RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007467
(602 letters)
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_A
Length = 400
Score = 573 bits (1479), Expect = 0.0
Identities = 275/384 (71%), Positives = 331/384 (86%)
Query: 47 KDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIIN 106
+DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI G+IN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 107 LDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 166
LDKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVCIDRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 167 VCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHL 226
VC+ RLHD + D + R+LE LTGA+FQRPPLISAVKRQLR+RTIYES L+E+D R+L
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 227 VVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLY 286
VFW SCEAGTY+RT+CVHLG++LGVGGHMQELRRVRSG L ENDNMVT+HDVMDAQW+Y
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 287 DNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV 346
DN RDE+YLR +I PLE LL YKR+VVKD+ VNA+CYGAKLMIPGLLR+E IE+ +E+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 347 VLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLI 406
VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD YPR+WGLGP A KK++
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 407 AEGKLDKHGKLNEKTPQEWARNVV 430
A+GKLDK+G++NE TP++W + V
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYV 387
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex,
box H/ACA, snoRNP, pseudouridine synthase, RNA
modification; 1.95A {Methanocaldococcus jannaschii}
SCOP: b.122.1.1 d.265.1.2
Length = 357
Score = 528 bits (1363), Expect = 0.0
Identities = 143/344 (41%), Positives = 203/344 (59%), Gaps = 4/344 (1%)
Query: 51 IKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKP 110
+ + + + + L V+ T G +P +R + D I+YG++ +DKP
Sbjct: 15 GHIEGRHMILLEKTQEKKINDKEELIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKP 74
Query: 111 ANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVA 170
P+SHEV W+K+IL ++K GH GTLDPKVTG L V ++RAT+ + KEYVC+
Sbjct: 75 RGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLM 134
Query: 171 RLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFW 230
LH + R + TG ++QRPPL +AVKR+LRIR I+E +LL+ D V+F
Sbjct: 135 HLHRDA-SEEDILRVFKEFTGRIYQRPPLKAAVKRRLRIRKIHELELLDKDGKD--VLFR 191
Query: 231 ISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYR 290
+ C++GTY+R +C +G LG HMQELRR +SG E D V + D++DA +
Sbjct: 192 VKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKD-AVYLQDLLDAYVFWKEDG 250
Query: 291 DEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 350
DE LRRVI P+E L K++VVKD+ V+AIC+GA + + G+ + I GE V++ T
Sbjct: 251 DEEELRRVIKPMEYGLRHLKKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVET 310
Query: 351 TKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWG 394
KGEAVA+G A M T + D GV ++RV MDR TYPR W
Sbjct: 311 LKGEAVAVGKALMNTKEILNADKGVAVDVERVYMDRGTYPRMWK 354
>2aus_C Pseudouridine synthase; isomerase, structural protein,
isomerase-structural protein; 2.10A {Pyrococcus abyssi}
PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A*
2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Length = 334
Score = 498 bits (1285), Expect = e-175
Identities = 145/322 (45%), Positives = 206/322 (63%), Gaps = 4/322 (1%)
Query: 73 DRLNVRTGHYTPLPN-GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKT 131
+ V+ P G+ P KRP+ +I+YG+INLDKP P+SHEVVAWIKRIL +EK
Sbjct: 16 REVIVKDDKAETNPKWGFPPDKRPIELHIQYGVINLDKPPGPTSHEVVAWIKRILNLEKA 75
Query: 132 GHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTG 191
GH GTLDPKV+G L V ++RATR+V++ AGKEYV + LH VP+ K+ ++ G
Sbjct: 76 GHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVALMHLHGDVPE-DKIRAVMKEFEG 134
Query: 192 AVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILG 251
+ QRPPL SAVKR+LR R +Y ++LE D V+F + EAGTY+R++ H+GL LG
Sbjct: 135 EIIQRPPLRSAVKRRLRTRKVYYIEILEIDGRD--VLFRVGVEAGTYIRSLIHHIGLALG 192
Query: 252 VGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKR 311
VG HM ELRR RSG E++ +VT+HD++D + E Y+R+ I P+E + +
Sbjct: 193 VGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVEHLPK 252
Query: 312 LVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATC 371
+ +KD+ V A+ +GA L +PG+++ I+ G+ V +MT K E VALG A M+T M
Sbjct: 253 IWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIER 312
Query: 372 DHGVVARIKRVVMDRDTYPRKW 393
G+ +++V M RD YP+ W
Sbjct: 313 SKGIAVDVEKVFMPRDWYPKLW 334
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation,
lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima}
SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Length = 309
Score = 197 bits (503), Expect = 2e-58
Identities = 73/325 (22%), Positives = 124/325 (38%), Gaps = 59/325 (18%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ KP P+SH+VV +++ L+ K GH GTLDP G LI+ +++ TR+++ +
Sbjct: 4 GILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDL 63
Query: 163 GKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y RL + ++ A+ + G Q PP SA K
Sbjct: 64 KKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYK 123
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
+ I++ + + V F + GTY+R++C+ +G
Sbjct: 124 GERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRD--VSFRVEVSPGTYIRSLCMDIGYK 181
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSY 309
LG G EL R G + + + + + I+PLE L
Sbjct: 182 LGCGATAVELVRESVGPHTI-EESLNVFEA-----------APEEIENRIIPLEKCLEWL 229
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
R+VV + I G+++ + L ++ + GE V + +G +AL AE
Sbjct: 230 PRVVVHQESTKMILNGSQIHLEMLKEWDGFKK-GEVVRVFNEEGRLLALAEAE------- 281
Query: 370 TCDHGVVARIKRVVMDRDTY--PRK 392
+ R + RK
Sbjct: 282 --RNSSFLETLRKHERNERVLTLRK 304
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop,
lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli}
SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Length = 327
Score = 195 bits (499), Expect = 8e-58
Identities = 78/319 (24%), Positives = 132/319 (41%), Gaps = 54/319 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS++ + +KRI + GH+G LDP TG L +C+ AT+ + +
Sbjct: 26 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 85
Query: 163 GKEYVCVARL----------------HDKVPDVAKVARALEALTGAVFQRPPLISAVK-- 204
K Y +ARL ++A AL+ G + Q P + SA+K
Sbjct: 86 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 145
Query: 205 ---------------RQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLI 249
R+ R T+YE + ++ + + I C GTY+RT+ LG
Sbjct: 146 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 203
Query: 250 LGVGGHMQELRRVRSGILGENDNMVTMHDV--MDAQWLYDNYRDEAYLRRVIMPLEVLLT 307
LG G H+ LRR+ + MVT+ + + Q + L ++MP++ +
Sbjct: 204 LGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 262
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAV 367
Y + + T+ G + G E +V +T +G+ E+
Sbjct: 263 DYPVVNLPLTSSVYFKNGNPVRTSGAPL--------EGLVRVTEGENGKFIGMGEID--- 311
Query: 368 MATCDHGVVARIKRVVMDR 386
D G V +R+V++
Sbjct: 312 ----DEGRV-APRRLVVEY 325
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP
assembly, X-linked dyskeratosis congenita; 2.80A
{Saccharomyces cerevisiae}
Length = 195
Score = 184 bits (467), Expect = 6e-55
Identities = 85/161 (52%), Positives = 118/161 (73%), Gaps = 3/161 (1%)
Query: 269 ENDNMVTMHDVMDAQWLYDNYRD-EAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAK 327
+ + + H RD ++Y+ PLE LL YKR+VVKD+ VNA+CYGAK
Sbjct: 36 DKLLVRSGHYTPIPAGSSPLKRDLKSYISS--GPLETLLVGYKRIVVKDSAVNAVCYGAK 93
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
LMIPGLLR+E IE+ +E+VL+TTKGEA+A+ IA+M+T +A+CDHGVVA +KR +M+RD
Sbjct: 94 LMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERD 153
Query: 388 TYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARN 428
YPR+WGLGP A KK++ A+GKLDK+G++NE TP++W +
Sbjct: 154 LYPRRWGLGPVAQKKKQMKADGKLDKYGRVNENTPEQWKKE 194
Score = 77.7 bits (191), Expect = 1e-16
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 45 TAKDFIIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRY 102
+ +DF+IKP++ S DTS+WP+LLKN+D+L VR+GHYTP+P G SPLKR L YI
