RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007467
(602 letters)
>gnl|CDD|232971 TIGR00425, CBF5, rRNA pseudouridine synthase, putative. This
family, found in archaea and eukaryotes, includes the
only archaeal proteins markedly similar to bacterial
TruB, the tRNA pseudouridine 55 synthase. However, among
two related yeast proteins, the archaeal set matches
yeast YLR175w far better than YNL292w. The first, termed
centromere/microtubule binding protein 5 (CBF5), is an
apparent rRNA pseudouridine synthase, while the second
is the exclusive tRNA pseudouridine 55 synthase for both
cytosolic and mitochondrial compartments. It is unclear
whether archaeal proteins found by this model modify
tRNA, rRNA, or both [Protein synthesis, tRNA and rRNA
base modification].
Length = 322
Score = 513 bits (1323), Expect = 0.0
Identities = 197/326 (60%), Positives = 245/326 (75%), Gaps = 4/326 (1%)
Query: 69 LKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRV 128
LKN++ L V+ HYT + G +PLKR + +YI YG++NLDKP+ PSSHEVVAW++RIL V
Sbjct: 1 LKNFENLIVKEEHYTNIDYGCNPLKRDIEEYISYGVVNLDKPSGPSSHEVVAWVRRILNV 60
Query: 129 EKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEA 188
EKTGH GTLDPKVTG L VCI+RATRLVKSQQ A KEYVC+ RLH + + R L+
Sbjct: 61 EKTGHGGTLDPKVTGVLPVCIERATRLVKSQQEAPKEYVCLMRLHRDAKE-EDILRVLKE 119
Query: 189 LTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
TG +FQRPPL SAVKRQLR+RTIYES+LLE D V+F +SCEAGTY+R +CV +G
Sbjct: 120 FTGRIFQRPPLKSAVKRQLRVRTIYESELLEKDGKD--VLFRVSCEAGTYIRKLCVDIGE 177
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
LG G HMQELRR RSG GE D+MVT+HD++DA + DE+YLRR+I P+E LL
Sbjct: 178 ALGTGAHMQELRRTRSGCFGE-DDMVTLHDLLDAYVFWKEDGDESYLRRIIKPMEYLLRH 236
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVM 368
KR+VVKD+ V+AIC+GA LM+ G+ R E IE G+ VV++T KGEAVA+GIA M+T +
Sbjct: 237 LKRVVVKDSAVDAICHGADLMVRGIARLEKGIEKGDTVVVITLKGEAVAVGIALMSTKDI 296
Query: 369 ATCDHGVVARIKRVVMDRDTYPRKWG 394
A D GVVA +KRV+M+R TYPR W
Sbjct: 297 ANADKGVVADVKRVIMERGTYPRMWK 322
>gnl|CDD|211338 cd02572, PseudoU_synth_hDyskerin, Pseudouridine synthase, human
dyskerin like. This group consists of eukaryotic and
archeal pseudouridine synthases similar to human
dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila
melanogaster Mfl (minifly protein). Pseudouridine
synthases catalyze the isomerization of specific
uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi). No cofactor is required. S.
cerevisiae Cbf5 and human dyskerin are nucleolar
proteins that, with the help of guide RNAs, make the
hundreds of psueudouridnes present in rRNA and small
nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic
subunit of eukaryotic box H/ACA small nucleolar
ribonucleoprotein (snoRNP) particles. D. melanogaster
mfl hosts in its fourth intron, a box H/AC snoRNA gene.
In addition dyskerin is likely to have a structural role
in the telomerase complex. Mutations in human dyskerin
cause X-linked dyskeratosis congenitas. Mutations in
Drosophila Mfl results in miniflies that suffer
abnormalities.
Length = 182
Score = 377 bits (971), Expect = e-130
Identities = 146/183 (79%), Positives = 160/183 (87%), Gaps = 1/183 (0%)
Query: 101 RYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ 160
+YG+INLDKP+ PSSHEVVAWIKRIL VEKTGHSGTLDPKVTG L VCIDRATRLVKSQQ
Sbjct: 1 KYGVINLDKPSGPSSHEVVAWIKRILGVEKTGHSGTLDPKVTGCLPVCIDRATRLVKSQQ 60
Query: 161 GAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEY 220
AGKEYVCV RLHD V D KV R LE TGA+FQRPPLISAVKRQLR+RTIYESKLLEY
Sbjct: 61 EAGKEYVCVMRLHDDV-DEEKVRRVLEEFTGAIFQRPPLISAVKRQLRVRTIYESKLLEY 119
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVM 280
D +R LV+F +SCEAGTY+RT+CVH+GL+LGVG HMQELRR RSG E DNMVT+HDV+
Sbjct: 120 DGERRLVLFRVSCEAGTYIRTLCVHIGLLLGVGAHMQELRRTRSGPFSEEDNMVTLHDVL 179
Query: 281 DAQ 283
DAQ
Sbjct: 180 DAQ 182
>gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p;
Reviewed.
Length = 300
Score = 381 bits (980), Expect = e-129
Identities = 141/297 (47%), Positives = 203/297 (68%), Gaps = 4/297 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G P KRP+ + I++G++NLDKP P+SHEV AW++ IL VEK GH GTLDPKVTG L V
Sbjct: 8 GCPPEKRPIEELIKFGVVNLDKPPGPTSHEVAAWVRDILGVEKAGHGGTLDPKVTGVLPV 67
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+ +AT++V++ +GKEYVCV LH VP+ + + + TG ++Q+PPL SAVKR+L
Sbjct: 68 ALGKATKVVQALLESGKEYVCVMHLHGDVPE-EDIRKVFKEFTGEIYQKPPLKSAVKRRL 126
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R+RTIYE ++LE D R V+F + CE+GTY+R +C +GL LG G HMQELRR R+G
Sbjct: 127 RVRTIYELEILEID-GR-DVLFRVRCESGTYIRKLCHDIGLALGTGAHMQELRRTRTGPF 184
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E +++VT+ D+ DA + + DE LRRVI+P+E L+ ++++KD+ V+AI +GA
Sbjct: 185 TE-EDLVTLQDLADAYYFWKEDGDEEELRRVILPMEYALSHLPKIIIKDSAVDAIAHGAP 243
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
L PG+ + E I+ G+ V + T KGE VALG A M + + + G+V ++RV M
Sbjct: 244 LYAPGIAKLEKGIKKGDLVAVFTLKGELVALGKALMDSDEILKAEKGIVVDLERVFM 300
>gnl|CDD|223208 COG0130, TruB, Pseudouridine synthase [Translation, ribosomal
structure and biogenesis].
Length = 271
Score = 274 bits (703), Expect = 2e-88
Identities = 135/297 (45%), Positives = 170/297 (57%), Gaps = 31/297 (10%)
Query: 89 YSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVC 148
Y P KRP+ YI G+INLDKP P+SHEVVAW+KRIL VEK GH GTLDP TG L +C
Sbjct: 4 YYPEKRPIEIYI--GVINLDKPPGPTSHEVVAWVKRILGVEKAGHGGTLDPLATGVLPIC 61
Query: 149 IDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLR 208
+ AT+LV+ A KEYV RL D+ +V ALEA TG ++Q PP+ SAVKR++
Sbjct: 62 LGEATKLVQYLLDADKEYVATVRLGDQTDSEEEVRAALEAFTGEIYQIPPMFSAVKREVE 121
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
R I LLE D DR+LV + C GTY+RT+ LG LG G HM ELRR R G
Sbjct: 122 RRKITIYDLLELDFDRNLVTLRVECSKGTYIRTLARDLGEALGCGAHMSELRRTRVGPFS 181
Query: 269 ENDNM-VTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
E D + + + D +DA E+ LR ++ PLE L+ RLV+KD+ NAI YGAK
Sbjct: 182 EEDAVTLELLDELDA---------ESLLRLLL-PLESALSDLPRLVLKDSAANAIKYGAK 231
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM 384
+ DIE+G V + T KG +ALG + + KRV M
Sbjct: 232 PGL-------LDIELGGLVRVYTAKGLGIALGEID-----------EEGLKPKRVFM 270
>gnl|CDD|211323 cd00506, PseudoU_synth_TruB_like, Pseudouridine synthase, TruB
family. This group consists of eukaryotic, bacterial
and archeal pseudouridine synthases similar to
Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M.
tuberculosis TruB, S. cerevisiae Cbf5 and human
dyskerin. Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi). No cofactors are
required. E. coli TruB, M. tuberculosis TruB and S.
cerevisiae Pus4, make psi55 in the T loop of tRNAs.
Pus4 catalyses the formation of psi55 in both
cytoplasmic and mitochondrial tRNAs. Psi55 is almost
universally conserved. S. cerevisiae Cbf5 and human
dyskerin are nucleolar proteins that, with the help of
guide RNAs, make the hundreds of psueudouridnes present
in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin
is the catalytic subunit of eukaryotic box H/ACA small
nucleolar ribonucleoprotein (snoRNP) particles.
Mutations in human dyskerin cause X-linked dyskeratosis
congenitas.
Length = 210
Score = 211 bits (538), Expect = 8e-65
Identities = 85/211 (40%), Positives = 112/211 (53%), Gaps = 35/211 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G+ +DKP PSSH+VV I+RI EK GH GTLDP TG L+V I +AT+L+K A
Sbjct: 1 GLFAVDKPQGPSSHDVVDTIRRIFLAEKVGHGGTLDPFATGVLVVGIGKATKLLKHLLAA 60
Query: 163 GKEYVCVARLH-------------DKVPDV----AKVARALEALTGAVFQRPPLISAVKR 205
K+Y + RL ++ P ++ RALE LTG + Q PPL SAVKR
Sbjct: 61 TKDYTAIGRLGQATDTFDATGQVIEETPYDHITHEQLERALETLTGDIQQVPPLYSAVKR 120
Query: 206 Q-----------------LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
Q R TIYE + ++ L+ + CE GTY+RT+ LGL
Sbjct: 121 QGQRAYELARRGLLVPDEARPPTIYELLCIRFNPPHFLLEVEVVCETGTYIRTLIHDLGL 180
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDV 279
LGVG H+ ELRR R G + +N VT+H +
Sbjct: 181 ELGVGAHVTELRRTRVGPF-KVENAVTLHHL 210
>gnl|CDD|211339 cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia
coli TruB like. This group consists of bacterial
pseudouridine synthases similar to E. coli TruB and
Mycobacterium tuberculosis TruB. Pseudouridine synthases
catalyze the isomerization of specific uridines in an
RNA molecule to pseudouridines (5-ribosyluracil, psi).
E. coli TruB and M. tuberculosis TruB make psi55 in the
T loop of tRNAs. Psi55 is nearly universally conserved.
E. coli TruB is not inhibited by RNA containing
5-fluorouridine.
Length = 213
Score = 167 bits (426), Expect = 2e-48
Identities = 70/207 (33%), Positives = 97/207 (46%), Gaps = 35/207 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ LDKPA +SH+VV ++R+L +K GH+GTLDP TG L + + AT+L + A
Sbjct: 1 GILLLDKPAGLTSHDVVQKVRRLLGTKKVGHTGTLDPLATGVLPIALGEATKLSQYLLDA 60
Query: 163 GKEYVCVARL-----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205
K Y RL ++ AL+A TG + Q PP+ SAVK
Sbjct: 61 DKTYRATVRLGEATDTDDAEGEIIETSPPPRLTEEEIEAALKAFTGEIEQVPPMYSAVKV 120
Query: 206 Q---------------LRIR--TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R TIY +LL +D + F + C GTY+R++ LG
Sbjct: 121 DGKRLYELARAGEEVERPPRKVTIYSLELLSFDPENPEADFEVHCSKGTYIRSLARDLGK 180
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVT 275
LG G H+ LRR RSG + +T
Sbjct: 181 ALGCGAHLSALRRTRSGPFTL-EQAIT 206
>gnl|CDD|216540 pfam01509, TruB_N, TruB family pseudouridylate synthase (N terminal
domain). Members of this family are involved in
modifying bases in RNA molecules. They carry out the
conversion of uracil bases to pseudouridine. This family
includes TruB, a pseudouridylate synthase that
specifically converts uracil 55 to pseudouridine in most
tRNAs. This family also includes Cbf5p that modifies
rRNA.
Length = 149
Score = 131 bits (333), Expect = 4e-36
Identities = 53/151 (35%), Positives = 69/151 (45%), Gaps = 36/151 (23%)
Query: 123 KRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKV------ 176
KRIL +K GH+GTLDP TG L VC+ +AT+L++ A KEY RL
Sbjct: 1 KRILGAKKVGHTGTLDPLATGVLPVCVGKATKLLQYLLDADKEYRATIRLGVATDTLDAE 60
Query: 177 -----------PDVAKVARALEALTGAVFQRPPLISAVK-----------------RQLR 208
K+ L + TG + Q PP+ SAVK R R
Sbjct: 61 GEIVEEPPVDHITEEKIEEVLASFTGEIEQVPPMYSAVKVNGKRLYELAREGIEVERPPR 120
Query: 209 IRTIYESKLLEYDVDRHLVVFWISCEAGTYV 239
TIY +LLE+D+ V F +SC GTY+
Sbjct: 121 PVTIYSLELLEFDLPE--VTFEVSCSKGTYI 149
>gnl|CDD|129523 TIGR00431, TruB, tRNA pseudouridine(55) synthase. TruB, the tRNA
pseudouridine 55 synthase, converts uracil to
pseudouridine in the T loop of most tRNAs in all three
domains of life. This model is built on a seed alignment
of bacterial proteins only. Saccharomyces cerevisiae
protein YNL292w (Pus4) has been shown to be the
pseudouridine 55 synthase of both cytosolic and
mitochondrial compartments, active at no other position
on tRNA and the only enzyme active at that position in
the species. A distinct yeast protein YLR175w,
(centromere/microtubule-binding protein CBF5) is an rRNA
pseudouridine synthase, and the archaeal set is much
more similar to CBF5 than to Pus4. It is unclear whether
the archaeal proteins found by this model are tRNA
pseudouridine 55 synthases like TruB, rRNA pseudouridine
synthases like CBF5, or (as suggested by the absence of
paralogs in the Archaea) both. CBF5 likely has
additional, eukaryotic-specific functions. The trusted
cutoff is set above the scores for the archaeal homologs
of unknown function, so yeast Pus4p scores between
trusted and noise [Protein synthesis, tRNA and rRNA base
modification].
Length = 209
Score = 132 bits (333), Expect = 2e-35
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 35/196 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP +S + +A ++R+L V+K GH+GTLDP TG L + + +AT+L
Sbjct: 3 GVLLLDKPQGMTSFDALAKVRRLLNVKKVGHTGTLDPFATGVLPILVGKATKLSPYLTDL 62
Query: 163 GKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK-- 204
KEY RL P V AL G + Q PP+ SA+K
Sbjct: 63 DKEYRAEIRLGVRTDTLDPDGQIVETRPVNPTTEDVEAALPTFRGEIEQIPPMYSALKVN 122
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R T+Y+ + L+Y+ + + C GTY+RT+ LG
Sbjct: 123 GKRLYEYARQGIEVERKARPVTVYDLQFLKYEGPE--LTLEVHCSKGTYIRTLARDLGEK 180
Query: 250 LGVGGHMQELRRVRSG 265
LG G ++ LRR G
Sbjct: 181 LGCGAYVSHLRRTAVG 196
>gnl|CDD|234959 PRK01550, truB, tRNA pseudouridine synthase B; Provisional.
Length = 304
Score = 135 bits (341), Expect = 2e-35
Identities = 81/295 (27%), Positives = 133/295 (45%), Gaps = 52/295 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ L KP +SH+ V +++ILR +K GH+GTLDP+V+G L +C+ RAT++ +
Sbjct: 3 GVLLLHKPRGMTSHDCVFKLRKILRTKKVGHTGTLDPEVSGVLPICVGRATKIAEYLTDE 62
Query: 163 GKEY------------------VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
GK Y V + D+ ++ AL +LTG + Q PP+ SAVK
Sbjct: 63 GKTYEGEVTLGFSTTTEDADGEVVETKPVDRPITREEIEAALASLTGTIEQIPPMYSAVK 122
Query: 205 -----------------RQLRIRTIYESKLL--EYDVDRHLVVFW--ISCEAGTYVRTMC 243
R +R TI+E LL D + F ++C GTYVRT+
Sbjct: 123 VNGKKLYEYARAGIEVERPVRQITIHEFVLLDSREDFEGETQSFRFRVTCSKGTYVRTLA 182
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V +G LG HM L R SG ++ +T ++ + + ++ P++
Sbjct: 183 VMIGEKLGYPAHMSHLVRTASGGF-TLEDCLTFEEI-------EENVQAGTVESILYPID 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL 358
L+ +LV+ + + GA L P + E E +V++ +A+
Sbjct: 235 RALSHLPKLVIDEKQAEKVKNGAFLKNPLFITVEA-----EPIVVLDYNDRCLAI 284
>gnl|CDD|235333 PRK05033, truB, tRNA pseudouridine synthase B; Provisional.
Length = 312
Score = 123 bits (312), Expect = 2e-31
Identities = 82/322 (25%), Positives = 134/322 (41%), Gaps = 58/322 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQ-- 160
G++ LDKP SS++ + +KR+ K GH+G LDP TG L +C+ AT+ SQ
Sbjct: 11 GVLLLDKPQGMSSNDALQKVKRLFNANKAGHTGALDPLATGMLPICLGEATKF--SQYLL 68
Query: 161 GAGKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK 204
+ K Y ARL ++ ALE G + Q P + SA+K
Sbjct: 69 DSDKRYRVTARLGQRTDTSDADGEVVEERPVTLSAEQLEAALEKFRGDIEQVPSMYSALK 128
Query: 205 RQLR---------------IR--TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLG 247
Q + R TIYE +L+ ++ D + + C GTY+RT+ LG
Sbjct: 129 YQGQPLYEYARQGIEVEREARPITIYELELIRFEGDE--LELEVHCSKGTYIRTLVDDLG 186
Query: 248 LILGVGGHMQELRRVRSGILGENDNMVTMHDV--MDAQWLYDNYRDEAYLRRVIMPLEVL 305
LG G H+ LRR + + MVT+ + + Q L +++P++
Sbjct: 187 EKLGCGAHVIYLRRTQVAPY-PLERMVTLEQLEALVEQAEQQEIPPAELLDPLLLPMDSA 245
Query: 306 LTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTT 365
++ + + + + G + + G E +V +T +GI E+
Sbjct: 246 VSDLPEVNLPEESAYYFKQGQPVRVSGAPL--------EGLVRVTEGENGKFIGIGEID- 296
Query: 366 AVMATCDHGVVARIKRVVMDRD 387
D G VA KR+V++
Sbjct: 297 ------DDGRVAP-KRLVVEYP 311
>gnl|CDD|203846 pfam08068, DKCLD, DKCLD (NUC011) domain. This is a TruB_N/PUA
domain associated N-terminal domain of Dyskerin-like
proteins.
Length = 59
Score = 113 bits (285), Expect = 1e-30
Identities = 44/59 (74%), Positives = 52/59 (88%)
Query: 61 DTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVV 119
DTS+WP+LLKNYD LNVR+ HYTP P G SPLKRP+ +YI+YG+INLDKP+ PSSHEVV
Sbjct: 1 DTSEWPLLLKNYDELNVRSEHYTPPPYGCSPLKRPIEEYIKYGVINLDKPSGPSSHEVV 59
>gnl|CDD|235042 PRK02484, truB, tRNA pseudouridine synthase B; Provisional.
Length = 294
Score = 119 bits (300), Expect = 6e-30
Identities = 79/268 (29%), Positives = 118/268 (44%), Gaps = 48/268 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GIINL K A +SH+ V +++IL+ +K GH GTLDP V G L + + +ATRL++ A
Sbjct: 4 GIINLKKEAGMTSHDAVFKLRKILQTKKIGHGGTLDPDVVGVLPIAVGKATRLIEYMTEA 63
Query: 163 GKEYV-----------------CVARLHDKVP-DVAKVARALEALTGAVFQRPPLISAVK 204
GK Y VA P +V +A+ + TG + Q PP+ SAVK
Sbjct: 64 GKVYEGEITLGYSTTTEDASGEVVAETPLTQPLTEEEVDQAMTSFTGKITQIPPMYSAVK 123
Query: 205 -----------------RQLRIRTIYESKL---LEYDVD-RHLVVFWISCEAGTYVRTMC 243
R R TIY+ + L +D D F ++C GTYVRT+
Sbjct: 124 VNGKKLYEYARAGEEVERPKRQVTIYQFERTSPLSFDEDGLCRFSFRVACSKGTYVRTLA 183
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
V LG LG HM L R S L + VT+ ++ + EA + P+E
Sbjct: 184 VDLGEKLGYAAHMSFLTRTASAGL-TLEQAVTLEEIAEKV--------EAGELSFLQPIE 234
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIP 331
+ ++ + + +G + +
Sbjct: 235 YGVADLPKVDLTPEQFTEVSFGRFISLD 262
>gnl|CDD|235113 PRK03287, truB, tRNA pseudouridine synthase B; Provisional.
Length = 298
Score = 118 bits (299), Expect = 9e-30
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 36/199 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ +DKPA +SH+VVA +R+ K GH+GTLDP TG L++ ++RAT+L+
Sbjct: 10 GLVVVDKPAGMTSHDVVARCRRLFGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLTLT 69
Query: 163 GKEYVCVARL------HDKVPDV-----------AKVARALEALTGAVFQRPPLISAVK- 204
K Y RL D +V +A A+ ALTG + Q P +SA+K
Sbjct: 70 DKSYTATIRLGQATTTDDAEGEVLASADASAVTDEAIAAAVAALTGEIMQVPSAVSAIKV 129
Query: 205 ---R-----------QLRIRTIYESKLLEYDVDRH----LVVFWISCEAGTYVRTMCVHL 246
R +L R + S+ V R + + C +GTY+R + L
Sbjct: 130 DGKRAYARVRAGEEVELPARPVTVSRFEVLAVRRDGDFIDLDVEVDCSSGTYIRALARDL 189
Query: 247 GLILGVGGHMQELRRVRSG 265
G LGVGGH+ LRR R G
Sbjct: 190 GAALGVGGHLTALRRTRVG 208
>gnl|CDD|178886 PRK00130, truB, tRNA pseudouridine synthase B; Provisional.
Length = 290
Score = 117 bits (295), Expect = 3e-29
Identities = 75/294 (25%), Positives = 138/294 (46%), Gaps = 51/294 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+N+ KP +S +VV I++I +++K GH+GTLDP +G L VC+ +AT++V
Sbjct: 3 GILNILKPPGMTSFDVVRKIRKIAKIKKVGHTGTLDPLASGVLPVCLGKATKIVDYLMEG 62
Query: 163 GKEYVCVARL------HDKVPDVAK-----------VARALEALTGAVFQRPPLISAVK- 204
K Y +L +D+ ++ K + A+ + G + Q PP+ SA+K
Sbjct: 63 KKTYRAEIKLGVETDTYDREGEILKEKEVSHLTEEEIREAILSFQGEIDQVPPMYSALKI 122
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
R+ R TIY+ ++LE D+ V+F + C GTY+R++C +G
Sbjct: 123 NGKKLYELARQGIEVEREARKITIYDIEILEIDLPY--VIFDVKCSKGTYIRSLCFDIGE 180
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTS 308
L G +M L R +G +N +T+ D+ +E + I+P++ L
Sbjct: 181 KLNCGAYMWNLIRTETGPFNI-ENSITLEDL-----------NEENIEDYIIPIDKALKH 228
Query: 309 YKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362
Y ++ + + + G K+ R ++IE + + + + + +G+
Sbjct: 229 YPKVSLDEKFEKLLLNGVKI---KDRRLLDNIEENKLYRVYDEENKFIGIGMKN 279
>gnl|CDD|235442 PRK05389, truB, tRNA pseudouridine synthase B; Provisional.
Length = 305
Score = 115 bits (289), Expect = 2e-28
Identities = 85/296 (28%), Positives = 117/296 (39%), Gaps = 53/296 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G + LDKPA +S E V+ +K + +K GH+GTLDP +G L + + AT+ V
Sbjct: 14 GWLILDKPAGMTSTEAVSKVKWLFDAQKAGHAGTLDPLASGVLPIALGEATKTVPYVMDG 73
Query: 163 GKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y D P ++ AL A TG + Q PP SA+K
Sbjct: 74 TKRYRFTVAWGEERDTDDLEGEVTATSDVRPTDEEIRAALPAFTGEIMQVPPQFSAIKID 133
Query: 205 ------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHL 246
R + I + L+E D VF + C GTYVR++ L
Sbjct: 134 GERAYDLAREGETVELPARPVEIDRL---TLVERP-DADHAVFEVECGKGTYVRSLARDL 189
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
G LG GH+ LRR R G E D +T+ + A L +++P+E L
Sbjct: 190 GRALGCYGHIAALRRTRVGPFTEED-AITLEKLEAL-------ARFAALDALLLPVETAL 241
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAE 362
L + D + G P LLR D + E T G VALG
Sbjct: 242 DDLPALALTDEQAARLRQGN----PVLLR-GRDAPLPEAEAYATAGGRLVALGEIR 292
>gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional.
Length = 295
Score = 109 bits (274), Expect = 2e-26
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 36/204 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G +NLDKPA +SH+ VA ++R+LR+++ GH GTLDP TG L + + +ATRL+ G
Sbjct: 4 GFLNLDKPAGLTSHDCVARLRRLLRLKRVGHGGTLDPAATGVLPIALGKATRLLPYLPG- 62
Query: 163 GKEYVCVARL---------------HDKVPD--VAKVARALEALTGAVFQRPPLISAVK- 204
K Y R P +A++ AL G + QRPP SA++
Sbjct: 63 EKTYRGTIRFGVRTSTDDLQGEILSSQPWPHLSLAEIETALPQFRGKIEQRPPQYSAIQV 122
Query: 205 ---------RQ-------LRIRTIYESKLLEYD-VDRHLVVFWISCEAGTYVRTMCVHLG 247
R+ R TI+ +LL++ D+ + I C AGTY+R++ LG
Sbjct: 123 DGERLYALARRGETMELPARTVTIFRLQLLDWRPGDQPELDLEIHCGAGTYIRSLARDLG 182
Query: 248 LILGVGGHMQELRRVRSGILGEND 271
+LG GG + LRR +S
Sbjct: 183 AVLGTGGTLAALRRTQSLGFHLAQ 206
>gnl|CDD|234986 PRK01851, truB, tRNA pseudouridine synthase B; Provisional.
Length = 303
Score = 108 bits (272), Expect = 4e-26
Identities = 85/300 (28%), Positives = 129/300 (43%), Gaps = 53/300 (17%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS++ + KR+LR +K GH+GTLDP TG L +C AT+ + A
Sbjct: 17 GVLLLDKPLGLSSNDALQRAKRLLRAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDA 76
Query: 163 GKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y RL D A + AL TG + Q PP+ SA+K
Sbjct: 77 DKTYEATLRLGVRTSTGDAEGEVLATRPVDCDPAALEAALARFTGEIRQVPPMYSALKKD 136
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R TI+ LL D+ V ++C GTY+RT+ +G
Sbjct: 137 GKPLYEYARAGITVEREARDVTIHALDLLACDLPD--VTIRVTCSKGTYIRTLAEDIGEA 194
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G H+ LRR G L + VT+ + ++A DEA ++ P++ LL+++
Sbjct: 195 LGCGAHLTALRRTGVGGLTL-EQAVTL-EALEAA-------DEAERDALLAPVDALLSTF 245
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
R+ + A + G +D+ V + LG+A V+A
Sbjct: 246 PRVTLDA-------DAAGRFLHGQRLRLSDLPDAPRVRVYD--DPGRLLGVARWQEGVLA 296
>gnl|CDD|179199 PRK00989, truB, tRNA pseudouridine synthase B; Provisional.
Length = 230
Score = 101 bits (253), Expect = 3e-24
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 45/201 (22%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA-TRLVKSQQG 161
GI+ +DKP +S ++ + +++ V+K GH+GTLDP TG +++ I R TRL
Sbjct: 10 GILLVDKPQGRTSFSLIRSLTKLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDILLF 69
Query: 162 AGKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVKR 205
KEY VA L K+P + +V A G + Q PP+ SA K
Sbjct: 70 EDKEYAAVAHLGTTTDSYDCDGKIVGRSKKIPTLEEVLSAASYFQGEIQQVPPMFSAKKV 129
Query: 206 QLRIRTIYESKLLEY-----DVDRHLVV----------------FWISCEAGTYVRTMCV 244
Q + KL EY ++R F + C GTY+R++
Sbjct: 130 QGK-------KLYEYARQGLSIERRPSTVQVHLQLTKYEYPLLHFVVQCSKGTYIRSIAH 182
Query: 245 HLGLILGVGGHMQELRRVRSG 265
LG +LG G +++ELRR+RSG
Sbjct: 183 ELGNMLGCGAYLEELRRLRSG 203
>gnl|CDD|172614 PRK14124, PRK14124, tRNA pseudouridine synthase B; Provisional.
Length = 308
Score = 95.6 bits (238), Expect = 1e-21
Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 49/304 (16%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+++G + KP P+SH+VV +++ L+ K GH+GTLDP TG LIV +++ATRL++
Sbjct: 1 MKHGFLVAYKPKGPTSHDVVDEVRKKLKTRKVGHAGTLDPFATGVLIVGVNKATRLLEYL 60
Query: 160 QGAGKEYVCVARL------HDKVPDV----------AKVARALEALTGAVFQRPPLISAV 203
+ K Y RL D +V ++ A+ + G Q PP SA
Sbjct: 61 KNEKKVYYVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYKQVPPAYSAK 120
Query: 204 K----------RQLRI-------RTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHL 246
K R+ +I IYE + + ++ V F + GTY+R++C+ +
Sbjct: 121 KYKGERLYKLAREGKIINLPPKEVKIYE--IWDISIEGPDVSFRVEVSPGTYIRSLCMDI 178
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
G LG G EL R+ G + D+ +++ +E + I+P+E +L
Sbjct: 179 GYKLGCGATAVELVRLSVG----------KFSIEDSINVFEVSPEE--IENRIIPMEEIL 226
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
++V+ + I G+++ + + ++N + + V + +G +A+ AE ++
Sbjct: 227 -DLPKVVIHQESTEKILNGSQIYLEMVKEWDN-FKKDDVVRVFDEEGRLLAIARAERNSS 284
Query: 367 VMAT 370
+ T
Sbjct: 285 FLET 288
>gnl|CDD|179870 PRK04642, truB, tRNA pseudouridine synthase B; Provisional.
Length = 300
Score = 94.1 bits (234), Expect = 3e-21
Identities = 76/273 (27%), Positives = 122/273 (44%), Gaps = 50/273 (18%)
Query: 94 RPLVDYIR-YGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRA 152
P + Y R GI+ LDKPA SS+ + +R+LR EK GH+G+LDP TG L +C A
Sbjct: 1 MPRIAYRRLDGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEA 60
Query: 153 TRLVKSQQGAGKEY---VCVARLHDK------------VPDV--AKVARALEALTGAVFQ 195
T++ G+ K Y + + D VPD+ A + AL L G + Q
Sbjct: 61 TKIAGLLLGSAKAYDAEIVLGVTTDTDDADGQVLRERPVPDLSAAALQAALAPLIGRIRQ 120
Query: 196 RPPLISAVK--------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEA 235
R P+ SA+K R++ + I ++L Y R + ++C +
Sbjct: 121 RAPIYSALKQGGEPLYAKARRGEVIEAPVREVEVHAI---EVLGYAAPR--LRLRVTCGS 175
Query: 236 GTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYL 295
GTY+R++ LG +LG G H+ LRR+ M+T+ + + + + L
Sbjct: 176 GTYIRSLARDLGEVLGCGAHIAALRRLWVEPF-RAPQMITLEAL---EAALEAGAEADTL 231
Query: 296 RRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKL 328
++PL L + R+ + T G +L
Sbjct: 232 ---LLPLAAGLADFPRIELDATLAARFRMGQRL 261
>gnl|CDD|201816 pfam01472, PUA, PUA domain. The PUA domain named after
Pseudouridine synthase and Archaeosine transglycosylase,
was detected in archaeal and eukaryotic pseudouridine
synthases, archaeal archaeosine synthases, a family of
predicted ATPases that may be involved in RNA
modification, a family of predicted archaeal and
bacterial rRNA methylases. Additionally, the PUA domain
was detected in a family of eukaryotic proteins that
also contain a domain homologous to the translation
initiation factor eIF1/SUI1; these proteins may comprise
a novel type of translation factors. Unexpectedly, the
PUA domain was detected also in bacterial and yeast
glutamate kinases; this is compatible with the
demonstrated role of these enzymes in the regulation of
the expression of other genes. It is predicted that the
PUA domain is an RNA binding domain.
Length = 74
Score = 81.0 bits (201), Expect = 6e-19
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
R+VV D V AI GA L+ PG++ + D G+EVV++T KGE VA+G+A ++ MA
Sbjct: 1 GRVVVDDGAVEAILNGASLLAPGVVEVDGDFRRGDEVVVVTEKGELVAVGLANYSSEEMA 60
Query: 370 TCDHGVVARIKRVV 383
G +++RV+
Sbjct: 61 KIKGGKAVKVRRVL 74
>gnl|CDD|184522 PRK14123, PRK14123, tRNA pseudouridine synthase B; Provisional.
Length = 305
Score = 85.6 bits (212), Expect = 3e-18
Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 48/265 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ + K +SH+VV +++IL+ +K GH+GTLDP+V G L VCI ATR+
Sbjct: 4 GILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYVMDM 63
Query: 163 GKEYVCVARL------HDKVPDVAK-------------VARALEALTGAVFQRPPLISAV 203
GK Y + D+ D + + R LE G + Q PP+ S+V
Sbjct: 64 GKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLEQFKGIIEQIPPMYSSV 123
Query: 204 K--------------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMC 243
K R++ I+ I L++ + + C GTY+RT+
Sbjct: 124 KVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIRTLA 183
Query: 244 VHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLE 303
+G+ LG HM +L R+ SG D++ T+ + ++ L+ + PLE
Sbjct: 184 TDIGVKLGFPAHMSKLTRIESGGFVLKDSL-TLEQI-------KELHEQDSLQNKLFPLE 235
Query: 304 VLLTSYKRLVVKDTTVNA-ICYGAK 327
L + +KD+ + I G K
Sbjct: 236 YGLKGLPSIKIKDSHIKKRILNGQK 260
>gnl|CDD|134035 PRK00020, truB, tRNA pseudouridine synthase B; Provisional.
