Query 007468
Match_columns 602
No_of_seqs 406 out of 2752
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 00:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1230 Protein containing rep 100.0 5.3E-81 1.2E-85 624.8 32.7 480 1-514 1-496 (521)
2 PLN02153 epithiospecifier prot 100.0 8E-44 1.7E-48 375.5 34.6 279 53-348 8-293 (341)
3 PLN02193 nitrile-specifier pro 100.0 1.5E-43 3.2E-48 387.7 35.9 259 61-348 158-419 (470)
4 KOG4693 Uncharacterized conser 100.0 9.1E-42 2E-46 325.5 22.3 262 67-349 12-286 (392)
5 KOG4441 Proteins containing BT 100.0 7.2E-41 1.6E-45 371.5 28.4 284 65-501 272-555 (571)
6 PLN02193 nitrile-specifier pro 100.0 1.5E-39 3.4E-44 356.0 35.0 300 65-502 106-420 (470)
7 KOG1230 Protein containing rep 100.0 1.1E-39 2.5E-44 327.6 23.6 269 121-500 63-348 (521)
8 PLN02153 epithiospecifier prot 100.0 2.2E-38 4.7E-43 334.2 31.3 281 108-501 4-293 (341)
9 PHA02713 hypothetical protein; 100.0 9E-39 1.9E-43 355.9 29.8 266 101-504 272-545 (557)
10 TIGR03548 mutarot_permut cycli 100.0 4.9E-38 1.1E-42 329.1 30.6 249 67-348 2-288 (323)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 6.2E-38 1.3E-42 331.4 29.9 257 63-348 2-307 (346)
12 PRK14131 N-acetylneuraminic ac 100.0 3.5E-37 7.6E-42 328.9 30.9 309 53-497 13-373 (376)
13 KOG4441 Proteins containing BT 100.0 3.7E-37 8E-42 341.9 26.9 244 58-348 312-555 (571)
14 KOG4693 Uncharacterized conser 100.0 1.1E-37 2.3E-42 297.6 19.0 272 112-501 3-285 (392)
15 PHA02713 hypothetical protein; 100.0 5.3E-37 1.1E-41 341.7 26.3 246 58-349 283-543 (557)
16 KOG4152 Host cell transcriptio 100.0 1.1E-36 2.5E-41 311.7 21.2 321 52-494 17-366 (830)
17 PHA03098 kelch-like protein; P 100.0 3.1E-35 6.8E-40 328.4 26.9 272 82-503 251-522 (534)
18 KOG0379 Kelch repeat-containin 100.0 1.1E-34 2.3E-39 317.4 29.0 256 61-348 53-310 (482)
19 PHA03098 kelch-like protein; P 100.0 5.5E-34 1.2E-38 318.4 29.8 237 69-349 285-521 (534)
20 KOG0379 Kelch repeat-containin 100.0 2.9E-34 6.2E-39 314.0 26.0 256 119-503 55-312 (482)
21 PHA02790 Kelch-like protein; P 100.0 5.5E-32 1.2E-36 297.2 27.9 208 81-347 271-478 (480)
22 TIGR03548 mutarot_permut cycli 100.0 7.6E-32 1.7E-36 282.2 26.8 237 58-318 52-315 (323)
23 PHA02790 Kelch-like protein; P 100.0 2.1E-31 4.6E-36 292.6 25.3 211 130-499 267-477 (480)
24 TIGR03547 muta_rot_YjhT mutatr 100.0 5.1E-31 1.1E-35 278.7 26.9 259 59-337 43-344 (346)
25 PRK14131 N-acetylneuraminic ac 100.0 1.2E-30 2.5E-35 278.7 27.7 258 61-345 66-374 (376)
26 KOG4152 Host cell transcriptio 100.0 4E-31 8.8E-36 271.1 17.6 216 111-348 17-247 (830)
27 KOG2437 Muskelin [Signal trans 99.8 4.1E-21 9E-26 197.7 4.4 264 64-348 256-543 (723)
28 COG3055 Uncharacterized protei 99.8 3E-18 6.4E-23 171.8 20.6 258 61-348 29-335 (381)
29 COG3055 Uncharacterized protei 99.7 4.4E-16 9.6E-21 156.3 18.2 257 61-340 74-375 (381)
30 KOG2437 Muskelin [Signal trans 99.6 3.1E-16 6.6E-21 162.1 6.4 167 165-348 238-421 (723)
31 PF13964 Kelch_6: Kelch motif 99.0 4.3E-10 9.3E-15 83.8 6.2 50 124-180 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.0 5.7E-10 1.2E-14 83.2 6.1 50 179-236 1-50 (50)
33 PLN02772 guanylate kinase 98.9 1E-08 2.3E-13 107.5 10.9 88 233-341 22-110 (398)
34 PF13415 Kelch_3: Galactose ox 98.8 1E-08 2.2E-13 76.0 6.5 49 134-188 1-49 (49)
35 PF13415 Kelch_3: Galactose ox 98.8 1.3E-08 2.8E-13 75.4 6.2 49 189-244 1-49 (49)
36 PF13854 Kelch_5: Kelch motif 98.8 3.8E-09 8.3E-14 75.6 2.6 41 450-492 1-41 (42)
37 PF03089 RAG2: Recombination a 98.8 3.3E-07 7.2E-12 90.1 16.6 235 62-311 16-280 (337)
38 PF01344 Kelch_1: Kelch motif; 98.7 1.8E-08 4E-13 73.8 5.5 46 179-227 1-46 (47)
39 PF07646 Kelch_2: Kelch motif; 98.7 2.8E-08 6E-13 73.7 6.1 48 179-227 1-48 (49)
40 PLN02772 guanylate kinase 98.7 6.5E-08 1.4E-12 101.6 10.9 88 177-282 22-110 (398)
41 PF13418 Kelch_4: Galactose ox 98.7 2.9E-08 6.3E-13 73.5 5.3 45 124-173 1-46 (49)
42 PF07646 Kelch_2: Kelch motif; 98.7 4.2E-08 9E-13 72.7 6.0 48 235-290 1-48 (49)
43 PF13418 Kelch_4: Galactose ox 98.7 2.8E-08 6E-13 73.6 4.9 46 179-227 1-47 (49)
44 PF01344 Kelch_1: Kelch motif; 98.7 5E-08 1.1E-12 71.5 6.2 46 235-290 1-46 (47)
45 PF03089 RAG2: Recombination a 98.6 2E-06 4.3E-11 84.8 16.2 178 121-318 19-231 (337)
46 PF13854 Kelch_5: Kelch motif 98.6 1.7E-07 3.6E-12 67.0 5.9 42 121-166 1-42 (42)
47 smart00612 Kelch Kelch domain. 98.3 9.6E-07 2.1E-11 64.1 4.9 47 247-307 1-47 (47)
48 smart00612 Kelch Kelch domain. 98.3 1.2E-06 2.6E-11 63.6 4.6 47 191-246 1-47 (47)
49 TIGR01640 F_box_assoc_1 F-box 98.2 0.00026 5.7E-09 70.3 22.4 204 101-341 14-230 (230)
50 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00011 2.3E-09 73.2 16.4 150 103-290 48-208 (243)
51 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00015 3.2E-09 72.2 15.5 150 155-348 45-207 (243)
52 PRK11138 outer membrane biogen 97.5 0.042 9.2E-07 59.2 25.2 187 81-344 120-319 (394)
53 PRK11138 outer membrane biogen 97.4 0.035 7.7E-07 59.8 23.9 193 81-345 69-282 (394)
54 TIGR03300 assembly_YfgL outer 97.2 0.14 3.1E-06 54.6 25.6 178 101-345 115-305 (377)
55 TIGR01640 F_box_assoc_1 F-box 97.2 0.026 5.6E-07 56.0 18.0 160 156-348 14-186 (230)
56 PF13360 PQQ_2: PQQ-like domai 97.2 0.27 5.9E-06 48.3 27.2 187 81-344 36-237 (238)
57 PF13360 PQQ_2: PQQ-like domai 97.0 0.29 6.2E-06 48.2 23.6 176 101-345 3-199 (238)
58 TIGR03300 assembly_YfgL outer 96.7 0.61 1.3E-05 49.7 24.1 188 81-345 65-267 (377)
59 PF08450 SGL: SMP-30/Gluconola 96.5 0.7 1.5E-05 46.1 22.3 200 81-347 11-221 (246)
60 KOG2055 WD40 repeat protein [G 96.2 0.32 6.9E-06 51.7 17.8 195 62-315 207-407 (514)
61 PF07893 DUF1668: Protein of u 96.2 0.13 2.8E-06 54.3 15.5 123 133-290 75-217 (342)
62 PF12768 Rax2: Cortical protei 95.7 0.57 1.2E-05 48.0 16.6 127 139-289 2-130 (281)
63 PF07893 DUF1668: Protein of u 95.5 0.38 8.1E-06 50.9 15.0 129 186-350 73-218 (342)
64 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 5.9 0.00013 44.5 27.2 218 81-342 69-336 (527)
65 TIGR03866 PQQ_ABC_repeats PQQ- 95.1 4.2 9.2E-05 40.7 21.3 101 83-220 2-106 (300)
66 KOG2055 WD40 repeat protein [G 95.0 0.43 9.2E-06 50.7 13.2 151 134-341 224-376 (514)
67 cd00094 HX Hemopexin-like repe 94.8 2.6 5.6E-05 40.6 17.5 149 81-283 16-178 (194)
68 PRK04792 tolB translocation pr 94.7 3.5 7.6E-05 45.3 20.6 147 156-347 242-390 (448)
69 PRK04792 tolB translocation pr 94.7 3.7 8E-05 45.1 20.7 149 101-289 242-391 (448)
70 cd00216 PQQ_DH Dehydrogenases 94.4 10 0.00022 42.2 24.8 122 81-225 61-193 (488)
71 TIGR02800 propeller_TolB tol-p 94.4 3.8 8.1E-05 44.1 19.7 148 156-348 214-363 (417)
72 cd00094 HX Hemopexin-like repe 94.3 4.1 8.8E-05 39.3 17.8 152 130-342 12-178 (194)
73 PF12768 Rax2: Cortical protei 94.2 0.51 1.1E-05 48.3 11.6 112 208-348 15-130 (281)
74 PRK05137 tolB translocation pr 94.2 10 0.00022 41.3 23.6 193 101-347 226-420 (435)
75 TIGR02800 propeller_TolB tol-p 94.0 9.4 0.0002 41.0 21.9 146 101-289 214-363 (417)
76 PRK04922 tolB translocation pr 94.0 8.9 0.00019 41.8 21.6 182 101-341 228-413 (433)
77 PF05096 Glu_cyclase_2: Glutam 93.8 1.4 3.1E-05 44.3 13.5 111 184-342 49-160 (264)
78 PRK05137 tolB translocation pr 93.8 7.6 0.00016 42.4 20.6 147 156-347 226-374 (435)
79 PRK00178 tolB translocation pr 93.7 8.8 0.00019 41.7 21.0 145 156-348 223-372 (430)
80 cd00200 WD40 WD40 domain, foun 93.6 7.4 0.00016 37.6 20.5 64 81-167 62-126 (289)
81 cd00200 WD40 WD40 domain, foun 93.6 7.5 0.00016 37.6 21.1 105 81-220 20-126 (289)
82 PF03178 CPSF_A: CPSF A subuni 93.6 2.6 5.7E-05 43.9 16.0 140 135-312 42-189 (321)
83 PRK13684 Ycf48-like protein; P 93.5 11 0.00025 39.5 21.9 155 111-315 119-279 (334)
84 PRK04922 tolB translocation pr 93.3 8.6 0.00019 41.9 20.0 146 156-347 228-376 (433)
85 PRK03629 tolB translocation pr 93.1 14 0.00031 40.2 21.5 149 156-348 223-372 (429)
86 PRK11028 6-phosphogluconolacto 93.1 12 0.00027 38.8 23.0 94 101-218 57-157 (330)
87 PRK00178 tolB translocation pr 92.8 12 0.00027 40.5 20.5 145 101-289 223-372 (430)
88 PF04931 DNA_pol_phi: DNA poly 92.8 0.13 2.8E-06 60.5 5.2 11 574-584 758-768 (784)
89 PF10446 DUF2457: Protein of u 92.8 0.029 6.2E-07 59.3 -0.3 23 480-506 26-48 (458)
90 TIGR03866 PQQ_ABC_repeats PQQ- 92.5 12 0.00027 37.3 24.3 95 101-221 95-191 (300)
91 PRK02889 tolB translocation pr 92.4 16 0.00034 39.8 20.5 145 156-347 220-368 (427)
92 PRK13684 Ycf48-like protein; P 92.2 17 0.00038 38.2 20.1 186 68-315 45-234 (334)
93 PRK11028 6-phosphogluconolacto 91.8 18 0.00039 37.5 22.6 128 101-251 102-245 (330)
94 PF02897 Peptidase_S9_N: Proly 91.7 22 0.00047 38.3 21.1 148 156-348 252-413 (414)
95 PF08450 SGL: SMP-30/Gluconola 91.1 17 0.00037 36.0 21.1 162 81-288 51-221 (246)
96 KOG0310 Conserved WD40 repeat- 90.7 28 0.0006 37.7 19.1 135 131-317 162-301 (487)
97 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.3 26 0.00056 39.4 19.9 123 129-287 64-198 (527)
98 PF10282 Lactonase: Lactonase, 90.3 17 0.00038 38.2 17.7 172 68-289 143-333 (345)
99 PF03178 CPSF_A: CPSF A subuni 90.3 8 0.00017 40.2 14.9 143 82-254 42-192 (321)
100 PLN02919 haloacid dehalogenase 90.3 53 0.0012 40.3 26.3 159 134-342 694-891 (1057)
101 PRK03629 tolB translocation pr 90.0 33 0.00071 37.4 23.5 168 101-316 223-394 (429)
102 PF05096 Glu_cyclase_2: Glutam 89.9 5.7 0.00012 40.1 12.6 152 133-344 54-208 (264)
103 PRK04043 tolB translocation pr 89.9 33 0.00072 37.3 21.2 194 101-348 213-409 (419)
104 PF09026 CENP-B_dimeris: Centr 89.6 0.1 2.2E-06 43.3 0.0 7 557-563 44-50 (101)
105 PF10282 Lactonase: Lactonase, 89.3 30 0.00064 36.4 18.4 194 103-348 17-233 (345)
106 PLN00181 protein SPA1-RELATED; 89.0 34 0.00074 40.5 20.6 91 156-282 555-650 (793)
107 PTZ00421 coronin; Provisional 88.9 43 0.00093 37.3 21.2 62 135-220 138-201 (493)
108 PRK02889 tolB translocation pr 87.6 47 0.001 36.1 21.8 147 101-289 220-369 (427)
109 PF02724 CDC45: CDC45-like pro 87.4 0.62 1.4E-05 53.2 4.4 18 574-591 194-211 (622)
110 PF02897 Peptidase_S9_N: Proly 87.3 46 0.001 35.8 24.7 191 101-339 150-357 (414)
111 cd00216 PQQ_DH Dehydrogenases 87.2 46 0.001 36.9 19.1 127 129-287 56-192 (488)
112 PTZ00421 coronin; Provisional 87.0 56 0.0012 36.4 19.5 53 101-167 148-201 (493)
113 PRK04043 tolB translocation pr 86.3 21 0.00045 38.9 15.4 153 156-348 213-366 (419)
114 KOG1832 HIV-1 Vpr-binding prot 85.6 0.4 8.7E-06 54.7 1.6 10 493-502 1370-1379(1516)
115 PF02191 OLF: Olfactomedin-lik 85.5 43 0.00094 33.7 17.9 186 81-313 30-237 (250)
116 COG4257 Vgb Streptogramin lyas 84.5 32 0.0007 34.9 14.0 138 105-288 172-313 (353)
117 PLN00181 protein SPA1-RELATED; 84.2 79 0.0017 37.4 20.2 60 134-219 587-650 (793)
118 KOG0310 Conserved WD40 repeat- 83.1 75 0.0016 34.5 17.5 106 81-219 79-186 (487)
119 PF02724 CDC45: CDC45-like pro 82.2 1.2 2.6E-05 50.9 3.6 14 575-588 191-204 (622)
120 KOG2321 WD40 repeat protein [G 81.8 34 0.00073 38.0 13.9 75 123-220 132-208 (703)
121 KOG0772 Uncharacterized conser 81.5 76 0.0016 34.9 16.2 80 167-257 304-387 (641)
122 PF08268 FBA_3: F-box associat 80.1 36 0.00077 30.2 11.9 86 132-227 3-90 (129)
123 KOG0646 WD40 repeat protein [G 79.7 46 0.001 35.9 13.9 147 72-257 85-240 (476)
124 PF06524 NOA36: NOA36 protein; 79.6 1.3 2.7E-05 43.8 2.3 24 450-473 210-238 (314)
125 PRK10115 protease 2; Provision 79.4 1.3E+02 0.0029 35.0 25.5 148 156-345 199-352 (686)
126 PRK01742 tolB translocation pr 79.1 1E+02 0.0022 33.5 19.0 61 156-226 228-289 (429)
127 COG4257 Vgb Streptogramin lyas 78.5 82 0.0018 32.1 19.0 185 102-350 125-316 (353)
128 PF06524 NOA36: NOA36 protein; 78.5 1.5 3.3E-05 43.2 2.5 20 179-198 122-141 (314)
129 PF08268 FBA_3: F-box associat 77.5 51 0.0011 29.2 12.8 87 186-289 2-89 (129)
130 PRK10115 protease 2; Provision 77.4 1.5E+02 0.0033 34.5 25.2 194 101-348 199-403 (686)
131 KOG4378 Nuclear protein COP1 [ 76.8 46 0.00099 36.3 12.9 51 210-283 188-242 (673)
132 COG4946 Uncharacterized protei 76.4 1.2E+02 0.0027 33.1 16.9 140 101-288 287-439 (668)
133 PF02239 Cytochrom_D1: Cytochr 76.1 1.1E+02 0.0025 32.5 18.1 185 101-346 16-209 (369)
134 PF02191 OLF: Olfactomedin-lik 75.6 94 0.002 31.3 15.9 133 100-252 88-237 (250)
135 KOG3064 RNA-binding nuclear pr 75.4 0.72 1.6E-05 45.3 -0.7 7 245-251 57-63 (303)
136 PLN00033 photosystem II stabil 74.8 1.3E+02 0.0028 32.5 22.2 67 81-171 146-214 (398)
137 PLN00033 photosystem II stabil 74.7 1.3E+02 0.0028 32.5 26.7 121 70-224 89-214 (398)
138 KOG2321 WD40 repeat protein [G 74.6 78 0.0017 35.3 14.1 75 177-282 131-207 (703)
139 KOG0649 WD40 repeat protein [G 73.3 1E+02 0.0023 30.8 15.8 144 66-252 113-263 (325)
140 PF09910 DUF2139: Uncharacteri 72.9 1.2E+02 0.0026 31.3 15.0 135 122-284 30-185 (339)
141 TIGR02658 TTQ_MADH_Hv methylam 72.3 1.4E+02 0.003 31.8 24.4 220 81-342 57-333 (352)
142 TIGR03074 PQQ_membr_DH membran 71.9 2.1E+02 0.0046 33.8 26.7 103 185-288 312-432 (764)
143 COG1520 FOG: WD40-like repeat 71.9 1.4E+02 0.003 31.6 22.0 199 81-347 68-278 (370)
144 KOG0289 mRNA splicing factor [ 71.0 1.4E+02 0.003 32.3 14.5 58 158-227 413-472 (506)
145 PRK01742 tolB translocation pr 70.6 1.6E+02 0.0035 31.9 21.1 158 101-315 228-391 (429)
146 KOG2048 WD40 repeat protein [G 69.2 2.1E+02 0.0046 32.6 16.2 115 81-227 393-515 (691)
147 KOG0296 Angio-associated migra 68.9 1.6E+02 0.0035 31.1 17.7 110 71-219 67-180 (399)
148 KOG0943 Predicted ubiquitin-pr 67.7 3.1 6.8E-05 49.2 2.0 8 162-169 1241-1248(3015)
149 PF12217 End_beta_propel: Cata 67.3 1.5E+02 0.0032 30.0 17.8 168 70-254 76-258 (367)
150 KOG1832 HIV-1 Vpr-binding prot 67.2 4.8 0.0001 46.5 3.2 16 38-53 1013-1028(1516)
151 KOG4264 Nucleo-cytoplasmic pro 66.8 3.4 7.4E-05 44.7 2.0 9 557-565 113-121 (694)
152 KOG0943 Predicted ubiquitin-pr 66.5 3.7 8.1E-05 48.6 2.3 8 506-513 1729-1736(3015)
153 KOG0291 WD40-repeat-containing 65.7 2.6E+02 0.0057 32.4 21.6 161 125-347 307-474 (893)
154 PF06433 Me-amine-dh_H: Methyl 65.2 1.5E+02 0.0033 31.2 13.6 75 81-169 47-131 (342)
155 TIGR03074 PQQ_membr_DH membran 65.0 1.3E+02 0.0028 35.5 14.5 34 184-227 189-224 (764)
156 PF14870 PSII_BNR: Photosynthe 64.1 1.9E+02 0.004 30.1 21.4 186 66-312 14-203 (302)
157 PLN03215 ascorbic acid mannose 63.7 2.1E+02 0.0046 30.6 16.1 102 110-228 189-305 (373)
158 KOG0296 Angio-associated migra 63.1 2.1E+02 0.0045 30.3 16.1 145 134-341 75-222 (399)
159 KOG0316 Conserved WD40 repeat- 62.9 1.7E+02 0.0037 29.2 13.2 121 102-257 40-166 (307)
160 KOG2038 CAATT-binding transcri 61.6 4.9 0.00011 45.7 2.0 10 245-254 729-738 (988)
161 PF02831 gpW: gpW; InterPro: 61.1 8.6 0.00019 30.4 2.8 27 574-600 39-65 (68)
162 PLN02919 haloacid dehalogenase 60.2 4.1E+02 0.0089 32.8 30.8 208 81-348 579-842 (1057)
163 KOG0291 WD40-repeat-containing 60.2 3.3E+02 0.0071 31.7 18.3 126 100-256 329-457 (893)
164 smart00284 OLF Olfactomedin-li 59.4 2E+02 0.0044 29.0 17.4 153 121-312 70-241 (255)
165 KOG0266 WD40 repeat-containing 59.4 2.7E+02 0.0059 30.5 20.7 66 134-221 257-322 (456)
166 KOG0641 WD40 repeat protein [G 57.6 2E+02 0.0043 28.3 18.0 53 189-257 151-205 (350)
167 KOG0772 Uncharacterized conser 57.1 3.1E+02 0.0067 30.4 15.5 136 81-256 178-338 (641)
168 KOG0649 WD40 repeat protein [G 54.8 2.4E+02 0.0051 28.3 14.9 121 110-254 98-226 (325)
169 KOG3130 Uncharacterized conser 54.6 6.2 0.00013 41.4 1.3 6 587-592 346-351 (514)
170 PF14870 PSII_BNR: Photosynthe 54.4 2.7E+02 0.0058 28.9 20.1 191 81-348 71-270 (302)
171 PF02239 Cytochrom_D1: Cytochr 54.3 3E+02 0.0065 29.4 15.6 175 72-299 39-221 (369)
172 COG1520 FOG: WD40-like repeat 54.2 2.9E+02 0.0063 29.2 19.8 188 102-338 122-319 (370)
173 PF14583 Pectate_lyase22: Olig 52.9 3.2E+02 0.007 29.3 17.5 118 210-348 217-337 (386)
174 PRK01029 tolB translocation pr 52.3 3.4E+02 0.0074 29.5 20.7 61 272-348 351-412 (428)
175 PF13088 BNR_2: BNR repeat-lik 52.2 2.5E+02 0.0055 27.9 13.3 150 81-250 118-275 (275)
176 KOG1332 Vesicle coat complex C 51.7 2.7E+02 0.0058 28.0 12.7 55 278-348 241-296 (299)
177 PF15525 DUF4652: Domain of un 51.3 1.8E+02 0.004 27.8 10.3 68 98-173 85-157 (200)
178 PLN03215 ascorbic acid mannose 50.3 3.5E+02 0.0076 29.0 16.5 112 165-291 189-305 (373)
179 COG2706 3-carboxymuconate cycl 50.2 3.3E+02 0.0072 28.7 18.0 174 71-290 147-333 (346)
180 KOG2038 CAATT-binding transcri 48.8 13 0.00028 42.5 2.7 13 303-315 726-738 (988)
181 KOG0316 Conserved WD40 repeat- 48.7 2.9E+02 0.0063 27.6 14.2 93 101-219 81-175 (307)
182 PTZ00420 coronin; Provisional 48.3 4.6E+02 0.01 29.8 20.5 51 101-167 148-200 (568)
183 COG3823 Glutamine cyclotransfe 48.2 1.3E+02 0.0028 29.5 8.8 101 183-315 49-149 (262)
184 COG3823 Glutamine cyclotransfe 47.5 2.9E+02 0.0062 27.2 13.6 104 81-219 55-160 (262)
185 KOG1036 Mitotic spindle checkp 47.3 3.4E+02 0.0074 28.0 14.1 102 81-219 64-165 (323)
186 PF03066 Nucleoplasmin: Nucleo 46.6 6.5 0.00014 36.3 0.0 9 463-471 96-104 (149)
187 KOG1189 Global transcriptional 46.6 14 0.00031 42.1 2.6 7 465-471 803-809 (960)
188 KOG0289 mRNA splicing factor [ 46.2 3.2E+02 0.0069 29.7 12.1 59 210-290 412-472 (506)
189 KOG0266 WD40 repeat-containing 45.4 4.5E+02 0.0097 28.8 16.2 95 156-284 225-322 (456)
190 PTZ00420 coronin; Provisional 43.9 5.4E+02 0.012 29.3 21.3 49 157-220 149-200 (568)
191 KOG3064 RNA-binding nuclear pr 41.5 11 0.00024 37.4 0.7 8 305-312 56-63 (303)
192 KOG0286 G-protein beta subunit 41.4 4.2E+02 0.0091 27.3 19.4 38 274-314 253-292 (343)
193 KOG3241 Uncharacterized conser 40.8 20 0.00043 33.5 2.2 8 450-457 164-171 (227)
194 smart00284 OLF Olfactomedin-li 39.4 4.2E+02 0.0091 26.8 16.9 157 65-251 70-241 (255)
195 PF03344 Daxx: Daxx Family; I 39.4 9.9 0.00021 44.0 0.0 14 574-587 509-522 (713)
196 PF03115 Astro_capsid: Astrovi 39.1 10 0.00022 44.3 0.0 14 328-341 533-546 (787)
197 PF13088 BNR_2: BNR repeat-lik 38.7 4E+02 0.0087 26.4 21.7 204 81-311 58-275 (275)
198 KOG1036 Mitotic spindle checkp 38.2 4.7E+02 0.01 27.0 13.0 130 157-342 36-166 (323)
199 TIGR02658 TTQ_MADH_Hv methylam 37.4 5.3E+02 0.011 27.4 25.4 122 82-223 13-142 (352)
200 PF15525 DUF4652: Domain of un 37.4 3.8E+02 0.0083 25.7 10.5 71 153-227 85-158 (200)
201 KOG0318 WD40 repeat stress pro 36.0 3.9E+02 0.0085 29.7 11.2 55 189-257 454-510 (603)
202 PTZ00007 (NAP-L) nucleosome as 33.9 33 0.00072 36.0 2.8 6 499-504 267-272 (337)
203 KOG2141 Protein involved in hi 33.1 25 0.00054 40.0 1.9 6 483-488 172-177 (822)
204 PF13570 PQQ_3: PQQ-like domai 32.0 1E+02 0.0022 20.9 4.3 26 300-340 15-40 (40)
205 KOG1523 Actin-related protein 31.9 3.8E+02 0.0083 27.9 9.8 103 100-227 31-142 (361)
206 COG3386 Gluconolactonase [Carb 31.6 6.1E+02 0.013 26.3 23.6 104 101-225 47-158 (307)
207 PF12217 End_beta_propel: Cata 31.5 5.7E+02 0.012 26.0 15.3 119 68-197 135-257 (367)
208 COG0823 TolB Periplasmic compo 31.2 7.2E+02 0.016 27.1 16.2 106 155-289 261-368 (425)
209 KOG0526 Nucleosome-binding fac 30.9 30 0.00066 38.0 2.0 33 107-145 47-79 (615)
210 COG5129 MAK16 Nuclear protein 30.8 21 0.00045 34.6 0.7 7 582-588 288-294 (303)
211 COG5177 Uncharacterized conser 30.3 52 0.0011 36.0 3.5 40 478-518 359-403 (769)
212 KOG0305 Anaphase promoting com 30.0 8.1E+02 0.017 27.3 14.8 172 101-342 197-379 (484)
213 COG5406 Nucleosome binding fac 30.0 35 0.00075 38.3 2.3 30 81-111 270-299 (1001)
214 KOG0306 WD40-repeat-containing 29.7 9.7E+02 0.021 28.1 19.3 56 126-200 414-476 (888)
215 PF05178 Kri1: KRI1-like famil 29.6 41 0.00088 28.8 2.2 25 569-593 17-41 (101)
216 KOG1517 Guanine nucleotide bin 29.5 1.1E+03 0.025 28.8 15.8 87 209-317 1279-1372(1387)
217 KOG4649 PQQ (pyrrolo-quinoline 29.1 6.3E+02 0.014 25.7 11.0 103 185-340 16-124 (354)
218 KOG2315 Predicted translation 28.5 7.8E+02 0.017 27.6 12.0 90 155-281 250-345 (566)
219 KOG2076 RNA polymerase III tra 28.4 27 0.00058 40.8 1.2 12 560-571 106-117 (895)
220 PTZ00415 transmission-blocking 28.2 33 0.00072 42.8 1.9 11 466-476 115-125 (2849)
221 KOG0526 Nucleosome-binding fac 26.9 41 0.00089 37.0 2.1 13 461-473 400-412 (615)
222 KOG0263 Transcription initiati 26.5 8.5E+02 0.018 28.3 12.3 12 305-316 629-640 (707)
223 KOG4378 Nuclear protein COP1 [ 25.4 8E+02 0.017 27.3 11.2 62 178-257 209-273 (673)
224 KOG3881 Uncharacterized conser 24.5 8E+02 0.017 26.3 10.8 96 154-281 224-321 (412)
225 KOG0281 Beta-TrCP (transducin 24.2 2.7E+02 0.0058 29.3 7.2 81 157-257 341-421 (499)
226 KOG1834 Calsyntenin [Extracell 24.2 42 0.0009 37.8 1.6 14 123-136 399-412 (952)
227 PF05285 SDA1: SDA1; InterPro 24.1 67 0.0015 33.7 3.1 6 468-473 64-69 (324)
228 KOG1446 Histone H3 (Lys4) meth 23.9 8.3E+02 0.018 25.3 17.0 78 216-341 185-264 (311)
229 KOG0127 Nucleolar protein fibr 23.3 37 0.00081 37.4 1.0 14 486-502 192-205 (678)
230 TIGR00993 3a0901s04IAP86 chlor 23.0 79 0.0017 36.5 3.5 13 574-586 444-456 (763)
231 PF04921 XAP5: XAP5, circadian 22.9 1.2E+02 0.0026 30.2 4.4 34 556-589 55-94 (239)
232 PF03344 Daxx: Daxx Family; I 22.7 28 0.00061 40.4 0.0 7 309-315 345-351 (713)
233 PTZ00415 transmission-blocking 22.7 69 0.0015 40.3 3.0 10 306-315 71-80 (2849)
234 COG0823 TolB Periplasmic compo 22.1 9.8E+02 0.021 26.1 11.7 107 208-348 261-368 (425)
235 PF09910 DUF2139: Uncharacteri 21.7 9.2E+02 0.02 25.1 20.8 102 99-221 76-185 (339)
236 KOG3637 Vitronectin receptor, 21.5 1.5E+03 0.032 28.0 13.9 102 155-257 295-426 (1030)
237 PF07820 TraC: TraC-like prote 21.4 72 0.0016 26.7 2.1 17 573-589 2-18 (92)
238 COG5406 Nucleosome binding fac 21.4 54 0.0012 36.8 1.8 7 465-471 855-861 (1001)
239 KOG0306 WD40-repeat-containing 21.2 1.4E+03 0.03 26.9 19.5 60 134-218 383-443 (888)
240 KOG3881 Uncharacterized conser 21.0 1E+03 0.023 25.5 11.7 158 135-341 161-322 (412)
241 COG5184 ATS1 Alpha-tubulin sup 20.3 1E+03 0.022 26.3 10.9 37 105-141 90-129 (476)
242 KOG0318 WD40 repeat stress pro 20.1 1.2E+03 0.027 26.0 14.2 142 125-316 443-593 (603)
No 1
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=5.3e-81 Score=624.80 Aligned_cols=480 Identities=46% Similarity=0.776 Sum_probs=391.8
Q ss_pred CCCCCCCCCCCc--hhhHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhhceeeEEeeccCCCCCCCcceEEEEec
Q 007468 1 MGKKNKKAGKGK--EKTERKTAKAEEKRARRETKKISPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCSLNINP 78 (602)
Q Consensus 1 m~k~~~~~~~~~--~k~~~k~~~~~~k~~~~~~~~~~~eedi~~~l~~~~~~e~~~~~~~~~~~~~~P~~R~~~s~~~~~ 78 (602)
||||+||++|+| +|+++|+++|. +||. ++++++.|+..|...|+..+++..+.+....+++|+||.++++++.|
T Consensus 1 MgKK~Kk~kkgk~aek~a~K~dkK~---akr~-kkl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nP 76 (521)
T KOG1230|consen 1 MGKKNKKDKKGKGAEKTAAKQDKKF---AKRK-KKLNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANP 76 (521)
T ss_pred CCccccCcccccchhhhHHHHHHHH---Hhhh-hhcCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeecc
Confidence 999988766665 55555555444 4444 66788888888888999999988788888999999999999999999
Q ss_pred CCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEEC-CEEEEEeCccCCCCCCcceecCe
Q 007468 79 LKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 79 ~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~-~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
.+ +.||+|||.+++++.+.++|++|.||+.+++|+++.+++.|+||++|++|++. +.+|||||.+.++++.+|+++.|
T Consensus 77 ek-eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD 155 (521)
T KOG1230|consen 77 EK-EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKD 155 (521)
T ss_pred Cc-ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhh
Confidence 87 59999999999999999999999999999999999999999999999999996 89999999999999999999999
Q ss_pred EEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcc
Q 007468 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRS 237 (602)
Q Consensus 158 v~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~ 237 (602)
+|+||+.+++|+++...+.|+||++|.|+++.++|+||||++.+.+...|+|+||+||+.+.+|+.+.+. +..|.||+
T Consensus 156 ~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps--ga~PtpRS 233 (521)
T KOG1230|consen 156 LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS--GAGPTPRS 233 (521)
T ss_pred eeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC--CCCCCCCC
Confidence 9999999999999999889999999999999999999999999999999999999999999999999995 56899999
Q ss_pred ceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC-----CeeEEeecCCCCCCCCceeEEEEE-CCeEE
Q 007468 238 GFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-----WEWSKVKKIGMPPGPRAGFSMCVH-KKRAL 310 (602)
Q Consensus 238 ~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-----~~W~~l~~~g~~P~~R~~~s~~~~-~~~ly 310 (602)
||++++. ++.|||+|||+.. ........+..++|+|.+++.+ +.|+++.+.|..|.||+++++++. +++.|
T Consensus 234 Gcq~~vtpqg~i~vyGGYsK~--~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal 311 (521)
T KOG1230|consen 234 GCQFSVTPQGGIVVYGGYSKQ--RVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKAL 311 (521)
T ss_pred cceEEecCCCcEEEEcchhHh--hhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceE
Confidence 9999999 9999999999988 5777888999999999999988 899999999999999999999998 56999
Q ss_pred EeccccccccccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccch
Q 007468 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDE 390 (602)
Q Consensus 311 v~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (602)
+|||+.+.+....++.+.|+||+|.||++.++|+..++.+..+.... +|+.+..... .+. .-..+++..|-
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~-~r~~~Kd~~k-~~~-------~~~~G~~tkd~ 382 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATS-RRRSRKDQEK-ELQ-------RPTVGPNTKDL 382 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCCccc-cccccccccc-ccc-------CcccCCCcccc
Confidence 99999998888999999999999999999999999988777766544 2222211110 000 00011111110
Q ss_pred hhhhhhhhhhcccccccccccCCCceeeccCcee-e---ecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeE
Q 007468 391 NAEYYEEADEMESNIDNLSECVPNSVIVDDGVLA-A---KSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTL 466 (602)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~l 466 (602)
++. ...+.....-|+.++ + ....+..+.++......+...+.--|+||+++.+++..+.|
T Consensus 383 e~~----------------~v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~ 446 (521)
T KOG1230|consen 383 EVQ----------------AVDKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFPRMDDELSVKVGVL 446 (521)
T ss_pred cce----------------ecceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCccCCCccCcccceE
Confidence 100 001111111112222 1 11122222222222223333333369999999999999999
Q ss_pred EEEeceEEecCeeeeecchhhcccCCCCccEEeecCChh--hhhhccCCC
Q 007468 467 YVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPASES--EWVEASEGE 514 (602)
Q Consensus 467 yv~GG~~e~g~~~~~l~Dl~~ldl~~~~~W~~~~~~~~~--~w~~~~~~~ 514 (602)
||+||+++-+|++.||+|||+|+||++.+||+|.+++.. ||++..+++
T Consensus 447 ~i~gGi~ee~d~q~tl~dfyal~~hr~~~~K~L~~~sfe~~E~re~~ds~ 496 (521)
T KOG1230|consen 447 YIGGGIFEERDWQPTLRDFYALDLHRNEKGKQLKTKSFELCEWRERRDSE 496 (521)
T ss_pred EecCCCcccccccchHHHHhhhhhhhhhhhhhhccCCchhhhhhhhhhhh
Confidence 999999999999999999999999998899999999884 899766553
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8e-44 Score=375.48 Aligned_cols=279 Identities=23% Similarity=0.414 Sum_probs=216.0
Q ss_pred ceeeEEeeccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC-CCCC-ceeeEE
Q 007468 53 KKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPP-RSAHQA 130 (602)
Q Consensus 53 ~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~-~P~~-R~~hs~ 130 (602)
.|..+.. .....|.||.+|+++++ +++||||||.... .....+++|+||+.+++|..++++. .|.. +.+|++
T Consensus 8 ~W~~~~~-~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~ 81 (341)
T PLN02153 8 GWIKVEQ-KGGKGPGPRCSHGIAVV---GDKLYSFGGELKP--NEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRM 81 (341)
T ss_pred eEEEecC-CCCCCCCCCCcceEEEE---CCEEEEECCccCC--CCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEE
Confidence 3443332 23347899999999999 8999999996322 2235689999999999999887653 3332 458999
Q ss_pred EEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccC---CCCCCCcccEEEEECCEEEEEcCccCCCC--Ce
Q 007468 131 VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK---GCPSPRSGHRMVLYKHKIIVFGGFYDTLR--EV 205 (602)
Q Consensus 131 ~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~---~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~--~~ 205 (602)
++++++||||||.... ..++++++||+.+++|+.+++. ..|.+|.+|++++++++||||||+..... ..
T Consensus 82 ~~~~~~iyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 82 VAVGTKLYIFGGRDEK------REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EEECCEEEEECCCCCC------CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 9999999999998543 2468999999999999998752 12889999999999999999999864321 11
Q ss_pred eeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeE
Q 007468 206 RYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWS 285 (602)
Q Consensus 206 ~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 285 (602)
..++++++||+.+++|+.++.+ +..|.+|.+|++++++++|||+||..... .. ........+++++||+.+++|+
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~--~~-gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDP--GENFEKRGGAGFAVVQGKIWVVYGFATSI--LP-GGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred cccceEEEEECCCCeEeeCCCC--CCCCCCCCcceEEEECCeEEEEecccccc--cc-CCccceecCceEEEEcCCCcEE
Confidence 2468999999999999999876 33468999999999999999999975320 00 0001123678999999999999
Q ss_pred EeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 286 KVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 286 ~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
++...+.+|.+|..|++++++++||||||...............+++||+||+.+++|+.+..
T Consensus 231 ~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 231 EVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred eccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 999888789999999999999999999997532211111124567899999999999998764
No 3
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.5e-43 Score=387.72 Aligned_cols=259 Identities=25% Similarity=0.448 Sum_probs=214.9
Q ss_pred ccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCC-CCCC-CceeeEEEEECCEEE
Q 007468 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSP-NSPP-PRSAHQAVSWKNYLY 138 (602)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~-~~P~-~R~~hs~~~~~~~iy 138 (602)
....+|.||.+|+++++ ++.||||||.... .....+++|+||+.+++|..++.+ ..|. +|.+|++++++++||
T Consensus 158 ~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~--~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY 232 (470)
T PLN02193 158 QKGEGPGLRCSHGIAQV---GNKIYSFGGEFTP--NQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY 232 (470)
T ss_pred cCCCCCCCccccEEEEE---CCEEEEECCcCCC--CCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE
Confidence 34457899999999999 8999999996322 222568899999999999987654 2344 467999999999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC-CCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 139 V~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~-~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
||||.... ..++++|+||+.+++|+++++.+ .|.+|++|++++++++||||||+.... .++++++||+.
T Consensus 233 vfGG~~~~------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~----~~~~~~~yd~~ 302 (470)
T PLN02193 233 VFGGRDAS------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA----RLKTLDSYNIV 302 (470)
T ss_pred EECCCCCC------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC----CcceEEEEECC
Confidence 99998643 24789999999999999997732 288999999999999999999986532 47899999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCC
Q 007468 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (602)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 297 (602)
+++|+.+++. +..|.+|.+|++++++++|||+||..+. .++++++||+.+++|+++..++.+|.+|
T Consensus 303 t~~W~~~~~~--~~~~~~R~~~~~~~~~gkiyviGG~~g~------------~~~dv~~yD~~t~~W~~~~~~g~~P~~R 368 (470)
T PLN02193 303 DKKWFHCSTP--GDSFSIRGGAGLEVVQGKVWVVYGFNGC------------EVDDVHYYDPVQDKWTQVETFGVRPSER 368 (470)
T ss_pred CCEEEeCCCC--CCCCCCCCCcEEEEECCcEEEEECCCCC------------ccCceEEEECCCCEEEEeccCCCCCCCc
Confidence 9999998764 3457899999999999999999998543 3688999999999999999888889999
Q ss_pred ceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 298 ~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
..|++++++++||||||..............+++++|+||+.+++|+.+..
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 999999999999999998653322222224567899999999999998875
No 4
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=9.1e-42 Score=325.46 Aligned_cols=262 Identities=23% Similarity=0.441 Sum_probs=223.4
Q ss_pred CCCcceEEEEecCCCCEEEEEcceecCCC-CceeeCcEEEEEcCCCcEEEecCC-----------CCCCCceeeEEEEEC
Q 007468 67 SPRSNCSLNINPLKETELILYGGEFYNGN-KTYVYGDLYRYDVEKQEWKVISSP-----------NSPPPRSAHQAVSWK 134 (602)
Q Consensus 67 ~~R~~~s~~~~~~~~~~iyv~GG~~~~g~-~~~~~~dv~~yd~~~~~W~~l~~~-----------~~P~~R~~hs~~~~~ 134 (602)
+.|.+|+++.+ +.+||-|||...... ...---||.++|..+-.|.+++++ ..|-.|++|+.+.+.
T Consensus 12 PrRVNHAavaV---G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~ 88 (392)
T KOG4693|consen 12 PRRVNHAAVAV---GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ 88 (392)
T ss_pred cccccceeeee---cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc
Confidence 46899999999 899999999742211 111224799999999999988762 246679999999999
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCC-CCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEE
Q 007468 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (602)
Q Consensus 135 ~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~-p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~ 213 (602)
+++||.||.+.... ..|-++.||++++.|.+....+. |.+|-+|++|++++.+|||||+.... .++.++++.
T Consensus 89 d~~yvWGGRND~eg-----aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a--~~FS~d~h~ 161 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEG-----ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA--QRFSQDTHV 161 (392)
T ss_pred ceEEEEcCccCccc-----ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH--Hhhhcccee
Confidence 99999999987644 36889999999999999888765 99999999999999999999997653 458899999
Q ss_pred EECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCC
Q 007468 214 FDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (602)
Q Consensus 214 yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 293 (602)
||+.|-+|+.+.+. +..|.-|-.|+++++++.+|||||..... ...........+.+..||+.|..|++.+..+..