Sbjct: 8 SKEDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISS 65
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification,
structural genomics, PSI, structure initiative; 1.90A
{Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Length = 316
Score = 187 bits (478), Expect = 7e-55
Identities = 83/334 (24%), Positives = 121/334 (36%), Gaps = 69/334 (20%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ +DKPA +SH+VV +RI + GH+GTLDP TG L++ I+RAT+++ A
Sbjct: 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66
Query: 163 GKEYVCVARL----------------HDKVP-DVAKVARALEALTGAVFQRPPLISAVK- 204
K Y RL + + A+E L G + Q P +SA+K
Sbjct: 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
Query: 205 ----------------RQLRIRTIYESKLLEYDVDRHL--VVFWISCEAGTYVRTMCVHL 246
+ R I +LL L + I C +GTY+R + L
Sbjct: 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
G LGVGGH+ LRR R G D ++ D+ + E L
Sbjct: 187 GDALGVGGHVTALRRTRVGRFEL-DQARSLDDL------------AERPALSLSLDEACL 233
Query: 307 TSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTA 366
+ R + +A G L G+ G +AL
Sbjct: 234 LMFARRDLTAAEASAAANGRSLPAVGI---------DGVYAACDADGRVIALLR------ 278
Query: 367 VMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAS 400
D G R V+ +P G A+
Sbjct: 279 -----DEGSRTRSVAVLRPATMHPGGVPRGKLAA 307
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown
function; 1.73A {Pyrococcus horikoshii}
Length = 179
Score = 101 bits (252), Expect = 6e-25
Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 4/154 (2%)
Query: 236 GTYVRTMCVHLGLILGVGGHMQELRR---VRSGILGENDNMVTMHDVMDAQWLYDNYRDE 292
V+ + L + G + L + V+ + ++ ++D D
Sbjct: 18 KKDVKEIIAQLSQMFGEEIARKMLNKKDEVKVAEFDKTTEIILVNDKPMFIRRKDLIFPL 77
Query: 293 AYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLM-TT 351
+ E L +R+VV + V I GA +M PG++ + I+ G+ V ++
Sbjct: 78 VIALYNLSDEEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEK 137
Query: 352 KGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
G +A+GIA M+ VM + G ++ D
Sbjct: 138 YGRPLAIGIALMSGKVMKEKNRGKAVKVIHHARD 171
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10,
RNA modification, thump domai; HET: EPE; 2.0A {Homo
sapiens}
Length = 530
Score = 95.7 bits (237), Expect = 5e-21
Identities = 24/149 (16%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Query: 121 WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVA 180
+ I +++ ++ + +V +V + + + ++ K Y + + +
Sbjct: 370 TSQEIKELQQKINNSSNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQK-K 428
Query: 181 KVARALEALTGAVFQRPPLISAVKRQL--RIRTIYESKLLEYDVDRHLVVFWISCEAGTY 238
+ + + Q+ PL +R L R R I+ + VD H + +AGTY
Sbjct: 429 DIEFLNDIKDLKIDQKTPLRVLHRRPLAVRARVIHFMETQY--VDEHHFRLHLKTQAGTY 486
Query: 239 VRTMC--------VHLGLILGVGGHMQEL 259
++ ++G ++ V + EL
Sbjct: 487 IKEFVHGDFGRTKPNIGSLMNVTADILEL 515
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR
structure initiative; 2.10A {Thermoplasma acidophilum
dsm 1728} SCOP: b.122.1.1 d.17.6.2
Length = 153
Score = 85.6 bits (212), Expect = 6e-20
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 9/143 (6%)
Query: 259 LRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP----LEVLLTSYKRLVV 314
++ + + + A Y + + ++P L S + V
Sbjct: 16 WEQMSRYGIDITGESLEVAAQKSASAYYIGGKPMVFQAGDLIPSVYLLNYRNPSRNIVTV 75
Query: 315 KDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHG 374
+ I G+ L PG++ ++ I G+ + + ++KG +A+G+AEM + G
Sbjct: 76 DEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGEVMATKRG 135
Query: 375 VVARIKRVVMDRDTYPRKWGLGP 397
ARI D P
Sbjct: 136 KAARIIHFPGDEL-----IRAFP 153
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 77.3 bits (190), Expect = 1e-16
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 279 VMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFEN 338
++ + L+ R+ + + + L V + + GA +M PGL
Sbjct: 63 TVNGELLFFRQREGPFYPTLRL-LHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGA 121
Query: 339 DIEVGEE----VVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMD 385
+ ++ A+ +G+ +M+ + + G+ + D
Sbjct: 122 KLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVNKGIGIENIHYLND 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 91/543 (16%), Positives = 150/543 (27%), Gaps = 211/543 (38%)
Query: 25 ND----AAALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPI-------LLKNYD 73
ND AA L + +D +IK ++ + ++ P L +
Sbjct: 99 NDIHALAAKLLQE------NDTTLVKTKELIK--NYITARIMAKRPFDKKSNSALFRAVG 150
Query: 74 RLNVRT-------GH-----------YTPLPNGYSPLKRPLVDYIRYGIINLDK-PANPS 114
N + G+ Y Y L L+ + + L + +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQT----YHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 115 SH-----EVVAWIKRILRVEKTGHSGTLD--PKVTGNLIVCIDRATRLVKSQQGAGKEYV 167
++ W++ T L P ++ LI ++ Q A YV
Sbjct: 207 KVFTQGLNILEWLEN---PSNTPDKDYLLSIP-ISCPLIG-------VI---QLA--HYV 250
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLE--YD-VDR 224
A+L P ++ L+ TG L++AV I E+ E + V +
Sbjct: 251 VTAKLLGFTP--GELRSYLKGATGHS---QGLVTAV-------AIAETDSWESFFVSVRK 298
Query: 225 HL-VVFWISCEA-GTYVRTM--------CVHLG-----LILGVGG----HMQELRRVRSG 265
+ V+F+I Y T + +L + +Q+ +
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 266 ILGEN-----------DNMV-TMHDVMDAQWLYDNYRDEAYLRRVIMP------------ 301
L N+V + Q LY LR+ P
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGP----PQSLY---GLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 302 ---------LEV-------LLTSYKRLVVKDTTVNAICYGAK-LMIPGLLRFENDIEVGE 344
L V LL L+ KD N + + AK + IP
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP------------- 458
Query: 345 EVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRASMKKK 404
V T G + + RI ++ P KW
Sbjct: 459 --VYDTFDGS------------DLRVLSGSISERIVDCII---RLPVKW----------- 490
Query: 405 LIAEGKLDKHGKLNEKTPQEWARNVV-LPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL 463
E T Q A +++ PGG S + L T K+ GV R +
Sbjct: 491 --------------ETTTQFKATHILDFGPGGASGLGVL------THRNKDGTGV--RVI 528
Query: 464 DAS 466
A
Sbjct: 529 VAG 531
Score = 56.6 bits (136), Expect = 2e-08
Identities = 94/542 (17%), Positives = 163/542 (30%), Gaps = 190/542 (35%)
Query: 42 NNATAKDFIIKPQSFTPSID--TSQWPILLKNYDRLNVRTGHYTPLP-NGYSPLKRP--- 95
+ + + + S + T+ + +L + P P G++ P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 96 --LV-DYIRYGIINLDKPANPSSHEVVAWIKRILR-VEKT---G---HS--GTLDPKVTG 143
LV ++ Y + +L +P+ + V + L E G H+ L +
Sbjct: 58 AELVGKFLGY-VSSLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 144 NLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARAL--EALTG-----AVF-- 194
L+ + L+K+ Y+ AR+ K P K AL G A+F
Sbjct: 115 TLV----KTKELIKN-------YI-TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 195 Q-----------------RP---PLISAVKRQLR--IRTIYE-SKLLEYDVDRHLVVFW- 230
Q LI L IRT + K+ ++ ++ W
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN---ILEWL 219
Query: 231 ----------------ISC------EAGTYVRTMCVHLGLILGVGGHMQELRRVRSGILG 268
ISC + YV T LG ELR G G
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-AKLLGF------TPGELRSYLKGATG 272
Query: 269 ENDNMVTMHDVMDAQ-WLYDNYRDEAYLRRVIMPLEVL----LTSYKRLVVKDTTVNAIC 323
+ +VT + + W E++ V + VL + Y+
Sbjct: 273 HSQGLVTAVAIAETDSW-------ESFFVSVRKAITVLFFIGVRCYE------------A 313
Query: 324 YGAKLMIPGLLRFENDIEVGEEV-VLM-TTKGEAVALGIAEMTTAVMATCDHG------V 375
Y + P +L E+ +E E V M + L ++ V T H
Sbjct: 314 YPNTSLPPSIL--EDSLENNEGVPSPMLSISN----LTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 376 VARI----KRVVMDRDTYPRKWGLGPRASMK------KKLIAEGKLDKHGKLNEKTP--Q 423
++ + VV + GP S+ +K A LD+ + P +
Sbjct: 368 ISLVNGAKNLVV----S-------GPPQSLYGLNLTLRKAKAPSGLDQS-----RIPFSE 411
Query: 424 EWAR--NVVLPPGGDSVVA----SLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKA 477
+ N LP V + L A + + D ++ + NAK
Sbjct: 412 RKLKFSNRFLP-----VASPFHSHLLVPASDLINK-----------DLVKNNVSFNAKDI 455
Query: 478 KV 479
++
Sbjct: 456 QI 457
Score = 48.5 bits (115), Expect = 6e-06
Identities = 72/449 (16%), Positives = 108/449 (24%), Gaps = 226/449 (50%)
Query: 158 SQ-QGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESK 216
SQ QG G + L+ A+ V+ R
Sbjct: 1626 SQEQGMGMD------LYKTSK----AAQD-------VWNR-------------------- 1648
Query: 217 LLEYDVDRHLVV---FWISCEAGTYVR----TMCVHLGLILGVGGHMQELRRVRSGILGE 269