Length = 244
Score = 83.1 bits (205), Expect = 6e-18
Identities = 61/199 (30%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS+ + KR + K GH+GTLDP TG L+ C+ RAT++ A
Sbjct: 11 GVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTLDPFATGLLVCCMGRATKISGRMLEA 70
Query: 163 GKEYVC-----------------VARLHDKVPDVAKVA--RALEALTGAVFQRPPLISAV 203
K Y VAR D V + A L G + Q PP+ SA+
Sbjct: 71 DKTYQATLQFGEETDSGDLTGHIVARAPDGFAGVEEAALRDVLSRFVGTIEQIPPMYSAL 130
Query: 204 KRQ-----------------LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHL 246
KR R TI +LL + + + ++C GTY+RT+ +
Sbjct: 131 KRDGKPLYEYARAGIELDRPPRQVTIRHIELLSFSGMQAQID--VACSKGTYIRTLAQDI 188
Query: 247 GLILGVGGHMQELRRVRSG 265
G LG H+ LRR G
Sbjct: 189 GRALGCHAHLAALRRTHVG 207
>gnl|CDD|179300 PRK01528, truB, tRNA pseudouridine synthase B; Provisional.
Length = 292
Score = 80.0 bits (197), Expect = 2e-16
Identities = 77/288 (26%), Positives = 121/288 (42%), Gaps = 50/288 (17%)
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
+N+ KP SS ++V+ +K+IL K GH+GTLD + G L + + AT+LV+ A K
Sbjct: 6 LNIYKPRGISSAKLVSIVKKILGKVKIGHAGTLDVEAEGVLPLAVGEATKLVQLLIDAKK 65
Query: 165 EYV----------------CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKR--- 205
Y+ V D +P + G + Q PP SA+K
Sbjct: 66 TYIFTVKFGKQTDSGDYAGKVIATKDYIPSKEEAYAVCSKFIGNITQIPPAFSALKVNGV 125
Query: 206 ------------QLRIR--TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILG 251
+L+ R TIY+ K L +D ++ C GTY+RT+ L L L
Sbjct: 126 RAYKLAREGKEVELKPRNITIYDLKCLNFDEKNATATYYTECSKGTYIRTLAEDLALSLQ 185
Query: 252 VGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKR 311
G + ELRR + GI E + + + + + N +E ++ +E +L
Sbjct: 186 SLGFVIELRRTQVGIFKEENAI----RIKSSDAITKNSLEEKSIK-----IEAILDDILV 236
Query: 312 LVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALG 359
L D I YG K L +E D+ + + KG +A+G
Sbjct: 237 LDATDEQAQKIKYGQKC----LFDYEKDV----NFLWVRYKGVLLAIG 276
>gnl|CDD|237834 PRK14846, truB, tRNA pseudouridine synthase B; Provisional.
Length = 345
Score = 78.1 bits (192), Expect = 1e-15
Identities = 72/268 (26%), Positives = 110/268 (41%), Gaps = 46/268 (17%)
Query: 105 INLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGK 164
+N+ KP SS ++V+ +K+IL K GH+GTLD + G L + AT+L+ A K
Sbjct: 6 LNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIHLLIDARK 65
Query: 165 EYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK---- 204
Y+ + D +P + G V Q PP SA+K
Sbjct: 66 TYIFTVKFGMQTNSGDCAGKVIATKDCIPSQEEAYAVCSKFIGNVTQIPPAFSALKVNGV 125
Query: 205 -----------RQLRIR--TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILG 251
+L+ R TIY+ K L +D ++ C GTY+RT+ L L L
Sbjct: 126 RAYKLAREGKKVELKPRNITIYDLKCLNFDEKNATATYYTECSKGTYIRTLAEDLALSLQ 185
Query: 252 VGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKR 311
G + ELRR + GI E + + + + N +E ++ +E +L
Sbjct: 186 SLGFVIELRRTQVGIFKEENAI----RIKSPDEITKNALEEKSIK-----IEAILDDILV 236
Query: 312 LVVKDTTVNAICYGAKLMIPGLLRFEND 339
L D+ I YG K L +E D
Sbjct: 237 LDATDSQAQQIKYGQKC----LFNYEKD 260
>gnl|CDD|214635 smart00359, PUA, Putative RNA-binding Domain in PseudoUridine
synthase and Archaeosine transglycosylase.
Length = 76
Score = 69.2 bits (170), Expect = 8e-15
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
++VV D AI GA L+ PG++R + DI+ G+ VV++ KGE + +G+A M++ +A
Sbjct: 1 GKVVVDDGAEKAILNGASLLAPGVVRVDGDIKEGDVVVIVDEKGEPLGIGLANMSSEEIA 60
Query: 370 TCD-HGVVARIKRVVM 384
G+ +++R VM
Sbjct: 61 RIKGKGLAVKVRRAVM 76
>gnl|CDD|184521 PRK14122, PRK14122, tRNA pseudouridine synthase B; Provisional.
Length = 312
Score = 69.8 bits (171), Expect = 6e-13
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 104 IINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 163
+ +DKP +SH+VV +R L + GH+GTLDP TG L++C D +T+LV
Sbjct: 3 VYAVDKPLGLTSHDVVNRARRALGTRRVGHTGTLDPLATGVLVLCTDDSTKLVPFLSAED 62
Query: 164 KEYVCVARLHDKVP-----------------DVAKVARALEALTGAVFQRPPLISAVKR 205
KEY+ P D + AL G Q PP SA+K
Sbjct: 63 KEYLAWVSFGATTPTLDAEGPISEEAPVSPLDEKDLEAALPGFLGLTEQVPPQYSAIKV 121
Score = 31.7 bits (72), Expect = 1.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 235 AGTYVRTMCVHLGLILGVGGHMQELRRVRSG 265
+GTYVR+ LG LGV H+ L R R G
Sbjct: 200 SGTYVRSFARDLGAALGVPAHLSGLVRTRVG 230
>gnl|CDD|179739 PRK04099, truB, tRNA pseudouridine synthase B; Provisional.
Length = 273
Score = 68.4 bits (168), Expect = 9e-13
Identities = 63/256 (24%), Positives = 98/256 (38%), Gaps = 64/256 (25%)
Query: 109 KPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
KPA SS+ ++ +KR V+K G SGTLDP G LIV + T+L + + K Y
Sbjct: 9 KPAGMSSNAFLSRLKRKYGVKKAGFSGTLDPFAKGVLIVAFGQYTKLFRFLKKTPKTYRA 68
Query: 169 VARLHDKVP----------------DVAKVARALEALTGAVFQRPPLISAVKRQLR---- 208
L P D + + L++L G + PP SA K +
Sbjct: 69 TLWLGASSPSLDIENIESIQIIKPFDKDLIEKILKSLQGEISYTPPKFSAKKINGKRAYE 128
Query: 209 -------------IRTIYESKLLEYDVDRH-LVVFWISCEAGTYVRTMCVHLGLILGVGG 254
I++ KLL Y H + F I+ G Y+R++ + LGV G
Sbjct: 129 LARKGEEFELKPITMEIFDCKLLSY---NHPFLTFEITVSEGAYIRSLGELIAKKLGVNG 185
Query: 255 HMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVV 314
+ L R+ G +++Y+N + + PLE L + +
Sbjct: 186 TLSSLERLSEG-----------------KFVYENEKA-------LNPLEYL--NLPQNFY 219
Query: 315 KDTTVNAICYGAKLMI 330
N + G KL +
Sbjct: 220 LGDK-NNLELGKKLFV 234
>gnl|CDD|179381 PRK02193, truB, tRNA pseudouridine synthase B; Provisional.
Length = 279
Score = 65.5 bits (160), Expect = 1e-11
Identities = 56/201 (27%), Positives = 85/201 (42%), Gaps = 38/201 (18%)
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
L KP SS + + + ++K GH+GTLDP +G L+V D T+L+ K Y
Sbjct: 5 LYKPKGISSFKFIKNFAKTNNIKKIGHTGTLDPLASGLLLVATDEDTKLIDYLDQKDKTY 64
Query: 167 VCVARL------------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK---- 204
+ + + KV + AL L G+ Q PP+ SA K
Sbjct: 65 IAKIKFGFISTTYDSEGQIINVSQNIKV-TKENLEEALNNLVGSQKQVPPVFSAKKVNGK 123
Query: 205 ------RQ--------LRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLIL 250
RQ + I+ I + +LL +D VF GTY+R++ LG +L
Sbjct: 124 RAYDLARQGKQIELKPIEIK-ISKIELLNFDEKLQNCVFMWVVSRGTYIRSLIHDLGKML 182
Query: 251 GVGGHMQELRRVRSGILGEND 271
G +M +L R + G L +N
Sbjct: 183 KTGAYMSDLERTKIGNLDKNF 203
>gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional.
Length = 636
Score = 56.5 bits (137), Expect = 3e-08
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
K ++V + I G ++ PG++ + DI+ G+EVV++T GE V +G A+M M
Sbjct: 127 KWVIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVVTEDGEVVGVGRAKMDGDDMI 186
Query: 370 TCDHGVVARIKRVVMDRDTYPRK 392
G ++++ P
Sbjct: 187 KRFRGRAVKVRKSGRGSPRLPPG 209
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 55.0 bits (133), Expect = 7e-08
Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 5/163 (3%)
Query: 445 AAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEI 504
A++ + + K + AL +KK E++ +V + VK + +I
Sbjct: 15 EAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDI 74
Query: 505 EVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK 564
+K + K K + + K KK+ + + + + D
Sbjct: 75 PKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDD 134
Query: 565 EVE-----EAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ + + +D+ ++ E D + + + ++E +E
Sbjct: 135 DDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE 177
Score = 45.8 bits (109), Expect = 5e-05
Identities = 20/135 (14%), Positives = 53/135 (39%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTE 527
L A++ +++ ++ + K KE+ E +E +KK ++ + G +
Sbjct: 6 TKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKD 65
Query: 528 VVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKK 587
+ TE KK + ++KK K + D + K ++ + + +
Sbjct: 66 TDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDID 125
Query: 588 KKKKKKKDAEEEEEE 602
+ D ++++++
Sbjct: 126 VLNQADDDDDDDDDD 140
Score = 42.3 bits (100), Expect = 6e-04
Identities = 20/164 (12%), Positives = 51/164 (31%), Gaps = 4/164 (2%)
Query: 440 ASLAAAAEQTVAEKETAGVKKRKLDASGDSPALN----AKKAKVEEVVEVEKEETVKVKK 495
V + VK D P AK A + + + ++ + K
Sbjct: 45 KKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSK 104
Query: 496 VKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSE 555
E + + + K + D + + D DE + + +
Sbjct: 105 KAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDD 164
Query: 556 KKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEE 599
+ ++ KE +E + + + ++ D+ + + ++ +K
Sbjct: 165 VDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTA 208
Score = 41.1 bits (97), Expect = 0.002
Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 6/139 (4%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKK----DKENGG 523
+ A + EE + + ++ K K E K+ + KKK D+
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAA--KSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Query: 524 ADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKS 583
V + + ++ K K + + KKK KD+ K + D
Sbjct: 59 LSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDL 118
Query: 584 EKKKKKKKKKKDAEEEEEE 602
K + ++++++
Sbjct: 119 NYVKDIDVLNQADDDDDDD 137
>gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4.
This group consists of Eukaryotic TruB proteins similar
to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4,
makes psi55 in the T loop of both cytoplasmic and
mitochondrial tRNAs. Psi55 is almost universally
conserved. Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi).
Length = 312
Score = 52.1 bits (125), Expect = 3e-07
Identities = 58/317 (18%), Positives = 92/317 (29%), Gaps = 79/317 (24%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVE-----------------------------KTGH 133
G+ ++KP+ +S +V+ +K + K GH
Sbjct: 1 GVFAINKPSGITSAQVLNDLKPLFLNSALFKDKIQRAVAKRGKKARRRKGRKRSKLKIGH 60
Query: 134 SGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARL------HDKVPDVAK------ 181
GTLDP TG L+V + T+ ++ K Y +D+ + K
Sbjct: 61 GGTLDPLATGVLVVGVGAGTKQLQDYLSCSKTYEATGLFGASTTTYDREGKILKKKPYSH 120
Query: 182 -----VARALEALTGAVFQRPPLISAVKRQ-------------------LRIRTIYESKL 217
+ L G + Q PPL SA+K R + E +
Sbjct: 121 ITREDIEEVLAKFRGDIKQVPPLYSALKMDGKRLYEYAREGKPLPRPIERRQVVVSELLV 180
Query: 218 LEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMH 277
++ L + E Y R++ LG L + EL G E
Sbjct: 181 KDWIEPGPLFTRTVEEEGKQYERSVVKMLGKELKTFAEVTELTATAEGDPVEEVEATHEE 240
Query: 278 DVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTT-VNA--------ICYGAKL 328
+EA + + L + R V I KL
Sbjct: 241 -----SKRKSEVEEEANEKSLGPEARSLESDAGRGSFSPAAMVRLARVGQGTYIRQDVKL 295
Query: 329 MIPGLLRFENDIEVGEE 345
+ L D E+G E
Sbjct: 296 IRTENLVSGEDAELGRE 312
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 53.2 bits (127), Expect = 4e-07
Identities = 43/162 (26%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 444 AAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVE---KEETVKVKKVKEDE 500
AA ++ K+ A K + +A+ D +KA+ E + E K + K K ++ +
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Query: 501 AEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKK 560
A+E + + +E KKK + K+ A + E +K + KK D+ + + E +K+++ KKK
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Query: 561 KKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++ + E E +AD+++KK ++ KK +A+++ EE
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
Score = 53.2 bits (127), Expect = 4e-07
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
AAA E AE++ +K+K +A + A K + ++ E +K+ + K K DE +
Sbjct: 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK--AEEDKKKADELK 1411
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
+ KK+ + KKK +E AD + E KA + K K E E +K+E+ KKK +
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE----EAKKAEEAKKKAE 1467
Query: 563 DKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ + + E +AD+++KK ++ KKK D ++ E
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Score = 52.5 bits (125), Expect = 6e-07
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Query: 453 KETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKK 512
K+ KK+ +A + A K + ++ E K E E E+ E +K+K+
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 513 KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGV 572
+ KKK + E +K ++ K K +DK + + + KKK + K+ EE K
Sbjct: 1375 EAKKK-ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433
Query: 573 DNGENV--EADKSEKKKKKKKKKKDAEE 598
D + EA K+++ KKK ++ K AEE
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
Score = 51.7 bits (123), Expect = 1e-06
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 446 AEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIE 505
AE+ +E +K + + A++AK E E + E +K + +EA++ E
Sbjct: 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE---AEEAKKAE 1705
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
KK++ ++KKK +E A+ E K E+ K + +DK + + ++ EKKK KE
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Query: 566 VEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
E+ E + E ++ +K++ + ++
Sbjct: 1766 EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
Score = 50.1 bits (119), Expect = 3e-06
Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Query: 445 AAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEV--EKEETVKVKKVKEDEAE 502
A E A++ +K+K D + + +K K +E + E ++ + KK E+ +
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKA----EEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
+ + KK+ ++ KK + ++ E + K + + + + KKK ++
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
Query: 563 DKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K+ +EAK + +AD+ +K KKK +A+++ EE
Sbjct: 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Score = 50.1 bits (119), Expect = 3e-06
Identities = 37/127 (29%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
K KVE++ + E EE K +++K+ E EE +++ E+ KK ++DK+ + E +K
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAE-EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
Query: 536 KAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
K+ +E E K ++ ++KKK +E+++A+ + + EA K ++ KKK ++
Sbjct: 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Query: 596 AEEEEEE 602
+EEE++
Sbjct: 1751 KDEEEKK 1757
Score = 50.1 bits (119), Expect = 3e-06
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 3/163 (1%)
Query: 442 LAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEA 501
L A E+ A++ +K+K D + K + ++ E K++ KK E+
Sbjct: 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
Query: 502 EEIEVEKKEKKKKKKK---DKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKK 558
+ E K E + + +E A + E+ +K K +E + K + ++
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
Query: 559 KKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
KKK E+++A + K+E+KKK + KK AEE ++
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 49.8 bits (118), Expect = 4e-06
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK 534
KK K EE + +E +K +++K+ E E+ +VE+ +KK+ ++K K E K +
Sbjct: 1605 KKMKAEEAKK-AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
+ K ++D+ + E +K+E+ +KK + +EA+ E ++ ++E+KKK ++ KK
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Query: 595 DAEE 598
EE
Sbjct: 1724 AEEE 1727
Score = 48.2 bits (114), Expect = 1e-05
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 451 AEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKE 510
AE++ + K A+ A AKK K EE + ++ + + K DEA++ E K+
Sbjct: 1400 AEEDKKKADELKKAAAAKKKADEAKK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Query: 511 KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE----KSEKKKKKKKDKEV 566
++ KKK +E AD + E KA + K K E + + +E KKK + K+
Sbjct: 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
Query: 567 EEAKGVDNGENVE-ADKSEKKKKKKKKKKDAEEEEEE 602
EEAK D + E A K+++ KK ++KKK E ++ E
Sbjct: 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
Score = 47.1 bits (111), Expect = 3e-05
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 8/165 (4%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAK--VEEVVEVEKEETVKVKKVKEDE 500
AAAA++ E + +K+K D + A AKKA ++ E +K E K K + +
Sbjct: 1413 AAAAKKKADEAKKKAEEKKKADEA-KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Query: 501 AEEIEVEKKEKKK----KKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV-GSPETEKSE 555
A+E + + +E KK KKK ++ AD K KA + K +E + E +K+E
Sbjct: 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
Query: 556 KKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
+ KK + K+ EE K D + E K ++KKK ++ K AEE++
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 46.3 bits (109), Expect = 5e-05
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 445 AAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEI 504
A E AE+E + RK + + + + A E E + ++KK +E + +
Sbjct: 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE----EARKADELKKAEEKKKAD- 1293
Query: 505 EVEKKEKKKK----KKKDKENGGADTEVVEKTEKVKAK----KHKDKDEVGSPETEKSEK 556
E +K E+KKK KKK +E AD E +K E+ K K K K ++ + E K+E
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
Query: 557 KKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
+ + + EE E K E KKK KK AEE
Sbjct: 1353 EAAADEAEAAEEKAEAA-----EKKKEEAKKKADAAKKKAEE 1389
Score = 46.3 bits (109), Expect = 5e-05
Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 7/165 (4%)
Query: 442 LAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKA----KVEEVVEVEKEETVKVKKVK 497
A E A++ + +K D + A KKA K EE+ + E+++ + K K
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEA--KKAEEKKKADELKKAEELKKAEEKKKAEEAK-K 1571
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKK 557
+E + + + K E+ KK ++ + EK K + K ++ ++ + E +K+E++
Sbjct: 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE 1631
Query: 558 KKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KKK + + +EA+ E ++ + E K K ++ K AEE++++
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 45.1 bits (106), Expect = 1e-04
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 451 AEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKE 510
A+K+ KK+ +A + A A+ + E +E+ +K KE+ ++ + KK+
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Query: 511 KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
++KKK D+ A+ E +K +++K K K + + + EKKK + K+ EEAK
Sbjct: 1387 AEEKKKADEAKKKAE-EDKKKADELK-KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 571 GVDNGENV--EADKSE--KKKKKKKKKKDAEEEEEE 602
D + EA K+E KKK ++ KK D +++ E
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
Score = 44.4 bits (104), Expect = 2e-04
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 446 AEQTVAEKETAGVKKRKLDASGDSPALNAKKA----KVEEVVEVEKEETVKVKKVKEDEA 501
AE+ +E +K+K++ A KKA K EE +++ E K + + +A
Sbjct: 1622 AEELKKAEE----EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
Query: 502 EEIEVEKKEKKK-----KKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
EE + ++++KK KK+ ++ + + E EK KA++ K +E + E+++K
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Query: 557 KKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ ++ K K E K + + + K E++KK ++ +K+ E EE
Sbjct: 1738 EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Score = 44.0 bits (103), Expect = 2e-04
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 7/161 (4%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
A AA++ EK+ A K+K A D + K + ++ + +K K DEA+
Sbjct: 1380 ADAAKKKAEEKKKADEAKKK--AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE---KSEKKKK 559
+ E K+ + KKK +E A+ + E KA + K K E E K+E+ KK
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Query: 560 KKKD--KEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
K + K E K D + E K + KK ++ K A+E
Sbjct: 1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
Score = 44.0 bits (103), Expect = 3e-04
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
A A++ E + A K+K A A AKK E + ++ + K K DEA+
Sbjct: 1459 AEEAKKKAEEAKKADEAKKK--AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
Query: 503 EIEVEKK--EKKKKKKKDKENGGADTEVVEKTEKV-KAKKHKDKDEVGSPETEKSEKKKK 559
+ E KK E KK ++ K + E +K +++ KA++ K +E E K ++ K
Sbjct: 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++ EEAK + E K +++KK K ++ + EE +
Sbjct: 1577 NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
Score = 43.6 bits (102), Expect = 3e-04
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 10/212 (4%)
Query: 401 MKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSV--VASLAAAAEQTVAEKETAGV 458
KK A+ K D+ K E + A+ D A E AE+
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE 1561
Query: 459 KKRKLD-ASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDE----AEEIEVEKKEKKK 513
+K+K + A N K EE + E+ +V K+ E+E AEE + ++ K K
Sbjct: 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
Query: 514 K---KKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
KK ++E + ++ E+ K + K E + E KK ++ K+ EEAK
Sbjct: 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
Query: 571 GVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ E A+ +K+ ++ KK ++ +++E E
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
Score = 42.8 bits (100), Expect = 5e-04
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 4/161 (2%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
A A++ E + A K+K A A AKK K EE + ++ + + K DEA+
Sbjct: 1433 ADEAKKKAEEAKKADEAKKK--AEEAKKAEEAKK-KAEEAKKADEAKKKAEEAKKADEAK 1489
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV-GSPETEKSEKKKKKK 561
+ E K+K + KK E E + E KA + K +E + E +K+E+KKK
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
Query: 562 KDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ K+ EE K + + E K ++ K +K E ++ E
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
Score = 41.7 bits (97), Expect = 0.001
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 478 KVEEVVEVEK----EETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGAD-------- 525
K EE + E E K ++ K+D E + E++ ++ +K +E A
Sbjct: 1213 KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI 1272
Query: 526 -TEVVEKTEKV-KAKKHKDKDEVGSPETEKS--EKKKKKKKDKEVEEAKGVDNGENVEAD 581
E K +++ KA++ K DE E +K E KKK ++ K+ +EAK +AD
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Query: 582 KSEKKKKKKKKKKDAEEEEEE 602
++KK ++ KK +A + E E
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAE 1353
Score = 41.3 bits (96), Expect = 0.002
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 445 AAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEI 504
A E A++ ++ K A AKKA + E ++ + KK E+ ++
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1499
Query: 505 EVEKKEKKKKKKKDK----ENGGADTEVVEKTEKVKAKKHKDKDEV-GSPETEKSEKKKK 559
+ KK + KKK D+ E E + E KA + K +E + E +K+E+ KK
Sbjct: 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKK 593
++ K+ EEAK + +N+ K+E+ KK ++ +
Sbjct: 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Score = 40.9 bits (95), Expect = 0.002
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 478 KVEEVVEVEK----EETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTE 533
K E+ + E EE K ++ ++ E + + E +K ++ KKD E E E
Sbjct: 1195 KAEDARKAEAARKAEEERKAEEARKAE-DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE 1253
Query: 534 KVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKK 593
K ++ + K+E+ +K + K+ EE K D EA K+E+KKK + K
Sbjct: 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD-----EAKKAEEKKKADEAK 1308
Query: 594 KDAEEEEE 601
K AEE ++
Sbjct: 1309 KKAEEAKK 1316
Score = 40.5 bits (94), Expect = 0.003
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKK---KDKENGGADTEVVEKTEK 534
K E + E+E + + ED + V+K E+ KK K E + E+ + E
Sbjct: 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVE--ADKSEKKKKKKKK 592
A + + + + E K+++ KK ++ K+ +EAK + + + K+E+ KK +
Sbjct: 1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
Query: 593 KKDAEEEEEE 602
KK AEE +++
Sbjct: 1321 KKKAEEAKKK 1330
Score = 39.7 bits (92), Expect = 0.005
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 445 AAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDE---- 500
AAE E E + +K + A KKA EE+ + E+E +K ++ K++
Sbjct: 1690 AAEALKKEAE----EAKKAEELKKKEAEEKKKA--EELKKAEEENKIKAEEAKKEAEEDK 1743
Query: 501 --AEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKK 558
AEE + +++EKKK KE E+ ++ E V ++ ++DE E +K K
Sbjct: 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
Query: 559 K------------------KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
K+ E K V + +N++ ++++ +K K K + E+
Sbjct: 1804 FDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGED 1863
Score = 38.2 bits (88), Expect = 0.015
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 440 ASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKED 499
A A AE+ + E A KK + D + AL + + ++ E++K+E + KK +E
Sbjct: 1664 AEEAKKAEEDKKKAEEA--KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
+ E E + K ++ KK+ +++ A+ ++ EK K K ++E +K+E+ +K
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE------KKAEEIRK 1775
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKK 588
+K+ EE D +E DK K
Sbjct: 1776 EKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
Score = 38.2 bits (88), Expect = 0.017
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 478 KVEEVVEVEK-----EETVKVKKVKEDEA----EEIEVEKKEKKKKKKKDKENGGADTEV 528
K E V + E+ EE K ++ + +E EE + +++ K +E AD E+
Sbjct: 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD-EL 1283
Query: 529 VEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD---KEVEEAKGVDNGENVEADKSEK 585
+ EK KA + K +E + K + ++ KK D K+ EEAK + +A++++K
Sbjct: 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Query: 586 -----KKKKKKKKKDAEEEEEE 602
K + + +AE EE+
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEK 1365
Score = 33.6 bits (76), Expect = 0.43
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKED-EAEEIEVEKKEKKKKKKKDKENGGADT 526
D + K E V ++E +K D +A+E + ++ K +E +T
Sbjct: 1049 DEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTET 1108
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKK 586
E+ K + K K +D + E K+E +K ++ ++ E+AK V+ E + ++
Sbjct: 1109 GKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEE 1168
Query: 587 KKKKKKKKDAEE 598
+K + K AE
Sbjct: 1169 ARKAEDAKKAEA 1180
Score = 32.8 bits (74), Expect = 0.64
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 461 RKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKE 520
L S +AK+ + E +E K ++ K+ E + E +K ++ KKK
Sbjct: 1070 EGLKPSYKDFDFDAKEDNRAD--EATEEAFGKAEEAKKTETGKAEEARKAEEAKKK---- 1123
Query: 521 NGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEA 580
E K E+ + + K E E K+E K+ + ++ E+A+ + E
Sbjct: 1124 -----AEDARKAEEARKAEDARKAE----EARKAEDAKRVEIARKAEDARKAEEARKAED 1174
Query: 581 DKSEKKKKKKKKKKDAEE 598
K + +K ++ + AEE
Sbjct: 1175 AKKAEAARKAEEVRKAEE 1192
Score = 32.8 bits (74), Expect = 0.68
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK 534
K +V + E+ K E + K + A + E E+K ++ +K +D + E V+K E+
Sbjct: 1183 KAEEVRKAEELRKAEDAR----KAEAARKAEEERKAEEARKAEDAKK----AEAVKKAEE 1234
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
K E +K+E+++ ++ ++ EEA+ A K+E+ +K + KK
Sbjct: 1235 AKKDAE---------EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK 1285
Query: 595 DAEEEEEE 602
E+++ +
Sbjct: 1286 AEEKKKAD 1293
Score = 32.8 bits (74), Expect = 0.69
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 446 AEQTVAEKETAGVKKRKLDASGDSPALNAKKAK-----VEEVVEVEKEETVK----VKKV 496
A++ E + +K + A A++AK + E K E + +K
Sbjct: 1089 ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA 1148
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
++ + EI + ++ +K ++ K E K E+V+ + K E + K+E
Sbjct: 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE----DARKAEA 1204
Query: 557 KKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
+K +++++ EEA+ + +A K+E KK ++ KKDAEE
Sbjct: 1205 ARKAEEERKAEEARKAE-----DAKKAEAVKKAEEAKKDAEE 1241
Score = 29.3 bits (65), Expect = 8.1
Identities = 26/128 (20%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Query: 474 AKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTE 533
A++AK E + E+ + K K ++A + E E ++ + +K ++ D + VE
Sbjct: 1100 AEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARKAEDARKAEEARKAEDAKRVEIAR 1158
Query: 534 KVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKK 593
K + + K ++ + + +K+E +K ++ ++ EE + ++ EA + ++++K ++
Sbjct: 1159 KAEDAR-KAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEA 1217
Query: 594 KDAEEEEE 601
+ AE+ ++
Sbjct: 1218 RKAEDAKK 1225
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 50.7 bits (121), Expect = 2e-06
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK 534
V+ V + + K ++ E E++++K++ K++K+ + E+
Sbjct: 73 SDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKK-----EKPKEE 127
Query: 535 VKAKKHKDKDEVGSPETEKSEKK-KKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKK 593
K +K K++ + P EK ++K KK ++ ++ EE K + K KKK KK
Sbjct: 128 PKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKK 187
Query: 594 KDAEEEEE 601
K+ EEE+
Sbjct: 188 KEPPEEEK 195
Score = 48.3 bits (115), Expect = 9e-06
Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 469 SPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEV 528
PA K AK + ++EE K + +E + ++ + +++ K +K K++ + E
Sbjct: 87 GPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
Query: 529 VEKTEKVKAKKHKDKDEVGSPETEK---SEKKKKKKKDKEVEEAKGVDNGENVEADKSEK 585
++ EK K ++ +D++E E + KK KKK ++ E + EK
Sbjct: 147 EKEKEK-KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKK----------EPPEEEK 195
Query: 586 KKKKKKKKKDAEEEEE 601
+++ ++ + EE
Sbjct: 196 QRQAAREAVKGKPEEP 211
Score = 41.8 bits (98), Expect = 9e-04
Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 439 VASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKE 498
A ++++ V E G K + + K EE + + +E K KK K
Sbjct: 66 CAESKLSSDEAVKRVEKGGSKGPAAKTKP-AKEPKNESGKEEEKEKEQVKEEKKKKKEKP 124
Query: 499 DEAEEIEVEKKEKK----KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKS 554
E + K+E K K+K+ ++ + E ++ K ++ V + K
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKEK-------KVEEPRDREEEKKRERVRAKSRPKK 177
Query: 555 EKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KKK K+ + EA K + ++ ++++ EE++ +
Sbjct: 178 PPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGK 225
Score = 32.6 bits (74), Expect = 0.68
Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 13/172 (7%)
Query: 402 KKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKR 461
K + E + +K EK ++ P + A++ KE K++
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKK------EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Query: 462 KLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
K++ D + K K K K ++ E ++EK+++ ++
Sbjct: 153 KVEEPRDREEE------KKRERVRAKSRPKKPPKKKPPNKKK-EPPEEEKQRQAAREAVK 205
Query: 522 GGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVD 573
G + V + + + KD++ SP E ++ + + K D
Sbjct: 206 GKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPD 257
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 48.8 bits (117), Expect = 6e-06
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 477 AKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVK 536
+ E + K+ T K+KK+ E ++ E EKKEKKKK K+ E E+ EK K
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKK-----KEEEEEEEKEK 450
Query: 537 AKKHKDKDEVGSPETEKSEKKKKKK 561
++ K+++E + E ++ E++KKKK
Sbjct: 451 KEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 45.3 bits (108), Expect = 7e-05
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 484 EVEKEETVKVKKVKEDEAEEIEV--EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHK 541
+ E ++ E EEIE K+ KK KK E EK + + K+ K
Sbjct: 379 KHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEK-------AEKKREEEKKEKK 431
Query: 542 DKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDA 596
K G + E+ E++K+KK++++ EE E + EK+++++KKKK A
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEE---------EEEAEEEKEEEEEKKKKQA 477
Score = 41.1 bits (97), Expect = 0.002
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 467 GDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADT 526
G A K VE+ + +EE + KK ++ E E++EK+KK+++ +E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE-----E 458
Query: 527 EVVEKTEKVKAKKHKDK 543
E + EK + ++ K K
Sbjct: 459 EEEAEEEKEEEEEKKKK 475
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
+KKA + VEK E + ++ KE + + +KKE++++++K+K+ + E E
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 532 TEKVKAKKHKDKDEVG 547
E+ + ++ K K +
Sbjct: 463 EEEKEEEEEKKKKQAT 478
Score = 39.5 bits (93), Expect = 0.004
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 542 DKDEV----GSPETEK-----SEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
++E+ GS + K EK +KK+++++ E+ K G+ E ++ E+K+KK+++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 593 KKDAEEEEEE 602
K++ EEE EE
Sbjct: 455 KEEEEEEAEE 464
Score = 39.1 bits (92), Expect = 0.006
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 530 EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
+K K K + ++ E EK EKKKK K+ EE + + + E + E+++ +
Sbjct: 406 KKATKKIKKIVEKAEKKR--EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 590 KKKKKDAEEE 599
++K+++ E++
Sbjct: 464 EEKEEEEEKK 473
Score = 35.7 bits (83), Expect = 0.063
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
+K T +KK A +K K + ++EE + K+ KE+E EE E E +E+
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Query: 512 KKKKKKDKEN 521
K+++++ K+
Sbjct: 466 KEEEEEKKKK 475
>gnl|CDD|237509 PRK13794, PRK13794, hypothetical protein; Provisional.
