RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007467
(602 letters)
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 245
Score = 225 bits (574), Expect = 2e-70
Identities = 106/219 (48%), Positives = 151/219 (68%), Gaps = 3/219 (1%)
Query: 88 GYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIV 147
G+ P KRP+ +I++G+INLDKP P+SHEVVAWIK+IL +EK GH GTLDPKV+G L V
Sbjct: 28 GFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPV 87
Query: 148 CIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVFQRPPLISAVKRQL 207
+++ATR+V++ AGKEYV + LH VP+ K+ + ++ G + QRPPL SAVKR+L
Sbjct: 88 ALEKATRVVQALLPAGKEYVALMHLHGDVPED-KIIQVMKEFEGEIIQRPPLRSAVKRRL 146
Query: 208 RIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIL 267
R R +Y ++LE + L F + EAGTY+R++ H+GL LGVG HM ELRR RSG
Sbjct: 147 RTRKVYYIEVLEIEGRDVL--FRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPF 204
Query: 268 GENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
E++ ++T+HD++D + + E Y R+ I P+E +
Sbjct: 205 KEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAV 243
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 230
Score = 221 bits (565), Expect = 3e-69
Identities = 103/232 (44%), Positives = 142/232 (61%), Gaps = 4/232 (1%)
Query: 75 LNVRTGHYTPLPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHS 134
L V+ T G +P +R + D I+YG++ +DKP P+SHEV W+K+IL ++K GH
Sbjct: 2 LIVKEEVETNWDYGCNPYERKIEDLIKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHG 61
Query: 135 GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHDKVPDVAKVARALEALTGAVF 194
GTLDPKVTG L V ++RAT+ + KEYVC+ LH + + R + TG ++
Sbjct: 62 GTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASEE-DILRVFKEFTGRIY 120
Query: 195 QRPPLISAVKRQLRIRTIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILGVGG 254
QRPPL +AVKR+LRIR I+E L D D V+F + C++GTY+R +C +G LG
Sbjct: 121 QRPPLKAAVKRRLRIRKIHE--LELLDKDGKDVLFRVKCQSGTYIRKLCEDIGEALGTSA 178
Query: 255 HMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
HMQELRR +SG E D V + D++DA + DE LRRVI P+E L
Sbjct: 179 HMQELRRTKSGCFEEKD-AVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGL 229
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB
{Escherichia coli [TaxId: 562]}
Length = 242
Score = 170 bits (431), Expect = 1e-49
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 34/237 (14%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
G++ LDKP SS++ + +KRI + GH+G LDP TG L +C+ AT+ + +
Sbjct: 5 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 64
Query: 163 GKEYVCVARLHDKVPDVAKVAR----------------ALEALTGAVFQRPPLISAVKRQ 206
K Y +ARL + + AL+ G + Q P + SA+K Q
Sbjct: 65 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 124
Query: 207 LRIRT---------------IYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGLILG 251
+ I +LL + + + I C GTY+RT+ LG LG
Sbjct: 125 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 184
Query: 252 VGGHMQELRRVRSGILGENDNMVTMHDVMDA--QWLYDNYRDEAYLRRVIMPLEVLL 306
G H+ LRR+ + MVT+ + + Q + L ++MP++
Sbjct: 185 CGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 240
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 169 bits (429), Expect = 2e-49
Identities = 70/229 (30%), Positives = 100/229 (43%), Gaps = 38/229 (16%)
Query: 103 GIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGA 162
GI+ +DKPA +SH+VV +RI + GH+GTLDP TG L++ I+RAT+++ A
Sbjct: 5 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 64
Query: 163 GKEYVCVARLHDKVP-----------------DVAKVARALEALTGAVFQRPPLISAVKR 205
K Y RL + + A+E L G + Q P +SA+K
Sbjct: 65 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 124
Query: 206 QLRIRTIY-----------------ESKLLEYDVDRHL--VVFWISCEAGTYVRTMCVHL 246
R +LL L + I C +GTY+R + L
Sbjct: 125 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 184
Query: 247 GLILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYL 295
G LGVGGH+ LRR R G D ++ D+ + L + DEA L
Sbjct: 185 GDALGVGGHVTALRRTRVGRFEL-DQARSLDDLAERPALSLSL-DEACL 231
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB
{Thermotoga maritima [TaxId: 2336]}
Length = 228
Score = 154 bits (389), Expect = 8e-44
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 43/238 (18%)
Query: 100 IRYGIINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 159
+++GI+ KP P+SH+VV +++ L+ K GH GTLDP G LI+ +++ TR+++
Sbjct: 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFY 60
Query: 160 QGAGKEYVCVARLH----------------DKVPDVAKVARALEALTGAVFQRPPLISAV 203
+ K Y RL + ++ A+ + G Q PP SA
Sbjct: 61 KDLKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAK 120
Query: 204 KRQLRIR---------------TIYESKLLEYDVDRHLVVFWISCEAGTYVRTMCVHLGL 248
K + + K+ + +++ V F + GTY+R++C+ +G
Sbjct: 121 KYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGY 180
Query: 249 ILGVGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLL 306
LG G EL R G + + + + + + I+PLE L