T Consensus 162 ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~~--gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 162 LDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDES--GPFHSIHEQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred Eeccceeeeehhcc--CCCchhhhhhhhhhccceEEEeccccccC--CCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence 99999999999888 66788899999999999999999998762 223334456778899999999999999988889
Q ss_pred CCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEec
Q 007468 294 PGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (602)
Q Consensus 294 P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~ 349 (602)
|..|..|++.+++++||+|||+++. ....+||+|+|||.+..|+.+..+
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~-------ln~HfndLy~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGT-------LNVHFNDLYCFDPKTSMWSVISVR 286 (392)
T ss_pred CCcccccceEEEcceEEEecccchh-------hhhhhcceeecccccchheeeecc
Confidence 9999999999999999999999874 356799999999999999999883
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.2e-41 Score=371.48 Aligned_cols=284 Identities=21% Similarity=0.366 Sum_probs=250.3
Q ss_pred CCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCcc
Q 007468 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEF 144 (602)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~ 144 (602)
.+.+|..... .. .+.||++||... .....+.+.+|||.++.|..++. +|.+|..++++++++.|||+||++
T Consensus 272 ~~~~~t~~r~-~~---~~~l~~vGG~~~---~~~~~~~ve~yd~~~~~w~~~a~--m~~~r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 272 MQSPRTRPRR-SV---SGKLVAVGGYNR---QGQSLRSVECYDPKTNEWSSLAP--MPSPRCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred ccCCCcccCc-CC---CCeEEEECCCCC---CCcccceeEEecCCcCcEeecCC--CCcccccccEEEECCEEEEEcccc
Confidence 5666665543 22 588999999732 23478899999999999999988 558999999999999999999998
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEe
Q 007468 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (602)
Q Consensus 145 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v 224 (602)
.. ...++.+|+||+.+++|..+++ |+.+|.+|+++++++.||++||+++. ..++++++||+.+++|+.+
T Consensus 343 ~~-----~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v~~l~g~iYavGG~dg~----~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 343 SG-----SDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGVAVLDGKLYAVGGFDGE----KSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CC-----CcccceEEEecCCCCceeccCC--ccCccccceeEEECCEEEEEeccccc----cccccEEEecCCCCccccc
Confidence 41 2368999999999999999988 99999999999999999999999853 3689999999999999999
Q ss_pred ccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEE
Q 007468 225 KPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (602)
Q Consensus 225 ~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~ 304 (602)
+++ +.+|++|++++++++||++||.++. ...++.+.+|||.+++|+.+++| +.+|.+|++++
T Consensus 412 a~m-----~~~r~~~gv~~~~g~iYi~GG~~~~----------~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~ 473 (571)
T KOG4441|consen 412 APM-----LTRRSGHGVAVLGGKLYIIGGGDGS----------SNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV 473 (571)
T ss_pred CCC-----CcceeeeEEEEECCEEEEEcCcCCC----------ccccceEEEEcCCCCceeecCCc---ccccccceEEE
Confidence 999 7799999999999999999999877 23889999999999999999998 78999999999
Q ss_pred ECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcc
Q 007468 305 HKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFD 384 (602)
Q Consensus 305 ~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (602)
++++||++||+++. ..+..|++|||.+++|+.+.+
T Consensus 474 ~~~~iYvvGG~~~~---------~~~~~VE~ydp~~~~W~~v~~------------------------------------ 508 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGT---------SALSSVERYDPETNQWTMVAP------------------------------------ 508 (571)
T ss_pred ECCEEEEECCccCC---------CccceEEEEcCCCCceeEccc------------------------------------
Confidence 99999999999862 346679999999999999876
Q ss_pred cCccchhhhhhhhhhhcccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecC
Q 007468 385 ANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD 464 (602)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~ 464 (602)
|+.+|+++++++.++
T Consensus 509 -----------------------------------------------------------------m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 509 -----------------------------------------------------------------MTSPRSAVGVVVLGG 523 (571)
T ss_pred -----------------------------------------------------------------CccccccccEEEECC
Confidence 789999999999999
Q ss_pred eEEEEeceEEecCeeeeecchhhcccCCCCccEEeec
Q 007468 465 TLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIP 501 (602)
Q Consensus 465 ~lyv~GG~~e~g~~~~~l~Dl~~ldl~~~~~W~~~~~ 501 (602)
+|||.||... .-.|+.+-+||..+ |+|+.+.+
T Consensus 524 ~ly~vGG~~~----~~~l~~ve~ydp~~-d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFDG----NNNLNTVECYDPET-DTWTEVTE 555 (571)
T ss_pred EEEEEecccC----ccccceeEEcCCCC-CceeeCCC
Confidence 9999999543 34788888899999 99999988
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.5e-39 Score=356.01 Aligned_cols=300 Identities=22% Similarity=0.382 Sum_probs=239.8
Q ss_pred CCCCC-cceEEEEecCCCCEEEEEcceecCCCCceeeCcE--EEEEcCC----CcEEEecCC-CCCCCceeeEEEEECCE
Q 007468 65 APSPR-SNCSLNINPLKETELILYGGEFYNGNKTYVYGDL--YRYDVEK----QEWKVISSP-NSPPPRSAHQAVSWKNY 136 (602)
Q Consensus 65 ~P~~R-~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv--~~yd~~~----~~W~~l~~~-~~P~~R~~hs~~~~~~~ 136 (602)
.|... .+..+++. +++|+.|+|.. +. .++.+ |.+++.+ ++|..++++ ..|.||++|+++++++.
T Consensus 106 ~~~g~~~g~~f~~~---~~~ivgf~G~~--~~---~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 106 HPIEKRPGVKFVLQ---GGKIVGFHGRS--TD---VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNK 177 (470)
T ss_pred cccccCCCCEEEEc---CCeEEEEeccC--CC---cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCE
Confidence 44443 34445443 89999999962 11 34444 4446655 899998764 35889999999999999
Q ss_pred EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC-CCC-CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEE
Q 007468 137 LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (602)
Q Consensus 137 iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~-~p~-~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~y 214 (602)
|||+||...... ...+++|+||+.+++|+.+++.+ .|. .|.+|++++++++||||||+... ..++++|+|
T Consensus 178 iyv~GG~~~~~~----~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~----~~~ndv~~y 249 (470)
T PLN02193 178 IYSFGGEFTPNQ----PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS----RQYNGFYSF 249 (470)
T ss_pred EEEECCcCCCCC----CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC----CCCccEEEE
Confidence 999999854221 14578999999999999887643 344 36789999999999999998653 257999999
Q ss_pred ECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCC
Q 007468 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPP 294 (602)
Q Consensus 215 d~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 294 (602)
|+.+++|+.++++ +..|.+|++|++++++++||||||+... ..++++++||+.+++|+.++..+.+|
T Consensus 250 D~~t~~W~~l~~~--~~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~~~~~~~yd~~t~~W~~~~~~~~~~ 316 (470)
T PLN02193 250 DTTTNEWKLLTPV--EEGPTPRSFHSMAADEENVYVFGGVSAT-----------ARLKTLDSYNIVDKKWFHCSTPGDSF 316 (470)
T ss_pred ECCCCEEEEcCcC--CCCCCCccceEEEEECCEEEEECCCCCC-----------CCcceEEEEECCCCEEEeCCCCCCCC
Confidence 9999999999877 3458899999999999999999998764 45678999999999999998766678
Q ss_pred CCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhc
Q 007468 295 GPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEK 374 (602)
Q Consensus 295 ~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (602)
.+|.+|++++++++|||+||... ..+++|++||+.+++|+.++..+
T Consensus 317 ~~R~~~~~~~~~gkiyviGG~~g----------~~~~dv~~yD~~t~~W~~~~~~g------------------------ 362 (470)
T PLN02193 317 SIRGGAGLEVVQGKVWVVYGFNG----------CEVDDVHYYDPVQDKWTQVETFG------------------------ 362 (470)
T ss_pred CCCCCcEEEEECCcEEEEECCCC----------CccCceEEEECCCCEEEEeccCC------------------------
Confidence 89999999999999999999753 23689999999999999887621
Q ss_pred cCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccC
Q 007468 375 LNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGR 454 (602)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R 454 (602)
..|.||
T Consensus 363 --------------------------------------------------------------------------~~P~~R 368 (470)
T PLN02193 363 --------------------------------------------------------------------------VRPSER 368 (470)
T ss_pred --------------------------------------------------------------------------CCCCCc
Confidence 048999
Q ss_pred cccceeeecCeEEEEeceEEecC-----eeeeecchhhcccCCCCccEEeecC
Q 007468 455 INSCMVVGKDTLYVYGGMMEIND-----QEITLDDLYSLNLSKLDEWKCIIPA 502 (602)
Q Consensus 455 ~~~~~~v~~~~lyv~GG~~e~g~-----~~~~l~Dl~~ldl~~~~~W~~~~~~ 502 (602)
..|++++++++||||||...... ....++|+|+||+.+ ++|+.+..+
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t-~~W~~~~~~ 420 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET-LQWERLDKF 420 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc-CEEEEcccC
Confidence 99999999999999999853110 123578999999999 999988643
No 7
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=327.63 Aligned_cols=269 Identities=28% Similarity=0.589 Sum_probs=229.3
Q ss_pred CCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEEC-CEEEEEcC
Q 007468 121 SPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGG 197 (602)
Q Consensus 121 ~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~-~~Lyv~GG 197 (602)
+|.||.+.++++. .+.|++|||....... .+.++++|+||+.+++|..+..+..|.||++|.+|++. +.||||||
T Consensus 63 ~PspRsn~sl~~nPekeELilfGGEf~ngqk--T~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 63 PPSPRSNPSLFANPEKEELILFGGEFYNGQK--THVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCcceeeccCcceeEEecceeeccee--EEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 5789999998887 4689999998765433 57899999999999999999887779999999999995 89999999
Q ss_pred ccCCCCCee--eeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEE
Q 007468 198 FYDTLREVR--YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (602)
Q Consensus 198 ~~~~~~~~~--~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (602)
-..+....+ .+.++|.||+.+++|++|.... .|.||+||-|+++..+|+||||+... +....++||||
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g---~PS~RSGHRMvawK~~lilFGGFhd~-------nr~y~YyNDvy 210 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG---GPSPRSGHRMVAWKRQLILFGGFHDS-------NRDYIYYNDVY 210 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC---CCCCCccceeEEeeeeEEEEcceecC-------CCceEEeeeeE
Confidence 766544333 5789999999999999998863 49999999999999999999998765 34567899999
Q ss_pred EEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCC-----CceEEeEec
Q 007468 276 SLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN-----HRWYPLELR 349 (602)
Q Consensus 276 ~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t-----~~W~~l~~~ 349 (602)
+||+.+.+|+++.+.|.-|.||++|++++. .+.|||+||++......+...+...+|+|.+++++ ..|.++.+.
T Consensus 211 ~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~ 290 (521)
T KOG1230|consen 211 AFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS 290 (521)
T ss_pred EEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC
Confidence 999999999999999989999999999999 99999999998877777777889999999999998 678877762
Q ss_pred CCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeeccCceeeecCC
Q 007468 350 KEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGG 429 (602)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (602)
+
T Consensus 291 g------------------------------------------------------------------------------- 291 (521)
T KOG1230|consen 291 G------------------------------------------------------------------------------- 291 (521)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCCCccccccccccCCCCCcCCccCcccceeeecC-eEEEEeceEEec-Ce----eeeecchhhcccCCCCccEEee
Q 007468 430 KPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKD-TLYVYGGMMEIN-DQ----EITLDDLYSLNLSKLDEWKCII 500 (602)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~-~lyv~GG~~e~g-~~----~~~l~Dl~~ldl~~~~~W~~~~ 500 (602)
+.|.||++.++++..+ +-|.|||++..- +. ..-+||||.|||.. +.|....
T Consensus 292 -------------------~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~-nrW~~~q 348 (521)
T KOG1230|consen 292 -------------------VKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTR-NRWSEGQ 348 (521)
T ss_pred -------------------CCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheeccc-chhhHhh
Confidence 2599999999977555 999999987521 11 14589999999988 9997663
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.2e-38 Score=334.16 Aligned_cols=281 Identities=21% Similarity=0.334 Sum_probs=220.0
Q ss_pred cCCCcEEEecCC--CCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC-CCCC-Cccc
Q 007468 108 VEKQEWKVISSP--NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSP-RSGH 183 (602)
Q Consensus 108 ~~~~~W~~l~~~--~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~-~p~~-R~~h 183 (602)
+....|..+... ..|.||.+|+++++++.|||+||...... ...+++|+||+.+++|+.+++.+ .|.. +.+|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNE----HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCC----ceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 356789999764 26889999999999999999999854321 24689999999999999987743 2332 3478
Q ss_pred EEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccC
Q 007468 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN 263 (602)
Q Consensus 184 ~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~ 263 (602)
++++++++||||||..... .++++++||+.+++|+.++++.....|.+|.+|++++++++||||||+.... .
T Consensus 80 ~~~~~~~~iyv~GG~~~~~----~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~--~-- 151 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKR----EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG--L-- 151 (341)
T ss_pred EEEEECCEEEEECCCCCCC----ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC--c--
Confidence 9999999999999986532 4789999999999999998764334488999999999999999999986430 0
Q ss_pred CCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCce
Q 007468 264 QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW 343 (602)
Q Consensus 264 ~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W 343 (602)
......++++++||+.+++|+.++.++.+|.+|.+|++++++++|||+||.......+.. ....+++|++||+.+++|
T Consensus 152 -~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~-~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 152 -MKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGK-SDYESNAVQFFDPASGKW 229 (341)
T ss_pred -cCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCc-cceecCceEEEEcCCCcE
Confidence 001124578999999999999999887778899999999999999999997532100000 012368999999999999
Q ss_pred EEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeeccCce
Q 007468 344 YPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVL 423 (602)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (602)
+.+...+
T Consensus 230 ~~~~~~g------------------------------------------------------------------------- 236 (341)
T PLN02153 230 TEVETTG------------------------------------------------------------------------- 236 (341)
T ss_pred EeccccC-------------------------------------------------------------------------
Confidence 9887511
Q ss_pred eeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEec-----CeeeeecchhhcccCCCCccEE
Q 007468 424 AAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEIN-----DQEITLDDLYSLNLSKLDEWKC 498 (602)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g-----~~~~~l~Dl~~ldl~~~~~W~~ 498 (602)
.+|.+|..|++++++++||||||..... .....++|+|+||+.+ ++|+.
T Consensus 237 -------------------------~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~-~~W~~ 290 (341)
T PLN02153 237 -------------------------AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET-LVWEK 290 (341)
T ss_pred -------------------------CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc-cEEEe
Confidence 0599999999999999999999974210 1234578999999998 99999
Q ss_pred eec
Q 007468 499 IIP 501 (602)
Q Consensus 499 ~~~ 501 (602)
+..
T Consensus 291 ~~~ 293 (341)
T PLN02153 291 LGE 293 (341)
T ss_pred ccC
Confidence 863
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=9e-39 Score=355.91 Aligned_cols=266 Identities=13% Similarity=0.209 Sum_probs=223.0
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R 180 (602)
..+++||+.+++|..+++ +|.+|..|+++++++.|||+||..... ..++.+++||+.+++|..+++ ||.+|
T Consensus 272 ~~v~~yd~~~~~W~~l~~--mp~~r~~~~~a~l~~~IYviGG~~~~~-----~~~~~v~~Yd~~~n~W~~~~~--m~~~R 342 (557)
T PHA02713 272 PCILVYNINTMEYSVIST--IPNHIINYASAIVDNEIIIAGGYNFNN-----PSLNKVYKINIENKIHVELPP--MIKNR 342 (557)
T ss_pred CCEEEEeCCCCeEEECCC--CCccccceEEEEECCEEEEEcCCCCCC-----CccceEEEEECCCCeEeeCCC--Ccchh
Confidence 578999999999999987 568899999999999999999974321 246889999999999999988 89999
Q ss_pred cccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCC
Q 007468 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (602)
Q Consensus 181 ~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~ 260 (602)
++|++++++++||++||..+. ..++++++||+.+++|+.++++ |.+|.++++++++++|||+||.......
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~----~~~~sve~Ydp~~~~W~~~~~m-----p~~r~~~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGT----NVERTIECYTMGDDKWKMLPDM-----PIALSSYGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred hceeEEEECCEEEEECCcCCC----CCCceEEEEECCCCeEEECCCC-----CcccccccEEEECCEEEEEeCCCccccc
Confidence 999999999999999998643 2478999999999999999988 8999999999999999999998643000
Q ss_pred -cc------CCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCee
Q 007468 261 -DK------NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNEL 333 (602)
Q Consensus 261 -~~------~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv 333 (602)
.. ........++.+++|||.+++|+.++++ |.+|..+++++++++|||+||..+.. ...+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~~--------~~~~~v 482 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDEK--------NVKTCI 482 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCCC--------ccceeE
Confidence 00 0000012367899999999999999876 78999999999999999999986421 223568
Q ss_pred EEEECCC-CceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccC
Q 007468 334 YGFQLDN-HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECV 412 (602)
Q Consensus 334 ~~yd~~t-~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (602)
++|||.+ ++|+.+++
T Consensus 483 e~Ydp~~~~~W~~~~~---------------------------------------------------------------- 498 (557)
T PHA02713 483 FRYNTNTYNGWELITT---------------------------------------------------------------- 498 (557)
T ss_pred EEecCCCCCCeeEccc----------------------------------------------------------------
Confidence 9999999 89998877
Q ss_pred CCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecCeeeeecchhhcccCC
Q 007468 413 PNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (602)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~~l~Dl~~ldl~~ 492 (602)
+|.+|..+++++++++|||+||... ...+.+||+.+
T Consensus 499 -------------------------------------m~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~ 534 (557)
T PHA02713 499 -------------------------------------TESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYT 534 (557)
T ss_pred -------------------------------------cCcccccceeEEECCEEEEEeeecc-------eeehhhcCccc
Confidence 8999999999999999999999863 23678999999
Q ss_pred CCccEEeecCCh
Q 007468 493 LDEWKCIIPASE 504 (602)
Q Consensus 493 ~~~W~~~~~~~~ 504 (602)
++|+.+.|.-.
T Consensus 535 -~~W~~~~~~~~ 545 (557)
T PHA02713 535 -YEWNHICHQHS 545 (557)
T ss_pred -ccccchhhhcC
Confidence 99999987643
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=4.9e-38 Score=329.06 Aligned_cols=249 Identities=19% Similarity=0.291 Sum_probs=192.5
Q ss_pred CCCcceEEEEecCCCCEEEEEcceecC------CCCceeeCcEEEEE-cCC-CcEEEecCCCCCCCceeeEEEEECCEEE
Q 007468 67 SPRSNCSLNINPLKETELILYGGEFYN------GNKTYVYGDLYRYD-VEK-QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (602)
Q Consensus 67 ~~R~~~s~~~~~~~~~~iyv~GG~~~~------g~~~~~~~dv~~yd-~~~-~~W~~l~~~~~P~~R~~hs~~~~~~~iy 138 (602)
..+.++.++++ ++.|||+||.... +.....++++|+|+ +.. .+|..+++ +|.+|..|+++++++.||
T Consensus 2 ~~~~g~~~~~~---~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~--lp~~r~~~~~~~~~~~ly 76 (323)
T TIGR03548 2 LGVAGCYAGII---GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ--LPYEAAYGASVSVENGIY 76 (323)
T ss_pred CceeeEeeeEE---CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc--CCccccceEEEEECCEEE
Confidence 45678888888 8999999998543 22346788999996 332 37998876 568898888899999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcE----EEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEE
Q 007468 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQW----EQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (602)
Q Consensus 139 V~GG~~~~~~~~~~~~~~dv~~yd~~t~~W----~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~y 214 (602)
|+||.... ..++++|+||+.+++| ..+++ +|.+|.+|++++++++|||+||.... ..++++++|
T Consensus 77 viGG~~~~------~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~~~iYv~GG~~~~----~~~~~v~~y 144 (323)
T TIGR03548 77 YIGGSNSS------ERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKDGTLYVGGGNRNG----KPSNKSYLF 144 (323)
T ss_pred EEcCCCCC------CCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEECCEEEEEeCcCCC----ccCceEEEE
Confidence 99998643 2468999999999998 56665 79999999999999999999997532 247899999
Q ss_pred ECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCC--
Q 007468 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGM-- 292 (602)
Q Consensus 215 d~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~-- 292 (602)
|+.+++|+.+++++ ..+|.+|++++++++|||+||.... ...++++||+.+++|+.++++..
T Consensus 145 d~~~~~W~~~~~~p----~~~r~~~~~~~~~~~iYv~GG~~~~------------~~~~~~~yd~~~~~W~~~~~~~~~~ 208 (323)
T TIGR03548 145 NLETQEWFELPDFP----GEPRVQPVCVKLQNELYVFGGGSNI------------AYTDGYKYSPKKNQWQKVADPTTDS 208 (323)
T ss_pred cCCCCCeeECCCCC----CCCCCcceEEEECCEEEEEcCCCCc------------cccceEEEecCCCeeEECCCCCCCC
Confidence 99999999998772 2479999999999999999998643 24568999999999999987643
Q ss_pred CCCCCceeEE-EEECCeEEEecccccccccc-----------------------ccccccccCeeEEEECCCCceEEeEe
Q 007468 293 PPGPRAGFSM-CVHKKRALLFGGVVDMEMKG-----------------------DVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 293 ~P~~R~~~s~-~~~~~~lyv~GG~~~~~~~~-----------------------~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.|.++.++++ ++.+++||||||.+...... ......+.+.|++||+.+++|+.++.
T Consensus 209 ~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 209 EPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred CceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 2444444444 44579999999986421000 00011235789999999999998875
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.2e-38 Score=331.42 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=191.8
Q ss_pred CCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEc--CCCcEEEecCCCCC-CCceeeEEEEECCEEEE
Q 007468 63 VPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDV--EKQEWKVISSPNSP-PPRSAHQAVSWKNYLYI 139 (602)
Q Consensus 63 ~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~--~~~~W~~l~~~~~P-~~R~~hs~~~~~~~iyV 139 (602)
+++|.+|..++++++ +++|||+||.. .+++|+||+ .+++|..+++ +| .+|..|+++++++.|||
T Consensus 2 ~~lp~~~~~~~~~~~---~~~vyv~GG~~--------~~~~~~~d~~~~~~~W~~l~~--~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 2 PDLPVGFKNGTGAII---GDKVYVGLGSA--------GTSWYKLDLKKPSKGWQKIAD--FPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCCccccCceEEEE---CCEEEEEcccc--------CCeeEEEECCCCCCCceECCC--CCCCCcccceEEEECCEEEE
Confidence 568899999888888 89999999951 257899996 6789999987 44 58999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEE-EECCEEEEEcCccCCCC---------------
Q 007468 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV-LYKHKIIVFGGFYDTLR--------------- 203 (602)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~-~~~~~Lyv~GG~~~~~~--------------- 203 (602)
+||............++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||||||+.....
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccch
Confidence 9998543211112357899999999999999974 257888888877 78999999999853200
Q ss_pred ---------------CeeeeceEEEEECCCCceEEeccCCCCCCCC-CccceeEEEeCCEEEEEcCccCCCCCccCCCCC
Q 007468 204 ---------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (602)
Q Consensus 204 ---------------~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~-~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (602)
...+++++++||+.+++|+.++++ |. +|++|++++++++|||+||....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~-----p~~~r~~~~~~~~~~~iyv~GG~~~~---------- 212 (346)
T TIGR03547 148 PKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN-----PFLGTAGSAIVHKGNKLLLINGEIKP---------- 212 (346)
T ss_pred hhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC-----CCCcCCCceEEEECCEEEEEeeeeCC----------
Confidence 001247899999999999999887 54 78999999999999999998543
Q ss_pred CceeeeEEEE--eCCCCeeEEeecCCCC----CCCCceeEEEEECCeEEEecccccccccc-----ccc-c--ccccCee
Q 007468 268 GIIHSDLWSL--DPRTWEWSKVKKIGMP----PGPRAGFSMCVHKKRALLFGGVVDMEMKG-----DVI-M--SLFLNEL 333 (602)
Q Consensus 268 ~~~~~dv~~y--d~~t~~W~~l~~~g~~----P~~R~~~s~~~~~~~lyv~GG~~~~~~~~-----~~~-~--~~~~ndv 333 (602)
.....++++| ++.+++|+.++++..+ +..|.+|++++++++|||+||.+...... ... . ...+..+
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSS 292 (346)
T ss_pred CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEe
Confidence 1223445555 4577899999887332 12235777888999999999986321100 000 0 0113468
Q ss_pred EEEECCCCceEEeEe
Q 007468 334 YGFQLDNHRWYPLEL 348 (602)
Q Consensus 334 ~~yd~~t~~W~~l~~ 348 (602)
++||+.+++|+.+..
T Consensus 293 e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 293 EVYALDNGKWSKVGK 307 (346)
T ss_pred eEEEecCCcccccCC
Confidence 999999999987765
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.5e-37 Score=328.89 Aligned_cols=309 Identities=19% Similarity=0.276 Sum_probs=231.0
Q ss_pred ceeeEEeeccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcC--CCcEEEecCCCCCCCceeeEE
Q 007468 53 KKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVE--KQEWKVISSPNSPPPRSAHQA 130 (602)
Q Consensus 53 ~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~--~~~W~~l~~~~~P~~R~~hs~ 130 (602)
....+.++..+++|.+|..++++++ +++|||+||. . .+.+|+||+. +++|..+++++ ..+|.+|++
T Consensus 13 ~~~~~~~~~l~~lP~~~~~~~~~~~---~~~iyv~gG~---~-----~~~~~~~d~~~~~~~W~~l~~~p-~~~r~~~~~ 80 (376)
T PRK14131 13 SSFAANAEQLPDLPVPFKNGTGAID---NNTVYVGLGS---A-----GTSWYKLDLNAPSKGWTKIAAFP-GGPREQAVA 80 (376)
T ss_pred hhcceecccCCCCCcCccCCeEEEE---CCEEEEEeCC---C-----CCeEEEEECCCCCCCeEECCcCC-CCCcccceE
Confidence 3455566688899999998888888 8999999995 1 1358899986 47899988643 158999999
Q ss_pred EEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEE-ECCEEEEEcCccCCCC------
Q 007468 131 VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLR------ 203 (602)
Q Consensus 131 ~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~-~~~~Lyv~GG~~~~~~------ 203 (602)
+++++.|||+||............++++|+||+.+++|+.+++ ..|.+|.+|++++ .+++||||||......
T Consensus 81 v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d 159 (376)
T PRK14131 81 AFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFED 159 (376)
T ss_pred EEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhh
Confidence 9999999999998642111112357899999999999999985 2477888888887 7999999999753100
Q ss_pred ------------------------CeeeeceEEEEECCCCceEEeccCCCCCCCC-CccceeEEEeCCEEEEEcCccCCC
Q 007468 204 ------------------------EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS-PRSGFQFFVYQDEVFLYGGYSKEV 258 (602)
Q Consensus 204 ------------------------~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~-~R~~~~~~~~~~~Iyv~GG~~~~~ 258 (602)
...+++++++||+.+++|+.+.++ |. +|.+|++++++++|||+||....
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~-----p~~~~~~~a~v~~~~~iYv~GG~~~~- 233 (376)
T PRK14131 160 LAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES-----PFLGTAGSAVVIKGNKLWLINGEIKP- 233 (376)
T ss_pred hhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC-----CCCCCCcceEEEECCEEEEEeeeECC-
Confidence 001357899999999999998877 54 78899999999999999997543
Q ss_pred CCccCCCCCCceeeeE--EEEeCCCCeeEEeecCCCCCCCC--------ceeEEEEECCeEEEeccccccccccccccc-
Q 007468 259 STDKNQSEKGIIHSDL--WSLDPRTWEWSKVKKIGMPPGPR--------AGFSMCVHKKRALLFGGVVDMEMKGDVIMS- 327 (602)
Q Consensus 259 ~~~~~~~~~~~~~~dv--~~yd~~t~~W~~l~~~g~~P~~R--------~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~- 327 (602)
+....++ +.||+.+++|+.+.++ |.+| .++.+++++++|||+||........+....
T Consensus 234 ---------~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~ 301 (376)
T PRK14131 234 ---------GLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGK 301 (376)
T ss_pred ---------CcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCC
Confidence 1122334 4567889999999876 3443 334467789999999998642210000000
Q ss_pred -------cccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhh
Q 007468 328 -------LFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADE 400 (602)
Q Consensus 328 -------~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (602)
.....+++||+.+++|..+..
T Consensus 302 ~~~~~~~~~~~~~e~yd~~~~~W~~~~~---------------------------------------------------- 329 (376)
T PRK14131 302 LYAHEGLKKSWSDEIYALVNGKWQKVGE---------------------------------------------------- 329 (376)
T ss_pred cccccCCcceeehheEEecCCcccccCc----------------------------------------------------
Confidence 012357899999999987655
Q ss_pred cccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecCeee
Q 007468 401 MESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEI 480 (602)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~ 480 (602)
+|.||..+++++++++|||+||....+ .
T Consensus 330 -------------------------------------------------lp~~r~~~~av~~~~~iyv~GG~~~~~---~ 357 (376)
T PRK14131 330 -------------------------------------------------LPQGLAYGVSVSWNNGVLLIGGETAGG---K 357 (376)
T ss_pred -------------------------------------------------CCCCccceEEEEeCCEEEEEcCCCCCC---c
Confidence 799999999999999999999976444 4
Q ss_pred eecchhhcccCCCCccE
Q 007468 481 TLDDLYSLNLSKLDEWK 497 (602)
Q Consensus 481 ~l~Dl~~ldl~~~~~W~ 497 (602)
.++|+|+|++.. ..|.
T Consensus 358 ~~~~v~~~~~~~-~~~~ 373 (376)
T PRK14131 358 AVSDVTLLSWDG-KKLT 373 (376)
T ss_pred EeeeEEEEEEcC-CEEE
Confidence 688999999876 5554
No 13
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.7e-37 Score=341.85 Aligned_cols=244 Identities=23% Similarity=0.394 Sum_probs=220.4
Q ss_pred EeeccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEE
Q 007468 58 HVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYL 137 (602)
Q Consensus 58 ~~~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~i 137 (602)
.|....++|.+|..++++++ ++.||++||... ....++.+++||+.+++|..+++|+ .+|+.|+++++++.|
T Consensus 312 ~w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~M~--~~R~~~~v~~l~g~i 383 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAPMN--TKRSDFGVAVLDGKL 383 (571)
T ss_pred cEeecCCCCcccccccEEEE---CCEEEEEccccC---CCcccceEEEecCCCCceeccCCcc--CccccceeEEECCEE
Confidence 34577889999999999999 899999999632 3347899999999999999998855 999999999999999
Q ss_pred EEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 138 yV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
|++||.++. ..++.+++||+.+++|+.+++ |+.+|++|++++++++||++||.+.... .++++++|||.
T Consensus 384 YavGG~dg~------~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sve~YDP~ 452 (571)
T KOG4441|consen 384 YAVGGFDGE------KSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSVECYDPE 452 (571)
T ss_pred EEEeccccc------cccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCcc---ccceEEEEcCC
Confidence 999999853 367899999999999999998 8889999999999999999999987542 68999999999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCC
Q 007468 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPR 297 (602)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 297 (602)
+++|+.++++ +.+|.++++++++++||++||+++. .....+++|||.+++|+.+.++ +.+|
T Consensus 453 t~~W~~~~~M-----~~~R~~~g~a~~~~~iYvvGG~~~~-----------~~~~~VE~ydp~~~~W~~v~~m---~~~r 513 (571)
T KOG4441|consen 453 TNTWTLIAPM-----NTRRSGFGVAVLNGKIYVVGGFDGT-----------SALSSVERYDPETNQWTMVAPM---TSPR 513 (571)
T ss_pred CCceeecCCc-----ccccccceEEEECCEEEEECCccCC-----------CccceEEEEcCCCCceeEcccC---cccc
Confidence 9999999999 8999999999999999999999875 4556699999999999999776 7899
Q ss_pred ceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 298 AGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 298 ~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
..+++++++++||++||+.+ ..+++.|.+|||.+++|+.+..
T Consensus 514 s~~g~~~~~~~ly~vGG~~~---------~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 514 SAVGVVVLGGKLYAVGGFDG---------NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccccEEEECCEEEEEecccC---------ccccceeEEcCCCCCceeeCCC
Confidence 99999999999999999776 4679999999999999998776
No 14
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=297.60 Aligned_cols=272 Identities=25% Similarity=0.457 Sum_probs=232.7
Q ss_pred cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC-----------CCCCC
Q 007468 112 EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----------CPSPR 180 (602)
Q Consensus 112 ~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~-----------~p~~R 180 (602)
.|..--.+. +.|..|++++++..||-|||+....+-. ...--||.+||..+.+|+.+++.- .|..|
T Consensus 3 ~WTVHLeGG--PrRVNHAavaVG~riYSFGGYCsGedy~-~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHLEGG--PRRVNHAAVAVGSRIYSFGGYCSGEDYD-AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEecCC--cccccceeeeecceEEecCCcccccccc-cCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 466433333 6799999999999999999987654321 111247899999999999998721 17789
Q ss_pred cccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCC
Q 007468 181 SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (602)
Q Consensus 181 ~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~ 260 (602)
++|+.+.+++++||.||.++. ....|.++.||+.+++|.+.... |.+|.+|-||++|++++.+|||||+...
T Consensus 80 YGHtvV~y~d~~yvWGGRND~---egaCN~Ly~fDp~t~~W~~p~v~--G~vPgaRDGHsAcV~gn~MyiFGGye~~--- 151 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDD---EGACNLLYEFDPETNVWKKPEVE--GFVPGARDGHSACVWGNQMYIFGGYEED--- 151 (392)
T ss_pred cCceEEEEcceEEEEcCccCc---ccccceeeeecccccccccccee--eecCCccCCceeeEECcEEEEecChHHH---
Confidence 999999999999999999774 23689999999999999998877 7889999999999999999999999766
Q ss_pred ccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
...+.++++.||..|.+|+.+...|.||.-|..|+++++++++|||||+.+....-.+....+.+.|..||+.|
T Consensus 152 ------a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T 225 (392)
T KOG4693|consen 152 ------AQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT 225 (392)
T ss_pred ------HHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccc
Confidence 34788999999999999999999999999999999999999999999998877666777888999999999999
Q ss_pred CceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeecc
Q 007468 341 HRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDD 420 (602)
Q Consensus 341 ~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (602)
..|...+..
T Consensus 226 ~aW~r~p~~----------------------------------------------------------------------- 234 (392)
T KOG4693|consen 226 GAWTRTPEN----------------------------------------------------------------------- 234 (392)
T ss_pred cccccCCCC-----------------------------------------------------------------------
Confidence 999976541
Q ss_pred CceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecCeeeeecchhhcccCCCCccEEee
Q 007468 421 GVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCII 500 (602)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~~l~Dl~~ldl~~~~~W~~~~ 500 (602)
.+.|.+|.+|++.+.++.||||||++..= .+.++|||+||..+ -.|+.|.
T Consensus 235 ---------------------------~~~P~GRRSHS~fvYng~~Y~FGGYng~l--n~HfndLy~FdP~t-~~W~~I~ 284 (392)
T KOG4693|consen 235 ---------------------------TMKPGGRRSHSTFVYNGKMYMFGGYNGTL--NVHFNDLYCFDPKT-SMWSVIS 284 (392)
T ss_pred ---------------------------CcCCCcccccceEEEcceEEEecccchhh--hhhhcceeeccccc-chheeee
Confidence 12699999999999999999999998443 34579999999988 9999996
Q ss_pred c
Q 007468 501 P 501 (602)
Q Consensus 501 ~ 501 (602)
+
T Consensus 285 ~ 285 (392)
T KOG4693|consen 285 V 285 (392)
T ss_pred c
Confidence 4
No 15
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.3e-37 Score=341.73 Aligned_cols=246 Identities=13% Similarity=0.223 Sum_probs=210.7
Q ss_pred EeeccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEE
Q 007468 58 HVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYL 137 (602)
Q Consensus 58 ~~~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~i 137 (602)
.|....++|.+|.+|+++++ ++.|||+||.... ...++.+++|||.+++|..+++ +|.+|+.|++++++++|
T Consensus 283 ~W~~l~~mp~~r~~~~~a~l---~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~~--m~~~R~~~~~~~~~g~I 354 (557)
T PHA02713 283 EYSVISTIPNHIINYASAIV---DNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELPP--MIKNRCRFSLAVIDDTI 354 (557)
T ss_pred eEEECCCCCccccceEEEEE---CCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCCC--CcchhhceeEEEECCEE
Confidence 34566789999999999999 8999999996221 2257899999999999999987 56899999999999999
Q ss_pred EEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCC--------------
Q 007468 138 YIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLR-------------- 203 (602)
Q Consensus 138 yV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~-------------- 203 (602)
|++||.... ..++.+++||+.+++|+.+++ +|.+|++|++++++++|||+||......
T Consensus 355 YviGG~~~~------~~~~sve~Ydp~~~~W~~~~~--mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 355 YAIGGQNGT------NVERTIECYTMGDDKWKMLPD--MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EEECCcCCC------CCCceEEEEECCCCeEEECCC--CCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 999998543 246789999999999999988 9999999999999999999999864211
Q ss_pred CeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC-C
Q 007468 204 EVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT-W 282 (602)
Q Consensus 204 ~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t-~ 282 (602)
....++.+++|||.+++|+.++++ |.+|.++++++++++|||+||++.. ....+.+++|||.+ +
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m-----~~~r~~~~~~~~~~~IYv~GG~~~~----------~~~~~~ve~Ydp~~~~ 491 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNF-----WTGTIRPGVVSHKDDIYVVCDIKDE----------KNVKTCIFRYNTNTYN 491 (557)
T ss_pred cccccceEEEECCCCCeEeecCCC-----CcccccCcEEEECCEEEEEeCCCCC----------CccceeEEEecCCCCC
Confidence 011367899999999999999998 8899999999999999999998643 12345689999999 8
Q ss_pred eeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEec
Q 007468 283 EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (602)
Q Consensus 283 ~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~ 349 (602)
+|+.++++ |.+|..+++++++++||++||+++ ...+++||+.+++|+.+.+.
T Consensus 492 ~W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~------------~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 492 GWELITTT---ESRLSALHTILHDNTIMMLHCYES------------YMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CeeEcccc---CcccccceeEEECCEEEEEeeecc------------eeehhhcCcccccccchhhh
Confidence 99999876 899999999999999999999865 24799999999999999883
No 16
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.1e-36 Score=311.74 Aligned_cols=321 Identities=26% Similarity=0.473 Sum_probs=260.7
Q ss_pred hceeeEEeeccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEe-cCCCCCCCceeeEE
Q 007468 52 AKKKEVHVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVI-SSPNSPPPRSAHQA 130 (602)
Q Consensus 52 ~~~~~~~~~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l-~~~~~P~~R~~hs~ 130 (602)
-+|+.+. ....|.|.||.+|.++++ ..-|+||||- + .-....++.||..+++|..- ..+..|++...|.+
T Consensus 17 ~rWrrV~-~~tGPvPrpRHGHRAVai---kELiviFGGG----N-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gf 87 (830)
T KOG4152|consen 17 VRWRRVQ-QSTGPVPRPRHGHRAVAI---KELIVIFGGG----N-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGF 87 (830)
T ss_pred cceEEEe-cccCCCCCccccchheee---eeeEEEecCC----c-ccchhhhhhhccccceeecchhcCCCCCchhhcce
Confidence 3555555 467789999999999999 7889999993 2 23788999999999999833 34567889999999
Q ss_pred EEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCC-----CCCCCcccEEEEECCEEEEEcCccCCCCC-
Q 007468 131 VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKG-----CPSPRSGHRMVLYKHKIIVFGGFYDTLRE- 204 (602)
Q Consensus 131 ~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~-----~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~- 204 (602)
+..+.+||+|||..... .+.|++|.+-...-.|.++.+.. .|.||-+|+..+++++.|+|||..+...+
T Consensus 88 vcdGtrilvFGGMvEYG-----kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDp 162 (830)
T KOG4152|consen 88 VCDGTRILVFGGMVEYG-----KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDP 162 (830)
T ss_pred EecCceEEEEccEeeec-----cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCc
Confidence 99999999999986543 36788877666666777776532 28899999999999999999998653322
Q ss_pred ----eeeeceEEEEECCCC----ceEEeccCCCCCCCCCccceeEEEe------CCEEEEEcCccCCCCCccCCCCCCce
Q 007468 205 ----VRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVY------QDEVFLYGGYSKEVSTDKNQSEKGII 270 (602)
Q Consensus 205 ----~~~~~~v~~yd~~t~----~W~~v~~~~~~~~P~~R~~~~~~~~------~~~Iyv~GG~~~~~~~~~~~~~~~~~ 270 (602)
.+|+|++|++++.-. .|...-.. |.+|.||..|+++++ ..++|||||+++ ..
T Consensus 163 knNvPrYLnDlY~leL~~Gsgvv~W~ip~t~--Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G------------~R 228 (830)
T KOG4152|consen 163 KNNVPRYLNDLYILELRPGSGVVAWDIPITY--GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG------------CR 228 (830)
T ss_pred ccccchhhcceEEEEeccCCceEEEeccccc--CCCCCCcccceeEEEEeccCCcceEEEEccccc------------cc
Confidence 349999999999754 38877665 778999999999998 458999999986 48
Q ss_pred eeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccc-----cccccccccCeeEEEECCCCceEE
Q 007468 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK-----GDVIMSLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 271 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~-----~~~~~~~~~ndv~~yd~~t~~W~~ 345 (602)
+.|+|.+|+.+.+|.+....|.+|.||+.|++++++++||||||+...-.. ...-+-.+.+.+-++|+++..|..
T Consensus 229 LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~t 308 (830)
T KOG4152|consen 229 LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWET 308 (830)
T ss_pred ccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheee
Confidence 899999999999999999999999999999999999999999998654321 222334678889999999999999
Q ss_pred eEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeeccCceee
Q 007468 346 LELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAA 425 (602)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (602)
+.... + ||
T Consensus 309 l~~d~--------------------~-----------------------------------------------ed----- 316 (830)
T KOG4152|consen 309 LLMDT--------------------L-----------------------------------------------ED----- 316 (830)
T ss_pred eeecc--------------------c-----------------------------------------------cc-----
Confidence 88721 0 00
Q ss_pred ecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEe---cCeeeeecchhhcccCCCC
Q 007468 426 KSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEI---NDQEITLDDLYSLNLSKLD 494 (602)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~---g~~~~~l~Dl~~ldl~~~~ 494 (602)
...|.+|.+||++.++.+|||+-|.... .+.|+.+-|||-||..+..
T Consensus 317 ----------------------~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 317 ----------------------NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP 366 (830)
T ss_pred ----------------------cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence 0159999999999999999999997643 3678999999999998854
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=328.45 Aligned_cols=272 Identities=18% Similarity=0.263 Sum_probs=224.4
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEE
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWML 161 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~y 161 (602)
..+++.||.. . .+..+.+|++..++|..++.. | .+..|+++++++.|||+||..... ...+++++|
T Consensus 251 ~~~~~~~g~~----~--~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~y 316 (534)
T PHA03098 251 SIIYIHITMS----I--FTYNYITNYSPLSEINTIIDI--H-YVYCFGSVVLNNVIYFIGGMNKNN-----LSVNSVVSY 316 (534)
T ss_pred cceEeecccc----h--hhceeeecchhhhhcccccCc--c-ccccceEEEECCEEEEECCCcCCC-----CeeccEEEE
Confidence 4455556631 1 234566899999999988642 2 345678999999999999986432 246799999
Q ss_pred ECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeE
Q 007468 162 DLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQF 241 (602)
Q Consensus 162 d~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~ 241 (602)
|+.+++|..+++ +|.+|.+|++++++++|||+||... ...++++++||+.+++|+.++++ |.||++|++
T Consensus 317 d~~~~~W~~~~~--~~~~R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~l-----p~~r~~~~~ 385 (534)
T PHA03098 317 DTKTKSWNKVPE--LIYPRKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPGESKWREEPPL-----IFPRYNPCV 385 (534)
T ss_pred eCCCCeeeECCC--CCcccccceEEEECCEEEEEeCCCC----CEecceEEEEcCCCCceeeCCCc-----CcCCccceE
Confidence 999999999987 8899999999999999999999863 23578999999999999999888 889999999
Q ss_pred EEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccc
Q 007468 242 FVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMK 321 (602)
Q Consensus 242 ~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~ 321 (602)
++++++|||+||.... ...++++++||+.+++|+.++++ |.+|.+|++++++++|||+||......
T Consensus 386 ~~~~~~iYv~GG~~~~----------~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~- 451 (534)
T PHA03098 386 VNVNNLIYVIGGISKN----------DELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDN- 451 (534)
T ss_pred EEECCEEEEECCcCCC----------CcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCC-
Confidence 9999999999997544 23468899999999999998765 889999999999999999999864321
Q ss_pred cccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhc
Q 007468 322 GDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEM 401 (602)
Q Consensus 322 ~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (602)
...++.+++||+.+++|+.++.
T Consensus 452 -----~~~~~~v~~yd~~~~~W~~~~~----------------------------------------------------- 473 (534)
T PHA03098 452 -----IKVYNIVESYNPVTNKWTELSS----------------------------------------------------- 473 (534)
T ss_pred -----CcccceEEEecCCCCceeeCCC-----------------------------------------------------
Confidence 1235679999999999998765
Q ss_pred ccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecCeeee
Q 007468 402 ESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEIT 481 (602)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~~ 481 (602)
+|.||.++++++.+++|||+||.... ..
T Consensus 474 ------------------------------------------------~~~~r~~~~~~~~~~~iyv~GG~~~~----~~ 501 (534)
T PHA03098 474 ------------------------------------------------LNFPRINASLCIFNNKIYVVGGDKYE----YY 501 (534)
T ss_pred ------------------------------------------------CCcccccceEEEECCEEEEEcCCcCC----cc
Confidence 68889999999999999999998732 24
Q ss_pred ecchhhcccCCCCccEEeecCC
Q 007468 482 LDDLYSLNLSKLDEWKCIIPAS 503 (602)
Q Consensus 482 l~Dl~~ldl~~~~~W~~~~~~~ 503 (602)
++++++||+.+ ++|+.+.+..
T Consensus 502 ~~~v~~yd~~~-~~W~~~~~~p 522 (534)
T PHA03098 502 INEIEVYDDKT-NTWTLFCKFP 522 (534)
T ss_pred cceeEEEeCCC-CEEEecCCCc
Confidence 78999999998 9999886543
No 18
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=317.39 Aligned_cols=256 Identities=33% Similarity=0.586 Sum_probs=223.8
Q ss_pred ccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEec-CCCCCCCceeeEEEEECCEEEE
Q 007468 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVIS-SPNSPPPRSAHQAVSWKNYLYI 139 (602)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~-~~~~P~~R~~hs~~~~~~~iyV 139 (602)
.....|.+|.+|+++.+ ++++|||||........ -.+||+||..+..|.... .+..|.+|++|++++++++||+
T Consensus 53 ~~~~~p~~R~~hs~~~~---~~~~~vfGG~~~~~~~~--~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~l 127 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLI---GNKLYVFGGYGSGDRLT--DLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYL 127 (482)
T ss_pred cCCCCcchhhccceeEE---CCEEEEECCCCCCCccc--cceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEE
Confidence 34568999999999999 89999999963322211 116999999999999654 4557889999999999999999
Q ss_pred EeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCC-CCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCC
Q 007468 140 FGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~-p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t 218 (602)
|||.... ..++++++.||+.|++|..+.+.+. |.+|.+|++++++++||||||...... .+|++|+||+.+
T Consensus 128 fGG~~~~-----~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~---~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 128 FGGTDKK-----YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD---SLNDLHIYDLET 199 (482)
T ss_pred EccccCC-----CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc---ceeeeeeecccc
Confidence 9998752 2358999999999999999988776 999999999999999999999977542 699999999999
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCc
Q 007468 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRA 298 (602)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~ 298 (602)
.+|.++... +..|.||++|+++++++++|||||.... ..+++|+|+||+.++.|..+...|..|.+|+
T Consensus 200 ~~W~~~~~~--g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~ 267 (482)
T KOG0379|consen 200 STWSELDTQ--GEAPSPRYGHAMVVVGNKLLVFGGGDDG----------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRS 267 (482)
T ss_pred ccceecccC--CCCCCCCCCceEEEECCeEEEEeccccC----------CceecceEeeecccceeeeccccCCCCCCcc
Confidence 999999888 6779999999999999999999999833 4899999999999999999999999999999
Q ss_pred eeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 299 GFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 299 ~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
+|++++.+.+++||||..... ...+.++|.|++.+..|..+..