D H F I V + +H G G G +R+R
Sbjct: 1649 -----ADNHFKDTYGFSIL----DIVINNPVNLTIHFG---GEKG-----KRIR------ 1685
Query: 270 NDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMP-LEVLLTSYKRLVVKDTTVNAICYGAKL 328
+N M +++ D I + TSY
Sbjct: 1686 -ENYSAM--------IFETIVDGKLKTEKIFKEINEHSTSY------------------- 1717
Query: 329 MIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRDT 388
F E+ +L T+ AL A +
Sbjct: 1718 ------TFR-----SEKGLLSATQFTQPAL----TLMEKAAF----------EDL----- 1747
Query: 389 YPRKWGLGPRASMKKKLIAEGKLDKH--GKLNEKTPQEWARNVVLPPGGDSVVASLAAAA 446
+ GL P + A G H G E+A A LA+ A
Sbjct: 1748 --KSKGLIPADAT----FA-G----HSLG--------EYA-------------A-LASLA 1774
Query: 447 -----EQTVAEKETAGVKKR--------KLDASGDSP----ALNAKK-------AKVEEV 482
E V E V R D G S A+N + ++ V
Sbjct: 1775 DVMSIESLV---EV--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 483 VEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKEN----------GGADTEVVEK- 531
VE + T + V EI V N G D ++
Sbjct: 1830 VERVGKRTGWL--V------EI-V--------------NYNVENQQYVAAG-DLRALDTV 1865
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKK 560
T + K + D + ++ E+ +
Sbjct: 1866 TNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 35.8 bits (82), Expect = 0.046
Identities = 35/224 (15%), Positives = 60/224 (26%), Gaps = 71/224 (31%)
Query: 67 ILLKNYDRLNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPAN------PSSHEVVA 120
I L N + V +G L Y L +R P+ P S +
Sbjct: 368 ISLVNGAKNLVVSGPPQSL---YG-----LNLTLR----KAKAPSGLDQSRIPFSERKLK 415
Query: 121 WIKRILRVEKTG--HSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVP- 177
+ R L V HS L P A+ L+ + ++P
Sbjct: 416 FSNRFLPV--ASPFHSHLLVP------------ASDLINKDLVKNNVSFNAKDI--QIPV 459
Query: 178 -DVAKVARALEALTGAVFQ--RPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCE 234
D G+ + + + + + ++ H++ F
Sbjct: 460 YDTF---------DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-THILDF----- 504
Query: 235 AGTYVRTMCVHLGLILGVGGHMQELRR---VR---SGILGENDN 272
G G G+G + VR +G L N +
Sbjct: 505 -GP---------GGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 8e-08
Identities = 63/442 (14%), Positives = 122/442 (27%), Gaps = 168/442 (38%)
Query: 164 KEYV-CVARLHDKVPDVAK--VARA--LEALTGAVFQ-RPP---------------LISA 202
+ Y+ RL++ AK V+R L A+ + RP +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 203 VKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQEL-RR 261
V +++ + K +FW++ +L +Q+L +
Sbjct: 170 VCLSYKVQCKMDFK-----------IFWLN--LKNCNSP-----ETVLE---MLQKLLYQ 208
Query: 262 VRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKR--LVVKD--- 316
+ +D+ + + + LRR++ Y+ LV+ +
Sbjct: 209 IDPNWTSRSDHSSNIK--LRIHSIQA------ELRRLLK-----SKPYENCLLVLLNVQN 255
Query: 317 -TTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGV 375
NA K +L+TT+ + V D
Sbjct: 256 AKAWNAFNLSCK-------------------ILLTTRFKQVT--------------DFLS 282
Query: 376 VARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGKLNEKTPQEWARNVVLPP-- 433
A + +D L P K L+ + L+ + PQ+ LP
Sbjct: 283 AATTTHISLD----HHSMTLTPDEV--KSLLLK-------YLDCR-PQD------LPREV 322
Query: 434 -GGDSVVASLAAAA-----------EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEE 481
+ S+ A + + +K +++S LN V E
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-----LTTIIESS-----LN-----VLE 367
Query: 482 VVEVEK--------EETVKV---------KKVKEDEAEEIEVEKKEKKKKKKKDKENG-- 522
E K + + V + + + V K K +K +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTI 426
Query: 523 ---GADTEVVEKTEKVKAKKHK 541
E+ K E + H+
Sbjct: 427 SIPSIYLELKVKLEN-EYALHR 447
Score = 34.8 bits (79), Expect = 0.086
Identities = 40/286 (13%), Positives = 89/286 (31%), Gaps = 63/286 (22%)
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVT--MHDVM--DAQWLYDNYRDEAYLRRVIMP-LE 303
I+ + R+ +L + + MV + +V+ + ++L + E P +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-----RQPSMM 108
Query: 304 VLLTSYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVAL-GIAE 362
+ +R D N AK + R + +++ + +L + V + G
Sbjct: 109 TRMYIEQR----DRLYNDNQVFAKYNVS---RLQPYLKL-RQALLELRPAKNVLIDG--- 157
Query: 363 M-----TTAVMATC-DHGVVARIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKHGK 416
+ T + C + V + MD + W ++K E L+ K
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCK-----MDFKIF---W-----LNLKNCNSPETVLEMLQK 204
Query: 417 LNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKL---DASGDSPALN 473
L + W + S+ A + + K + L ++ A N
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENCLLVLLNVQNAKAWN 260
Query: 474 A-----------KKAKVEEVVEVEKEETVKVKKVK----EDEAEEI 504
A + +V + + + + DE + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 51.8 bits (124), Expect = 3e-07
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 481 EVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKH 540
V EV + + D+ EE E+ KKK+ K+ +K K
Sbjct: 3 GVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKK------------KKSKGPSA 50
Query: 541 KDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
+ E ++ ++ + +E+ + ++ E+ + D KKKKKKK +
Sbjct: 51 AGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Query: 601 E 601
Sbjct: 111 V 111
Score = 41.8 bits (98), Expect = 5e-04
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 477 AKVEEVVEVEKE--ETVKVKKVKEDEAEEIEVEKKEKKKKKKK------------DKENG 522
A VEEV + +E A E K+K++KKKK DKE+G
Sbjct: 2 AGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESG 61
Query: 523 GADTEVVEKTEK--VKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
+ EV + E+ ++ K+ + DE G + + + KKKKKK K+
Sbjct: 62 ASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 36.4 bits (84), Expect = 0.025
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
A+ AE+ +K K + A+G+ A V+EV + ++ K+ ED+ +
Sbjct: 28 ASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDED 87
Query: 503 EIEVEKKEKKKKKKKDKENGGA 524
KKKKK K+ G
Sbjct: 88 GDGDGDGATGKKKKKKKKKRGP 109
Score = 35.7 bits (82), Expect = 0.040
Identities = 16/85 (18%), Positives = 35/85 (41%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
AA+ + A+K+ KK K ++ + + + V + E + K ++++ E
Sbjct: 27 AASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDE 86
Query: 503 EIEVEKKEKKKKKKKDKENGGADTE 527
+ + + KKKK K+
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKV 111
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 48.6 bits (115), Expect = 1e-06
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 483 VEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKD 542
+ +E ++K +E++ + ++ E K + ++ + K KD
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQ-ELDAASKVME----------------QEWREKAKKD 119
Query: 543 KDEVGSPETEKSEKKKKKKKDKEVEEAKGVD 573
+E ++E+ EK K + + + D
Sbjct: 120 LEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 42.8 bits (100), Expect = 8e-05
Identities = 11/73 (15%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKK 586
+ ++ E ++ + + + + ++ + K + + E+AK + E +SE+
Sbjct: 79 RLTQEPESIRKWREEQRKRL-----QELDAASKVMEQEWREKAK--KDLEEWNQRQSEQV 131
Query: 587 KKKKKKKKDAEEE 599
+K K + A++
Sbjct: 132 EKNKINNRIADKA 144
Score = 41.3 bits (96), Expect = 3e-04
Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 444 AAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE 503
A A++ E E+ ++K + + ++ +++E+ K + ++ + + EE
Sbjct: 75 AQADRLTQEPES--IRKWREE----------QRKRLQELDAASKVMEQEWREKAKKDLEE 122
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTE 533
+ E+ +K K N AD ++ +
Sbjct: 123 WNQRQSEQVEKNK--INNRIADKAFYQQPD 150
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1
d.17.6.4 PDB: 2cx1_A* 1zs7_A
Length = 187
Score = 44.5 bits (105), Expect = 2e-05
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEV-VLMTTKGEAVALGIAEMTTA--- 366
++V A+ GA LMIPG++ E G+ V L V +G+AE+ ++
Sbjct: 94 VVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVAEVDSSALE 153
Query: 367 -VMATCDHGVVARIKRVVMD 385
+ G R + D
Sbjct: 154 KLYREKARGRAVRRVHRLGD 173
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics,
PSI-2, protein structure initiative; 2.04A
{Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1
c.18.1.4 d.17.6.5
Length = 306
Score = 45.6 bits (107), Expect = 3e-05