Length = 479
Score = 47.7 bits (114), Expect = 1e-05
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 307 TSYKR-LVVKDTTVNAI-CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMT 364
T+ K+ +VVKD I GA ++ PG+ DIE G++V+++ G+ V +G A M+
Sbjct: 121 TAKKKFIVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIILDENGDVVGVGRARMS 180
Query: 365 TAVMATCDHGVVARIKRVVMDRDTYPRK 392
+ + G+V ++++ +++
Sbjct: 181 YEEIVNMEKGMVVKVRKSEEPKNSNILS 208
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 47.3 bits (112), Expect = 2e-05
Identities = 38/166 (22%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 446 AEQTVAEKET---AGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
AE T E E ++ + + G++ + + + + + ET K EDE E
Sbjct: 723 AEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGE 782
Query: 503 -----EIEVEKKEKKKKKKKDKENGGADTEVV-EKTEKVKAKKHKDKDEVGSPETEKSEK 556
+ E++ E + K + + A + E + +A + KDE G E +
Sbjct: 783 IQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQ 842
Query: 557 KKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ K+ +K V+ G D G++ E ++ E+++++++++++ EEEEEE
Sbjct: 843 GEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEE 888
Score = 36.5 bits (84), Expect = 0.049
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 14/177 (7%)
Query: 438 VVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVK 497
VA E+T E E + + A ++ + E E E E + ++
Sbjct: 634 DVAEAEHTGERTGEEGERPTEAEGENGEESGGEA--EQEGETETKGENESEGEIPAERKG 691
Query: 498 EDEAE-EIEVEKKEKKKKKKKDKENGGADTEV--------VEKTEKVKAKKHKDKDEV-- 546
E E E EIE ++ + K + + ++ +TE +E E+ + + + + E
Sbjct: 692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEG 751
Query: 547 -GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
ETE K+ + + + E E + D GE + E K + + K E E E
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETE 808
Score = 35.0 bits (80), Expect = 0.14
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 477 AKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKK---EKKKKKKKDKENGGADTEVVE-KT 532
AKV + ++ K + + + E EE E + E ++ + E G E ++
Sbjct: 622 AKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENES 681
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
E + K + E E E K+ K + E EE + E E + E + + ++
Sbjct: 682 EGEIPAERKGEQE---GEGEIEAKEADHKGETEAEEVEHEGETE-AEGTEDEGEIETGEE 737
Query: 593 KKDAEEEEE 601
++ E+E E
Sbjct: 738 GEEVEDEGE 746
Score = 32.7 bits (74), Expect = 0.67
Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 66/222 (29%)
Query: 447 EQTVAEKETAGVK--KRKLDASGDSPA-----------LNAKKAKVE------------- 480
E++ E E G K + ++ G+ PA + AK+A +
Sbjct: 661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGE 720
Query: 481 ------------------EVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENG 522
E VE E E + K E E + E E + + + + K+ E+
Sbjct: 721 TEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDE 780
Query: 523 G-----------ADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVE---- 567
G D K E + +KDE +++ + K + E E
Sbjct: 781 GEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAE 840
Query: 568 -------EAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ KGVD G + SE+++++++++++ EEEEEE
Sbjct: 841 NQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 47.0 bits (112), Expect = 3e-05
Identities = 33/162 (20%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPAL-----NAKKAKVEEVVEVEKEETVKVKKVKEDEA 501
E+ AE E + + S + N + K ++ E+ K+KK ++E
Sbjct: 388 EENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEF 447
Query: 502 EEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSP--ETEKSEKKKK 559
+E + +E++ + +++ + ++++++EK + ++ +++ + +P +T S K
Sbjct: 448 KEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSA 507
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
KK+D + + + +D N + K+ K KKKKKK+ + + ++
Sbjct: 508 KKQDSKKKSSSKLDKAAN-KISKAAVKVKKKKKKEKSIDLDD 548
Score = 42.4 bits (100), Expect = 6e-04
Identities = 31/148 (20%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 464 DASGDSPALNAKKAKVEEVVEVEKEETV--------KVKKVKEDEA-EEIEVEKKEKKKK 514
D G++P + KK + E ++E + + + K++E EIE ++E + +
Sbjct: 345 DDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGE 404
Query: 515 KKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDN 574
++ D+E ++ K + + + E + E + K+KK+ E EE + +
Sbjct: 405 EESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEE 464
Query: 575 GENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ + K+ +K +K++ EEE +E
Sbjct: 465 AKVEKVANKLLKRSEKAQKEEEEEELDE 492
Score = 41.6 bits (98), Expect = 0.001
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
A+ K EE E EE + + +E+ EE E +K ++K +
Sbjct: 381 RAEARKKEENDA-EIEELRRELEGEEESDEEENEEPSKKNVGRRK----------FGPEN 429
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
+ +A+ K K E K+E K+KK+ D+E E + A+K K+ +K +K
Sbjct: 430 GEKEAESKKLKKE------NKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQK 483
Query: 593 KKDAEEEEEE 602
+++ EE +EE
Sbjct: 484 EEEEEELDEE 493
Score = 38.1 bits (89), Expect = 0.012
Identities = 26/156 (16%), Positives = 65/156 (41%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV 506
+ + G + + +A K E+ E+EE ++ K ++ +
Sbjct: 416 SKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLL 475
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEV 566
++ EK +K+++++E + + + K+ K +D + S + +K+ K K K
Sbjct: 476 KRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVK 535
Query: 567 EEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++ K + + + E+ K + +E++EE
Sbjct: 536 KKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEE 571
Score = 34.3 bits (79), Expect = 0.20
Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 30/183 (16%)
Query: 445 AAEQTVAEKETAGVKKRKLDASGDSPALNAK-KAKVEEVVEVEKEETVKVKKVKEDEAEE 503
A + + E A ++ + + ++P L + K+++ ++ +
Sbjct: 470 VANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISK 529
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEK---------- 553
V+ K+KKKK+K + D E + K+ +D+D+ P K
Sbjct: 530 AAVKVKKKKKKEKSIDLD--DDLIDEEDSIKLDVDDEEDEDDEELPFLFKQKDLIKEAFA 587
Query: 554 -----SEKKKKKKKDKEVEEAKGVDN---------GENVEADKSEKKKKKKKKKKDAEEE 599
+E +K+KK+ E E+ K +D G+ + K KKK+K+K++ + E
Sbjct: 588 GDDVVAEFEKEKKEVIEEEDPKEIDLTLPGWGSWAGDGI---KKRKKKRKRKRRFLTKIE 644
Query: 600 EEE 602
+
Sbjct: 645 GVK 647
Score = 30.0 bits (68), Expect = 3.9
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVK-------AKKHKDKDEV---- 546
ED+ E+ + + +KK K G D E +K KK ++ E+
Sbjct: 339 EDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELR 398
Query: 547 ----------GSPETEKSEKKKKKKKDK-EVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
E S+K ++K E E + E K+KK+ ++++
Sbjct: 399 RELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEE 458
Query: 596 AEEEEEE 602
E+EEE
Sbjct: 459 LEDEEEA 465
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 45.6 bits (108), Expect = 4e-05
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 3/144 (2%)
Query: 459 KKRKLDASGDSPALNAKKAKVEE---VVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKK 515
++RK + L K+A +E +E E+ + KK E+ A++ +++K+ ++
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAA 138
Query: 516 KKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNG 575
K A E K AKK + + + + + KK E E A
Sbjct: 139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAE 198
Query: 576 ENVEADKSEKKKKKKKKKKDAEEE 599
+A+ KKK + KK A E
Sbjct: 199 AKKKAEAEAKKKAAAEAKKKAAAE 222
Score = 40.6 bits (95), Expect = 0.002
Identities = 37/136 (27%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 439 VASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKE 498
A A AE A A KK +A + A AKKA E + E E K +
Sbjct: 144 AAKAKAEAEAKRAA---AAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAK 200
Query: 499 DEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKK 558
+AE E +KK + KKK A E K A+ EK+ K
Sbjct: 201 KKAEA-EAKKKAAAEAKKK------AAAEAKAAAAKAAAEAKAA--------AEKAAAAK 245
Query: 559 KKKKDKEVEEAKGVDN 574
+K + A VD+
Sbjct: 246 AAEKAAAAKAAAEVDD 261
Score = 37.5 bits (87), Expect = 0.018
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 29/162 (17%)
Query: 440 ASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKED 499
A AA ++ E K A ++ A K + K E KK +
Sbjct: 124 AKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKK-KAEAEAAKKAAAE 182
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
++ E E K A E +K E KK + + +K+ + K
Sbjct: 183 AKKKAEAEAAAK------------AAAEAKKKAEAEAKKKAAAEAK------KKAAAEAK 224
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
K EAK +EK K +K A +
Sbjct: 225 AAAAKAAAEAKA----------AAEKAAAAKAAEKAAAAKAA 256
Score = 35.9 bits (83), Expect = 0.054
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 4/159 (2%)
Query: 444 AAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE 503
AA ++ + + E + ++ + A A + + K K + +
Sbjct: 97 AAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRA 156
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
KK + KKK + K + K E +K+E + KKK
Sbjct: 157 AAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAE----AKKKAEAEAKKKAA 212
Query: 564 KEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E ++ + +E K +K E+
Sbjct: 213 AEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAA 251
Score = 31.3 bits (71), Expect = 1.4
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEA-EEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
+ + + E ++ E ++ K+ E E +++E E+ +++KK+ +E ++
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
Query: 532 TEKVKAK-----KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKK 586
E+ AK K K + E + + KK E E AK +A+
Sbjct: 134 AEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAA 193
Query: 587 KKKKKKKKDAEEEEEE 602
K + KK AE E ++
Sbjct: 194 KAAAEAKKKAEAEAKK 209
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 45.4 bits (108), Expect = 8e-05
Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 6/211 (2%)
Query: 392 KWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVA 451
P+ K+K + DK K + + + D + ++
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQE 1226
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
+ E K +K N E+ E ++ K K K V+
Sbjct: 1227 DDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPP 1286
Query: 512 KKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKG 571
K+ D E+ G +KVK + + + + + +KKK V++A
Sbjct: 1287 PPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASA 1346
Query: 572 VDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ ++ +KKK +E++++
Sbjct: 1347 SQSSR------LLRRPRKKKSDSSSEDDDDS 1371
Score = 39.6 bits (93), Expect = 0.005
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
L+ + +EE EVE++E K +++K + K K K KKK+K+ + + +K
Sbjct: 1134 LDKFEEALEEQEEVEEKEIAKEQRLKSKTKGK--ASKLRKPKLKKKEKKKKKSSADKSKK 1191
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKK 591
V K D DE + + KK + ++ + + + + KK
Sbjct: 1192 ASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSS 1251
Query: 592 KKKDAEEE 599
K + +E
Sbjct: 1252 KSSEDNDE 1259
Score = 36.2 bits (84), Expect = 0.054
Identities = 23/135 (17%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 472 LNAKKAKVEEVVEVE-----KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADT 526
L K+ ++E++ E+ K ++ E++ E E E ++++ K K K
Sbjct: 1111 LEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKAS-KL 1169
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKK 586
+ +K K KK D+ + K+ + +++++ + +D+ + +
Sbjct: 1170 RKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDE 1229
Query: 587 KKKKKKKKDAEEEEE 601
++K K KK + + +
Sbjct: 1230 EQKTKPKKSSVKRLK 1244
Score = 34.3 bits (79), Expect = 0.21
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKD--KENGGADTEVVEKTEKV------KAKKHKDK 543
KV+K+ E E+ E E ++ K KD E+ E +E+ E+V K ++ K K
Sbjct: 1103 KVEKL-NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSK 1161
Query: 544 DEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ + + K + KKK+KK K+ K + + + +K+K K ++
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSN 1219
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 43.9 bits (104), Expect = 2e-04
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 472 LNAKKAKVEEVVEVEKE-ETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
+K+K++ + + + + + EE +V KK KK+DK + E +
Sbjct: 14 GTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDK-----NNESKK 68
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
K+EK K KK + K+ ET+ K KK K + + K E+V+ ++ + +
Sbjct: 69 KSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPK-PKPNEDVDNAFNKIAELAE 127
Query: 591 KKKK 594
K
Sbjct: 128 KSNV 131
Score = 42.8 bits (101), Expect = 4e-04
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKH-----KDKDEVGSPETEKSEKKKKK 560
+K + + E++ + + K KDK E + E++K +KKKK
Sbjct: 16 TQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKK 75
Query: 561 KKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KK ++ E + + K KK KKK K E+ +
Sbjct: 76 KKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117
Score = 35.1 bits (81), Expect = 0.10
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
K + +KE+ K K ++ ++ + EKKE K + + G T K
Sbjct: 45 EENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEG---ETKLGFKTPKKSKK 101
Query: 533 EKVKAKKHKDKDEVGSP--ETEKSEKKKKKKKDKEVEEAKGVDN 574
K K K K ++V + + + +K V + GVDN
Sbjct: 102 TKKKPPKPKPNEDVDNAFNKIAELAEKSNVYIGAHVSASGGVDN 145
Score = 34.7 bits (80), Expect = 0.14
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 458 VKKRKLD--ASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKK 515
+K KL + S L K + E E + K K+ + ++ KK+ +KKK
Sbjct: 16 TQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTK-KDKKEDKNNESKKKSEKKK 74
Query: 516 KKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNG 575
KK KE +K + + K +P+ K KKK K K E+ VDN
Sbjct: 75 KKKKE------------KKEPKSEGETKLGFKTPKKSKKTKKKPPKP-KPNED---VDNA 118
Query: 576 ENVEADKSEKKKKK 589
N A+ +EK
Sbjct: 119 FNKIAELAEKSNVY 132
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 42.4 bits (100), Expect = 2e-04
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
E E + +KKE ++ +K K+ + K +K K KK KDKD+ + +KSEKK +
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Query: 560 KKKDKEVEEAK 570
K+ + ++E+
Sbjct: 116 KEAEDKLEDLT 126
Score = 38.5 bits (90), Expect = 0.003
Identities = 17/78 (21%), Positives = 35/78 (44%)
Query: 525 DTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSE 584
D E E +K K + + E ++ K KKKK K+ ++ K + + + + +
Sbjct: 54 DAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Query: 585 KKKKKKKKKKDAEEEEEE 602
+K+ + K +D + E
Sbjct: 114 DEKEAEDKLEDLTKSYSE 131
Score = 35.4 bits (82), Expect = 0.036
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
K K +E+ EE KVKK E++ + +KK KKKK K + +K+
Sbjct: 58 TEAKKKKKEL----AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD---DKS 110
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK 564
EK K+ +DK E + ++ + K +
Sbjct: 111 EKKDEKEAEDKLEDLTKSYSETLSTLSELKPR 142
Score = 30.0 bits (68), Expect = 2.4
Identities = 15/69 (21%), Positives = 29/69 (42%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
KK ++ E +E K+E + +K K + + + + K+K KK K + E
Sbjct: 59 EAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Query: 531 KTEKVKAKK 539
+ + K
Sbjct: 119 EDKLEDLTK 127
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 44.2 bits (104), Expect = 2e-04
Identities = 28/132 (21%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
L +E +E K+E K +++ +E + E+KEKK ++++ K + E+ +
Sbjct: 243 LQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE 302
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGV-DNGENVEADKSEKKKKKK 590
K++ +K D++++ K +K+ KK +KE+++ K + E + K++ ++
Sbjct: 303 LLKLERRKVDDEEKL------KESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEE 356
Query: 591 KKKKDAEEEEEE 602
++++ E+ +E+
Sbjct: 357 EEEEQLEKLQEK 368
Score = 38.8 bits (90), Expect = 0.010
Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK 534
+ K+ E E E + ++++K E + E KK + + K+K + + K
Sbjct: 175 RLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLK 234
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
+ ++ E+ E ++ + K++ +KE E V E + + ++++ K
Sbjct: 235 LNEERIDLLQELLRDE-QEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLA 293
Query: 595 DAEEEEEE 602
EEE +
Sbjct: 294 KEEEELKS 301
Score = 34.9 bits (80), Expect = 0.16
Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 6/164 (3%)
Query: 444 AAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE 503
E+ + E+E + K + + + L +K EE ++ ++E K++K + E EE
Sbjct: 278 EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEE 337
Query: 504 IEVEKKEKKKKKKKDKENGGA--DTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKK 561
IE +KE K+ + K + E +++ + ++ K ++ S + K K+++
Sbjct: 338 IEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 397
Query: 562 KDKEVEEAKGV----DNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ + EE K + E E E+KK++ K ++ EE E
Sbjct: 398 LELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLE 441
Score = 33.8 bits (77), Expect = 0.29
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
K + E EK E+ K EEI+ +++ K++ KK K +
Sbjct: 670 SELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQ 729
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKK--- 588
+ K + E E E+ E+K + KK++E EE + E A++ EK +K
Sbjct: 730 EAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKV 789
Query: 589 ---KKKKKKDAEEEEEE 602
K++K K EEE
Sbjct: 790 EEEKEEKLKAQEEELRA 806
Score = 33.8 bits (77), Expect = 0.35
Identities = 24/126 (19%), Positives = 61/126 (48%)
Query: 477 AKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVK 536
+ + E+E +E + ++ KE E E + E+K+ + +++ A + ++E +
Sbjct: 881 EEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEE 940
Query: 537 AKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDA 596
+ ++ + ++ E+++ K+ EE V+ E ++ E++ K + KK+
Sbjct: 941 LLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKER 1000
Query: 597 EEEEEE 602
EEE++
Sbjct: 1001 LEEEKK 1006
Score = 32.2 bits (73), Expect = 1.1
Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVK------------ 494
E E+E K++L+ + A K+ K EE + +EE +K+
Sbjct: 245 ELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 304
Query: 495 KVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKS 554
K++ + ++ E K+ +K+ KK +KE +K ++ + K+ E+ K
Sbjct: 305 KLERRKVDDEEKLKESEKELKKLEKEL--------KKEKEEIEELEKELKEL----EIKR 352
Query: 555 EKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E ++++++ E + K E + A K + ++ K EEE E
Sbjct: 353 EAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 400
Score = 29.6 bits (66), Expect = 7.3
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
E E+ EE + +K ++++ EE E K+ K++ N A E EK E+ +
Sbjct: 936 SEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDE 995
Query: 540 HKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
K + E+KK+ ++ E +
Sbjct: 996 LKKER--------LEEEKKELLREIIEETCQ 1018
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 42.0 bits (99), Expect = 3e-04
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 467 GDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADT 526
G E EKE T KV+K E EVE++EKK+KKKK +
Sbjct: 117 GYGAPDGPPSELGSESETSEKETTAKVEK-------EAEVEEEEKKEKKKKKEVKK---- 165
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKK 561
+ K KK K + V ++K +KKKKKK
Sbjct: 166 -------EKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 41.6 bits (98), Expect = 3e-04
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 25/96 (26%)
Query: 499 DEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKK 558
E+ E + +K+ E VE+ EK + KK K+ EK EKK
Sbjct: 123 GPPSELGSESETSEKETTAKVEKE----AEVEEEEKKEKKKKKEVK------KEKKEKKD 172
Query: 559 KKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
KK+K K KKKKKKKKKK
Sbjct: 173 KKEKMV---------------EPKGSKKKKKKKKKK 193
Score = 35.8 bits (83), Expect = 0.034
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 545 EVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
ET + E K +K+ EVEE + + + E K +K+KK KK+K +
Sbjct: 128 LGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 31.2 bits (71), Expect = 0.91
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 523 GADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADK 582
G+++E EK K +K + +E EK EKKKKK+ KE +E K DK
Sbjct: 129 GSESETSEKETTAKVEKEAEVEE-----EEKKEKKKKKEVKKEKKEKK----------DK 173
Query: 583 SEKKKKKKKKKKDAEEEEE 601
EK + K KK +++++
Sbjct: 174 KEKMVEPKGSKKKKKKKKK 192
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 42.9 bits (101), Expect = 4e-04
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 470 PALNAKKAKVEEVVEVEKEE-TVKVKKVKEDEAEEIEVEKKEKK--KKKKKDKENGGADT 526
P N K+ + + E VK K +D ++E EK E K K K N +
Sbjct: 156 PTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKS 215
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKK 586
++ K K K+ K+K E S T K E +++ K + E + + ++ D+ E +
Sbjct: 216 NIMSSFFKKKTKEKKEKKEA-SESTVKEESEEESGKRDVILEDESAEP-TGLDEDEDEDE 273
Query: 587 KKKKKKKKDAEEEEEE 602
K ++ D+EEE EE
Sbjct: 274 PKPSGERSDSEEETEE 289
Score = 42.1 bits (99), Expect = 6e-04
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 9/170 (5%)
Query: 439 VASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKE 498
V A + A K TA K+ S K K + + +ET K +
Sbjct: 141 VGLPPVAPAASPALKPTANGKRPSSKPP-KSIMSPEVKVKSAKKTQDTSKETTTEKTEGK 199
Query: 499 DEAEEIEVEKKEKKKK------KKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE 552
+ +++ KK KK + E E T K ++++ K +V +
Sbjct: 200 TSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDV--ILED 257
Query: 553 KSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+S + +D++ +E K + E + EK+K+K+K+ K E+E+E
Sbjct: 258 ESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDE 307
Score = 40.2 bits (94), Expect = 0.003
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
Query: 432 PPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETV 491
P S + +A + KET K + + K + K++T
Sbjct: 168 PKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTK 227
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPET 551
+ K+ KE ++ E +E+ K+ E+ A+ +++ E K + ET
Sbjct: 228 EKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEET 287
Query: 552 EKSEKKKKKKKDK----EVEEAKGVDNGEN-VEADKSEKKKKKKKKKKDAEEEE 600
E+ EK+K+K+ K E E+ + E+ VE ++SE+ + KK+ E+EE
Sbjct: 288 EEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEE 341
Score = 34.4 bits (79), Expect = 0.15
Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 22/205 (10%)
Query: 402 KKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQT---VAEKETAGV 458
KK K K KT + A PP ++++S + E + V
Sbjct: 181 AKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTV 240
Query: 459 KKRKLDASGDSP-ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKK 517
K+ + SG L + A+ + E E E+ + E + E E +EK+K+K+K
Sbjct: 241 KEESEEESGKRDVILEDESAEPTGLDEDEDED----EPKPSGERSDSEEETEEKEKEKRK 296
Query: 518 DKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGEN 577
++K + + + + + SP E+ ++ + + EE K E
Sbjct: 297 R----------LKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEK----EEV 342
Query: 578 VEADKSEKKKKKKKKKKDAEEEEEE 602
+ +++ +++ K ++EE
Sbjct: 343 TVSPDGGRRRGRRRVMKKKTFKDEE 367
Score = 30.6 bits (69), Expect = 2.5
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 11/131 (8%)
Query: 470 PALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVV 529
K+A V++ V + V + ++ K+ K K + V
Sbjct: 120 SLEYGKQAGPITNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPK---SIMSPEV 176
Query: 530 EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
+ K + +EK + K K + N+ + +KK K+
Sbjct: 177 KVKSAKKTQDTSK--------ETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKE 228
Query: 590 KKKKKDAEEEE 600
KK+KK+A E
Sbjct: 229 KKEKKEASEST 239
>gnl|CDD|224927 COG2016, COG2016, Predicted RNA-binding protein (contains PUA
domain) [Translation, ribosomal structure and
biogenesis].
Length = 161
Score = 40.7 bits (96), Expect = 5e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM-TTKGEAVALGIAEMTTA 366
+VV + V + GA +M PG++ + +I+ G+ VV++ KG +A+GIA M+
Sbjct: 75 GKYVVVVDEGAVKFVLNGADVMAPGIVSADGEIKEGDIVVVVDEKKGRPLAVGIALMSGK 134
Query: 367 VMATCDHGVVARI 379
M G +
Sbjct: 135 EMEEKKKGKAVKN 147
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 42.8 bits (100), Expect = 5e-04
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 523 GADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADK 582
+T+ + + V + + V E + +++ + +K+ E+E A+G+ E EADK
Sbjct: 465 MEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE-AQGIKYSETSEADK 523
Query: 583 SEKKKKKKKKKKDAEEEEEE 602
K K KK+K D EEEE++
Sbjct: 524 DVNKSKNKKRKVDEEEEEKK 543
Score = 35.8 bits (82), Expect = 0.066
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGG-ADTEVVEKTEKVK 536
+ + E + + + + EE + + +E + +K+ + E G +E E + V
Sbjct: 467 ETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVN 526
Query: 537 AKKHKDKDEVGSPETEK------SEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
K+K + E +K S K+KK K + AK + EN++ K + K+KK
Sbjct: 527 KSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKK 586
Query: 591 KKKKD 595
K
Sbjct: 587 LDSKK 591
Score = 33.1 bits (75), Expect = 0.53
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 481 EVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKH 540
V + ++ + + +EE V + E + + E D E ++ ++++ +
Sbjct: 452 SVDSYDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQ 511
Query: 541 KDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
K S E +K K K KK K EE + + ++K +K KK K +EE+
Sbjct: 512 GIKYSETS-EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQ 570
Query: 601 EE 602
E
Sbjct: 571 AE 572
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 42.0 bits (99), Expect = 0.001
Identities = 28/139 (20%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
L + ++EE + +EE ++++ E+ +EIE K E ++ +++ +E E+ E+
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296
Query: 532 TEKVKAK--------KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKS 583
E+++ + + + + E + K+K + +E+EE + + +
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
Query: 584 EKKKKKKKKKKDAEEEEEE 602
E+ K++ ++K A EE E
Sbjct: 357 EEAKEELEEKLSALLEELE 375
Score = 37.8 bits (88), Expect = 0.018
Identities = 25/159 (15%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 444 AAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE 503
A E + E +++ + + L + ++E + + +E +++ E+ E
Sbjct: 265 AEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
+E K++ + K++ +E E+ + +++ K ++ +E S E+ E+ + ++
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAK-EELEEKLSALLEELEELFEALRE 383
Query: 564 KEVEEAKGVDNGEN-VEADKSEKKKKKKKKKKDAEEEEE 601
+ E + N +E K E + +++ ++ +E E+
Sbjct: 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLED 422
Score = 33.1 bits (76), Expect = 0.54
Identities = 22/132 (16%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
L+A ++EE+ E +EE +++ + E+E K+E + +++ + ++ E
Sbjct: 366 KLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
+ ++++A+ + + E+ E E +++ + E + E A+ E+ ++ +
Sbjct: 426 ELKELEAELEELQTELEELNEELEELEEQLE-----ELRDRLKELERELAELQEELQRLE 480
Query: 591 KKKKDAEEEEEE 602
K+ E +
Sbjct: 481 KELSSLEARLDR 492
Score = 32.0 bits (73), Expect = 1.2
Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 454 ETAGV---KKRKLDASGDSPALNAKKAKVEEVV-EVE------KEETVKVKKVKEDEAEE 503
E AGV K+RK +A ++E+++ E+E + + K ++ +E +AE
Sbjct: 163 EAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAEL 222
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK- 562
E+E K K+ ++ E + + E+ + ++ +E E E E K + ++
Sbjct: 223 RELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA---EKEIEELKSELEEL 279
Query: 563 DKEVEEAKGVDNG-----ENVEADKSEKKKKKKKKKKDAEEEEEE 602
+E+EE + E +E + S +++ ++ + + EE EE
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324
Score = 29.3 bits (66), Expect = 8.7
Identities = 35/166 (21%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEV----------VEVEKEETVKVKKV 496
E E+ A +K+ + AL + ++EE +E E E + ++
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
E E EE+E E +E ++K + +E + +E+ ++ + ++ + + E E E K
Sbjct: 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE-ELEELEAEKE----ELEDELK 880
Query: 557 KKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ +++K++ EE +E++ +E K++ +K ++ EE E +
Sbjct: 881 ELEEEKEELEEEL------RELESELAELKEEIEKLRERLEELEAK 920
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 41.6 bits (97), Expect = 0.001
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 490 TVKVKKVKEDEAEE---IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV 546
KK++ A + E KKK + K +KT ++ ++ E+
Sbjct: 46 AGSRKKIESALAVDEEPDENGAVSKKKPTRSVKRA-------TKKTVVEISEPLEEGSEL 98
Query: 547 GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E +K+ KK + K +VE +K+EKK +K++K K +E+ E+
Sbjct: 99 VVNEDAALDKESKKTPRRT--RRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVED 152
Score = 32.7 bits (74), Expect = 0.58
Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 470 PALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVV 529
+ K+E + V++E K+ + K+ KK + E +E+V
Sbjct: 43 LLAAGSRKKIESALAVDEEPDENGAVSKKKPTRSV---KRATKKTVVEISEPLEEGSELV 99
Query: 530 -----EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENV--EADK 582
++ K + + + + ++ E+K +KK K + K ++ E+ E++
Sbjct: 100 VNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEV 159
Query: 583 SEKKKKKKKKKKDAEEEEE 601
S+ ++ + + E EEE
Sbjct: 160 SDVEESEFVTSLENESEEE 178
Score = 32.3 bits (73), Expect = 0.86
Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 11/148 (7%)
Query: 440 ASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKED 499
S ++E S P + K+A + VVE+ + + V +
Sbjct: 47 GSRKKIESALAVDEEPDENGAV----SKKKPTRSVKRATKKTVVEISEPLEEGSELVVNE 102
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
+A + KK ++ ++K D E + +KV+ ++ K + E E +
Sbjct: 103 DAALDKESKKTPRRTRRKAAAASS-DVEEEKTEKKVRKRRKVKKMD------EDVEDQGS 155
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKK 587
+ + +VEE++ V + EN ++ + +K
Sbjct: 156 ESEVSDVEESEFVTSLENESEEELDLEK 183
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 40.7 bits (96), Expect = 0.002
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
+ +V + +EE K+ K E+E +E EKKE+KKK++++ + E K E+ + K
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 539 K 539
K
Sbjct: 318 K 318
Score = 31.8 bits (73), Expect = 0.88
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 17/76 (22%)
Query: 527 EVVEKTEKVKAK--------KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENV 578
EV+ K +K + + +++ E E EKK++KKK++ E + E
Sbjct: 256 EVLRKVDKTREEEEEKILKAAEEERQE------EAQEKKEEKKKEER-EAKLAKLSPE-- 306
Query: 579 EADKSEKKKKKKKKKK 594
E K E+K++KK+ +K
Sbjct: 307 EQRKLEEKERKKQARK 322
Score = 30.3 bits (69), Expect = 2.8
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 460 KRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDE------AEEIE-VEKKEKK 512
RK+D + + KA EE E +E+ + KK + + EE +E+KE+K
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 513 KKKKK 517
K+ +K
Sbjct: 318 KQARK 322
Score = 30.3 bits (69), Expect = 3.0
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 20/71 (28%)
Query: 494 KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEK 553
K +K E E E E +EKK++KKK++ +AK K E E K
Sbjct: 271 KILKAAEEERQE-EAQEKKEEKKKEER---------------EAKLAKLSPE----EQRK 310
Query: 554 SEKKKKKKKDK 564
E+K++KK+ +
Sbjct: 311 LEEKERKKQAR 321
Score = 29.1 bits (66), Expect = 6.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 553 KSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
E +K K +E EE K + E +++++KK++KKK++ + +
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 40.7 bits (95), Expect = 0.002
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV 506
+Q ++ A +K+K +A+ A A K K + + EE K + + +AE
Sbjct: 133 QQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAA- 191
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEV 566
KK+ + + K E A+ E K EK ++K + K K +
Sbjct: 192 AKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKA 251
Query: 567 EEAK 570
E K
Sbjct: 252 AERK 255
Score = 38.4 bits (89), Expect = 0.009
Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 3/133 (2%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
A A+K E + E++ + K+ E K K + A+
Sbjct: 120 AEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKA 179
Query: 531 KTE-KVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
E K KA+ K + + +EK K + + K E K E E +EKKK
Sbjct: 180 AEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAE--EKAAAEKKKAA 237
Query: 590 KKKKKDAEEEEEE 602
K K D +
Sbjct: 238 AKAKADKAAAAAK 250
Score = 36.9 bits (85), Expect = 0.025
Identities = 35/161 (21%), Positives = 53/161 (32%), Gaps = 19/161 (11%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNA--KKAKVEEVVEVEKEETVKVKKVKEDE 500
A EQ +E + + + A +K K E E K K +
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK-LKAAAEA 169
Query: 501 AEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKK 560
++ E K ++ K K + A + E K A+K K E E K +KK
Sbjct: 170 KKKAEEAAKAAEEAKAKAEA--AAAKKKAEAEAKAAAEKAKA-------EAEAKAKAEKK 220
Query: 561 KKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ E+A E K+ K K K A+ E
Sbjct: 221 AEAAAEEKAAA-------EKKKAAAKAKADKAAAAAKAAER 254
Score = 34.2 bits (78), Expect = 0.17
Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 13/176 (7%)
Query: 436 DSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKK 495
D+V+ A +Q + K+ A++ K ++ E E+ + ++ ++
Sbjct: 51 DAVMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKER 110
Query: 496 VKEDE----AEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPET 551
+K E AEE E + + ++K++++ A+ + + K KA K + +
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAK 170
Query: 552 EKSEKKKK-----KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+K+E+ K K K + K + EA + +K K + + K E++ E
Sbjct: 171 KKAEEAAKAAEEAKAKAEAAAAKKKAE----AEAKAAAEKAKAEAEAKAKAEKKAE 222
Score = 31.5 bits (71), Expect = 1.2
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 440 ASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKED 499
A+ A AA + K A KK+ +A+ + AK + E E +K K +
Sbjct: 151 AAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAE 210
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKD 542
+ + EKK + ++K A E + K KA K
Sbjct: 211 AEAKAKAEKKAEAAAEEK------AAAEKKKAAAKAKADKAAA 247
Score = 30.3 bits (68), Expect = 3.5
Identities = 20/89 (22%), Positives = 32/89 (35%)
Query: 440 ASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKED 499
A AA A + K A K+K +A + A AK + +K E +K +
Sbjct: 173 AEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAE 232
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEV 528
+ + K +K K E A +
Sbjct: 233 KKKAAAKAKADKAAAAAKAAERKAAAAAL 261
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 39.8 bits (93), Expect = 0.002
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
EK KA K K E+ + + + +K K + + A+ V + E + +KK KKKK
Sbjct: 19 EKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKV 78
Query: 593 KKDAEEEEEE 602
+
Sbjct: 79 PLQVNPAQLF 88
Score = 33.6 bits (77), Expect = 0.17
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPET 551
+ K+V E K+K + +K N K + K +
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHS--QE 65
Query: 552 EKSEKKKKKKKDKEVE 567
+K EKKK KKK ++
Sbjct: 66 KKEEKKKPKKKKVPLQ 81
Score = 33.2 bits (76), Expect = 0.25
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 528 VVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKK 587
VV E K K +KDK G+PE + K +K K K ++
Sbjct: 12 VVRALESEKYKANKDK---GNPEIYNKINSQDKAIEKFKLLIK---AQMAERVKKLHSQE 65
Query: 588 KKKKKKKDAE 597
KK++KKK +
Sbjct: 66 KKEEKKKPKK 75
Score = 30.5 bits (69), Expect = 1.8
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 21/80 (26%)
Query: 513 KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGV 572
+K K +K+ G + K +D + EK K K + E
Sbjct: 19 EKYKANKDKGNPE----------IYNKINSQD-------KAIEKFKLLIKAQMAER---- 57
Query: 573 DNGENVEADKSEKKKKKKKK 592
+ + K EKKK KKKK
Sbjct: 58 VKKLHSQEKKEEKKKPKKKK 77
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 40.8 bits (96), Expect = 0.002
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 9/171 (5%)
Query: 428 NVVLPPGGDSVVASLAAAAE--QTVAEKETAGVKKR-KLDASGDSPALNAKKAKVEEVVE 484
V +P G S S E Q EKE KKR +L+ K K+
Sbjct: 178 AVEVPHAGASYNPSFEDHQELLQEEYEKEVKAEKKRQELER-----VEEKKLEKMAPEAS 232
Query: 485 VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKD 544
E + + + +D+ E E + + + + + E KT+ + K+ + K+
Sbjct: 233 RLDEMSEGLLEESDDD-GEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKE 291
Query: 545 EVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
+ EK KKK + + E AK V E A K E++K++ +KKK
Sbjct: 292 LEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKL 342
Score = 30.1 bits (68), Expect = 4.2
Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 44/218 (20%)
Query: 403 KKLIAEGKLDKHGKLNEKTPQE--WARNVVLPPGGD-----------SVVASLAAAAEQT 449
KKL K K LN W V A +
Sbjct: 109 KKLARGKKGGKAKLLNASKDNYDLWGEEEPPDTPKWPKKDLAEHTLEQVAKKTVKTAPIS 168
Query: 450 VAEKETAGVKKRKLDASGDS--PALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVE 507
+A A G S P+ + ++E E E + E + +E+E
Sbjct: 169 LAANGKPVPAVEVPHA-GASYNPSFEDHQELLQEEYEKEVK--------AEKKRQELERV 219
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKD---KDEVGSPETEKSEKKKKKKKDK 564
+++K +K + +E + + ++ D E E E K + K+
Sbjct: 220 EEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKT 279
Query: 565 EVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K+++ K+K++K+ + E +EE+
Sbjct: 280 -----------------KAQRNKEKRRKELEREAKEEK 300
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 40.5 bits (95), Expect = 0.002
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 528 VVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKK 587
VEK + EV E E+ +++KK++++K ++ + VD E +K EKKK
Sbjct: 26 WVEKEVEK---------EVPDEEEEEEKEEKKEEEEKTTDKEEEVD----EEEEKEEKKK 72
Query: 588 KKKKKKKDAEEEEE 601
K KK K+ E E
Sbjct: 73 KTKKVKETTTEWEL 86
Score = 36.7 bits (85), Expect = 0.036
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
EE E ++EE K +E + EE EK+EKKKK KK KE + E++ KT+ + +
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEE---EKEEKKKKTKKVKET-TTEWELLNKTKPIWTRN 97
Query: 540 HKD--KDEVGS 548
KD K+E +
Sbjct: 98 PKDVTKEEYAA 108
Score = 34.7 bits (80), Expect = 0.12
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
KE E E + E++E+K++KK+++E E V++ E EK EK
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDE------------------EEEKEEK 70
Query: 557 KKKKKKDKEV 566
KKK KK KE
Sbjct: 71 KKKTKKVKET 80
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 40.4 bits (95), Expect = 0.003
Identities = 29/145 (20%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
L K+ ++EE+ + KE ++++++E E + K+++ ++ K + G ++ ++
Sbjct: 333 LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE 392
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK----EVEEAKGV----------DNGEN 577
E+++ K + ++E+ E KK+ K+ K E+++AKG ++ +
Sbjct: 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKE 452
Query: 578 VEADKSEKKKKKKKKKKDAEEEEEE 602
+ + + + K+ +K+ K+ EE+E +
Sbjct: 453 LLEEYTAELKRIEKELKEIEEKERK 477
Score = 33.9 bits (78), Expect = 0.26
Identities = 33/159 (20%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 451 AEKETAGVKKRKLDA-SGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKK 509