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~-------~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPK-------QEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeeeEEECCEEEEEcCCcccc-------cccccccccccccccceeeeec
Confidence 999999999999999986531 1258999999999999999887
No 19
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=318.41 Aligned_cols=237 Identities=18% Similarity=0.303 Sum_probs=201.3
Q ss_pred CcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCC
Q 007468 69 RSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPN 148 (602)
Q Consensus 69 R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~ 148 (602)
+..|+++++ ++.|||+||... .....+++++||+.+++|..++. +|.+|.+|++++++++|||+||....
T Consensus 285 ~~~~~~~~~---~~~lyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~--~~~~R~~~~~~~~~~~lyv~GG~~~~-- 354 (534)
T PHA03098 285 VYCFGSVVL---NNVIYFIGGMNK---NNLSVNSVVSYDTKTKSWNKVPE--LIYPRKNPGVTVFNNRIYVIGGIYNS-- 354 (534)
T ss_pred cccceEEEE---CCEEEEECCCcC---CCCeeccEEEEeCCCCeeeECCC--CCcccccceEEEECCEEEEEeCCCCC--
Confidence 445677777 899999999632 22356899999999999999876 56889999999999999999998632
Q ss_pred CCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC
Q 007468 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 149 ~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
..++++++||+.+++|+.+++ +|.+|++|++++++++|||+||...... .++++++||+.+++|+.++++
T Consensus 355 ----~~~~~v~~yd~~~~~W~~~~~--lp~~r~~~~~~~~~~~iYv~GG~~~~~~---~~~~v~~yd~~t~~W~~~~~~- 424 (534)
T PHA03098 355 ----ISLNTVESWKPGESKWREEPP--LIFPRYNPCVVNVNNLIYVIGGISKNDE---LLKTVECFSLNTNKWSKGSPL- 424 (534)
T ss_pred ----EecceEEEEcCCCCceeeCCC--cCcCCccceEEEECCEEEEECCcCCCCc---ccceEEEEeCCCCeeeecCCC-
Confidence 257899999999999999987 8999999999999999999999754322 478999999999999999887
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCe
Q 007468 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKR 308 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~ 308 (602)
|.+|.+|++++++++|||+||..... ....++.+++||+.+++|+.++++ |.+|.++++++++++
T Consensus 425 ----p~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 425 ----PISHYGGCAIYHDGKIYVIGGISYID--------NIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNK 489 (534)
T ss_pred ----CccccCceEEEECCEEEEECCccCCC--------CCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCE
Confidence 88999999999999999999986540 012356699999999999999765 778999999999999
Q ss_pred EEEeccccccccccccccccccCeeEEEECCCCceEEeEec
Q 007468 309 ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELR 349 (602)
Q Consensus 309 lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~ 349 (602)
|||+||.... .+.++|++||+.+++|..++..
T Consensus 490 iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 490 IYVVGGDKYE---------YYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred EEEEcCCcCC---------cccceeEEEeCCCCEEEecCCC
Confidence 9999998752 3478999999999999988763
No 20
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=313.97 Aligned_cols=256 Identities=31% Similarity=0.537 Sum_probs=224.6
Q ss_pred CCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecC-eEEEEECCCCcEEEcccCCC-CCCCcccEEEEECCEEEEEc
Q 007468 119 PNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYK-DFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFG 196 (602)
Q Consensus 119 ~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~-dv~~yd~~t~~W~~~~~~~~-p~~R~~h~~~~~~~~Lyv~G 196 (602)
...|.+|.+|+++.+++.+|||||....... .+ ++|+||+.+..|......+. |.+|++|++++++++||+||
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~-----~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRL-----TDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCcc-----ccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 4468999999999999999999998765433 12 69999999999999888765 88999999999999999999
Q ss_pred CccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEE
Q 007468 197 GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWS 276 (602)
Q Consensus 197 G~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~ 276 (602)
|.... ...+++++.||+.|.+|..+.+. +..|++|.+|++++++++||||||.... ...++++|+
T Consensus 130 G~~~~---~~~~~~l~~~d~~t~~W~~l~~~--~~~P~~r~~Hs~~~~g~~l~vfGG~~~~----------~~~~ndl~i 194 (482)
T KOG0379|consen 130 GTDKK---YRNLNELHSLDLSTRTWSLLSPT--GDPPPPRAGHSATVVGTKLVVFGGIGGT----------GDSLNDLHI 194 (482)
T ss_pred cccCC---CCChhheEeccCCCCcEEEecCc--CCCCCCcccceEEEECCEEEEECCccCc----------ccceeeeee
Confidence 99863 23589999999999999999888 5579999999999999999999999876 338999999
Q ss_pred EeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEecCCCchhh
Q 007468 277 LDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKD 356 (602)
Q Consensus 277 yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~ 356 (602)
||+.+.+|.++...|..|.||.+|+++++++++|||||.+.. ..+++|+|+||+.+..|..+...+
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~--------~~~l~D~~~ldl~~~~W~~~~~~g------ 260 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDG--------DVYLNDVHILDLSTWEWKLLPTGG------ 260 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccC--------CceecceEeeecccceeeeccccC------
Confidence 999999999999999999999999999999999999998732 478999999999999999655511
Q ss_pred hhcccccCCCCchhhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeeccCceeeecCCCCCCccc
Q 007468 357 KLKKSSEQKPNSSALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKK 436 (602)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (602)
T Consensus 261 -------------------------------------------------------------------------------- 260 (482)
T KOG0379|consen 261 -------------------------------------------------------------------------------- 260 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCcCCccCcccceeeecCeEEEEeceEEecCeeeeecchhhcccCCCCccEEeecCC
Q 007468 437 KSDMQKSLLPEIVKPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCIIPAS 503 (602)
Q Consensus 437 ~~~~~~~~~~~~~~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~~l~Dl~~ldl~~~~~W~~~~~~~ 503 (602)
. .|.||+.|++++.+.+++|+||..... ...+.|+|.|++++ ..|..+....
T Consensus 261 -----------~-~p~~R~~h~~~~~~~~~~l~gG~~~~~--~~~l~~~~~l~~~~-~~w~~~~~~~ 312 (482)
T KOG0379|consen 261 -----------D-LPSPRSGHSLTVSGDHLLLFGGGTDPK--QEPLGDLYGLDLET-LVWSKVESVG 312 (482)
T ss_pred -----------C-CCCCcceeeeEEECCEEEEEcCCcccc--cccccccccccccc-cceeeeeccc
Confidence 1 599999999999999999999987441 12699999999997 9999998777
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=5.5e-32 Score=297.19 Aligned_cols=208 Identities=17% Similarity=0.226 Sum_probs=182.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
++.||++||.. + ....+.+++|||.+++|..++++ |.+|..|+++++++.||++||... .+.+++
T Consensus 271 ~~~lyviGG~~--~--~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~~~~~iYviGG~~~---------~~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWM--N--NEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVPANNKLYVVGGLPN---------PTSVER 335 (480)
T ss_pred CCEEEEEcCCC--C--CCcCCeEEEEECCCCEEEECCCC--CchhhcceEEEECCEEEEECCcCC---------CCceEE
Confidence 79999999962 1 23567899999999999999874 589999999999999999999742 256899
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCcccee
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQ 240 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~ 240 (602)
||+.+++|..+++ +|.+|.+|++++++++|||+||.... .+.+++|||.+++|+.++++ |.||.+|+
T Consensus 336 ydp~~n~W~~~~~--l~~~r~~~~~~~~~g~IYviGG~~~~------~~~ve~ydp~~~~W~~~~~m-----~~~r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPS--LLKPRCNPAVASINNVIYVIGGHSET------DTTTEYLLPNHDQWQFGPST-----YYPHYKSC 402 (480)
T ss_pred EECCCCeEEECCC--CCCCCcccEEEEECCEEEEecCcCCC------CccEEEEeCCCCEEEeCCCC-----CCccccce
Confidence 9999999999988 89999999999999999999998542 36799999999999999888 89999999
Q ss_pred EEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccccccc
Q 007468 241 FFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEM 320 (602)
Q Consensus 241 ~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~ 320 (602)
+++++++|||+||. +.+|||.+++|+.++++ |.+|.++++++++++|||+||....
T Consensus 403 ~~~~~~~IYv~GG~-------------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~-- 458 (480)
T PHA02790 403 ALVFGRRLFLVGRN-------------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRG-- 458 (480)
T ss_pred EEEECCEEEEECCc-------------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCC--
Confidence 99999999999984 46899999999999876 7899999999999999999998631
Q ss_pred ccccccccccCeeEEEECCCCceEEeE
Q 007468 321 KGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 321 ~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
...+.+++||+.+++|+...
T Consensus 459 -------~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 459 -------SYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred -------cccceEEEEECCCCeEEecC
Confidence 23578999999999998653
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=7.6e-32 Score=282.25 Aligned_cols=237 Identities=19% Similarity=0.290 Sum_probs=184.6
Q ss_pred EeeccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcE----EEecCCCCCCCceeeEEEEE
Q 007468 58 HVEDNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW----KVISSPNSPPPRSAHQAVSW 133 (602)
Q Consensus 58 ~~~~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W----~~l~~~~~P~~R~~hs~~~~ 133 (602)
.|....++|.+|..++++++ ++.|||+||.. + ...++++++||+.+++| ..+++ +|.+|..|+++++
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~---~~~lyviGG~~--~--~~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~ 122 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV---ENGIYYIGGSN--S--SERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYK 122 (323)
T ss_pred eEEEcccCCccccceEEEEE---CCEEEEEcCCC--C--CCCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEE
Confidence 45566788999998888888 89999999962 2 22578999999999998 45544 6789999999999
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCC-CCCcccEEEEECCEEEEEcCccCCCCCeeeeceEE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p-~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
+++|||+||.... ..++++++||+.+++|+.+++ +| .+|..|++++++++||||||.... ...+++
T Consensus 123 ~~~iYv~GG~~~~------~~~~~v~~yd~~~~~W~~~~~--~p~~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~ 189 (323)
T TIGR03548 123 DGTLYVGGGNRNG------KPSNKSYLFNLETQEWFELPD--FPGEPRVQPVCVKLQNELYVFGGGSNI-----AYTDGY 189 (323)
T ss_pred CCEEEEEeCcCCC------ccCceEEEEcCCCCCeeECCC--CCCCCCCcceEEEECCEEEEEcCCCCc-----cccceE
Confidence 9999999997432 236899999999999999986 55 479999999999999999998642 246789
Q ss_pred EEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCcc---------------------CCCCCCce
Q 007468 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDK---------------------NQSEKGII 270 (602)
Q Consensus 213 ~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~---------------------~~~~~~~~ 270 (602)
+||+.+++|+.+++++....|.++.+++++++ +++|||+||.+.....+. .......+
T Consensus 190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T TIGR03548 190 KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNW 269 (323)
T ss_pred EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCc
Confidence 99999999999988743334555555555444 799999999874310000 00011123
Q ss_pred eeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccccc
Q 007468 271 HSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDM 318 (602)
Q Consensus 271 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~ 318 (602)
.+++++||+.+++|+.+.++ +..+|.++++++++++|||+||....
T Consensus 270 ~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 270 NRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred CceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEeccccC
Confidence 47899999999999999754 23689999999999999999998654
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.1e-31 Score=292.59 Aligned_cols=211 Identities=17% Similarity=0.235 Sum_probs=184.2
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeec
Q 007468 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYN 209 (602)
Q Consensus 130 ~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~ 209 (602)
++.+++.|||+||.... ...+.+++||+.+++|..+++ +|.+|..|++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~------~~~~~v~~Ydp~~~~W~~~~~--m~~~r~~~~~v~~~~~iYviGG~~~-------~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN------EIHNNAIAVNYISNNWIPIPP--MNSPRLYASGVPANNKLYVVGGLPN-------PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCC------CcCCeEEEEECCCCEEEECCC--CCchhhcceEEEECCEEEEECCcCC-------CC
Confidence 34589999999997542 246789999999999999998 8999999999999999999999753 25
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 210 ~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
++++||+.+++|+.++++ |.+|.+|++++++++|||+||.... .+.+.+|||.+++|+.+++
T Consensus 332 sve~ydp~~n~W~~~~~l-----~~~r~~~~~~~~~g~IYviGG~~~~-------------~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSL-----LKPRCNPAVASINNVIYVIGGHSET-------------DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ceEEEECCCCeEEECCCC-----CCCCcccEEEEECCEEEEecCcCCC-------------CccEEEEeCCCCEEEeCCC
Confidence 799999999999999988 8999999999999999999997533 2468899999999999987
Q ss_pred CCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEecCCCchhhhhcccccCCCCch
Q 007468 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLELRKEKSTKDKLKKSSEQKPNSS 369 (602)
Q Consensus 290 ~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (602)
+ |.+|.+|++++++++|||+||. +.+||+.+++|+.+++
T Consensus 394 m---~~~r~~~~~~~~~~~IYv~GG~-----------------~e~ydp~~~~W~~~~~--------------------- 432 (480)
T PHA02790 394 T---YYPHYKSCALVFGRRLFLVGRN-----------------AEFYCESSNTWTLIDD--------------------- 432 (480)
T ss_pred C---CCccccceEEEECCEEEEECCc-----------------eEEecCCCCcEeEcCC---------------------
Confidence 6 7899999999999999999984 4689999999998876
Q ss_pred hhhhccCchhhhhcccCccchhhhhhhhhhhcccccccccccCCCceeeccCceeeecCCCCCCccccccccccCCCCCc
Q 007468 370 ALHEKLNPIEAEEFDANEKDENAEYYEEADEMESNIDNLSECVPNSVIVDDGVLAAKSGGKPYESKKKSDMQKSLLPEIV 449 (602)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (602)
T Consensus 433 -------------------------------------------------------------------------------- 432 (480)
T PHA02790 433 -------------------------------------------------------------------------------- 432 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCcccceeeecCeEEEEeceEEecCeeeeecchhhcccCCCCccEEe
Q 007468 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSKLDEWKCI 499 (602)
Q Consensus 450 ~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~~l~Dl~~ldl~~~~~W~~~ 499 (602)
+|.||.++++++++++|||+||.... ..++.+.+||+.+ ++|+..
T Consensus 433 m~~~r~~~~~~v~~~~IYviGG~~~~----~~~~~ve~Yd~~~-~~W~~~ 477 (480)
T PHA02790 433 PIYPRDNPELIIVDNKLLLIGGFYRG----SYIDTIEVYNNRT-YSWNIW 477 (480)
T ss_pred CCCCccccEEEEECCEEEEECCcCCC----cccceEEEEECCC-CeEEec
Confidence 79999999999999999999998622 2367899999998 999753
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.98 E-value=5.1e-31 Score=278.65 Aligned_cols=259 Identities=20% Similarity=0.250 Sum_probs=188.3
Q ss_pred eeccCCCC-CCCcceEEEEecCCCCEEEEEcceecCC--CCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEE-EEC
Q 007468 59 VEDNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAV-SWK 134 (602)
Q Consensus 59 ~~~~~~~P-~~R~~~s~~~~~~~~~~iyv~GG~~~~g--~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~-~~~ 134 (602)
|...+++| .+|..|+++++ +++|||+||..... .....++++|+||+.+++|+.++. .+|.+|.+|+++ +++
T Consensus 43 W~~l~~~p~~~R~~~~~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~ 118 (346)
T TIGR03547 43 WQKIADFPGGPRNQAVAAAI---DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHN 118 (346)
T ss_pred ceECCCCCCCCcccceEEEE---CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeC
Confidence 44566777 58999999999 89999999973221 112367899999999999999974 357788888877 689
Q ss_pred CEEEEEeCccCCCCC----------------------------CcceecCeEEEEECCCCcEEEcccCCCCC-CCcccEE
Q 007468 135 NYLYIFGGEFTSPNQ----------------------------ERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRM 185 (602)
Q Consensus 135 ~~iyV~GG~~~~~~~----------------------------~~~~~~~dv~~yd~~t~~W~~~~~~~~p~-~R~~h~~ 185 (602)
++|||+||....... ..+..++.+++||+.+++|+.+++ +|. +|++|++
T Consensus 119 g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~--~p~~~r~~~~~ 196 (346)
T TIGR03547 119 GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE--NPFLGTAGSAI 196 (346)
T ss_pred CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc--CCCCcCCCceE
Confidence 999999997532000 000124789999999999999987 775 7899999
Q ss_pred EEECCEEEEEcCccCCCCCeeeeceEEEEE--CCCCceEEeccCCCCC--CCCCccceeEEEeCCEEEEEcCccCCCCCc
Q 007468 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFD--LDQFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTD 261 (602)
Q Consensus 186 ~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd--~~t~~W~~v~~~~~~~--~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~ 261 (602)
++++++||||||...... ....++.|+ +.+++|+.+++++... .+..|.+|++++++++|||+||........
T Consensus 197 ~~~~~~iyv~GG~~~~~~---~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~ 273 (346)
T TIGR03547 197 VHKGNKLLLINGEIKPGL---RTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQE 273 (346)
T ss_pred EEECCEEEEEeeeeCCCc---cchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchh
Confidence 999999999999854321 234566665 5677999999883210 112235677788899999999986320000
Q ss_pred ------cCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEE
Q 007468 262 ------KNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (602)
Q Consensus 262 ------~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~ 335 (602)
.........+..+.+||+.+++|+.+.++ |.+|.++++++++++|||+||.... ...+++|+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~ 342 (346)
T TIGR03547 274 NYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSG--------GKAVTDVYL 342 (346)
T ss_pred hhhcCCccccCCCCceeEeeEEEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCC--------CCEeeeEEE
Confidence 00000001234688999999999999765 8889999988999999999998653 246788887
Q ss_pred EE
Q 007468 336 FQ 337 (602)
Q Consensus 336 yd 337 (602)
|-
T Consensus 343 ~~ 344 (346)
T TIGR03547 343 LS 344 (346)
T ss_pred EE
Confidence 74
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=1.2e-30 Score=278.68 Aligned_cols=258 Identities=21% Similarity=0.286 Sum_probs=190.4
Q ss_pred ccCCCC-CCCcceEEEEecCCCCEEEEEcceecCC--CCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEE-ECCE
Q 007468 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG--NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNY 136 (602)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~iyv~GG~~~~g--~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~-~~~~ 136 (602)
...++| .+|.+|+++++ ++.||||||..... .....++++|+||+.+++|+.++.+ .|.+|.+|++++ .+++
T Consensus 66 ~l~~~p~~~r~~~~~v~~---~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~ 141 (376)
T PRK14131 66 KIAAFPGGPREQAVAAFI---DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGK 141 (376)
T ss_pred ECCcCCCCCcccceEEEE---CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCE
Confidence 445555 58999999998 89999999964211 1124678999999999999999752 467788888887 7999
Q ss_pred EEEEeCccCCCC----------------------------CCcceecCeEEEEECCCCcEEEcccCCCCC-CCcccEEEE
Q 007468 137 LYIFGGEFTSPN----------------------------QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-PRSGHRMVL 187 (602)
Q Consensus 137 iyV~GG~~~~~~----------------------------~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~-~R~~h~~~~ 187 (602)
|||+||...... ...+..++++++||+.+++|+.+++ +|. +|.+|++++
T Consensus 142 IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~--~p~~~~~~~a~v~ 219 (376)
T PRK14131 142 AYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE--SPFLGTAGSAVVI 219 (376)
T ss_pred EEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc--CCCCCCCcceEEE
Confidence 999999753100 0001124789999999999999987 664 788999999
Q ss_pred ECCEEEEEcCccCCCCCeeeeceEE--EEECCCCceEEeccCCCCCCCCCcc--------ceeEEEeCCEEEEEcCccCC
Q 007468 188 YKHKIIVFGGFYDTLREVRYYNDLY--VFDLDQFKWQEIKPRFGSMWPSPRS--------GFQFFVYQDEVFLYGGYSKE 257 (602)
Q Consensus 188 ~~~~Lyv~GG~~~~~~~~~~~~~v~--~yd~~t~~W~~v~~~~~~~~P~~R~--------~~~~~~~~~~Iyv~GG~~~~ 257 (602)
++++||||||...... ....++ .||+.+++|..++++ |.+|. ++.+++++++|||+||....
T Consensus 220 ~~~~iYv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~ 291 (376)
T PRK14131 220 KGNKLWLINGEIKPGL---RTDAVKQGKFTGNNLKWQKLPDL-----PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFP 291 (376)
T ss_pred ECCEEEEEeeeECCCc---CChhheEEEecCCCcceeecCCC-----CCCCcCCcCCccceEeceeECCEEEEeeccCCC
Confidence 9999999999754321 234454 457788999999988 44442 33356779999999998643
Q ss_pred CCCccCCCCCC--------ceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccc
Q 007468 258 VSTDKNQSEKG--------IIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (602)
Q Consensus 258 ~~~~~~~~~~~--------~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 329 (602)
. .......+ .....+.+||+.+++|+.+..+ |.+|.++++++++++|||+||.... ...
T Consensus 292 ~--~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~--------~~~ 358 (376)
T PRK14131 292 G--ARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAG--------GKA 358 (376)
T ss_pred C--ChhhhhcCCcccccCCcceeehheEEecCCcccccCcC---CCCccceEEEEeCCEEEEEcCCCCC--------CcE
Confidence 0 00000000 0123477999999999998654 8899999999999999999997542 245
Q ss_pred cCeeEEEECCCCceEE
Q 007468 330 LNELYGFQLDNHRWYP 345 (602)
Q Consensus 330 ~ndv~~yd~~t~~W~~ 345 (602)
+++|++|++..+.|..
T Consensus 359 ~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 359 VSDVTLLSWDGKKLTV 374 (376)
T ss_pred eeeEEEEEEcCCEEEE
Confidence 8899999999888764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=4e-31 Score=271.13 Aligned_cols=216 Identities=27% Similarity=0.574 Sum_probs=184.1
Q ss_pred CcEEEec--CCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCC-CCCCcccEEEE
Q 007468 111 QEWKVIS--SPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVL 187 (602)
Q Consensus 111 ~~W~~l~--~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~-p~~R~~h~~~~ 187 (602)
-.|+.+. .++.|.||++|-++++..-|+||||-+.. ..+.+.+||..+++|......|. |.+...|+.+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-------iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-------IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc-------chhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 3688765 45678899999999999999999997654 46789999999999998777665 88889999999
Q ss_pred ECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC--CCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCC
Q 007468 188 YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF--GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (602)
Q Consensus 188 ~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~--~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (602)
.+.+||+|||+...++ |.|++|.+-...-.|.++.+.+ .|.+|.||.||++++++++.|+|||.... .+.-.+
T Consensus 90 dGtrilvFGGMvEYGk---YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd--seDpkn 164 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYGK---YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND--SEDPKN 164 (830)
T ss_pred cCceEEEEccEeeecc---ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc--ccCccc
Confidence 9999999999987644 8999999888888899997654 45778999999999999999999998766 333344
Q ss_pred CCCceeeeEEEEeCCC----CeeEEeecCCCCCCCCceeEEEEE------CCeEEEeccccccccccccccccccCeeEE
Q 007468 266 EKGIIHSDLWSLDPRT----WEWSKVKKIGMPPGPRAGFSMCVH------KKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (602)
Q Consensus 266 ~~~~~~~dv~~yd~~t----~~W~~l~~~g~~P~~R~~~s~~~~------~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~ 335 (602)
....+++|+|++++.. -.|......|..|.+|-.|+++++ ..+||||||.++ ..+.|+|.
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G----------~RLgDLW~ 234 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG----------CRLGDLWT 234 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc----------ccccceeE
Confidence 4567899999999763 369999999999999999999998 357999999976 56999999
Q ss_pred EECCCCceEEeEe
Q 007468 336 FQLDNHRWYPLEL 348 (602)
Q Consensus 336 yd~~t~~W~~l~~ 348 (602)
+|+++..|.+...
T Consensus 235 Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 235 LDLDTLTWNKPSL 247 (830)
T ss_pred Eecceeecccccc
Confidence 9999999998766
No 27
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.82 E-value=4.1e-21 Score=197.69 Aligned_cols=264 Identities=22% Similarity=0.359 Sum_probs=190.0
Q ss_pred CCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC-CCCCceeeEEEEECC--EEEEE
Q 007468 64 PAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSWKN--YLYIF 140 (602)
Q Consensus 64 ~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~-~P~~R~~hs~~~~~~--~iyV~ 140 (602)
.-|..|.||.++..+- .+.||++|| ++|-. .+.|+|.|+...+.|..+.... .|-.|+.|-+|.... +||+.
T Consensus 256 ~~p~~RgGHQMV~~~~-~~CiYLYGG--WdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLl 330 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ-TECVYLYGG--WDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLL 330 (723)
T ss_pred cCccccCcceEEEeCC-CcEEEEecC--cccch--hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhh
Confidence 5688999999998852 468999999 56644 6789999999999999887554 788999999999855 89999
Q ss_pred eCccCCCCCCcceecCeEEEEECCCCcEEEcccC----CCCCCCcccEEEEECCE--EEEEcCccCCCCCeeeeceEEEE
Q 007468 141 GGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK----GCPSPRSGHRMVLYKHK--IIVFGGFYDTLREVRYYNDLYVF 214 (602)
Q Consensus 141 GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~----~~p~~R~~h~~~~~~~~--Lyv~GG~~~~~~~~~~~~~v~~y 214 (602)
|-+..+.....+..-+|+|+||..++.|..+... |.|...+.|.|++...+ ||||||..-... ...+..+|.|
T Consensus 331 G~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~-e~~f~GLYaf 409 (723)
T KOG2437|consen 331 GRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCN-EPQFSGLYAF 409 (723)
T ss_pred hhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCC-CccccceEEE
Confidence 9887766554455678999999999999988642 44899999999999877 999999864332 2247889999
Q ss_pred ECCCCceEEeccCCCC-----CCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 215 DLDQFKWQEIKPRFGS-----MWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 215 d~~t~~W~~v~~~~~~-----~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
|+....|..+...... .....|.+|+|-++ +..+|+|||.... +-++-.++|++....=..+
T Consensus 410 ~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-----------~El~L~f~y~I~~E~~~~~ 478 (723)
T KOG2437|consen 410 NCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-----------TELNLFFSYDIDSEHVDII 478 (723)
T ss_pred ecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-----------eEEeehhcceeccccchhh
Confidence 9999999887543211 11346889998777 8899999998766 5566677787654332222
Q ss_pred ec-----CCCCCCCCceeEEEEE---CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 288 KK-----IGMPPGPRAGFSMCVH---KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 288 ~~-----~g~~P~~R~~~s~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.. ....|++ ....-+.+ ..+|++.-|........ .....|.+|+|++.++.|..+..
T Consensus 479 s~~~k~dsS~~pS~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~---e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 479 SDGTKKDSSMVPST-GFTQRATIDPELNEIHVLSGLSKDKEKR---EENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hccCcCccccCCCc-chhhhcccCCCCcchhhhcccchhccCc---cccccCcEEEEEecccchhhHhh
Confidence 11 1112222 11111222 45677666654322111 13367899999999999987654
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.80 E-value=3e-18 Score=171.81 Aligned_cols=258 Identities=20% Similarity=0.282 Sum_probs=186.2
Q ss_pred ccCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCC--CcEEEecCCCCCCCceeeEEEEECCEEE
Q 007468 61 DNVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEK--QEWKVISSPNSPPPRSAHQAVSWKNYLY 138 (602)
Q Consensus 61 ~~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~--~~W~~l~~~~~P~~R~~hs~~~~~~~iy 138 (602)
..+..|.+--+-+-..+ ++.+||-=|. .-...|..|+.. ..|+.++..+ -.+|....+++++++||
T Consensus 29 ~lPdlPvg~KnG~Ga~i---g~~~YVGLGs--------~G~afy~ldL~~~~k~W~~~a~Fp-G~~rnqa~~a~~~~kLy 96 (381)
T COG3055 29 QLPDLPVGFKNGAGALI---GDTVYVGLGS--------AGTAFYVLDLKKPGKGWTKIADFP-GGARNQAVAAVIGGKLY 96 (381)
T ss_pred cCCCCCcccccccccee---cceEEEEecc--------CCccceehhhhcCCCCceEcccCC-CcccccchheeeCCeEE
Confidence 44566766665566666 6788876552 124667777765 4799998754 36899999999999999
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECC-EEEEEcCccCC----------------
Q 007468 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDT---------------- 201 (602)
Q Consensus 139 V~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~-~Lyv~GG~~~~---------------- 201 (602)
||||...... .....++++|+||+.+++|.++... .|....+|.++.+++ +||++||.+..
T Consensus 97 vFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~ 174 (381)
T COG3055 97 VFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDK 174 (381)
T ss_pred EeeccccCCC-CCceEeeeeEEecCCCChhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccH
Confidence 9999866554 3456899999999999999999874 388889999999987 99999997522
Q ss_pred --------------CCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCC
Q 007468 202 --------------LREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEK 267 (602)
Q Consensus 202 --------------~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~ 267 (602)
..+..+...|+.|+|.+++|+.+...| -.++++++++.-++.|.++-|.-..
T Consensus 175 ~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p----f~~~aGsa~~~~~n~~~lInGEiKp---------- 240 (381)
T COG3055 175 EAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP----FYGNAGSAVVIKGNKLTLINGEIKP---------- 240 (381)
T ss_pred HHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc----ccCccCcceeecCCeEEEEcceecC----------
Confidence 111336778999999999999987663 3677886665568889999887665
Q ss_pred CceeeeEEEEeCC--CCeeEEeecCCCCCC----CCceeEEEEECCeEEEeccccccccccc----------cccccccC
Q 007468 268 GIIHSDLWSLDPR--TWEWSKVKKIGMPPG----PRAGFSMCVHKKRALLFGGVVDMEMKGD----------VIMSLFLN 331 (602)
Q Consensus 268 ~~~~~dv~~yd~~--t~~W~~l~~~g~~P~----~R~~~s~~~~~~~lyv~GG~~~~~~~~~----------~~~~~~~n 331 (602)
+.....+++++.. .-+|..+.....++. .-+++-.-..++.+++.||.+-.+.... .+.-.+.+
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 5566677777765 558999976522221 1122222334788999998765442211 23456778
Q ss_pred eeEEEECCCCceEEeEe
Q 007468 332 ELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 332 dv~~yd~~t~~W~~l~~ 348 (602)
+||+|| ++.|..+..
T Consensus 321 ~Vy~~d--~g~Wk~~Ge 335 (381)
T COG3055 321 EVYIFD--NGSWKIVGE 335 (381)
T ss_pred eEEEEc--CCceeeecc
Confidence 899998 889987665
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.70 E-value=4.4e-16 Score=156.30 Aligned_cols=257 Identities=20% Similarity=0.278 Sum_probs=181.8
Q ss_pred ccCCCC-CCCcceEEEEecCCCCEEEEEcceecCC-CCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECC-EE
Q 007468 61 DNVPAP-SPRSNCSLNINPLKETELILYGGEFYNG-NKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKN-YL 137 (602)
Q Consensus 61 ~~~~~P-~~R~~~s~~~~~~~~~~iyv~GG~~~~g-~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~-~i 137 (602)
.....| .+|.+...+++ +++||||||..-.. .....++++|+|||.+++|.++.... |....+|+++.+++ .|
T Consensus 74 ~~a~FpG~~rnqa~~a~~---~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~~~~~i 149 (381)
T COG3055 74 KIADFPGGARNQAVAAVI---GGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSLNGTKI 149 (381)
T ss_pred EcccCCCcccccchheee---CCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccccceeEecCCceE
Confidence 334344 57888888888 89999999974332 23568999999999999999998654 67788999999977 99
Q ss_pred EEEeCccCCCCC----------------------------CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEEC
Q 007468 138 YIFGGEFTSPNQ----------------------------ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189 (602)
Q Consensus 138 yV~GG~~~~~~~----------------------------~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~ 189 (602)
|++||.+..... ..+.....++.|++.++.|+.+... .-.++++++.+.-+
T Consensus 150 ~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~-pf~~~aGsa~~~~~ 228 (381)
T COG3055 150 YFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN-PFYGNAGSAVVIKG 228 (381)
T ss_pred EEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC-cccCccCcceeecC
Confidence 999996432111 1123467899999999999998753 24677886666668
Q ss_pred CEEEEEcCccCCCCCeeeeceEEEEECC--CCceEEeccCCCCC--CCCCccceeEEEeCCEEEEEcCccCCCCCccC--
Q 007468 190 HKIIVFGGFYDTLREVRYYNDLYVFDLD--QFKWQEIKPRFGSM--WPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKN-- 263 (602)
Q Consensus 190 ~~Lyv~GG~~~~~~~~~~~~~v~~yd~~--t~~W~~v~~~~~~~--~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~-- 263 (602)
++|.+|-|.-..+. .+..+++++.. ..+|..+...|... -+....|+-.-..++.+.|.||.... ....
T Consensus 229 n~~~lInGEiKpGL---Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~--Ga~~~y 303 (381)
T COG3055 229 NKLTLINGEIKPGL---RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFP--GALKAY 303 (381)
T ss_pred CeEEEEcceecCCc---cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCCh--hHHHHH
Confidence 88999988754332 35566777665 46799997774211 11233333334448899999997543 1111
Q ss_pred --------CCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEE
Q 007468 264 --------QSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYG 335 (602)
Q Consensus 264 --------~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~ 335 (602)
......++++||.|| .+.|..+ |.+|.++++..++..++.||++||..... ..+..|+.
T Consensus 304 ~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn~vl~IGGE~~~G--------ka~~~v~~ 370 (381)
T COG3055 304 KNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNNKVLLIGGETSGG--------KATTRVYS 370 (381)
T ss_pred HhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCCcEEEEccccCCC--------eeeeeEEE
Confidence 112235778999998 8999998 45588888888888999999999987643 44566666
Q ss_pred EECCC
Q 007468 336 FQLDN 340 (602)
Q Consensus 336 yd~~t 340 (602)
+-...
T Consensus 371 l~~~g 375 (381)
T COG3055 371 LSWDG 375 (381)
T ss_pred EEEcC
Confidence 65443
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.62 E-value=3.1e-16 Score=162.09 Aligned_cols=167 Identities=23% Similarity=0.464 Sum_probs=131.9
Q ss_pred CCcEEEcccCC--------CCCCCcccEEEEECC--EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 165 TNQWEQLNLKG--------CPSPRSGHRMVLYKH--KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 165 t~~W~~~~~~~--------~p~~R~~h~~~~~~~--~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
+-.|.++++.. -|..|.||.||.-.+ +||++||+++.. -+.++|.|+...+.|+.+..- +..|-
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~----~l~DFW~Y~v~e~~W~~iN~~--t~~PG 311 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ----DLADFWAYSVKENQWTCINRD--TEGPG 311 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch----hHHHHHhhcCCcceeEEeecC--CCCCc
Confidence 45798887654 288999999999855 999999998743 489999999999999999776 45699
Q ss_pred CccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC---CCCCCCceeEEEEECCe-
Q 007468 235 PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG---MPPGPRAGFSMCVHKKR- 308 (602)
Q Consensus 235 ~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g---~~P~~R~~~s~~~~~~~- 308 (602)
.|++|-|+.. ..+||+.|-|-...... ....-.|+|+||+.++.|..+.-.. --|..-+.|.|++.+.+
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~-----~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~ 386 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRN-----SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKH 386 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhcccccccc-----ccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcc
Confidence 9999999988 55999999987651111 1134578999999999999984321 12677889999999777
Q ss_pred -EEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 309 -ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 309 -lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
||||||+.-... ...+.-+|.||.....|..+..
T Consensus 387 ~iyVfGGr~~~~~------e~~f~GLYaf~~~~~~w~~l~e 421 (723)
T KOG2437|consen 387 MIYVFGGRILTCN------EPQFSGLYAFNCQCQTWKLLRE 421 (723)
T ss_pred eEEEecCeeccCC------CccccceEEEecCCccHHHHHH
Confidence 999999865332 2346789999999999987765
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.04 E-value=4.3e-10 Score=83.82 Aligned_cols=50 Identities=42% Similarity=0.591 Sum_probs=44.9
Q ss_pred CceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC
Q 007468 124 PRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (602)
Q Consensus 124 ~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R 180 (602)
||.+|++++++++|||+||.... ...++++++||+.+++|+++++ ||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~--mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPP--MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCC--CCCCC
Confidence 69999999999999999999774 2368999999999999999988 88887
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.02 E-value=5.7e-10 Score=83.16 Aligned_cols=50 Identities=40% Similarity=0.833 Sum_probs=44.8
Q ss_pred CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCc
Q 007468 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R 236 (602)
||.+|++++++++||||||.... ..+++++++||+.+++|+.++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m-----p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM-----PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC-----CCCC
Confidence 69999999999999999999774 33689999999999999999988 7776
No 33
>PLN02772 guanylate kinase
Probab=98.87 E-value=1e-08 Score=107.49 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=77.0
Q ss_pred CCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEE
Q 007468 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (602)
Q Consensus 233 P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv 311 (602)
+.|+.+|+++++++++||+||.+.. +...+.+|+||+.+++|......|.+|.||.+|+++++ +++|+|
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~----------~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEG----------NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCC----------ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEE
Confidence 5689999999999999999997765 34788999999999999999999999999999999999 689999
Q ss_pred eccccccccccccccccccCeeEEEECCCC
Q 007468 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 312 ~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
+++.... -.++|.+.++|-
T Consensus 92 ~~~~~~~-----------~~~~w~l~~~t~ 110 (398)
T PLN02772 92 IKKGSAP-----------DDSIWFLEVDTP 110 (398)
T ss_pred EeCCCCC-----------ccceEEEEcCCH
Confidence 9987542 367899888764
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.82 E-value=1e-08 Score=75.99 Aligned_cols=49 Identities=39% Similarity=0.748 Sum_probs=41.6
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY 188 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~ 188 (602)
+++||||||..... ...++++|+||+.+++|+++.. +|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~----~~~~nd~~~~~~~~~~W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG----GTRLNDVWVFDLDTNTWTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC----CCEecCEEEEECCCCEEEECCC--CCCCccceEEEEC
Confidence 57899999998422 2368999999999999999955 7999999999874
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.79 E-value=1.3e-08 Score=75.43 Aligned_cols=49 Identities=43% Similarity=0.727 Sum_probs=41.3
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY 244 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~ 244 (602)
+++||||||.... ....++++|+||+.+.+|+++... |.||++|+++++
T Consensus 1 g~~~~vfGG~~~~--~~~~~nd~~~~~~~~~~W~~~~~~-----P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDD--GGTRLNDVWVFDLDTNTWTRIGDL-----PPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCC--CCCEecCEEEEECCCCEEEECCCC-----CCCccceEEEEC
Confidence 5799999999841 244789999999999999999555 899999999874
No 36
>PF13854 Kelch_5: Kelch motif
Probab=98.77 E-value=3.8e-09 Score=75.56 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=36.0
Q ss_pred CCccCcccceeeecCeEEEEeceEEecCeeeeecchhhcccCC
Q 007468 450 KPCGRINSCMVVGKDTLYVYGGMMEINDQEITLDDLYSLNLSK 492 (602)
Q Consensus 450 ~P~~R~~~~~~v~~~~lyv~GG~~e~g~~~~~l~Dl~~ldl~~ 492 (602)
.|+||.+|+++++++.||||||... .....++|+|+|||.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCC
Confidence 3999999999999999999999984 3446799999999975
No 37
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.76 E-value=3.3e-07 Score=90.07 Aligned_cols=235 Identities=17% Similarity=0.195 Sum_probs=135.0
Q ss_pred cCCCCCCCcceEEEE-ecCCC--CEEEEEcceecCCCCceeeCcEEEEEcCCCcE-EEe--------cCCCCCCCceeeE
Q 007468 62 NVPAPSPRSNCSLNI-NPLKE--TELILYGGEFYNGNKTYVYGDLYRYDVEKQEW-KVI--------SSPNSPPPRSAHQ 129 (602)
Q Consensus 62 ~~~~P~~R~~~s~~~-~~~~~--~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W-~~l--------~~~~~P~~R~~hs 129 (602)
.+-.|+.|.-+.+.+ -|..+ ...+|-||...|. ...+.+|+....+..- +++ -.+..|.+|++|+
T Consensus 16 SCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNN---ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt 92 (337)
T PF03089_consen 16 SCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNN---ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHT 92 (337)
T ss_pred cccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCc---ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccce
Confidence 345777777666655 22211 2356778875444 3778899887765431 111 1255799999999
Q ss_pred EEEE----CCEEEEEeCccCCCCCC--------cceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcC
Q 007468 130 AVSW----KNYLYIFGGEFTSPNQE--------RFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGG 197 (602)
Q Consensus 130 ~~~~----~~~iyV~GG~~~~~~~~--------~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG 197 (602)
+.++ +..+++|||+..-+..+ ...+.-.|+.+|+..+..+....+.+..+.+.|.+.+-++.+|++||
T Consensus 93 ~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGG 172 (337)
T PF03089_consen 93 INVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGG 172 (337)
T ss_pred EEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEcc
Confidence 9888 34588999975433221 11245568999999998876665446778899999999999999999
Q ss_pred ccCCCCCeeeeceEEEEECCC---CceEEeccCCCCCCCCCccceeEEEe---CCEEEEEcCccCCCCCccCCCCCCcee
Q 007468 198 FYDTLREVRYYNDLYVFDLDQ---FKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLYGGYSKEVSTDKNQSEKGIIH 271 (602)
Q Consensus 198 ~~~~~~~~~~~~~v~~yd~~t---~~W~~v~~~~~~~~P~~R~~~~~~~~---~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 271 (602)
..-... .....++++..+- .-+-..... +...+-.++.+. .+..+|+|||.....+...++....-.
T Consensus 173 Hsl~sd--~Rpp~l~rlkVdLllGSP~vsC~vl-----~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd 245 (337)
T PF03089_consen 173 HSLESD--SRPPRLYRLKVDLLLGSPAVSCTVL-----QGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDD 245 (337)
T ss_pred EEccCC--CCCCcEEEEEEeecCCCceeEEEEC-----CCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeC
Confidence 864321 1233455553321 112222233 333443344333 578899999976611111011000001
Q ss_pred eeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEE
Q 007468 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALL 311 (602)
Q Consensus 272 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv 311 (602)
+.|.+-...+-.|+. .....|..|+..+-++.++|
T Consensus 246 ~~I~ie~~E~P~Wt~-----dI~hSrtWFGgs~G~G~~Li 280 (337)
T PF03089_consen 246 DGIHIEEREPPEWTG-----DIKHSRTWFGGSMGKGSALI 280 (337)
T ss_pred CceEeccCCCCCCCC-----CcCcCccccccccCCceEEE
Confidence 112222234556653 23456777776666665444
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.74 E-value=1.8e-08 Score=73.81 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=41.3
Q ss_pred CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
||++|++++++++||||||+... ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 69999999999999999999872 34799999999999999999987
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.72 E-value=2.8e-08 Score=73.68 Aligned_cols=48 Identities=40% Similarity=0.706 Sum_probs=40.9
Q ss_pred CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
||++|++++++++||||||+.. .....+.+++++||+.+.+|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~-~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGT-DNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCccc-CCCCcccceeEEEECCCCEEeecCCC
Confidence 6999999999999999999911 11244789999999999999999876
No 40
>PLN02772 guanylate kinase
Probab=98.72 E-value=6.5e-08 Score=101.57 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=75.5
Q ss_pred CCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCcc
Q 007468 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYS 255 (602)
Q Consensus 177 p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~ 255 (602)
+.++..|+++.+++++|||||.+... ...+.|++||+.|.+|...... |..|.||.||+++++ +++|+|+++..
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~--G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVL--GTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEeccccc--CCCCCCCCcceEEEECCceEEEEeCCC
Confidence 56899999999999999999987632 2579999999999999998877 778999999999999 89999999875
Q ss_pred CCCCCccCCCCCCceeeeEEEEeCCCC
Q 007468 256 KEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (602)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (602)
.. ..++|.+.+.|.
T Consensus 97 ~~-------------~~~~w~l~~~t~ 110 (398)
T PLN02772 97 AP-------------DDSIWFLEVDTP 110 (398)
T ss_pred CC-------------ccceEEEEcCCH
Confidence 43 377999987653
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.69 E-value=2.9e-08 Score=73.50 Aligned_cols=45 Identities=42% Similarity=0.845 Sum_probs=30.5
Q ss_pred CceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEccc
Q 007468 124 PRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (602)
Q Consensus 124 ~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 173 (602)
||++|+++.+ ++.||||||..... ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-----~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-----SPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-----EE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-----cccCCEEEEECCCCEEEECCC
Confidence 6999999999 58999999998753 478999999999999999965
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.68 E-value=4.2e-08 Score=72.71 Aligned_cols=48 Identities=27% Similarity=0.774 Sum_probs=40.8
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (602)
||++|++++++++||||||+... ......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~--------~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTD--------NGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccC--------CCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999111 1247889999999999999999875
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.68 E-value=2.8e-08 Score=73.59 Aligned_cols=46 Identities=35% Similarity=0.646 Sum_probs=31.3
Q ss_pred CCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 179 ~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
||++|+++.+ +++||||||..... ..++++|+||+.+++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCC
Confidence 6999999999 58999999998643 4799999999999999999666
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.68 E-value=5e-08 Score=71.47 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=41.6
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (602)
||++|++++++++|||+||+... ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~----------~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN----------NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST----------SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc----------CceeeeEEEEeCCCCEEEEcCCC
Confidence 68999999999999999999873 47899999999999999999875
No 45
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.59 E-value=2e-06 Score=84.76 Aligned_cols=178 Identities=19% Similarity=0.212 Sum_probs=105.0
Q ss_pred CCCCceeeEEEEEC------CEEEEEeCccCCCCCCcceecCeEEEEECCCCc--------EEEcccCC-CCCCCcccEE
Q 007468 121 SPPPRSAHQAVSWK------NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--------WEQLNLKG-CPSPRSGHRM 185 (602)
Q Consensus 121 ~P~~R~~hs~~~~~------~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~--------W~~~~~~~-~p~~R~~h~~ 185 (602)
+|+.|+-..+..-+ ...+|.||...+.. ..+.+|++...+.. ......-| .|.+|++|++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE-----lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~ 93 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE-----LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTI 93 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc-----cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceE
Confidence 56777766555521 34667799876644 36677777665432 12111111 3999999999
Q ss_pred EEE----CCEEEEEcCccCCCCCee----------eeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEE
Q 007468 186 VLY----KHKIIVFGGFYDTLREVR----------YYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLY 251 (602)
Q Consensus 186 ~~~----~~~Lyv~GG~~~~~~~~~----------~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~ 251 (602)
-++ +...++|||........+ ....|+.+|++-+..+..... .+-.+.+.|.+.+-++.+|++
T Consensus 94 ~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp---El~dG~SFHvslar~D~VYil 170 (337)
T PF03089_consen 94 NVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP---ELQDGQSFHVSLARNDCVYIL 170 (337)
T ss_pred EEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch---hhcCCeEEEEEEecCceEEEE
Confidence 887 235889999864321111 334678888888776654332 234577888888889999999
Q ss_pred cCccCCCCCccCCCCCCceeeeEEEEeCCC---CeeEEeecCCCCCCCCceeEEEEE---CCeEEEecccccc
Q 007468 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRT---WEWSKVKKIGMPPGPRAGFSMCVH---KKRALLFGGVVDM 318 (602)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t---~~W~~l~~~g~~P~~R~~~s~~~~---~~~lyv~GG~~~~ 318 (602)
||..-. ....-..++++.+.- .-+..... ++...+-.++++. .+..+|+||+...