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRVVMDRD 387
+ G+LR + I + VV +G+A M+ MA + G+ +KR +
Sbjct: 244 IFAGGVLRADEKIRPNDVVVFH--NSRIFGVGLAAMSGKEMAGSEKGIAINVKRKFSEGH 301
Query: 388 TY 389
+
Sbjct: 302 HH 303
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.9 bits (97), Expect = 1e-04
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 452 EKETAGVKKR----KLDASGDSPALNAKKAKVE 480
EK+ +KK KL A +PAL A KA +E
Sbjct: 18 EKQA--LKKLQASLKLYADDSAPAL-AIKATME 47
Score = 29.1 bits (64), Expect = 2.7
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 12/38 (31%)
Query: 10 EKKKHKKKSASAD--AKNDAAALTTDTADADADDNNAT 45
EK+ KK AS A + A AL AT
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAI----------KAT 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 42.8 bits (101), Expect = 3e-04
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 14/131 (10%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
A ++ +V ++ + K +E + +IE E+ KK EN ++++
Sbjct: 879 ARVHYHRTLKAIVYLQCCYRRMMAK-RELKKLKIEARSVERYKKLHIGLEN-----KIMQ 932
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
K+ + + K + EK + E K + E + + E K
Sbjct: 933 LQRKIDEQNKEYKSLL--------EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN 984
Query: 591 KKKKDAEEEEE 601
+ EE +
Sbjct: 985 RVLSLQEEIAK 995
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 12/132 (9%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
L + VE ++ K+ +++ E+ + K +K +E
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN------------LE 955
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
T + +K + E E+++ + + E AK + +K ++
Sbjct: 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015
Query: 591 KKKKDAEEEEEE 602
K K + E+ E
Sbjct: 1016 KYKHETEQLVSE 1027
Score = 36.6 bits (85), Expect = 0.024
Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 21/139 (15%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVE----KKEKKKKK-------KKDKEN 521
K +++ V + +K + K+E KK K + K +
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH 923
Query: 522 GGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEAD 581
G + ++++ K+ + + K + + + +K + E
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE----------RLR 973
Query: 582 KSEKKKKKKKKKKDAEEEE 600
SE++ K + + +EE
Sbjct: 974 MSEEEAKNATNRVLSLQEE 992
Score = 34.7 bits (80), Expect = 0.10
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
A N + EE+ ++ KE + K E + + + ++ + ++N TE E
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
++ + + + + E + E+ K+ + D E +
Sbjct: 1042 LNRRIHDQAKEITETM---EKKLVEETKQLELDLNDERLR 1078
Score = 33.2 bits (76), Expect = 0.34
Identities = 12/130 (9%), Positives = 45/130 (34%), Gaps = 8/130 (6%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
+ V + + ++ T+ ++ + + + ++ K +++ +
Sbjct: 825 FQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKH--------VRG 876
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
+ H+ + + K++ K EA+ V+ + + K + ++K
Sbjct: 877 WLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Query: 593 KKDAEEEEEE 602
+ +E +
Sbjct: 937 IDEQNKEYKS 946
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 42.5 bits (100), Expect = 4e-04
Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
E+ + +++ + +A L AKK ++EE++ E +++ E E
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL---HEMEARIE-----EEE 940
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKT-EKVKAKKHKDKDEVGSPETEKSEKKKKKK 561
E + + +KKK ++ + E E +K++ +K ++ E + + +
Sbjct: 941 ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Query: 562 K-DKEVEEAKG-VDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K KE + + V + A++ EK K K K E E
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Score = 42.5 bits (100), Expect = 4e-04
Identities = 22/135 (16%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKT 532
N K K +++E + +E++A+ + K + + + + + + ++
Sbjct: 999 NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058
Query: 533 EKVKAKKHKDK----DEVGSPETEKSE-KKKKKKKDKEVEEAKGVDNGENVEADKSEKKK 587
EK+K K + +++ + + +E K + KK++E++ A E + + + KK
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118
Query: 588 KKKKKKKDAEEEEEE 602
++ + +E+ E
Sbjct: 1119 RELESHISDLQEDLE 1133
Score = 41.4 bits (97), Expect = 0.001
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
L A+K K+++ + +E+ + +E +++++EK K KK +++ +
Sbjct: 945 QLQAEKKKMQQQMLDLEEQ----LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
K K + + ++ + E+ EK K K K E+ + ++ K EK +++
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK--KEEKSRQEL 1058
Query: 591 KKKKDAEEEEEE 602
+K K E E
Sbjct: 1059 EKIKRKLEGESS 1070
Score = 41.4 bits (97), Expect = 0.001
Identities = 22/158 (13%), Positives = 65/158 (41%), Gaps = 5/158 (3%)
Query: 446 AEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIE 505
AE+ +++ ++++ + L +K + ++ +++ + ED+ ++
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI----LIMEDQNNKLT 1003
Query: 506 VEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV-GSPETEKSEKKKKKKKDK 564
E+K +++ N + E + K+K K E+ + E+ +++ +K +
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063
Query: 565 EVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++E + + E + K + KK+ E +
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101
Score = 40.2 bits (94), Expect = 0.002
Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 8/170 (4%)
Query: 439 VASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKE 498
+ AA ++ EK TA K +K++ D + + K+ + ++ +E +
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMED--DILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 499 DEAEEIEVEKKEKKKKKKKDKENGG---ADTEVVEKTEKVKAKKHKDKDEVGSPETEKSE 555
+E E+ + K K K + E + + ++ EK+K K + ++ E
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
Query: 556 KK---KKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ K + KE E + E+ + K+ KK ++ + + +E+
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 36.7 bits (84), Expect = 0.027
Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 6/160 (3%)
Query: 443 AAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAE 502
A +A + T ++ A+ + + + E K++ E EA
Sbjct: 653 ALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAM 712
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK 562
+ VE K + + + E + + K K + + ETE ++ KK +
Sbjct: 713 SMAVESTGNAKAEAE------SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVR 766
Query: 563 DKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ E+ A+ E +A + + KK K+
Sbjct: 767 EMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGT 806
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 35.5 bits (81), Expect = 0.054
Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Query: 459 KKRKLDASGDSPA-LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEE-IEVEKKEKKKKKK 516
++ KL+ G ++K ++E E ++ E + + KE+E + KEK+ + K
Sbjct: 299 RRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELK 358
Query: 517 KDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGE 576
+ ++ + ++K + + KK +DK + S + E + K++K + ++ +
Sbjct: 359 EAEKELHEKFDRLKKLHQDEKKKLEDKKK--SLDDEVNAFKQRKTAAELLQS-------Q 409
Query: 577 NVEADKSEKKKKKKKKK 593
+A S+ K+ K+KK
Sbjct: 410 GSQAGGSQTLKRDKEKK 426
Score = 29.3 bits (65), Expect = 3.5
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 470 PALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEV- 528
L K+ ++ ++ +E K E E E K+ + +KK E+ +
Sbjct: 333 GELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDE 392
Query: 529 VEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
V ++ K + + ++ K+ K+KK+
Sbjct: 393 VNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKN 427
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 34.8 bits (79), Expect = 0.066
Identities = 14/139 (10%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 460 KRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDK 519
K + P +E + + V + K D + + ++ E +K +K+ K
Sbjct: 59 KVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRKEFK 118
Query: 520 ENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVE 579
E + + + + + ++ + + ++ +++ ++
Sbjct: 119 EQWMKEQKRMNEAVQ---------------ALRRA-QLQYVQRSEDLRARSQGSPEDSAP 162