E++ +L+ + + L K K++ ++ K+E ++K++E + + E+EKK
Sbjct: 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE---LEKLEELKKKLAELEKK 564
Query: 510 EKKKKKKKDK------ENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
+ +++ + E G E +E+ K + + E+ E E ++K+ KK
Sbjct: 565 LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKL 624
Query: 564 K-EVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ E+++A ++ K+ ++ +KK EE EE
Sbjct: 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE 663
Score = 32.7 bits (75), Expect = 0.68
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 451 AEKETAGVKKRKLDASGDSPALNAKKAKVEEVVE-------------VEKEETVKVKKVK 497
EKE V + + S + P L + K+E+ V+ E E K+
Sbjct: 198 KEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK-VKAKKHKDKDEVGSPETEKSEK 556
E++ E+E +E KK+ ++ +E E+ EK E+ +K + ++ E EK
Sbjct: 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEK-RL 316
Query: 557 KKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ +++ +EE + E E E KKK K+ +K EE EE
Sbjct: 317 SRLEEEINGIEER--IKELEEKEERLEELKKKLKELEKRLEELEE 359
Score = 32.7 bits (75), Expect = 0.69
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 477 AKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVK 536
+V + ++ E K K E+ E I+ ++KE ++ ++ E E+ E+ EK++
Sbjct: 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLE 227
Query: 537 AKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDA 596
+ K+ +E+ E ++ + + K E K + E +E K E ++ ++K K+
Sbjct: 228 KEV-KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
Query: 597 EEEEEE 602
E +E+
Sbjct: 287 ELKEKA 292
Score = 31.6 bits (72), Expect = 1.4
Identities = 30/137 (21%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 474 AKKAKVEEVV-EVEKEETVKVKKVKEDEAEEIEVEKK--EKKKKKKKDKENGGADTEVVE 530
+ +EE++ E EKE ++++ E +E E+ ++ + +K+ K+ +E E+ +
Sbjct: 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEK 245
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKK----KDKEVEEAKGV-DNGENVEADKSEK 585
+ E ++ K K ++++ E E KK+ + K KE++E K + + E
Sbjct: 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY 305
Query: 586 KKKKKKKKKDAEEEEEE 602
+ ++ +K EEE
Sbjct: 306 LDELREIEKRLSRLEEE 322
Score = 31.2 bits (71), Expect = 2.0
Identities = 33/150 (22%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 453 KETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKK 512
E ++K + L + ++E+V++ E E + ++ + E +++K +
Sbjct: 459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE 518
Query: 513 KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGV 572
+ +KK +E EK+K K K K E+ S + E + ++ KKK E+E+
Sbjct: 519 ELEKKAEE-----------YEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL-- 565
Query: 573 DNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ +E + +E K+ ++ ++ EE EE
Sbjct: 566 ---DELEEELAELLKELEELGFESVEELEE 592
Score = 30.4 bits (69), Expect = 3.3
Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKK----KKKKKDKENGGADT 526
+A+K E E++K E K +E E +E+ K+ +KK ++E
Sbjct: 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE 666
Query: 527 EVVEKTEKVKAKKHKDKD-EVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEK 585
E +E + ++ + + ++ E E +K+ +K K++ ++ + K ++ E E
Sbjct: 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEEL 726
Query: 586 KKKKKKKKKDAEEE 599
++K KK K +E
Sbjct: 727 REKVKKYKALLKER 740
Score = 30.0 bits (68), Expect = 4.0
Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
E E+ +E T ++K+++++ E E E+K +K+ ++ +K + K + K+
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507
Query: 540 HKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK----KKKKD 595
++K + + E + + ++ +K +++ + KG E +K E+ KKK KK +
Sbjct: 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567
Query: 596 AEEEEEE 602
EEE E
Sbjct: 568 LEEELAE 574
Score = 30.0 bits (68), Expect = 4.4
Identities = 24/148 (16%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
+ K ++EE+ E KE +K K K +E ++ +E + ++ ++ E +
Sbjct: 268 IEELKKEIEELEEKVKE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING 325
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKK----KKKDKEVEEAK-------------GVDN 574
E+ + + ++ + + + E +K+ +++ + EEAK
Sbjct: 326 IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT 385
Query: 575 GENVEADKSEKKKKKKKKKKDAEEEEEE 602
E +E + E +K K++ +++ +
Sbjct: 386 PEKLEKELEELEKAKEEIEEEISKITAR 413
Score = 29.6 bits (67), Expect = 5.8
Identities = 28/130 (21%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
L K K+EE + E EE ++ K + +E EE E KE K+K ++ + E +++
Sbjct: 250 LEGSKRKLEEKI-RELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDE 308
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKK 591
+++ + + ++E+ E E ++K+++ +E+++ E +K+ ++
Sbjct: 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKK------------KLKELEKRLEE 356
Query: 592 KKKDAEEEEE 601
++ E EE
Sbjct: 357 LEERHELYEE 366
Score = 29.3 bits (66), Expect = 7.0
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
E ++ E E + ++K+ KK +E E + +TEK + K+ +E+ +E+ ++ +
Sbjct: 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665
Query: 560 KKKDKEVEEAKGVDNG-ENVEADKSEKKKKKKKKKKDAEEEEE 601
++ + E G+ E +E + E KK +K K++ EE E+
Sbjct: 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 40.0 bits (93), Expect = 0.003
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 459 KKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
K+ K ++ S + +++ + + E ETV+ ++ +E E EVE E + K +
Sbjct: 82 KEFKPTSTDQSLSEPSRRMQEDSGAE---NETVEEEEKEESREEREEVE--ETEGVTKSE 136
Query: 519 KENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENV 578
++N D E +K EK + ++K + GS E E K K E ++G G V
Sbjct: 137 QKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQV 196
Query: 579 EADKSEKKKKKKKKKKDAEEEEE 601
EA K +K K+K+++ E EE
Sbjct: 197 EAGKEFEKLKQKQQEAALELEEL 219
Score = 36.2 bits (83), Expect = 0.043
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEK-EETVKVKKVKEDEAEEIE 505
+ T ++ + +R + SG ++ K E E E+ EET V K ++
Sbjct: 85 KPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDA 144
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
E ++++K+ + ++E + E + K K + S + + + KE
Sbjct: 145 EECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSR---GGAEGAQVEAGKE 201
Query: 566 VEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E+ K +E + E KKK+++++K EEEE+
Sbjct: 202 FEKLKQKQQEAALELE--ELKKKREERRKVLEEEEQR 236
Score = 31.2 bits (70), Expect = 1.9
Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 21/174 (12%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
E + AE ET ++++ + E ++ K+ KE E E
Sbjct: 98 RRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPE 157
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV-GSPETEKS------- 554
E +EK K+ ++ NG T ++ TE ++ + +V E EK
Sbjct: 158 E-----EEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEA 212
Query: 555 ------EKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KKK++++ K +EE + + EAD+ +++++K++ K+ E
Sbjct: 213 ALELEELKKKREERRKVLEEEE--QRRKQEEADRKSREEEEKRRLKEEIERRRA 264
Score = 30.4 bits (68), Expect = 3.1
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 483 VEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKD 542
VE KE +K +E E E++KK ++++K ++E E ++ + + +K +
Sbjct: 196 VEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRL 255
Query: 543 KDEVGSPETEKSEKKKKKKKDKEVEEAK 570
K+E+ E +EK++K +D E+ K
Sbjct: 256 KEEIERRRAEAAEKRQKVPEDGLSEDKK 283
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 39.4 bits (92), Expect = 0.005
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 502 EEIEVEKKEKKKKKKKD--KENGGADTEVVEKTE----KVKAKKHKDKDEVGSPETEKSE 555
+ + EK KK KK D K++ D +++E + KAK K E P T ++
Sbjct: 6 DSLPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNP 65
Query: 556 KKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KK K + ++ A+ + K K EEEEE
Sbjct: 66 KKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEE 112
Score = 39.0 bits (91), Expect = 0.006
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 487 KEETVKVKKVKEDEAEEI-----EVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHK 541
K + K ++ E+I E+E+ EK K KK KE T K +
Sbjct: 17 KPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSA 76
Query: 542 DKDEVGSPETEKSEKK-KKKKKDKEVEEAKGVDNGENVEA 580
E + KS + + + + + E E
Sbjct: 77 ASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEET 116
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 38.5 bits (90), Expect = 0.005
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 464 DASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGG 523
D P KA V++ + E E+ VK ++E +E + E+K K K K K+
Sbjct: 5 DDEEFEPPAPPAKAVVKDKWDDEDED-DDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALK 63
Query: 524 ADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
A E EK ++ K +K + E +PE E +EK + +K +E
Sbjct: 64 AKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 33.1 bits (76), Expect = 0.28
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADT-EVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
+DE E + K K D E+ D + ++ E + ++ K K + + +
Sbjct: 5 DDEEFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKA 64
Query: 557 K-KKKKKDKEVEEAKGVDNGENV-EADKSEKKKKKKKKKKDAE 597
K ++K+K K +E KG+ E D+ +K + +K +++++
Sbjct: 65 KIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEESD 107
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 39.2 bits (91), Expect = 0.005
Identities = 25/151 (16%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 455 TAGVKKRKLDASGDSPALNAKKAK-VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKK 513
+ K+ ++A + + + ++ E E +E K + ++E ++ +++ + ++
Sbjct: 175 DSISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQ 234
Query: 514 KKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVD 573
K ++N + V + ++ K D E ++ + +K++ +K E K D
Sbjct: 235 KADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKND 294
Query: 574 NG--ENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ + + K++ K +K+AE++E E
Sbjct: 295 EEALKAKDHKAFDLKQESKASEKEAEDKELE 325
Score = 35.0 bits (80), Expect = 0.10
Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 474 AKKAKV-EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
AK+A+ +E ++ ++ + K ++ + + + ++ E ++K+++ K K
Sbjct: 212 AKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKE 271
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
+K A+ K + E E +K++++ K KD + + K EA+ E + +KK++
Sbjct: 272 DKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 30.4 bits (68), Expect = 3.2
Identities = 29/152 (19%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
E + + ++L D ++A KA+ ++ + + +V++ + E + K
Sbjct: 207 ESQEDAKRAQQLKEELDKKQIDADKAQ-QKADFAQDNADKQRDEVRQKQQEAKNLPKPAD 265
Query: 512 KKKKKKDKENGGADTEVVEKTEKVKAKK----HKDKDEVGSPETEKSEKKKKKKKDKEVE 567
K+DK+ +EK + K K KD ++S+ +K+ +DKE+E
Sbjct: 266 TSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELE 325
Query: 568 -EAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
+ K E+++ K + + + +DA +
Sbjct: 326 AQKKREPVAEDLQKTKPQVEAQPTSLNEDAID 357
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 39.3 bits (92), Expect = 0.006
Identities = 27/144 (18%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 474 AKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENG----------- 522
++ K++++ +++ K K E++ E+ E E +E +K ++ ++ G
Sbjct: 275 FERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIE 334
Query: 523 GADTEVVEKTEKVKAKKHKDKDEVGSPET--EKSEKKKKKKKDKEVEEAKGVDNGENVEA 580
V + + D+ +P ++ KK KK K +V + + + A
Sbjct: 335 EGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIA 394
Query: 581 --DKSEKKKKKKKKKKDAEEEEEE 602
+ ++ +K + KK EE EE
Sbjct: 395 YYESAKTALEKAEGKKAIEEIREE 418
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 39.2 bits (92), Expect = 0.006
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
+ +E ++E+ + K ++ E E E+EKKE++ +K K+K +K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKF-----------LDKA 136
Query: 536 KAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
K K D S E K KK K+K ++E K V + E K K K
Sbjct: 137 WKKLAKKYDSNLS-EALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSS 195
Query: 596 AEEEEE 601
+ E
Sbjct: 196 NKPELA 201
Score = 35.8 bits (83), Expect = 0.068
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 499 DEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKK 558
+ +IE KKE KK ++K ++ E+ +K E+++ K+K D+ KK
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQLE---AEIEKKEEELEKAKNKFLDKA--------WKKL 140
Query: 559 KKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KK D + EA N + +K K+ K + EE
Sbjct: 141 AKKYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEE 184
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 35.9 bits (83), Expect = 0.007
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 538 KKHKDKDEVGSP--ETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
KK+K K E + +K E K K + + G + + + +K K KK KKD
Sbjct: 3 KKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKD 62
Score = 29.7 bits (67), Expect = 1.2
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 487 KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
+ K K K D+ E+ + K K K+ K K +T K K KDK +
Sbjct: 7 TKTECKEKGCKWDKKED---DGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKD 62
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 39.1 bits (92), Expect = 0.008
Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 2/126 (1%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
+E++E KE ++VK E E +KE+ K++ +++ A+ + E+
Sbjct: 14 GVSSKELLEKLKELGIEVKS--HSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEE 71
Query: 536 KAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
+ + + + ++ +A K+ KKKK K KK
Sbjct: 72 AKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKK 131
Query: 596 AEEEEE 601
+ +
Sbjct: 132 KPKRKA 137
Score = 36.4 bits (85), Expect = 0.053
Identities = 19/102 (18%), Positives = 40/102 (39%)
Query: 501 AEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKK 560
A+E+ V KE +K K+ + + VE+ E K + ++ +E E E++ + +
Sbjct: 10 AKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAE 69
Query: 561 KKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++ K A A +E + + + E
Sbjct: 70 EEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAA 111
Score = 34.1 bits (79), Expect = 0.24
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 511 KKKKKKKDKENGGADTEVVEKTEK--VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEE 568
K + + KE G + E++EK ++ ++ K H V E K E K++ +++ + E
Sbjct: 3 KVRVYELAKELGVSSKELLEKLKELGIEVKSHSST--VEEEEARKEEAKREAEEEAKAEA 60
Query: 569 AKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ EA ++ +A E
Sbjct: 61 EEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEA 94
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 37.7 bits (88), Expect = 0.009
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 487 KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV 546
+EE +K E+E K+KKKKKKK + A E T
Sbjct: 166 EEEVELLKARLEEERA------KKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAG 219
Query: 547 GSPETEKSEKKKKKKKDKE 565
E +K +KK+ D E
Sbjct: 220 QVGEAKKLKKKRSIAPDNE 238
Score = 31.5 bits (72), Expect = 1.1
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
LN + +VE + +EE K KK +KK+KK KK + T
Sbjct: 162 LNPTEEEVELLKARLEEERAKKKK-----------KKKKKKTKKNNATGSSAEATVSSAV 210
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
++ + + + + +K +
Sbjct: 211 PTELSSGAGQVGEAKKLKKKRSIAPDNEKSE 241
Score = 30.4 bits (69), Expect = 2.1
Identities = 12/64 (18%), Positives = 19/64 (29%)
Query: 530 EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
E+ K K KK K K + + +E E+ G K
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDN 237
Query: 590 KKKK 593
+K +
Sbjct: 238 EKSE 241
Score = 29.6 bits (67), Expect = 3.9
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE--VEEAKGVDNGENVEADKSEKKKKKK 590
E+V+ K + ++E + +K +KK KK E + + + + KK
Sbjct: 167 EEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKK 226
Query: 591 KKKKDAEEEEEE 602
KKK + + E
Sbjct: 227 LKKKRSIAPDNE 238
Score = 29.6 bits (67), Expect = 4.2
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
E+E A KK+K A+ V E + +V E + + +
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPD 236
Query: 512 KKKKK 516
+K +
Sbjct: 237 NEKSE 241
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 38.5 bits (89), Expect = 0.010
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 13/153 (8%)
Query: 461 RKLDASGDSPALNAKKAKV------EEVVEVEKEETVKV-KKVKEDEAEEIEVEKKEKKK 513
R LD D P +++K V E EK + V KK K+ + +E + ++KE+ K
Sbjct: 157 RALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDK 216
Query: 514 KKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVD 573
KKK+ E G + A + DE T + + + EA+
Sbjct: 217 DKKKEVE-GFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETK 275
Query: 574 NG-----ENVEADKSEKKKKKKKKKKDAEEEEE 601
+ +K EKKKKKK +
Sbjct: 276 KSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDG 308
Score = 31.2 bits (70), Expect = 1.6
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 532 TEKVKAKKHKDKDEVGSPETEK---SEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKK 588
+EK+ +KH++ + SPE EKK KK K KE K EK+K+
Sbjct: 170 SEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKE----------------KKEKEKE 213
Query: 589 KKKKKKDAEEEEEE 602
+ K KK E +
Sbjct: 214 RDKDKKKEVEGFKS 227
Score = 29.3 bits (65), Expect = 7.2
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 28/133 (21%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGG--------------------ADTEVVEKTEKVKA 537
E+E + +K+K++KKK++KE G D E E
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENALP 144
Query: 538 KKHKDKD--------EVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
DKD ++ + +K +K + E +K + G+ +K KK KK
Sbjct: 145 SDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKK 204
Query: 590 KKKKKDAEEEEEE 602
K+KK+ +E +++
Sbjct: 205 KEKKEKEKERDKD 217
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 38.0 bits (87), Expect = 0.011
Identities = 29/109 (26%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKEN-GGADTEVVE-KTEKVKAKKHKDKDEVGSPE--TEK 553
+D+ ++IE+ + +K+ + +D+ N G + E E KTE+ K K K+ E+ + + E+
Sbjct: 122 DDQDKKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQ 181
Query: 554 SEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++K +++K K +E + N N A + E++K+K + +K +E++
Sbjct: 182 EKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQK 230
Score = 29.9 bits (66), Expect = 4.3
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
A A+ + E A KK +A + + + E+ E EK++T K +
Sbjct: 118 ACFADDQDKKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQI 177
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
+ E EK++ +++K+K E T + ++ ++ K K E + K +K K+
Sbjct: 178 KAEQEKQKTEQEKQK-TEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKDFIKEA 236
Query: 563 DKEVEE 568
++ +E
Sbjct: 237 EQNCQE 242
Score = 28.7 bits (63), Expect = 8.8
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 483 VEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKD 542
+ K+E + E+E E+++ +++K+K ++ G K E+ K K ++
Sbjct: 130 LAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQE 189
Query: 543 KDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K + + + S K + E E+ K E +K + K++K K+AE+ +E
Sbjct: 190 KQKTEQEKQKTSNIANKNAIELEQEKQK-------TENEKQDLIKEQKDFIKEAEQNCQE 242
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 38.3 bits (89), Expect = 0.012
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 32/105 (30%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKK 557
E EAE+ + ++E ++KKKK++ KAK EK+
Sbjct: 5 ESEAEKKILTEEELERKKKKEE----------------KAK----------------EKE 32
Query: 558 KKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KK K + E + + + KK +KK +K+D E+E E
Sbjct: 33 LKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPE 77
Score = 37.6 bits (87), Expect = 0.024
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 494 KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEK 553
+ ++ E E+E+K+KK++K K+KE E K++A++ D G+ +K
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASD----GTNVPKK 61
Query: 554 SEKKKKKKKDKEVEEAKGVD 573
SEKK +K+ ++ +D
Sbjct: 62 SEKKSRKRDVEDENPEDFID 81
Score = 33.7 bits (77), Expect = 0.30
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 20/85 (23%)
Query: 484 EVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDK 543
++ EE ++ KK KE++A+E KE KK K K E K++A++ D
Sbjct: 11 KILTEEELERKKKKEEKAKE-----KELKKLKAAQK----------EAKAKLQAQQASD- 54
Query: 544 DEVGSPETEKSEKKKKKKKDKEVEE 568
K +KK +K+D E E
Sbjct: 55 ----GTNVPKKSEKKSRKRDVEDEN 75
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 36.7 bits (85), Expect = 0.012
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVE 567
K + K KK + ++ +T + K KKHK K E +K +K+KKKKK +
Sbjct: 112 KHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSP 171
Query: 568 EAKGV 572
E GV
Sbjct: 172 EHPGV 176
Score = 35.6 bits (82), Expect = 0.033
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 531 KTEKVKAKKHKDKDEVGSP-----ETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEK 585
K K K KKH+ +D + E K +KK KKK E D+ E K +K
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHE-------DDKER----KKKK 159
Query: 586 KKKKKKKKKDAEEEE 600
K+KKKKKK+ + E
Sbjct: 160 KEKKKKKKRHSPEHP 174
Score = 30.2 bits (68), Expect = 1.9
Identities = 12/54 (22%), Positives = 30/54 (55%)
Query: 549 PETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
P +K + K KK + ++ + + E ++ + + KKKK + K+ +++++E
Sbjct: 108 PPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKE 161
Score = 29.0 bits (65), Expect = 5.4
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 499 DEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGS 548
D EKK KKKK + DKE +K EK K KK + G
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKK------KKKEKKKKKKRHSPEHPGV 176
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 37.9 bits (88), Expect = 0.013
Identities = 14/68 (20%), Positives = 34/68 (50%)
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
+++ +E + ++ KK + K+ A E K ++ K K+ +++ + E EK
Sbjct: 367 RQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEK 426
Query: 557 KKKKKKDK 564
++K ++ K
Sbjct: 427 RQKDERKK 434
Score = 34.0 bits (78), Expect = 0.21
Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 513 KKKKKDKENGG-ADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKG 571
K ++ K N + + E ++ K ++G + E ++ + K KE + +
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 572 VDNGENVEADKSEKKKKKKKKKKD 595
+ + E +K+K++K ++K
Sbjct: 411 ENEKKQKEQADEDKEKRQKDERKK 434
Score = 31.3 bits (71), Expect = 1.7
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 537 AKKHKDKDEVGSP--ETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
K+ + E + K + K + D E + + + +K+K++ + K
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 595 DAEEEEEE 602
+ +++E
Sbjct: 425 EKRQKDER 432
Score = 30.1 bits (68), Expect = 4.0
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 476 KAKVEEVVEVE---KEETVKVKKVKEDEAEEIEVEKK---EKKKKKKKDKENGGADTEVV 529
+ E + E ++ T K+ +VK++ E E K EK K+++ +K+
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQK------- 417
Query: 530 EKTEKVKAKKHKDKD 544
E+ ++ K K+ KD+
Sbjct: 418 EQADEDKEKRQKDER 432
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGG 523
+ K E E E K +K+K++E E+ + E+ ++ K+K++ E
Sbjct: 384 KLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 37.0 bits (86), Expect = 0.013
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
D+A E E K+ ++ + E K E+ +A +DK++ G E E E
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEV--------KEEEKEAANSEDKEDKGDAEKEDEES 91
Query: 557 KKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
+++ +++ E D E +K+E +K
Sbjct: 92 EEENEEEDEESS----DENEKETEEKTESNVEK 120
Score = 34.7 bits (80), Expect = 0.080
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
+ +++E K + E EE++ E+KE + K ++ G A+ E E E+ + +
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDK-EDKGDAEKEDEESEEENEEED 99
Query: 540 HKDKDEVGSPETEKSEKKKKK 560
+ DE EK+E +K
Sbjct: 100 EESSDENEKETEEKTESNVEK 120
Score = 33.6 bits (77), Expect = 0.20
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 459 KKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
+ D + + + A++EEV E EKE K + +AE+ + E +E+ +++ ++
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Query: 519 KENGGADTEVVEKTE 533
+ E EKTE
Sbjct: 102 SSDENE-KETEEKTE 115
Score = 32.8 bits (75), Expect = 0.32
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 542 DKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ E+ KK ++ E+EE K E EA SE K+ K +K+ EE EE
Sbjct: 38 SSPSDQAAADEQEAKKSDDQETAEIEEVK----EEEKEAANSEDKEDKGDAEKEDEESEE 93
Query: 602 E 602
E
Sbjct: 94 E 94
Score = 31.2 bits (71), Expect = 0.95
Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVE 567
+ + + D E E E K++++ + +K +K +K+D+E E
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEV------KEEEKEAANSEDKEDKGDAEKEDEESE 92
Query: 568 EAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
E ++ E+ + ++ E ++K + +
Sbjct: 93 EENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 37.6 bits (87), Expect = 0.016
Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 24/150 (16%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
E K+K A N KK ++ K K+ +D+A+E + + +
Sbjct: 234 EDGDEEKSKKK----KKKLAKNKKKLDDDK----------KGKRGGDDDADEYDSDDGDD 279
Query: 512 KKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVG-SPETEKSEKKKKKKKDKEVEEAK 570
+ +++ + A E+ E + + K E+ ++E+SE++K +++ ++ K
Sbjct: 280 EGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGK 339
Query: 571 GVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
K K KK K D++ +
Sbjct: 340 ---------KLKKLKGKKNGLDKDDSDSGD 360
Score = 37.6 bits (87), Expect = 0.019
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
+ EE + EIE ++ ++ +++K++E GG + K KK
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGG------LSKKGKKLKK 343
Query: 540 HKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
K K K+ K + + +D ++V ++K+K+ KK++
Sbjct: 344 LKGK---------KNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEP 389
Score = 35.3 bits (81), Expect = 0.091
Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVK-------VKKVKEDEAEEI 504
E KK+K A + KK K + ++ ++ + + A
Sbjct: 236 GDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGN 295
Query: 505 EVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK 564
+ E++E K + + +E+ E + + + +E G + + KK K K
Sbjct: 296 DPEEREDKLSPEIPAK------PEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Query: 565 EVEEAKGVDNGENVEADKSEKKKK----KKKKKKDAEEEE 600
+++ D+G++ + + + KK+K+ ++EE
Sbjct: 350 GLDK-DDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEE 388
Score = 34.2 bits (78), Expect = 0.21
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 21/150 (14%)
Query: 474 AKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKK---DKENG--GADTEV 528
K K++++ ++++ + K ED EE +KK+K K KK D + G G D +
Sbjct: 210 GKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDA 269
Query: 529 VEKT----------------EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGV 572
E +++++ SPE + ++ + +E EE K
Sbjct: 270 DEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNE 329
Query: 573 DNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ G + K KK K KK D ++ +
Sbjct: 330 EEGGLSKKGKKLKKLKGKKNGLDKDDSDSG 359
Score = 33.4 bits (76), Expect = 0.37
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 11/146 (7%)
Query: 461 RKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIE-------VEKKEKKK 513
R+ D DS A + E+ + E ++++ ++ E E E + KK KK
Sbjct: 282 REEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKL 341
Query: 514 KKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVD 573
KK K K+NG + + D D S ++K+K+ KK++ V+
Sbjct: 342 KKLKGKKNGLDKDDSDSGDDS----DDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSP 397
Query: 574 NGENVEADKSEKKKKKKKKKKDAEEE 599
E K K K+K + +
Sbjct: 398 GNSGPARPSPESKDKGKRKAANEVSK 423
Score = 32.2 bits (73), Expect = 0.85
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 22/129 (17%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKK--------KKKKDKENGGADTEVVEKTEKVKAKKHKDK 543
V + K AEE E E K +KK K K A + E+TE K + K
Sbjct: 152 PVAQYKTLTAEEAEEEMKRRKKTANGFQLMMMKAAKNGPAAFGDEDEETEGEKGGGGRGK 211
Query: 544 ----------DEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKK 593
DE E++K + ++K K+ K +N + +KK K+
Sbjct: 212 DLKIKDLEGDDEDDGDESDKGGEDGDEEKSKK----KKKKLAKNKKKLDDDKKGKRGGDD 267
Query: 594 KDAEEEEEE 602
E + ++
Sbjct: 268 DADEYDSDD 276
Score = 29.2 bits (65), Expect = 8.0
Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 487 KEETVKVKKVKEDEAEEIEVEKK----EKKKKKKKDKENGGADTEVVEKTEKVKAKKHKD 542
+ + +K+K ++ D+ ++ + K ++K KK K+ + +K + K K
Sbjct: 209 RGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNK---KKLDDDKKGKRGG 265
Query: 543 KDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
D+ +++ + + +++ A G D E + E K + ++ + EE EE
Sbjct: 266 DDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEE 325
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 37.5 bits (87), Expect = 0.018
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV-EKKEKKKKKKKDKENGGADT 526
+ K A +E +K E + K+ AE+ E +++ +K K+ A
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK 112
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKK 586
+ EK ++ + K K E + ++EKK K++ K+ EE + +E K
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Query: 587 KKKKKKKKDAEEEEE 601
KK + + K E +
Sbjct: 173 KKAEAEAKAKAEAKA 187
Score = 36.4 bits (84), Expect = 0.036
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 6/158 (3%)
Query: 444 AAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE 503
AA+Q +++ A K K A + A + K +E + + EE K K E + +
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
E +KK + + K K A+ + K E+ KAK K + + K+E +
Sbjct: 169 AEAKKKAEAEAKAK------AEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAA 222
Query: 564 KEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
E E ++ S +K+ + E
Sbjct: 223 AEAERKADEAELGDIFGLASGSNAEKQGGARGNAAGSE 260
Score = 36.4 bits (84), Expect = 0.042
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 5/135 (3%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKK-----KKKKDKENGGAD 525
A A+K + E ++ E + +AE+ + +EK+K K K+ E
Sbjct: 77 AEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKA 136
Query: 526 TEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEK 585
EK K +AKK +++ E +K + KK E E + +A++++
Sbjct: 137 EAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKA 196
Query: 586 KKKKKKKKKDAEEEE 600
K + K K AE
Sbjct: 197 KAEAAKAKAAAEAAA 211
Score = 35.2 bits (81), Expect = 0.080
Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 18/168 (10%)
Query: 445 AAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE- 503
EQ E E ++ + A K AK + E+ K + K+ +AEE
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAK-------QAEQAAKQAEEKQKQAEEA 124
Query: 504 -----IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKK 558
E + K + + +KK KE E K + K K + E E K +
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAE 184
Query: 559 KKKKDKEVEEAKGVDNGENVEADKSEKKK----KKKKKKKDAEEEEEE 602
K K K EEAK +A K +AE + +E
Sbjct: 185 AKAKAKA-EEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADE 231
Score = 34.4 bits (79), Expect = 0.15
Identities = 21/129 (16%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
V + +++ K +++ +++E + +E +K++ ++ E+ ++
Sbjct: 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQA---RQKELEQRAAAE 101
Query: 536 KAKKHKDKDEVGSPETEK--SEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKK 593
KA K ++ + E +K E K K+ + + + + EA K +++ K K
Sbjct: 102 KAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAA 161
Query: 594 KDAEEEEEE 602
+A+++ E
Sbjct: 162 AEAKKKAAE 170
Score = 31.3 bits (71), Expect = 1.3
Identities = 24/156 (15%), Positives = 58/156 (37%), Gaps = 7/156 (4%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
AA + ++ A +K A + K+ + EE + E + + ++
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
+ E +K+ +++ K K +K + +AK + K++ ++ K K
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK-------AKAKAEEAKAK 197
Query: 563 DKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
+ + + EA+ + + ++K D E
Sbjct: 198 AEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAE 233
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 37.8 bits (88), Expect = 0.019
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKE--------NGGADTEVV 529
E + + +E KV + E E E KKE KK KK E G + E
Sbjct: 460 VKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETY 519
Query: 530 EKTEKVKAKKHK 541
EK E + AKK+
Sbjct: 520 EKLEALLAKKNN 531
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 37.4 bits (87), Expect = 0.025
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 502 EEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKK 561
V KK +KKK N EK K ++++++E + E K+KK
Sbjct: 1494 GNENVNKKINQKKKGFIPSN--------EK--KSIEIENRNQEEKEPAGQGELESDKEKK 1543
Query: 562 KDKEVEEAKGVDNGE-NVEAD--KSEKKKKKKKKKKDAEEEEE 601
+ E + N E N+E D +S+ KK+K KK+ + E E
Sbjct: 1544 GNLE----SVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 36.6 bits (85), Expect = 0.045
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 485 VEKEETVKVKK-VKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKD- 542
V K+ K K + +E + IE+E + +++K+ + +D E E V + + K+
Sbjct: 1498 VNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNI 1557
Query: 543 -KDEVGSPETEKSEKKKKKKKDKEVE 567
+D S ++ KK+ K E E
Sbjct: 1558 EEDYAESDIKKRKNKKQYKSN-TEAE 1582
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 37.1 bits (87), Expect = 0.028
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 476 KAKVEEVVE--VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTE 533
K K+ E++ E E ++ +K +E EA E EK +++ ++KK+K D + E +
Sbjct: 515 KEKLNELIASLEELERELE-QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
Query: 534 KVKAKKHKDKDEVGSPETEKSEKKKKKK---KDKEVEEAKGVDNGENVEADKSEKKKKKK 590
+ + + K E E + +K K E+ EA+ N +EKK+KKK
Sbjct: 574 EAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLN------KANEKKEKKK 627
Query: 591 KKKKDAEEE 599
KK+K+ +EE
Sbjct: 628 KKQKEKQEE 636
Score = 32.5 bits (75), Expect = 0.78
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
AKK E + E+ + + VK E E + +KK+K K+ E ++
Sbjct: 581 EAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVG 640
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGV----DNGENVE-ADKSEKKK 587
++VK K EV S DKE G+ ++E K +KKK
Sbjct: 641 DEVKYLSLGQKGEVLS-----------IPDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKK 689
Query: 588 KKKKKKK 594
KKK K
Sbjct: 690 KKKPKTV 696
Score = 32.1 bits (74), Expect = 1.0
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 34/158 (21%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
A + E++ E +E+ K+++ ++ EE E E ++ K+ KK+ + + ++
Sbjct: 538 EAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQ 597
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEA--------------KG----- 571
K K H+ + +K+KKKKK KE +E KG
Sbjct: 598 KGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSI 657
Query: 572 VDNGE-NVEAD--------------KSEKKKKKKKKKK 594
D+ E V+A + KKKKKKK K
Sbjct: 658 PDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPKT 695
Score = 30.6 bits (70), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 481 EVVEVEKEETVKVK------KVKEDEAEEIEVEKKEKKKKKKKDKEN 521
EV+ + ++ V+ KV + E+I+ KK+KKKK K K
Sbjct: 653 EVLSIPDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPK 699
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 36.9 bits (86), Expect = 0.029
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 500 EAEEIEVEKKEKKKKKKKD---KENGGADTEVVEKTEKVKAKKHKDKD-------EVGSP 549
AEEI+++ E ++ K KE + V + E++K K K
Sbjct: 292 PAEEIDLKWNEPDEEGLKKFLVKEKNFNEERVEKYIERLKKAKTKKTQTRLDSFFTATKK 351
Query: 550 ETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKK 591
+KS K K KK K+ A V E + KS KKK KK
Sbjct: 352 PIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 37.1 bits (86), Expect = 0.031
Identities = 22/135 (16%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Query: 458 VKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKV-KKVKEDEAEEIEVEKKEKKKKKK 516
+++ K +N K+ + + +++ + K +KE E + E+E++ ++ K++
Sbjct: 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558
Query: 517 KDKENGGADTEVVEKTEKVK---AKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVD 573
+ + + E E + +K ++ E K K + + + K
Sbjct: 559 ERNKKLELEKEAQEALKALKKEVESIIRELKE-KKIHKAKEIKSIEDLVKLKETKQKIPQ 617
Query: 574 NGENVEADKSEKKKK 588
N +ADK K +
Sbjct: 618 KPTNFQADKIGDKVR 632
Score = 30.2 bits (68), Expect = 4.0
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 467 GDSPALN-AKKAKV-EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGA 524
G+S A A++ + ++E K E + E + +K +K+ +++N
Sbjct: 481 GESYAFEIAQRYGIPHFIIEQAKT------FYGEFKEEINVLIEKLSALEKELEQKN--- 531
Query: 525 DTEVVEKTEKVKAKKHKDKDEVGS--PETEKSEKKKKKKKDKEVEEA--KGVDNGENVEA 580
E EK+ ++ K K E+ E ++ E+ KK + +KE +EA E++
Sbjct: 532 -----EHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIR 586
Query: 581 DKSEKKKKKKKKKKDAE 597
+ EKK K K+ K E
Sbjct: 587 ELKEKKIHKAKEIKSIE 603
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 37.0 bits (86), Expect = 0.036
Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 479 VEEVVEVEKEETVKVKKVKE--DEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVK 536
+++++E E+E ++ +E E E++K K++ + ++ + E+ +
Sbjct: 808 IDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
Query: 537 AKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDA 596
+ + E +K K K+V + + E + +K+ KKKKK +K D
Sbjct: 868 NENKNEFVEF----KNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDE 923
Query: 597 E 597
E
Sbjct: 924 E 924
Score = 35.0 bits (81), Expect = 0.14
Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 12/118 (10%)
Query: 493 VKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE 552
+ ++ E E E ++ + ++++ + +E +K K + K + + E E
Sbjct: 808 IDQIIESEEERLKALRIQREEMLMRPEELE--LINEEQKNLKQEIKLELSEIQ--EAEEE 863
Query: 553 KSEKKKKKKKDKEVEEAKGVDNGENVEADKSEK--------KKKKKKKKKDAEEEEEE 602
+ K + E + N + D K K+ +K KK ++ E+
Sbjct: 864 IQNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKT 921
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 35.1 bits (81), Expect = 0.036
Identities = 19/81 (23%), Positives = 25/81 (30%)
Query: 522 GGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEAD 581
G TE V K+ K K G+ T K + K K + D G EA
Sbjct: 63 GAQPTEPVLALLKITGDWQKFKGLPGAEGTLKVAEPKPSKLELFNAALAEADGGPTAEAT 122
Query: 582 KSEKKKKKKKKKKDAEEEEEE 602
+KKK +
Sbjct: 123 TPKKKKAAAEAAAAEAAAPAA 143
>gnl|CDD|129543 TIGR00451, unchar_dom_2, uncharacterized domain 2. This
uncharacterized domain is found a number of enzymes and
uncharacterized proteins, often at the C-terminus. It is
found in some but not all members of a family of related
tRNA-guanine transglycosylases (tgt), which exchange a
guanine base for some modified base without breaking the
phosphodiester backbone of the tRNA. It is also found in
rRNA pseudouridine synthase, another enzyme of RNA base
modification not otherwise homologous to tgt. It is
found, again at the C-terminus, in two putative
glutamate 5-kinases. It is also found in a family of
small, uncharacterized archaeal proteins consisting
mostly of this domain.