T Consensus 171 GGHsl~---------sd~Rpp~l~rlkVdLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 171 GGHSLE---------SDSRPPRLYRLKVDLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred ccEEcc---------CCCCCCcEEEEEEeecCCCceeEEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 998754 112333455554221 11111111 1333344444443 4678999999654
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.56 E-value=1.7e-07 Score=67.03 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=35.5
Q ss_pred CCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC
Q 007468 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN 166 (602)
Q Consensus 121 ~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~ 166 (602)
.|.+|++|++++++++||||||..... ...++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~----~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNN----NSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCC----CCEECcEEEEECCCC
Confidence 478999999999999999999998511 246899999999764
No 47
>smart00612 Kelch Kelch domain.
Probab=98.31 E-value=9.6e-07 Score=64.14 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=40.0
Q ss_pred EEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECC
Q 007468 247 EVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKK 307 (602)
Q Consensus 247 ~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~ 307 (602)
+|||+||+... ..++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 48999998643 5678999999999999999865 88999999988764
No 48
>smart00612 Kelch Kelch domain.
Probab=98.27 E-value=1.2e-06 Score=63.58 Aligned_cols=47 Identities=34% Similarity=0.589 Sum_probs=39.9
Q ss_pred EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCC
Q 007468 191 KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQD 246 (602)
Q Consensus 191 ~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~ 246 (602)
+|||+||+.. ...++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~-----~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG----GQRLKSVEVYDPETNKWTPLPSM-----PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC----CceeeeEEEECCCCCeEccCCCC-----CCccccceEEEeCC
Confidence 4899999864 23578999999999999999887 88999999988753
No 49
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.24 E-value=0.00026 Score=70.34 Aligned_cols=204 Identities=15% Similarity=0.212 Sum_probs=114.9
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceee--EEEEEC----C-EEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEccc
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAH--QAVSWK----N-YLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNL 173 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~h--s~~~~~----~-~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~ 173 (602)
..++++||.|.+|..++.+..|...... .+..++ . +|+.+...... .....+.+|++.+++|+.+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC------CCCccEEEEEeCCCCcccccc
Confidence 4789999999999999764322111111 111121 1 34444322111 012468899999999999874
Q ss_pred CCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEE-eccCCCCCCCCCccceeEEEeCCEEEEEc
Q 007468 174 KGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (602)
Q Consensus 174 ~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~-v~~~~~~~~P~~R~~~~~~~~~~~Iyv~G 252 (602)
.. +........+.+++.||-+.-..... ....+..||+.+.+|.. ++... . ..........+.++++|.++.
T Consensus 88 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~~P~-~-~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 88 SP-PHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIPLPC-G-NSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CC-CCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeeecCc-c-ccccccceEEEEECCEEEEEE
Confidence 22 21122223778899999886432211 11269999999999995 54321 0 001122345566689988876
Q ss_pred CccCCCCCccCCCCCCceeeeEEEEe-CCCCeeEEeecCCCCCCCCce----eEEEEECCeEEEeccccccccccccccc
Q 007468 253 GYSKEVSTDKNQSEKGIIHSDLWSLD-PRTWEWSKVKKIGMPPGPRAG----FSMCVHKKRALLFGGVVDMEMKGDVIMS 327 (602)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd-~~t~~W~~l~~~g~~P~~R~~----~s~~~~~~~lyv~GG~~~~~~~~~~~~~ 327 (602)
..... ..-+||+++ -....|+++-....++.++.. ...+..++.|++......
T Consensus 161 ~~~~~------------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---------- 218 (230)
T TIGR01640 161 QKKDT------------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---------- 218 (230)
T ss_pred ecCCC------------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC----------
Confidence 64321 114699986 445679987544332222221 234455788887654210
Q ss_pred cccCeeEEEECCCC
Q 007468 328 LFLNELYGFQLDNH 341 (602)
Q Consensus 328 ~~~ndv~~yd~~t~ 341 (602)
..-+..||+.++
T Consensus 219 --~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 --PFYIFYYNVGEN 230 (230)
T ss_pred --ceEEEEEeccCC
Confidence 113888998764
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.13 E-value=0.00011 Score=73.22 Aligned_cols=150 Identities=12% Similarity=0.145 Sum_probs=94.2
Q ss_pred EEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCC----CcEEEcccCCCCC
Q 007468 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKT----NQWEQLNLKGCPS 178 (602)
Q Consensus 103 v~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t----~~W~~~~~~~~p~ 178 (602)
-..||+.+++++.+.... -.-++..+..-++.++++||.... ...+..|++.+ ..|...... |-.
T Consensus 48 s~~yD~~tn~~rpl~v~t--d~FCSgg~~L~dG~ll~tGG~~~G--------~~~ir~~~p~~~~~~~~w~e~~~~-m~~ 116 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT--DTFCSGGAFLPDGRLLQTGGDNDG--------NKAIRIFTPCTSDGTCDWTESPND-MQS 116 (243)
T ss_pred EEEEecCCCcEEeccCCC--CCcccCcCCCCCCCEEEeCCCCcc--------ccceEEEecCCCCCCCCceECccc-ccC
Confidence 457999999999886532 222333333337899999998653 34566777765 579887643 788
Q ss_pred CCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCC-----CceEEeccCCCCCCCCCccceeEEEeCCEEEEEc
Q 007468 179 PRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-----FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (602)
Q Consensus 179 ~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-----~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~G 252 (602)
+|.+.+++.+ +++++|+||... ...+.|.... ..|..+.... ...+...+=+..+.-+++|||++
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~--------~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNN--------PTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred CCccccceECCCCCEEEEeCcCC--------CcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEEE
Confidence 9999988887 789999999752 1233333211 1222222210 01133333333444499999999
Q ss_pred CccCCCCCccCCCCCCceeeeEEEEeCCCCee-EEeecC
Q 007468 253 GYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW-SKVKKI 290 (602)
Q Consensus 253 G~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W-~~l~~~ 290 (602)
... ..+||+.++++ ..++.+
T Consensus 188 n~~------------------s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 188 NRG------------------SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred cCC------------------cEEEeCCCCeEEeeCCCC
Confidence 865 34789999977 555544
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.04 E-value=0.00015 Score=72.20 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=94.6
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCC----CceEEeccCCCC
Q 007468 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ----FKWQEIKPRFGS 230 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t----~~W~~v~~~~~~ 230 (602)
...-..||+.+++++.+...- -.-.++| ++.-+++++++||.... ...+..|++.+ ..|......
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t-d~FCSgg-~~L~dG~ll~tGG~~~G------~~~ir~~~p~~~~~~~~w~e~~~~--- 113 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT-DTFCSGG-AFLPDGRLLQTGGDNDG------NKAIRIFTPCTSDGTCDWTESPND--- 113 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC-CCcccCc-CCCCCCCEEEeCCCCcc------ccceEEEecCCCCCCCCceECccc---
Confidence 344568999999999886521 2222232 23348899999998663 34566777754 568876542
Q ss_pred CCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC------CCeeEEeecCC-CCCCCCceeEE
Q 007468 231 MWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR------TWEWSKVKKIG-MPPGPRAGFSM 302 (602)
Q Consensus 231 ~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~------t~~W~~l~~~g-~~P~~R~~~s~ 302 (602)
+-.+|.+.+++.+ +++++|+||.... .+.|-|. ...|..+.... ..+..-+-+..
T Consensus 114 -m~~~RWYpT~~~L~DG~vlIvGG~~~~----------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ 176 (243)
T PF07250_consen 114 -MQSGRWYPTATTLPDGRVLIVGGSNNP----------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVH 176 (243)
T ss_pred -ccCCCccccceECCCCCEEEEeCcCCC----------------cccccCCccCCCCceeeecchhhhccCccccCceEE
Confidence 3789999999888 9999999998643 2223222 12233232211 11222222344
Q ss_pred EEECCeEEEeccccccccccccccccccCeeEEEECCCCce-EEeEe
Q 007468 303 CVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRW-YPLEL 348 (602)
Q Consensus 303 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W-~~l~~ 348 (602)
..-+++||+|+... -.+||+.++++ +.++.
T Consensus 177 llPdG~lFi~an~~----------------s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 177 LLPDGNLFIFANRG----------------SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred EcCCCCEEEEEcCC----------------cEEEeCCCCeEEeeCCC
Confidence 44489999998753 57889999977 56665
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.49 E-value=0.042 Score=59.20 Aligned_cols=187 Identities=15% Similarity=0.162 Sum_probs=105.5
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
+++||+.+. ...+++||..++ .|+.-.... ...+-++.++.+|+..+ ...+
T Consensus 120 ~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~~-----~~ssP~v~~~~v~v~~~------------~g~l 172 (394)
T PRK11138 120 GGKVYIGSE----------KGQVYALNAEDGEVAWQTKVAGE-----ALSRPVVSDGLVLVHTS------------NGML 172 (394)
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCCcccccCCCc-----eecCCEEECCEEEEECC------------CCEE
Confidence 677776433 247899999876 587543211 12223455788887533 1458
Q ss_pred EEEECCCCc--EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC--ceEEeccCCCCCCCC
Q 007468 159 WMLDLKTNQ--WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (602)
Q Consensus 159 ~~yd~~t~~--W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~~~P~ 234 (602)
+.||+.+.+ |+.-...+....+...+-++.++.+|+..+ ...++.+|+.+. .|+.-...+.+....
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~----------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD----------NGRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC----------CCEEEEEEccCChhhheeccccCCCccch
Confidence 899998875 876533111111222233455677766433 245788888875 487532221110000
Q ss_pred Cc---cceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecCCCCCCCCceeEEEEECCeE
Q 007468 235 PR---SGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (602)
Q Consensus 235 ~R---~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~~~s~~~~~~~l 309 (602)
.| ...+-++.++.||+.+. .+ .++++|+.+. .|+.-. + .+ ...++.+++|
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~-~g----------------~l~ald~~tG~~~W~~~~--~---~~---~~~~~~~~~v 297 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAY-NG----------------NLVALDLRSGQIVWKREY--G---SV---NDFAVDGGRI 297 (394)
T ss_pred hcccccCCCcEEECCEEEEEEc-CC----------------eEEEEECCCCCEEEeecC--C---Cc---cCcEEECCEE
Confidence 01 12233456888887653 22 3889998765 587632 1 11 1346678999
Q ss_pred EEeccccccccccccccccccCeeEEEECCCC--ceE
Q 007468 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWY 344 (602)
Q Consensus 310 yv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~--~W~ 344 (602)
|+.... ..|+++|+.+. .|+
T Consensus 298 y~~~~~---------------g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 298 YLVDQN---------------DRVYALDTRGGVELWS 319 (394)
T ss_pred EEEcCC---------------CeEEEEECCCCcEEEc
Confidence 987532 45999998876 464
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.45 E-value=0.035 Score=59.80 Aligned_cols=193 Identities=12% Similarity=0.066 Sum_probs=108.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCC------CCCCceeeEEEEECCEEEEEeCccCCCCCCcc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN------SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~------~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~ 152 (602)
+++||+.+.. ..+++||..++ .|+.-.... .+.++...+.++.++.||+.+.
T Consensus 69 ~~~vy~~~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------- 128 (394)
T PRK11138 69 YNKVYAADRA----------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------- 128 (394)
T ss_pred CCEEEEECCC----------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------
Confidence 7888887652 36899998866 587532210 0012333345666888887432
Q ss_pred eecCeEEEEECCCC--cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEeccCC
Q 007468 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRF 228 (602)
Q Consensus 153 ~~~~dv~~yd~~t~--~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~~~ 228 (602)
...++.||..+. .|+.-.. .+ ...+-++.++.+|+..+ ...++.||+.+.+ |+.-...+
T Consensus 129 --~g~l~ald~~tG~~~W~~~~~--~~---~~ssP~v~~~~v~v~~~----------~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 129 --KGQVYALNAEDGEVAWQTKVA--GE---ALSRPVVSDGLVLVHTS----------NGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred --CCEEEEEECCCCCCcccccCC--Cc---eecCCEEECCEEEEECC----------CCEEEEEEccCCCEeeeecCCCC
Confidence 145889998876 5876432 11 11223556888887543 2469999998865 87754321
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecC--CCCCCCC---ceeE
Q 007468 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFS 301 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~--g~~P~~R---~~~s 301 (602)
. ...+...+-++.++.+|+..+ .+ .++.+|+.+. .|+.-... +.....| ...+
T Consensus 192 ~---~~~~~~~sP~v~~~~v~~~~~-~g----------------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 192 S---LTLRGESAPATAFGGAIVGGD-NG----------------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred c---ccccCCCCCEEECCEEEEEcC-CC----------------EEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 0 111222233445677776433 22 2677887654 57653211 0000001 1234
Q ss_pred EEEECCeEEEeccccccccccccccccccCeeEEEECCCC--ceEE
Q 007468 302 MCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (602)
Q Consensus 302 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~--~W~~ 345 (602)
-++.++.+|+.+.. ..++++|+.+. .|+.
T Consensus 252 P~v~~~~vy~~~~~---------------g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 252 PVVVGGVVYALAYN---------------GNLVALDLRSGQIVWKR 282 (394)
T ss_pred cEEECCEEEEEEcC---------------CeEEEEECCCCCEEEee
Confidence 45668888875421 35899999876 4864
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.24 E-value=0.14 Score=54.60 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=95.8
Q ss_pred CcEEEEEcCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCC
Q 007468 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC 176 (602)
Q Consensus 101 ~dv~~yd~~~~--~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~ 176 (602)
..+++||+.++ .|+.-... ....+.++.++.+|+..+ ...++.||+.+. .|+.......
T Consensus 115 g~l~ald~~tG~~~W~~~~~~-----~~~~~p~v~~~~v~v~~~------------~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSS-----EVLSPPLVANGLVVVRTN------------DGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred CEEEEEECCCCcEeeeeccCc-----eeecCCEEECCEEEEECC------------CCeEEEEEcCCCceeeEEccCCCc
Confidence 36888998766 47744221 112233445677776532 135889998876 4876433111
Q ss_pred CCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC--ceEEeccCCCCCCCCCc---cceeEEEeCCEEEEE
Q 007468 177 PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPR---SGFQFFVYQDEVFLY 251 (602)
Q Consensus 177 p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~~~P~~R---~~~~~~~~~~~Iyv~ 251 (602)
...+...+.++.++.+| +|.. ...++.+|+.+. .|+.-...+.+.....| ...+.++.++.||+.
T Consensus 178 ~~~~~~~sp~~~~~~v~-~~~~---------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~ 247 (377)
T TIGR03300 178 LTLRGSASPVIADGGVL-VGFA---------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV 247 (377)
T ss_pred eeecCCCCCEEECCEEE-EECC---------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE
Confidence 11122334455676555 4332 136889998775 48653222111000011 122334457888875
Q ss_pred cCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccc
Q 007468 252 GGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLF 329 (602)
Q Consensus 252 GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 329 (602)
.. .+ .+++||+.+. .|..-. + ...+.++.+++||+....
T Consensus 248 ~~-~g----------------~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~~-------------- 288 (377)
T TIGR03300 248 SY-QG----------------RVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDAD-------------- 288 (377)
T ss_pred Ec-CC----------------EEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECCC--------------
Confidence 43 22 3888998764 576531 1 122345668888886421
Q ss_pred cCeeEEEECCCC--ceEE
Q 007468 330 LNELYGFQLDNH--RWYP 345 (602)
Q Consensus 330 ~ndv~~yd~~t~--~W~~ 345 (602)
..|+++|+.+. .|..
T Consensus 289 -G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 289 -GVVVALDRRSGSELWKN 305 (377)
T ss_pred -CeEEEEECCCCcEEEcc
Confidence 45999998776 4764
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.20 E-value=0.026 Score=55.96 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=93.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCC-Cccc-EEEEEC----C-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSP-RSGH-RMVLYK----H-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~-R~~h-~~~~~~----~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
..+.++||.|.+|..+++...+.. ...+ .+..++ . +++.+...... .....+++|++.++.|+.+...+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~~Vys~~~~~Wr~~~~~~ 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEHQVYTLGSNSWRTIECSP 89 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccEEEEEeCCCCccccccCC
Confidence 358899999999999986322111 1111 111121 1 45544332110 12357899999999999987542
Q ss_pred CCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEE-eecCCCCCCCC----ceeEEE
Q 007468 229 GSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK-VKKIGMPPGPR----AGFSMC 303 (602)
Q Consensus 229 ~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~-l~~~g~~P~~R----~~~s~~ 303 (602)
+........+.+++.||-+.-.... .....|..||+.+.+|.. ++. |..+ ....++
T Consensus 90 ----~~~~~~~~~v~~~G~lyw~~~~~~~-----------~~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 90 ----PHHPLKSRGVCINGVLYYLAYTLKT-----------NPDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLI 150 (230)
T ss_pred ----CCccccCCeEEECCEEEEEEEECCC-----------CCcEEEEEEEcccceEeeeeec----CccccccccceEEE
Confidence 1111122256679999988743321 111259999999999995 542 3222 234566
Q ss_pred EECCeEEEeccccccccccccccccccCeeEEEE-CCCCceEEeEe
Q 007468 304 VHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ-LDNHRWYPLEL 348 (602)
Q Consensus 304 ~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd-~~t~~W~~l~~ 348 (602)
.++++|.++...... ..-+||+++ .....|+++-.
T Consensus 151 ~~~G~L~~v~~~~~~----------~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 151 NYKGKLAVLKQKKDT----------NNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred EECCEEEEEEecCCC----------CcEEEEEECCCCCCceeEEEE
Confidence 678988887654220 014688886 44667997554
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.19 E-value=0.27 Score=48.35 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=108.7
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~--W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.+|+..+ ...+++||+.+++ |+.-.. . +.....+..++.||+..+. +.+
T Consensus 36 ~~~v~~~~~----------~~~l~~~d~~tG~~~W~~~~~----~-~~~~~~~~~~~~v~v~~~~------------~~l 88 (238)
T PF13360_consen 36 GGRVYVASG----------DGNLYALDAKTGKVLWRFDLP----G-PISGAPVVDGGRVYVGTSD------------GSL 88 (238)
T ss_dssp TTEEEEEET----------TSEEEEEETTTSEEEEEEECS----S-CGGSGEEEETTEEEEEETT------------SEE
T ss_pred CCEEEEEcC----------CCEEEEEECCCCCEEEEeecc----c-cccceeeecccccccccce------------eee
Confidence 788888743 2589999998774 765432 1 2222246778999888631 368
Q ss_pred EEEECCCC--cEEE-cccCCCCC-CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEeccCCCCCC
Q 007468 159 WMLDLKTN--QWEQ-LNLKGCPS-PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMW 232 (602)
Q Consensus 159 ~~yd~~t~--~W~~-~~~~~~p~-~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~ 232 (602)
+.||..+. .|+. .... .+. .+.....++.++.+|+... ...++++|+.+.+ |..-...+.+..
T Consensus 89 ~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS----------SGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET----------CSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred EecccCCcceeeeeccccc-cccccccccCceEecCEEEEEec----------cCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 89998777 5984 4331 122 2334445555777776653 2578999998765 877554311100
Q ss_pred CC---CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeecCCCCCCCCceeEEEEECC
Q 007468 233 PS---PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVHKK 307 (602)
Q Consensus 233 P~---~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~~s~~~~~~ 307 (602)
+. .......++.++.||+..+... +..+|..+.. |+.. ..+ ........++
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~ 213 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGR-----------------VVAVDLATGEKLWSKP-ISG------IYSLPSVDGG 213 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSS-----------------EEEEETTTTEEEEEEC-SS-------ECECEECCCT
T ss_pred ceeeecccccceEEECCEEEEEcCCCe-----------------EEEEECCCCCEEEEec-CCC------ccCCceeeCC
Confidence 00 0112233334678888776531 5666888876 8443 211 1112344567
Q ss_pred eEEEeccccccccccccccccccCeeEEEECCCC--ceE
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWY 344 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~--~W~ 344 (602)
.||+.. . -+.|++||+.+. .|.
T Consensus 214 ~l~~~~-~--------------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 214 TLYVTS-S--------------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEE-T--------------TTEEEEEETTTTEEEEE
T ss_pred EEEEEe-C--------------CCEEEEEECCCCCEEeE
Confidence 777765 2 256999999987 464
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.03 E-value=0.29 Score=48.16 Aligned_cols=176 Identities=23% Similarity=0.274 Sum_probs=102.8
Q ss_pred CcEEEEEcCCC--cEEEecCCCCCCCceeeE--EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEcccC
Q 007468 101 GDLYRYDVEKQ--EWKVISSPNSPPPRSAHQ--AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLK 174 (602)
Q Consensus 101 ~dv~~yd~~~~--~W~~l~~~~~P~~R~~hs--~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~ 174 (602)
..|.+||+.++ .|+.-.. .+..+.. .+..++.+|+..+ ...+++||+.+.+ |+.-..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~------------~~~l~~~d~~tG~~~W~~~~~- 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG----PGIGGPVATAVPDGGRVYVASG------------DGNLYALDAKTGKVLWRFDLP- 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS----SSCSSEEETEEEETTEEEEEET------------TSEEEEEETTTSEEEEEEECS-
T ss_pred CEEEEEECCCCCEEEEEECC----CCCCCccceEEEeCCEEEEEcC------------CCEEEEEECCCCCEEEEeecc-
Confidence 35788898776 4776321 1122222 4446889998843 2579999998874 766432
Q ss_pred CCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eE-EeccCCCCCCCC-CccceeEEEeCCEEEE
Q 007468 175 GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQ-EIKPRFGSMWPS-PRSGFQFFVYQDEVFL 250 (602)
Q Consensus 175 ~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~-~v~~~~~~~~P~-~R~~~~~~~~~~~Iyv 250 (602)
.+.....++.++.||+..+ -+.+++||+.+.. |+ .....+ +. .+.....++.++.+|+
T Consensus 66 ----~~~~~~~~~~~~~v~v~~~----------~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 66 ----GPISGAPVVDGGRVYVGTS----------DGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----SCGGSGEEEETTEEEEEET----------TSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEETTEEEE
T ss_pred ----ccccceeeecccccccccc----------eeeeEecccCCcceeeeecccccc----ccccccccCceEecCEEEE
Confidence 1222224777889988763 1479999987754 98 454431 22 2333344455777776
Q ss_pred EcCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecCCCCCCC-------CceeEEEEECCeEEEeccccccccc
Q 007468 251 YGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGP-------RAGFSMCVHKKRALLFGGVVDMEMK 321 (602)
Q Consensus 251 ~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~-------R~~~s~~~~~~~lyv~GG~~~~~~~ 321 (602)
... .+ .++++|+.+. .|...... ++.. ......++.++.+|++.+..
T Consensus 128 ~~~-~g----------------~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----- 183 (238)
T PF13360_consen 128 GTS-SG----------------KLVALDPKTGKLLWKYPVGE--PRGSSPISSFSDINGSPVISDGRVYVSSGDG----- 183 (238)
T ss_dssp EET-CS----------------EEEEEETTTTEEEEEEESST--T-SS--EEEETTEEEEEECCTTEEEEECCTS-----
T ss_pred Eec-cC----------------cEEEEecCCCcEEEEeecCC--CCCCcceeeecccccceEEECCEEEEEcCCC-----
Confidence 653 22 3899998865 57775432 1211 11234444467888876642
Q ss_pred cccccccccCeeEEEECCCCc--eEE
Q 007468 322 GDVIMSLFLNELYGFQLDNHR--WYP 345 (602)
Q Consensus 322 ~~~~~~~~~ndv~~yd~~t~~--W~~ 345 (602)
.+..+|..+.+ |..
T Consensus 184 ----------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 184 ----------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp ----------SEEEEETTTTEEEEEE
T ss_pred ----------eEEEEECCCCCEEEEe
Confidence 26777999886 743
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.65 E-value=0.61 Score=49.74 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=101.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.||+.+. ...|++||+.++ .|+.-... +...+.++.++.+|+.+. -..+
T Consensus 65 ~~~v~v~~~----------~g~v~a~d~~tG~~~W~~~~~~-----~~~~~p~v~~~~v~v~~~------------~g~l 117 (377)
T TIGR03300 65 GGKVYAADA----------DGTVVALDAETGKRLWRVDLDE-----RLSGGVGADGGLVFVGTE------------KGEV 117 (377)
T ss_pred CCEEEEECC----------CCeEEEEEccCCcEeeeecCCC-----CcccceEEcCCEEEEEcC------------CCEE
Confidence 677776554 146999998866 48744221 112223444677776432 1468
Q ss_pred EEEECCCC--cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC--ceEEeccCCCCCCCC
Q 007468 159 WMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (602)
Q Consensus 159 ~~yd~~t~--~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~~~P~ 234 (602)
+.||+.+. .|+.... .. .....++.++.+|+..+ ...+++||+.+. .|+.-...+. ..
T Consensus 118 ~ald~~tG~~~W~~~~~----~~-~~~~p~v~~~~v~v~~~----------~g~l~a~d~~tG~~~W~~~~~~~~---~~ 179 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS----SE-VLSPPLVANGLVVVRTN----------DGRLTALDAATGERLWTYSRVTPA---LT 179 (377)
T ss_pred EEEECCCCcEeeeeccC----ce-eecCCEEECCEEEEECC----------CCeEEEEEcCCCceeeEEccCCCc---ee
Confidence 89998776 4875432 11 11223445778777543 246899999875 4876433210 01
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecC--CCCCCCC---ceeEEEEECC
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKI--GMPPGPR---AGFSMCVHKK 307 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~--g~~P~~R---~~~s~~~~~~ 307 (602)
.+...+.++.++.+| +|...+ .++.+|+.+. .|+.-... +.....| ...+.++.++
T Consensus 180 ~~~~~sp~~~~~~v~-~~~~~g----------------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 180 LRGSASPVIADGGVL-VGFAGG----------------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred ecCCCCCEEECCEEE-EECCCC----------------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 122233455566554 444332 3788888654 58653211 0000011 1233445677
Q ss_pred eEEEeccccccccccccccccccCeeEEEECCCC--ceEE
Q 007468 308 RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYP 345 (602)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~--~W~~ 345 (602)
.+|+... ...+++||+.+. .|..
T Consensus 243 ~vy~~~~---------------~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 243 QVYAVSY---------------QGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEc---------------CCEEEEEECCCCcEEEee
Confidence 7777542 135899998776 4654
No 59
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.54 E-value=0.7 Score=46.07 Aligned_cols=200 Identities=17% Similarity=0.094 Sum_probs=106.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.||+.-- ....|++|++.+..-..+..+ . ..++++. ++.+||.... .+
T Consensus 11 ~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~~~---~---~~G~~~~~~~g~l~v~~~~-------------~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI---------PGGRIYRVDPDTGEVEVIDLP---G---PNGMAFDRPDGRLYVADSG-------------GI 62 (246)
T ss_dssp TTEEEEEET---------TTTEEEEEETTTTEEEEEESS---S---EEEEEEECTTSEEEEEETT-------------CE
T ss_pred CCEEEEEEc---------CCCEEEEEECCCCeEEEEecC---C---CceEEEEccCCEEEEEEcC-------------ce
Confidence 467777643 235899999999887766532 2 3344444 6888887642 34
Q ss_pred EEEECCCCcEEEcccC--CC-CCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCC
Q 007468 159 WMLDLKTNQWEQLNLK--GC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSP 235 (602)
Q Consensus 159 ~~yd~~t~~W~~~~~~--~~-p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~ 235 (602)
.++|+.+.+++.+... +. +..+.+-.++.-++.||+---...... ......++++++. .+.+.+... -
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~~~-~~~~~~~~~-------~ 133 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRIDPD-GKVTVVADG-------L 133 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEETT-SEEEEEEEE-------E
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEECCC-CeEEEEecC-------c
Confidence 5679999999887663 11 233333333444778887532211110 0001579999998 665555432 1
Q ss_pred ccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeecCCCCCCC-CceeEEEEE-CCeE
Q 007468 236 RSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGP-RAGFSMCVH-KKRA 309 (602)
Q Consensus 236 R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~-R~~~s~~~~-~~~l 309 (602)
..-.++++. +..||+.--.. ..||+|++.. ..+.........+.. ..--++++- .++|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFN----------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTT----------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred ccccceEECCcchheeeccccc----------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 111234444 55788743322 3389998753 324322211111111 123355554 6788
Q ss_pred EEeccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 310 yv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
||..-. .+.|++||+.-..-..+.
T Consensus 198 ~va~~~--------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 198 WVADWG--------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEET--------------TTEEEEEETTSCEEEEEE
T ss_pred EEEEcC--------------CCEEEEECCCccEEEEEc
Confidence 886221 245999998744333333
No 60
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.32 Score=51.68 Aligned_cols=195 Identities=19% Similarity=0.216 Sum_probs=109.0
Q ss_pred cCCCCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCE-EE
Q 007468 62 NVPAPSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNY-LY 138 (602)
Q Consensus 62 ~~~~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~-iy 138 (602)
+...|+-+.--++-++| .-.|++++|. ++ .-.+|..|-.+|. .+.+.. ..++-...+.+ ++. ..
T Consensus 207 Na~~ps~~~I~sv~FHp--~~plllvaG~--d~-----~lrifqvDGk~N~--~lqS~~--l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHP--TAPLLLVAGL--DG-----TLRIFQVDGKVNP--KLQSIH--LEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred ccCCcCcCCceEEEecC--CCceEEEecC--CC-----cEEEEEecCccCh--hheeee--eccCccceeeecCCCceEE
Confidence 34556666666677887 5679999995 22 1245555555554 443332 12222222222 344 77
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEE-EEECCEEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM-VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 139 V~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~-~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
+++|.. .-+|.||+.+.+-+++.+......++-+.. +...+.++++-|.. .-++.+...
T Consensus 274 ~~s~rr-----------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhak 333 (514)
T KOG2055|consen 274 FTSGRR-----------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAK 333 (514)
T ss_pred Eecccc-----------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhh
Confidence 777752 448899999999998876432223333333 33455677777753 346677777
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe-ecCCCCCCC
Q 007468 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV-KKIGMPPGP 296 (602)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l-~~~g~~P~~ 296 (602)
|+.|-.--.+ +.-....+....+..||+.||+. . ||++|+.++.-... ...| .
T Consensus 334 T~eli~s~Ki-----eG~v~~~~fsSdsk~l~~~~~~G-e----------------V~v~nl~~~~~~~rf~D~G----~ 387 (514)
T KOG2055|consen 334 TKELITSFKI-----EGVVSDFTFSSDSKELLASGGTG-E----------------VYVWNLRQNSCLHRFVDDG----S 387 (514)
T ss_pred hhhhhheeee-----ccEEeeEEEecCCcEEEEEcCCc-e----------------EEEEecCCcceEEEEeecC----c
Confidence 7777432222 33344444444477888888875 3 99999987732221 1111 2
Q ss_pred CceeEEEE-ECCeEEEeccc
Q 007468 297 RAGFSMCV-HKKRALLFGGV 315 (602)
Q Consensus 297 R~~~s~~~-~~~~lyv~GG~ 315 (602)
-.+.+.|. .++..+..|-.
T Consensus 388 v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred cceeeeeecCCCceEEeccC
Confidence 23444443 46665555543
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.24 E-value=0.13 Score=54.35 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=75.7
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCee-eeceE
Q 007468 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVR-YYNDL 211 (602)
Q Consensus 133 ~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~-~~~~v 211 (602)
.+++|+..+.. ..+.+||+.+..-...+. ++.+...-.++.++++||++........... ....+
T Consensus 75 ~gskIv~~d~~------------~~t~vyDt~t~av~~~P~--l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 75 HGSKIVAVDQS------------GRTLVYDTDTRAVATGPR--LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred cCCeEEEEcCC------------CCeEEEECCCCeEeccCC--CCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence 48888888654 237799999998876665 5555555677788999999988644321100 00144
Q ss_pred EEE--E--------CCCCceEEeccCCCCCCCCCcc-------ceeEEEe-CCEEEE-EcCccCCCCCccCCCCCCceee
Q 007468 212 YVF--D--------LDQFKWQEIKPRFGSMWPSPRS-------GFQFFVY-QDEVFL-YGGYSKEVSTDKNQSEKGIIHS 272 (602)
Q Consensus 212 ~~y--d--------~~t~~W~~v~~~~~~~~P~~R~-------~~~~~~~-~~~Iyv-~GG~~~~~~~~~~~~~~~~~~~ 272 (602)
+++ + ...-.|+.+++. |..+. -.+-+++ +..||| .-|.. .
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~P-----Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----------------~ 199 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPP-----PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----------------W 199 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCC-----CccccCCcccceEEEEEEecCCeEEEEecCCc----------------e
Confidence 444 3 123457777664 22222 1222334 777887 43321 1
Q ss_pred eEEEEeCCCCeeEEeecC
Q 007468 273 DLWSLDPRTWEWSKVKKI 290 (602)
Q Consensus 273 dv~~yd~~t~~W~~l~~~ 290 (602)
-.|+||+.+.+|+++..-
T Consensus 200 GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDW 217 (342)
T ss_pred EEEEEEcCCcceeeccce
Confidence 389999999999999543
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.68 E-value=0.57 Score=47.98 Aligned_cols=127 Identities=17% Similarity=0.300 Sum_probs=77.7
Q ss_pred EEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECC
Q 007468 139 IFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLD 217 (602)
Q Consensus 139 V~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~ 217 (602)
++||.+..... .....+..||+.+.+|..+... ..+ .-+.+... +++|||.|-+..... -...+-.||..
T Consensus 2 ~VGG~F~~aGs---L~C~~lC~yd~~~~qW~~~g~~--i~G-~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~ 72 (281)
T PF12768_consen 2 YVGGSFTSAGS---LPCPGLCLYDTDNSQWSSPGNG--ISG-TVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYDFK 72 (281)
T ss_pred EEeeecCCCCC---cCCCEEEEEECCCCEeecCCCC--ceE-EEEEEEEecCCEEEEEEeeEECCC---CceeEEEEecC
Confidence 45665543321 1357899999999999987652 111 12233333 778888876654331 24568899999
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 218 QFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
+.+|+.+.......+|.|......... ...+|+.|..... ..-+..| ...+|+.+..
T Consensus 73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------CceEEEE--cCCceEeccc
Confidence 999999877422344555433333222 5578888876222 2335666 4668988865
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.47 E-value=0.38 Score=50.90 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=77.1
Q ss_pred EEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCC
Q 007468 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (602)
Q Consensus 186 ~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (602)
++.+++|++.+.. ..+.+||+.+..-...+.+ +.+.....++.+++.||++....... ...
T Consensus 73 al~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l-----~~pk~~pisv~VG~~LY~m~~~~~~~--~~~-- 133 (342)
T PF07893_consen 73 ALHGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL-----HSPKRCPISVSVGDKLYAMDRSPFPE--PAG-- 133 (342)
T ss_pred EecCCeEEEEcCC----------CCeEEEECCCCeEeccCCC-----CCCCcceEEEEeCCeEEEeeccCccc--ccc--
Confidence 3358899988664 3378899999866644444 45555556666788899998875430 000
Q ss_pred CCCceeeeEEEEe--------CCCCeeEEeecCCCCCCCCc-------eeEEEEE-CCeEEE-ecccccccccccccccc
Q 007468 266 EKGIIHSDLWSLD--------PRTWEWSKVKKIGMPPGPRA-------GFSMCVH-KKRALL-FGGVVDMEMKGDVIMSL 328 (602)
Q Consensus 266 ~~~~~~~dv~~yd--------~~t~~W~~l~~~g~~P~~R~-------~~s~~~~-~~~lyv-~GG~~~~~~~~~~~~~~ 328 (602)
......-.+..|+ ...+.|..+++ ||..+. -.+-+++ +..|+| +-|..
T Consensus 134 ~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------ 198 (342)
T PF07893_consen 134 RPDFPCFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------ 198 (342)
T ss_pred CccceeEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc------------
Confidence 0000011233333 34568888755 343322 3344556 667777 44321
Q ss_pred ccCeeEEEECCCCceEEeEecC
Q 007468 329 FLNELYGFQLDNHRWYPLELRK 350 (602)
Q Consensus 329 ~~ndv~~yd~~t~~W~~l~~~~ 350 (602)
.-.|.||..+.+|+++....
T Consensus 199 --~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 199 --WGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred --eEEEEEEcCCcceeecccee
Confidence 13799999999999986643
No 64
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.43 E-value=5.9 Score=44.49 Aligned_cols=218 Identities=14% Similarity=0.117 Sum_probs=110.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCC--C-C---CCceeeEEEEECCEEEEEeCccCCCCCCcc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN--S-P---PPRSAHQAVSWKNYLYIFGGEFTSPNQERF 152 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~--~-P---~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~ 152 (602)
++.||+... .+.|+++|..+. .|+.-.... . + ........++.+++||+...
T Consensus 69 ~g~vyv~s~----------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------- 128 (527)
T TIGR03075 69 DGVMYVTTS----------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------- 128 (527)
T ss_pred CCEEEEECC----------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----------
Confidence 678887544 246899999876 587543211 0 0 00111234555777776432
Q ss_pred eecCeEEEEECCCC--cEEEcccCCCCCC--CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEecc
Q 007468 153 HHYKDFWMLDLKTN--QWEQLNLKGCPSP--RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKP 226 (602)
Q Consensus 153 ~~~~dv~~yd~~t~--~W~~~~~~~~p~~--R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~ 226 (602)
-..++.||..|. .|+.-.. .+.. ....+-++.++.||+-...... .....|+.||..|.+ |+.-..
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~----~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEF----GVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred --CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccccc----CCCcEEEEEECCCCceeEeccCc
Confidence 245889999887 4765432 1111 1122345668887764321111 123579999998864 775443
Q ss_pred CCCCC-----------------CC---CCccce----eEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC
Q 007468 227 RFGSM-----------------WP---SPRSGF----QFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (602)
Q Consensus 227 ~~~~~-----------------~P---~~R~~~----~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (602)
.+... .+ ..+.+. .+++- .+.||+--|.-.. +..........+.+.+..+|+.
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p-~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP-WNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC-CCCCCCCCCCccceeEEEEccc
Confidence 21100 00 011111 12222 5677876665211 0000011223567899999998
Q ss_pred CC--eeEEeecCCC-----CCCCCceeEEEEECCe---EEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 281 TW--EWSKVKKIGM-----PPGPRAGFSMCVHKKR---ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 281 t~--~W~~l~~~g~-----~P~~R~~~s~~~~~~~---lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
|. .|..-..... .+.+...+-+- .+++ +++.+..+ ..+|+||..+.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~-~~G~~~~~v~~~~K~--------------G~~~vlDr~tG~ 336 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLK-KDGKPRKLLAHADRN--------------GFFYVLDRTNGK 336 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEec-cCCcEEEEEEEeCCC--------------ceEEEEECCCCc
Confidence 76 5776542111 11111111110 2443 77777664 358999988875
No 65
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.06 E-value=4.2 Score=40.74 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=54.1
Q ss_pred EEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 83 ELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 83 ~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
.+|+.++. -+.+++||+.+++-...-... ..++ +++.. +..+|+.++. .+.+++
T Consensus 2 ~~~~s~~~---------d~~v~~~d~~t~~~~~~~~~~-~~~~---~l~~~~dg~~l~~~~~~-----------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEK---------DNTISVIDTATLEVTRTFPVG-QRPR---GITLSKDGKLLYVCASD-----------SDTIQV 57 (300)
T ss_pred cEEEEecC---------CCEEEEEECCCCceEEEEECC-CCCC---ceEECCCCCEEEEEECC-----------CCeEEE
Confidence 46666662 247888998877644332211 1122 22222 3457777653 245888
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
||+.+.+....-.. .+.+ +.++.. ++.+|+.++. ...+.+||+.+..
T Consensus 58 ~d~~~~~~~~~~~~-~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~~~ 106 (300)
T TIGR03866 58 IDLATGEVIGTLPS-GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIETRK 106 (300)
T ss_pred EECCCCcEEEeccC-CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCCCe
Confidence 99988776542221 1111 222222 3457666542 2468889988753
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.01 E-value=0.43 Score=50.74 Aligned_cols=151 Identities=21% Similarity=0.259 Sum_probs=89.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCC-CCCCcccEEEEECCE-EEEEcCccCCCCCeeeeceE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHK-IIVFGGFYDTLREVRYYNDL 211 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~-p~~R~~h~~~~~~~~-Lyv~GG~~~~~~~~~~~~~v 211 (602)
.-.+.+++|.+.. -.+|..|-++|. .+...-+ -.|....+.+ -++. .++++|. ..-+
T Consensus 224 ~~plllvaG~d~~---------lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~-p~G~~~i~~s~r---------rky~ 282 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---------LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFA-PNGHSVIFTSGR---------RKYL 282 (514)
T ss_pred CCceEEEecCCCc---------EEEEEecCccCh--hheeeeeccCccceeeec-CCCceEEEeccc---------ceEE
Confidence 3568889997643 356667777775 2222001 1122111111 2444 7777775 3458
Q ss_pred EEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC
Q 007468 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (602)
Q Consensus 212 ~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (602)
|.||+.+.+-+++.++-+ .+.+-.-.-.+...+.++++-|..+. |+.+...|+.|..--.+
T Consensus 283 ysyDle~ak~~k~~~~~g--~e~~~~e~FeVShd~~fia~~G~~G~----------------I~lLhakT~eli~s~Ki- 343 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYG--VEEKSMERFEVSHDSNFIAIAGNNGH----------------IHLLHAKTKELITSFKI- 343 (514)
T ss_pred EEeeccccccccccCCCC--cccchhheeEecCCCCeEEEcccCce----------------EEeehhhhhhhhheeee-
Confidence 999999999998887632 23222222234446667777777766 78888888887643221
Q ss_pred CCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 292 MPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 292 ~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
+..-..++....+..||+.||. ..||+||+..+
T Consensus 344 --eG~v~~~~fsSdsk~l~~~~~~---------------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 344 --EGVVSDFTFSSDSKELLASGGT---------------GEVYVWNLRQN 376 (514)
T ss_pred --ccEEeeEEEecCCcEEEEEcCC---------------ceEEEEecCCc
Confidence 2222333334446778888886 35999999887
No 67
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.75 E-value=2.6 Score=40.62 Aligned_cols=149 Identities=21% Similarity=0.341 Sum_probs=75.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcE--EEecCCCCCCCceeeEEEEEC--CEEEEEeCccCCCCCCcceecC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYK 156 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W--~~l~~~~~P~~R~~hs~~~~~--~~iyV~GG~~~~~~~~~~~~~~ 156 (602)
.+++|+|-|. .+|+|+...... +.+...-+..+..-.++.... +.+|+|-| +
T Consensus 16 ~g~~y~FkG~-----------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------------~ 71 (194)
T cd00094 16 RGELYFFKGR-----------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------------D 71 (194)
T ss_pred CCEEEEEeCC-----------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------------C
Confidence 4889999773 567777652211 122221110122223333433 78999977 3
Q ss_pred eEEEEECCCCcEE---EcccCCCCC-CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCC-
Q 007468 157 DFWMLDLKTNQWE---QLNLKGCPS-PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFG- 229 (602)
Q Consensus 157 dv~~yd~~t~~W~---~~~~~~~p~-~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~- 229 (602)
.+|+|+..+..+. .+...+.|. +..-.++..+ ++++|+|-| +..|+||..+.+...--+.+-
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcchh
Confidence 5788887642221 111111221 1112233344 579999988 467888876554321101000
Q ss_pred ---CCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 230 ---SMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 230 ---~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
..+|.. ...+....++.+|+|-|. ..|+||..+.+
T Consensus 141 ~~w~g~p~~-idaa~~~~~~~~yfF~g~------------------~y~~~d~~~~~ 178 (194)
T cd00094 141 TDFPGVPDK-VDAAFRWLDGYYYFFKGD------------------QYWRFDPRSKE 178 (194)
T ss_pred hcCCCcCCC-cceeEEeCCCcEEEEECC------------------EEEEEeCccce
Confidence 012222 222222224889999774 38899987765
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.73 E-value=3.5 Score=45.29 Aligned_cols=147 Identities=10% Similarity=0.103 Sum_probs=79.0
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
..+|++|+.+.+-..+.. .+..- ......- +.+|++.....+ ..++|.+|+.+...+.+.... .
T Consensus 242 ~~L~~~dl~tg~~~~lt~--~~g~~-~~~~wSPDG~~La~~~~~~g-------~~~Iy~~dl~tg~~~~lt~~~-----~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS--FPGIN-GAPRFSPDGKKLALVLSKDG-------QPEIYVVDIATKALTRITRHR-----A 306 (448)
T ss_pred cEEEEEECCCCCeEEecC--CCCCc-CCeeECCCCCEEEEEEeCCC-------CeEEEEEECCCCCeEECccCC-----C
Confidence 579999999887766654 22111 1111111 345655433221 257999999998888775531 1
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEE-ECCeEEEec
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~-~~~~lyv~G 313 (602)
.-...+....+..|++.....+ ...+|++|+.+..++++...+.. ..+.++ -+++.++|.
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~g--------------~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERGG--------------KPQIYRVNLASGKVSRLTFEGEQ-----NLGGSITPDGRSMIMV 367 (448)
T ss_pred CccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEEecCCCC-----CcCeeECCCCCEEEEE
Confidence 1111111112445555432221 14699999999999888532211 111222 244444443
Q ss_pred cccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
+... ....|+.+|+.+.....+.
T Consensus 368 ~~~~-----------g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 368 NRTN-----------GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EecC-----------CceEEEEEECCCCCeEEcc
Confidence 3221 1246999999998776654
No 69
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.72 E-value=3.7 Score=45.12 Aligned_cols=149 Identities=9% Similarity=0.017 Sum_probs=79.6
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR 180 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R 180 (602)
..+|++|+.+++-..+.... ......+...-+..|++...... ..++|++|+.++..+++... . ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~--g~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~dl~tg~~~~lt~~--~-~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP--GINGAPRFSPDGKKLALVLSKDG---------QPEIYVVDIATKALTRITRH--R-AI 307 (448)
T ss_pred cEEEEEECCCCCeEEecCCC--CCcCCeeECCCCCEEEEEEeCCC---------CeEEEEEECCCCCeEECccC--C-CC
Confidence 47999999988877775421 11111111111345655432211 25799999999998887542 1 11
Q ss_pred cccEEEEECC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCC
Q 007468 181 SGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (602)
Q Consensus 181 ~~h~~~~~~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~ 259 (602)
.......-++ +|++.....+ ...+|.+|+.+..++.+... + ... ...+....+..||+.+. ...