Query: 580 ADKSEKKKKKKKKKKDAEE 598
K+++++++ EE
Sbjct: 163 QASPGPSKQQERRRRSREE 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 34.8 bits (79), Expect = 0.076
Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 459 KKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
+ RKL A + N K + + E + + V + + E+E+E+ + K K+K
Sbjct: 291 RSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKV 350
Query: 519 KENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENV 578
++ ++ E+ + E++K E+ + ++K + + + E
Sbjct: 351 QKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILE---------- 400
Query: 579 EADKSEKKKKKKKKKK 594
+ + S +K KKK K
Sbjct: 401 QQNSSRTLEKNKKKGK 416
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 34.4 bits (78), Expect = 0.11
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 538 KKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
+K + V T+ KK+ + + EE E D E KK K + +
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVG 352
Query: 598 EEEEE 602
E+
Sbjct: 353 TEQLV 357
Score = 34.0 bits (77), Expect = 0.15
Identities = 16/74 (21%), Positives = 30/74 (40%)
Query: 468 DSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTE 527
++ + K E E + ++ + + E+ V+ E KK K +D N G +
Sbjct: 297 NAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQL 356
Query: 528 VVEKTEKVKAKKHK 541
V EK + + H
Sbjct: 357 VAEKIPENETTHHH 370
Score = 31.3 bits (70), Expect = 0.90
Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 504 IEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKD 563
++ +KE D + E ++++ + KK K +
Sbjct: 289 LQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDT 348
Query: 564 KEVEEAKGVDNGENVEADKSEKKK 587
V + V E + +++
Sbjct: 349 SNVGTEQLVA--EKIPENETTHHH 370
Score = 30.9 bits (69), Expect = 1.2
Identities = 10/65 (15%), Positives = 20/65 (30%)
Query: 538 KKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
K+ + ++ +K+ + K E A N + KK K +
Sbjct: 294 KEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGT 353
Query: 598 EEEEE 602
E+
Sbjct: 354 EQLVA 358
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 33.4 bits (75), Expect = 0.15
Identities = 10/84 (11%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 483 VEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKD 542
+ +E ++K +E++ + + ++ + K + + A ++ E ++ + K+
Sbjct: 92 ADRLTQEPESIRKWREEQRKRL--QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 149
Query: 543 KDEVGSPETEKSEKKKKKKKDKEV 566
K ++K ++ D ++
Sbjct: 150 KI-----NNRIADKAFYQQPDADI 168
Score = 31.4 bits (70), Expect = 0.60
Identities = 8/77 (10%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 526 TEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEK 585
+ ++ E ++ + + + + ++ + K + + E+AK +++E +
Sbjct: 93 DRLTQEPESIRKWREEQRKRL-----QELDAASKVMEQEWREKAK-----KDLEEWNQRQ 142
Query: 586 KKKKKKKKKDAEEEEEE 602
++ +K K + ++
Sbjct: 143 SEQVEKNKINNRIADKA 159
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 33.6 bits (75), Expect = 0.17
Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 14/183 (7%)
Query: 420 KTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKV 479
+ EWAR ++ A ++E E ++ +L +
Sbjct: 57 QQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEV-----KASLMNDDFEK 111
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
+ + E + KE + E K +K KK + VE +K
Sbjct: 112 IKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKE---------VEAAKKAHHAA 162
Query: 540 HKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEE 599
K++ S E + + + K ++V K + +K K+ + +
Sbjct: 163 CKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQY 222
Query: 600 EEE 602
E
Sbjct: 223 MEN 225
Score = 32.8 bits (73), Expect = 0.36
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 8/163 (4%)
Query: 444 AAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVK---KVKEDE 500
A E+ A++ T ++ + +KA + + E E+ + ++ + D+
Sbjct: 49 ARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDD 108
Query: 501 AEEIEVEKKEKKKKKKKDKENGGADTE-VVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
E+I+ +KE K+ + E K +K AKK K+ + + K
Sbjct: 109 FEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEA----AKKAHHAACK 164
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++K EA + + + K +K K+D + +E+
Sbjct: 165 EEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK 207
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1,
STR genomics, PSI-2, midwest center for structural
genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Length = 174
Score = 32.4 bits (74), Expect = 0.22
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 15/131 (11%)
Query: 114 SSHEVVAWIKRILR----VEKTGHSGTLDPKVTG--NLIVCIDRATRLVKSQQGAGKEYV 167
S+ ++ + K IL V G L P V N +D+ +
Sbjct: 7 STQQITDFTKEILVNGEAVTAFDRQGDL-PNVVVTPNFEAGVDQVVDQLAMNDSERDTTA 65
Query: 168 CVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDVDRHLV 227
+ + + + +AL+A V + + + + +K LE+D
Sbjct: 66 IIGKSLA---ECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFD-----A 117
Query: 228 VFWISCEAGTY 238
V + Y
Sbjct: 118 VIVWNANQENY 128
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 33.3 bits (75), Expect = 0.22
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 460 KRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDK 519
R L D AL A + K+ V K+ +K ++ + ++ ++ K+
Sbjct: 290 SRILKMPRDPRALRAPRKKI--HRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNH 347
Query: 520 ENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVE 579
+ + +K A +E G P + KK KK + + V G+
Sbjct: 348 K---------LRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVV--GKKAA 396
Query: 580 ADKSEKKKKKKKKKKDAEEE 599
A K KK +KK EE
Sbjct: 397 ATKKPAADKKPAEKKPTTEE 416
Score = 29.1 bits (64), Expect = 4.3
Identities = 18/99 (18%), Positives = 34/99 (34%)
Query: 459 KKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
K ++ + A ++ + + K K E ++EE V K+ ++KK K
Sbjct: 320 KNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKK 379
Query: 519 KENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKK 557
+ V + KK + + EKK
Sbjct: 380 TVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2aho_B 3v11_B*
Length = 266
Score = 32.7 bits (74), Expect = 0.26
Identities = 20/121 (16%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKA 537
+ +V++ ++ VKV +V ++V K+ +++ K + ++K ++ +
Sbjct: 53 NIRDVLKENRKVIVKVIRVDR-RKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVS 111
Query: 538 KKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
+K K ++ + + K +E+A V GE + D + K ++A
Sbjct: 112 QKLKLSEKDAWEQVAWKLEAKYGDPITAIEKA--VKEGEKILIDAGVPEIWVKPLLEEAS 169
Query: 598 E 598
+
Sbjct: 170 K 170
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 32.4 bits (74), Expect = 0.26
Identities = 8/79 (10%), Positives = 29/79 (36%)
Query: 486 EKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
+ E+ V + ++ E +E++ + +++ + E E + ++
Sbjct: 3 QGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELA 62
Query: 546 VGSPETEKSEKKKKKKKDK 564
+ + E K + + +
Sbjct: 63 AAKAQIAELEAKLSEMEHR 81
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 32.6 bits (75), Expect = 0.30
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDK 519
E VE EE K+ KED +E VE++E++KK K K
Sbjct: 218 TETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 31.4 bits (72), Expect = 0.70
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKD 518
K E V E +EE ++ ++ + E E++E+KK K K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 29.9 bits (68), Expect = 1.9
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 551 TEKSEKKKKKKKDKEVEEAKGVDNGENVEA-DKSEKKKKKKKKKKDAEEEEEE 602
+ K+E ++ +++E + + D+ + ++ E+KK K KK + + E
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 29.1 bits (66), Expect = 4.3
Identities = 6/37 (16%), Positives = 21/37 (56%)
Query: 484 EVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKE 520
EE ++ ++ ++E E+ + E ++++++K +
Sbjct: 218 TETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 31.6 bits (71), Expect = 0.32
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 500 EAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK 559
+ + E++KK ++ K + GA + K + K + +
