~ 222 (602)
.|..+.-.|... .+.+....++..|...+.+.+ +......+..+.+|.|.+.++..
T Consensus 110 ~y~sV~v~G~a~~v~d~~e~~~~l~~l~~~y~~~~--~~~~~~~~~~~~v~rI~i~~itg 167 (178)
T 2fg9_A 110 RSESAMCRGKVEFIEDMEEKRHALDIIMRHYTKDQ--FSYSDPAVRNVKVWKVPVDQMTG 167 (178)
T ss_dssp EEEEEEEEEECEEECSHHHHHHHHHHHHHTTCSSC--CCCCHHHHHTCEEEEEEEEEEEE
T ss_pred cEEEEEEEEEEEEECCHHHHHHHHHHHHHHhCCCC--CCcChHhhCCeEEEEEEeEEEEE
Confidence 366666677653 345566666666655544322 11111223345677777766543
No 35
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=22.43 E-value=1.2e+02 Score=31.20 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=38.1
Q ss_pred ceeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEEec
Q 007467 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364 (602)
Q Consensus 310 PrIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~ms 364 (602)
++|.|+....++|..|.+..-.+-+.+.. ..|+.|.+.+.+|.++++|...-.
T Consensus 2 ~~~~l~~~~~~~~~~~~pw~y~n~~~~~~--~~g~~v~v~~~~g~~l~~g~~~~~ 54 (385)
T 2b78_A 2 IKLMVGSFAEKKLKRGVQLLSSRDYPNLN--LDNQVVQLYSDADIFLGTAYLSKQ 54 (385)
T ss_dssp EEEECCHHHHHHHHHTCCEEEGGGSTTCC--CCSEEEEEECTTCCEEEEEEEEEE
T ss_pred ceEEECchHHHHHhcCCCeEEHHHhCCCC--CCCCEEEEEcCCCCEEEEEEECCC
Confidence 57899999999999998653332221111 568888888888999998887644
No 36
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=20.66 E-value=1e+02 Score=31.46 Aligned_cols=49 Identities=10% Similarity=-0.018 Sum_probs=36.3
Q ss_pred eeecCHHHHHHHHcCCcccCCccccccCccccCCEEEEEecCCcEEEEEEEE
Q 007467 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362 (602)
Q Consensus 311 rIvVkDsav~aI~nGakL~ipGilr~e~~Ie~ge~Vviit~kGElIALGia~ 362 (602)
+|.|+....++|.+|.+..-.+-+.+ ..++.| .|.+.+ +|+++++|...
T Consensus 2 ~~~l~~~~~~~~~~~~p~~yrn~~~~-~~~~~g-~v~v~~-~g~~l~~g~~~ 50 (382)
T 1wxx_A 2 RIQVNAKGAARLLSRHLWVFRRDVVS-GPETPG-LYPVYW-GRRFLALALYN 50 (382)
T ss_dssp CEEECHHHHHHHHTTCCEECGGGEEE-CCSSCE-EEEEEE-TTEEEEEEEEC
T ss_pred eEEECccHHHHHhcCCCeEEhhhhcc-CCCCCe-EEEEEE-CCEEEEEEEEC
Confidence 57889999999999987654444444 456677 777777 89888888764
Done!