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g-------~~~Iy~~dl~~g~~~~Lt~~--g--~~~-~~~~~SpDG~~l~~~~~-~~g-- 372 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG-------KPQIYRVNLASGKVSRLTFE--G--EQN-LGGSITPDGRSMIMVNR-TNG-- 372 (448)
T ss_pred ccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEEecC--C--CCC-cCeeECCCCCEEEEEEe-cCC--
Confidence 1111112244 4544432211 25799999999999887533 1 111 11122222445555432 211
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
...+|++|+.+...+.+..
T Consensus 373 -----------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -----------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -----------ceEEEEEECCCCCeEEccC
Confidence 1358999999888877653
No 70
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.43 E-value=10 Score=42.18 Aligned_cols=122 Identities=14% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC--cEEEecCCC--CCCC-ceeeEEEEEC-CEEEEEeCccCCCCCCccee
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ--EWKVISSPN--SPPP-RSAHQAVSWK-NYLYIFGGEFTSPNQERFHH 154 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~--~W~~l~~~~--~P~~-R~~hs~~~~~-~~iyV~GG~~~~~~~~~~~~ 154 (602)
++.||+.... ..|+++|+.+. .|+.-.... .+.+ -.....++.+ +.||+...
T Consensus 61 ~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------------ 118 (488)
T cd00216 61 DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------------ 118 (488)
T ss_pred CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------------
Confidence 7888876541 47899999876 488533211 0000 0111233445 77776432
Q ss_pred cCeEEEEECCCC--cEEEcccCCC-CCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEec
Q 007468 155 YKDFWMLDLKTN--QWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIK 225 (602)
Q Consensus 155 ~~dv~~yd~~t~--~W~~~~~~~~-p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~ 225 (602)
...++.||..+. .|+.-..... +......+.++.++.+|+ |..............+++||..|.+ |+.-.
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 245888998876 4876433110 000012233455666664 4321110000124679999998754 87643
No 71
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.37 E-value=3.8 Score=44.13 Aligned_cols=148 Identities=15% Similarity=0.062 Sum_probs=79.6
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEEC-CEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
..+++||+.+.....+.. .+..... ....-+ ..|++.....+ ...+|.+|+.+.....+.... .
T Consensus 214 ~~i~v~d~~~g~~~~~~~--~~~~~~~-~~~spDg~~l~~~~~~~~-------~~~i~~~d~~~~~~~~l~~~~-----~ 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS--FPGMNGA-PAFSPDGSKLAVSLSKDG-------NPDIYVMDLDGKQLTRLTNGP-----G 278 (417)
T ss_pred cEEEEEECCCCCEEEeec--CCCCccc-eEECCCCCEEEEEECCCC-------CccEEEEECCCCCEEECCCCC-----C
Confidence 568999999887666543 2211111 111123 35655433221 257999999988877775441 1
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEec
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFG 313 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~G 313 (602)
..........+..|++.....+ ...+|++++.+..+..+...+ ......++. +++.+++.
T Consensus 279 ~~~~~~~s~dg~~l~~~s~~~g--------------~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 279 IDTEPSWSPDGKSIAFTSDRGG--------------SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCCCEEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEE
Confidence 1111111112345554433222 136999999888888775432 122222332 55666665
Q ss_pred cccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.... ....|+.+|+.+..+..+..
T Consensus 340 ~~~~-----------~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 340 HREG-----------GGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EccC-----------CceEEEEEeCCCCCeEEccC
Confidence 4322 13469999999876655543
No 72
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.34 E-value=4.1 Score=39.25 Aligned_cols=152 Identities=17% Similarity=0.277 Sum_probs=76.1
Q ss_pred EEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEcccCCCC-CCCcccEEEEEC--CEEEEEcCccCCCCC
Q 007468 130 AVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKGCP-SPRSGHRMVLYK--HKIIVFGGFYDTLRE 204 (602)
Q Consensus 130 ~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~~~p-~~R~~h~~~~~~--~~Lyv~GG~~~~~~~ 204 (602)
++...+.+|+|-|. .+|+|+..... -..+... .| .+..-.++.... +++|+|-|
T Consensus 12 ~~~~~g~~y~FkG~-------------~~w~~~~~~~~~~p~~I~~~-w~~~p~~IDAa~~~~~~~~~yfFkg------- 70 (194)
T cd00094 12 VTTLRGELYFFKGR-------------YFWRLSPGKPPGSPFLISSF-WPSLPSPVDAAFERPDTGKIYFFKG------- 70 (194)
T ss_pred EEEeCCEEEEEeCC-------------EEEEEeCCCCCCCCeEhhhh-CCCCCCCccEEEEECCCCEEEEECC-------
Confidence 34446889999773 46788765211 1122110 12 122233444443 79999977
Q ss_pred eeeeceEEEEECCCCceEEeccCCC-CCCCC-CccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC
Q 007468 205 VRYYNDLYVFDLDQFKWQEIKPRFG-SMWPS-PRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (602)
Q Consensus 205 ~~~~~~v~~yd~~t~~W~~v~~~~~-~~~P~-~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (602)
+.+|+|+..+..+........ +..+. .....+.... ++++|+|-|.. .|+||...
T Consensus 71 ----~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~------------------y~ry~~~~ 128 (194)
T cd00094 71 ----DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK------------------YWRYDEKT 128 (194)
T ss_pred ----CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE------------------EEEEeCCC
Confidence 457888765422211111100 11111 2222222222 68999998842 77888655
Q ss_pred CeeEE-----eec--CCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 282 WEWSK-----VKK--IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 282 ~~W~~-----l~~--~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
++... +.. .| .|. ....+....++++|+|-|. .+|.||..+.+
T Consensus 129 ~~v~~~yP~~i~~~w~g-~p~-~idaa~~~~~~~~yfF~g~----------------~y~~~d~~~~~ 178 (194)
T cd00094 129 QKMDPGYPKLIETDFPG-VPD-KVDAAFRWLDGYYYFFKGD----------------QYWRFDPRSKE 178 (194)
T ss_pred ccccCCCCcchhhcCCC-cCC-CcceeEEeCCCcEEEEECC----------------EEEEEeCccce
Confidence 44321 000 11 121 1222222334889999874 48999988765
No 73
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.23 E-value=0.51 Score=48.28 Aligned_cols=112 Identities=16% Similarity=0.284 Sum_probs=70.3
Q ss_pred eceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 007468 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (602)
Q Consensus 208 ~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (602)
...+..||+.+.+|..+... -.+ .-.++... +++|||.|-.... +.....+-.||..+.+|+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-----i~G-~V~~l~~~~~~~Llv~G~ft~~----------~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-----ISG-TVTDLQWASNNQLLVGGNFTLN----------GTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-----ceE-EEEEEEEecCCEEEEEEeeEEC----------CCCceeEEEEecCCCeeee
Confidence 67899999999999987654 122 12334433 7888888865544 1234558899999999998
Q ss_pred eecC--CCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 287 VKKI--GMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 287 l~~~--g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
+... ...|.|-........ ...+++.|.. . ....+++.-+-.+|..+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~------------~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-A------------NGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEecee-c------------CCCceEEEEcCCceEeccc
Confidence 8762 234555333332222 3467777765 2 1233444446778998877
No 74
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.21 E-value=10 Score=41.35 Aligned_cols=193 Identities=13% Similarity=-0.001 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEEC-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~-~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
..+|++|+.++..+.+.... ..-. .....-+ ..|++...... ..++|++|+.+....++.. .+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~--g~~~-~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~Lt~--~~~~ 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP--GMTF-APRFSPDGRKVVMSLSQGG---------NTDIYTMDLRSGTTTRLTD--SPAI 291 (435)
T ss_pred CEEEEEECCCCcEEEeecCC--Cccc-CcEECCCCCEEEEEEecCC---------CceEEEEECCCCceEEccC--CCCc
Confidence 57999999999888776422 1111 1111123 45544432211 2579999999988777654 1211
Q ss_pred CcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCC
Q 007468 180 RSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVS 259 (602)
Q Consensus 180 R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~ 259 (602)
.......-+++-++|..... + ...+|++|+.+...+.+... ............+..|++.. ....
T Consensus 292 -~~~~~~spDG~~i~f~s~~~-g-----~~~Iy~~d~~g~~~~~lt~~-----~~~~~~~~~SpdG~~ia~~~-~~~~-- 356 (435)
T PRK05137 292 -DTSPSYSPDGSQIVFESDRS-G-----SPQLYVMNADGSNPRRISFG-----GGRYSTPVWSPRGDLIAFTK-QGGG-- 356 (435)
T ss_pred -cCceeEcCCCCEEEEEECCC-C-----CCeEEEEECCCCCeEEeecC-----CCcccCeEECCCCCEEEEEE-cCCC--
Confidence 11111222444333432111 1 25799999988777776543 11111111112244554443 2111
Q ss_pred CccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEEC
Q 007468 260 TDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (602)
Q Consensus 260 ~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~ 338 (602)
...++.+|+.+.....+... .. .....+. +++.++|-...... .....||++++
T Consensus 357 -----------~~~i~~~d~~~~~~~~lt~~-----~~-~~~p~~spDG~~i~~~~~~~~~--------~~~~~L~~~dl 411 (435)
T PRK05137 357 -----------QFSIGVMKPDGSGERILTSG-----FL-VEGPTWAPNGRVIMFFRQTPGS--------GGAPKLYTVDL 411 (435)
T ss_pred -----------ceEEEEEECCCCceEeccCC-----CC-CCCCeECCCCCEEEEEEccCCC--------CCcceEEEEEC
Confidence 13588899876665555331 11 1122222 45555553332110 00246999998
Q ss_pred CCCceEEeE
Q 007468 339 DNHRWYPLE 347 (602)
Q Consensus 339 ~t~~W~~l~ 347 (602)
....-..+.
T Consensus 412 ~g~~~~~l~ 420 (435)
T PRK05137 412 TGRNEREVP 420 (435)
T ss_pred CCCceEEcc
Confidence 876655554
No 75
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.01 E-value=9.4 Score=41.01 Aligned_cols=146 Identities=11% Similarity=0.011 Sum_probs=78.4
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-C-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~-~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..+|+||+.++....+.... .... +.+.. + ..|++...... ..++|.+|+.+.....+... +.
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~--~~~~--~~~~spDg~~l~~~~~~~~---------~~~i~~~d~~~~~~~~l~~~--~~ 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP--GMNG--APAFSPDGSKLAVSLSKDG---------NPDIYVMDLDGKQLTRLTNG--PG 278 (417)
T ss_pred cEEEEEECCCCCEEEeecCC--CCcc--ceEECCCCCEEEEEECCCC---------CccEEEEECCCCCEEECCCC--CC
Confidence 47899999988776665321 1111 12222 3 45655433211 25799999999888777542 11
Q ss_pred CCcccEEEEECC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccC
Q 007468 179 PRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (602)
Q Consensus 179 ~R~~h~~~~~~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~ 256 (602)
.... ....-++ +|++...... ...+|.+|+.+..+..+.... ......+.. ++..+++.....
T Consensus 279 ~~~~-~~~s~dg~~l~~~s~~~g-------~~~iy~~d~~~~~~~~l~~~~-------~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 279 IDTE-PSWSPDGKSIAFTSDRGG-------SPQIYMMDADGGEVRRLTFRG-------GYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred CCCC-EEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecCC-------CCccCeEECCCCCEEEEEEccC
Confidence 1111 1111244 4544332211 247999999988887775431 111222222 455555544332
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
. ...++.+|+.+..++.+..
T Consensus 344 ~-------------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 344 G-------------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred C-------------ceEEEEEeCCCCCeEEccC
Confidence 1 2358999998877766643
No 76
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.96 E-value=8.9 Score=41.83 Aligned_cols=182 Identities=10% Similarity=-0.001 Sum_probs=93.9
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
..+|++|+.+++-..+.... .. .......- +..|++...... ..++|++|+.+....++... +.
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~--g~-~~~~~~SpDG~~l~~~~s~~g---------~~~Iy~~d~~~g~~~~lt~~--~~- 292 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR--GI-NGAPSFSPDGRRLALTLSRDG---------NPEIYVMDLGSRQLTRLTNH--FG- 292 (433)
T ss_pred cEEEEEECCCCCEEEeccCC--CC-ccCceECCCCCEEEEEEeCCC---------CceEEEEECCCCCeEECccC--CC-
Confidence 47899999988887775421 11 11111111 345554432211 24799999999887766541 11
Q ss_pred CcccEEEEECCE-EEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEcCccC
Q 007468 180 RSGHRMVLYKHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGYSK 256 (602)
Q Consensus 180 R~~h~~~~~~~~-Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~--~~~~Iyv~GG~~~ 256 (602)
........-+++ |++.....+ ...+|.+|+.+..++.+... + ......+. .+..|++..+..+
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g-------~~~iy~~dl~~g~~~~lt~~--g-----~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGG-------RPQIYRVAASGGSAERLTFQ--G-----NYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred CccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEEeecC--C-----CCccCEEECCCCCEEEEEECCCC
Confidence 111111122444 443322211 24799999988888877643 1 11112222 2556665544221
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEE
Q 007468 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGF 336 (602)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~y 336 (602)
. ..++++|+.+..++.+...+ . ...-...-+++.++|..... -...||.+
T Consensus 359 ~--------------~~I~v~d~~~g~~~~Lt~~~---~--~~~p~~spdG~~i~~~s~~~-----------g~~~L~~~ 408 (433)
T PRK04922 359 Q--------------YRIAVMDLSTGSVRTLTPGS---L--DESPSFAPNGSMVLYATREG-----------GRGVLAAV 408 (433)
T ss_pred c--------------eeEEEEECCCCCeEECCCCC---C--CCCceECCCCCEEEEEEecC-----------CceEEEEE
Confidence 1 26899999888887765321 1 11111223566555544321 12458888
Q ss_pred ECCCC
Q 007468 337 QLDNH 341 (602)
Q Consensus 337 d~~t~ 341 (602)
++...
T Consensus 409 ~~~g~ 413 (433)
T PRK04922 409 STDGR 413 (433)
T ss_pred ECCCC
Confidence 88543
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.79 E-value=1.4 Score=44.35 Aligned_cols=111 Identities=20% Similarity=0.296 Sum_probs=78.4
Q ss_pred EEEE-ECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCcc
Q 007468 184 RMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (602)
Q Consensus 184 ~~~~-~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~ 262 (602)
+... .++.||.--|..+ -+.+.+||+.+.+-...... |..-++=++++++++||..--..+.
T Consensus 49 GL~~~~~g~LyESTG~yG-------~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~~d~l~qLTWk~~~----- 111 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG-------QSSLRKVDLETGKVLQSVPL-----PPRYFGEGITILGDKLYQLTWKEGT----- 111 (264)
T ss_dssp EEEEEETTEEEEEECSTT-------EEEEEEEETTTSSEEEEEE------TTT--EEEEEEETTEEEEEESSSSE-----
T ss_pred cEEecCCCEEEEeCCCCC-------cEEEEEEECCCCcEEEEEEC-----CccccceeEEEECCEEEEEEecCCe-----
Confidence 3444 5789999888766 36799999999987766666 6677888999999999999877665
Q ss_pred CCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
+++||+.+. ..+... +.+.-|-+++..+..||+--|. +.++.+||.+-+
T Consensus 112 -----------~f~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS---------------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 112 -----------GFVYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS---------------SRLYFLDPETFK 160 (264)
T ss_dssp -----------EEEEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS---------------SEEEEE-TTT-S
T ss_pred -----------EEEEccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc---------------cceEEECCcccc
Confidence 899999764 444332 3456788888888889988774 459999998753
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.75 E-value=7.6 Score=42.38 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=74.4
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEECC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
..+|++|+.+.....+.. .+..... ....-++ +|++.....+ ..++|.+|+.+.....+... +.
T Consensus 226 ~~i~~~dl~~g~~~~l~~--~~g~~~~-~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~Lt~~-----~~ 290 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN--FPGMTFA-PRFSPDGRKVVMSLSQGG-------NTDIYTMDLRSGTTTRLTDS-----PA 290 (435)
T ss_pred CEEEEEECCCCcEEEeec--CCCcccC-cEECCCCCEEEEEEecCC-------CceEEEEECCCCceEEccCC-----CC
Confidence 579999999998877754 2221111 1112234 5544433221 35799999998877776554 11
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEE-ECCeEEEec
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-HKKRALLFG 313 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~-~~~~lyv~G 313 (602)
.-...+....+..|++.....+ ...+|++|+.+...+++... ..+.. .... -+++.++|.
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g--------------~~~Iy~~d~~g~~~~~lt~~----~~~~~-~~~~SpdG~~ia~~ 351 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSG--------------SPQLYVMNADGSNPRRISFG----GGRYS-TPVWSPRGDLIAFT 351 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCC--------------CCeEEEEECCCCCeEEeecC----CCccc-CeEECCCCCEEEEE
Confidence 1111111112344443321111 13689999888777777532 11111 1222 244444433
Q ss_pred cccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 314 GVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 314 G~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
.... -...|+++|+.+.....+.
T Consensus 352 ~~~~-----------~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 352 KQGG-----------GQFSIGVMKPDGSGERILT 374 (435)
T ss_pred EcCC-----------CceEEEEEECCCCceEecc
Confidence 2211 0246899998776654443
No 79
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.69 E-value=8.8 Score=41.67 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=78.3
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~ 232 (602)
..+|++|+.++.-+.+.. .+. .. ....+ ++ +|++..-..+ ..++|++|+.+...+.+...
T Consensus 223 ~~l~~~~l~~g~~~~l~~--~~g--~~-~~~~~SpDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 285 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN--FEG--LN-GAPAWSPDGSKLAFVLSKDG-------NPEIYVMDLASRQLSRVTNH----- 285 (430)
T ss_pred CEEEEEECCCCCEEEccC--CCC--Cc-CCeEECCCCCEEEEEEccCC-------CceEEEEECCCCCeEEcccC-----
Confidence 479999999988777654 121 11 12222 33 4544322111 25799999999988877543
Q ss_pred CCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEE-E-CCeEE
Q 007468 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV-H-KKRAL 310 (602)
Q Consensus 233 P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~-~-~~~ly 310 (602)
+..-........+..||+.....+ ...+|.+++.+..+.++...+ .......+ - ++.|+
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g--------------~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGG--------------KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCC--------------CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEE
Confidence 111111111122445655432211 136899999888888875422 11112222 2 34444
Q ss_pred EeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 311 v~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
+.....+ ...|+++|+.+..++.+..
T Consensus 347 ~~~~~~~------------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 347 MVHRQDG------------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEccCC------------ceEEEEEECCCCCEEEccC
Confidence 4332111 2359999999988776653
No 80
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.59 E-value=7.4 Score=37.64 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=32.5
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++..+++|+. ...+++|++.+......-.. ....-.++... ++.+++.|+.. ..+.
T Consensus 62 ~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~ 118 (289)
T cd00200 62 DGTYLASGSS---------DKTIRLWDLETGECVRTLTG---HTSYVSSVAFSPDGRILSSSSRD-----------KTIK 118 (289)
T ss_pred CCCEEEEEcC---------CCeEEEEEcCcccceEEEec---cCCcEEEEEEcCCCCEEEEecCC-----------CeEE
Confidence 4456666662 24788888887532221111 11112223333 34566665522 4578
Q ss_pred EEECCCCc
Q 007468 160 MLDLKTNQ 167 (602)
Q Consensus 160 ~yd~~t~~ 167 (602)
+||+.+..
T Consensus 119 ~~~~~~~~ 126 (289)
T cd00200 119 VWDVETGK 126 (289)
T ss_pred EEECCCcE
Confidence 88887554
No 81
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.57 E-value=7.5 Score=37.61 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=50.1
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++.++++|+. .+.++.|+..+..-....... .... ..+... ++..+++++.. ..+.
T Consensus 20 ~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~--~~~i-~~~~~~~~~~~l~~~~~~-----------~~i~ 76 (289)
T cd00200 20 DGKLLATGSG---------DGTIKVWDLETGELLRTLKGH--TGPV-RDVAASADGTYLASGSSD-----------KTIR 76 (289)
T ss_pred CCCEEEEeec---------CcEEEEEEeeCCCcEEEEecC--Ccce-eEEEECCCCCEEEEEcCC-----------CeEE
Confidence 4567777762 246778887766422211111 1111 122222 34466666642 4578
Q ss_pred EEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
+|++.+......-. .. ...-.++... ++.+++.|+. ...+..||+.+..
T Consensus 77 i~~~~~~~~~~~~~--~~-~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~ 126 (289)
T cd00200 77 LWDLETGECVRTLT--GH-TSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGK 126 (289)
T ss_pred EEEcCcccceEEEe--cc-CCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcE
Confidence 88887753221111 01 1111222222 3466666653 2468888887543
No 82
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.56 E-value=2.6 Score=43.88 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=82.8
Q ss_pred CEEEEEeCccCCCCCCcceec-CeEEEEECCCC-----cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeee
Q 007468 135 NYLYIFGGEFTSPNQERFHHY-KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYY 208 (602)
Q Consensus 135 ~~iyV~GG~~~~~~~~~~~~~-~dv~~yd~~t~-----~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~ 208 (602)
..++|+|........ .... ..+..|++... +++.+... +..-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~--~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~~~~lv~~~g----------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGED--PEPSSGRILVFEISESPENNFKLKLIHST--EVKGPVTAICSFNGRLVVAVG----------- 106 (321)
T ss_dssp SEEEEEEEEE--TTS--SS-S-EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEETTEEEEEET-----------
T ss_pred cCEEEEEeccccccc--ccccCcEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhhCCEEEEeec-----------
Confidence 467777754333222 1122 66889998885 56655442 222334567777999777655
Q ss_pred ceEEEEECCCCc-eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 209 NDLYVFDLDQFK-WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 209 ~~v~~yd~~t~~-W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
+.++.|++.... +...... ..+-...++.++++.|+|---+. . -.++.|+....+-..+
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~-----~~~~~i~sl~~~~~~I~vgD~~~-s--------------v~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFY-----DSPFYITSLSVFKNYILVGDAMK-S--------------VSLLRYDEENNKLILV 166 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE------BSSSEEEEEEETTEEEEEESSS-S--------------EEEEEEETTTE-EEEE
T ss_pred CEEEEEEccCcccchhhhee-----cceEEEEEEeccccEEEEEEccc-C--------------EEEEEEEccCCEEEEE
Confidence 467778777777 8887776 34446666677788766543332 2 2355778766667777
Q ss_pred ecCCCCCCCCceeEEEEE-CCeEEEe
Q 007468 288 KKIGMPPGPRAGFSMCVH-KKRALLF 312 (602)
Q Consensus 288 ~~~g~~P~~R~~~s~~~~-~~~lyv~ 312 (602)
+.. +.++...++.++ ++..+++
T Consensus 167 a~d---~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 167 ARD---YQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp EEE---SS-BEEEEEEEE-SSSEEEE
T ss_pred Eec---CCCccEEEEEEecCCcEEEE
Confidence 654 457777777777 6554433
No 83
>PRK13684 Ycf48-like protein; Provisional
Probab=93.51 E-value=11 Score=39.54 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=76.0
Q ss_pred CcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEEC
Q 007468 111 QEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYK 189 (602)
Q Consensus 111 ~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~ 189 (602)
.+|+.+..+. ..+...+...++ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-+-+.+....
T Consensus 119 ~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------------G~i~~S~DgG~tW~~~~~---~~~g~~~~i~~~~ 182 (334)
T PRK13684 119 KNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------------GAIYRTTDGGKNWEALVE---DAAGVVRNLRRSP 182 (334)
T ss_pred CCCeEccCCc-CCCCCceEEEEECCCcceeeecc------------ceEEEECCCCCCceeCcC---CCcceEEEEEECC
Confidence 4898876431 122222333344 3456666542 234454445679998865 2233344455444
Q ss_pred CEEEEEcCccCCCCCeeeeceEEEE-ECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCC
Q 007468 190 HKIIVFGGFYDTLREVRYYNDLYVF-DLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEK 267 (602)
Q Consensus 190 ~~Lyv~GG~~~~~~~~~~~~~v~~y-d~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~ 267 (602)
+..|+..|..+ .++.- +....+|+.+... ..+.-++++.. ++.+|++|... .
T Consensus 183 ~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~~------~~~~l~~i~~~~~g~~~~vg~~G-~---------- 236 (334)
T PRK13684 183 DGKYVAVSSRG---------NFYSTWEPGQTAWTPHQRN------SSRRLQSMGFQPDGNLWMLARGG-Q---------- 236 (334)
T ss_pred CCeEEEEeCCc---------eEEEEcCCCCCeEEEeeCC------CcccceeeeEcCCCCEEEEecCC-E----------
Confidence 44444433222 22222 3334579987543 34444555544 77888887542 1
Q ss_pred CceeeeEEEE--eCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccc
Q 007468 268 GIIHSDLWSL--DPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (602)
Q Consensus 268 ~~~~~dv~~y--d~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~ 315 (602)
.++ +-.-.+|+.+... ........+++++. .+.+|++|..
T Consensus 237 -------~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 237 -------IRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred -------EEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCC
Confidence 123 1233589976321 00011223344444 5678888754
No 84
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.26 E-value=8.6 Score=41.95 Aligned_cols=146 Identities=11% Similarity=0.093 Sum_probs=76.7
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEECC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
..+|++|+.+++...+.. .+.. .......-++ +|++.....+ ..++|++|+.+.....+... +.
T Consensus 228 ~~l~~~dl~~g~~~~l~~--~~g~-~~~~~~SpDG~~l~~~~s~~g-------~~~Iy~~d~~~g~~~~lt~~-----~~ 292 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS--FRGI-NGAPSFSPDGRRLALTLSRDG-------NPEIYVMDLGSRQLTRLTNH-----FG 292 (433)
T ss_pred cEEEEEECCCCCEEEecc--CCCC-ccCceECCCCCEEEEEEeCCC-------CceEEEEECCCCCeEECccC-----CC
Confidence 568999999988777654 2211 1111112234 5554332221 25799999998876665443 11
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CCeEEEe
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KKRALLF 312 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~ 312 (602)
.-...+....+..|++.....+ ...+|.++..+..++++...+ ......++. +..|++.
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g--------------~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGG--------------RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMV 353 (433)
T ss_pred CccceEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEE
Confidence 1111111111334444332221 136999999888888775432 112222232 4445444
Q ss_pred ccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 313 GGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 313 GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
.+..+ -..|+++|+.+..+..+.
T Consensus 354 ~~~~~------------~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 354 HGSGG------------QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred ECCCC------------ceeEEEEECCCCCeEECC
Confidence 33211 137999999888877554
No 85
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.14 E-value=14 Score=40.17 Aligned_cols=149 Identities=10% Similarity=0.036 Sum_probs=76.1
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEECC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
..++++++.+++-+.+.. .+.. .......-++ +|++.....+ ...+|.+|+.+...+++... +.
T Consensus 223 ~~i~i~dl~~G~~~~l~~--~~~~-~~~~~~SPDG~~La~~~~~~g-------~~~I~~~d~~tg~~~~lt~~-----~~ 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS--FPRH-NGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLASGQIRQVTDG-----RS 287 (429)
T ss_pred cEEEEEECCCCCeEEccC--CCCC-cCCeEECCCCCEEEEEEcCCC-------CcEEEEEECCCCCEEEccCC-----CC
Confidence 468999998887666654 2211 1111111234 5555433221 24699999999887776543 11
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecc
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG 314 (602)
.-........+..|++.....+ ...+|.+|+.+..-.++...+ .........-+++.++|.+
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g--------------~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAG--------------RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCC--------------CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEE
Confidence 1111111111334443322211 136899999887766664321 1111111122444444433
Q ss_pred ccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.... ...|+++|+.+..+..+..
T Consensus 350 ~~~g-----------~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 350 SNGG-----------QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ccCC-----------CceEEEEECCCCCeEEeCC
Confidence 2210 2469999999998876653
No 86
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.13 E-value=12 Score=38.79 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=44.7
Q ss_pred CcEEEEEcC-CCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc--EEEcccCC
Q 007468 101 GDLYRYDVE-KQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ--WEQLNLKG 175 (602)
Q Consensus 101 ~dv~~yd~~-~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W~~~~~~~ 175 (602)
+.+..|++. ++++..+.... .+...+.++.. +..||+..-. .+.+.+|++.++. ...+..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~-----------~~~v~v~~~~~~g~~~~~~~~-- 121 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYN-----------ANCVSVSPLDKDGIPVAPIQI-- 121 (330)
T ss_pred CcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcC-----------CCeEEEEEECCCCCCCCceee--
Confidence 467777776 45676554322 11111223232 3456665421 2456677765321 111211
Q ss_pred CCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCC
Q 007468 176 CPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 176 ~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t 218 (602)
.+....-|.+++. ++.||+..-. .+.|.+||+.+
T Consensus 122 ~~~~~~~~~~~~~p~g~~l~v~~~~---------~~~v~v~d~~~ 157 (330)
T PRK11028 122 IEGLEGCHSANIDPDNRTLWVPCLK---------EDRIRLFTLSD 157 (330)
T ss_pred ccCCCcccEeEeCCCCCEEEEeeCC---------CCEEEEEEECC
Confidence 1222233555444 3466664321 36789999876
No 87
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.84 E-value=12 Score=40.53 Aligned_cols=145 Identities=6% Similarity=-0.009 Sum_probs=78.5
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-C-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~-~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..+|++|+.+++-+.+.... ....+.... + ..|++..-... ..++|+||+.+..+..+... +.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~~ 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG---------NPEIYVMDLASRQLSRVTNH--PA 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC---------CceEEEEECCCCCeEEcccC--CC
Confidence 47999999998887775421 111112222 3 44544322111 25799999999998877541 11
Q ss_pred CCcccEEEEEC-CEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEcCcc
Q 007468 179 PRSGHRMVLYK-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGYS 255 (602)
Q Consensus 179 ~R~~h~~~~~~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~--~~~~Iyv~GG~~ 255 (602)
........-+ .+||+.....+ ...+|.+++.+..++.+... . ........ .+..|++.....
T Consensus 288 -~~~~~~~spDg~~i~f~s~~~g-------~~~iy~~d~~~g~~~~lt~~-----~--~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 288 -IDTEPFWGKDGRTLYFTSDRGG-------KPQIYKVNVNGGRAERVTFV-----G--NYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred -CcCCeEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEeecC-----C--CCccceEECCCCCEEEEEEccC
Confidence 1111111223 35554422111 25799999999888887543 1 11111122 245555543322
Q ss_pred CCCCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
+ ...++++|+.+..++.+..
T Consensus 353 ~--------------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 353 G--------------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred C--------------ceEEEEEECCCCCEEEccC
Confidence 1 1249999999988887754
No 88
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.83 E-value=0.13 Score=60.53 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=5.5
Q ss_pred hhhHHHHHHHH
Q 007468 574 RRKEKRARIEQ 584 (602)
Q Consensus 574 ~~~~~~~~~~~ 584 (602)
+||..|...++
T Consensus 758 ~k~~~~~~~~~ 768 (784)
T PF04931_consen 758 RKKDAKEAKEN 768 (784)
T ss_pred hhhHHHHHHHH
Confidence 34455555554
No 89
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=92.79 E-value=0.029 Score=59.26 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=12.1
Q ss_pred eeecchhhcccCCCCccEEeecCChhh
Q 007468 480 ITLDDLYSLNLSKLDEWKCIIPASESE 506 (602)
Q Consensus 480 ~~l~Dl~~ldl~~~~~W~~~~~~~~~~ 506 (602)
+|++|+-. |=+....|.+.-..|
T Consensus 26 lTi~Dtlk----KE~~IRkLgeEaEEE 48 (458)
T PF10446_consen 26 LTINDTLK----KENAIRKLGEEAEEE 48 (458)
T ss_pred ccHHHHHH----HHHHHhhhhHHHHHH
Confidence 78888843 323445555443333
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.53 E-value=12 Score=37.29 Aligned_cols=95 Identities=15% Similarity=0.006 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCcEE-EecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~-~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
+.+++||+.+..-. .+... ...++++.. ++.+++++.... +.++.||..+..-..... ..
T Consensus 95 ~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~----------~~~~~~d~~~~~~~~~~~---~~ 156 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIPVG-----VEPEGMAVSPDGKIVVNTSETT----------NMAHFIDTKTYEIVDNVL---VD 156 (300)
T ss_pred CeEEEEECCCCeEEeEeeCC-----CCcceEEECCCCCEEEEEecCC----------CeEEEEeCCCCeEEEEEE---cC
Confidence 46888998875432 22211 111223332 455666654321 235567876654322111 11
Q ss_pred CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
.+..+.+..-+++.+++++.. -..+..||+.+.+.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~--------~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEI--------GGTVSVIDVATRKV 191 (300)
T ss_pred CCccEEEECCCCCEEEEEcCC--------CCEEEEEEcCccee
Confidence 111222222344444444321 24588899887643
No 91
>PRK02889 tolB translocation protein TolB; Provisional
Probab=92.37 E-value=16 Score=39.80 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=73.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~ 232 (602)
..+|++|+.+.+=..+.. .+. ...+..+ ++ +|++.....+ ..++|.+|+.+.....+...
T Consensus 220 ~~I~~~dl~~g~~~~l~~--~~g---~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~d~~~~~~~~lt~~----- 282 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN--FKG---SNSAPAWSPDGRTLAVALSRDG-------NSQIYTVNADGSGLRRLTQS----- 282 (427)
T ss_pred cEEEEEECCCCCEEEeec--CCC---CccceEECCCCCEEEEEEccCC-------CceEEEEECCCCCcEECCCC-----
Confidence 469999998886555543 121 1112233 34 5554433222 35799999987776665443
Q ss_pred CCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEE
Q 007468 233 PSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALL 311 (602)
Q Consensus 233 P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv 311 (602)
.......+....+..|++.....+ ...+|.++..+...+++...+ ....+..+. +++.++
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g--------------~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGG--------------APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLA 343 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCC--------------CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEE
Confidence 111111121111344554322211 135889998877777775322 111122222 444444
Q ss_pred eccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 312 ~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
+....+. ...|+++|+.+.....+.
T Consensus 344 ~~s~~~g-----------~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 344 YISRVGG-----------AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEccCC-----------cEEEEEEECCCCCeEEcc
Confidence 4332210 136999999888776654
No 92
>PRK13684 Ycf48-like protein; Provisional
Probab=92.16 E-value=17 Score=38.15 Aligned_cols=186 Identities=11% Similarity=0.097 Sum_probs=90.0
Q ss_pred CCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCce-eeEEEEECCEEEEEeCccCC
Q 007468 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRS-AHQAVSWKNYLYIFGGEFTS 146 (602)
Q Consensus 68 ~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~-~hs~~~~~~~iyV~GG~~~~ 146 (602)
...-..+++.. .++.|++|-. ..|++=.=.-.+|+.+.... |.... ..+..+.++..|+.|..
T Consensus 45 ~~~l~~v~F~d--~~~g~avG~~----------G~il~T~DgG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~--- 108 (334)
T PRK13684 45 EANLLDIAFTD--PNHGWLVGSN----------RTLLETNDGGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP--- 108 (334)
T ss_pred CCceEEEEEeC--CCcEEEEECC----------CEEEEEcCCCCCceECccCC-cccccceeeeEEcCCcEEEeCCC---
Confidence 33344455552 4566776631 13333222345899875432 22222 22233335556666521
Q ss_pred CCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEec
Q 007468 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIK 225 (602)
Q Consensus 147 ~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~ 225 (602)
..+++=.=.-.+|+.+... ...+........+ .+.+|+.|.. ..+++-+-.-.+|+.+.
T Consensus 109 ---------g~i~~S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~~~~~~g~~----------G~i~~S~DgG~tW~~~~ 168 (334)
T PRK13684 109 ---------SLLLHTTDGGKNWTRIPLS-EKLPGSPYLITALGPGTAEMATNV----------GAIYRTTDGGKNWEALV 168 (334)
T ss_pred ---------ceEEEECCCCCCCeEccCC-cCCCCCceEEEEECCCcceeeecc----------ceEEEECCCCCCceeCc
Confidence 1232222223589988642 1112222223333 3445655442 23444433457899886
Q ss_pred cCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEE-eCCCCeeEEeecCCCCCCCCceeEEEE
Q 007468 226 PRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSL-DPRTWEWSKVKKIGMPPGPRAGFSMCV 304 (602)
Q Consensus 226 ~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~y-d~~t~~W~~l~~~g~~P~~R~~~s~~~ 304 (602)
.. ..-..+.+....+..|++.|..+. ++.. +....+|+.+.. +..+..+++++
T Consensus 169 ~~------~~g~~~~i~~~~~g~~v~~g~~G~----------------i~~s~~~gg~tW~~~~~----~~~~~l~~i~~ 222 (334)
T PRK13684 169 ED------AAGVVRNLRRSPDGKYVAVSSRGN----------------FYSTWEPGQTAWTPHQR----NSSRRLQSMGF 222 (334)
T ss_pred CC------CcceEEEEEECCCCeEEEEeCCce----------------EEEEcCCCCCeEEEeeC----CCcccceeeeE
Confidence 54 222344555554444555444443 3332 344568998854 34455555555
Q ss_pred E-CCeEEEeccc
Q 007468 305 H-KKRALLFGGV 315 (602)
Q Consensus 305 ~-~~~lyv~GG~ 315 (602)
. +++++++|..
T Consensus 223 ~~~g~~~~vg~~ 234 (334)
T PRK13684 223 QPDGNLWMLARG 234 (334)
T ss_pred cCCCCEEEEecC
Confidence 4 6778888653
No 93
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.76 E-value=18 Score=37.52 Aligned_cols=128 Identities=9% Similarity=0.031 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCc--EEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEcccC-
Q 007468 101 GDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLK- 174 (602)
Q Consensus 101 ~dv~~yd~~~~~--W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~~~~~- 174 (602)
+.+.+|++.++. ...+.. .+.....|++++. +..+|+..-. .+.+++||+.+. ........
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~p~g~~l~v~~~~-----------~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANIDPDNRTLWVPCLK-----------EDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CeEEEEEECCCCCCCCceee--ccCCCcccEeEeCCCCCEEEEeeCC-----------CCEEEEEEECCCCcccccCCCc
Confidence 466777775331 112211 1122234555444 3466665421 356889998763 22110000
Q ss_pred -CCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECC--CCceEEec---cCCCCCCCCCccceeEEEe--
Q 007468 175 -GCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLD--QFKWQEIK---PRFGSMWPSPRSGFQFFVY-- 244 (602)
Q Consensus 175 -~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~--t~~W~~v~---~~~~~~~P~~R~~~~~~~~-- 244 (602)
..+....-+.++.. +.++|+.-.. .+.+.+|++. +.+.+.+. ..|. ..+.+|....+.+.
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~---------~~~v~v~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNEL---------NSSVDVWQLKDPHGEIECVQTLDMMPA-DFSDTRWAADIHITPD 238 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecC---------CCEEEEEEEeCCCCCEEEEEEEecCCC-cCCCCccceeEEECCC
Confidence 01111111223333 3478886432 3567777765 44544332 2211 12334444334433
Q ss_pred CCEEEEE
Q 007468 245 QDEVFLY 251 (602)
Q Consensus 245 ~~~Iyv~ 251 (602)
+..||+.
T Consensus 239 g~~lyv~ 245 (330)
T PRK11028 239 GRHLYAC 245 (330)
T ss_pred CCEEEEe
Confidence 4567775
No 94
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.73 E-value=22 Score=38.35 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=85.6
Q ss_pred CeEEEEECCCC-----cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc---eEEeccC
Q 007468 156 KDFWMLDLKTN-----QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK---WQEIKPR 227 (602)
Q Consensus 156 ~dv~~yd~~t~-----~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~---W~~v~~~ 227 (602)
+.+|.+++... .|..+.+ +..-..+.+...++.+|+...... ....|..+++.+.. |..+-..
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~~~v~~~~~~~yi~Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP---REDGVEYYVDHHGDRLYILTNDDA------PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE---SSSS-EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeC---CCCceEEEEEccCCEEEEeeCCCC------CCcEEEEecccccccccceeEEcC
Confidence 78999999875 7888765 222223334455899999876332 24578889988765 6643332
Q ss_pred CCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC-CCeeEEeecCCCCCCCCceeEEEEE-
Q 007468 228 FGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVH- 305 (602)
Q Consensus 228 ~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~~~g~~P~~R~~~s~~~~- 305 (602)
+ .....-..+.+.++.|++.-=.+ ....+.+|++. +..-..++. |. .+....+.
T Consensus 323 ~----~~~~~l~~~~~~~~~Lvl~~~~~--------------~~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~~ 378 (414)
T PF02897_consen 323 E----DEDVSLEDVSLFKDYLVLSYREN--------------GSSRLRVYDLDDGKESREIPL----PE--AGSVSGVSG 378 (414)
T ss_dssp -----SSSEEEEEEEEETTEEEEEEEET--------------TEEEEEEEETT-TEEEEEEES----SS--SSEEEEEES
T ss_pred C----CCceeEEEEEEECCEEEEEEEEC--------------CccEEEEEECCCCcEEeeecC----Cc--ceEEeccCC
Confidence 0 12233445556688888765433 24568899988 433333322 22 22212222
Q ss_pred ---CCe-EEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 306 ---KKR-ALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 306 ---~~~-lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.+. .|.+.+... -..+|.||+.+++.+.+..
T Consensus 379 ~~~~~~~~~~~ss~~~------------P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 379 DFDSDELRFSYSSFTT------------PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp -TT-SEEEEEEEETTE------------EEEEEEEETTTTCEEEEEE
T ss_pred CCCCCEEEEEEeCCCC------------CCEEEEEECCCCCEEEEEe
Confidence 233 444555543 4679999999998887653
No 95
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.11 E-value=17 Score=35.98 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=86.1
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC---CCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCe
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN---SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~---~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
++.|||... ..+.++|+.+++++.+.... .+..|..-.++.-++.||+.--....... .....
T Consensus 51 ~g~l~v~~~-----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~---~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADS-----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASG---IDPGS 116 (246)
T ss_dssp TSEEEEEET-----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTC---GGSEE
T ss_pred CCEEEEEEc-----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccc---ccccc
Confidence 578887765 24467799999999776531 13334444444446788876422111110 00157
Q ss_pred EEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEeccCCCCCCC
Q 007468 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWP 233 (602)
Q Consensus 158 v~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~P 233 (602)
+|++++. .+...+... + ..-.+.+.. ++.||+.-- ..+.|++|++.... +...... ...+
T Consensus 117 v~~~~~~-~~~~~~~~~-~---~~pNGi~~s~dg~~lyv~ds---------~~~~i~~~~~~~~~~~~~~~~~~--~~~~ 180 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADG-L---GFPNGIAFSPDGKTLYVADS---------FNGRIWRFDLDADGGELSNRRVF--IDFP 180 (246)
T ss_dssp EEEEETT-SEEEEEEEE-E---SSEEEEEEETTSSEEEEEET---------TTTEEEEEEEETTTCCEEEEEEE--EE-S
T ss_pred eEEECCC-CeEEEEecC-c---ccccceEECCcchheeeccc---------ccceeEEEeccccccceeeeeeE--EEcC
Confidence 9999998 666655431 1 112344444 346777422 24679999986433 3322211 0001
Q ss_pred CC-ccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 234 SP-RSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 234 ~~-R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
.. ..--++++- ++.|||..-..+ .|++|++....-..+.
T Consensus 181 ~~~g~pDG~~vD~~G~l~va~~~~~----------------~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNLWVADWGGG----------------RIVVFDPDGKLLREIE 221 (246)
T ss_dssp SSSCEEEEEEEBTTS-EEEEEETTT----------------EEEEEETTSCEEEEEE
T ss_pred CCCcCCCcceEcCCCCEEEEEcCCC----------------EEEEECCCccEEEEEc
Confidence 11 112234444 789999743222 3999999966666664
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.70 E-value=28 Score=37.70 Aligned_cols=135 Identities=18% Similarity=0.237 Sum_probs=70.8
Q ss_pred EEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEcccCCCCCCCcccEEEEE-C-CEEEEEcCccCCCCCeee
Q 007468 131 VSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKGCPSPRSGHRMVLY-K-HKIIVFGGFYDTLREVRY 207 (602)
Q Consensus 131 ~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~~~~~~~p~~R~~h~~~~~-~-~~Lyv~GG~~~~~~~~~~ 207 (602)
...+++|++.||++. .+-.||+.+. .|..--.-+.|.. .++.+ + ..|...||
T Consensus 162 ~~~~~hivvtGsYDg-----------~vrl~DtR~~~~~v~elnhg~pVe----~vl~lpsgs~iasAgG---------- 216 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDG-----------KVRLWDTRSLTSRVVELNHGCPVE----SVLALPSGSLIASAGG---------- 216 (487)
T ss_pred ccCCCeEEEecCCCc-----------eEEEEEeccCCceeEEecCCCcee----eEEEcCCCCEEEEcCC----------
Confidence 334788999999864 3567777766 4543222222221 12222 3 44555555
Q ss_pred eceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEE
Q 007468 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSK 286 (602)
Q Consensus 208 ~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 286 (602)
|.+-++|+.++.= .+..+. .....--++... ++.-.+-||.+.. +-+|| +..|..
T Consensus 217 -n~vkVWDl~~G~q-ll~~~~----~H~KtVTcL~l~s~~~rLlS~sLD~~----------------VKVfd--~t~~Kv 272 (487)
T KOG0310|consen 217 -NSVKVWDLTTGGQ-LLTSMF----NHNKTVTCLRLASDSTRLLSGSLDRH----------------VKVFD--TTNYKV 272 (487)
T ss_pred -CeEEEEEecCCce-ehhhhh----cccceEEEEEeecCCceEeecccccc----------------eEEEE--ccceEE
Confidence 5677888765421 111110 011111122222 5577788888876 77887 344555
Q ss_pred eecCCCCCCCCceeEEEE-ECCeEEEeccccc
Q 007468 287 VKKIGMPPGPRAGFSMCV-HKKRALLFGGVVD 317 (602)
Q Consensus 287 l~~~g~~P~~R~~~s~~~-~~~~lyv~GG~~~ 317 (602)
+..+.. |.|- .++++ .++..+++|..++
T Consensus 273 v~s~~~-~~pv--Lsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 273 VHSWKY-PGPV--LSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEeeec-ccce--eeEEecCCCceEEEecccc
Confidence 554432 3332 23333 3778888888765
No 97
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.34 E-value=26 Score=39.40 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=65.6
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCC---C---CCCcccEEEEECCEEEEEcCccC
Q 007468 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGC---P---SPRSGHRMVLYKHKIIVFGGFYD 200 (602)
Q Consensus 129 s~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~---p---~~R~~h~~~~~~~~Lyv~GG~~~ 200 (602)
+-++.++.||+.... ..++.+|..+. .|+.-..... + ......+.++.+++||+...