Sbjct: 181 KLGCGATAVELVRESVGPHTIEE-SLNVFEAAPEE-----------IENRIIPLEKCL 226
>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB,
C-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 85
Score = 99.4 bits (248), Expect = 6e-26
Identities = 39/82 (47%), Positives = 54/82 (65%)
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
K++VVKD+ V+AIC+GA + + G+ + I GE V++ T KGEAVA+G A M T +
Sbjct: 3 KKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEIL 62
Query: 370 TCDHGVVARIKRVVMDRDTYPR 391
D GV ++RV MDR TYPR
Sbjct: 63 NADKGVAVDVERVYMDRGTYPR 84
>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB,
C-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 84
Score = 94.0 bits (234), Expect = 5e-24
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMAT 370
++ +KD+ V A+ +GA L +PG+ + I+ G+ V +MT K E VALG A MT+ M
Sbjct: 3 KVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLE 62
Query: 371 CDHGVVARIKRVVMDRDTYPR 391
G+ +++V M RD YP+
Sbjct: 63 KTKGIAVDVEKVFMPRDWYPK 83
>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 76.4 bits (188), Expect = 6e-18
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
R+VV + I G+++ + L ++ + GE V + +G +AL AE ++ +
Sbjct: 2 PRVVVHQESTKMILNGSQIHLEMLKEWDG-FKKGEVVRVFNEEGRLLALAEAERNSSFLE 60
Query: 370 TCDHGV----VARIKRVVMDR 386
T V +++V R
Sbjct: 61 TLRKHERNERVLTLRKVFNTR 81
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 85
Score = 70.2 bits (172), Expect = 1e-15
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 308 SYKRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAV 367
S + V + I G+ L PG++ ++ I G+ + + ++KG +A+G+AEM
Sbjct: 1 SRNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGE 60
Query: 368 MATCDHGVVARIKRVVMDR 386
+ G ARI D
Sbjct: 61 VMATKRGKAARIIHFPGDE 79
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine
transglycosylase, C3 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 77
Score = 63.3 bits (154), Expect = 2e-13
Identities = 14/74 (18%), Positives = 31/74 (41%)
Query: 310 KRLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMA 369
R+VV G + ++ + I +EV+++ E +A G A ++ M
Sbjct: 3 MRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMI 62
Query: 370 TCDHGVVARIKRVV 383
+G ++++ V
Sbjct: 63 VFQYGRAVKVRKGV 76
>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 68
Score = 60.4 bits (147), Expect = 2e-12
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 328 LMIPGLLRFENDIEVGEEVVLMTTKGEAVALGIAEMTTAVMATCDHGVVARIKRV 382
+ G+LR + I + VV +G+A M+ MA + G+ +KR
Sbjct: 14 IFAGGVLRADEKIRPNDVVVFH--NSRIFGVGLAAMSGKEMAGSEKGIAINVKRK 66
>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525,
C-terminal domain {Archaeon Aeropyrum pernix [TaxId:
56636]}
Length = 93
Score = 44.4 bits (105), Expect = 2e-06
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 311 RLVVKDTTVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTK-GEAVALGIAEMTTAVMA 369
++V A+ GA LMIPG++ E G+ V + + V +G+AE+ ++ +
Sbjct: 3 VVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVAEVDSSALE 62
Query: 370 TC----DHGVVARIKRVVMD 385
G R + D
Sbjct: 63 KLYREKARGRAVRRVHRLGD 82
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.5 bits (66), Expect = 0.48
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 505 EVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDK 564
+ +E +KK + +E + K K + ++ + E K K+K +
Sbjct: 41 DPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Query: 565 EVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++E K EN EA + ++ ++K K AEE +
Sbjct: 101 KMESNK-----ENREAHLAAMLERLQEKDKHAEEVRKN 133
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 30.0 bits (67), Expect = 0.70
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 5/96 (5%)
Query: 507 EKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEV 566
+++ K +K K + K + +K + K V
Sbjct: 191 KEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWIT-----RKKKQWDVLSTKFSSV 245
Query: 567 EEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
++ + + A K++ K+ E E +
Sbjct: 246 KKTQKIGTENIATAYDILKQELNGFKEATFENEINK 281
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 29.3 bits (65), Expect = 1.2
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 508 KKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKK---DK 564
K + K + KE D K K K K+E K+ K+ +
Sbjct: 216 TKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEY----------NKQAKQYQEYQ 265
Query: 565 EVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEEE 602
+ K ++++ + KK +K + E+E +E
Sbjct: 266 KGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKE 303
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 29.4 bits (65), Expect = 1.6
Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 5/176 (2%)
Query: 426 ARNVVLPPGGDSVVASLAAAAEQTVAEKETAGVKKRKLDASGDSPALNAKKAKVEEVVEV 485
++ +VL P +++ + Q + ++E ++ K + P ++A EEVV+