Length = 107
Score = 33.9 bits (78), Expect = 0.041
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 279 VMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
++D + LY Y D+ + L+ K +VV + V + GA +M PG++ +
Sbjct: 2 LVDGEPLYFIYDDKVIPS--LKGALKLMEDKKIVVVDNGAVKFLKNGADVMRPGIVDADE 59
Query: 339 DIEVGEEVVLMT-TKGEAVALGIAEMTTAVMATCDHG 374
DI+ G++VV++ K +A+GIA M+ M D G
Sbjct: 60 DIKEGDDVVVVDENKDRPLAVGIALMSGEEMKEMDKG 96
>gnl|CDD|234310 TIGR03684, arCOG00985, arCOG04150 universal archaeal PUA-domain
protein. This universal archaeal protein contains a
domain possibly associated with RNA binding (pfam01472,
TIGR00451).
Length = 150
Score = 34.9 bits (81), Expect = 0.044
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT-TKGEAVALGIAEMTTAVM 368
+VV + V I GA +M PG++ + I+ G+ V ++ T G+ +A+GIA M M
Sbjct: 70 NVVVVDEGAVKFIINGADIMAPGIVEADPSIKEGDIVFVVDETHGKPLAVGIALMDAEEM 129
Query: 369 ATCDHGVVAR 378
G +
Sbjct: 130 VEEKKGKAVK 139
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 36.4 bits (84), Expect = 0.048
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
L+ + AK EE E + + + +V ++ KK K +++E E
Sbjct: 1167 KLDKEDAKAEEAREKLQRA-----AARGESGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEA 569
+T A + ++ EV P+ KKK KE EE
Sbjct: 1222 ETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEE 1260
Score = 34.5 bits (79), Expect = 0.21
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEK--------KEKKKKKKKDKENG- 522
L A + K+ VE K+ T K +K+ +A E E++K +E ++K ++ G
Sbjct: 1131 LCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLDKEDAKAEEAREKLQRAAARGE 1190
Query: 523 -GADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEAD 581
GA +V + K A K K S TE++ + + + E V+
Sbjct: 1191 SGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE---------NVAEVVKPK 1241
Query: 582 KSEKKKKKKKKKKDAEEEEEE 602
KKK +EEE+E
Sbjct: 1242 GRAGAKKKAPAAAKEKEEEDE 1262
Score = 32.9 bits (75), Expect = 0.63
Identities = 47/214 (21%), Positives = 74/214 (34%), Gaps = 18/214 (8%)
Query: 397 PRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETA 456
P+ + KK +E + +G +T E VV P G AAA++ E E
Sbjct: 1207 PKKTTKKASESETTEETYGSSAMET--ENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEIL 1264
Query: 457 GVKKRKLDASGDS-PALNAKKAKVEEVVEVEKEETVKVKKV-------KEDEAEEIEVEK 508
+K R + DS PA +AK + + V + K +D+ ++ VE
Sbjct: 1265 DLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEV 1324
Query: 509 KEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEE 568
++ KKK A KA K + P T +S +K + K E
Sbjct: 1325 SLAERLKKKGGRKPAA--------ANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEA 1376
Query: 569 AKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ + S KK A +E
Sbjct: 1377 IGISPEKKVRKMRASPFNKKSGSVLGRAATNKET 1410
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 36.2 bits (84), Expect = 0.050
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
EI + K+EK + N G E+ + + +D + +K+K +K
Sbjct: 215 EININKEEKNNGSNVN--NNGNKNNKEEQKGNDLSNELEDISLGP----LEYDKEKLEKI 268
Query: 563 DKEVEEAKGVDNGENV-EADKSEKKKKKKKKKKDAEEE 599
E+AK + G ++ D K K K ++ + +
Sbjct: 269 KDLKEKAKKL--GISIILFDDMTKNKTTNYKIQNEDPD 304
Score = 30.8 bits (70), Expect = 2.5
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 485 VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKD 544
+ KEE V + + + E+K + + + G EK EK+K K K K
Sbjct: 218 INKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAK- 276
Query: 545 EVGSPETEKSEKKKKKKKDKEVEE 568
++G + K K + +++
Sbjct: 277 KLGISIILFDDMTKNKTTNYKIQN 300
Score = 29.3 bits (66), Expect = 7.0
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
+N K + + + + +++ + E + EK EK K K+ + G + +
Sbjct: 228 NVNNNGNKNNKEEQKGNDLSNELEDISLG-PLEYDKEKLEKIKDLKEKAKKLGISIILFD 286
Query: 531 KTEKVKAKKHKDKDE 545
K K +K ++E
Sbjct: 287 DMTKNKTTNYKIQNE 301
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 36.3 bits (84), Expect = 0.051
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%)
Query: 487 KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDK--- 543
++++ +D +++ KK +K KK+K+ D K K+K KK K
Sbjct: 29 SSYKIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLH 88
Query: 544 -DEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
D+ + K+ + + K K KKKK ++E
Sbjct: 89 IDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDE 148
Score = 32.9 bits (75), Expect = 0.58
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 20/122 (16%)
Query: 483 VEVEKEETVKV--KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKH 540
+++ K+ K+ K K ++ ++++ KK K K+KKK K+ D + + K
Sbjct: 46 LDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQ 105
Query: 541 KDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
S + K K +K K+ + K KKKKK ++
Sbjct: 106 FAGPLAISL---MRKPKPKTEKLKKK---------------ITVNKSTNKKKKKVLSSKD 147
Query: 601 EE 602
E
Sbjct: 148 EL 149
Score = 30.2 bits (68), Expect = 3.7
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
N K K +++ + +K + + KK+K+ ++ ++ K+ A +
Sbjct: 60 NKKFNKTDDLKDSKKTKLKQKKKIKK----KLHIDDDYDNFFDSKNNSKQFAGPLAISLM 115
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDN 574
K K K K K ++ KS KKKKK +E DN
Sbjct: 116 RKPKPKTEKLKKKIT---VNKSTNKKKKKVLSSKDELIKYDN 154
Score = 30.2 bits (68), Expect = 4.2
Identities = 19/133 (14%), Positives = 39/133 (29%)
Query: 470 PALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVV 529
P + +E + + + ++ +++KK KK K D ++
Sbjct: 20 PLFIKNLKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQ 79
Query: 530 EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
+K K K D D + + + + + KKK
Sbjct: 80 KKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKK 139
Query: 590 KKKKKDAEEEEEE 602
KK +E +
Sbjct: 140 KKVLSSKDELIKY 152
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 35.8 bits (83), Expect = 0.054
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE------VEEAKGVDNGENVEADKSEKK 586
+ +++ K + + + ++KK KK K + E + + + +KK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 587 KKKKKKKKDAEEEEEE 602
KKKKKKKK E +
Sbjct: 61 KKKKKKKKKNLGEAYD 76
Score = 33.5 bits (77), Expect = 0.37
Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 486 EKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
E + + ++ + + + KK+ KK KK ++ E++ + ++ + K++
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNN---- 56
Query: 546 VGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
KKKKKKK K+ ++ GE + +D
Sbjct: 57 ----------KKKKKKKKKKKKKNL----GEAYDLAYDLPVVWSSAAFQDNS 94
Score = 29.7 bits (67), Expect = 4.5
Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 17/147 (11%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKK-----VKEDEA---------EEIEVEKKEKKKKKKKD 518
N + ++ + +++ T K K V +D+A +E E ++ KKKKKKK
Sbjct: 5 NGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKK 64
Query: 519 KENGGADTEVVEKTEKVKAKKHKDKDEVGSP---ETEKSEKKKKKKKDKEVEEAKGVDNG 575
K+ E + + + S E++ K+ + + +K +G
Sbjct: 65 KKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEWKQTQPPTIPVSKQFKDG 124
Query: 576 ENVEADKSEKKKKKKKKKKDAEEEEEE 602
E + E + + E+ E E
Sbjct: 125 EYPVGEIQEYPGENSSRTSSEEKRELE 151
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 36.3 bits (83), Expect = 0.055
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 469 SPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEV 528
+ L A + +K ET ++K+ E E K+ + KK K D + D
Sbjct: 415 TSHLPASNESESD----DKLET-TIEKLDRKLRERQENRKERQLKKTKDDSDVDLKD--- 466
Query: 529 VEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKK 588
K E + K K K + K E + K D++ E+ +D+ + K+EK KK
Sbjct: 467 --KKESINKKNKKGKHAIERTAASKEELELIKADDEDDEQ---LDHFDMKSILKAEKFKK 521
Query: 589 KKKKKKDAEEEEE 601
+K KK A EE
Sbjct: 522 NRKLKKKASNLEE 534
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 36.0 bits (83), Expect = 0.058
Identities = 21/118 (17%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 488 EETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVG 547
EE + +K+D+ EE E K+++++++ + E + ++E
Sbjct: 385 EEVISKYAMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEES 444
Query: 548 SPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK---KKKKDAEEEEEE 602
E E+ E+++++++ + EE + E + +++ + + D EE EE+
Sbjct: 445 VEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEED 502
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 36.0 bits (83), Expect = 0.061
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD-------------KENGGAD 525
+ E+++ ++ K + K++E +E K + K + KE G
Sbjct: 360 ISELLKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKI 419
Query: 526 TEVVEKTEKVKAKKHKDKDEVGSP----ETEKSEKKKKKKKDKEVEEAKGVDNGENVEAD 581
T VEK+E+ + P E K EK+K+K++ + VE+ + G +
Sbjct: 420 TIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSKIITY 479
Query: 582 KSEKKK 587
K +K K
Sbjct: 480 KKKKGK 485
Score = 32.1 bits (73), Expect = 1.0
Identities = 20/106 (18%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPET 551
+ K + E E + E+KE+ K + + +++ + +K + K+++ + +
Sbjct: 366 EGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKII--SAILKNAEIKEEEGKITIKV 423
Query: 552 EKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
EKSE+ + K +++ E V+ +K ++K++ + +K E
Sbjct: 424 EKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLE 469
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 36.1 bits (83), Expect = 0.064
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 509 KEKKKKKKKDKENGGADTEVVEKTEKVKAKKHK-DKDEVGSPETEKSEKKKKKKKDKEVE 567
+ ++KD E +E EKV KK + D V SP E+S ++ K EV+
Sbjct: 12 NNNDRMQEKDDEKQ-DQKNRMELKEKVLDKKEEVVTDNVDSPVKEQS-SQENLKIADEVK 69
Query: 568 EAKGVDNGENVEADKSEKKKKKK 590
++ ++ + +E K++++ +K+
Sbjct: 70 KSTKEESKQLLEVLKTKEEHQKE 92
Score = 30.3 bits (68), Expect = 3.8
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 541 KDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
+ D + + EK ++K + + ++V + K +NV++ E+ ++ K D
Sbjct: 12 NNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIAD 66
Score = 29.1 bits (65), Expect = 7.7
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEE-----AKGVDNGENVEADKSEKK 586
+ KD ++ + ++K KK++ V + K + EN++ KK
Sbjct: 11 INNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKK 70
Query: 587 KKKKKKK------KDAEEEEEE 602
K++ K K EE ++E
Sbjct: 71 STKEESKQLLEVLKTKEEHQKE 92
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 35.5 bits (83), Expect = 0.070
Identities = 23/131 (17%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAE----EIEVEKKEKKKKKKKDKENGGADTEVVEK 531
K E ++ +EE ++ + + EAE E +E KE+ K + + E E+ E+
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEK-----ELRER 80
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKK 591
+++ + + + E + + +K+++E+E+ + E + + +K+++ ++
Sbjct: 81 RNELQKLEKRLLQKE---ENLDRKLELLEKREEELEKKE--KELEQKQQELEKKEEELEE 135
Query: 592 KKKDAEEEEEE 602
++ +E E
Sbjct: 136 LIEEQLQELER 146
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 34.4 bits (79), Expect = 0.073
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 488 EETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVG 547
EE+ K +K E EE E K +K+KK+KK+K +V EK K K+ K
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEK-------KVAEKLAKKKSTKTTKNTTKK 145
Query: 548 SPETEKSEKKKKK 560
+ + ++K++ K
Sbjct: 146 ATKKTTTKKEEGK 158
Score = 28.6 bits (64), Expect = 5.5
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 541 KDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
+ + + S ETE+ E K KK+ KE +E K + ++ K+ K KK KK ++E
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 601 EE 602
E
Sbjct: 156 EG 157
Score = 28.2 bits (63), Expect = 8.2
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTE 527
+S + +K E E K + K +K ++ AE++ KKK K +N
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKL------AKKKSTKTTKNTTKKAT 147
Query: 528 VVEKTEKVKAK 538
T+K + K
Sbjct: 148 KKTTTKKEEGK 158
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 35.8 bits (81), Expect = 0.077
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 448 QTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVE 507
+T E+E ++ + + D + + + E V E KEE E +AE+++
Sbjct: 136 KTSKEEENPEIEAEDGEPAKDDGIEESHQEEDEIVSESSKEEF-----TAEVKAEDLQPA 190
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAK--KHKDKDEVGSPETEKSEKKKKKKKDKE 565
+ + + TE E +VKA+ + D+V E+E +K + K++E
Sbjct: 191 VDGSIEHSSSEVGEEVSKTEKEESNPEVKAEDLQPAVDDDVAHHESEVGDKPAETSKEEE 250
Query: 566 VEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
E K D V+ + ++ + + E+EE
Sbjct: 251 TPEVKAEDLQPAVDGSVEHSSSEIEEHQGETEKEE 285
Score = 32.3 bits (72), Expect = 0.84
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 7/156 (4%)
Query: 448 QTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEET---VKVKKVKEDEAEEI 504
++ E+ TA VK L + D ++ EEV + EKEE+ VK + ++ +++
Sbjct: 172 ESSKEEFTAEVKAEDLQPAVDGSIEHSSSEVGEEVSKTEKEESNPEVKAEDLQPAVDDDV 231
Query: 505 EVEKKE-KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
+ E K + KE + + + V E+ + E +EK++ +
Sbjct: 232 AHHESEVGDKPAETSKEEETPEVKAEDLQPAVDGSVEHSSSEIEEHQGE-TEKEEGIPES 290
Query: 564 KEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEE 599
+ VD + VE SE +++ + +EE
Sbjct: 291 HAEDLQPAVD--DIVEHPSSEPFVAEEEVSETEKEE 324
Score = 30.8 bits (68), Expect = 2.8
Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 19/185 (10%)
Query: 419 EKTPQEWARNVVLPPGGDSVVASLAAAAE---QTVAEKETAGVKKRKLDASGDSPALNAK 475
E P+ A ++ P D V + + +T E+ET VK L + D ++
Sbjct: 213 ESNPEVKAEDL-QPAVDDDVAHHESEVGDKPAETSKEEETPEVKAEDLQPAVDGSVEHSS 271
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
E E EKEE + E AE+++ + + + + EK E
Sbjct: 272 SEIEEHQGETEKEEGIP-----ESHAEDLQPAVDDIVEHPSSEPFVAEEEVSETEKEENN 326
Query: 536 KAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
+D + E+ S++ + +++E E +E + E +K++ +
Sbjct: 327 PEVLAEDLQDAADGESGVSDQPAQVVEERESE----------IEEHQGETEKEEGIPESH 376
Query: 596 AEEEE 600
AE++E
Sbjct: 377 AEDDE 381
Score = 29.6 bits (65), Expect = 5.6
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Query: 448 QTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKE-DEAEEIEV 506
+ E+ TA VK L + D ++ EEV E EKEE+ K ++ A + +
Sbjct: 473 EPSKEEFTAEVKAEDLQPAVDGSVEHSSSEVGEEVSETEKEESNPEIKAEDLPPAVDDSL 532
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEV 566
E + +K D+ V + A + + E +++ +
Sbjct: 533 EHSIPEVGEKVDEMFAEEFNPEVIAEDLQPAVDGSVEHSSSEVGDKVCETCEEEFTPEIK 592
Query: 567 EEAKGVDNGENV 578
+++ V +GE++
Sbjct: 593 ADSQPVADGEDI 604
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 35.4 bits (82), Expect = 0.077
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 469 SPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEV 528
S K++E ++ K + ++KK E I K++ K K ++D E A+ +
Sbjct: 272 SKTHEKSMEKLQEKIKALKYQLKRLKK-MILLFEMISDLKRKLKSKFERDNEKLDAEVKE 330
Query: 529 VEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
+K +K + KK K + + E+ EK + + DKE
Sbjct: 331 KKKEKKKEEKKKKQIERL----EERIEKLEVQATDKE 363
Score = 33.1 bits (76), Expect = 0.40
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 493 VKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE 552
V K E E+++ + K K + K+ K+ + + K+K+K +D E
Sbjct: 271 VSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDN------EKL 324
Query: 553 KSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
+E K+KKK+ K+ E+ K +K E + K++ K
Sbjct: 325 DAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENKT 367
>gnl|CDD|224466 COG1549, COG1549, Queuine tRNA-ribosyltransferases, contain PUA
domain [Translation, ribosomal structure and
biogenesis].
Length = 519
Score = 35.5 bits (82), Expect = 0.080
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 331 PGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVV 383
PG++ + DI +EVV++ GE +G A M+ M G+ R++R
Sbjct: 467 PGVVDADEDIRPNDEVVVVHG-GEVRGVGRAVMSGREMVEAKKGIAVRVRRRK 518
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 35.3 bits (82), Expect = 0.082
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 430 VLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEE 489
V P G SL VAE +G +K S +EE+ E +EE
Sbjct: 28 VEYPDGWREPPSLYLL---VVAE---SGERK--------SAVDKLAMKPLEEIEEELREE 73
Query: 490 TVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
+ K E E E E EKK +KK KK + G D E + +
Sbjct: 74 YEEELKEYEAEKEIWEAEKKGLEKKAKKAIK-KGKDEEALAEELLELEA 121
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 35.3 bits (82), Expect = 0.088
Identities = 42/191 (21%), Positives = 60/191 (31%), Gaps = 29/191 (15%)
Query: 436 DSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNA--KKAKVEEVVEVEKEETVKV 493
D+V A+LA + A + +K + A K E +
Sbjct: 486 DAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADP 545
Query: 494 KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV-------KAKKHK---DK 543
KK A + K KK + N A+ EV K V KAKK
Sbjct: 546 KKAAVAAAIA-----RAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAAS 600
Query: 544 DEVGSPETEKSEKK------------KKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKK 591
E E KK KK ++ E + VD + A + K +K
Sbjct: 601 AEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKA 660
Query: 592 KKKDAEEEEEE 602
++ A E EE
Sbjct: 661 AQQQANAEPEE 671
Score = 33.8 bits (78), Expect = 0.29
Identities = 35/181 (19%), Positives = 56/181 (30%), Gaps = 33/181 (18%)
Query: 440 ASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKED 499
A AAE A+ D A+ A A+V+ + V + D
Sbjct: 471 ARHKKAAEARAAK---------------DKDAVAAALARVKAKKAAATQPIVIKAGARPD 515
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT------EKVKAKKHKDKDEVGSPETEK 553
+ I + K + + + E A +K + KAKK + E E
Sbjct: 516 NSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEV 575
Query: 554 SEKKKK------KKKDKEVEEAKGVDNGENVEADKSEKKKK------KKKKKKDAEEEEE 601
KK + K K+ + E A+ KK + K KK ++
Sbjct: 576 DPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANA 635
Query: 602 E 602
E
Sbjct: 636 E 636
Score = 33.4 bits (77), Expect = 0.40
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 24/117 (20%)
Query: 494 KKVKEDEAEE--------IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
+K K +EA+ +E EK ++ + KK E A+ KDKD
Sbjct: 444 EKKKAEEAKARFEARQARLEREKAAREARHKKAAE----------------ARAAKDKDA 487
Query: 546 VGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
V + KK + ++ DN + A ++ K + + ++ + +
Sbjct: 488 VAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAAD 544
Score = 32.2 bits (74), Expect = 0.83
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 5/118 (4%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
AA +E KK + A+ AKKA + +E+ +V K A
Sbjct: 562 AAQQAANAEAEEEVDPKKAAVAAA--IARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAA 619
Query: 503 EIEVEKKEKKKKKKKDKENGGAD---TEVVEKTEKVKAKKHKDKDEVGSPETEKSEKK 557
I K +K +++ + D V + KA+K + PE + KK
Sbjct: 620 AIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKK 677
Score = 30.7 bits (70), Expect = 2.9
Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKK 557
E E E K+ + + ++ V +VKAKK + + +
Sbjct: 463 EREKAAREARHKKAAEARAAKDKDA-----VAAALARVKAKKAAATQPIVIKAGARPDNS 517
Query: 558 KKKKKDKEVEEAKGVDNGENVEADKSEKKKKK--------KKKKKDAEEEEEE 602
+ + E A ++ KK K KK + E
Sbjct: 518 AVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAE 570
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 34.5 bits (79), Expect = 0.093
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 459 KKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
K + + + K + VE+ E + + IE ++ KKK KK
Sbjct: 52 KSKGRGIVKGDIEIEKDEGKKKTYVEITFE-----NNKGKLKLRLIEESRELTKKKGKKV 106
Query: 519 KENGGADTEVVEKTEKVKAKKHKDKDEVG------------SPETEKSEKKKKKKKDKEV 566
K++ E+ E E + DK+ + K +K++ ++ +KE+
Sbjct: 107 KKSILEIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKEL 166
Query: 567 EEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
EE + + ++ EKKK+ ++ K++ EE EE
Sbjct: 167 EELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 34.9 bits (80), Expect = 0.097
Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 15/161 (9%)
Query: 436 DSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKK 495
V+A++ AA + A+ A +K AS + + K +K +K V
Sbjct: 188 GRVLAAVGAANAKKAAKTPAAKSGAKK--ASAKAKSAAKKVSK-------KKAAKTAVSA 238
Query: 496 VKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSE 555
K + K KK KK K+ + V+K K KA K K G+ + K +
Sbjct: 239 KKAAKTA-----AKAAKKAKKTAKKALKKAAKAVKKAAK-KAAKAAAKAAKGAAKATKGK 292
Query: 556 KKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDA 596
K KKK K+ ++ KK KK KK A
Sbjct: 293 AKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKRA 333
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 35.3 bits (81), Expect = 0.10
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 7/143 (4%)
Query: 462 KLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
K + ++ K+A+ EE + E +T + + K+ K +K N
Sbjct: 367 KEVFEDQASSVKNKQAQSEENLN-ESPKTPIAVTGDPHLKDPTIIAGKKLMNKLTSEKIN 425
Query: 522 GGADTEVVEKTEKVKAKKHKD----KDEVGSPETEKSEKKKKKKKDKEVEEAKGVDN--G 575
V K + K++K +D SP +++ KK K K +++ K V N
Sbjct: 426 NPVKVVKVSKYKGNKSEKKRDINVLDTIFASPVSKELRKKVGKSKQTKLKNFKPVPNKSK 485
Query: 576 ENVEADKSEKKKKKKKKKKDAEE 598
+ + + S+ K KK K
Sbjct: 486 KQLANNNSQNIKSKKVVKAKTNN 508
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 35.4 bits (82), Expect = 0.11
Identities = 35/148 (23%), Positives = 52/148 (35%), Gaps = 4/148 (2%)
Query: 451 AEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKE 510
EK V+ SG +L KA++ VV V ++ K + +E++ KK+
Sbjct: 527 VEKLLDEVELLTGANSGGKTSLLELKAQI--VVLAHMGLPVPAEEAKVEAVDEVKFLKKK 584
Query: 511 KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
K E+ D + E K +K K DEV E K E
Sbjct: 585 KGILDAGAFESTLKDKKNKVLPEA-KKRKLKLGDEVEVITGEPGAVVKIIAGILEALVQS 643
Query: 571 GVDNGENVEADKSEKKKKKKKKKKDAEE 598
G+ V E K++ K K E
Sbjct: 644 GI-LKVIVSHLDLEIIKEEPKVKVKGIE 670
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 33.8 bits (78), Expect = 0.12
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
++ E E+EE V+V+++ E+E + +EK+ K K++K +EN
Sbjct: 98 KKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRREN 139
Score = 33.4 bits (77), Expect = 0.14
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKE 520
K E+ E E+E V+ +E E +E E + K++K+++ E
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 29.2 bits (66), Expect = 3.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 552 EKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KK+K++++E E + E + EK+ K K++K E E ++
Sbjct: 93 LLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 34.0 bits (78), Expect = 0.12
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 470 PALNAKKAKVEEVV------EVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGG 523
P L KA +++ E E+E+ + VK E E+ E +E +K+K+ +
Sbjct: 18 PKLEEAKANMQKTFIIKKADEKEEEKENSDEHVKSKEEEQKI-EYEEAEKEKEAGEPERE 76
Query: 524 ADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEE 568
E EK E + ++ +++ E + S K+KK K+ +EE
Sbjct: 77 DIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKPFKEMNLEE 121
Score = 33.3 bits (76), Expect = 0.19
Identities = 22/89 (24%), Positives = 47/89 (52%)
Query: 511 KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
KK +K++E +D V K E+ K + + + E + E E+ + ++++K++ +E +
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 571 GVDNGENVEADKSEKKKKKKKKKKDAEEE 599
+ E+V+ + K+KK K+ EE
Sbjct: 93 KEEEAEDVKQQEVFSFKRKKPFKEMNLEE 121
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 34.9 bits (81), Expect = 0.13
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVE 567
K + ++++ ENG E+ K +K + +K +KK ++ E
Sbjct: 390 KPLLAEGEEEEGENGNLS-----PAERKKLRKKQ---------------RKAEKKAEKEE 429
Query: 568 EAKGVDNGENVEADKSEKKKKKKKKKKD 595
K + A K K + KK D
Sbjct: 430 AEKAAAKKKAEAAAKKAKGPDGETKKVD 457
Score = 33.4 bits (77), Expect = 0.39
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 538 KKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
+++E + +E+KK +KK + E K E EA+K+ KKK + K A+
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQR-KAEKK----AEKEEAEKAAAKKKAEAAAKKAK 447
Query: 598 EEEEE 602
+ E
Sbjct: 448 GPDGE 452
Score = 30.3 bits (69), Expect = 3.0
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 26/92 (28%)
Query: 497 KEDEAEEIEVE-------KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSP 549
E E EE E KK +KK++K +K K EK +A+K K
Sbjct: 394 AEGEEEEGENGNLSPAERKKLRKKQRKAEK-----------KAEKEEAEKAAAKK----- 437
Query: 550 ETEKSEKKKKKKKDKEVEEAKGVD-NGENVEA 580
+ KK K + D GE +
Sbjct: 438 --KAEAAAKKAKGPDGETKKVDPDPLGEKLAR 467
Score = 29.1 bits (66), Expect = 8.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 560 KKKDKEVEEAKGVDNGEN-VEADKSEKKKKKKKKKKDAEEEE 600
K E EE +G + + E K KK++K +KK + EE E
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAE 431
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.7 bits (80), Expect = 0.16
Identities = 24/133 (18%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEV------- 528
KAK+EE+ E ++ + E EE++ KK ++ ++++++E + E
Sbjct: 184 KAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAE 243
Query: 529 VEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKK 588
+E+ ++ + E+ S E E + ++++ ++ E + + E +E + E ++
Sbjct: 244 LEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEEL 303
Query: 589 KKKKKKDAEEEEE 601
+++ + EE
Sbjct: 304 EEELEGLRALLEE 316
Score = 34.4 bits (79), Expect = 0.20
Identities = 23/132 (17%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKE-KKKKKKKDKENGGADTEVVE 530
L A + +++E+ ++E+ + + ++ E E E +E E +++K++ ++
Sbjct: 205 LEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESL 264
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
+ E +K ++ + ++ E + + ++ ++ ++E+EE + G ++ E+ +K
Sbjct: 265 ELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKL 324
Query: 591 KKKKDAEEEEEE 602
K ++ E+ EE
Sbjct: 325 KSLEERLEKLEE 336
Score = 32.8 bits (75), Expect = 0.58
Identities = 26/154 (16%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
N +EE ++ +E +++K E E ++ ++ ++ K++ E A E+ E+
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411
Query: 532 TEKVKAKK-------HKDKDEVGSPETEKSEKKKKKKKDKEV----------------EE 568
E+++ + + ++E+ E + ++ + K+ E+ E
Sbjct: 412 LEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH 471
Query: 569 AKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K + +E ++ E++ ++K++ + EE EE
Sbjct: 472 EKELLELYELELEELEEELSREKEEAELREEIEE 505
Score = 30.1 bits (68), Expect = 3.8
Identities = 32/171 (18%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 441 SLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEV---VEVEKEETVKVKKVK 497
S + E V ++L + L + ++EE+ + EKEE ++++
Sbjct: 445 SKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIE 504
Query: 498 EDEAEEIEVEKK------EKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPET 551
E E E E+E++ ++ K++ +E ++E+ E++K K +
Sbjct: 505 ELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQ-------- 556
Query: 552 EKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K E ++ + + +E++E ++ E+ +++ K+ K +E EE
Sbjct: 557 LKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEE 607
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 34.6 bits (79), Expect = 0.16
Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 29/168 (17%)
Query: 464 DASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGG 523
+ D + + ++ +ET ++ K +E E E ++ ++ ++K + G
Sbjct: 130 EMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSG 189
Query: 524 AD------------TEVVEKTEKVKAKKHKDKDEV--------------GSPETEKSEKK 557
D E E E+ D ++ GS E E+ +++
Sbjct: 190 VDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEE 249
Query: 558 KKKKKDK---EVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ + E+ K D G++ E + E K+ KK+ D++ EEE+
Sbjct: 250 GNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEED 297
Score = 34.2 bits (78), Expect = 0.22
Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 12/167 (7%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV 506
E+ A +E V++ + D ++ K K++E+ E + + + DE + +
Sbjct: 165 EEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDY 224
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDK----------DEVGSPETEKSEK 556
+ + + K D++ G + E ++ ++ + D D+ + E ++
Sbjct: 225 FQ-DDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKE 283
Query: 557 KKKKKKD-KEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
KK+ D K EE + D E+ + ++ + K K D E
Sbjct: 284 AVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGV 330
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 34.6 bits (79), Expect = 0.17
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKK--KKKKDK 564
E KE K K K+ + + +EK +++ + KD E+ + + + K K K KKD
Sbjct: 1487 ELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNKFAKTKKDS 1546
Query: 565 E--VEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
E ++E K +EA+KSE+K K+ KK+K E++
Sbjct: 1547 EIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDD 1584
>gnl|CDD|219755 pfam08231, SYF2, SYF2 splicing factor. Proteins in this family are
involved in cell cycle progression and pre-mRNA
splicing.