T Consensus 64 tPvv~~g~vyv~s~~------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--- 128 (527)
T ss_pred CCEEECCEEEEECCC------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---
Confidence 345568999986542 35788888876 4875432110 1 00112234566788886322
Q ss_pred CCCCeeeeceEEEEECCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEe
Q 007468 201 TLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD 278 (602)
Q Consensus 201 ~~~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd 278 (602)
-..|++||..|.+ |+.-..... .......+-++.++.||+-...... .....|+.||
T Consensus 129 -------dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~~g~Vivg~~~~~~-----------~~~G~v~AlD 187 (527)
T TIGR03075 129 -------DARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVVKGKVITGISGGEF-----------GVRGYVTAYD 187 (527)
T ss_pred -------CCEEEEEECCCCCEEeeccccccc---ccccccCCcEEECCEEEEeeccccc-----------CCCcEEEEEE
Confidence 2469999998865 875432200 0011222335568887775322111 1234588888
Q ss_pred CCCC--eeEEe
Q 007468 279 PRTW--EWSKV 287 (602)
Q Consensus 279 ~~t~--~W~~l 287 (602)
+.+. .|+.-
T Consensus 188 ~~TG~~lW~~~ 198 (527)
T TIGR03075 188 AKTGKLVWRRY 198 (527)
T ss_pred CCCCceeEecc
Confidence 8765 46643
No 98
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.32 E-value=17 Score=38.20 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=87.7
Q ss_pred CCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCc--EEEecCCCCC---CCceeeEEEEE-CCEEEEEe
Q 007468 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSP---PPRSAHQAVSW-KNYLYIFG 141 (602)
Q Consensus 68 ~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~--W~~l~~~~~P---~~R~~hs~~~~-~~~iyV~G 141 (602)
.-..|.+.+.|. +..+||..= + .+.|++|+..... +........| -|| |.+..- +..+||..
T Consensus 143 ~~h~H~v~~~pd-g~~v~v~dl----G-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 143 GPHPHQVVFSPD-GRFVYVPDL----G-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVN 210 (345)
T ss_dssp STCEEEEEE-TT-SSEEEEEET----T-----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEE
T ss_pred cccceeEEECCC-CCEEEEEec----C-----CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEec
Confidence 345677777773 355666431 2 2578888887765 5442221122 233 222222 46899987
Q ss_pred CccCCCCCCcceecCeEEEEECC--CCcEEEcccCC-CCC---CC-cccEEEEE--CCEEEEEcCccCCCCCeeeeceEE
Q 007468 142 GEFTSPNQERFHHYKDFWMLDLK--TNQWEQLNLKG-CPS---PR-SGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 142 G~~~~~~~~~~~~~~dv~~yd~~--t~~W~~~~~~~-~p~---~R-~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
-. .+.+.+|+.. +..|+.+.... .|. .. ..+..++. +++|||--.. .+.|.
T Consensus 211 e~-----------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---------~~sI~ 270 (345)
T PF10282_consen 211 EL-----------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---------SNSIS 270 (345)
T ss_dssp TT-----------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---------TTEEE
T ss_pred CC-----------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---------CCEEE
Confidence 54 2445555444 66665543311 222 22 22233333 5678885332 46777
Q ss_pred EEEC--CCCceEEeccCCCCCCCCCccceeEEE--eCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 213 VFDL--DQFKWQEIKPRFGSMWPSPRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 213 ~yd~--~t~~W~~v~~~~~~~~P~~R~~~~~~~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
+|++ .+..-+.+...+.+ ...||. +++ .+..|||....+.. -.+|..|..+..++.+.
T Consensus 271 vf~~d~~~g~l~~~~~~~~~-G~~Pr~---~~~s~~g~~l~Va~~~s~~--------------v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTG-GKFPRH---FAFSPDGRYLYVANQDSNT--------------VSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEEEEEEEEES-SSSEEE---EEE-TTSSEEEEEETTTTE--------------EEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceEEEEEEeCC-CCCccE---EEEeCCCCEEEEEecCCCe--------------EEEEEEeCCCCcEEEec
Confidence 7776 44566655544210 123443 333 36677776554433 23555677888888885
Q ss_pred c
Q 007468 289 K 289 (602)
Q Consensus 289 ~ 289 (602)
.
T Consensus 333 ~ 333 (345)
T PF10282_consen 333 S 333 (345)
T ss_dssp E
T ss_pred c
Confidence 4
No 99
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.26 E-value=8 Score=40.24 Aligned_cols=143 Identities=18% Similarity=0.272 Sum_probs=84.1
Q ss_pred CEEEEEcceecCCCCceee-CcEEEEEcCCC-----cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceec
Q 007468 82 TELILYGGEFYNGNKTYVY-GDLYRYDVEKQ-----EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~-~dv~~yd~~~~-----~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~ 155 (602)
..++++|-....+...... ..++.|++... +++.+.... .+-.-++++.++++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~--~~g~V~ai~~~~~~lv~~~g------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE--VKGPVTAICSFNGRLVVAVG------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE--ESS-EEEEEEETTEEEEEET-------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe--ecCcceEhhhhCCEEEEeec-------------
Confidence 5678888765444433233 78999999985 666554432 23335667777888666655
Q ss_pred CeEEEEECCCCc-EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~-W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
+.+.+|++.... +..... ...+-...++.+.+++|+| |-... .-.++.|+....+-..++.. +.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~--~~~~~~i~sl~~~~~~I~v-gD~~~-------sv~~~~~~~~~~~l~~va~d-----~~ 171 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAF--YDSPFYITSLSVFKNYILV-GDAMK-------SVSLLRYDEENNKLILVARD-----YQ 171 (321)
T ss_dssp TEEEEEEEETTSSEEEEEE--E-BSSSEEEEEEETTEEEE-EESSS-------SEEEEEEETTTE-EEEEEEE-----SS
T ss_pred CEEEEEEccCcccchhhhe--ecceEEEEEEeccccEEEE-EEccc-------CEEEEEEEccCCEEEEEEec-----CC
Confidence 356777777777 877766 3334455566667886664 43221 12355667766666777665 55
Q ss_pred CccceeEEEe-CCEEEEEcCc
Q 007468 235 PRSGFQFFVY-QDEVFLYGGY 254 (602)
Q Consensus 235 ~R~~~~~~~~-~~~Iyv~GG~ 254 (602)
++...++..+ ++..++.+=.
T Consensus 172 ~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 172 PRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp -BEEEEEEEE-SSSEEEEEET
T ss_pred CccEEEEEEecCCcEEEEEcC
Confidence 7776677666 5444444433
No 100
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.26 E-value=53 Score=40.28 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=86.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCC-----------CCCcccEEEEE--CCEEEEEcCccC
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP-----------SPRSGHRMVLY--KHKIIVFGGFYD 200 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p-----------~~R~~h~~~~~--~~~Lyv~GG~~~ 200 (602)
++.|||.... .+.+++||+.+.....+...+.. ....-+++++. ++.|||.-..
T Consensus 694 ~g~LyVad~~-----------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-- 760 (1057)
T ss_pred CCeEEEEECC-----------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--
Confidence 5678877532 35688999888766544322110 01112233333 3468887543
Q ss_pred CCCCeeeeceEEEEECCCCceEEeccCC----C---------CCCCCCccc--eeEEEe-CCEEEEEcCccCCCCCccCC
Q 007468 201 TLREVRYYNDLYVFDLDQFKWQEIKPRF----G---------SMWPSPRSG--FQFFVY-QDEVFLYGGYSKEVSTDKNQ 264 (602)
Q Consensus 201 ~~~~~~~~~~v~~yd~~t~~W~~v~~~~----~---------~~~P~~R~~--~~~~~~-~~~Iyv~GG~~~~~~~~~~~ 264 (602)
.+.|.+||+.+.....+.... . +.....+.. .++++. ++.|||.-..+..
T Consensus 761 -------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r------- 826 (1057)
T PLN02919 761 -------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK------- 826 (1057)
T ss_pred -------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-------
Confidence 367999998876543322100 0 000000011 123333 6779988766544
Q ss_pred CCCCceeeeEEEEeCCCCeeEEeecCCCC-------CCCC--ceeEEEEE-CCeEEEeccccccccccccccccccCeeE
Q 007468 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMP-------PGPR--AGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (602)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~l~~~g~~-------P~~R--~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~ 334 (602)
|.+||+.+...+.+...|.. .... .-+++++. +++|||.-.. -+.|.
T Consensus 827 ---------IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~--------------Nn~Ir 883 (1057)
T PLN02919 827 ---------IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN--------------NSLIR 883 (1057)
T ss_pred ---------EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC--------------CCEEE
Confidence 88999998888777654421 0011 11234443 6788887543 35689
Q ss_pred EEECCCCc
Q 007468 335 GFQLDNHR 342 (602)
Q Consensus 335 ~yd~~t~~ 342 (602)
++|+.+.+
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99998875
No 101
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.00 E-value=33 Score=37.42 Aligned_cols=168 Identities=8% Similarity=-0.017 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..+|++++.+++-+.+.... . ...+.+.. +..|++...... ..++|++|+.+....++... +
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~--~--~~~~~~~SPDG~~La~~~~~~g---------~~~I~~~d~~tg~~~~lt~~--~- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP--R--HNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDG--R- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC--C--CcCCeEECCCCCEEEEEEcCCC---------CcEEEEEECCCCCEEEccCC--C-
Confidence 46889999888777665421 1 11111221 345555432211 24699999999888777542 1
Q ss_pred CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccC
Q 007468 179 PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSK 256 (602)
Q Consensus 179 ~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~ 256 (602)
.......+ +++.++|...... ...+|.+|+.+.....+... ............+..|++.+...+
T Consensus 287 --~~~~~~~wSPDG~~I~f~s~~~g------~~~Iy~~d~~~g~~~~lt~~-----~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 287 --SNNTEPTWFPDSQNLAYTSDQAG------RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred --CCcCceEECCCCCEEEEEeCCCC------CceEEEEECCCCCeEEeecC-----CCCccCEEECCCCCEEEEEEccCC
Confidence 12223333 4444444332111 24789999988777666433 111111111112445544443221
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccc
Q 007468 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (602)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~ 316 (602)
. ..++.+|+.+..++.+.... ........-+++.++|.+..
T Consensus 354 ~--------------~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 354 Q--------------QHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred C--------------ceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcC
Confidence 1 35889999999888876321 11111122366666766543
No 102
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.93 E-value=5.7 Score=40.10 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=93.5
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEE
Q 007468 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 133 ~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
.++.||.--|..+ -+.+.+||+.+++-..... +|..-.+-++++++++||..-=. ....+
T Consensus 54 ~~g~LyESTG~yG---------~S~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk---------~~~~f 113 (264)
T PF05096_consen 54 DDGTLYESTGLYG---------QSSLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWK---------EGTGF 113 (264)
T ss_dssp ETTEEEEEECSTT---------EEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS---------SSEEE
T ss_pred CCCEEEEeCCCCC---------cEEEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEec---------CCeEE
Confidence 4689998888654 3678899999998665544 67777888999999999998554 35789
Q ss_pred EEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe---ec
Q 007468 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV---KK 289 (602)
Q Consensus 213 ~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l---~~ 289 (602)
+||+.+. +.+... +.+..|-+++..+..||+--|.+ .++.+||.+.+=.+- ..
T Consensus 114 ~yd~~tl--~~~~~~-----~y~~EGWGLt~dg~~Li~SDGS~-----------------~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 114 VYDPNTL--KKIGTF-----PYPGEGWGLTSDGKRLIMSDGSS-----------------RLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EEETTTT--EEEEEE-----E-SSS--EEEECSSCEEEE-SSS-----------------EEEEE-TTT-SEEEEEE-EE
T ss_pred EEccccc--eEEEEE-----ecCCcceEEEcCCCEEEEECCcc-----------------ceEEECCcccceEEEEEEEE
Confidence 9999864 555554 45568888888888999988843 388899886543221 11
Q ss_pred CCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCceE
Q 007468 290 IGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 290 ~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
.| .|..+ --=+-++++.||.= . -..+.|.+.||.++.=.
T Consensus 170 ~g-~pv~~-LNELE~i~G~IyAN---V-----------W~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 170 NG-RPVSN-LNELEYINGKIYAN---V-----------WQTDRIVRIDPETGKVV 208 (264)
T ss_dssp TT-EE----EEEEEEETTEEEEE---E-----------TTSSEEEEEETTT-BEE
T ss_pred CC-EECCC-cEeEEEEcCEEEEE---e-----------CCCCeEEEEeCCCCeEE
Confidence 11 12111 12233445655541 0 12467899999988543
No 103
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.91 E-value=33 Score=37.34 Aligned_cols=194 Identities=13% Similarity=0.163 Sum_probs=104.1
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEEC-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~-~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
.++|++|+.+++=+.+... ..........-+ .+|++.-.... ..++|++|+.+..++++.. .+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~---~g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~dl~~g~~~~LT~--~~~- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS---QGMLVVSDVSKDGSKLLLTMAPKG---------QPDIYLYDTNTKTLTQITN--YPG- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecC---CCcEEeeEECCCCCEEEEEEccCC---------CcEEEEEECCCCcEEEccc--CCC-
Confidence 4899999998877777642 111221222223 45554433211 2589999999999998865 221
Q ss_pred CcccEEEE-E-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCC
Q 007468 180 RSGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (602)
Q Consensus 180 R~~h~~~~-~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~ 257 (602)
..+.... - +.+||+.-...+ ..++|++|+.+...+++... + .........+..|.+.......
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g-------~~~Iy~~dl~~g~~~rlt~~--g-----~~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG-------YPNIFMKKLNSGSVEQVVFH--G-----KNNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEeCccC--C-----CcCceECCCCCEEEEEEcCCCc
Confidence 1111111 1 446666543321 35899999999888777553 1 1122222224455444332211
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEE
Q 007468 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQ 337 (602)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd 337 (602)
.......+++++|+.+..++.+...+ ...+-...-+++.++|-.... ....++.++
T Consensus 343 --------~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~-----------~~~~L~~~~ 398 (419)
T PRK04043 343 --------EFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYLG-----------NQSALGIIR 398 (419)
T ss_pred --------ccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEccC-----------CcEEEEEEe
Confidence 00111357999999999998886532 111111222455444432211 134688888
Q ss_pred CCCCceEEeEe
Q 007468 338 LDNHRWYPLEL 348 (602)
Q Consensus 338 ~~t~~W~~l~~ 348 (602)
+..+.=..++.
T Consensus 399 l~g~~~~~l~~ 409 (419)
T PRK04043 399 LNYNKSFLFPL 409 (419)
T ss_pred cCCCeeEEeec
Confidence 87765555554
No 104
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=89.58 E-value=0.1 Score=43.29 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=2.3
Q ss_pred CCCChhH
Q 007468 557 LQMGDAV 563 (602)
Q Consensus 557 ~~~~~~~ 563 (602)
+.++.|.
T Consensus 44 p~fgea~ 50 (101)
T PF09026_consen 44 PEFGEAM 50 (101)
T ss_dssp --HHHHH
T ss_pred hhHHHHH
Confidence 3444444
No 105
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.25 E-value=30 Score=36.45 Aligned_cols=194 Identities=15% Similarity=0.110 Sum_probs=92.0
Q ss_pred EEEEEcCCCcEEEecCCCCCCCceeeEEEE--ECCEEEEEeCccCCCCCCcceecCeEE--EEECCCCcEEEcccCCCCC
Q 007468 103 LYRYDVEKQEWKVISSPNSPPPRSAHQAVS--WKNYLYIFGGEFTSPNQERFHHYKDFW--MLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 103 v~~yd~~~~~W~~l~~~~~P~~R~~hs~~~--~~~~iyV~GG~~~~~~~~~~~~~~dv~--~yd~~t~~W~~~~~~~~p~ 178 (602)
++.||..+.++..+.... ....-.+ ++. -++.||+....... ...+. .++..+.+.+.+.. .+.
T Consensus 17 ~~~~d~~~g~l~~~~~~~-~~~~Ps~-l~~~~~~~~LY~~~e~~~~--------~g~v~~~~i~~~~g~L~~~~~--~~~ 84 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVA-EGENPSW-LAVSPDGRRLYVVNEGSGD--------SGGVSSYRIDPDTGTLTLLNS--VPS 84 (345)
T ss_dssp EEEEETTTTEEEEEEEEE-ESSSECC-EEE-TTSSEEEEEETTSST--------TTEEEEEEEETTTTEEEEEEE--EEE
T ss_pred EEEEcCCCCCceEeeeec-CCCCCce-EEEEeCCCEEEEEEccccC--------CCCEEEEEECCCcceeEEeee--ecc
Confidence 455666899998665311 0111111 222 25789988654311 13344 44555567877765 332
Q ss_pred CCcccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEECCCC-ceEEec-------cCCCCCCCCCccceeEEEe--C
Q 007468 179 PRSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF-KWQEIK-------PRFGSMWPSPRSGFQFFVY--Q 245 (602)
Q Consensus 179 ~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~-~W~~v~-------~~~~~~~P~~R~~~~~~~~--~ 245 (602)
.....+.+.+ ++.||+.- +. ...+.+|++..+ .-.... ..+.......-.-|++... +
T Consensus 85 ~g~~p~~i~~~~~g~~l~van-y~--------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVAN-YG--------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEE-TT--------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred CCCCcEEEEEecCCCEEEEEE-cc--------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 2222233333 44566642 21 245777777653 211110 0100000122233555444 4
Q ss_pred CEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe--eEEeecCCCCCCCCceeEEEEE--CCeEEEeccccccccc
Q 007468 246 DEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE--WSKVKKIGMPPGPRAGFSMCVH--KKRALLFGGVVDMEMK 321 (602)
Q Consensus 246 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~~s~~~~--~~~lyv~GG~~~~~~~ 321 (602)
..+|+..=- .+.|++|+..... .+....... |..-.-..+++. +..+||+.-.
T Consensus 156 ~~v~v~dlG----------------~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~------ 212 (345)
T PF10282_consen 156 RFVYVPDLG----------------ADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNEL------ 212 (345)
T ss_dssp SEEEEEETT----------------TTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETT------
T ss_pred CEEEEEecC----------------CCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCC------
Confidence 577775321 2347777776554 555333211 222122244454 4578888654
Q ss_pred cccccccccCeeEEEECC--CCceEEeEe
Q 007468 322 GDVIMSLFLNELYGFQLD--NHRWYPLEL 348 (602)
Q Consensus 322 ~~~~~~~~~ndv~~yd~~--t~~W~~l~~ 348 (602)
.+.|.+|+.. +..|+.+..
T Consensus 213 --------s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 213 --------SNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp --------TTEEEEEEEETTTTEEEEEEE
T ss_pred --------CCcEEEEeecccCCceeEEEE
Confidence 3567777666 667776665
No 106
>PLN00181 protein SPA1-RELATED; Provisional
Probab=89.02 E-value=34 Score=40.51 Aligned_cols=91 Identities=10% Similarity=0.031 Sum_probs=46.3
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCce-EEeccCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW-QEIKPRFGSMW 232 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W-~~v~~~~~~~~ 232 (602)
..+.+||+.+.+....-. ... ..-.+++.. ++.+++.||.+ ..+.+||+.+..- ..+...
T Consensus 555 g~v~lWd~~~~~~~~~~~--~H~-~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~~~~~~~~~----- 617 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMK--EHE-KRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGVSIGTIKTK----- 617 (793)
T ss_pred CeEEEEECCCCeEEEEec--CCC-CCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCcEEEEEecC-----
Confidence 357788887764322111 111 111222222 45677777754 3577888866432 222111
Q ss_pred CCCccceeEEE--eCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCC
Q 007468 233 PSPRSGFQFFV--YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (602)
Q Consensus 233 P~~R~~~~~~~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (602)
.. -.++.. .++.++++|+.++. +.+||+.+.
T Consensus 618 -~~--v~~v~~~~~~g~~latgs~dg~----------------I~iwD~~~~ 650 (793)
T PLN00181 618 -AN--ICCVQFPSESGRSLAFGSADHK----------------VYYYDLRNP 650 (793)
T ss_pred -CC--eEEEEEeCCCCCEEEEEeCCCe----------------EEEEECCCC
Confidence 11 111222 25678888887655 888887654
No 107
>PTZ00421 coronin; Provisional
Probab=88.92 E-value=43 Score=37.31 Aligned_cols=62 Identities=6% Similarity=-0.032 Sum_probs=34.2
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEE
Q 007468 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 135 ~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
+.+++.||.+ ..+.+||+.+.+-...- .........+.+ ++.+++.|+.+ ..+.
T Consensus 138 ~~iLaSgs~D-----------gtVrIWDl~tg~~~~~l----~~h~~~V~sla~spdG~lLatgs~D---------g~Ir 193 (493)
T PTZ00421 138 MNVLASAGAD-----------MVVNVWDVERGKAVEVI----KCHSDQITSLEWNLDGSLLCTTSKD---------KKLN 193 (493)
T ss_pred CCEEEEEeCC-----------CEEEEEECCCCeEEEEE----cCCCCceEEEEEECCCCEEEEecCC---------CEEE
Confidence 3567777653 34778888876432211 100111122222 56777777754 3578
Q ss_pred EEECCCCc
Q 007468 213 VFDLDQFK 220 (602)
Q Consensus 213 ~yd~~t~~ 220 (602)
+||+.+..
T Consensus 194 IwD~rsg~ 201 (493)
T PTZ00421 194 IIDPRDGT 201 (493)
T ss_pred EEECCCCc
Confidence 89988764
No 108
>PRK02889 tolB translocation protein TolB; Provisional
Probab=87.57 E-value=47 Score=36.13 Aligned_cols=147 Identities=11% Similarity=0.032 Sum_probs=74.9
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--C-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCP 177 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~-~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p 177 (602)
..+|++|+.+++=..+... + ... .+..+ + ..|++...... ..++|.+|+.+....++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~--~--g~~-~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF--K--GSN-SAPAWSPDGRTLAVALSRDG---------NSQIYTVNADGSGLRRLTQS--S 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC--C--CCc-cceEECCCCCEEEEEEccCC---------CceEEEEECCCCCcEECCCC--C
Confidence 4699999988876666431 1 111 12222 3 45554433211 25799999988877666431 1
Q ss_pred CCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCC
Q 007468 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKE 257 (602)
Q Consensus 178 ~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~ 257 (602)
.........-+++.++|..... + ...+|.++..+...+.+... + ......+....+..|+......+.
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~-g-----~~~Iy~~~~~~g~~~~lt~~--g---~~~~~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRG-G-----APQIYRMPASGGAAQRVTFT--G---SYNTSPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCC-C-----CcEEEEEECCCCceEEEecC--C---CCcCceEECCCCCEEEEEEccCCc
Confidence 1111112222444333432111 1 24788999888877777543 1 111111222224455544332211
Q ss_pred CCCccCCCCCCceeeeEEEEeCCCCeeEEeec
Q 007468 258 VSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKK 289 (602)
Q Consensus 258 ~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 289 (602)
..++++|+.+.....+..
T Consensus 352 --------------~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 352 --------------FKLYVQDLATGQVTALTD 369 (427)
T ss_pred --------------EEEEEEECCCCCeEEccC
Confidence 258999998887776643
No 109
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=87.40 E-value=0.62 Score=53.20 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHcCC
Q 007468 574 RRKEKRARIEQIRANLGL 591 (602)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~ 591 (602)
+|+.++.+-+.|++-|.-
T Consensus 194 ~r~~~~~~~~~i~~yY~~ 211 (622)
T PF02724_consen 194 RRREREEYREEIEKYYSQ 211 (622)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345555555566666633
No 110
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.26 E-value=46 Score=35.77 Aligned_cols=191 Identities=13% Similarity=0.032 Sum_probs=98.6
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeE-EEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEE--EcccCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQ-AVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWE--QLNLKGC 176 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs-~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~--~~~~~~~ 176 (602)
..++++|+.+++...-. ..+..++ ++.. ++..+++..............-..+|++.+.+..-+ .+-. .
T Consensus 150 ~~l~v~Dl~tg~~l~d~-----i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe--~ 222 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDG-----IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE--E 222 (414)
T ss_dssp EEEEEEETTTTEEEEEE-----EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC---
T ss_pred EEEEEEECCCCcCcCCc-----ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe--e
Confidence 36888999988554321 1233333 3333 334444443333211000112467899988877543 2211 2
Q ss_pred CCCCc-ccEEEE-ECC-EEEEEcCccCCCCCeeeeceEEEEECCCC-----ceEEeccCCCCCCCCCccceeEEEeCCEE
Q 007468 177 PSPRS-GHRMVL-YKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQF-----KWQEIKPRFGSMWPSPRSGFQFFVYQDEV 248 (602)
Q Consensus 177 p~~R~-~h~~~~-~~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~-----~W~~v~~~~~~~~P~~R~~~~~~~~~~~I 248 (602)
+.... ...+.. -++ .|+|.-.... ..+.+|.+++... .|..+.+. ..-..+.+...++.+
T Consensus 223 ~~~~~~~~~~~~s~d~~~l~i~~~~~~------~~s~v~~~d~~~~~~~~~~~~~l~~~------~~~~~~~v~~~~~~~ 290 (414)
T PF02897_consen 223 PDEPFWFVSVSRSKDGRYLFISSSSGT------SESEVYLLDLDDGGSPDAKPKLLSPR------EDGVEYYVDHHGDRL 290 (414)
T ss_dssp TTCTTSEEEEEE-TTSSEEEEEEESSS------SEEEEEEEECCCTTTSS-SEEEEEES------SSS-EEEEEEETTEE
T ss_pred cCCCcEEEEEEecCcccEEEEEEEccc------cCCeEEEEeccccCCCcCCcEEEeCC------CCceEEEEEccCCEE
Confidence 33333 222222 233 4443332211 1378999999875 78888664 222333344458999
Q ss_pred EEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe---eEE-eecCCCCCCC-CceeEEEEECCeEEEeccccccccccc
Q 007468 249 FLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE---WSK-VKKIGMPPGP-RAGFSMCVHKKRALLFGGVVDMEMKGD 323 (602)
Q Consensus 249 yv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~---W~~-l~~~g~~P~~-R~~~s~~~~~~~lyv~GG~~~~~~~~~ 323 (602)
||.-.... ....+..+++.... |.. +.+ +.. ..--.+.+.+++|++.-=.+
T Consensus 291 yi~Tn~~a-------------~~~~l~~~~l~~~~~~~~~~~l~~----~~~~~~l~~~~~~~~~Lvl~~~~~------- 346 (414)
T PF02897_consen 291 YILTNDDA-------------PNGRLVAVDLADPSPAEWWTVLIP----EDEDVSLEDVSLFKDYLVLSYREN------- 346 (414)
T ss_dssp EEEE-TT--------------TT-EEEEEETTSTSGGGEEEEEE------SSSEEEEEEEEETTEEEEEEEET-------
T ss_pred EEeeCCCC-------------CCcEEEEecccccccccceeEEcC----CCCceeEEEEEEECCEEEEEEEEC-------
Confidence 98776332 23457888877654 664 432 223 24445566688888764332
Q ss_pred cccccccCeeEEEECC
Q 007468 324 VIMSLFLNELYGFQLD 339 (602)
Q Consensus 324 ~~~~~~~ndv~~yd~~ 339 (602)
....|.+|++.
T Consensus 347 -----~~~~l~v~~~~ 357 (414)
T PF02897_consen 347 -----GSSRLRVYDLD 357 (414)
T ss_dssp -----TEEEEEEEETT
T ss_pred -----CccEEEEEECC
Confidence 25679999988
No 111
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.22 E-value=46 Score=36.93 Aligned_cols=127 Identities=14% Similarity=0.080 Sum_probs=65.1
Q ss_pred EEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCC-C-CCC-CcccEEEEEC-CEEEEEcCccCCC
Q 007468 129 QAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKG-C-PSP-RSGHRMVLYK-HKIIVFGGFYDTL 202 (602)
Q Consensus 129 s~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~-~-p~~-R~~h~~~~~~-~~Lyv~GG~~~~~ 202 (602)
+-++.++.||+.... ..++.+|..+. .|+.-.... . ..+ -.....++.+ ++||+...
T Consensus 56 sPvv~~g~vy~~~~~------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~----- 118 (488)
T cd00216 56 TPLVVDGDMYFTTSH------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF----- 118 (488)
T ss_pred CCEEECCEEEEeCCC------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-----
Confidence 345668999886542 35788888876 487643211 0 001 0111234446 77776432
Q ss_pred CCeeeeceEEEEECCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC
Q 007468 203 REVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (602)
Q Consensus 203 ~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (602)
...|++||..|.+ |+.-..... .+......+.++.++.+|+ |....... .......+++||..
T Consensus 119 -----~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~~~~v~v-g~~~~~~~-------~~~~~g~v~alD~~ 183 (488)
T cd00216 119 -----DGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIVKKLVII-GSSGAEFF-------ACGVRGALRAYDVE 183 (488)
T ss_pred -----CCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEECCEEEE-eccccccc-------cCCCCcEEEEEECC
Confidence 2578999998754 876433210 0000112233455666664 43222100 00123568999987
Q ss_pred CC--eeEEe
Q 007468 281 TW--EWSKV 287 (602)
Q Consensus 281 t~--~W~~l 287 (602)
+. .|+.-
T Consensus 184 TG~~~W~~~ 192 (488)
T cd00216 184 TGKLLWRFY 192 (488)
T ss_pred CCceeeEee
Confidence 64 58764
No 112
>PTZ00421 coronin; Provisional
Probab=87.00 E-value=56 Score=36.43 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEE-ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ 167 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~-~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~ 167 (602)
..|.+||+.+.+-...-... . ..-.+++. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 148 gtVrIWDl~tg~~~~~l~~h--~-~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~ 201 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCH--S-DQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEECCCCeEEEEEcCC--C-CceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCc
Confidence 35778888776533221111 1 11112222 256677777653 357789988765
No 113
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.34 E-value=21 Score=38.86 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=82.9
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEECC-EEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKH-KIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~-~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
.++|++|+.+++=+.+.. .+ .........-++ +|++.-...+ ..++|.+|+.+..++++...+ .
T Consensus 213 ~~Iyv~dl~tg~~~~lt~--~~-g~~~~~~~SPDG~~la~~~~~~g-------~~~Iy~~dl~~g~~~~LT~~~-----~ 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS--SQ-GMLVVSDVSKDGSKLLLTMAPKG-------QPDIYLYDTNTKTLTQITNYP-----G 277 (419)
T ss_pred CEEEEEECCCCcEEEEec--CC-CcEEeeEECCCCCEEEEEEccCC-------CcEEEEEECCCCcEEEcccCC-----C
Confidence 468999998887666643 11 111111122233 5554433221 368999999999999886652 1
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecc
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGG 314 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG 314 (602)
.-........+.+||+.-...+ ..++|++|+.+...+++...|. .......-+..|+....
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g--------------~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG--------------YPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC--------------CceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEc
Confidence 1111122222556776644322 2469999999988877754322 12222222344443332
Q ss_pred ccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 315 VVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 315 ~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
..... ......+|+++|+.+..+..+..
T Consensus 339 ~~~~~------~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 339 ETNNE------FGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred CCCcc------cCCCCcEEEEEECCCCCeEECCC
Confidence 21100 01123689999999998887765
No 114
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.58 E-value=0.4 Score=54.73 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=4.9
Q ss_pred CCccEEeecC
Q 007468 493 LDEWKCIIPA 502 (602)
Q Consensus 493 ~~~W~~~~~~ 502 (602)
.|..-+|+++
T Consensus 1370 ~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1370 TDSFLGVIEM 1379 (1516)
T ss_pred ccceEEEEec
Confidence 3455555543
No 115
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=85.49 E-value=43 Score=33.71 Aligned_cols=186 Identities=18% Similarity=0.205 Sum_probs=97.5
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcC-----CCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceec
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVE-----KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHY 155 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~-----~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~ 155 (602)
.+++|++.|.. + +.|+.|.-. .+.+...-. +|-+-.+-+.+++++.+|..-. ..
T Consensus 30 ~~~iy~~~~~~--~------~~v~ey~~~~~f~~~~~~~~~~~--Lp~~~~GtG~vVYngslYY~~~-----------~s 88 (250)
T PF02191_consen 30 SEKIYVTSGFS--G------NTVYEYRNYEDFLRNGRSSRTYK--LPYPWQGTGHVVYNGSLYYNKY-----------NS 88 (250)
T ss_pred CCCEEEECccC--C------CEEEEEcCHhHHhhcCCCceEEE--EeceeccCCeEEECCcEEEEec-----------CC
Confidence 57899998852 2 244444322 222221111 3455566667777887776533 25
Q ss_pred CeEEEEECCCCcEE---EcccCCC----CCCCcc---cEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC----ce
Q 007468 156 KDFWMLDLKTNQWE---QLNLKGC----PSPRSG---HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF----KW 221 (602)
Q Consensus 156 ~dv~~yd~~t~~W~---~~~~~~~----p~~R~~---h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~----~W 221 (602)
+.+.+||+.+.+-. .++..+. |-...+ .-.++-.+-|+|+-....... .-.|-.+|+.+. +|
T Consensus 89 ~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g----~ivvskld~~tL~v~~tw 164 (250)
T PF02191_consen 89 RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG----NIVVSKLDPETLSVEQTW 164 (250)
T ss_pred ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC----cEEEEeeCcccCceEEEE
Confidence 78999999998654 3332111 111111 122333455777754433211 123555676654 46
Q ss_pred EEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeE
Q 007468 222 QEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFS 301 (602)
Q Consensus 222 ~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s 301 (602)
..- . +.+..+.+ .++-|.||++-..... ...-.+.||+.+++=..+... .+.+-..++
T Consensus 165 ~T~--~-----~k~~~~na-FmvCGvLY~~~s~~~~------------~~~I~yafDt~t~~~~~~~i~--f~~~~~~~~ 222 (250)
T PF02191_consen 165 NTS--Y-----PKRSAGNA-FMVCGVLYATDSYDTR------------DTEIFYAFDTYTGKEEDVSIP--FPNPYGNIS 222 (250)
T ss_pred Eec--c-----Cchhhcce-eeEeeEEEEEEECCCC------------CcEEEEEEECCCCceeceeee--eccccCceE
Confidence 531 2 34444443 3345788988776543 133367899988765554321 233333455
Q ss_pred EEEE---CCeEEEec
Q 007468 302 MCVH---KKRALLFG 313 (602)
Q Consensus 302 ~~~~---~~~lyv~G 313 (602)
+.-. +.+||++-
T Consensus 223 ~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 223 MLSYNPRDKKLYAWD 237 (250)
T ss_pred eeeECCCCCeEEEEE
Confidence 5554 57788863
No 116
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.48 E-value=32 Score=34.92 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=77.0
Q ss_pred EEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC-Ccc
Q 007468 105 RYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP-RSG 182 (602)
Q Consensus 105 ~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~-R~~ 182 (602)
++||.++.-+..+. |..-.-+.+|+. ++.+|+..= .-+-+-+.|+.+..=+.++. |.+ ..+
T Consensus 172 rLdPa~~~i~vfpa---PqG~gpyGi~atpdGsvwyasl-----------agnaiaridp~~~~aev~p~---P~~~~~g 234 (353)
T COG4257 172 RLDPARNVISVFPA---PQGGGPYGICATPDGSVWYASL-----------AGNAIARIDPFAGHAEVVPQ---PNALKAG 234 (353)
T ss_pred ecCcccCceeeecc---CCCCCCcceEECCCCcEEEEec-----------cccceEEcccccCCcceecC---CCccccc
Confidence 45666665554443 222223334443 667776521 12446677887776555544 333 111
Q ss_pred cEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCC
Q 007468 183 HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (602)
Q Consensus 183 h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~ 260 (602)
..-+.. -+++++--- -...+++||+.+..|...+... ..+|-...-+--.+++++.---
T Consensus 235 sRriwsdpig~~wittw---------g~g~l~rfdPs~~sW~eypLPg----s~arpys~rVD~~grVW~sea~------ 295 (353)
T COG4257 235 SRRIWSDPIGRAWITTW---------GTGSLHRFDPSVTSWIEYPLPG----SKARPYSMRVDRHGRVWLSEAD------ 295 (353)
T ss_pred ccccccCccCcEEEecc---------CCceeeEeCcccccceeeeCCC----CCCCcceeeeccCCcEEeeccc------
Confidence 111211 356666511 1457999999999999876542 2334333333337777764222
Q ss_pred ccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 261 DKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
.+.+.+||+.+.+.+.+.
T Consensus 296 ----------agai~rfdpeta~ftv~p 313 (353)
T COG4257 296 ----------AGAIGRFDPETARFTVLP 313 (353)
T ss_pred ----------cCceeecCcccceEEEec
Confidence 244889999999999884
No 117
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.22 E-value=79 Score=37.44 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=33.0
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcE-EEcccCCCCCCCcccEEEEE---CCEEEEEcCccCCCCCeeeec
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQW-EQLNLKGCPSPRSGHRMVLY---KHKIIVFGGFYDTLREVRYYN 209 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W-~~~~~~~~p~~R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~ 209 (602)
++.+++.||.+ ..+.+||+.+..- ..+.. .....++.+ ++.++++|+.+ .
T Consensus 587 ~~~~L~Sgs~D-----------g~v~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~g~~latgs~d---------g 640 (793)
T PLN00181 587 DPTLLASGSDD-----------GSVKLWSINQGVSIGTIKT------KANICCVQFPSESGRSLAFGSAD---------H 640 (793)
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCcEEEEEec------CCCeEEEEEeCCCCCEEEEEeCC---------C
Confidence 35677777753 3477788876532 12211 111122222 46777777753 4
Q ss_pred eEEEEECCCC
Q 007468 210 DLYVFDLDQF 219 (602)
Q Consensus 210 ~v~~yd~~t~ 219 (602)
.+.+||+.+.
T Consensus 641 ~I~iwD~~~~ 650 (793)
T PLN00181 641 KVYYYDLRNP 650 (793)
T ss_pred eEEEEECCCC
Confidence 6888998654
No 118
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.07 E-value=75 Score=34.54 Aligned_cols=106 Identities=19% Similarity=0.283 Sum_probs=55.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc-EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~-W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
+++|+..|+. ...|-+||..+.. .+.+..-..|..+ -..+..++.++++|+-.. -+-
T Consensus 79 DG~LlaaGD~---------sG~V~vfD~k~r~iLR~~~ah~apv~~--~~f~~~d~t~l~s~sDd~-----------v~k 136 (487)
T KOG0310|consen 79 DGRLLAAGDE---------SGHVKVFDMKSRVILRQLYAHQAPVHV--TKFSPQDNTMLVSGSDDK-----------VVK 136 (487)
T ss_pred CCeEEEccCC---------cCcEEEeccccHHHHHHHhhccCceeE--EEecccCCeEEEecCCCc-----------eEE
Confidence 6889888884 3567888844411 1122222222222 223345789999987422 233
Q ss_pred EEECCCCcEEEcccCCC-CCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 160 MLDLKTNQWEQLNLKGC-PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~-p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
.+|+.+.. .+....+. -.-|++ .+...++.|++-||+++ .|-.||+.+.
T Consensus 137 ~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg---------~vrl~DtR~~ 186 (487)
T KOG0310|consen 137 YWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDG---------KVRLWDTRSL 186 (487)
T ss_pred EEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCc---------eEEEEEeccC
Confidence 34444443 22222111 112222 22334788999999865 4666777766
No 119
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=82.18 E-value=1.2 Score=50.94 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHH
Q 007468 575 RKEKRARIEQIRAN 588 (602)
Q Consensus 575 ~~~~~~~~~~~~~~ 588 (602)
||..|.++++.++.
T Consensus 191 ~~~~r~~~~~~~~~ 204 (622)
T PF02724_consen 191 RRRRRREREEYREE 204 (622)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444445554443
No 120
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=81.76 E-value=34 Score=38.00 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccC
Q 007468 123 PPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYD 200 (602)
Q Consensus 123 ~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~ 200 (602)
.|+.+.-++.. .-.||+.|- -.+||+||+..++|-..-. .-.+--++..+.--+.|+++||..
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------------g~evYRlNLEqGrfL~P~~--~~~~~lN~v~in~~hgLla~Gt~~- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------------GSEVYRLNLEQGRFLNPFE--TDSGELNVVSINEEHGLLACGTED- 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec------------CcceEEEEccccccccccc--cccccceeeeecCccceEEecccC-
Confidence 45555555554 344666553 3679999999999853211 122222322222245799999964
Q ss_pred CCCCeeeeceEEEEECCCCc
Q 007468 201 TLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 201 ~~~~~~~~~~v~~yd~~t~~ 220 (602)
..|+.||+.+..
T Consensus 197 --------g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 --------GVVEFWDPRDKS 208 (703)
T ss_pred --------ceEEEecchhhh
Confidence 468888887643
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=81.48 E-value=76 Score=34.92 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=40.3
Q ss_pred cEEEcccCCCCCCCcccEEEEEC--CEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe
Q 007468 167 QWEQLNLKGCPSPRSGHRMVLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY 244 (602)
Q Consensus 167 ~W~~~~~~~~p~~R~~h~~~~~~--~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~ 244 (602)
+-+.+.+.++...|...+.|.++ +++ |.+|..+ .+|..|+. ..|..-+.+.-.....+-..-+++.+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D--------GSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD--------GSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcch-hhhcccC--------Cceeeeec--CCcccccceEeeeccCCCCceeEEEe
Confidence 34444444455677777888884 466 5566543 34555554 33443332211111223223333333
Q ss_pred --CCEEEEEcCccCC
Q 007468 245 --QDEVFLYGGYSKE 257 (602)
Q Consensus 245 --~~~Iyv~GG~~~~ 257 (602)
++.+++--|.+..
T Consensus 373 S~dg~~LlSRg~D~t 387 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDT 387 (641)
T ss_pred ccccchhhhccCCCc
Confidence 6777776666554
No 122
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=80.07 E-value=36 Score=30.16 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=56.9
Q ss_pred EECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccC-CCCCCCcccEEEEECCEEEEEcCccCCCCCeeeece
Q 007468 132 SWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK-GCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYND 210 (602)
Q Consensus 132 ~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~-~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~ 210 (602)
.++|.||-..-. .. ....-+..||+.+.+|+.+..+ ...........+.++++|-++.-..... ...-+
T Consensus 3 cinGvly~~a~~-~~------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~ 72 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSID 72 (129)
T ss_pred EECcEEEeEEEE-CC------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEE
Confidence 457777766654 11 1246789999999999988763 1234556667778899988875543321 12357
Q ss_pred EEEE-ECCCCceEEeccC
Q 007468 211 LYVF-DLDQFKWQEIKPR 227 (602)
Q Consensus 211 v~~y-d~~t~~W~~v~~~ 227 (602)
+|++ |..+..|++....
T Consensus 73 iWvLeD~~k~~Wsk~~~~ 90 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHIV 90 (129)
T ss_pred EEEeeccccceEEEEEEE
Confidence 8888 5667889987553
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=79.73 E-value=46 Score=35.93 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=68.0
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEE---E--CCEEEEEeCccCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVS---W--KNYLYIFGGEFTS 146 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~---~--~~~iyV~GG~~~~ 146 (602)
++++.. +.-.||+||. ...++|++...++..-.+- +.+++.+. + ++..+|.||.++.
T Consensus 85 ~al~s~---n~G~~l~ag~--------i~g~lYlWelssG~LL~v~-------~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 85 HALASS---NLGYFLLAGT--------ISGNLYLWELSSGILLNVL-------SAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeecC---CCceEEEeec--------ccCcEEEEEeccccHHHHH-------HhhccceeEEEEeCCCcEEEecCCCcc
Confidence 444444 4556777772 3468899887776543221 22222222 2 5677777775432
Q ss_pred CCCCcceecCeEEEEECCCCcEEEcccCCCCCCC---cccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEE
Q 007468 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR---SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (602)
Q Consensus 147 ~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R---~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~ 223 (602)
|.+|.+.+-- ..... ..|.|+ +.|++.+.+ --.=+||.+........-..+-+||+..+. .
T Consensus 147 -----------V~vW~l~~lv-~a~~~-~~~~p~~~f~~HtlsITD-l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--L 210 (476)
T KOG0646|consen 147 -----------VLVWLLTDLV-SADND-HSVKPLHIFSDHTLSITD-LQIGSGGTNARLYTASEDRTIKLWDLSLGV--L 210 (476)
T ss_pred -----------EEEEEEEeec-ccccC-CCccceeeeccCcceeEE-EEecCCCccceEEEecCCceEEEEEeccce--e
Confidence 3333322110 00000 012232 445555543 122244432211001122456777877763 2
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCccCC
Q 007468 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKE 257 (602)
Q Consensus 224 v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~ 257 (602)
+... -.|+.-+++++. .++.+.+|+..+.
T Consensus 211 Llti-----~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 211 LLTI-----TFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred eEEE-----ecCCcceeEEEcccccEEEecCCcce
Confidence 2222 345555566555 5566666776665
No 124
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=79.61 E-value=1.3 Score=43.78 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=12.2
Q ss_pred CCccCcccceeeecC-----eEEEEeceE
Q 007468 450 KPCGRINSCMVVGKD-----TLYVYGGMM 473 (602)
Q Consensus 450 ~P~~R~~~~~~v~~~-----~lyv~GG~~ 473 (602)
+|+|..+|-+.-..+ +-|-||=+.