Sbjct: 129 SKYIVLDP-KGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKG 187
Query: 486 EKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDE 545
++ V ++ + + KK++ G + EK K + E
Sbjct: 188 QELAPGVVSRLDGVALYRFPRRVRVEYVKKER----AGLRLPLAAWVEKEAYKPGEILAE 243
Query: 546 VGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKKKKKDAEEEEE 601
+ P ++E++ + + E A V E+ E E+
Sbjct: 244 LPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEK 299
>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme,
N-terminal domain N {Escherichia coli [TaxId: 562]}
Length = 110
Score = 27.6 bits (61), Expect = 1.6
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 412 DKHGKLNEKTPQEWARNVVLPPGGDSVVASL 442
D +G L K+ +A + P S++ L
Sbjct: 78 DANGNLRLKSDP-YAFEAQMRPETASLICGL 107
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.4 bits (65), Expect = 1.7
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 31/142 (21%)
Query: 488 EETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVG 547
E+ + V + + + K+ G + E+ E+ VK ++DE
Sbjct: 617 EKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEES 676
Query: 548 SPETEKSE------------------------------KKKKKKKDKEVEEAKGVDNGEN 577
S E ++ K+K++K+ E+E + +
Sbjct: 677 SHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDI 736
Query: 578 VEADKSE-KKKKKKKKKKDAEE 598
D + ++ ++DAE
Sbjct: 737 WNTDLKAFEVGYQEFLQRDAEA 758
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA,
soluble domain {Thermotoga maritima [TaxId: 2336]}
Length = 232
Score = 28.5 bits (63), Expect = 2.1
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 252 VGGHMQELRRVRSGILGENDNMVTMHDVMDAQWLYDNYRDEAYLRRVIMPLEVLLTSYKR 311
V + L ++ I + ++ + Q + R+ LR+ I PL +L+S R
Sbjct: 166 VDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYR 225
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.4 bits (63), Expect = 2.2
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 473 NAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKEN 521
+ KK VEE + ++ + E E+K ++ K K+K
Sbjct: 280 DPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAE 328
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 28.2 bits (62), Expect = 2.5
Identities = 14/113 (12%), Positives = 32/113 (28%)
Query: 479 VEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAK 538
+ V E +KKV E + + + + D + +
Sbjct: 136 LPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLT 195
Query: 539 KHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKKKKKKK 591
K E + ++ K D E + VD + + + +++
Sbjct: 196 KGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDESRDRYRRR 248
Score = 27.4 bits (60), Expect = 5.2
Identities = 14/128 (10%), Positives = 44/128 (34%), Gaps = 4/128 (3%)
Query: 471 ALNAKKAKVEEVVEVEKEETVKVKKVKEDEAEEIEVEKKEKKKKKKKDKENGGADT---- 526
L V+E+ + + +V+E + + E+ + K ++ E D
Sbjct: 121 LLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYI 180
Query: 527 EVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKKKKKDKEVEEAKGVDNGENVEADKSEKK 586
+ +T ++ A + + ++ E K +D + + + +
Sbjct: 181 QGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDE 240
Query: 587 KKKKKKKK 594
+ + +++
Sbjct: 241 SRDRYRRR 248
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thiobacillus ferrooxidans [TaxId: 920]}
Length = 357
Score = 27.8 bits (61), Expect = 4.2
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 29 ALTTDTADADADDNNATAKDFIIKPQSFTPSIDTSQWPILLKNYDRL----NVRTGHYTP 84
L + A +A + P+ LL+ L N+R P
Sbjct: 53 PLPAASLQL-AMAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFP 111
Query: 85 LPNGYSPLKRPLVDYIRYGII 105
SPL+ LV + ++
Sbjct: 112 QLLDASPLRPELVRDVDILVV 132
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 26.9 bits (58), Expect = 4.8
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 72 YDRLNVRTGHYTP---LPNGYSPLKRPLVDYIRYGIINLDKPANPSSHEVVAWIKR 124
RL R GH+ L + L+ P D ++++D+P + IK+
Sbjct: 116 ESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK 171
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 388
Score = 26.7 bits (58), Expect = 8.1
Identities = 13/85 (15%), Positives = 20/85 (23%), Gaps = 2/85 (2%)
Query: 503 EIEVEKKEKKKKKKKDKENGGADTEVVEKTEKVKAKKHKDKDEVGSPETEKSEKKKK--K 560
E K K ++K EV K + + D + KK+
Sbjct: 297 AHESTFKRAKYLRQKTYIQDIYMKEVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTF 356
Query: 561 KKDKEVEEAKGVDNGENVEADKSEK 585
+ K K V
Sbjct: 357 ENFKVGFSRKMKPKPVQVPGGVVLV 381
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.360
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,179,263
Number of extensions: 109289
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 77
Length of query: 602
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 511
Effective length of database: 1,158,166
Effective search space: 591822826
Effective search space used: 591822826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.4 bits)