Sbjct: 61 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRK--------AQREQAIRAA 112
Query: 560 KKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAE 597
K+ K + +K K+ K+K K K +
Sbjct: 113 KEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
Score = 27.7 bits (61), Expect = 8.2
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKK-VKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
KK + EE+ + VK ++ + +I ++ +K + +K +E
Sbjct: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR-----AA 112
Query: 532 TEKVKAKK-HKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
E KAK+ K + K+ K+K K +V +
Sbjct: 113 KEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 32.5 bits (73), Expect = 0.36
Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 8/149 (5%)
Query: 452 EKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEK 511
EKE K K L + KV + V K V V + A + +
Sbjct: 168 EKEVNSKKYYKYS---SEKTLKWLEKKVNQTVVALKANNVNVGARVQSSAY-FSGGQVSR 223
Query: 512 KKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKK-KDKEVEEAK 570
K++ + G ++ + K K E + KK K + E +E
Sbjct: 224 DKEEDYVRYAHGLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDY 283
Query: 571 GVDNGENVEADKSEKK---KKKKKKKKDA 596
N ++++ K K +K K D
Sbjct: 284 TKFNTKDLKTGKKNSKMTAAQKALAKVDK 312
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 32.4 bits (73), Expect = 0.53
Identities = 11/85 (12%), Positives = 32/85 (37%)
Query: 517 KDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGE 576
+ + EVV + K + + +E ++ VD+ E
Sbjct: 535 SEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDE 594
Query: 577 NVEADKSEKKKKKKKKKKDAEEEEE 601
++ ++ ++++ +K+ +E+E
Sbjct: 595 EDSSNNADVSEEERSRKRKLDEKEN 619
Score = 32.0 bits (72), Expect = 0.67
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKA 537
+ EV + KV + ++A + + + D +V+ E+ +
Sbjct: 539 GKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSS 598
Query: 538 KKHKDKDEVGS-----PETEKSEKKKKKKKDKEVEE 568
+E S E E K+ + + KE +
Sbjct: 599 NNADVSEEERSRKRKLDEKENLSAKRSRIEQKEELD 634
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 31.7 bits (71), Expect = 0.54
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 525 DTEVVEKTEKVKAKKHKDKDEVGSPETEKSE---KKKKKKKDKEVEEAKGVDNGENVEAD 581
D + ++ + + +++ + EK + ++K+DK E K E+V
Sbjct: 113 DMQFIKDSCQHYEIEYRHRAA----NLEKCMSELWRMERKRDKNAREMK-----ESVNRL 163
Query: 582 KSEKKKKKKKKKKDAEEEEEE 602
++ + + K+ AE EE+
Sbjct: 164 HAQMQAFVSESKRAAELEEKR 184
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 30.8 bits (69), Expect = 0.56
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKK-VKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
+ KK EEV + +TVK ++ + + I+ + K + +K ++E + +K
Sbjct: 58 HHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKK 117
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK 564
EK +K + G+ ++ S+++ K K
Sbjct: 118 AEKAA-RKAEKAKSAGTQSSKFSKQQAKGAFQK 149
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 31.9 bits (72), Expect = 0.64
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 9/120 (7%)
Query: 492 KVKKVKEDEAEEIEVEKKEKK------KKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
+VK +K +E+ V K + + + N +++ + + K
Sbjct: 606 QVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGA 665
Query: 546 VGSPETEKSEKKKKKKKDKEVEEAKGVDN---GENVEADKSEKKKKKKKKKKDAEEEEEE 602
E E+S + + EE G G + + E+ +K K+K++ E E E
Sbjct: 666 TSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELEN 725
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 32.2 bits (72), Expect = 0.66
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 12/169 (7%)
Query: 436 DSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKK 495
+ + A + E K+ K + + A+ EV+K + K
Sbjct: 563 NKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKS 622
Query: 496 VKEDEAEEIEVEKKEKKKKKKKDKENGGADTE--------VVEKTEKVKAKKH---KDKD 544
+++ E E EVEKK + K K+K A ++ K A+ ++
Sbjct: 623 LRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLK 682
Query: 545 EVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKK 593
+ ++K EK K KD + NG+N + K+E+ K K
Sbjct: 683 GIKRELSDKLEKISKDLKDFS-KSFDEFKNGKNKDFSKAEETLKALKGS 730
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 31.3 bits (70), Expect = 0.74
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 493 VKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETE 552
+ D +I+ +KE + ++ +K +K AK + E
Sbjct: 87 KDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLA--------KVE 138
Query: 553 KSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
K+ K K A + N ++ S + KK + +++ +
Sbjct: 139 KA-KADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQ 187
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 31.6 bits (72), Expect = 0.77
Identities = 21/114 (18%), Positives = 40/114 (35%)
Query: 485 VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKD 544
V ++E K + ED AEE ++ K + + + + K ++ + D
Sbjct: 111 VRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDD 170
Query: 545 EVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
+ + + E + S+K KK+K K KDA +
Sbjct: 171 KEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 224
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 30.5 bits (68), Expect = 0.77
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 505 EVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK-KHKDKDEVGSPETEKSEKKKKKKKD 563
++ +K+KK+ + G E + + + + A K + ++ +K +KK+
Sbjct: 68 DIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRA 127
Query: 564 KEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
+ K V + E K+++ K KK
Sbjct: 128 DRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 31.5 bits (72), Expect = 0.86
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 28/132 (21%)
Query: 478 KVEEVVEVEKEETVKVKK-VKEDE-----------AEEIEVEKKEKKKKKKKDKENGGAD 525
+EE +E E K VK+D+ A+++ +++ + +DK
Sbjct: 491 TIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKL----- 545
Query: 526 TEVVEKTEKVKAKK------HKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVE 579
E K + + ++ + +K K + +A+ E +
Sbjct: 546 -----VAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFD 600
Query: 580 ADKSEKKKKKKK 591
+ K++ K ++
Sbjct: 601 SIKAKYIAKYEE 612
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 31.2 bits (70), Expect = 0.88
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 5/145 (3%)
Query: 457 GVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKK 516
G LD K +++ + + V + E E ++ +
Sbjct: 165 GALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFS 224
Query: 517 KDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGE 576
+ + G + +KV A D S + E + K+ K E+ K
Sbjct: 225 EYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRK-----A 279
Query: 577 NVEADKSEKKKKKKKKKKDAEEEEE 601
++ + D EE++E
Sbjct: 280 SLVERLNALNSSAGADDDDEEEDDE 304
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 30.4 bits (68), Expect = 0.96
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 490 TVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK----HKDKDE 545
T +K + + V+K+ + KK + GA EV++K K + +
Sbjct: 54 TAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALR 113
Query: 546 VGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKK 594
+K++ +KK KK + + K G + K K+
Sbjct: 114 EIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 31.5 bits (71), Expect = 0.98
Identities = 22/137 (16%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 469 SPALNAKKAKVEEVVEVEKEETVKVK---KVKEDEAEEIEVEKKEKKKKKKKDKENGGAD 525
SP +AK++E+ + ++ E V++K K+KE +E+E + + E+
Sbjct: 89 SPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIED-EKQ 147
Query: 526 TEVVEK---TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADK 582
+++ K + + + + +K ++ + V+E + + ++A K
Sbjct: 148 FDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYR-----DKIDALK 202
Query: 583 SEKKKKKKKKKKDAEEE 599
+ + ++ +++A +E
Sbjct: 203 NAIEVERDGMQEEAIQE 219
Score = 29.2 bits (65), Expect = 4.5
Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 14/129 (10%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
LN + E + E K+KE E E+ + K K K+K G + E V
Sbjct: 75 LNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKF--GKELEEVYN 132