T Consensus 210 ~PCPKCg~et~eTkdLSmStR~hkyGRQ~ 238 (314)
T PF06524_consen 210 IPCPKCGYETQETKDLSMSTRSHKYGRQG 238 (314)
T ss_pred CCCCCCCCcccccccceeeeecchhcccc
Confidence 466666665533222 345555543
No 125
>PRK10115 protease 2; Provisional
Probab=79.43 E-value=1.3e+02 Score=35.02 Aligned_cols=148 Identities=10% Similarity=0.042 Sum_probs=74.6
Q ss_pred CeEEEEECCCCcE--EEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEEC--CCCceEEeccCCCC
Q 007468 156 KDFWMLDLKTNQW--EQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDL--DQFKWQEIKPRFGS 230 (602)
Q Consensus 156 ~dv~~yd~~t~~W--~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~--~t~~W~~v~~~~~~ 230 (602)
.++|++++.+..- ..+-. .+........... +++..++..... ..+.++.|+. .+..|..+.+.+
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~-- 268 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASA------TTSEVLLLDAELADAEPFVFLPRR-- 268 (686)
T ss_pred CEEEEEECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECC------ccccEEEEECcCCCCCceEEEECC--
Confidence 6899999998832 22221 1222222222222 333333444322 2357888873 334444443331
Q ss_pred CCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC-CCeeEEeecCCCCCCCCceeEEEEECCeE
Q 007468 231 MWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR-TWEWSKVKKIGMPPGPRAGFSMCVHKKRA 309 (602)
Q Consensus 231 ~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~~~g~~P~~R~~~s~~~~~~~l 309 (602)
.... +.....++.+||.--.... ...+..+++. +..|+.+-+.. ..+.--.+.+.++.|
T Consensus 269 --~~~~--~~~~~~~~~ly~~tn~~~~-------------~~~l~~~~~~~~~~~~~l~~~~---~~~~i~~~~~~~~~l 328 (686)
T PRK10115 269 --KDHE--YSLDHYQHRFYLRSNRHGK-------------NFGLYRTRVRDEQQWEELIPPR---ENIMLEGFTLFTDWL 328 (686)
T ss_pred --CCCE--EEEEeCCCEEEEEEcCCCC-------------CceEEEecCCCcccCeEEECCC---CCCEEEEEEEECCEE
Confidence 1122 2333447888887543221 2236666766 57898886521 122333455557777
Q ss_pred EEeccccccccccccccccccCeeEEEECCCCceEE
Q 007468 310 LLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYP 345 (602)
Q Consensus 310 yv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~ 345 (602)
++..=..+ ...++++++.+.....
T Consensus 329 ~~~~~~~g------------~~~l~~~~~~~~~~~~ 352 (686)
T PRK10115 329 VVEERQRG------------LTSLRQINRKTREVIG 352 (686)
T ss_pred EEEEEeCC------------EEEEEEEcCCCCceEE
Confidence 77654332 3457888765544433
No 126
>PRK01742 tolB translocation protein TolB; Provisional
Probab=79.06 E-value=1e+02 Score=33.50 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=33.4
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcC-ccCCCCCeeeeceEEEEECCCCceEEecc
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGG-FYDTLREVRYYNDLYVFDLDQFKWQEIKP 226 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG-~~~~~~~~~~~~~v~~yd~~t~~W~~v~~ 226 (602)
..+|++|+.+..-+.+.. .+. ........-+++.++++. ..+ ..++|.+|+.+.....+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~--~~g-~~~~~~wSPDG~~La~~~~~~g-------~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS--FRG-HNGAPAFSPDGSRLAFASSKDG-------VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEec--CCC-ccCceeECCCCCEEEEEEecCC-------cEEEEEEECCCCCeEeecc
Confidence 468999998887666543 221 111111122444444433 221 1368999998887766654
No 127
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=78.52 E-value=82 Score=32.12 Aligned_cols=185 Identities=15% Similarity=0.102 Sum_probs=100.8
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
-+-++|+++..-+..+-+. -.+-.+.-.+++ .+.|+..|-... +. ++|+.++.-+..+. |..
T Consensus 125 aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~G~---------yG---rLdPa~~~i~vfpa---PqG 188 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQIGA---------YG---RLDPARNVISVFPA---PQG 188 (353)
T ss_pred eeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeecccc---------ce---ecCcccCceeeecc---CCC
Confidence 6778888888777654221 112222233344 356776663211 11 67777776555443 322
Q ss_pred CcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEE---eCCEEEEEcCcc
Q 007468 180 RSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFV---YQDEVFLYGGYS 255 (602)
Q Consensus 180 R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~---~~~~Iyv~GG~~ 255 (602)
-.-.++|+- ++.+|+.-= +-|-+-+.|+.+..=+.++. |.+...-+-.+ -.+++++.--.
T Consensus 189 ~gpyGi~atpdGsvwyasl---------agnaiaridp~~~~aev~p~------P~~~~~gsRriwsdpig~~wittwg- 252 (353)
T COG4257 189 GGPYGICATPDGSVWYASL---------AGNAIARIDPFAGHAEVVPQ------PNALKAGSRRIWSDPIGRAWITTWG- 252 (353)
T ss_pred CCCcceEECCCCcEEEEec---------cccceEEcccccCCcceecC------CCcccccccccccCccCcEEEeccC-
Confidence 222344443 677775411 12456677777764444433 22211111111 15677776222
Q ss_pred CCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeE
Q 007468 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELY 334 (602)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~ 334 (602)
...+++|||.+..|..-+-.+. .+|- .++-+- .+++++.-- -.+.|.
T Consensus 253 ---------------~g~l~rfdPs~~sW~eypLPgs--~arp-ys~rVD~~grVW~sea--------------~agai~ 300 (353)
T COG4257 253 ---------------TGSLHRFDPSVTSWIEYPLPGS--KARP-YSMRVDRHGRVWLSEA--------------DAGAIG 300 (353)
T ss_pred ---------------CceeeEeCcccccceeeeCCCC--CCCc-ceeeeccCCcEEeecc--------------ccCcee
Confidence 2348999999999998754332 2332 233333 456665211 146799
Q ss_pred EEECCCCceEEeEecC
Q 007468 335 GFQLDNHRWYPLELRK 350 (602)
Q Consensus 335 ~yd~~t~~W~~l~~~~ 350 (602)
.||+.+.+.+.++...
T Consensus 301 rfdpeta~ftv~p~pr 316 (353)
T COG4257 301 RFDPETARFTVLPIPR 316 (353)
T ss_pred ecCcccceEEEecCCC
Confidence 9999999999998843
No 128
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=78.51 E-value=1.5 Score=43.20 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=10.7
Q ss_pred CCcccEEEEECCEEEEEcCc
Q 007468 179 PRSGHRMVLYKHKIIVFGGF 198 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~ 198 (602)
|.....++-..+.++-.||.
T Consensus 122 pl~da~C~EC~R~vw~hGGr 141 (314)
T PF06524_consen 122 PLQDAVCIECERGVWDHGGR 141 (314)
T ss_pred cCCCcEeeeeecccccCCCe
Confidence 33344444455666666664
No 129
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=77.53 E-value=51 Score=29.17 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=58.1
Q ss_pred EEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCC
Q 007468 186 VLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQS 265 (602)
Q Consensus 186 ~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~ 265 (602)
+.+||-||-..-... ...+.+.+||+.+.+|+.+..+ ............+.++|+|-++.-....
T Consensus 2 icinGvly~~a~~~~-----~~~~~IvsFDv~~E~f~~i~~P--~~~~~~~~~~~L~~~~G~L~~v~~~~~~-------- 66 (129)
T PF08268_consen 2 ICINGVLYWLAWSED-----SDNNVIVSFDVRSEKFRFIKLP--EDPYSSDCSSTLIEYKGKLALVSYNDQG-------- 66 (129)
T ss_pred EEECcEEEeEEEECC-----CCCcEEEEEEcCCceEEEEEee--eeeccccCccEEEEeCCeEEEEEecCCC--------
Confidence 456888886655411 1357899999999999988763 1113445556677779998887655432
Q ss_pred CCCceeeeEEEEe-CCCCeeEEeec
Q 007468 266 EKGIIHSDLWSLD-PRTWEWSKVKK 289 (602)
Q Consensus 266 ~~~~~~~dv~~yd-~~t~~W~~l~~ 289 (602)
....-++|+++ .....|++...
T Consensus 67 --~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 67 --EPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred --CcceEEEEEeeccccceEEEEEE
Confidence 02345799994 66789998754
No 130
>PRK10115 protease 2; Provisional
Probab=77.36 E-value=1.5e+02 Score=34.55 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=96.5
Q ss_pred CcEEEEEcCCCcE--EEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEEEEEC--CCCcEEEcccCC
Q 007468 101 GDLYRYDVEKQEW--KVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDL--KTNQWEQLNLKG 175 (602)
Q Consensus 101 ~dv~~yd~~~~~W--~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~--~t~~W~~~~~~~ 175 (602)
.+||++++.+..- ..+-.. +.......+... ++...++..... ..+.++.|+. .+..|..+.+
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e--~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~~~~-- 266 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEE--KDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFVFLP-- 266 (686)
T ss_pred CEEEEEECCCChhHCeEEEee--CCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceEEEE--
Confidence 6788888887732 222211 122233233333 333223333222 2356888883 3344433322
Q ss_pred CCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECC-CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCc
Q 007468 176 CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLD-QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (602)
Q Consensus 176 ~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~-t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~ 254 (602)
.+. .........++.+|+.--... ....|..+++. ...|+.+-+. ...+.--.+.+.++.|++..-.
T Consensus 267 ~~~-~~~~~~~~~~~~ly~~tn~~~------~~~~l~~~~~~~~~~~~~l~~~-----~~~~~i~~~~~~~~~l~~~~~~ 334 (686)
T PRK10115 267 RRK-DHEYSLDHYQHRFYLRSNRHG------KNFGLYRTRVRDEQQWEELIPP-----RENIMLEGFTLFTDWLVVEERQ 334 (686)
T ss_pred CCC-CCEEEEEeCCCEEEEEEcCCC------CCceEEEecCCCcccCeEEECC-----CCCCEEEEEEEECCEEEEEEEe
Confidence 111 122233345678888754321 12346777776 5789887654 1122222344457777776544
Q ss_pred cCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEE---E-CCeEE-Eeccccccccccccccccc
Q 007468 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV---H-KKRAL-LFGGVVDMEMKGDVIMSLF 329 (602)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~---~-~~~ly-v~GG~~~~~~~~~~~~~~~ 329 (602)
.+ ...++++++.+.....+.- +.+.....+.. . .+.++ .+.+.. .
T Consensus 335 ~g--------------~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ss~~------------~ 384 (686)
T PRK10115 335 RG--------------LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGYSSMT------------T 384 (686)
T ss_pred CC--------------EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEEecCC------------C
Confidence 33 2447888876655555431 12222211111 1 13333 333332 3
Q ss_pred cCeeEEEECCCCceEEeEe
Q 007468 330 LNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 330 ~ndv~~yd~~t~~W~~l~~ 348 (602)
-.++|.||+.+.+|+.+..
T Consensus 385 P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 385 PDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCEEEEEECCCCcEEEEEe
Confidence 5789999999999888775
No 131
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=76.79 E-value=46 Score=36.35 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=35.4
Q ss_pred eEEEEECCC----CceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 210 DLYVFDLDQ----FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 210 ~v~~yd~~t----~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
.|..||... ..|...... |..+-+++..+..|+|-=|++.. ++.||+....
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsA-------P~~gicfspsne~l~vsVG~Dkk----------------i~~yD~~s~~ 242 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSA-------PCRGICFSPSNEALLVSVGYDKK----------------INIYDIRSQA 242 (673)
T ss_pred eEEEEeccCCCcccchhhhccC-------CcCcceecCCccceEEEecccce----------------EEEeeccccc
Confidence 466667654 235554443 45666677779999999999887 8999987544
No 132
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=76.40 E-value=1.2e+02 Score=33.05 Aligned_cols=140 Identities=17% Similarity=0.169 Sum_probs=76.1
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEE------------EE-CCEEEEEeCccCCCCCCcceecCeEEEEECCCCc
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAV------------SW-KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ 167 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~------------~~-~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~ 167 (602)
.++|.|||.+...+++... +|.-|..-..- ++ ++.|-++. -..++++++..+-
T Consensus 287 GdIylydP~td~lekldI~-lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-------------RGkaFi~~~~~~~ 352 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIG-LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-------------RGKAFIMRPWDGY 352 (668)
T ss_pred CcEEEeCCCcCcceeeecC-CccccccccccccCHHHhhhhhccCCCcEEEEEe-------------cCcEEEECCCCCe
Confidence 5899999999999988754 23443322111 11 22222221 1235566554444
Q ss_pred EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCE
Q 007468 168 WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE 247 (602)
Q Consensus 168 W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~ 247 (602)
--++...+ .-|+.| ......-.|+|-.++ +.+.+||..+..-.++... ..+.....+.-+++
T Consensus 353 ~iqv~~~~--~VrY~r--~~~~~e~~vigt~dg--------D~l~iyd~~~~e~kr~e~~------lg~I~av~vs~dGK 414 (668)
T COG4946 353 SIQVGKKG--GVRYRR--IQVDPEGDVIGTNDG--------DKLGIYDKDGGEVKRIEKD------LGNIEAVKVSPDGK 414 (668)
T ss_pred eEEcCCCC--ceEEEE--EccCCcceEEeccCC--------ceEEEEecCCceEEEeeCC------ccceEEEEEcCCCc
Confidence 34443321 123332 233444677776554 5688999988877666543 34433333333556
Q ss_pred EEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 248 VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 248 Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
..+++-.... +|++|+.+..-+.+.
T Consensus 415 ~~vvaNdr~e----------------l~vididngnv~~id 439 (668)
T COG4946 415 KVVVANDRFE----------------LWVIDIDNGNVRLID 439 (668)
T ss_pred EEEEEcCceE----------------EEEEEecCCCeeEec
Confidence 5555544333 888888877666553
No 133
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=76.15 E-value=1.1e+02 Score=32.54 Aligned_cols=185 Identities=12% Similarity=0.078 Sum_probs=89.1
Q ss_pred CcEEEEEcCCCcE-EEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCC
Q 007468 101 GDLYRYDVEKQEW-KVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGC 176 (602)
Q Consensus 101 ~dv~~yd~~~~~W-~~l~~~~~P~~R~~hs~~~~---~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~ 176 (602)
+.|.+.|..+++- ..++.+. ..|....+ +.++||.+. . ..+-++|+.+.+- +.. .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~Dgr~~yv~~r-d-----------g~vsviD~~~~~~--v~~--i 74 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG-----APHAGLKFSPDGRYLYVANR-D-----------GTVSVIDLATGKV--VAT--I 74 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT-SSEEEEEET-T-----------SEEEEEETTSSSE--EEE--E
T ss_pred CEEEEEECCCCeEEEEEcCCC-----CceeEEEecCCCCEEEEEcC-C-----------CeEEEEECCcccE--EEE--E
Confidence 5788899888753 4554422 22554444 467999863 1 3588999999873 222 2
Q ss_pred CCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceE-EeccCC-CCCCCCCccceeEEEeCCEEEEEcC
Q 007468 177 PSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQ-EIKPRF-GSMWPSPRSGFQFFVYQDEVFLYGG 253 (602)
Q Consensus 177 p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~-~v~~~~-~~~~P~~R~~~~~~~~~~~Iyv~GG 253 (602)
+.+...++.++. +++.++.+.+ ..+.+.++|..+.+=. .++... ....+.+|...-........||+--
T Consensus 75 ~~G~~~~~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 75 KVGGNPRGIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp E-SSEEEEEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred ecCCCcceEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 334444444443 4444444433 2468999998886432 222210 0011334442222223444455433
Q ss_pred ccCCCCCccCCCCCCceeeeEEEEeCCCC--eeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccC
Q 007468 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331 (602)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~n 331 (602)
.. ...+|..|.... .....- +..+..|-..+..+.=|++.+.+. .|
T Consensus 147 kd---------------~~~I~vVdy~d~~~~~~~~i-----~~g~~~~D~~~dpdgry~~va~~~------------sn 194 (369)
T PF02239_consen 147 KD---------------TGEIWVVDYSDPKNLKVTTI-----KVGRFPHDGGFDPDGRYFLVAANG------------SN 194 (369)
T ss_dssp TT---------------TTEEEEEETTTSSCEEEEEE-----E--TTEEEEEE-TTSSEEEEEEGG------------GT
T ss_pred cc---------------CCeEEEEEeccccccceeee-----cccccccccccCcccceeeecccc------------cc
Confidence 22 134788875543 222221 345666666666443333333332 45
Q ss_pred eeEEEECCCCceEEe
Q 007468 332 ELYGFQLDNHRWYPL 346 (602)
Q Consensus 332 dv~~yd~~t~~W~~l 346 (602)
.|-+.|..+++-..+
T Consensus 195 ~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 195 KIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred eeEEEeeccceEEEE
Confidence 788888887755443
No 134
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=75.55 E-value=94 Score=31.28 Aligned_cols=133 Identities=14% Similarity=0.227 Sum_probs=74.1
Q ss_pred eCcEEEEEcCCCcEE---EecCCC----CCCCcee---eEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC---
Q 007468 100 YGDLYRYDVEKQEWK---VISSPN----SPPPRSA---HQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--- 166 (602)
Q Consensus 100 ~~dv~~yd~~~~~W~---~l~~~~----~P~~R~~---hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--- 166 (602)
.+.|.+||+.+..-. .|+... .|-...+ .-.++-.+-|+|+-........ --+-++|+.+.
T Consensus 88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~------ivvskld~~tL~v~ 161 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN------IVVSKLDPETLSVE 161 (250)
T ss_pred CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc------EEEEeeCcccCceE
Confidence 578999999998655 343211 1111111 2233335668877554332211 22446677655
Q ss_pred -cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-
Q 007468 167 -QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY- 244 (602)
Q Consensus 167 -~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~- 244 (602)
+|.. ..+.+..+. +.++=+.||++-...... ..-.+.||+.+++=..+... .+.+-..+++.-+
T Consensus 162 ~tw~T----~~~k~~~~n-aFmvCGvLY~~~s~~~~~-----~~I~yafDt~t~~~~~~~i~----f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 162 QTWNT----SYPKRSAGN-AFMVCGVLYATDSYDTRD-----TEIFYAFDTYTGKEEDVSIP----FPNPYGNISMLSYN 227 (250)
T ss_pred EEEEe----ccCchhhcc-eeeEeeEEEEEEECCCCC-----cEEEEEEECCCCceeceeee----eccccCceEeeeEC
Confidence 4653 134445554 444556899887765431 34568899998866554433 2444445566555
Q ss_pred --CCEEEEEc
Q 007468 245 --QDEVFLYG 252 (602)
Q Consensus 245 --~~~Iyv~G 252 (602)
+.+||++-
T Consensus 228 P~dk~LY~wd 237 (250)
T PF02191_consen 228 PRDKKLYAWD 237 (250)
T ss_pred CCCCeEEEEE
Confidence 67888863
No 135
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=75.42 E-value=0.72 Score=45.33 Aligned_cols=7 Identities=29% Similarity=0.838 Sum_probs=3.3
Q ss_pred CCEEEEE
Q 007468 245 QDEVFLY 251 (602)
Q Consensus 245 ~~~Iyv~ 251 (602)
++.+|+|
T Consensus 57 ~g~~yLy 63 (303)
T KOG3064|consen 57 NGVLYLY 63 (303)
T ss_pred CCEEEEE
Confidence 4444444
No 136
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.77 E-value=1.3e+02 Score=32.53 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=35.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC-CCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN-SPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~-~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++.+|++|-. .-++.=.-...+|..+.... .|-. .+...++ ++.++++|.. ..+
T Consensus 146 ~~~g~~vG~~----------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------------G~v 201 (398)
T PLN00033 146 GKEGWIIGKP----------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------------GAI 201 (398)
T ss_pred CCEEEEEcCc----------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc------------ceE
Confidence 5667777531 12333233356899876432 1222 2333344 4567777742 235
Q ss_pred EEEECCCCcEEEc
Q 007468 159 WMLDLKTNQWEQL 171 (602)
Q Consensus 159 ~~yd~~t~~W~~~ 171 (602)
++-+-.-.+|+.+
T Consensus 202 ~~S~D~G~tW~~~ 214 (398)
T PLN00033 202 YVTSNAGRNWKAA 214 (398)
T ss_pred EEECCCCCCceEc
Confidence 5555456689987
No 137
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.69 E-value=1.3e+02 Score=32.52 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=59.9
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCC--CCCCc-eeeEEEEECCEEEEEeCccCC
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPN--SPPPR-SAHQAVSWKNYLYIFGGEFTS 146 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~--~P~~R-~~hs~~~~~~~iyV~GG~~~~ 146 (602)
.-..+.++|...++.+++|-. .-|..-+=--.+|..+..+. .+..+ ...++...++.+|++|-.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~----------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTR----------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCC----------CEEEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---
Confidence 344555533224678888762 12333333456898764211 11111 234444557778888532
Q ss_pred CCCCcceecCeEEEEECCCCcEEEcccCC-CCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEe
Q 007468 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (602)
Q Consensus 147 ~~~~~~~~~~dv~~yd~~t~~W~~~~~~~-~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v 224 (602)
.-+++=.-.-.+|+.+.... +|.. .+....+ ++.++++|.. ..+++-+-.-..|+.+
T Consensus 156 ---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 156 ---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred ---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceEEEECCCCCCceEc
Confidence 11222222356899886521 1222 2333334 4567777742 2354444445689987
No 138
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=74.58 E-value=78 Score=35.28 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=44.0
Q ss_pred CCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCc
Q 007468 177 PSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (602)
Q Consensus 177 p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~ 254 (602)
-.|+.+.-++.. +--||+.|- -++||+||+..+.|-..-.. -.+-..+.-+.--..|+.+||.
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs----------g~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS----------GSEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred ecCcCCccccccCCCccEEEeec----------CcceEEEEcccccccccccc-----ccccceeeeecCccceEEeccc
Confidence 345555555554 334666543 36899999999988543222 1111111111114578889998
Q ss_pred cCCCCCccCCCCCCceeeeEEEEeCCCC
Q 007468 255 SKEVSTDKNQSEKGIIHSDLWSLDPRTW 282 (602)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 282 (602)
.+. |..+|+.+.
T Consensus 196 ~g~----------------VEfwDpR~k 207 (703)
T KOG2321|consen 196 DGV----------------VEFWDPRDK 207 (703)
T ss_pred Cce----------------EEEecchhh
Confidence 776 788887654
No 139
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.35 E-value=1e+02 Score=30.76 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=78.1
Q ss_pred CCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEEC-CEEEEEeCcc
Q 007468 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK-NYLYIFGGEF 144 (602)
Q Consensus 66 P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~-~~iyV~GG~~ 144 (602)
|.|-.+. +.+.|. .+.|++.||- .-+|+.|..+++.+..-.+. .-+-|+.+.-+ +--++.|+.+
T Consensus 113 evPeINa-m~ldP~-enSi~~AgGD----------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~~qilsG~ED 177 (325)
T KOG0649|consen 113 EVPEINA-MWLDPS-ENSILFAGGD----------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNANGQILSGAED 177 (325)
T ss_pred cCCccce-eEeccC-CCcEEEecCC----------eEEEEEEecCCEEEEEEcCC---cceeeeeeecccCcceeecCCC
Confidence 3344443 334443 5889999983 36799999999988664432 34566666643 3334556654
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEcc-cCCCC-CCC--ccc--EEEEECCEEEEEcCccCCCCCeeeeceEEEEECCC
Q 007468 145 TSPNQERFHHYKDFWMLDLKTNQWEQLN-LKGCP-SPR--SGH--RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQ 218 (602)
Q Consensus 145 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~-~~~~p-~~R--~~h--~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t 218 (602)
+ .+-++|++|.+-.++- +..-| ..| .+- .+...+..-.|.||- ..+-.|++.+
T Consensus 178 G-----------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----------p~lslwhLrs 236 (325)
T KOG0649|consen 178 G-----------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----------PKLSLWHLRS 236 (325)
T ss_pred c-----------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----------CceeEEeccC
Confidence 3 3667888887654432 21111 112 222 455556666666663 2234455555
Q ss_pred CceEEeccCCCCCCCCCccceeEEEeCCEEEEEc
Q 007468 219 FKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYG 252 (602)
Q Consensus 219 ~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~G 252 (602)
..-+.+-+. |-.-|-+..+++.|.+.|
T Consensus 237 se~t~vfpi-------pa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 237 SESTCVFPI-------PARVHLVDFVDDCVLIGG 263 (325)
T ss_pred CCceEEEec-------ccceeEeeeecceEEEec
Confidence 544444333 323344445566666666
No 140
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.94 E-value=1.2e+02 Score=31.28 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=73.5
Q ss_pred CCCcee---eEEEE-ECCEEEEEeCccCCCCC-----------CcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEE
Q 007468 122 PPPRSA---HQAVS-WKNYLYIFGGEFTSPNQ-----------ERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMV 186 (602)
Q Consensus 122 P~~R~~---hs~~~-~~~~iyV~GG~~~~~~~-----------~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~ 186 (602)
|.||++ |.|+. +++.|| |||+-..+.. .....++.+..||+.+.+-+.+=..+..-++...+=+
T Consensus 30 ~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEV 108 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEV 108 (339)
T ss_pred CCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccch
Confidence 455653 44444 466665 7775322211 1112467899999998874433222222233222222
Q ss_pred ---EE---CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCC
Q 007468 187 ---LY---KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (602)
Q Consensus 187 ---~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~ 260 (602)
++ +++||+.-+- +. ..-.||.+|..+..=+.+... |.+. .+.+.+..+| |...-
T Consensus 109 SdIlYdP~~D~LLlAR~D-Gh-----~nLGvy~ldr~~g~~~~L~~~-----ps~K---G~~~~D~a~F---~i~~~--- 168 (339)
T PF09910_consen 109 SDILYDPYEDRLLLARAD-GH-----ANLGVYSLDRRTGKAEKLSSN-----PSLK---GTLVHDYACF---GINNF--- 168 (339)
T ss_pred hheeeCCCcCEEEEEecC-Cc-----ceeeeEEEcccCCceeeccCC-----CCcC---ceEeeeeEEE---ecccc---
Confidence 12 5778876442 11 234689999999988888776 4442 2333333333 22111
Q ss_pred ccCCCCCCceeeeEEEEeCCCCee
Q 007468 261 DKNQSEKGIIHSDLWSLDPRTWEW 284 (602)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~~W 284 (602)
..-...+.|||+.+.+|
T Consensus 169 -------~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 169 -------HKGVSGIHCLDLISGKW 185 (339)
T ss_pred -------ccCCceEEEEEccCCeE
Confidence 12345699999999999
No 141
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=72.35 E-value=1.4e+02 Score=31.75 Aligned_cols=220 Identities=13% Similarity=0.060 Sum_probs=112.1
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEE-EecCCCCCCCce-----eeEEEEE--CCEEEEEeCccCCCCCCcc
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRS-----AHQAVSW--KNYLYIFGGEFTSPNQERF 152 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~-~l~~~~~P~~R~-----~hs~~~~--~~~iyV~GG~~~~~~~~~~ 152 (602)
+..|||.-..+..+....-.+.|.+||+.+.+-. .++.+ |.||. .+..++. +..|||.- ..
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~-------- 125 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQ-FS-------- 125 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEec-CC--------
Confidence 4678888775433333334577899999998765 44442 34452 2222222 45677763 11
Q ss_pred eecCeEEEEECCCCcEEE-cccCCC----CCCCcccEEEEECCE-EE---------------EEcC------ccC--CC-
Q 007468 153 HHYKDFWMLDLKTNQWEQ-LNLKGC----PSPRSGHRMVLYKHK-II---------------VFGG------FYD--TL- 202 (602)
Q Consensus 153 ~~~~dv~~yd~~t~~W~~-~~~~~~----p~~R~~h~~~~~~~~-Ly---------------v~GG------~~~--~~- 202 (602)
.-+.+-++|+.+++-.. ++..+. |.+...+.+.+.++. ++ +|-+ ... ..
T Consensus 126 -p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 126 -PSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred -CCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 23568889998887543 333221 333333333333332 22 2333 111 00
Q ss_pred CC----eeeeceEEEEECCC------CceEEeccCCC--CCCCCCccceeEEEe--CCEEEEEc--CccCCCCCccCCCC
Q 007468 203 RE----VRYYNDLYVFDLDQ------FKWQEIKPRFG--SMWPSPRSGFQFFVY--QDEVFLYG--GYSKEVSTDKNQSE 266 (602)
Q Consensus 203 ~~----~~~~~~v~~yd~~t------~~W~~v~~~~~--~~~P~~R~~~~~~~~--~~~Iyv~G--G~~~~~~~~~~~~~ 266 (602)
.+ ..+-..|+..|+.. ..|..+..... +-.|..... +++. ++++||.. |-.+.
T Consensus 205 dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~t--------- 273 (352)
T TIGR02658 205 SGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAYHRARDRIYLLADQRAKWT--------- 273 (352)
T ss_pred CCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCccee--EEEcCCCCEEEEEecCCcccc---------
Confidence 00 11346777787433 23665543311 111222111 3333 78999842 22111
Q ss_pred CCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE--CC-eEEEeccccccccccccccccccCeeEEEECCCCc
Q 007468 267 KGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH--KK-RALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 267 ~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
.....+.+|++|+.+.+=...- +..+.-+++++- +. .||+.-+. .++|.++|..+.+
T Consensus 274 hk~~~~~V~ViD~~t~kvi~~i-----~vG~~~~~iavS~Dgkp~lyvtn~~--------------s~~VsViD~~t~k 333 (352)
T TIGR02658 274 HKTASRFLFVVDAKTGKRLRKI-----ELGHEIDSINVSQDAKPLLYALSTG--------------DKTLYIFDAETGK 333 (352)
T ss_pred ccCCCCEEEEEECCCCeEEEEE-----eCCCceeeEEECCCCCeEEEEeCCC--------------CCcEEEEECcCCe
Confidence 0123467999998765443332 334455566655 34 56666543 3679999988864
No 142
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.88 E-value=2.1e+02 Score=33.75 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=48.8
Q ss_pred EEEECCEEEEEcCccCC-CCCeeeeceEEEEECCCCc--eEEeccCCCCCCCC-C-----ccce----eEEEe--CCEEE
Q 007468 185 MVLYKHKIIVFGGFYDT-LREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPS-P-----RSGF----QFFVY--QDEVF 249 (602)
Q Consensus 185 ~~~~~~~Lyv~GG~~~~-~~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~P~-~-----R~~~----~~~~~--~~~Iy 249 (602)
-++.++.||+ |+.... .........|..||..|.+ |+.-...+....+. + |.+. .+++. .+.+|
T Consensus 312 P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy 390 (764)
T TIGR03074 312 PLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVY 390 (764)
T ss_pred CEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEE
Confidence 3556777766 543211 0001124568999999865 77653321111111 1 1111 11222 46777
Q ss_pred EEcCccCCC-CCccCCCCCCceeeeEEEEeCCCC--eeEEee
Q 007468 250 LYGGYSKEV-STDKNQSEKGIIHSDLWSLDPRTW--EWSKVK 288 (602)
Q Consensus 250 v~GG~~~~~-~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~ 288 (602)
+--|..... ...........+.+.+..+|+.|. .|..-.
T Consensus 391 ~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 391 LPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred EeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 755532210 000000112356788999998775 587653
No 143
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=71.86 E-value=1.4e+02 Score=31.60 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=101.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~--W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
++++|+... -..++.+|+.+.. |+...... ..........-+++||+-... ..+
T Consensus 68 dg~v~~~~~----------~G~i~A~d~~~g~~~W~~~~~~~--~~~~~~~~~~~~G~i~~g~~~------------g~~ 123 (370)
T COG1520 68 DGTVYVGTR----------DGNIFALNPDTGLVKWSYPLLGA--VAQLSGPILGSDGKIYVGSWD------------GKL 123 (370)
T ss_pred CCeEEEecC----------CCcEEEEeCCCCcEEecccCcCc--ceeccCceEEeCCeEEEeccc------------ceE
Confidence 677777611 1278999999887 97554320 011111122226676654332 258
Q ss_pred EEEECCCC--cEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC--ceEEeccCCCCCCCC
Q 007468 159 WMLDLKTN--QWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPS 234 (602)
Q Consensus 159 ~~yd~~t~--~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~~~P~ 234 (602)
++||..+. .|..-... . ++..-.+++.++.+|+.-. .+.++++|..+. .|..-...+ ++
T Consensus 124 y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s~----------~g~~~al~~~tG~~~W~~~~~~~---~~- 186 (370)
T COG1520 124 YALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGTD----------DGHLYALNADTGTLKWTYETPAP---LS- 186 (370)
T ss_pred EEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEecC----------CCeEEEEEccCCcEEEEEecCCc---cc-
Confidence 88998644 68776542 1 3333344444566665431 357888888764 587544331 01
Q ss_pred CccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeecCCCCCCCCcee--EEEEECCeEE
Q 007468 235 PRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGF--SMCVHKKRAL 310 (602)
Q Consensus 235 ~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~~~--s~~~~~~~ly 310 (602)
.+.....++..+.+|+-.-.. . ..++.+|+.+ ..|+.-... +..+..- ...+..+.||
T Consensus 187 ~~~~~~~~~~~~~vy~~~~~~-~--------------~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~ 248 (370)
T COG1520 187 LSIYGSPAIASGTVYVGSDGY-D--------------GILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVY 248 (370)
T ss_pred cccccCceeecceEEEecCCC-c--------------ceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEE
Confidence 111111224456666542210 1 1488899854 468753221 1111111 1344456666
Q ss_pred EeccccccccccccccccccCeeEEEECCCC--ceEEeE
Q 007468 311 LFGGVVDMEMKGDVIMSLFLNELYGFQLDNH--RWYPLE 347 (602)
Q Consensus 311 v~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~--~W~~l~ 347 (602)
+-||... ......++++|..+. .|..-.
T Consensus 249 v~~~~~~---------~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 249 VDGGVYA---------GSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ECCcEEE---------EecCCeEEEEEcCCCceEEEEec
Confidence 6666321 122344888888765 577544
No 144
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=70.98 E-value=1.4e+02 Score=32.28 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=34.3
Q ss_pred EEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 158 FWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 158 v~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
|.+||+.... .++....+... .-.++.+ .+...+++|. .-.||.|+-.+..|+.+...
T Consensus 413 V~lwDLRKl~--n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~---------~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 413 VKLWDLRKLK--NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGS---------DLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEEEehhhc--ccceeeccccc-cceeEEEcCCCCeEEeecc---------eeEEEEEecccccceeeehh
Confidence 7888887654 22221112221 2333334 3566667663 23577888889999999877
No 145
>PRK01742 tolB translocation protein TolB; Provisional
Probab=70.59 E-value=1.6e+02 Score=31.87 Aligned_cols=158 Identities=9% Similarity=0.008 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCE-EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~-iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..+|.+|+.++.-+.+.... . ...+.+.. ++. |++...... ..++|.+|+.+....++... .
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~--g--~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~--~- 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFR--G--HNGAPAFSPDGSRLAFASSKDG---------VLNIYVMGANGGTPSQLTSG--A- 291 (429)
T ss_pred cEEEEEeCCCCceEEEecCC--C--ccCceeECCCCCEEEEEEecCC---------cEEEEEEECCCCCeEeeccC--C-
Confidence 36899999887766664321 1 11122222 444 444332211 23689999988887766431 1
Q ss_pred CCcccEEEEE--CCE-EEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCcc
Q 007468 179 PRSGHRMVLY--KHK-IIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYS 255 (602)
Q Consensus 179 ~R~~h~~~~~--~~~-Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~ 255 (602)
.......+ +++ |++.....+ ...+|.++..+..-..+.. .. +.......+..|++.++
T Consensus 292 --~~~~~~~wSpDG~~i~f~s~~~g-------~~~I~~~~~~~~~~~~l~~-------~~-~~~~~SpDG~~ia~~~~-- 352 (429)
T PRK01742 292 --GNNTEPSWSPDGQSILFTSDRSG-------SPQVYRMSASGGGASLVGG-------RG-YSAQISADGKTLVMING-- 352 (429)
T ss_pred --CCcCCEEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEEecC-------CC-CCccCCCCCCEEEEEcC--
Confidence 11222233 444 444332221 2467888876654333311 11 11111112445555433
Q ss_pred CCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccc
Q 007468 256 KEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGV 315 (602)
Q Consensus 256 ~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~ 315 (602)
. .++.+|+.+..+..+... . ...+..+. ++++++++..
T Consensus 353 ~----------------~i~~~Dl~~g~~~~lt~~----~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 353 D----------------NVVKQDLTSGSTEVLSST----F--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred C----------------CEEEEECCCCCeEEecCC----C--CCCCceECCCCCEEEEEEc
Confidence 1 267789988888776432 1 11222222 6677777654
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=69.22 E-value=2.1e+02 Score=32.58 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc-EEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYK 156 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~-W~~l~~~~~P~~R~~hs~~~~---~~~iyV~GG~~~~~~~~~~~~~~ 156 (602)
++.++.+|-. ....+|++.+.-+. -..+.. .|..+...+...+ ++.+++.. . ...
T Consensus 393 dg~~Ia~st~--------~~~~iy~L~~~~~vk~~~v~~--~~~~~~~a~~i~ftid~~k~~~~s-~----------~~~ 451 (691)
T KOG2048|consen 393 DGNLIAISTV--------SRTKIYRLQPDPNVKVINVDD--VPLALLDASAISFTIDKNKLFLVS-K----------NIF 451 (691)
T ss_pred CCCEEEEeec--------cceEEEEeccCcceeEEEecc--chhhhccceeeEEEecCceEEEEe-c----------ccc
Confidence 5667777653 22345665555422 223322 4555544444333 67777775 1 124
Q ss_pred eEEEEECCCCcEEEcccCCCCCCC----cccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPR----SGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R----~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
+++.|...+-+...+.... |.+. +.......+++|.++++. ..+++|++.+.+-..+.+.
T Consensus 452 ~le~~el~~ps~kel~~~~-~~~~~~~I~~l~~SsdG~yiaa~~t~----------g~I~v~nl~~~~~~~l~~r 515 (691)
T KOG2048|consen 452 SLEEFELETPSFKELKSIQ-SQAKCPSISRLVVSSDGNYIAAISTR----------GQIFVYNLETLESHLLKVR 515 (691)
T ss_pred eeEEEEecCcchhhhhccc-cccCCCcceeEEEcCCCCEEEEEecc----------ceEEEEEcccceeecchhc
Confidence 6777888777776665421 2222 111222237889998863 5799999999877766654
No 147
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=68.87 E-value=1.6e+02 Score=31.08 Aligned_cols=110 Identities=13% Similarity=0.257 Sum_probs=60.9
Q ss_pred ceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCC
Q 007468 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 71 ~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~ 150 (602)
-+++...| ++.+.+.||. . +-.|.++..++.|--.-++. .--....+..+++.++..|+..+
T Consensus 67 vFavsl~P--~~~l~aTGGg----D-----D~AflW~~~~ge~~~eltgH--KDSVt~~~FshdgtlLATGdmsG----- 128 (399)
T KOG0296|consen 67 VFAVSLHP--NNNLVATGGG----D-----DLAFLWDISTGEFAGELTGH--KDSVTCCSFSHDGTLLATGDMSG----- 128 (399)
T ss_pred eEEEEeCC--CCceEEecCC----C-----ceEEEEEccCCcceeEecCC--CCceEEEEEccCceEEEecCCCc-----
Confidence 34555566 6889999993 2 35578888888876443322 11122223334778888888743
Q ss_pred cceecCeEEEEECCC--CcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 151 RFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t--~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
.+.+|...+ .+|..... + ....-..+ ...|+++|-.+ ..+|.|.+.+.
T Consensus 129 ------~v~v~~~stg~~~~~~~~e--~----~dieWl~WHp~a~illAG~~D---------GsvWmw~ip~~ 180 (399)
T KOG0296|consen 129 ------KVLVFKVSTGGEQWKLDQE--V----EDIEWLKWHPRAHILLAGSTD---------GSVWMWQIPSQ 180 (399)
T ss_pred ------cEEEEEcccCceEEEeecc--c----CceEEEEecccccEEEeecCC---------CcEEEEECCCc
Confidence 344554444 45665422 0 01111111 23466666543 46899988876
No 148
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=67.66 E-value=3.1 Score=49.20 Aligned_cols=8 Identities=25% Similarity=0.547 Sum_probs=4.3
Q ss_pred ECCCCcEE
Q 007468 162 DLKTNQWE 169 (602)
Q Consensus 162 d~~t~~W~ 169 (602)
|.-+.+|+
T Consensus 1241 DtCSFTWT 1248 (3015)
T KOG0943|consen 1241 DTCSFTWT 1248 (3015)
T ss_pred Cccceeec
Confidence 34455664
No 149
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=67.26 E-value=1.5e+02 Score=30.01 Aligned_cols=168 Identities=8% Similarity=0.048 Sum_probs=73.8
Q ss_pred cceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEE---cCCCcEEEecCCCCCC-------CceeeEEEEECCEEEE
Q 007468 70 SNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYD---VEKQEWKVISSPNSPP-------PRSAHQAVSWKNYLYI 139 (602)
Q Consensus 70 ~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd---~~~~~W~~l~~~~~P~-------~R~~hs~~~~~~~iyV 139 (602)
.+.++-++ +++||.+=-...-..+. +.....|+ ...+.|+...-+..|. .-.-|+.+.+++.-|.
T Consensus 76 HCmSMGv~---~NRLfa~iEtR~~a~~k--m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA 150 (367)
T PF12217_consen 76 HCMSMGVV---GNRLFAVIETRTVASNK--MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFA 150 (367)
T ss_dssp E-B-EEEE---TTEEEEEEEEEETTT----EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EE
T ss_pred eeeeeeee---cceeeEEEeehhhhhhh--hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCcee
Confidence 34555666 78888654332222221 22223333 4578898544333333 4567899999887778
Q ss_pred EeCccCCCCCCcceecCeEEEEECCC----Cc-EEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEE
Q 007468 140 FGGEFTSPNQERFHHYKDFWMLDLKT----NQ-WEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVF 214 (602)
Q Consensus 140 ~GG~~~~~~~~~~~~~~dv~~yd~~t----~~-W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~y 214 (602)
+|=.++.-.. ..+ .+..|...- .. =..++.. ....-+-.+.-.+++.||+.---... ...-+.+.+-
T Consensus 151 ~GyHnGD~sP---Re~-G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~---~~~GS~L~rs 222 (367)
T PF12217_consen 151 VGYHNGDVSP---REL-GFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLP---TNPGSSLHRS 222 (367)
T ss_dssp EEEEE-SSSS----EE-EEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-T---TS---EEEEE
T ss_pred EEeccCCCCc---cee-eEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCC---CCCcceeeee
Confidence 8743332211 111 122221111 11 1222221 11122333445569999998532221 1234567777
Q ss_pred ECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCc
Q 007468 215 DLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGY 254 (602)
Q Consensus 215 d~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~ 254 (602)
+..-..|..+.... ....+..-.+..++.|||||--
T Consensus 223 ~d~G~~w~slrfp~----nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 223 DDNGQNWSSLRFPN----NVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp SSTTSS-EEEE-TT-------SS---EEEETTEEEEEEE-
T ss_pred cccCCchhhccccc----cccccCCCceeeCCEEEEEecc
Confidence 77777899887641 2223333456669999999954
No 150
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=67.17 E-value=4.8 Score=46.51 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHhhhc
Q 007468 38 DDIDAILLSIQKEEAK 53 (602)
Q Consensus 38 edi~~~l~~~~~~e~~ 53 (602)
-++++++.+|...+..
T Consensus 1013 ~sLdSIVt~Ylr~QH~ 1028 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHR 1028 (1516)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3455555555554443
No 151
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=66.85 E-value=3.4 Score=44.71 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=5.7
Q ss_pred CCCChhHHH
Q 007468 557 LQMGDAVAI 565 (602)
Q Consensus 557 ~~~~~~~~~ 565 (602)
-++.+||..
T Consensus 113 s~~ddaVnd 121 (694)
T KOG4264|consen 113 SNLDDAVND 121 (694)
T ss_pred hhhhhhhcc
Confidence 477777653
No 152
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=66.52 E-value=3.7 Score=48.60 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.7
Q ss_pred hhhhccCC
Q 007468 506 EWVEASEG 513 (602)
Q Consensus 506 ~w~~~~~~ 513 (602)
|.-++++.
T Consensus 1729 ef~GEed~ 1736 (3015)
T KOG0943|consen 1729 EFAGEEDH 1736 (3015)
T ss_pred cccCcccc
Confidence 45555443
No 153
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=65.66 E-value=2.6e+02 Score=32.40 Aligned_cols=161 Identities=12% Similarity=0.150 Sum_probs=84.5
Q ss_pred ceeeEEEEEC--CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCC
Q 007468 125 RSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTL 202 (602)
Q Consensus 125 R~~hs~~~~~--~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~ 202 (602)
+..-..++++ +.-+.||+.. +..+.+|+-.+.+.-.-.. ....|....+..-++.+++.|+-+
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~k----------lgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eD--- 371 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSK----------LGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAED--- 371 (893)
T ss_pred cceeeEEEecccCCEEEEcCCc----------cceEEEEEeeccceeeecc--ccccceeeEEECCCCcEEEeccCC---
Confidence 4444555554 5555666542 3456677666665432222 234444333333378899998865
Q ss_pred CCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCC
Q 007468 203 REVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPR 280 (602)
Q Consensus 203 ~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~ 280 (602)
..|-+||..+... .+.. -.+-++++++.+ .++.++.--.++. |-.+|+.
T Consensus 372 ------gKVKvWn~~SgfC-~vTF------teHts~Vt~v~f~~~g~~llssSLDGt----------------VRAwDlk 422 (893)
T KOG0291|consen 372 ------GKVKVWNTQSGFC-FVTF------TEHTSGVTAVQFTARGNVLLSSSLDGT----------------VRAWDLK 422 (893)
T ss_pred ------CcEEEEeccCceE-EEEe------ccCCCceEEEEEEecCCEEEEeecCCe----------------EEeeeec
Confidence 3577777766432 2222 234455555444 5555555555444 3334432
Q ss_pred CC-eeEEeecCCCCCCCCceeEEEEEC--CeEEEeccccccccccccccccccCeeEEEECCCCceEEeE
Q 007468 281 TW-EWSKVKKIGMPPGPRAGFSMCVHK--KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLE 347 (602)
Q Consensus 281 t~-~W~~l~~~g~~P~~R~~~s~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~ 347 (602)
.. ...... .|.| ..++++.++ |-|++.|+.+. -+|++++..|++-..+-
T Consensus 423 RYrNfRTft----~P~p-~QfscvavD~sGelV~AG~~d~-------------F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 423 RYRNFRTFT----SPEP-IQFSCVAVDPSGELVCAGAQDS-------------FEIFVWSVQTGQLLDIL 474 (893)
T ss_pred ccceeeeec----CCCc-eeeeEEEEcCCCCEEEeeccce-------------EEEEEEEeecCeeeehh
Confidence 21 122221 2444 455666664 88888888653 35777777766554433
No 154
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=65.22 E-value=1.5e+02 Score=31.16 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=43.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEE--EecCCCCCC-Ccee-------eEEEEECCEEEEEeCccCCCCCC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK--VISSPNSPP-PRSA-------HQAVSWKNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~--~l~~~~~P~-~R~~-------hs~~~~~~~iyV~GG~~~~~~~~ 150 (602)
+..+|+..=.+..+.......-|..||+.+.+-. .. +|. +|.. .+...-+..+||+-
T Consensus 47 gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----iP~k~R~~~~~~~~~~~ls~dgk~~~V~N--------- 113 (342)
T PF06433_consen 47 GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----IPPKPRAQVVPYKNMFALSADGKFLYVQN--------- 113 (342)
T ss_dssp SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE----ETTS-B--BS--GGGEEE-TTSSEEEEEE---------
T ss_pred CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe----cCCcchheecccccceEEccCCcEEEEEc---------
Confidence 4667777665544544456677889999998543 22 222 2442 12222245677763
Q ss_pred cceecCeEEEEECCCCcEE
Q 007468 151 RFHHYKDFWMLDLKTNQWE 169 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~ 169 (602)
+.+...|-+.|+...+.-
T Consensus 114 -~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 114 -FTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp -ESSSEEEEEEETTTTEEE
T ss_pred -cCCCCeEEEEECCCCcee
Confidence 234567889999988763
No 155
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=65.03 E-value=1.3e+02 Score=35.55 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=24.1
Q ss_pred EEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEeccC
Q 007468 184 RMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPR 227 (602)
Q Consensus 184 ~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~~ 227 (602)
+-+++++.||+... .+.|+.+|..|.+ |+.-...