Length = 157
Score = 33.1 bits (76), Expect = 0.18
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
E EK +KKKKKKK+K++ G + + + ++ K+ P+ E+ EK+K+ +
Sbjct: 18 EESEKWDKKKKKKKNKDDFGFNDYEQDALYRAYKRRLKNL----KPDLEEYEKQKEAVGE 73
Query: 564 KEVEEAKG-------VDNGENVEA--------DKSEKKKKKKKKKKDAEEE 599
K N EA +K ++K+ K +++ ++E
Sbjct: 74 KFYATFYRTADSILYTSNKPTEEAIDRLVQDLEKQQEKRLKFSRRRGFDDE 124
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 34.4 bits (79), Expect = 0.18
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENG--------GADTEVVEKTEKVKAKKHKDKDEVGS 548
+ + E + EKK ++++ E E + A+K++ K
Sbjct: 290 QRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAK----- 344
Query: 549 PETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKK--KDAEEEEEE 602
+K +K++ ++E+ + + ++ + K KKK DA E+
Sbjct: 345 -ARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDT 399
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 34.0 bits (78), Expect = 0.19
Identities = 22/127 (17%), Positives = 52/127 (40%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
+A+ +++ + ++ + + E EA E + + KKK+ E + + +K
Sbjct: 26 QARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFN 85
Query: 536 KAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
+ K + ++ + +KDKE+E + + + E K + + +KK
Sbjct: 86 EQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKR 145
Query: 596 AEEEEEE 602
+ EE
Sbjct: 146 ENNKNEE 152
Score = 29.8 bits (67), Expect = 4.7
Identities = 23/157 (14%), Positives = 60/157 (38%), Gaps = 8/157 (5%)
Query: 446 AEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIE 505
A+ A+K+ + +L + + + ++ E + ++ E
Sbjct: 56 AQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKE 115
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
+E EK+ + E+ ++ + K ++ + E K E +KK ++ E
Sbjct: 116 LELLEKELDELSK--------ELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLE 167
Query: 566 VEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+E K + D K+ +++++ K A ++ +
Sbjct: 168 LEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLK 204
>gnl|CDD|227595 COG5270, COG5270, PUA domain (predicted RNA-binding domain)
[Translation, ribosomal structure and biogenesis].
Length = 202
Score = 33.2 bits (76), Expect = 0.21
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 305 LLTSYKRLV-VKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEM 363
LL K+ + V + G ++ PG++ E+ IE G+EV++++ G V +GIA+
Sbjct: 123 LLEKGKKGRKIDRGAVEPVKNGKNVLPPGVIEAEDSIERGDEVIVVSENGRVVGVGIAKK 182
Query: 364 TTAVMATCDHGVVARIKR 381
+ + + G + ++
Sbjct: 183 SYEELINPERGTGVKPRK 200
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 33.8 bits (77), Expect = 0.24
Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 496 VKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSE 555
K+ ++ EKK KK KE A T+ KT KA K K+
Sbjct: 4 TKKTTKKKTTEEKKPAAKKATTSKET--AKTKKTAKTTSTKAAK-------------KAA 48
Query: 556 KKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K KK K K + V E E+ K E KK KK+ E E
Sbjct: 49 KVKKTKSVKTTTKKVTVKF-EKTESVKKESVAKKTVKKEAVSAEVFE 94
Score = 33.4 bits (76), Expect = 0.27
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 483 VEVEKEETVKVKKVKEDEAEEIEVEKKEKKKK--------KKKDKENGGADTEVVEKTEK 534
E +K K + K+ A++ K+ K K K K T+ V+ T K
Sbjct: 2 AETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTK 61
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
K +K E E+ + KK+ EV EA
Sbjct: 62 -KVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEAS 96
Score = 30.7 bits (69), Expect = 1.9
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 458 VKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKK 517
KK + + AKKA + K+ +A +++ K K KK
Sbjct: 4 TKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKV 63
Query: 518 DKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKK 560
E E +K K K E S E ++ K K
Sbjct: 64 -----TVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFK 101
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 33.4 bits (76), Expect = 0.25
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 2/118 (1%)
Query: 446 AEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIE 505
+ E + K + S D EE + E ++ K+D E+
Sbjct: 123 EDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKAS 182
Query: 506 VEKKEKKKKKKKDKENGGADTEVV--EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKK 561
++ E K+ + E A+T+ V E ++ K E E++++
Sbjct: 183 EQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQEVP 240
Score = 33.0 bits (75), Expect = 0.29
Identities = 20/155 (12%), Positives = 60/155 (38%), Gaps = 3/155 (1%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV 506
E TV +E + + + ++ V+E ++ E+ V K+ ++ +E ++
Sbjct: 74 EPTVPPEEAEPHAEEEGQLAVRKTKQKVEEE-VKEQLQSLLEKIVVSKQEEDGPGKEPQL 132
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSP--ETEKSEKKKKKKKDK 564
++ + + D + V + + + E + + SE++ + K+
Sbjct: 133 DEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEP 192
Query: 565 EVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEE 599
+ + ++V + +++ + K +EE
Sbjct: 193 VEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEE 227
Score = 33.0 bits (75), Expect = 0.34
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 457 GVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKED---EAEEIEVEKKEKK- 512
G+K++ P A+ E + V K + ++VKE E+I V K+E+
Sbjct: 66 GLKEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDG 125
Query: 513 --KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
K+ + D++ + ++ E ++A K ++ E E + ++ K+ ++ E +
Sbjct: 126 PGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQE 185
Query: 571 GVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
D+ E VE + K + ++D +EE+
Sbjct: 186 NEDSKEPVEKAERTKAETDDVTEEDYDEEDN 216
Score = 29.9 bits (67), Expect = 3.1
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 444 AAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE 503
EQ + E V K++ D G P L+ K + E + +++ET++ KV E+ +
Sbjct: 104 EVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSD-DRQETLEAGKVHEETEDS 162
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
VE+ ++ K+ KE K + + + K+ V E K+E ++D
Sbjct: 163 YHVEETASEQYKQDMKE----------KASEQENEDSKEP--VEKAERTKAETDDVTEED 210
Query: 564 KEVEEAKGVDNGENVEADKSEKKKKKKKKK 593
+ E+ D+ E E +++++
Sbjct: 211 YDEEDNPVEDSKAIKEELAKEPVEEQQEVP 240
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 33.8 bits (78), Expect = 0.26
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 27/89 (30%)
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
++E+ K + K + EKKEK+K+K K K K
Sbjct: 373 IDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVK------------------K 414
Query: 539 KHKDKDEVGSPETEKSEKKKKKKKDKEVE 567
+H+D +G K++K E
Sbjct: 415 RHRDTKNIG---------KRRKPSGTSEE 434
Score = 33.4 bits (77), Expect = 0.35
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 16/70 (22%)
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
K K K + +K ++K+K K V+ + K K
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPK----------------VKKRHRDTKNIGK 424
Query: 591 KKKKDAEEEE 600
++K EE
Sbjct: 425 RRKPSGTSEE 434
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 32.4 bits (74), Expect = 0.27
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 515 KKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
D E + E ++TE+ + K + + ++ K K +K+K E K
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTE---SKEKKKREVPKPKTEKEKPKTEPK 144
Score = 31.6 bits (72), Expect = 0.61
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 488 EETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDK 543
EE ++ ++ +E E K + K+KKK + + KTE K K K K
Sbjct: 97 EEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 30.5 bits (69), Expect = 1.5
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 519 KENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENV 578
+E +D E E E+ + E E + K + K+K+ E +
Sbjct: 89 RELSSSDDEEEETEEESTDET----------EQEDPPETKTESKEKKKREVPKPKTEKEK 138
Query: 579 EADKSEKKKKKKKKKK 594
K+E KK K K K
Sbjct: 139 P--KTEPKKPKPSKPK 152
Score = 29.7 bits (67), Expect = 2.5
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 464 DASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKK 516
D ++ + + + E+ E + E K K+ E E K E KK K
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 32.3 bits (74), Expect = 0.28
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 23/109 (21%)
Query: 494 KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEK 553
+K K++ +E +K+E+KK+K + EKT K +AK+ K K
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDE------------EKTAKKRAKRQKKK---------- 94
Query: 554 SEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+KKKKKKK K+ + + + ++ E E+++ ++ K+++ E E+
Sbjct: 95 -QKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 29.2 bits (66), Expect = 2.8
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEV-----EKKEKKKKKKKDKENGGADTEVVEKTEK 534
+E + E E+ +K +E + ++ E K++KKK+KKK K+ + EK
Sbjct: 56 DEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGS 115
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKK 561
+++ D++E G + ++ + +K
Sbjct: 116 KSSEESSDEEEEGEEDKQEEPVEIMEK 142
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional.
Length = 643
Score = 34.0 bits (78), Expect = 0.28
Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 23/152 (15%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
++ A + KR LD +G AL ++++ + + + K K
Sbjct: 8 DELRAALAKRGLDTTGLKAAL---VRRLDDAIAEDAKTASK------------SGTKSSA 52
Query: 512 KKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD-------- 563
+KK++++++ G D V K + K E+ +E+ +KKD
Sbjct: 53 GRKKRRERQDDGDDEPVSPKRIAIDEVKGMTVRELREAASERGLATTGRKKDLLERLCAA 112
Query: 564 KEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
E + G NG + + ++++K++K
Sbjct: 113 LESDVKVGSANGTGEDEKEKGGDEEREKEEKI 144
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 33.6 bits (77), Expect = 0.28
Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 477 AKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVK 536
++EE +E EKEE +E ++ E++E++ K+K+K+ ++++ E
Sbjct: 145 EELEEALEFEKEE-------EEQRRLLLQKEEEEQQMNKRKNKQ------ALLDELE--- 188
Query: 537 AKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKS 583
E+ + + S K + + + + E+ G + S
Sbjct: 189 -TSTLPAAELIAQHKKNSVKLEMQVEKPKPEKPNTFSTGIKMGYQIS 234
>gnl|CDD|220573 pfam10105, DUF2344, Uncharacterized protein conserved in bacteria
(DUF2344). This domain, found in various hypothetical
bacterial proteins and Radical Sam domain proteins, has
no known function.
Length = 186
Score = 32.9 bits (76), Expect = 0.29
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKED--EAEEIEVEKKEKKKKKK 516
+P+L A E + + +E +++ E AEE+ VE+ KK KK+
Sbjct: 100 KAPSLMALIEAAEYRITLPEESPEDLEEAVEAFLAAEELVVERTTKKGKKR 150
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 33.1 bits (76), Expect = 0.30
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 496 VKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSE 555
+DE E + ++E++ KKKK + K KK K KD + + +
Sbjct: 67 ESDDEEEGEKELQREERLKKKKRVKTKAY---------KEPTKKKKKKDPTAAKSPKAAA 117
Query: 556 KKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
+ KKK ++ +D+ + S + K+ ++ E E
Sbjct: 118 PRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREI 162
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 33.9 bits (77), Expect = 0.30
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 487 KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV 546
K T +KED+ E +E + K+ KK E G D E++ EK K+ D+DE
Sbjct: 166 KRGTRITLHLKEDQMEYLE--PRRLKELIKKHSEFIGYDIELM--VEKTTEKEVTDEDE- 220
Query: 547 GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
E ++K + ++ +VEE V+ KKKK KK K+ +E E
Sbjct: 221 -----EDTKKADEDGEEPKVEE---------VKEGDEGKKKKTKKVKEVTKEYE 260
Score = 30.0 bits (67), Expect = 4.9
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 435 GDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVK 494
G + L + + + + K+ + G L +K +EV + ++E+T K
Sbjct: 168 GTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKAD 227
Query: 495 KVKED-EAEEIEVEKKEKKKKKKKDKE 520
+ E+ + EE++ + KKKK KK KE
Sbjct: 228 EDGEEPKVEEVKEGDEGKKKKTKKVKE 254
>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G. This
model describes the vacuolar ATP synthase G subunit in
eukaryotes and includes members from diverse groups
e.g., fungi, plants, parasites etc. V-ATPases are
multi-subunit enzymes composed of two functional
domains: A transmembrane Vo domain and a peripheral
catalytic domain V1. The G subunit is one of the
subunits of the catalytic domain. V-ATPases are
responsible for the acidification of endosomes and
lysosomes, which are part of the central vacuolar system
[Energy metabolism, ATP-proton motive force
interconversion].
Length = 113
Score = 31.7 bits (72), Expect = 0.31
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKK-KKKDKENGGADTEVVE 530
L A+K E+V E K +T ++K+ KE+ +E+E K++++K+ K+ + ++ G + E
Sbjct: 12 LQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEE 71
Query: 531 KTEK 534
K E
Sbjct: 72 KAEA 75
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 32.7 bits (75), Expect = 0.36
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 486 EKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
++EE + + ++++E + + + ++ D + +K+ K K K +K
Sbjct: 130 DEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYK---- 185
Query: 546 VGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
E E+K+++KK K+VE+ +E + KK K KKKK ++
Sbjct: 186 ------ELKERKEREKKLKKVEQR--------LELQRELMKKGKGKKKKIVKD 224
Score = 32.7 bits (75), Expect = 0.42
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
EKE ++ KL + D + K+ + +E KEE + V+ +E+
Sbjct: 74 EKEVLSKEQVKLLKTQDLNYVRTKRQAEAKKIEKLKEELHLTDSGSAGPKHIVFVDDEEE 133
Query: 512 KKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKG 571
+K + E++++ E +K + + +K KKK+K KE++E K
Sbjct: 134 QKSFDPAEYFD-TTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKE 192
Query: 572 VDNGENVEADKSEKKKKKKKKKK 594
+ + E +++ KK K
Sbjct: 193 REKKLKKVEQRLELQRELMKKGK 215
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 33.3 bits (76), Expect = 0.38
Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 15/147 (10%)
Query: 454 ETAGVKKRKLDASGDS--PALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
E GV K+ D + + P L K + E + + E ++ +K +IE+ K E
Sbjct: 627 EVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKS----KIELLKLEV 682
Query: 512 KKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKG 571
K + T V + EK++A + + K ++ K+K ++ + E+ A+
Sbjct: 683 AK---------ASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARE 733
Query: 572 VDNGENVEADKSEKKKKKKKKKKDAEE 598
N + K++ K+ E
Sbjct: 734 TAAESNGSLKNDDDKEEDSKEDGSRVE 760
Score = 32.1 bits (73), Expect = 1.0
Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 11/192 (5%)
Query: 419 EKTPQEWARNVVLPPGGDSVVASL----AAAAEQTVAEKETAGVK-----KRKLDASGDS 469
EK E+ + + P S+ L + + ++EK++ K +K D
Sbjct: 514 EKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDR 573
Query: 470 PALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVV 529
P + K ++ EV ++ +D E++E KKE + + ++ G + V
Sbjct: 574 PEIKEKMEALKA--EVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGV 631
Query: 530 EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
K K A++ + E+ E KK ++ + K +E K+ K
Sbjct: 632 TKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDV 691
Query: 590 KKKKKDAEEEEE 601
+K+K E++
Sbjct: 692 TEKEKIEALEQQ 703
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 33.4 bits (77), Expect = 0.38
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK-----VKAKKHKDKDEVGSPET 551
K E E E ++E + + E G E TE+ + K+ DK E
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 552 EKSEKKKKKK 561
EKK ++
Sbjct: 285 ILKEKKDEEL 294
Score = 29.2 bits (66), Expect = 8.2
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKA 537
+ EE +VE E T + K K+++ E E ++K+D + TE ++K E +K
Sbjct: 234 EREEETDVEIETTSETKGTKQEQEGSTE-EDPSLFSEEKEDPDK----TEDLDKLEILKE 288
Query: 538 KKHKDK 543
KK ++
Sbjct: 289 KKDEEL 294
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 33.1 bits (75), Expect = 0.42
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 441 SLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDE 500
+L AA + EKE + + K GD+P + + E EK + K + V+E+E
Sbjct: 151 ALNAAKFEKNIEKEL--MLRLKSGIYGDTPLNVREHLWNKAATEREKRQDEKERYVEEEE 208
Query: 501 AEEIEVE----KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
+ E+E EK+K KKKD E + +E +E + + + + + E K +
Sbjct: 209 ESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKI 268
Query: 557 KKKKKKDK----------EVEEAKGVDNGENVEA 580
+K+K D E E+ + + V+
Sbjct: 269 RKRKTDDAKKSRKPHIHIEYEQERENEKIPAVQH 302
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 32.8 bits (75), Expect = 0.42
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 6/130 (4%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
+KK EE+ K KK + E K ++ K+K ++ E +
Sbjct: 100 ESKKQAKSPKAMRTFEESKKSKKTVDSMIER----KPKEPGLKRKQRKKAQESATSPESS 155
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
+ E ++ KK + G + ++ ++ + KK KK +
Sbjct: 156 PSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSG--DEKSPKSKAAPKKAGKKMR 213
Query: 593 KKDAEEEEEE 602
K D + +E++
Sbjct: 214 KWDLDGDEDD 223
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 32.3 bits (74), Expect = 0.42
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 442 LAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVE--VEKEETVKVKKVKED 499
+E ++ + KK+++ AS + L ++E+ VE +++E VKVK V+ +
Sbjct: 51 FYILSESSLIIENEIESKKKEIQASQRAYILEEYAKQLEKQVEKKLKEEYGVKVKDVEVE 110
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
E++E + K+ V K E + +K K + V +T K +++++
Sbjct: 111 IDEDLESNNFDIKEVN------------VTLKEESKEKQKSKVEPVVIDTQTSKPKEEEE 158
Query: 560 KKKDKE 565
+ ++ E
Sbjct: 159 ESEEAE 164
Score = 31.5 bits (72), Expect = 0.76
Identities = 21/137 (15%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 469 SPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEV 528
+P L + + E ++ ++ E + +EI+ ++ ++ + + ++
Sbjct: 37 NPVLKLFGKDPDLEFYILSESSLIIENEIESKKKEIQASQRAYILEEYAKQLEKQVEKKL 96
Query: 529 VE----KTEKVKAKKHKDKDEVGSPETEKS--EKKKKKKKDKEVEEAKGVDNGENVEADK 582
E K + V+ + +D + E + K++ K+K K E +D + ++
Sbjct: 97 KEEYGVKVKDVEVEIDEDLESNNFDIKEVNVTLKEESKEKQKSKVEPVVIDTQTSKPKEE 156
Query: 583 SEKKKKKKKKKKDAEEE 599
E+ ++ +K K +E
Sbjct: 157 EEESEEAEKIKNFLADE 173
>gnl|CDD|227548 COG5223, COG5223, Uncharacterized conserved protein [Function
unknown].
Length = 240
Score = 32.7 bits (74), Expect = 0.43
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 495 KVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKS 554
K +E I V+ + +K+ ++ + VV + +++ + ++ + S + K
Sbjct: 122 KFEESSLHTIFVDMRFGQKEFIPEEFFRTTEELVVRRENRLEKDQIENNELEDSVFSGKL 181
Query: 555 EKKKKKKKDKEV-----EEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
K K+K E+ + K E VE D+ + K KKK + +
Sbjct: 182 HSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGKKKVVNGKP 230
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 32.8 bits (75), Expect = 0.45
Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 458 VKKRKLDASGDSPALNAKKAKVEEVVE-VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKK 516
+K+ KL+ N AK + + ++K K K+ +E E EE E+ ++ K+K +
Sbjct: 76 LKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYE 135
Query: 517 KDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGE 576
E + + AK+ K + + E+ S K ++ V + + +
Sbjct: 136 ----------EWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQ 185
Query: 577 NVEADK----SEKKKKKKKKKKDAEEEEEE 602
E K +K++++++K++ ++EEEE
Sbjct: 186 EWELKKLKQQQQKREEERRKQRKKQQEEEE 215
>gnl|CDD|234405 TIGR03936, sam_1_link_chp, radical SAM-linked protein. This model
describes an uncharacterized protein encoded adjacent
to, or as a fusion protein with, an uncharacterized
radical SAM protein.
Length = 209
Score = 32.2 bits (74), Expect = 0.47
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKED--EAEEIEVEKKEKKKKKKKD 518
+P+L A + + + ++ +++ E AEEI VEKK KK KKK D
Sbjct: 100 KAPSLMALIDAADYRITLPLDDEEDLQEAIEAFLAAEEIIVEKKTKKGKKKVD 152
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 31.8 bits (72), Expect = 0.48
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
KED +E E K EK++ ++++E D E +E+ E ++ D++E+ E E+ E
Sbjct: 33 KEDIIKENEDVKDEKQEDDEEEEEE---DEEEIEEPEDIE-----DEEEIVEDEEEEEED 84
Query: 557 KKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++ K++E+ D + + D ++ K KK + ++ E
Sbjct: 85 EEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKNYKKNEKSKKTAE 130
Score = 31.4 bits (71), Expect = 0.83
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 486 EKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
+KE+ +K + +DE +E + E++E+ +++ ++ E+ + E+VE E+ + + + D
Sbjct: 32 DKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDL 91
Query: 546 VGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
K +KK ++ + DN +N+ S+ KK +K KK AE
Sbjct: 92 ----------KDIEKKNINDIFNSTQDDNAQNL---ISKNYKKNEKSKKTAE 130
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 31.6 bits (72), Expect = 0.50
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 472 LNAKKAKVEEVVEVE--KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVV 529
+N K+ +++ + +E KEE +K KK E E + KKK K +E
Sbjct: 43 INDAKSTLDKEINIEEIKEEALKYKKEFESAVESL--------KKKLKFEELDDLKITAE 94
Query: 530 EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
+ + ++ K + ++ + K +E +D+S K+ K
Sbjct: 95 NEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQE---------SSSDESPKEVKL 145
Query: 590 KKKKKDAEEEEEE 602
K K + ++E+
Sbjct: 146 ATKNKTKKHDKEK 158
Score = 31.6 bits (72), Expect = 0.63
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 471 ALNAKKAKVEEVVEVEKEETVK-VKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVV 529
AL KK V ++K+ + + +K EI+ ++ + KK E +
Sbjct: 63 ALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKS-IQDLLQDYKKSLEEDTIPNHLN 121
Query: 530 EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
E+ + + E + + K K KK DKE
Sbjct: 122 EEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKE 157
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 32.9 bits (75), Expect = 0.53
Identities = 29/157 (18%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEET------VKVKKVKEDEAEEIE 505
ET +++ N + E +E EKEE+ ++V V ++
Sbjct: 619 FAETGIQTTNVGESADLLLISNPMEV---EPMESEKEESESDGSFIEVDSVSSTLELQVP 675
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE---VGSPETEKS-EKKKKKK 561
+ + + ++ + + E ++++ + +E VG E EK + K +
Sbjct: 676 SKSQPTDESEENAENKVASIEG--EHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEW 733
Query: 562 KDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
+D +EE + ++ N+ A+++ K +K+++K+ A E
Sbjct: 734 QDISLEELEALEA--NLLAEQNSLKAQKQQQKRIAAE 768
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 32.9 bits (75), Expect = 0.53
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 532 TEKVKAKKHKDKDEV-GSPETEKSEKKKKKKKDKEVEEAKG-VDNGENVEADKSEKKKKK 589
+ + K SP S+K KKKK K G ++ + E D +K KK
Sbjct: 393 SAGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKN 452
Query: 590 KKKKKDAEE 598
+KK +D
Sbjct: 453 QKKGRDKSS 461
Score = 32.1 bits (73), Expect = 0.91
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 507 EKKEKKKKKKKDKENGGA------DTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKK 560
+K KKKK K GG D E K K KK +DK +++ KK+
Sbjct: 417 DKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESV 476
Query: 561 K 561
K
Sbjct: 477 K 477
Score = 29.4 bits (66), Expect = 6.5
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 489 ETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGS 548
+ + + +DE E+ + K+ +KK + +D++ K E VK++ +D
Sbjct: 431 KGGTAESIPDDE-EDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQ----EDNNNI 485
Query: 549 PETEKSEKK 557
P E KK
Sbjct: 486 PPEEWVMKK 494
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 32.4 bits (74), Expect = 0.53
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 530 EKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
+ +K+ K K K + + E E ++K + K E D E+ +K
Sbjct: 125 KAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKEL---------EAEDVDEEDEKD 175
Query: 590 KKKKKDAEEEEEE 602
++++++ EEE+E+
Sbjct: 176 EEEEEEEEEEDED 188
Score = 29.0 bits (65), Expect = 5.5
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 543 KDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+G + + K K K G+ E + D+ +KK K+ +AE+ +EE
Sbjct: 117 YSVMGINKKAGKKLALSKFKRKV-----GLFTEEEEDIDEKLSMLEKKLKELEAEDVDEE 171
>gnl|CDD|224178 COG1258, COG1258, Predicted pseudouridylate synthase [Translation,
ribosomal structure and biogenesis].
Length = 398
Score = 32.7 bits (75), Expect = 0.54
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 154 RLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGA-VFQRPPLISAVKRQ--LRIR 210
+K + K Y + V D K+ L +L G + QR P +R +RIR
Sbjct: 272 EEIKETERHRKVYRALVYSDRPVSD-EKLEEVLGSLEGKTIRQRTPRRVLHRRADLVRIR 330
Query: 211 TIYESKLLEYDVDRHLVVFWISCEAGTYVR 240
+YE L D DRH + I E G Y++
Sbjct: 331 RVYELSLDLID-DRHAELE-IEAEGGLYIK 358
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 32.9 bits (75), Expect = 0.55
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 473 NAKKAKVEEVVE--VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
N KA V +V E + + + D+ E ++E K +KK + ++
Sbjct: 341 NRLKASVNQVFEFEIYLYKIINANP---DKLENKKIEISIKPEKKTINNSQIITTKKINI 397
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
E K H D +T+ KKK ++ + ++ K + E KSEK K
Sbjct: 398 VEESNKNSVHFDTLY----KTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKN 452
Score = 31.7 bits (72), Expect = 1.2
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 8/133 (6%)
Query: 472 LNAKKAKVEE-----VVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADT 526
+NA K+E ++ EK+ + + + +E K K
Sbjct: 361 INANPDKLENKKIEISIKPEKKTINNSQIITTKKINIVEESNKNSVHFDTLYKTKIFYHK 420
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK-DKEVEEAKGVDNGENVEADKSEK 585
+ + + K + K ++ E +KSEK K + +E AK +++E K+
Sbjct: 421 KKINQNNKEQDIKKEELLE--KEFVKKSEKIPKNDELLDNLELAKQKFFNKDIELSKNML 478
Query: 586 KKKKKKKKKDAEE 598
+K K K +++ E
Sbjct: 479 QKFNKFKNEESAE 491
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 32.3 bits (73), Expect = 0.57
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENG-----GADTEVVEKTEK 534
+ VE E+ + +E AE+ V + +D + D E E+ E+
Sbjct: 125 KSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEE 184
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
++ ++ +EVGS + ++ ++ E EEA+G D+GE+V + E+ KK+ +++
Sbjct: 185 SDGREEEEDEEVGSDSYGEGNRELNEE---EEEEAEGSDDGEDVVDYEGERIDKKQGEEE 241
Query: 595 DAEEE 599
+ EEE
Sbjct: 242 EMEEE 246
Score = 30.3 bits (68), Expect = 2.3
Identities = 28/157 (17%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Query: 449 TVAEKETAGVKKRKLDASGDSPALNAKKAKVEE--VVEVEKEETVKVKKVKED-EAEEIE 505
T EK K+D + A+K +V +V E+ + + D + EE E
Sbjct: 121 TKLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEE 180
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
++ +++++D+E G + + ++ + + G + ++ KK+ +E
Sbjct: 181 RLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEE 240
Query: 566 VEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E + V N +E E++ ++ ++ EE +
Sbjct: 241 EEMEEEVINLFEIE---WEEESPSEEVPRNNEESPAK 274
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional.