Query: 532 TEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKK 591
+A E ++K+ +K V + E+++ + +K+
Sbjct: 133 FMNGEAN------------AEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEI 180
Query: 592 KKKDAEEEE 600
++ E
Sbjct: 181 GERTHAETV 189
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 31.1 bits (70), Expect = 1.1
Identities = 12/93 (12%), Positives = 35/93 (37%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVE 567
KK K KKK + V E + + +D ++ P+ E + + + +
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPL 61
Query: 568 EAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
+ +G + + + ++++++ +
Sbjct: 62 DLEGPLEADLLPEEGLLEEEEEELSLPKVSTSD 94
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 31.1 bits (71), Expect = 1.2
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 467 GDSPALNAKKAKVEEVVE--VEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGA 524
+ P L +V+E VE VE+ ++ ++ +++ + K+KK+K +E G
Sbjct: 34 SNEPELRKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGV 93
Query: 525 DTEVV 529
EVV
Sbjct: 94 KGEVV 98
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 30.5 bits (68), Expect = 1.4
Identities = 12/123 (9%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKK 539
+++ + ++ K K + E E++ ++ + K ++ + ++ +K+ K
Sbjct: 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD----TNAKIASIQKKMSEIK 87
Query: 540 HKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEE 599
+ + + E + ++++ + + + + D ++ + +K + E
Sbjct: 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147
Query: 600 EEE 602
E
Sbjct: 148 VEN 150
Score = 29.7 bits (66), Expect = 2.2
Identities = 16/132 (12%), Positives = 46/132 (34%), Gaps = 2/132 (1%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVE 530
K + + +EE + +K + ++ + +KK E
Sbjct: 36 KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSL 95
Query: 531 KTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
E+ AK+ ++ + K+K + +E + + ++ + +S + + K
Sbjct: 96 NIEEDIAKERSNQAN--REIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK 153
Query: 591 KKKKDAEEEEEE 602
K+ + ++
Sbjct: 154 NIKETQQIIFKK 165
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo
sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Length = 308
Score = 30.3 bits (68), Expect = 1.5
Identities = 15/126 (11%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKK-----EKKKKKKKDKENGGADTEVVEKT 532
+ +++ + + E VKV +V +++ I++ K+ E K + K ++ + +
Sbjct: 55 SINKLIRIGRNECVKVIRVDKEK-GYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVA 113
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKK 592
E ++ K + + + + K K+ + K + ++ + +++
Sbjct: 114 EVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVL 173
Query: 593 KKDAEE 598
+
Sbjct: 174 INNINR 179
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.5 bits (69), Expect = 1.9
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKE------KKKKKKKDKENGGADT 526
V+++V+ + E + A+ + K +K KKK+ + +
Sbjct: 27 FKDPGLVDQLVKADSE-----WRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVP 81
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
E V + + A + + + K D E + +
Sbjct: 82 ENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLE 125
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 30.0 bits (68), Expect = 2.3
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 14/107 (13%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKK---KKKKDKENGGADTEVV 529
A V+ ++E +K+ + + E + K KKK KE G +E+
Sbjct: 30 FADPDIVDAIIEADKK-----WRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIP 84
Query: 530 EKTEKVKAKKHKDKDEVGSPETE------KSEKKKKKKKDKEVEEAK 570
+ ++ ++V K + KE ++ +
Sbjct: 85 PQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLE 131
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 30.2 bits (68), Expect = 2.3
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 7/100 (7%)
Query: 494 KKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK---TEKVKAKKHKDKDEVGSPE 550
K + + + E + +N ++V K K K++
Sbjct: 664 KSIDNFHVLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQH----KA 719
Query: 551 TEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
T+ E K K + + + + + A K
Sbjct: 720 TKGKECCDKLPKIADGDTSDDEEQEDEAPAPPKPKPPSTP 759
Score = 28.7 bits (64), Expect = 7.0
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 25/122 (20%)
Query: 506 VEKKEK-----KK--KKKKDKENGGAD-----------TEVVEKTEKVKAKKHKDKDEVG 547
+ KKEK KK K+ E +V + + K+K++ E+
Sbjct: 622 LNKKEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEIC 681
Query: 548 SPETEKSEKKKKKKKD-------KEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEE 600
+ + + KKKKD + ++ N K K K D ++E
Sbjct: 682 NVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKECCDKLPKIADGDTSDDE 741
Query: 601 EE 602
E+
Sbjct: 742 EQ 743
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 30.2 bits (68), Expect = 2.5
Identities = 22/192 (11%), Positives = 50/192 (26%), Gaps = 2/192 (1%)
Query: 413 KHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGD-SPA 471
+L + + + L Q E + +
Sbjct: 469 YLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWE 528
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEK 531
+ V+ V K EAE + + K + G D ++
Sbjct: 529 GLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGN 588
Query: 532 TEKVKAKK-HKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKK 590
E + A K+ + + E KK K++E ++ + +++
Sbjct: 589 PEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREEC 648
Query: 591 KKKKDAEEEEEE 602
K+ ++
Sbjct: 649 KQDEERVRALGG 660
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 29.2 bits (64), Expect = 3.7
Identities = 25/184 (13%), Positives = 65/184 (35%)
Query: 419 EKTPQEWARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAK 478
K + V+L P V A+ + KK +
Sbjct: 9 NKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKH 68
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
+ E E E+E + + + + + + +K + K+++E A + + A+
Sbjct: 69 LAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAE 128
Query: 539 KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
+ + + + K K+K +K + +E + E ++ +++ +++ ++ EE
Sbjct: 129 EVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEE 188
Query: 599 EEEE 602
Sbjct: 189 NNNW 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.8 bits (64), Expect = 3.9
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 73 DRLNVRTGHYTP---LPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
RL R GH+ L + L+ P D ++++D+P + IK+
Sbjct: 119 SRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK 173
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 29.3 bits (66), Expect = 4.2
Identities = 3/38 (7%), Positives = 17/38 (44%)
Query: 480 EEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKK 517
E ++ + ++E ++ ++ E++++ +
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit;
structural genomics, PSI-2, protein structure
initiative; 1.79A {Rhodopseudomonas palustris}
Length = 378
Score = 29.1 bits (65), Expect = 4.9
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 430 VLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVE 486
+ +LA A EQ+V L+A GD + +VE+V E++
Sbjct: 14 IASDAERIEQRALALAIEQSVE---C------PLEAIGDPAIVANIVGRVEDVAELQ 61
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 29.3 bits (66), Expect = 5.1
Identities = 10/95 (10%), Positives = 37/95 (38%)
Query: 476 KAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKV 535
K + +E+E+ + + KK +E + +E + + + + + +
Sbjct: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998
Query: 536 KAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAK 570
+ ++ + + + + K + +K++E +
Sbjct: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 29.1 bits (65), Expect = 5.1
Identities = 13/149 (8%), Positives = 47/149 (31%), Gaps = 18/149 (12%)
Query: 472 LNAKKAKVEEVVEVEKEETV-----------------KVKKVKEDEAEEIEVEKKEKKKK 514
+ K K + E ++ E + + + E+ ++ E+ +
Sbjct: 1 MKKSKRKNAQAQEAQETEVLVQEEAEELPEFPEGEPDPDLEDPDLALEDDLLDLPEEGEG 60
Query: 515 KKKDKENGGADTEVVEKTEKVKA-KKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVD 573
++E + ++ V+ + + + E E +K ++ + +++ +