Length = 1195
Score = 32.9 bits (75), Expect = 0.63
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDK-ENGGADTEVVEKTEKVKAK 538
EE++E+ KV K + E IE E K K N D+ + E +
Sbjct: 1073 EELLEINGLGKAKVSKYGDRLLETIESTINEYYKTDKNSSSSNDSPDSGKRRRDENINPN 1132
Query: 539 KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEAD 581
+D D S K + K K K E ++ D + D
Sbjct: 1133 VAEDDDFTKSTSQSKKKTVKNKNKGVEHGNSRETDRRNQCDDD 1175
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 30.7 bits (70), Expect = 0.67
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
+ K +EA E + ++KEKKKKKKK+ E+
Sbjct: 61 RKGKTAREEAVEAKAKEKEKKKKKKKELED 90
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 32.0 bits (73), Expect = 0.72
Identities = 22/114 (19%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 493 VKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE 552
+ + + + + +E +K++KK ++K + +K E + A +++ + ++ S ++
Sbjct: 139 ISVIVDADKKILEQQKEDKKSLEEKQAA-------LEDKLETLVALQNELETQLNSLNSQ 191
Query: 553 KSEKK------KKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
K+EK K+ E+A + EA +E K++ K A+E+
Sbjct: 192 KAEKNALIAALAAKEASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQA 245
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 32.4 bits (74), Expect = 0.74
Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 20/173 (11%)
Query: 436 DSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKK 495
A+ AA + E K+R+ + ++ ++ +EEV+ K K+K+
Sbjct: 243 VEQAATAAAEVPPAEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQ 302
Query: 496 VKE--DEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK-VKAKKHKDK------DEV 546
V E + E +E+ K KK+ E V K + V A + +
Sbjct: 303 VNEELTTVRQENEELEEEYKIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAH 362
Query: 547 GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEE 599
+P ++ K+K ++KE E + + ++ KK + K ++ E E
Sbjct: 363 RTPLIDEYRSLKEKNRNKEDETQR-----------QLDEIKKLRNKIEELESE 404
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 32.1 bits (73), Expect = 0.75
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
+ V + + + + E E E + K + + + E + +K
Sbjct: 35 ELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKP 94
Query: 536 KAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
K K K K + P+ + K + K K + A
Sbjct: 95 KKPKPKPKPK---PKPKPKVKPQPKPKKPPSKTAA 126
Score = 31.3 bits (71), Expect = 1.1
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 425 WARNVVLPPGGDSVVASLAAAAEQTVAEKETAG---VKKRKLDASGDSPALNAKKAKVEE 481
A V D V L A +A K + + + + P + E
Sbjct: 19 AALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPE 78
Query: 482 VVEVE-KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
+ KE+ KK K+ + + K + K K + + + T
Sbjct: 79 PTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 29.0 bits (65), Expect = 6.3
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 437 SVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEE--VVEVEKEETVKVK 494
++VA+L V + ++ + E E K T
Sbjct: 16 ALVAALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPET 75
Query: 495 KVKEDEAEEIEVEKKEKK--------KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV 546
+ + E K EKK K K K K + + K AK ++
Sbjct: 76 PPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQP 135
Query: 547 GSPETEKS 554
P + S
Sbjct: 136 ARPPSAAS 143
>gnl|CDD|211324 cd01291, PseudoU_synth, Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi). Pseudouridine
synthases contains the RsuA/RluD, TruA, TruB and TruD
families. This group consists of eukaryotic, bacterial
and archeal pseudouridine synthases. Some psi sites such
as psi55,13,38 and 39 in tRNA are highly conserved,
being in the same position in eubacteria, archeabacteria
and eukaryotes. Other psi sites occur in a more
restricted fashion, for example psi2604in 23S RNA made
by E.coli RluF has only been detected in E.coli. Human
dyskerin with the help of guide RNAs makes the hundreds
of psueudouridnes present in rRNA and small nuclear RNAs
(snRNAs). Mutations in human dyskerin cause X-linked
dyskeratosis congenitas. Missense mutation in human PUS1
causes mitochondrial myopathy and sideroblastic anemia
(MLASA).
Length = 87
Score = 29.8 bits (68), Expect = 0.76
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 56/142 (39%)
Query: 107 LDKPANPSSHEVVAWIK-RILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 165
L KP + K + ++ G++G D + +V
Sbjct: 1 LYKPGGDTMEAARQLAKLLGIPPKRVGYAGRKDKRAVTTQLVS---------------NR 45
Query: 166 YVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRH 225
+ + +R + L + +
Sbjct: 46 FT---------------------------------------ITLR-VKPLNLKWPEERKR 65
Query: 226 LVVFWISCEAGTYVRTMCVHLG 247
+V + G+Y + LG
Sbjct: 66 ALVLEFTLPRGSYATMLLRELG 87
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 32.3 bits (74), Expect = 0.80
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 496 VKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHK-----------DK- 543
K D+ EE++ EK+EK+ K++ + E +K E K +K K DK
Sbjct: 545 WKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKY 604
Query: 544 ---DEVGSPETEK--SEKKKKKKKDKEVEEAKGVDNGENVEADKSEK 585
DE G P + E KK++K E K E A +
Sbjct: 605 SAFDETGLPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGKS 651
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 32.3 bits (73), Expect = 0.84
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 437 SVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKV 496
SV + A E A K T + + + + AL K+EE +++ K + KV
Sbjct: 184 SVAGIVGADEEAPPAPKNTLTPLEELYETNVNLFALKHPLEKLEEEIDILKNDG---DKV 240
Query: 497 KEDEAEEIEVEKKEKKKKKKKDKENGGA--DTEVVEKTEKVKAKKHKDKD 544
E+E E++ E +E ++ KK+ E GA D E + E++K +H KD
Sbjct: 241 AEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKD 290
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 31.9 bits (73), Expect = 0.86
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 552 EKSEKKKKKKKDKEVEEAKGVDNGENVEADK------SEKKKKKKKKKKDAE 597
K KKKK++ +++VE A+ + ++ E K K KK A+
Sbjct: 227 LKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 31.9 bits (73), Expect = 0.86
Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 30/161 (18%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKE--ETVKVKKVKEDEAEEIEVE-- 507
KE K KL + L KVE +V+ + E V+ E + + +
Sbjct: 134 VKEEGDEKFYKLS---EEKLLEWLLKKVERLVKYLPKSKEESLVRSALELDIPDDILNLL 190
Query: 508 --------------KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEK 553
K+ K + K K K ++ ++ E EK
Sbjct: 191 RLRYACDLLCSYLPPDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEK 250
Query: 554 SEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
K K++ K K+ +E+KGV K+ KK K KK
Sbjct: 251 KRKSKEEIKKKKPKESKGV---------KALKKVVAKGMKK 282
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 32.0 bits (73), Expect = 0.89
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
V+ K+ KKKKKK K+ E + E E + KK+ +E
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEE 332
Query: 566 VEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
E+ V++ ++++A +++++ +KK+K E+
Sbjct: 333 QEDDDFVEDDDDLQASLAKQRRLAQKKRKKLRPED 367
Score = 32.0 bits (73), Expect = 0.98
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE-----------------VGSP 549
EK +K + KK K + D + + +K ++ +
Sbjct: 177 EKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTDDEA 236
Query: 550 ETEKSEKKKKKKK-----DKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E ++ E KKK K D + E D + E K +K KKKKKKKK ++ +E
Sbjct: 237 EKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDE 294
Score = 30.9 bits (70), Expect = 2.4
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 28/186 (15%)
Query: 431 LPPGGDSVVASL---AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEK 487
LP G ++ AAA + +++ KRK L K AK E ++
Sbjct: 20 LPVPGAKPGSTKESRDAAAYENWKKRQEEAEAKRK------REELREKIAKARE----KR 69
Query: 488 EETVKVKKVK---EDEAEEIEVE---KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHK 541
E K+ +K ED+ ++ + + KK KK++KKK+ E ++++ EK +A ++
Sbjct: 70 ERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAE--RKKALLLDEKEKERAAEYT 127
Query: 542 DKDEVGSPETEKSEKKKKKK------KDKEV-EEAKGVDNGENVEADKSEKKKKKKKKKK 594
+D G K E+ ++ + KD V E+ D ENVE + EK KK + KK
Sbjct: 128 SEDLAGLKVGHKVEEFEEGEDVILTLKDTGVLEDEDEGDELENVELVEKEKDKKNLELKK 187
Query: 595 DAEEEE 600
+ +
Sbjct: 188 KKPDYD 193
Score = 29.0 bits (65), Expect = 8.3
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPET 551
+ K ED A +I E+ E +++ ++ +NG + E +E V++ + + +E +
Sbjct: 360 RKKLRPEDIARQIAEERSEDEEEAAENNDNG---IVIDETSEFVRSLQKEPLEEKPENKD 416
Query: 552 EKSEKKKKKKKDKEVEEAK-GVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E E+ ++D E EE + G + E D E+K+++ K+ + EEE
Sbjct: 417 ESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEE 468
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 32.0 bits (73), Expect = 0.90
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 13/161 (8%)
Query: 437 SVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKV 496
S + A +T E + K S + ++++ +++ E +TV+
Sbjct: 109 GTERSTSGAVPETKDETPASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVET--- 165
Query: 497 KEDEAEEIEVEKKEKK---KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEK 553
AEEIE K + KK+KKD N E ++ E +K K K+ E+ + E
Sbjct: 166 ----AEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEF 221
Query: 554 SEKKKKKKKDKE-VEEAKG--VDNGENVEADKSEKKKKKKK 591
+ KK+ K DK+ ++ AK ++ + ++AD +E KK +
Sbjct: 222 DKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQN 262
>gnl|CDD|153357 cd07673, F-BAR_FCHO2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH domain Only 2
protein. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
The specific function of FCH domain Only 2 (FCHO2) is
still unknown. It contains an N-terminal F-BAR domain
and a C-terminal domain of unknown function named SAFF
which is also present in FCHO1 and endophilin
interacting protein 1. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 269
Score = 31.6 bits (71), Expect = 0.97
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 493 VKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE 552
V+K++E +E++ +E+ K KK KE E V+ + + K K+ + E
Sbjct: 87 VRKLQE-LIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAKCLE 145
Query: 553 KSEKKKKKKKDKEVEEA 569
+ KK+ +E+E+A
Sbjct: 146 QERLKKEGATQREIEKA 162
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 30.8 bits (70), Expect = 0.97
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 501 AEEIEVEKKEKKKKKKKDKENGGADTEVV-----EKTEKVK----AKKHKDKDEVGSPET 551
++ E++K KKKKK+ + G E E T + K KK K+K +
Sbjct: 20 SKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKA 79
Query: 552 EKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+K E +K+K+K++ +A EA+K ++ + +KKK +A+ +EE
Sbjct: 80 KKEEAEKEKEKEERFMKAL-------AEAEK--ERAELEKKKAEAKLMKEE 121
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 31.8 bits (73), Expect = 0.98
Identities = 27/128 (21%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK 534
+ K EE +EE ++ +E E E E + +++K++K++E + + E+
Sbjct: 138 IERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREV----ARLRAQQEE 193
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
+ ++ ++ DE+ + ++ ++K+++K+KE E + E A + + ++K+++ ++
Sbjct: 194 AEDER-EELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQE 252
Query: 595 DAEEEEEE 602
+ EEE E
Sbjct: 253 ERAEEEAE 260
Score = 30.3 bits (69), Expect = 3.1
Identities = 28/133 (21%), Positives = 79/133 (59%), Gaps = 9/133 (6%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK 534
A+ EE KEE + + V +++ EE E ++E+ +++ +++E E +++ ++
Sbjct: 54 ALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDE 113
Query: 535 VKAKKHKDK-----DEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
+A++ ++K +E+ E+ E+K+++K+ + EE K ++ + +K+E+++++
Sbjct: 114 AEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEY----QREKAEREEER 169
Query: 590 KKKKKDAEEEEEE 602
+ ++++ +EE+E
Sbjct: 170 EAERRERKEEKER 182
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 31.9 bits (73), Expect = 1.0
Identities = 14/82 (17%), Positives = 32/82 (39%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
A K+ + +++ + KK + E+ +E++ KK ++ + TE+ E
Sbjct: 454 KALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQETQLKEATELQEFM 513
Query: 533 EKVKAKKHKDKDEVGSPETEKS 554
+ + K+ G E
Sbjct: 514 INNEDLIEEAKELFGIKSIELL 535
Score = 31.2 bits (71), Expect = 2.0
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 17/103 (16%)
Query: 487 KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV 546
K +K++K + ++ KE K +K K + + E++E+ K
Sbjct: 446 KGAKIKIQKALKSAENPLQ-SLKEFKPSNEKKKIDTESTAEMLEEEAK------------ 492
Query: 547 GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
+ E+ ++ + K+ + E ++N + +E K K
Sbjct: 493 --KDDEEVQETQLKEATELQEFM--INNEDLIEEAKELFGIKS 531
>gnl|CDD|237757 PRK14560, PRK14560, putative RNA-binding protein; Provisional.
Length = 160
Score = 31.0 bits (71), Expect = 1.0
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT-TKGEAVALGIAEMTTAVM 368
+R+VV V + GA +M PG++ + DI+ G+ V ++ T G+ +A+G A M M
Sbjct: 77 RRVVVDAGAVKFVSNGADVMAPGIVEADEDIKEGDIVFVVEETHGKPLAVGRALMDGDEM 136
Query: 369 ATCDHGVVAR 378
G +
Sbjct: 137 VEEKKGKAVK 146
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 31.1 bits (71), Expect = 1.0
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGS 548
KV+++K+ E + E E KKK +E +K + K KK K VG
Sbjct: 152 KVERLKKKELDIKEAEAARDKKKSNNAEEEKKK-----KKKKSAKKKKLKKVAAVGM 203
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 32.0 bits (72), Expect = 1.0
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 484 EVEKEETVKVKKVKEDEAEEIEV----EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
E+E + + K+ + IE+ E +EK + K + + D E E+ E ++ K
Sbjct: 984 EIESKLPLD-KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAK 1042
Query: 540 HKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
+ E+G E E+ ++ +K D E AK
Sbjct: 1043 EE---EIGKKEKEREQRIRKTIHDNYKEMAK 1070
Score = 31.6 bits (71), Expect = 1.5
Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 2/147 (1%)
Query: 457 GVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK-KKKK 515
+ + + + K + K K + E EE ++ EK +
Sbjct: 547 ANESISSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFED 606
Query: 516 KKDKENGGADTEVVEKTEKVKAKKHKDKDEVG-SPETEKSEKKKKKKKDKEVEEAKGVDN 574
+D+EN + + V A+ + DEV E E++ +KK++ + E +G
Sbjct: 607 LEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPE 666
Query: 575 GENVEADKSEKKKKKKKKKKDAEEEEE 601
++V+ EK+K +++ K + E E
Sbjct: 667 KKDVDWYTEEKRKIEEQLKINRSEFET 693
Score = 30.9 bits (69), Expect = 2.3
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 484 EVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV-----KAK 538
+ + +K+ E E EE++ KK + K + A + +E E++ K
Sbjct: 546 VANESISSNHEKLMESEFEELK--KKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGN 603
Query: 539 KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
+DE S + E E + + E A VD E ++ E +KK++ + + E
Sbjct: 604 FEDLEDEENSSDNEMEESRGSSVTAENEESADEVD----YETEREENARKKEELRGNFEL 659
Query: 599 EEEE 602
EE
Sbjct: 660 EERG 663
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 29.9 bits (68), Expect = 1.0
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKK-KKKDKENGGADTEVVE 530
L A+K E V E K ++K+ KE+ +EIE + +++ + K+ + E+ G+ E+ +
Sbjct: 10 LQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEK 69
Query: 531 KTEK 534
K EK
Sbjct: 70 KIEK 73
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 31.9 bits (73), Expect = 1.1
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV------EKKEKKKKKKKDKENGGADTEV 528
++ K+ E E + + +VK +E+ EK+KK+K+ K A V
Sbjct: 725 RRGKITVTDEKCPECGLPLLRVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGV 784
Query: 529 VEKT-EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK 564
KT EK+K + ++ + + + K
Sbjct: 785 GAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSAD 821
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED
MODIFIER (SUMO); Provisional.
Length = 490
Score = 31.7 bits (72), Expect = 1.2
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEA-EEIEVEKKEKKKKKKKDKENGGADTEVVEKT---- 532
K +EVV+V +E KV+ + +D + EE+E + + + ++K + G ++V T
Sbjct: 120 KDKEVVDVG-DELGKVEMISDDSSIEEVEAVEMDVDEVEEKAEMGNGLSSDVKIVTKNGN 178
Query: 533 -EKVKAKKHKDKDEVGSPETEKS--EKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKK 589
K D + PET+ E +K + E +K D G +E ++ +
Sbjct: 179 LRVEDTSKMLDSLVLNRPETDVLSVEAYRKLLQSAERRNSKLKDLGFEIELNEKRLSSLR 238
Query: 590 KKKKKDAEEEEE 601
+ + K E EE
Sbjct: 239 QSRPKPKEPVEE 250
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 30.3 bits (69), Expect = 1.2
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 507 EKKEKKKKKKKDKENGGAD---TEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
+K+E+++K++K+KE + V +K + K + E + + + EKKKKKKK+
Sbjct: 31 DKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTAR----KESVAAKAAEKEKKKKKKKE 86
Query: 564 KE 565
+
Sbjct: 87 LK 88
Score = 29.9 bits (68), Expect = 1.3
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 550 ETEKSEKKKKKKKDKEVEE-----------AKGVDNGENVEADKSEKKKKKKKKKK 594
+ E+ E+K++K+K+ E +E E+V A +EK+KKKKKKK+
Sbjct: 31 DKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKE 86
Score = 28.8 bits (65), Expect = 3.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
+ K E+ + +KEKKKKKKK+ +N
Sbjct: 60 RRPKTARKESVAAKAAEKEKKKKKKKELKN 89
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 505 EVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK 564
E+ K+ KK KKK + A VE+ + ++ + +P+ +K++K K+K + +
Sbjct: 210 EITGKKNKKNKKKSESEATAAPASVEQVVEQPKVVTEEPHQQAAPQEKKNKKNKRKSESE 269
Query: 565 EVEEAKGVDNGENVE----ADKSEKKKKKKKKKKDAEEEEEE 602
V A VE A +++KK KK KKK ++E+ EE
Sbjct: 270 NVPAASETPVEPVVETTPPASENQKKNKKDKKKSESEKVVEE 311
Score = 29.3 bits (64), Expect = 7.9
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 1/151 (0%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV 506
+Q AE+E ++ K +A KK K + + EK E K EEI V
Sbjct: 120 KQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEEIVV 179
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEV 566
+K + E E E+V+ K K++ ++E ++ V
Sbjct: 180 KKVANDRSAAPAPEPKTPTNTPAEPAEQVQEITGK-KNKKNKKKSESEATAAPASVEQVV 238
Query: 567 EEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
E+ K V + +A EKK KK K+K ++E
Sbjct: 239 EQPKVVTEEPHQQAAPQEKKNKKNKRKSESE 269
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 31.0 bits (70), Expect = 1.3
Identities = 20/95 (21%), Positives = 48/95 (50%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVE 567
+E +K+ K++E + E+ E + +++ ++ E+ K+K + KEVE
Sbjct: 1 MEEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVE 60
Query: 568 EAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ +D + ++A+ +K+ +K+K + E +E
Sbjct: 61 AQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKE 95
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 31.8 bits (72), Expect = 1.3
Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
+ + +K+ KK + T + + K K +KHK+ +E E++K ++K
Sbjct: 717 KGVPPKPAEKDSLSAPKKQT----SKTASEKSSSKGK-RKHKNDEEADKIESKKQRLEEK 771
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
+ + N E+ KS + K+++
Sbjct: 772 SSSCSPSSSSSHHHSSSNKESRKSSRNKEEE 802
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 31.8 bits (73), Expect = 1.3
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 469 SPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIE--VEKKEKKKKKKKDKE 520
L EE +V + ++ K E+E E+IE +++ E++ + +++
Sbjct: 63 RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEI 116
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 31.5 bits (71), Expect = 1.4
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 502 EEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKK 561
E + + + K A T + V + H+ +E ++ +
Sbjct: 28 GTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQ-------TESDTETAEESR 80
Query: 562 KDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++ E +G +G E+ S ++ A E
Sbjct: 81 HGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPE 121
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 30.7 bits (70), Expect = 1.4
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 495 KVKEDEAEEIEVE-KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGS----- 548
K K+ EE++ E ++ K+KKK K ++G E +++ + KD +GS
Sbjct: 15 KSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKKDP-RIGSKKPIP 73
Query: 549 ---PETEKSEKKKKKKK 562
E K +KKK K K
Sbjct: 74 LGVEEKVKPKKKKPKSK 90
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 31.0 bits (70), Expect = 1.4
Identities = 18/71 (25%), Positives = 25/71 (35%)
Query: 451 AEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKE 510
EKE K G K E +K + K + + +E E +KK+
Sbjct: 133 REKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKK 192
Query: 511 KKKKKKKDKEN 521
K KK KE
Sbjct: 193 YIDKYKKLKEE 203
Score = 29.4 bits (66), Expect = 4.7
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK-DKE 565
EK+ K+ D+E + E E +K+ K P+ + K E
Sbjct: 116 EKEPYYKEANSDRERYQREKE--EYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVE 173
Query: 566 VEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ E E+ K + K KK K++ + E
Sbjct: 174 ETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPE 210
>gnl|CDD|224553 COG1638, DctP, TRAP-type C4-dicarboxylate transport system,
periplasmic component [Carbohydrate transport and
metabolism].
Length = 332
Score = 31.5 bits (72), Expect = 1.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 474 AKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKK------DKENGGADTE 527
AK+A E+ VE+ E ++K+KE E +E + E ++ K K+ G E
Sbjct: 262 AKEAAEEQRKLVEELEDELLEKLKEAGVEVVEPDAAEAFREAAKPVYDEFAKKAGEIGAE 321
Query: 528 VVEKTEKVKAK 538
++E E + K
Sbjct: 322 LIEAIEAARKK 332
>gnl|CDD|226115 COG3587, COG3587, Restriction endonuclease [Defense mechanisms].
Length = 985
Score = 31.7 bits (72), Expect = 1.4
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 25/129 (19%)
Query: 484 EVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK---TEKVKAKKH 540
E+ E +K K++E K KE G E +EK + +K
Sbjct: 564 EINDESFIKQGFAKDEEE-----------LSKLILKERGKVLPETLEKLLFGDLIKDDYL 612
Query: 541 KDKDEVGSPETEKSEKKKKKKKDKEVEE-------AKGVDNGENVEADKSEKKKKKKKKK 593
+ E + E + K KD+ E K G + + E+KK+K K +
Sbjct: 613 DLNEN----EFAEKEPELDKLKDELYEAFEKIKDLIKDRLIGADRIRNAKERKKEKIKIR 668
Query: 594 KDAEEEEEE 602
K+ +E +
Sbjct: 669 KENFKEFKA 677
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 579 EADKSEKKKKKKKKKKDAEEEEEE 602
EADK+ K++ K K+++ A ++EE+
Sbjct: 49 EADKARKQQLKAKQRQAANDDEED 72
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 31.5 bits (72), Expect = 1.5
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
A ++T E+E A + +L L A++ + E + EE K+ +D +
Sbjct: 251 AQPTDRTKTEEELAKEEAERLKK------LEAERLRRMRGEEEDDEEEEDSKESADDLDD 304
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
E E + + G D E E + ++ D D E
Sbjct: 305 EFEPDDDDNF-----GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSD------ 353
Query: 563 DKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEE 599
++E EE + D+ ++ E ++ EK+KKKKK + E
Sbjct: 354 EEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 30.7 bits (70), Expect = 1.6
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 23/137 (16%)
Query: 459 KKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
KK+K D L A+K K+EE+ ED+A EIE ++K K K +
Sbjct: 88 KKKKTDYKQLLKKLEARKKKLEEL--------------DEDKAAEIEEKEKWTKALAKAE 133
Query: 519 KENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENV 578
D ++++K K K +K K K + E ++ +KKK ++ K+ EE N+
Sbjct: 134 GVKVKDDEKLLKKALKRK-EKQKKKSKKEWKERKEKVEKKKAERQKKREE--------NL 184
Query: 579 EADKSEKKKKKKKKKKD 595
+ K +KK KKKKK K
Sbjct: 185 KKRKDDKKNKKKKKAKK 201
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 30.8 bits (70), Expect = 1.7
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 513 KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGV 572
+K KK K G A E+V A K +++ + K++K + EE
Sbjct: 126 RKGKKPK-KGFAGIPADTSKEEVVALPVK-QNKNSEVIPFQRTPKREKARVITKEERAFN 183
Query: 573 DNGENVEADKSEKKKKKKKKKKDAEEE 599
+A + K KK+KKK A+E+
Sbjct: 184 AYRTLRQAKLNAKFVGKKEKKKQAKEK 210
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 31.3 bits (70), Expect = 1.7
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
EE VE EE V+ + V+E+ E +E +E ++ ++ + V E E+ +
Sbjct: 959 AEENVEENVEENVE-ENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEE 1017
Query: 539 KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
++ DE E E++ ++ ++ +E+EE + EN+E + E ++ ++ ++ E
Sbjct: 1018 NVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIE 1077
Query: 599 EEEE 602
E E
Sbjct: 1078 ENIE 1081
Score = 30.9 bits (69), Expect = 2.5
Identities = 34/127 (26%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIE--VEKKEKKKKKKKDKENGGADTEVVEKTEKVK 536
VEE VE EE V+ + V+E+ E +E VE+ ++ ++ D+EN E VE+ ++
Sbjct: 983 VEENVEENVEENVE-ENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEEN 1041
Query: 537 AKKHKDKDEVGSPET-EKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
++ ++ E E E++ ++ ++ +E+EE + ENVE + E ++ ++ ++
Sbjct: 1042 VEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEE 1101
Query: 596 AEEEEEE 602
EE E
Sbjct: 1102 NVEENAE 1108
Score = 29.0 bits (64), Expect = 8.7
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
VEE VE EE V+ + V+E+ E IE E E+ ++ ++ D E VE+ E+
Sbjct: 979 VEENVEENVEENVE-ENVEENVEENIE-ENVEENVEENIEENVEEYDEENVEEVEE---- 1032
Query: 539 KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
++ DE E E++ ++ ++ +E E +N E +E + E ++ ++ +
Sbjct: 1033 NVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENV 1092
Query: 599 EEEE 602
EE E
Sbjct: 1093 EEIE 1096
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 31.0 bits (70), Expect = 1.7
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTE 527
D+ L+ EEV E +V D E E E + + ++G D E
Sbjct: 181 DASTLHEDDELDEEVTSYLNELDDEVTSYFNDG--ENEENDDELEAEVISYLKDGENDNE 238
Query: 528 VVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGEN 577
V EK + + DK + ETE ++ + + +++ EE + D GE
Sbjct: 239 VKEKIRREYREWKGDKAN--TNETEIEDESEDEYEEEAGEEQENEDKGEE 286
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 31.3 bits (71), Expect = 1.9
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
KT + KAKK + K K+++ K E GE K+ KK +K
Sbjct: 736 KTAREKAKK---------GDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARK 786
Query: 591 KKKKDAE 597
KK A+
Sbjct: 787 AKKPSAK 793
Score = 30.1 bits (68), Expect = 3.8
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVE 567
K ++K KK D G K +V K + + D E + K KK
Sbjct: 736 KTAREKAKKGDAGKKGG------KRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDA----- 784
Query: 568 EAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
K + + K K+ KKK AE
Sbjct: 785 -RKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 30.6 bits (69), Expect = 1.9
Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 33/172 (19%)
Query: 432 PPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEE-T 490
G + ++ + V + V + K K + +K +
Sbjct: 99 TEGRERLLTVSHENGKLQVTYVTHSKVAHEAEIRNLGDVKNAEKFEKECRALSRKKSDDE 158
Query: 491 VKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPE 550
+ + K+ E +E +K K+ ++KK +E D +
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDED----------------------- 195
Query: 551 TEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K+ + G + EK++K ++ E + E
Sbjct: 196 ---------KRPGGGGGSSGGQSGLSTKDEPPKEKRQKHHDPERRLEPQSHE 238
>gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting
nuclear protein NIP30. This is a the N-terminal 100
amino acids of a family of proteins conserved from
plants to humans. The full-length protein has putatively
been called NEFA-interacting nuclear protein NIP30,
however no reference could be found to confirm this.
Length = 99
Score = 29.3 bits (66), Expect = 1.9
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 526 TEVVEKTEKVKAKKHKDKDEVGSPETEKSEK-------KKKKKKDKEVEEA-------KG 571
+E+ E ++ + + +D PE E + + K KK +E EE +G
Sbjct: 5 SELDEARKRRQEEVRAPRDPKAEPEEEYDGRSLYERLQENKDKKQEEFEEKFKLKNQFRG 64
Query: 572 VDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+D E D+ E+ ++ +KK+ EE EE
Sbjct: 65 LDEDEVEFLDEVEESRRAAEKKRKREEAEE 94
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 29.1 bits (66), Expect = 2.0
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 525 DTEVVEKTEKVKAKKHKDKDEVGSPETEKSE--------KKKKKKKDKEVEEAKGVDNGE 576
+ E V++ + + D DE+ + E+ E + ++ + KE+ +AK E
Sbjct: 10 NPEAVKEKLRKRGVDVLDVDELLELDEERRELQVELEELQAERNELSKEIGKAK--KKKE 67
Query: 577 NVEADKSEKKK-KKKKKKKDAEEEEEE 602
+ EA +E K+ K + K +AE E E
Sbjct: 68 DAEALIAEVKELKDELKALEAELRELE 94
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 31.1 bits (70), Expect = 2.1
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 24/115 (20%)
Query: 477 AKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVK 536
+ EE E K V++ + K + K+K KE G D E+
Sbjct: 760 LEEEEFEYPRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKEIK------- 812
Query: 537 AKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKK 591
+ V ETE K++++K ++ A + KKKK K
Sbjct: 813 ----IESPSV---ETEGERCTIKQREEKGIDA----------PAILNVKKKKPYK 850
>gnl|CDD|130334 TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric
form. This model describes the smaller, monomeric form
of phenylalanine-4-hydroxylase, as found in a small
number of Gram-negative bacteria. The enzyme
irreversibly converts phenylalanine to tryosine and is
known to be the rate-limiting step in phenylalanine
catabolism in some systems. This family is of biopterin
and metal-dependent hydroxylases is related to a family
of longer, multimeric aromatic amino acid hydroxylases
that have additional N-terminal regulatory sequences.
These include tyrosine 3-monooxygenase,
phenylalanine-4-hydroxylase, and tryptophan
5-monoxygenase [Energy metabolism, Amino acids and
amines].
Length = 248
Score = 30.6 bits (69), Expect = 2.1
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 149 IDRATRLVKSQQGAGKEYV-CVARL---HDKVPDVAKVARALEALTG-AVFQRPPLISA 202
I R +L++ + A +EY+ + +L HD++PD ++ R L+A TG + P LI
Sbjct: 23 ITRQLKLIEGR--ACQEYLDGIEQLGLPHDRIPDFDEINRKLQATTGWRIAAVPGLIPF 79
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 31.3 bits (71), Expect = 2.2
Identities = 36/143 (25%), Positives = 43/143 (30%), Gaps = 33/143 (23%)
Query: 339 DIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVM---DRDTYPRKWGL 395
D VGE VV E LG T V+AT VV R VV R +
Sbjct: 814 DAHVGERVV------EECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867
Query: 396 GPRASMKKKLIAEGKLDKHGK--------------------LNEKTPQEWARNVVLPPGG 435
R S+ L AE K +K K ++ GG
Sbjct: 868 FMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAE----GG 923
Query: 436 DSVVASLAAAAEQTVAEKETAGV 458
D AA T EK + V
Sbjct: 924 DGAALDAAAGRLMTREEKASGSV 946
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 30.9 bits (70), Expect = 2.2
Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 35/161 (21%)
Query: 458 VKKRKLDASGDSPALNAKKAKVEEVV---EVEKEETV-KVKKVKEDEAEEIEVEKKEKKK 513
++ ++ G S + +++ +E+ E+E EE + + +++ E + K
Sbjct: 226 LRPQRPVGKGLSELVQEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFK 285
Query: 514 KK----------------KKDKENGGADTEVVEKTEKVKAKKHKD--KDEVGSPETEKSE 555
KK K E ++++ E+ K+ K + G E ++ E
Sbjct: 286 KKGQKRTTRRVKMRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDE 345
Query: 556 KKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDA 596
++ K++ E ++ K +KK +K+K +
Sbjct: 346 DDEESKEEVEKKQ-------------KVKKKPRKRKVNPVS 373
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 30.4 bits (69), Expect = 2.3
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 502 EEIEVEKKEKKKKKKKDKENGGADTEVVEKT-EKVKAKKHKDKDEVGSPETEKSEKKKKK 560
++++ E +K KK+ G + +E +K A + P K +KKKKK
Sbjct: 210 KQLKEEDPDKYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRAN------PSKVKKKKKKKK 263
Query: 561 KKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
K + + K + + K++K +++++ +K +
Sbjct: 264 KVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
>gnl|CDD|217970 pfam04220, YihI, Der GTPase activator (YihI). YihI activates the
GTPase activity of Der, a 50S ribosomal subunit
stability factor. The stimulation is specific to Der as
YihI does not stimulate the GTPase activity of Era or
ObgE. The interaction of YihI with Der requires only the
C-terminal 78 amino acids of YihI. A yihI deletion
mutant is viable and shows a shorter lag period, but the
same post-lag growth rate as a wild-type strain. yihI is
expressed during the lag period. Overexpression of yihI
inhibits cell growth and biogenesis of the 50S ribosomal
subunit. YihI is an unusual, highly hydrophilic protein
with an uneven distribution of charged residues,
resulting in an N-terminal region with high pI and a
C-terminal region with low pI.
Length = 169
Score = 30.0 bits (68), Expect = 2.3
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 20/108 (18%)
Query: 494 KKVKEDEAEEIEVEKKEKKKKKK-KDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE 552
K K+ E++ E +E+K+KKK K ++G E E ++ A + KD +GS
Sbjct: 12 PKGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDP-RIGS---- 66
Query: 553 KSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
KK VE V+ +K KKKK KK K + E+E
Sbjct: 67 ------KKPVPLIVEFK--------VKPEKQAPKKKKVKKPKLSPEQE 100
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 30.5 bits (69), Expect = 2.3
Identities = 15/108 (13%), Positives = 33/108 (30%)
Query: 491 VKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPE 550
+ K+ +E+E E+ + K + ++ D + + E +
Sbjct: 179 REKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSPAK 238
Query: 551 TEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
KK K+ + +K N + + +KK E
Sbjct: 239 PTSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVRKKAAPES 286
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 29.6 bits (67), Expect = 2.4
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 524 ADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKS 583
+D + ++ +D + E K D E EEA + E+++
Sbjct: 20 SDIGPARDGVDIDDEEDEDPKRYQDGDNEG--LFSDGKYDDEDEEADRI--YESIDERMD 75
Query: 584 EKKKKKKKKKKDAEEEEEE 602
E++KK++++K+ E E+
Sbjct: 76 ERRKKRREQKEKEEIEKYR 94
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 29.5 bits (67), Expect = 2.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 485 VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
V + + ++A E + KEKKKKKKK+ EN
Sbjct: 55 VTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELEN 91
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 30.9 bits (71), Expect = 2.5
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
E ++ EDE EE + + + E +V+EK + + +
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPE------KVLEKFKALAKQY 231
Query: 540 HK-----DKDEVGSPETEKSEKKKKKKKDKEVEEAKGV 572
K +K G KK K ++K EE K +
Sbjct: 232 KKLRKAQEKKVEGR---LAQHKKYAKLREKLKEELKSL 266
>gnl|CDD|214474 smart00022, PLAc, Cytoplasmic phospholipase A2, catalytic subunit.
Cytosolic phospholipases A2 hydrolyse arachidonyl
phospholipids. Family includes phospholipases B
isoforms.
Length = 549
Score = 30.5 bits (69), Expect = 2.7
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 59 SIDTSQ-WPI---LLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPS 114
S DT + WP L+K Y+R V G LP Y P + V+ ++
Sbjct: 402 SADTDEFWPNGSSLVKTYERHVVDQGLTFNLPFPYVPDTQTFVN----LGLSTKPTFFGC 457
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 29.7 bits (67), Expect = 2.8
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKED--EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
+A+ E V+ + + D EAE+ +K K + K+ K +
Sbjct: 75 AEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVV 134
Query: 533 EKVKAKKHKDKDEVGSPETEKS 554
+K +A ++E E +
Sbjct: 135 DKSQASLDYGEEETQQQEAQSG 156
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 30.5 bits (69), Expect = 2.9
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 32/144 (22%)
Query: 488 EETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVG 547
EE V + +E++ EE+E + D+ + E E E+ ++ K E+
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPA---KAEIS 58
Query: 548 SPETE--KSEKKKKKKKDKEVEEA--KGVDNGENVEA--------------------DKS 583
E K KK+KK++ +++ E +D N + D+S
Sbjct: 59 KREKARLKELKKQKKQEIQKILEQQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDQS 118
Query: 584 EKKKKKKKKKKDA-----EEEEEE 602
KK K + + A EEE+EE
Sbjct: 119 ASAKKAKGRGRHASKLTEEEEDEE 142
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 30.3 bits (68), Expect = 3.1
Identities = 14/60 (23%), Positives = 21/60 (35%)
Query: 511 KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
K+ K+ +E +E+ E K + V SPE K K + E K
Sbjct: 23 KEDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGESDK 82
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 30.1 bits (68), Expect = 3.2
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 502 EEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKK 561
+E +E K ++ E + K + + K+ + K++ + E ++KKKKK
Sbjct: 247 QENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQ--QEKKELEQRKKKKK 304
Query: 562 KDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ + + N + + K++ K +K++ E E+E
Sbjct: 305 EMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKEREKE 344
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 30.2 bits (69), Expect = 3.3
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 441 SLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDE 500
+ A A E + ETA K A A A + + +++E + +
Sbjct: 245 AKALAVEAGIVTPETADDILSKAVA-----QALALAAALADKDALDEELKEVLSAQAQAA 299
Query: 501 AEEIEVEKKEKKKKKKKDKENGGA 524
A E E E++E++++++ +E A
Sbjct: 300 AAEEEEEEEEEEEEEEPSEEEAAA 323
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 30.6 bits (70), Expect = 3.5
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKA 537
K++ ++ KEE K + KE+E E++ E E KK + +K+ + + K V+
Sbjct: 160 KIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFD--PKEGPVQI 217
Query: 538 KKHKDKDEVGSPETEKSEKKKKKKK----DKEVEEAK 570
K DK+E+ + E+++ + E++E K
Sbjct: 218 GKKIDKEEITPMKEINEEERRVVVEGYVFKVEIKELK 254
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 30.2 bits (68), Expect = 3.5
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
EE++++ E + VK++ K+ KK+KK+++K+ + E V
Sbjct: 8 EEMLQILAPEIYGPRPVKDEAKPR--KIKRVKKRKKREEKDELDDEVEFVRSF 58
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 30.3 bits (69), Expect = 3.7
Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 14/135 (10%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKED--EAEEIEVEKKEKKKKKKKDKENGGADTEV 528
+ +A V E ++ + + EE+E+ ++ V
Sbjct: 744 SPSAPLKVVLVGSEELEDRLEANEDDIKGLANLEELEILSP------DPEEPPVEVTAVV 797
Query: 529 VEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEAD-KSEKKK 587
+ D E + EK+ +K +KE++ + + E A E +
Sbjct: 798 GGAELFLPLAGLIDLAA----ELARLEKELEKL-EKEIDRIEKKLSNEGFVAKAPEEVVE 852
Query: 588 KKKKKKKDAEEEEEE 602
K+K+K + + + +
Sbjct: 853 KEKEKLAEYQVKLAK 867
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 29.4 bits (66), Expect = 3.7
Identities = 27/98 (27%), Positives = 41/98 (41%)
Query: 505 EVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK 564
E+ K + DK N E VE K +KK K + +KKK+K++
Sbjct: 19 EIRAHVKSTTESVDKVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVP 78
Query: 565 EVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E+ + D+ EN E DK + K + AE E+
Sbjct: 79 ELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
>gnl|CDD|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional.
Length = 317
Score = 30.0 bits (68), Expect = 3.8
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 19 ASADAKNDAAALTTDTADADADDNNATAKDFIIKPQS 55
ASA K + A +A+ N ATA FII P S
Sbjct: 220 ASALGKIERGAHGVPNEEAER--NPATAHMFIINPLS 254
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 30.5 bits (69), Expect = 3.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 547 GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
G E E E+ +++ D+ + N N++ D S KKK K+ K ++EE E
Sbjct: 841 GKME-EYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERE 895
>gnl|CDD|237700 PRK14397, PRK14397, membrane protein; Provisional.
Length = 222
Score = 29.4 bits (66), Expect = 3.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 4 VELSRSEKKKHKKKSASADAKNDAAALTTDTADA 37
L+R E+K +KK A A A T ADA
Sbjct: 181 GRLARGEEKPWQKKHHDAAQGTAAGAAPTANADA 214
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 29.9 bits (67), Expect = 4.2
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 494 KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE--VGSPET 551
K+VKE I+VE K + K+ + + E V+ E++K + K E + +
Sbjct: 20 KEVKEQREMRIKVESSMKIEPKENEFLSKPEYDEHVKTPEQIKELEEKKAYEESLKQLQF 79
Query: 552 EKSEKKKKKKKDKEVEEAKGVDN---GENVEADKSEKKKK 588
E + + + G+DN +N+E K +K +
Sbjct: 80 ELDKYDLVLIQAYKTPTNIGIDNLAQQKNLEFIKVKKDGE 119
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 29.9 bits (68), Expect = 4.2
Identities = 23/117 (19%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 483 VEVEKEETVKVKKVKEDEAE----EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
+ +E ++ + + EAE E +E KE+ K + + + E+ E+ +++
Sbjct: 27 LGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAE-----LERELKERRNELQRL 81
Query: 539 KHK--DKDEVGSPETEKSEKKKKK--KKDKEVEE-AKGVDNGENVEADKSEKKKKKK 590
+ + ++E + E +KK++ KK+KE+ K +D E E ++ +++++
Sbjct: 82 ERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE-ELEELIAEQREE 137
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 29.0 bits (65), Expect = 4.2
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 494 KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPE--- 550
KK + EE++ E +++K++KK+ G+ + K + K +GS +
Sbjct: 16 KKARRKTREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQNQKKDPRIGSKKPIP 75
Query: 551 ---TEKSEKKKKKKKDK 564
TEK K+ K K +K
Sbjct: 76 LGVTEKVTKQHKPKSEK 92
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 30.0 bits (67), Expect = 4.3
Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 7/138 (5%)
Query: 464 DASGDSPALNAKKAKVEEVVEVEKEET----VKVKKVKEDEAEEIEVEKKEKKKKKKKDK 519
+ D + KA + E+++ E VK + ED++++ E++ E
Sbjct: 664 KKTADGKGKKSNKASFDSDDEMDENEIWSALVKSRPDVEDDSDDSELDFAEDDFSDSTSD 723
Query: 520 ENGGADT---EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGE 576
+ D E + ++ + + DE+ + + + E +E+ + E
Sbjct: 724 DEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEE 783
Query: 577 NVEADKSEKKKKKKKKKK 594
+ S K+ KKK++K
Sbjct: 784 EENKEVSAKRAKKKQRKN 801
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 30.0 bits (67), Expect = 4.3
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 487 KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV 546
KE+ ++KK+++ E E K K K + +N +E A K K +
Sbjct: 236 KEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAE----IEAEALASATAVKKKAKE 291
Query: 547 GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEAD 581
+ K EKK K K+ + D E+++ D
Sbjct: 292 VMKKALKMEKKAIKNAAKDADYFGDADKAEHIDED 326
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 29.6 bits (66), Expect = 4.4
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 552 EKSEKKKKKKKDKEVEEAKGVDNGENVEA--DKSEKKKKKKKKKKDAEEEEEE 602
E+ +K++++D++VEE + V+ E VE D E +K +K+ DAE +E E
Sbjct: 101 EERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENE 153
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 29.9 bits (67), Expect = 4.4
Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 25/163 (15%)
Query: 451 AEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKE 510
+ T KR+ A+ + A K K E EV +EE K K A+ K
Sbjct: 51 NDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAK-----AKA 105
Query: 511 KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDK-----------DEVGSPETEKSEKKKK 559
K+K + E + A K K E + E E+++K+K
Sbjct: 106 AALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKA 165
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K K +AK A K+K + + E EEE
Sbjct: 166 KAKAAAAAKAK---------AAALAKQKAAEAGEGTEEVTEEE 199
Score = 29.9 bits (67), Expect = 4.5
Identities = 40/161 (24%), Positives = 56/161 (34%), Gaps = 22/161 (13%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
E+ E++ A K A + AL +K + E V E+EET K K + A
Sbjct: 113 REGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAA 172
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK---------------KHKDKDEVG 547
+ K K+K E G TE V + EK KAK K K G
Sbjct: 173 ---AKAKAAALAKQKAAE-AGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNG 228
Query: 548 SPETEKSEKKKK---KKKDKEVEEAKGVDNGENVEADKSEK 585
E ++ K K K AK E + ++
Sbjct: 229 DSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQE 269
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 29.8 bits (67), Expect = 4.6
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 528 VVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKK 587
VV + K +K PE + +E K K + +E +N ++ +K E+
Sbjct: 21 VVSCSTTSSNSKQPEK----KPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENP 76
Query: 588 KKKK--KKKDAEEEEEE 602
KK D + +EE
Sbjct: 77 SSTNPEKKPDPSKNKEE 93
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 29.9 bits (68), Expect = 4.6
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 493 VKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE 552
+K ++E+ V +K KK+ G D V+K ++ ++ K E+
Sbjct: 4 LKLIRENPDA---VREKLKKR---------GGDALDVDKLLELDEERRKLLRELEE---- 47
Query: 553 KSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ ++ + KE+ A GE+ + + K+ K+K K+ E +E
Sbjct: 48 --LQAERNELSKEIGRAL--KRGEDDAEELIAEVKELKEKLKELEAALDE 93
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 29.3 bits (65), Expect = 4.7
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 485 VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHK--D 542
+ +E+ K ++ +E+ E +E E++E+K +++D+E + E E+ +H+ +
Sbjct: 123 IRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIE 182
Query: 543 KDEVGSPETEKSEKKKKK 560
+DE ETE + K +K
Sbjct: 183 QDE---SETESDDDKTEK 197
Score = 28.9 bits (64), Expect = 6.2
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 506 VEKKEKKKKKK---KDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
V+K + KKKK + ++ A E E E+++ ++ ++K + E E E+++++++
Sbjct: 110 VKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKID----EREDQEEQERERE 165
Query: 563 DKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
++ +EE E +E D+SE + K +K
Sbjct: 166 EQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 29.8 bits (67), Expect = 4.8
Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK 534
KAK + + K+ K K D+ +E E E +++ K ++ +++ + E +E
Sbjct: 144 TKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Query: 535 VK------AKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKK 588
+++ +P +E + + D+ E + + E KK
Sbjct: 204 YSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKP 263
Query: 589 KKKKKKDA 596
K+KK
Sbjct: 264 KEKKTSST 271
Score = 29.4 bits (66), Expect = 5.6
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKK 557
E +A++ + +KK KK KKK+ KE+ D E ++E + +D+ E E S+ +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSE 202
Query: 558 KKKKKDKEV-----EEAKGVDNGENVEADKSEK 585
+ D + EE N D SE
Sbjct: 203 DYSQYDGMLVDSSDEEEGEEAPSINYNEDTSES 235
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 29.5 bits (66), Expect = 4.9
Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
A +K+ ++ V K+ + ++ ++ E +++ ++ + ++K K+K
Sbjct: 217 ATRQRKSGGVKITIVGKDPEHEKREREKKEEQKLRARRRRQNREKMKNKPPNRPGHGSGS 276
Query: 531 KTEKVKAK--KHKDKDEVGSPETEKSEKKKKKK 561
+ KA +D+DE ET K+++ KK+
Sbjct: 277 DSNVAKAATTYSEDEDEGSDCETRKAKEVKKEG 309
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 29.8 bits (68), Expect = 5.0
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 27/111 (24%)
Query: 472 LNAKKAKVEEVVEV--EKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVV 529
L K + +E++E KE K+ + E E + +++EK+ +KK K++ +
Sbjct: 174 LPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQ-----------M 222
Query: 530 EKT-------EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEV---EEAK 570
EK+ E++KA + E+G + +K E ++ ++K +++ +EAK
Sbjct: 223 EKSQREYYLREQLKAI----QKELGEDDDDKDEVEELREKIEKLKLPKEAK 269
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 29.2 bits (66), Expect = 5.0
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 558 KKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ +++++E + + + +SE+ + K+K K+ +EE+EE
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
>gnl|CDD|237754 PRK14554, PRK14554, putative pseudouridylate synthase; Provisional.
Length = 422
Score = 29.5 bits (67), Expect = 5.0
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 178 DVAKVARALEALTGA-VFQRPP--LISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCE 234
++ + L+ L+GA + QR P + +R+R +Y+ D + I CE
Sbjct: 323 SEEELEKLLDELSGATIEQRTPRRVKHRRADLVRVRKVYDISGELIDDKHFELR--IKCE 380
Query: 235 AGTYV 239
G Y+
Sbjct: 381 GGLYI 385
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 29.7 bits (66), Expect = 5.1
Identities = 19/98 (19%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIE-------VEKKEKKKKKKKDKENGGADTEVVEKT 532
+EV E +KE+ + + E EE++ E+KE+ + ++++ + + + +
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNEL 346
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
EK +K + + +P +K + + KE+E +
Sbjct: 347 EKGIEEKRRQMESATNPILQKRFESQLNVLLKELELKR 384
Score = 28.9 bits (64), Expect = 9.8
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEK 534
KA+ VV +++E + ++V E + E E + KE GA+ E E
Sbjct: 217 MKAESVSVVLKDEKELARQERVS--SWENFKEEPGEPLSRPALKKEKQGAEEEGEEGMS- 273
Query: 535 VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
++ +VG+ E E E + K+ ++ E + E V++D+ ++ ++K++
Sbjct: 274 ------EEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDD 327
Query: 595 DAEEEEEE 602
+ EE E
Sbjct: 328 ENEENERH 335
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 28.0 bits (62), Expect = 5.2
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 529 VEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKK 588
V+ ++ AK K+K EV E+ E K + E G G++ ++ E +
Sbjct: 5 VDAAAELSAKDLKEKKEV----VEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDED 60
Query: 589 KKKKKKDAEEEEEE 602
++++ + EEEE E
Sbjct: 61 DEEEEGEGEEEEGE 74
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 28.6 bits (65), Expect = 5.3
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 499 DEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
D+ E EK EKK +K K K + K
Sbjct: 64 DKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 28.3 bits (64), Expect = 6.7
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 26/91 (28%)
Query: 511 KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
+KKK K E E+ + E+ K K + + +K E K +K +K
Sbjct: 32 AQKKKGKKGE-----LEITDLNEEYKDLKESLEAAL----LDKKELKAWEKAEK------ 76
Query: 571 GVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
K+EK K K +KKK +EE +
Sbjct: 77 -----------KAEKAKAKAEKKKAKKEEPK 96
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.0 bits (67), Expect = 5.3
Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 26/170 (15%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV 506
Q E E LD D L+ K+ V + ++E + + ++ EE +
Sbjct: 3978 SQPPPENED-------LDLPEDL-KLDEKEGDVSKDSDLEDMDM----EAADENKEEADA 4025
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPE--------TEKSEKKK 558
EK E + + +EN D ++ + A+ + +E G E TE K
Sbjct: 4026 EKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSD 4085
Query: 559 KKKKDKEVEEAKGVDNGENVEAD------KSEKKKKKKKKKKDAEEEEEE 602
++ + EV E + +DN ++A +++++ K + EE EE
Sbjct: 4086 EELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEE 4135
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 29.0 bits (65), Expect = 5.4
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 474 AKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTE 533
AK +EE E E + K +ED E E+EK+E + ++ E + +
Sbjct: 8 AKHENMEEDCCKENENKEEDKGKEEDLEFE-EIEKEEIIEDSEESNEVKIEELKDENNKL 66
Query: 534 KVKAKKHKD-----KDEVGSPETEKSEKKKKKKKDKE 565
K + KK ++ KD + E +K+ K+KE
Sbjct: 67 KEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKE 103
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 29.8 bits (67), Expect = 5.4
Identities = 38/216 (17%), Positives = 85/216 (39%), Gaps = 30/216 (13%)
Query: 402 KKKLIAEGKLDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKR 461
K+ IA + ++ KL E + + V + A E VA + +R
Sbjct: 232 KETEIAIAEANRDAKLVE--LEVEQQPAGKTAEQTREVKIILAETEAEVAAWK--AETRR 287
Query: 462 KLDASGDSPALNAKKAKVEEVVEVEKEET---VKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
+ A++A++ +++E+ +V+ K EA E+ V E++K+ + +
Sbjct: 288 E-----------AEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELE 336
Query: 519 KENGGADTEVVEKTEKVKAKKHKDKDEV-------GSPETEKSEKKKKKKKDKEVE---- 567
+ ++ + +AK + E ++E+ ++ ++ V
Sbjct: 337 PQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEA 396
Query: 568 -EAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E + V+ EA K+E + + + K +AE E+
Sbjct: 397 AEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREK 432
>gnl|CDD|203820 pfam07956, DUF1690, Protein of Unknown function (DUF1690). Family
of uncharacterized fungal proteins.
Length = 142
Score = 28.6 bits (64), Expect = 5.5
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 485 VEKEETVKVKKVKEDEAEEIEVEKKEK-KKKKKKDKENGGADTEVVEKTEKVKAKKHKDK 543
++K+ ++ +++ + ++ E KD ENG + + EK E + K +
Sbjct: 36 IQKKVAAELSQLEVETLKKFEDTLNSSLLSDDSKDNENGLSSNLLNEKIESLTEKLEEFS 95
Query: 544 DEVGSPETEKSEKKKKKKKDKEVEEAKG 571
K E+K+K KK KEVE+A+
Sbjct: 96 ---------KLEEKEKSKKLKEVEDARS 114
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 29.7 bits (67), Expect = 5.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 489 ETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
E K+K KED E I K+ KK+ +K+ E A + K + +
Sbjct: 62 EVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108
>gnl|CDD|233315 TIGR01213, pseudo_Pus10arc, tRNA pseudouridine(54/55) synthase.
Members of this family show twilight-zone similarity to
several predicted RNA pseudouridine synthases. All
trusted members of this family are archaeal. Several
eukaryotic homologs lack N-terminal homology including
two CXXC motifs [Hypothetical proteins, Conserved].
Length = 388
Score = 29.3 bits (66), Expect = 5.8
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 164 KEYVCVARLHDKVPDVAKVARALEALTGAV-FQRPPLISAVKRQ--LRIRTIYESKLLEY 220
K Y + + V D + + L GA +QR PL +R +R R +Y+ L
Sbjct: 277 KVYRALVEVDGPVSDE-DLEELCKELEGATIYQRTPLRVLHRRADLVRERRVYQVDLSG- 334
Query: 221 DVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVR---SGILGENDNMVTMH 277
+D + I E G Y++ L+ G GG R R S +LG +
Sbjct: 335 -LDGNHAELIIEAEGGLYIKE------LVSGDGG------RTRPSVSEVLGVEAVCKEL- 380
Query: 278 DVMD 281
DV+
Sbjct: 381 DVLK 384
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 28.7 bits (65), Expect = 5.8
Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEK--TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKE 565
KKEK+K++K+ ++ + +++ E K +D+ E + +++ + + K
Sbjct: 21 KKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDR--------ELNRQRQAEAEQKA 72
Query: 566 VE 567
+
Sbjct: 73 IV 74
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.5 bits (66), Expect = 5.8
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 494 KKVKEDEAEEIEVEKK--EKKKKKKKDKENGG-----ADTEVVEKTEKVKAKKHKDKDEV 546
K++K + + EK+ E+KK+KK+++E A E E +K K + E+
Sbjct: 483 KRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEI 542
Query: 547 GSPETE----KSEKKKKKKKDKEVEEAK 570
E + + E + +K+ +E+ + +
Sbjct: 543 KKLEHDLKLKEEECRMLEKEAQELRKYQ 570
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 29.3 bits (66), Expect = 6.2
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 513 KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGV 572
K+ K G + +EK + ++ K E+ + +++E K+ K K +
Sbjct: 13 LVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK----GQKK 68
Query: 573 DNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
D E ++ + E K++ + + E E
Sbjct: 69 DKIEEIKKELKELKEELTELSAALKALEAE 98
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 29.1 bits (65), Expect = 6.2
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 449 TVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEK 508
T+ E+E K++ L+ A K+ ++ V E K+E K+ EA +V+
Sbjct: 49 TIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVD- 107
Query: 509 KEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEE 568
D EN + E K ++K K +D++E E EK+E +K + +E
Sbjct: 108 --------TDDENEEEEYEAW-KLRELKRIK-RDREEREEMEREKAEIEKMRNMTEEERR 157
Query: 569 AKGVDNGENVEADKSEKKKK 588
A+ N + + K K
Sbjct: 158 AELRKNPKVSTNKAKKGKYK 177
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 29.2 bits (66), Expect = 6.4
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHK----DKDEVGSPE--- 550
D +E E ++ KK K+ D+E D E + E+ +A+K K + +P
Sbjct: 130 SDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTRILTPADFA 189
Query: 551 ------TEK-SEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDA 596
EK +K K + ++A + E V+AD E KKKK+ K+
Sbjct: 190 KIQELRLEKGVDKALGGKLKRRDKDAPERHSDELVDADDIEGPAKKKKQTKEE 242
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 29.2 bits (65), Expect = 6.7
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 9/160 (5%)
Query: 429 VVLPPGGDSVVASLAAA--AEQTVAEKETAGVKKRKL--DASGDSPALNAKKAKVEEVVE 484
++L P G +L + E+E A + + AS P + + ++V E
Sbjct: 272 IILAPKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAE 331
Query: 485 VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKD 544
K E +V E+ ++ + ++ + E H+
Sbjct: 332 AVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDA 391
Query: 545 EV-----GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVE 579
E P SE + + + + A D + E
Sbjct: 392 EAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 29.3 bits (65), Expect = 6.8
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 487 KEETVKVKKVKEDEAEE-IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
K+ +++ V E+ E E E K++ ++++ + G + K E K + D
Sbjct: 16 KQRQIQINLVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDR 75
Query: 546 VGSPE--TEKSEKKKKKKKDKEVEEAKGVDNGENVEADKS 583
E + S K ++ DK + G G +ADK
Sbjct: 76 RTHTEVGSGSSAKGSGERADKHADGGDGKTRGGGGDADKG 115
>gnl|CDD|177446 PHA02663, PHA02663, hypothetical protein; Provisional.
Length = 172
Score = 28.4 bits (63), Expect = 6.9
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 93 KRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGH 133
R L+D++R + D+ ++ ++ AW++ + RV +T
Sbjct: 105 GRQLIDFMRLVHVLFDRMPPTANEDLAAWLQTVARVHRTRR 145
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 29.0 bits (66), Expect = 6.9
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 22/83 (26%)
Query: 512 KKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKG 571
++KK K + EV E+ K K + K + + K+ K +KKK+K+
Sbjct: 30 AQRKKSQK----GELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQ------ 79
Query: 572 VDNGENVEADKSEKKKKKKKKKK 594
E K K K K
Sbjct: 80 ------------EAKAAKAKSKP 90
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 29.3 bits (65), Expect = 7.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
E+ EK+E +KK K K+ G A +VVE+T V
Sbjct: 581 ELNPEKEEDEKKPKVGKKTGKAKVKVVEQTPTV 613
>gnl|CDD|153332 cd07648, F-BAR_FCHO, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization. Proteins in
this group have been named FCH domain Only (FCHO)
proteins. Vertebrates have two members, FCHO1 and FCHO2.
These proteins contain an F-BAR domain and a C-terminal
domain of unknown function named SAFF which is also
present in endophilin interacting protein 1. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 261
Score = 28.8 bits (65), Expect = 7.7
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 510 EKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEA 569
E+ KK KK KE E V+ + A K K+ + E E+ ++
Sbjct: 96 EQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLEL-ERLRR---------- 144
Query: 570 KGVDNGENVEADKSEKKKKK 589
+N E +K+E K KK
Sbjct: 145 ---ENASPKEIEKAEAKLKK 161
>gnl|CDD|179867 PRK04598, tatA, twin arginine translocase protein A; Provisional.
Length = 81
Score = 27.1 bits (60), Expect = 8.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 486 EKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKE 520
E+E KK + E + +E K E +KKKDKE
Sbjct: 45 EEESAKANKKDADFEPKNLEQAKTEAAAEKKKDKE 79
>gnl|CDD|224234 COG1315, COG1315, Uncharacterized conserved protein [Function
unknown].
Length = 543
Score = 29.0 bits (65), Expect = 8.1
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 523 GADTEVVEKTEKVKAKKHKDKDEVG--SPETEKSEKKKKKKKDKEVEEAKGVDNG--ENV 578
G D E+VE+ +++ + ++ + + K K + K + K N
Sbjct: 403 GMDPEIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNT 462
Query: 579 EADKSEKKKKKKKKKKDAEEEEEE 602
+ +K K + + +EE E
Sbjct: 463 KITLRNSIEKIKAELEGLQEELEV 486
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 28.5 bits (64), Expect = 8.3
Identities = 20/128 (15%), Positives = 54/128 (42%), Gaps = 26/128 (20%)
Query: 498 EDEAEEIEVEKK-EKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
EDE + ++ + E+ ++ K K+ E +K+ + A D+D+ E ++
Sbjct: 51 EDELRKRDLRAELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKR--- 107
Query: 557 KKKKKKDKEVEEAKGVDNGENVEAD----------------------KSEKKKKKKKKKK 594
K+ ++ + + + ++ +D K E+ ++K+++++
Sbjct: 108 KRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEE 167
Query: 595 DAEEEEEE 602
+ EEE+
Sbjct: 168 EKAAEEEK 175
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 28.6 bits (64), Expect = 8.3
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEV 506
+QT +E G++K + L+++ A++E + + + +K+ KE E +EI
Sbjct: 104 DQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEIAR 163
Query: 507 EKKEKKKKKK 516
K E K K+
Sbjct: 164 LKSEASKIKQ 173
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 29.0 bits (65), Expect = 8.4
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 17/147 (11%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK----KKKKKKDKENGGADTEV 528
+ K +VE + + +++ E +EV+ + K D+E D V
Sbjct: 236 EEGERKGVVLVEFSGGKLWRFEELFVPLFERLEVDVLNGEDLEDELLKLDREEDAKDEPV 295
Query: 529 VE---------KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEE----AKGVDNG 575
V E++K + + + E E+ ++ E E +D
Sbjct: 296 VRLTIEGETDILDERLKERILALYERIERLELLLEERATDLAEEPESSELEELLSELDVE 355
Query: 576 ENVEADKSEKKKKKKKKKKDAEEEEEE 602
E E +++ ++ +++ E EE
Sbjct: 356 EAFEELLADEVLLDRESEEELEAALEE 382
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 27.4 bits (61), Expect = 8.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 465 ASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKK 512
+ L ++ + EE EVE+++ V+ + KE EE EVE++E K
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDK 77
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.3 bits (66), Expect = 8.5
Identities = 28/138 (20%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 471 ALNAKKAKV--EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKK---DKENGGAD 525
ALN +A++ + E++ E + ++V EA E+E+K + +K +KE
Sbjct: 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
Query: 526 TEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGE--NVEADKS 583
+ ++ E++K+ + + ++ G E + E ++ + +++E G E +EA
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
Query: 584 EKKKKKKKKKKDAEEEEE 601
E ++K ++ + E++ +
Sbjct: 900 ELERKIEELEAQIEKKRK 917
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 28.2 bits (63), Expect = 8.6
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 498 EDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKK 557
E +AE KE+K+ K K++ + + K ++A E + +E +
Sbjct: 96 EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEA------------EKKVNEAR 143
Query: 558 KKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
+ +K+ EA V E A++ E ++ ++ E E
Sbjct: 144 AEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 28.7 bits (64), Expect = 9.0
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
E++K K + + ++ +T K K +K++ E+++ + E ++A+ S+KKKK KK+
Sbjct: 21 EELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQF----EQLKAELSKKKKKFKKE 76
Query: 593 KKD 595
K D
Sbjct: 77 KVD 79
>gnl|CDD|224289 COG1370, COG1370, tRNA modification protein, contains pre-PUA and
PUA domains [Translation, ribosomal structure and
biogenesis].
Length = 155
Score = 28.1 bits (63), Expect = 9.1
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMAT 370
R+VV D + G + ++ + +I G+EV+++ E +A+G A ++ A M
Sbjct: 82 RVVVSDEAEEFVRKGKSVFAKFVIDVDEEIRAGDEVLVVNEDDELLAVGRALLSGAEMRE 141
Query: 371 CDHGVVARIKR 381
+ G+ +++
Sbjct: 142 FERGMAVKVRE 152
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 28.9 bits (65), Expect = 9.2
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 469 SPALNAKKAKVEEVVEVEKEETVKV---KKVKEDEAEEIEVEKKEKKKKKKKDKENGGAD 525
SP + K++E+ +KEE V+ KK+ E E++E E + K + K +E
Sbjct: 83 SPGEQGLQRKLKELEREQKEEEVREKHNKKIIEKFGEDLE-EVYKFMKGEAKVEEEEEKQ 141
Query: 526 TEVVEKTEK--VKAKKHKDKD 544
E++EK K +K K ++K
Sbjct: 142 MEILEKALKSYLKIVKEENKS 162
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 28.8 bits (65), Expect = 9.2
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 455 TAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKV----KEDEAEEIEVEKKE 510
AG K ++ D P L + ++EE ++ +EE K+KK+ + ++ EK+E
Sbjct: 316 PAGTKTE-IEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKRE 374
Query: 511 KKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
+ +K + KE + E+ E+++ + + K+E+ E+ SE K K
Sbjct: 375 QLEKLLETKEK------LSEELEELEEELKELKEEL---ESLYSEGKISVNK 417
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 27.0 bits (60), Expect = 9.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEK 556
+KKKKKKK K + ++ E+ + + K+ + EK E+
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQ 66
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 28.8 bits (65), Expect = 9.3
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
E+ VEV + +V+ K+ + + K+ KK + A +V EKT+K +
Sbjct: 248 EKTVEVPLKTQREVRTGKKIVRYYLNIGGKKIYLKKPPKEF---AKYDVEEKTKKFGLWR 304
Query: 540 HKDKDEVGSPET-EKSEKKKKKKKDKEVEEAK 570
E+ E EK +K K++ +E+AK
Sbjct: 305 WSLPIEIVKETYYEVKEKVEKVTKEEAIEKAK 336
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 28.9 bits (65), Expect = 9.6
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 29/144 (20%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIE-------------VEKKEKKKKK--- 515
L A+ ++EE +E E+ K +K + D + E+E + E KK+
Sbjct: 44 LEARIRELEEELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAE 103
Query: 516 ----KKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKK-KKDK-----E 565
+KD E E T + KKH+D S + E+ +K+K K +K+K E
Sbjct: 104 LAKLRKDLEEANLQHEEALATLR---KKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAE 160
Query: 566 VEEAKGVDNGENVEADKSEKKKKK 589
V++ + +EKK K+
Sbjct: 161 VDDLLAQLDQIAKAKLNAEKKAKQ 184
>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein. The
low-temperature viability protein LTV1 is involved in
ribosome biogenesis 40S subunit production.
Length = 426
Score = 28.8 bits (64), Expect = 9.9
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 25/142 (17%)
Query: 486 EKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD----------KENGGADTEVVE----K 531
E E +++V + E + ++ K K K + TE + +
Sbjct: 276 ELEGSIEVDSNRLQEVLNDYYKTEKAKSKVKLGAMTPFSDQSMSSSALDRTEKLTTLDDR 335
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKK-------KKKDKEVE----EAKGVDNGENVEA 580
EK + + DE+ + + KK K+ E E G +
Sbjct: 336 FEKAEEEYSNLYDELELIKQIHLSSQTGIPLNVLAKKTAKQFERMLDEFLGSYLPKVQGR 395
Query: 581 DKSEKKKKKKKKKKDAEEEEEE 602
K++K++ K+K+K EE ++E
Sbjct: 396 KKAKKREDKRKRKSALEELDKE 417
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 28.5 bits (63), Expect = 9.9
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 437 SVVASLAAAAEQTVAEKETAGVKKRKLD-----------ASGDSPALNAKKAKVEEVVE- 484
+L A T+ E ++ +L + G S + A K K E+++
Sbjct: 146 PTTMTLPIAEHPTITENQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSK 205
Query: 485 ----VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
+++ +T + + +E E EE+E E K+++ + D
Sbjct: 206 LQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 28.0 bits (63), Expect = 9.9
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 538 KKHKDKDEVGSPETEKSEKK---KKKKKDKE----VEEAKGVDNGENVEADKSEKKKKKK 590
KK K V T + + K+ KD E +E D E+ A K +KK++
Sbjct: 93 KKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEVKPNDDPKEDPFAKKRREKKERV 152
Query: 591 KKKK 594
K +
Sbjct: 153 AKNE 156
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 28.5 bits (64), Expect = 10.0
Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 492 KVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPET 551
+ K+ E E + + K+E ++ K+K E +E+ EK +++ AK + +++
Sbjct: 4 MLDKLDELE-LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELRE 62
Query: 552 EKSE--------KKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
E+ E K+K+ + + +++E + + ++ + K + E E+
Sbjct: 63 ERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEK 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.129 0.360
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,887,166
Number of extensions: 3194100
Number of successful extensions: 12654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8160
Number of HSP's successfully gapped: 1249
Length of query: 602
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 500
Effective length of database: 6,413,494
Effective search space: 3206747000
Effective search space used: 3206747000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (27.5 bits)