Sbjct: 61 LDLEEEEEDLPIPKISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEIT 120
Query: 574 NGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ + + K + +E
Sbjct: 121 GLDPDLIREVVRAKILGSARVRHIPGLKE 149
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2,
protein structure initiative; 2.00A {Bacillus cereus
atcc 14579}
Length = 414
Score = 28.8 bits (64), Expect = 5.2
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 430 VLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAK-KAKVEEVVEVEKE 488
+ + + A T+ + + K V V E+ +
Sbjct: 10 IHDDSHNLEKKAEQIALGLTI---GS------WTHLPHLLQEQLKQHKGNVIHVEELAEH 60
Query: 489 ETVKVKKVKEDEAEEIEV 506
E K+ + I++
Sbjct: 61 EHTNSYLRKKVKRGIIKI 78
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical
domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Length = 182
Score = 28.2 bits (63), Expect = 5.3
Identities = 17/118 (14%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 478 KVEEVVEVEKEETVKVKKVKEDEAEEIEVEKK-----EKKKKKKKDKENGGADTEVVEKT 532
+ +++ + + E V V +V + E I++ K+ E K + K ++ + +
Sbjct: 57 SINKLIRIGRNECVVVIRVDK-EKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVA 115
Query: 533 EKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENV--EADKSEKKKK 588
E ++ K + + + + K K+ + K + ++ D +E +++
Sbjct: 116 EVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDERE 173
>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P,
hydrogen ION transport, hydrolase, ION transport,
transport; NMR {Saccharomyces cerevisiae}
Length = 60
Score = 26.5 bits (58), Expect = 5.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 472 LNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKK 517
L A+K E V + K K+K+ K D A+EI+ K +K K+ K+
Sbjct: 12 LQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKE 57
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.9 bits (64), Expect = 5.5
Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGS--PETEKSEKKKKK 560
E E K + +K + + +N A ++ +K K +D+ + + + + K++
Sbjct: 366 EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEA 425
Query: 561 KKDKEVEEAKGVDNGENVEADKSEKKK 587
K + ++GV N + ++ E++K
Sbjct: 426 NKAMGKKTSEGVTNEKGTDSQAMEEEK 452
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 28.4 bits (63), Expect = 5.5
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 481 EVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKE 520
E++ EKE+ V K +E+ A++ ++ +K+ KK+K +E
Sbjct: 147 EMILTEKEQIVP--KPEEEVAQKKKISQKKLKKQKLMARE 184
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 29.0 bits (64), Expect = 5.6
Identities = 12/124 (9%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
+ + + + + ++ + +E+++ +K E +
Sbjct: 78 TSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQW--------------QQ 123
Query: 539 KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEE 598
++ + S + EK K + + ++ +AK + + D+ + K K +
Sbjct: 124 LQQELTKTHSQDIEKL-KSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFA 182
Query: 599 EEEE 602
Sbjct: 183 HHNR 186
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 28.2 bits (62), Expect = 6.0
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 111 ANPSSHEVVAWIK--RILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC 168
P + +K +++ ++ T +L V + GK VC
Sbjct: 118 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTF------TPVIEDIGKVLVC 171
Query: 169 VARLH 173
A+LH
Sbjct: 172 RAKLH 176
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 28.2 bits (62), Expect = 6.2
Identities = 27/175 (15%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 447 EQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEI-- 504
+ + +K + + DS + K+ E++ + +E +++ KE A E
Sbjct: 52 REELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTA 111
Query: 505 ------------------EVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV 546
E + K KKK + +V+ ++ KA + + K E+
Sbjct: 112 KITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEI 171
Query: 547 GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ ++ + K +K + ++ + ++K+ + +++ AE EE+
Sbjct: 172 NNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEK 226
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 28.7 bits (64), Expect = 6.2
Identities = 8/67 (11%), Positives = 27/67 (40%)
Query: 536 KAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKD 595
K + ++ + +++ +++ +E + + E +K++ + D
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTD 314
Query: 596 AEEEEEE 602
E +EE+
Sbjct: 315 TEMKEEQ 321
>3okf_A 3-dehydroquinate synthase; structural genomics, center for
structural genomics of infec diseases, csgid, NAD,
lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Length = 390
Score = 28.4 bits (64), Expect = 6.5
Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 26/98 (26%)
Query: 353 GEAVALGI--AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL---GPRASMKKKLIA 407
GEAV+ G A T + D RI ++ +K L P +
Sbjct: 293 GEAVSAGTVMAAKTAQLQGLIDASQFERILAIL-------KKAHLPVRTPENMTFADFMQ 345
Query: 408 EGKLDK---HGKLNEKTPQEWARNVVLPPG-GDSVVAS 441
DK G+L +VLP G S V
Sbjct: 346 HMMRDKKVLAGEL----------RLVLPTSIGTSAVVK 373
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 28.7 bits (64), Expect = 7.1
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 475 KKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGAD 525
+AK E +K+E + + E + +E +++ +K K+ +E+G D
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFD 439
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Length = 368
Score = 28.4 bits (64), Expect = 7.2
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 15/95 (15%)
Query: 353 GEAVALGI--AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL---GPRASMKKKLIA 407
GEA+A+G+ A M V+ ++ K G P S +
Sbjct: 263 GEAIAVGMIYAAKIANRMNLMPEHDVSAHYWLL-------NKIGALQDIPLKSDPDSIFH 315
Query: 408 EGKLDKHGKLNEKTPQEWARNVVLPPG-GDSVVAS 441
D K E ++L G G + +
Sbjct: 316 YLIHDN--KRGYIKLDEDNLGMILLSGVGKPAMYN 348
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 28.5 bits (62), Expect = 7.7
Identities = 15/143 (10%), Positives = 45/143 (31%), Gaps = 9/143 (6%)
Query: 462 KLDASGDSPALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
+ + K+ ++ + + E + + V + + E IE + + + +
Sbjct: 659 EDGPNTSRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQ 718
Query: 522 GGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEE--AKGVDNGENVE 579
++ ++ K + ++ E K DK +EE + ++
Sbjct: 719 E----QLKSMINELINSKISTFLRD---QMDQFELKINALLDKILEEKVTRIIEQKLGSH 771
Query: 580 ADKSEKKKKKKKKKKDAEEEEEE 602
K K+ + + +
Sbjct: 772 TGKFSTLKRPQLYMTEEHNVGFD 794
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte
tuberculosis, nicotinamide adenine dinucleotide
(NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis}
PDB: 3qbd_A
Length = 368
Score = 28.4 bits (64), Expect = 8.2
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 353 GEAVALGI--AEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGL--GPRASMKKKLIAE 408
G AV++G+ A + D R + ++ GL +L+
Sbjct: 272 GAAVSVGLVFAAELARLAGRLDDATAQRHRTIL-------SSLGLPVSYDPDALPQLLEI 324
Query: 409 GKLDK---HGKL 417
DK G L
Sbjct: 325 MAGDKKTRAGVL 336
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 28.4 bits (64), Expect = 9.2
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 16/98 (16%)
Query: 487 KEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEV 546
++E K+ + E AE ++K + N D ++ T K + ++ DK
Sbjct: 509 EDEIQKMVRDAEANAEA------DRKFDELVQTRNQ-GDH-LLHSTRK-QVEEAGDK--- 556
Query: 547 GSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSE 584
+K + +E A ++ +EA E
Sbjct: 557 ----LPADDKTAIESALTALETALKGEDKAAIEAKMQE 590
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.360
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,238,746
Number of extensions: 611575
Number of successful extensions: 2552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2126
Number of HSP's successfully gapped: 280
Length of query: 602
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 503
Effective length of database: 3,937,614
Effective search space: 1980619842
Effective search space used: 1980619842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.6 bits)