T Consensus 189 TPlvvgg~lYv~t~----------~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 189 TPLKVGDTLYLCTP----------HNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred CCEEECCEEEEECC----------CCeEEEEECCCCcEEEEEcCCC
Confidence 34667999999754 3578999988754 8765443
No 156
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=64.07 E-value=1.9e+02 Score=30.08 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=80.4
Q ss_pred CCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCC-CceeeEEEEECCEEEEEeCcc
Q 007468 66 PSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPP-PRSAHQAVSWKNYLYIFGGEF 144 (602)
Q Consensus 66 P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~-~R~~hs~~~~~~~iyV~GG~~ 144 (602)
|....-..+.++. .++-|++|-. ..++.=.=--.+|..+....... ....+++...++..||+|-.
T Consensus 14 ~t~~~l~dV~F~d--~~~G~~VG~~----------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~- 80 (302)
T PF14870_consen 14 PTDKPLLDVAFVD--PNHGWAVGAY----------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP- 80 (302)
T ss_dssp S-SS-EEEEEESS--SS-EEEEETT----------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-
T ss_pred CCCCceEEEEEec--CCEEEEEecC----------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-
Confidence 3333445555553 5778888752 23333222345899876432111 12333444457889988742
Q ss_pred CCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEE
Q 007468 145 TSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (602)
Q Consensus 145 ~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~ 223 (602)
.-+++-.=.-.+|++++.. .+.|...+....+ .+.++++|.. ..||+=.=.-..|+.
T Consensus 81 -----------g~ll~T~DgG~tW~~v~l~-~~lpgs~~~i~~l~~~~~~l~~~~----------G~iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 81 -----------GLLLHTTDGGKTWERVPLS-SKLPGSPFGITALGDGSAELAGDR----------GAIYRTTDGGKTWQA 138 (302)
T ss_dssp -----------TEEEEESSTTSS-EE-----TT-SS-EEEEEEEETTEEEEEETT------------EEEESSTTSSEEE
T ss_pred -----------ceEEEecCCCCCcEEeecC-CCCCCCeeEEEEcCCCcEEEEcCC----------CcEEEeCCCCCCeeE
Confidence 1233333345689998642 1334444444444 5677776542 234443334568998
Q ss_pred eccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEE
Q 007468 224 IKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSM 302 (602)
Q Consensus 224 v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~ 302 (602)
+... .. -.-..+... ++.+++++-. +. + +...++....|+.... +..|.--+|
T Consensus 139 ~~~~-----~~-gs~~~~~r~~dG~~vavs~~-G~------------~---~~s~~~G~~~w~~~~r----~~~~riq~~ 192 (302)
T PF14870_consen 139 VVSE-----TS-GSINDITRSSDGRYVAVSSR-GN------------F---YSSWDPGQTTWQPHNR----NSSRRIQSM 192 (302)
T ss_dssp EE-S----------EEEEEE-TTS-EEEEETT-SS------------E---EEEE-TT-SS-EEEE------SSS-EEEE
T ss_pred cccC-----Cc-ceeEeEEECCCCcEEEEECc-cc------------E---EEEecCCCccceEEcc----Cccceehhc
Confidence 8664 12 222223333 6665555543 33 1 2356788888998865 356666666
Q ss_pred EEE-CCeEEEe
Q 007468 303 CVH-KKRALLF 312 (602)
Q Consensus 303 ~~~-~~~lyv~ 312 (602)
.+. ++.|+++
T Consensus 193 gf~~~~~lw~~ 203 (302)
T PF14870_consen 193 GFSPDGNLWML 203 (302)
T ss_dssp EE-TTS-EEEE
T ss_pred eecCCCCEEEE
Confidence 666 4555554
No 157
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=63.75 E-value=2.1e+02 Score=30.62 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=56.8
Q ss_pred CCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccC--CCC-CCC--cccE
Q 007468 110 KQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLK--GCP-SPR--SGHR 184 (602)
Q Consensus 110 ~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~--~~p-~~R--~~h~ 184 (602)
.+.|+.+.. ..-..-.++.+++++|++.- ...++.++..- .-.++.+. ..+ ..+ ....
T Consensus 189 ~~~Wt~l~~----~~~~~~DIi~~kGkfYAvD~------------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~y 251 (373)
T PLN03215 189 GNVLKALKQ----MGYHFSDIIVHKGQTYALDS------------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRR 251 (373)
T ss_pred CCeeeEccC----CCceeeEEEEECCEEEEEcC------------CCeEEEEecCC-ceeeecceecccccCCcccCcee
Confidence 489998853 23345667888999999831 23456665321 11222210 001 011 1233
Q ss_pred EEEECCEEEEEcCccCCCCC----------eeeeceEEEEECCCCceEEeccCC
Q 007468 185 MVLYKHKIIVFGGFYDTLRE----------VRYYNDLYVFDLDQFKWQEIKPRF 228 (602)
Q Consensus 185 ~~~~~~~Lyv~GG~~~~~~~----------~~~~~~v~~yd~~t~~W~~v~~~~ 228 (602)
.|...+.||++..+...... ....-.|+.+|....+|..+....
T Consensus 252 LVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 252 FVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 55667889998875321100 112235677788889999998873
No 158
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=63.09 E-value=2.1e+02 Score=30.29 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~ 213 (602)
++.+.+.||.+. -.+++++.+..|--..+ ...--.-.++..+++.+++-|+..+ .|.+
T Consensus 75 ~~~l~aTGGgDD-----------~AflW~~~~ge~~~elt--gHKDSVt~~~FshdgtlLATGdmsG---------~v~v 132 (399)
T KOG0296|consen 75 NNNLVATGGGDD-----------LAFLWDISTGEFAGELT--GHKDSVTCCSFSHDGTLLATGDMSG---------KVLV 132 (399)
T ss_pred CCceEEecCCCc-----------eEEEEEccCCcceeEec--CCCCceEEEEEccCceEEEecCCCc---------cEEE
Confidence 567888888643 35677888887643322 1111122233445888999999754 4555
Q ss_pred EECCC--CceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC
Q 007468 214 FDLDQ--FKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (602)
Q Consensus 214 yd~~t--~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (602)
|...+ .+|....... .+-- +..+ ...|+++|-.++. +|+|.+....-.++-+
T Consensus 133 ~~~stg~~~~~~~~e~~--dieW------l~WHp~a~illAG~~DGs----------------vWmw~ip~~~~~kv~~- 187 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVE--DIEW------LKWHPRAHILLAGSTDGS----------------VWMWQIPSQALCKVMS- 187 (399)
T ss_pred EEcccCceEEEeecccC--ceEE------EEecccccEEEeecCCCc----------------EEEEECCCcceeeEec-
Confidence 65554 4576653331 0000 0111 4567777777766 9999887764444432
Q ss_pred CCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 291 GMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 291 g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
| +..++..+...-.++.++.|=. + ..|-++|+.+.
T Consensus 188 G--h~~~ct~G~f~pdGKr~~tgy~-d-------------gti~~Wn~ktg 222 (399)
T KOG0296|consen 188 G--HNSPCTCGEFIPDGKRILTGYD-D-------------GTIIVWNPKTG 222 (399)
T ss_pred C--CCCCcccccccCCCceEEEEec-C-------------ceEEEEecCCC
Confidence 1 2333333444445555554432 1 34777888776
No 159
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=62.89 E-value=1.7e+02 Score=29.21 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=73.4
Q ss_pred cEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCc
Q 007468 102 DLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRS 181 (602)
Q Consensus 102 dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~ 181 (602)
.+-.+||.....-+--++.. .-.--++...++.-|..||-. ..+++||..|++--+. -.
T Consensus 40 tvrLWNp~rg~liktYsghG--~EVlD~~~s~Dnskf~s~GgD-----------k~v~vwDV~TGkv~Rr--------~r 98 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYSGHG--HEVLDAALSSDNSKFASCGGD-----------KAVQVWDVNTGKVDRR--------FR 98 (307)
T ss_pred eEEeecccccceeeeecCCC--ceeeeccccccccccccCCCC-----------ceEEEEEcccCeeeee--------cc
Confidence 45667777665543322210 011112233355545555432 4588999988863221 11
Q ss_pred ccEE----EEEC--CEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCcc
Q 007468 182 GHRM----VLYK--HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYS 255 (602)
Q Consensus 182 ~h~~----~~~~--~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~ 255 (602)
+|.+ +.+| ..+++-|+++ ..+.+||..+...+.++.. ...+-+-..+.+.+..+|.|-.+
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD---------~s~r~wDCRS~s~ePiQil-----dea~D~V~Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFD---------SSVRLWDCRSRSFEPIQIL-----DEAKDGVSSIDVAEHEIVAGSVD 164 (307)
T ss_pred cccceeeEEEecCcceEEEecccc---------ceeEEEEcccCCCCccchh-----hhhcCceeEEEecccEEEeeccC
Confidence 2322 3343 3577777764 5788999999988888777 67788877888888888888877
Q ss_pred CC
Q 007468 256 KE 257 (602)
Q Consensus 256 ~~ 257 (602)
+.
T Consensus 165 Gt 166 (307)
T KOG0316|consen 165 GT 166 (307)
T ss_pred Cc
Confidence 76
No 160
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=61.55 E-value=4.9 Score=45.72 Aligned_cols=10 Identities=40% Similarity=0.694 Sum_probs=5.1
Q ss_pred CCEEEEEcCc
Q 007468 245 QDEVFLYGGY 254 (602)
Q Consensus 245 ~~~Iyv~GG~ 254 (602)
.|.-.++||-
T Consensus 729 ~G~~i~y~g~ 738 (988)
T KOG2038|consen 729 EGEEIQYGGP 738 (988)
T ss_pred cCceeecCCC
Confidence 4444555553
No 161
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=61.14 E-value=8.6 Score=30.37 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCC
Q 007468 574 RRKEKRARIEQIRANLGLSDSQRTPME 600 (602)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (602)
-...|++.|.+|+++||+....|.|+.
T Consensus 39 ~i~~L~~yI~~L~~~Lg~~~rrR~p~~ 65 (68)
T PF02831_consen 39 NIGDLRAYIQQLEAQLGIVGRRRRPAG 65 (68)
T ss_dssp GHHHHHHHHHHHHHHTTST-SS-----
T ss_pred CHHHHHHHHHHHHHHhCcCCCCCCCCc
Confidence 478899999999999999998998863
No 162
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=60.23 E-value=4.1e+02 Score=32.78 Aligned_cols=208 Identities=11% Similarity=0.062 Sum_probs=107.0
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCC--------CCC--ceeeEEEEE--CCEEEEEeCccCCCC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNS--------PPP--RSAHQAVSW--KNYLYIFGGEFTSPN 148 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~--------P~~--R~~hs~~~~--~~~iyV~GG~~~~~~ 148 (602)
++.|||.-= ..+.|++||+....-..+..... ... ..-+.+++. ++.|||.-..
T Consensus 579 ~g~lyVaDs---------~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~----- 644 (1057)
T PLN02919 579 NNRLFISDS---------NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE----- 644 (1057)
T ss_pred CCeEEEEEC---------CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-----
Confidence 467777642 13578889987554333332100 001 122445444 4678887543
Q ss_pred CCcceecCeEEEEECCCCcEEEcccCCCCC-------------CCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEE
Q 007468 149 QERFHHYKDFWMLDLKTNQWEQLNLKGCPS-------------PRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYV 213 (602)
Q Consensus 149 ~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~-------------~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~ 213 (602)
.+.+.++|+.++.-+.+...+... -..-+.+++. ++.|||.... .+.|++
T Consensus 645 ------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~---------~~~I~v 709 (1057)
T PLN02919 645 ------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG---------QHQIWE 709 (1057)
T ss_pred ------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC---------CCeEEE
Confidence 245778888887665554322100 0111233333 5788886432 367899
Q ss_pred EECCCCceEEeccCC-----CCCCCC---CccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 214 FDLDQFKWQEIKPRF-----GSMWPS---PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 214 yd~~t~~W~~v~~~~-----~~~~P~---~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
||+.+.....+.... .+..+. ...-+++++. ++.|||.-..+. .|.+||+.+..
T Consensus 710 ~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~----------------~Irv~D~~tg~ 773 (1057)
T PLN02919 710 YNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS----------------SIRALDLKTGG 773 (1057)
T ss_pred EECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC----------------eEEEEECCCCc
Confidence 998877655443210 000000 0111223333 456998866543 38889987765
Q ss_pred eEEeecCCCC--CC--------------CCc--eeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceE
Q 007468 284 WSKVKKIGMP--PG--------------PRA--GFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWY 344 (602)
Q Consensus 284 W~~l~~~g~~--P~--------------~R~--~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~ 344 (602)
.+.+.. |.+ +. .+. -.++++. ++.|||.-.. .+.|.+||+.++...
T Consensus 774 ~~~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--------------N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 774 SRLLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--------------NHKIKKLDPATKRVT 838 (1057)
T ss_pred EEEEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--------------CCEEEEEECCCCeEE
Confidence 433221 000 00 011 1233333 5678887543 356999999998877
Q ss_pred EeEe
Q 007468 345 PLEL 348 (602)
Q Consensus 345 ~l~~ 348 (602)
.+..
T Consensus 839 tiaG 842 (1057)
T PLN02919 839 TLAG 842 (1057)
T ss_pred EEec
Confidence 7665
No 163
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.17 E-value=3.3e+02 Score=31.67 Aligned_cols=126 Identities=14% Similarity=0.164 Sum_probs=62.7
Q ss_pred eCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCC
Q 007468 100 YGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSP 179 (602)
Q Consensus 100 ~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~ 179 (602)
+..+.+|+.++.++.....+. .+|....+..-++++.+.|+.+. .|-+||..+.-.. +. ....
T Consensus 329 lgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDg-----------KVKvWn~~SgfC~-vT---FteH 391 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDG-----------KVKVWNTQSGFCF-VT---FTEH 391 (893)
T ss_pred cceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCC-----------cEEEEeccCceEE-EE---eccC
Confidence 345555655555444322222 33333222223678888888653 3667777654322 11 1234
Q ss_pred CcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccC
Q 007468 180 RSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (602)
Q Consensus 180 R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~ 256 (602)
-++++++.+ .++.++---.+ ..|-.||+...+=-+--.. |.|+...++++- .+.|++.|+.+.
T Consensus 392 ts~Vt~v~f~~~g~~llssSLD---------GtVRAwDlkRYrNfRTft~-----P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLD---------GTVRAWDLKRYRNFRTFTS-----PEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred CCceEEEEEEecCCEEEEeecC---------CeEEeeeecccceeeeecC-----CCceeeeEEEEcCCCCEEEeeccce
Confidence 556666554 44444433322 3566677665432222222 555544444433 588888887653
No 164
>smart00284 OLF Olfactomedin-like domains.
Probab=59.42 E-value=2e+02 Score=29.01 Aligned_cols=153 Identities=11% Similarity=0.105 Sum_probs=79.6
Q ss_pred CCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCC---------cc---cEEEEE
Q 007468 121 SPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPR---------SG---HRMVLY 188 (602)
Q Consensus 121 ~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R---------~~---h~~~~~ 188 (602)
+|.+-.+-+.+++++.+|..-.. ...+.+||+.+.+-..... +|.+. .+ .-.++-
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~~-----------s~~iiKydL~t~~v~~~~~--Lp~a~y~~~~~Y~~~~~sdiDlAvD 136 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKFN-----------SHDICRFDLTTETYQKEPL--LNGAGYNNRFPYAWGGFSDIDLAVD 136 (255)
T ss_pred CCCccccccEEEECceEEEEecC-----------CccEEEEECCCCcEEEEEe--cCccccccccccccCCCccEEEEEc
Confidence 45667788888999999875432 3679999999997643322 22211 11 122333
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCC----ceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQF----KWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQ 264 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~----~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~ 264 (602)
.+-|+||=....... .-.|-.+|+.+. +|..- . |.+..+ .+.++=|.||+.-.....
T Consensus 137 E~GLWvIYat~~~~g----~ivvSkLnp~tL~ve~tW~T~--~-----~k~sa~-naFmvCGvLY~~~s~~~~------- 197 (255)
T smart00284 137 ENGLWVIYATEQNAG----KIVISKLNPATLTIENTWITT--Y-----NKRSAS-NAFMICGILYVTRSLGSK------- 197 (255)
T ss_pred CCceEEEEeccCCCC----CEEEEeeCcccceEEEEEEcC--C-----Cccccc-ccEEEeeEEEEEccCCCC-------
Confidence 445666532211110 123456677664 35541 1 333333 333445788888532211
Q ss_pred CCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE---CCeEEEe
Q 007468 265 SEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH---KKRALLF 312 (602)
Q Consensus 265 ~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~---~~~lyv~ 312 (602)
...-.+.||+.+.+=..+.. ..+.+...+++.-. +.+||+.
T Consensus 198 -----~~~I~yayDt~t~~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 198 -----GEKVFYAYDTNTGKEGHLDI--PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred -----CcEEEEEEECCCCccceeee--eeccccccceeceeCCCCCeEEEE
Confidence 12336789988765333321 12333334444444 5678875
No 165
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=59.41 E-value=2.7e+02 Score=30.50 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=37.4
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYV 213 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~ 213 (602)
.+.+++.|+.+ ..|.++|+.+.+-...-. .........+..-++.+++.+.++ ..+.+
T Consensus 257 ~g~~i~Sgs~D-----------~tvriWd~~~~~~~~~l~--~hs~~is~~~f~~d~~~l~s~s~d---------~~i~v 314 (456)
T KOG0266|consen 257 DGNLLVSGSDD-----------GTVRIWDVRTGECVRKLK--GHSDGISGLAFSPDGNLLVSASYD---------GTIRV 314 (456)
T ss_pred CCCEEEEecCC-----------CcEEEEeccCCeEEEeee--ccCCceEEEEECCCCCEEEEcCCC---------ccEEE
Confidence 35788888764 357888888854333211 122222212222256677776542 46888
Q ss_pred EECCCCce
Q 007468 214 FDLDQFKW 221 (602)
Q Consensus 214 yd~~t~~W 221 (602)
||+.+..-
T Consensus 315 wd~~~~~~ 322 (456)
T KOG0266|consen 315 WDLETGSK 322 (456)
T ss_pred EECCCCce
Confidence 89887653
No 166
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=57.56 E-value=2e+02 Score=28.34 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=28.9
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~ 257 (602)
++.|.+-+|-.. -.+|.-|..+.+ -+.. ..+..||-.+.+ ++.+|+.|..+..
T Consensus 151 ~~~il~s~gagd--------c~iy~tdc~~g~--~~~a------~sghtghilalyswn~~m~~sgsqdkt 205 (350)
T KOG0641|consen 151 GGAILASAGAGD--------CKIYITDCGRGQ--GFHA------LSGHTGHILALYSWNGAMFASGSQDKT 205 (350)
T ss_pred CceEEEecCCCc--------ceEEEeecCCCC--ccee------ecCCcccEEEEEEecCcEEEccCCCce
Confidence 457888887532 245555554432 1111 234455555554 8888888776554
No 167
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=57.08 E-value=3.1e+02 Score=30.41 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=71.3
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc-----EEEecCCCCCCCceeeEEEE-----ECCEEEEEeCccCCCCCC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE-----WKVISSPNSPPPRSAHQAVS-----WKNYLYIFGGEFTSPNQE 150 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~-----W~~l~~~~~P~~R~~hs~~~-----~~~~iyV~GG~~~~~~~~ 150 (602)
.+-=|+.||+ -.+|.+||+.... .+.| .|--.|+.-. .++.|+|+.|.
T Consensus 178 ~GaR~~sGs~---------Dy~v~~wDf~gMdas~~~fr~l------~P~E~h~i~sl~ys~Tg~~iLvvsg~------- 235 (641)
T KOG0772|consen 178 SGARFVSGSL---------DYTVKFWDFQGMDASMRSFRQL------QPCETHQINSLQYSVTGDQILVVSGS------- 235 (641)
T ss_pred CCceeeeccc---------cceEEEEecccccccchhhhcc------CcccccccceeeecCCCCeEEEEecC-------
Confidence 4556667773 3467778776442 3333 2333444333 26888888885
Q ss_pred cceecCeEEEEECCCCcEEEcccCCC----CCCCcccEEEEE-------CCEEEEEcCccCCCCCeeeeceEEEEECCC-
Q 007468 151 RFHHYKDFWMLDLKTNQWEQLNLKGC----PSPRSGHRMVLY-------KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ- 218 (602)
Q Consensus 151 ~~~~~~dv~~yd~~t~~W~~~~~~~~----p~~R~~h~~~~~-------~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t- 218 (602)
...-+||-....|....-... -....+|.+.+. +...|+--+.++ ++-+||...
T Consensus 236 -----aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg---------tlRiWdv~~~ 301 (641)
T KOG0772|consen 236 -----AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG---------TLRIWDVNNT 301 (641)
T ss_pred -----cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC---------cEEEEecCCc
Confidence 234577877777766532111 233456666543 334666666544 233344332
Q ss_pred -CceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccC
Q 007468 219 -FKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSK 256 (602)
Q Consensus 219 -~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~ 256 (602)
.+-+.+.+.+. ...|.-.+.|.+ ++.+ |.+|...
T Consensus 302 k~q~qVik~k~~---~g~Rv~~tsC~~nrdg~~-iAagc~D 338 (641)
T KOG0772|consen 302 KSQLQVIKTKPA---GGKRVPVTSCAWNRDGKL-IAAGCLD 338 (641)
T ss_pred hhheeEEeeccC---CCcccCceeeecCCCcch-hhhcccC
Confidence 33444444432 234555555666 5555 6666543
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=54.77 E-value=2.4e+02 Score=28.34 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=63.1
Q ss_pred CCcEEEecCCC---CCCCceeeEEEE-ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEE
Q 007468 110 KQEWKVISSPN---SPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRM 185 (602)
Q Consensus 110 ~~~W~~l~~~~---~P~~R~~hs~~~-~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~ 185 (602)
+..|+...++. .|.|-...-... -.|.|+..||- ..++..|+++++.++.-- --.-|-|+.
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------------~~~y~~dlE~G~i~r~~r---GHtDYvH~v 162 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------------GVIYQVDLEDGRIQREYR---GHTDYVHSV 162 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------------eEEEEEEecCCEEEEEEc---CCcceeeee
Confidence 34576555443 234433322222 35888888873 357889999999876532 234455666
Q ss_pred EEECCEE-EEEcCccCCCCCeeeeceEEEEECCCCceEE-eccCCCCCCCCCccce--eEEEeCCEEEEEcCc
Q 007468 186 VLYKHKI-IVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGF--QFFVYQDEVFLYGGY 254 (602)
Q Consensus 186 ~~~~~~L-yv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~-v~~~~~~~~P~~R~~~--~~~~~~~~Iyv~GG~ 254 (602)
+.-+..- ++-|+-+ ..+-++|+.|.+-.+ +.+.....+..|..+- .+...+..-+|.||-
T Consensus 163 v~R~~~~qilsG~ED---------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG 226 (325)
T KOG0649|consen 163 VGRNANGQILSGAED---------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG 226 (325)
T ss_pred eecccCcceeecCCC---------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence 6543322 2344433 356778888765433 3333222222333333 333445555555553
No 169
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.58 E-value=6.2 Score=41.44 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.9
Q ss_pred HHcCCC
Q 007468 587 ANLGLS 592 (602)
Q Consensus 587 ~~~~~~ 592 (602)
..-|+.
T Consensus 346 ~stG~~ 351 (514)
T KOG3130|consen 346 NSTGSG 351 (514)
T ss_pred cccccc
Confidence 344555
No 170
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=54.40 E-value=2.7e+02 Score=28.89 Aligned_cols=191 Identities=14% Similarity=0.168 Sum_probs=83.6
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCCCcceecCeEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQERFHHYKDFW 159 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~~~~~~~~dv~ 159 (602)
++..||.|-. .-|+.-.-...+|..++... +.|...+...++ .+.++++|.. ..+|
T Consensus 71 ~~~g~ivG~~----------g~ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~~~l~~~~------------G~iy 127 (302)
T PF14870_consen 71 GNEGWIVGEP----------GLLLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGSAELAGDR------------GAIY 127 (302)
T ss_dssp TTEEEEEEET----------TEEEEESSTTSS-EE----T-T-SS-EEEEEEEETTEEEEEETT--------------EE
T ss_pred CCceEEEcCC----------ceEEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCcEEEEcCC------------CcEE
Confidence 6778887641 12333333456899986321 344444555555 5677777643 2344
Q ss_pred EEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccc
Q 007468 160 MLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSG 238 (602)
Q Consensus 160 ~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~ 238 (602)
+=.=.-.+|+.+... ...+-..+... ++++++++-. + +-+...|+-...|+..... ..|.-
T Consensus 128 ~T~DgG~tW~~~~~~---~~gs~~~~~r~~dG~~vavs~~-G--------~~~~s~~~G~~~w~~~~r~------~~~ri 189 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSE---TSGSINDITRSSDGRYVAVSSR-G--------NFYSSWDPGQTTWQPHNRN------SSRRI 189 (302)
T ss_dssp EESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETT-S--------SEEEEE-TT-SS-EEEE--------SSS-E
T ss_pred EeCCCCCCeeEcccC---CcceeEeEEECCCCcEEEEECc-c--------cEEEEecCCCccceEEccC------cccee
Confidence 444456689987541 12122222222 5566656542 1 1233557777889987664 34444
Q ss_pred eeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEe--CCCCeeEEeecCCCCCCCCcee---EEEEE-CCeEEE
Q 007468 239 FQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLD--PRTWEWSKVKKIGMPPGPRAGF---SMCVH-KKRALL 311 (602)
Q Consensus 239 ~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd--~~t~~W~~l~~~g~~P~~R~~~---s~~~~-~~~lyv 311 (602)
.+|... ++.|+++. ..+. ++.=+ -...+|.+... |....++ .+++. .+.+++
T Consensus 190 q~~gf~~~~~lw~~~-~Gg~----------------~~~s~~~~~~~~w~~~~~----~~~~~~~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-RGGQ----------------IQFSDDPDDGETWSEPII----PIKTNGYGILDLAYRPPNEIWA 248 (302)
T ss_dssp EEEEE-TTS-EEEEE-TTTE----------------EEEEE-TTEEEEE---B-----TTSS--S-EEEEEESSSS-EEE
T ss_pred hhceecCCCCEEEEe-CCcE----------------EEEccCCCCccccccccC----CcccCceeeEEEEecCCCCEEE
Confidence 445444 77888765 3332 22222 34557877432 3322333 33444 578999
Q ss_pred eccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 312 FGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 312 ~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.||... |++=.=.-+.|.+...
T Consensus 249 ~gg~G~---------------l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 249 VGGSGT---------------LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp EESTT----------------EEEESSTTSS-EE-GG
T ss_pred EeCCcc---------------EEEeCCCCccceECcc
Confidence 998632 3333333457887654
No 171
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=54.33 E-value=3e+02 Score=29.37 Aligned_cols=175 Identities=13% Similarity=0.032 Sum_probs=83.0
Q ss_pred eEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEE-EecCCCCCCCceeeEEEEE-CCEEEEEeCccCCCCC
Q 007468 72 CSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVSW-KNYLYIFGGEFTSPNQ 149 (602)
Q Consensus 72 ~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~-~l~~~~~P~~R~~hs~~~~-~~~iyV~GG~~~~~~~ 149 (602)
|........+..+||.+. + ..+.++|+.+.+-. .+. .....++.++- +++.++.+.+.
T Consensus 39 h~~~~~s~Dgr~~yv~~r---d-------g~vsviD~~~~~~v~~i~-----~G~~~~~i~~s~DG~~~~v~n~~----- 98 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR---D-------GTVSVIDLATGKVVATIK-----VGGNPRGIAVSPDGKYVYVANYE----- 98 (369)
T ss_dssp EEEEE-TT-SSEEEEEET---T-------SEEEEEETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEEE-----
T ss_pred eeEEEecCCCCEEEEEcC---C-------CeEEEEECCcccEEEEEe-----cCCCcceEEEcCCCCEEEEEecC-----
Confidence 444333222356888753 1 36889999988743 332 33444444443 44433444332
Q ss_pred CcceecCeEEEEECCCCcEE-EcccCCC----CCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEe
Q 007468 150 ERFHHYKDFWMLDLKTNQWE-QLNLKGC----PSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEI 224 (602)
Q Consensus 150 ~~~~~~~dv~~yd~~t~~W~-~~~~~~~----p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v 224 (602)
-+.+.++|..+.+=. .++..++ +.+|...-.+...+..||+-=.. ...+|..|.....=..+
T Consensus 99 -----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--------~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 99 -----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--------TGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp -----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--------TTEEEEEETTTSSCEEE
T ss_pred -----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--------CCeEEEEEeccccccce
Confidence 357889999887532 3333222 22333222222355556664332 36788888766432222
Q ss_pred ccCCCCCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCce
Q 007468 225 KPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAG 299 (602)
Q Consensus 225 ~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~ 299 (602)
... ...++-|-+... +++.|+. +... .+.+-++|..+..-..+-..|..|.+..+
T Consensus 166 ~~i-----~~g~~~~D~~~dpdgry~~v-a~~~--------------sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 166 TTI-----KVGRFPHDGGFDPDGRYFLV-AANG--------------SNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp EEE-----E--TTEEEEEE-TTSSEEEE-EEGG--------------GTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred eee-----cccccccccccCcccceeee-cccc--------------cceeEEEeeccceEEEEeecccccccccc
Confidence 222 345565665555 3333333 3322 24677888888765555444544444333
No 172
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=54.19 E-value=2.9e+02 Score=29.17 Aligned_cols=188 Identities=17% Similarity=0.121 Sum_probs=90.9
Q ss_pred cEEEEEcCCC--cEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEEEECCCC--cEEEcccCCCC
Q 007468 102 DLYRYDVEKQ--EWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN--QWEQLNLKGCP 177 (602)
Q Consensus 102 dv~~yd~~~~--~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~~~~~~~p 177 (602)
.+|+||..+. .|..-... . ++..-.+++.++.+|+... ...++.+|..+. .|+.-...+ .
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s~------------~g~~~al~~~tG~~~W~~~~~~~-~ 185 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGTD------------DGHLYALNADTGTLKWTYETPAP-L 185 (370)
T ss_pred eEEEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEecC------------CCeEEEEEccCCcEEEEEecCCc-c
Confidence 7999999644 68866543 1 4444445555666665531 245778887755 587443321 1
Q ss_pred CCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC--ceEEeccCCCCCCCCCccce--eEEEeCCEEEEEcC
Q 007468 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF--KWQEIKPRFGSMWPSPRSGF--QFFVYQDEVFLYGG 253 (602)
Q Consensus 178 ~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~v~~~~~~~~P~~R~~~--~~~~~~~~Iyv~GG 253 (602)
..+.....+.-.+.+|+- ... +...++.+|+.+. .|+.-...+ ..+..- ...+....||+-|+
T Consensus 186 ~~~~~~~~~~~~~~vy~~-~~~-------~~~~~~a~~~~~G~~~w~~~~~~~-----~~~~~~~~~~~~~~~~v~v~~~ 252 (370)
T COG1520 186 SLSIYGSPAIASGTVYVG-SDG-------YDGILYALNAEDGTLKWSQKVSQT-----IGRTAISTTPAVDGGPVYVDGG 252 (370)
T ss_pred ccccccCceeecceEEEe-cCC-------CcceEEEEEccCCcEeeeeeeecc-----cCcccccccccccCceEEECCc
Confidence 222222222445556654 221 1126899999764 587533321 111110 12233455555555
Q ss_pred ccCCCCCccCCCCCCceeeeEEEEeCCC--CeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccC
Q 007468 254 YSKEVSTDKNQSEKGIIHSDLWSLDPRT--WEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN 331 (602)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~n 331 (602)
.... .....++++|..+ ..|..-........+.........++++|+....... ....
T Consensus 253 ~~~~-----------~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~---------~~~~ 312 (370)
T COG1520 253 VYAG-----------SYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDG---------RGSG 312 (370)
T ss_pred EEEE-----------ecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEecccc---------cccc
Confidence 2110 1122377887654 4688765411111111222222236777776443221 1245
Q ss_pred eeEEEEC
Q 007468 332 ELYGFQL 338 (602)
Q Consensus 332 dv~~yd~ 338 (602)
.+++|+.
T Consensus 313 ~~~~~~~ 319 (370)
T COG1520 313 SLYALAD 319 (370)
T ss_pred ceEEEec
Confidence 6777765
No 173
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=52.93 E-value=3.2e+02 Score=29.34 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=51.6
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCE-EEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEee
Q 007468 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDE-VFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVK 288 (602)
Q Consensus 210 ~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 288 (602)
.||..+........+... .+.-..+|-..+.++. |+..+...+. ...-+..||+.+..=+.+.
T Consensus 217 RiW~i~~dg~~~~~v~~~----~~~e~~gHEfw~~DG~~i~y~~~~~~~------------~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 217 RIWTINTDGSNVKKVHRR----MEGESVGHEFWVPDGSTIWYDSYTPGG------------QDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp SEEEEETTS---EESS-------TTEEEEEEEE-TTSS-EEEEEEETTT--------------EEEEEE-TTT--EEEEE
T ss_pred EEEEEEcCCCcceeeecC----CCCcccccccccCCCCEEEEEeecCCC------------CceEEEeeCCCCCCceEEE
Confidence 566666655444444332 1344555555555443 3333332221 2223778899876434443
Q ss_pred cCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccC--eeEEEECCCCceEEeEe
Q 007468 289 KIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLN--ELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 289 ~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~n--dv~~yd~~t~~W~~l~~ 348 (602)
.+ |++.|-++..+++|++--|..............+.+ -||+|++....-..+..
T Consensus 281 ~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~ 337 (386)
T PF14583_consen 281 EM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR 337 (386)
T ss_dssp EE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE
T ss_pred eC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee
Confidence 32 457788888899998876654221110000011122 36667787777666655
No 174
>PRK01029 tolB translocation protein TolB; Provisional
Probab=52.32 E-value=3.4e+02 Score=29.48 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=37.3
Q ss_pred eeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-CCeEEEeccccccccccccccccccCeeEEEECCCCceEEeEe
Q 007468 272 SDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-KKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHRWYPLEL 348 (602)
Q Consensus 272 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~W~~l~~ 348 (602)
.++++||+.+...+.+... ++........ +++.++|-.... -...||.+|+.+.....+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~-----~~~~~~p~wSpDG~~L~f~~~~~-----------g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS-----PENKESPSWAIDSLHLVYSAGNS-----------NESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC-----CCCccceEECCCCCEEEEEECCC-----------CCceEEEEECCCCCEEEeec
Confidence 4699999999988877542 1111222232 445444432211 13579999999998887764
No 175
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=52.16 E-value=2.5e+02 Score=27.88 Aligned_cols=150 Identities=14% Similarity=0.213 Sum_probs=74.2
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCC-CcEEEecCCCCCCCceeeEEEE-E-CCEEEEEeCccCCCCCCcceecCe
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEK-QEWKVISSPNSPPPRSAHQAVS-W-KNYLYIFGGEFTSPNQERFHHYKD 157 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~-~~W~~l~~~~~P~~R~~hs~~~-~-~~~iyV~GG~~~~~~~~~~~~~~d 157 (602)
+++|++. .+.. ... ....++.|.... .+|....... +.....+.+.+ . ++.||++--.. .. ..
T Consensus 118 ~G~l~~~--~~~~-~~~-~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~--------~~ 183 (275)
T PF13088_consen 118 DGRLIAP--YYHE-SGG-SFSAFVYYSDDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN--------DD 183 (275)
T ss_dssp TTEEEEE--EEEE-SSC-EEEEEEEEESSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS--------TE
T ss_pred CCCEEEE--Eeec-ccc-CcceEEEEeCCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC--------Cc
Confidence 6788776 2111 111 234445566554 4698776532 22244444444 3 57888875432 11 12
Q ss_pred EE-EEECC-CCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 158 FW-MLDLK-TNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 158 v~-~yd~~-t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
++ .+... -.+|+...+..+|.+.+...++.+ ++.++++... ...+ ..-.++.-.-...+|..+.....+ +.
T Consensus 184 ~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~r---~~l~l~~S~D~g~tW~~~~~i~~~--~~ 257 (275)
T PF13088_consen 184 IYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNN-PDGR---SNLSLYVSEDGGKTWSRPKTIDDG--PN 257 (275)
T ss_dssp EEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEEC-SSTS---EEEEEEEECTTCEEEEEEEEEEEE--E-
T ss_pred EEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEEC-CCCC---CceEEEEEeCCCCcCCccEEEeCC--CC
Confidence 33 33333 347998765445766666555554 5688777772 2112 112232222236789876555211 21
Q ss_pred Ccccee-EEEe-CCEEEE
Q 007468 235 PRSGFQ-FFVY-QDEVFL 250 (602)
Q Consensus 235 ~R~~~~-~~~~-~~~Iyv 250 (602)
..+++. ++.. ++.|||
T Consensus 258 ~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 258 GDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CCEEEEEEEEEETTEEEE
T ss_pred CcEECCeeEEeCCCcCCC
Confidence 234444 4444 679886
No 176
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.74 E-value=2.7e+02 Score=28.03 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=32.0
Q ss_pred eCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCC-ceEEeEe
Q 007468 278 DPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH-RWYPLEL 348 (602)
Q Consensus 278 d~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~-~W~~l~~ 348 (602)
+.....|+.---. ..|.+....+-.+.++.|-|-||.+ .|.+|-.... +|.++..
T Consensus 241 ~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdN---------------kvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDN---------------KVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCccCcccccccc-cCCcceEEEEEeccccEEEEecCCc---------------EEEEEEeCCCCcEEEccc
Confidence 3345567654221 2355555555555677777777753 4666666544 8988765
No 177
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=51.33 E-value=1.8e+02 Score=27.83 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=43.3
Q ss_pred eeeCcEEEEEcCCCcEEEecCCCCC---CCceeeEEEEE-C-CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcc
Q 007468 98 YVYGDLYRYDVEKQEWKVISSPNSP---PPRSAHQAVSW-K-NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLN 172 (602)
Q Consensus 98 ~~~~dv~~yd~~~~~W~~l~~~~~P---~~R~~hs~~~~-~-~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~ 172 (602)
.....+|++|..++.|..+...+.+ .|. . +..+ + +.++|+|...+.- .--..+|+|++.++.-+.+-
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~-i~WiDD~~L~vIIG~a~GTv-----S~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--Y-IEWIDDNNLAVIIGYAHGTV-----SKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc--e-eEEecCCcEEEEEccccceE-----ccCCeEEEEEccCCceeEee
Confidence 4578999999999998866443322 233 1 2233 3 3466666443321 12367999999999988876
Q ss_pred c
Q 007468 173 L 173 (602)
Q Consensus 173 ~ 173 (602)
.
T Consensus 157 ~ 157 (200)
T PF15525_consen 157 E 157 (200)
T ss_pred e
Confidence 5
No 178
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=50.29 E-value=3.5e+02 Score=28.98 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=58.7
Q ss_pred CCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCc--cceeEE
Q 007468 165 TNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR--SGFQFF 242 (602)
Q Consensus 165 t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R--~~~~~~ 242 (602)
.+.|+.+.. ... ..--++.+++++|++.- ...++.++.+- .=+++.+...+.+...+ .....+
T Consensus 189 ~~~Wt~l~~---~~~-~~~DIi~~kGkfYAvD~----------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLV 253 (373)
T PLN03215 189 GNVLKALKQ---MGY-HFSDIIVHKGQTYALDS----------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFV 253 (373)
T ss_pred CCeeeEccC---CCc-eeeEEEEECCEEEEEcC----------CCeEEEEecCC-ceeeecceecccccCCcccCceeEE
Confidence 489999864 222 23456788999999822 24566666421 12232222111001111 112345
Q ss_pred EeCCEEEEEcCccCCCCCcc-C-C-CCCCceeeeEEEEeCCCCeeEEeecCC
Q 007468 243 VYQDEVFLYGGYSKEVSTDK-N-Q-SEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (602)
Q Consensus 243 ~~~~~Iyv~GG~~~~~~~~~-~-~-~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (602)
...+.||++..+........ . . .......-.||.+|....+|.++..+|
T Consensus 254 Es~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 254 ECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 55788999988643200000 0 0 001123346788898899999998764
No 179
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=50.16 E-value=3.3e+02 Score=28.66 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=90.5
Q ss_pred ceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCC---CCceeeEEEE-ECCEEEEEeCccCC
Q 007468 71 NCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSP---PPRSAHQAVS-WKNYLYIFGGEFTS 146 (602)
Q Consensus 71 ~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P---~~R~~hs~~~-~~~~iyV~GG~~~~ 146 (602)
.|.+.+.| ++++++.--. -...++.|+...+..........+ -||. -+.- .+..+|++.=.++
T Consensus 147 ~H~a~~tP--~~~~l~v~DL--------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH--i~FHpn~k~aY~v~EL~s- 213 (346)
T COG2706 147 VHSANFTP--DGRYLVVPDL--------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRH--IVFHPNGKYAYLVNELNS- 213 (346)
T ss_pred cceeeeCC--CCCEEEEeec--------CCceEEEEEcccCccccccccccCCCCCcce--EEEcCCCcEEEEEeccCC-
Confidence 56666666 4444443222 135778888887776654432221 1232 2111 1456888865432
Q ss_pred CCCCcceecCeEEEEECCCCcEEEcccCCC-CCC---CcccEEEEE---CCEEEEEcCccCCCCCeeeeceEEEEE--CC
Q 007468 147 PNQERFHHYKDFWMLDLKTNQWEQLNLKGC-PSP---RSGHRMVLY---KHKIIVFGGFYDTLREVRYYNDLYVFD--LD 217 (602)
Q Consensus 147 ~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~-p~~---R~~h~~~~~---~~~Lyv~GG~~~~~~~~~~~~~v~~yd--~~ 217 (602)
.=++|.||....+.+.+..... |.. -.+.++..+ ++.||+. ++..+.+.+|. +.
T Consensus 214 --------tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas---------NRg~dsI~~f~V~~~ 276 (346)
T COG2706 214 --------TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS---------NRGHDSIAVFSVDPD 276 (346)
T ss_pred --------EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe---------cCCCCeEEEEEEcCC
Confidence 2468888888888877765322 322 222233333 6678875 22356777774 44
Q ss_pred CCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecC
Q 007468 218 QFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKI 290 (602)
Q Consensus 218 t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 290 (602)
+.+-..+...+.. ...||.. .+...++.|++. +.... .-.+|.-|+.+.+-+.+...
T Consensus 277 ~g~L~~~~~~~te-g~~PR~F-~i~~~g~~Liaa-~q~sd-------------~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 277 GGKLELVGITPTE-GQFPRDF-NINPSGRFLIAA-NQKSD-------------NITVFERDKETGRLTLLGRY 333 (346)
T ss_pred CCEEEEEEEeccC-CcCCccc-eeCCCCCEEEEE-ccCCC-------------cEEEEEEcCCCceEEecccc
Confidence 5544443332111 1345542 223334455554 33322 13467778888888877553
No 180
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.84 E-value=13 Score=42.51 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=7.1
Q ss_pred EEECCeEEEeccc
Q 007468 303 CVHKKRALLFGGV 315 (602)
Q Consensus 303 ~~~~~~lyv~GG~ 315 (602)
+++.|.-+++||-
T Consensus 726 all~G~~i~y~g~ 738 (988)
T KOG2038|consen 726 ALLEGEEIQYGGP 738 (988)
T ss_pred HHhcCceeecCCC
Confidence 3445555566664
No 181
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.66 E-value=2.9e+02 Score=27.61 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEEC--CEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWK--NYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~--~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..++.+|..+++--..=.+. -..-.++.++ ..+.+.|++. ..+..||..+++.+.+.. +-.
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH----~aqVNtV~fNeesSVv~SgsfD-----------~s~r~wDCRS~s~ePiQi--lde 143 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGH----LAQVNTVRFNEESSVVASGSFD-----------SSVRLWDCRSRSFEPIQI--LDE 143 (307)
T ss_pred ceEEEEEcccCeeeeecccc----cceeeEEEecCcceEEEecccc-----------ceeEEEEcccCCCCccch--hhh
Confidence 35788898887543221110 0111233343 3455555543 357789999998887776 567
Q ss_pred CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 179 PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 179 ~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
.+-+-.++.+.+..+|.|-.++ .+-.||+...
T Consensus 144 a~D~V~Si~v~~heIvaGS~DG---------tvRtydiR~G 175 (307)
T KOG0316|consen 144 AKDGVSSIDVAEHEIVAGSVDG---------TVRTYDIRKG 175 (307)
T ss_pred hcCceeEEEecccEEEeeccCC---------cEEEEEeecc
Confidence 7888888888888888776554 4667887654
No 182
>PTZ00420 coronin; Provisional
Probab=48.31 E-value=4.6e+02 Score=29.82 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCcEE-EecCCCCCCCceeeEEEE-ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCc
Q 007468 101 GDLYRYDVEKQEWK-VISSPNSPPPRSAHQAVS-WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQ 167 (602)
Q Consensus 101 ~dv~~yd~~~~~W~-~l~~~~~P~~R~~hs~~~-~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~ 167 (602)
..|.+||+.+..=. .+. .+ ..-+++.. .++.+++.++.. ..+.+||+.+..
T Consensus 148 gtIrIWDl~tg~~~~~i~---~~--~~V~SlswspdG~lLat~s~D-----------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN---MP--KKLSSLKWNIKGNLLSGTCVG-----------KHMHIIDPRKQE 200 (568)
T ss_pred CeEEEEECCCCcEEEEEe---cC--CcEEEEEECCCCCEEEEEecC-----------CEEEEEECCCCc
Confidence 46778888876422 121 11 11122222 256677766532 357889998764
No 183
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.16 E-value=1.3e+02 Score=29.54 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=66.6
Q ss_pred cEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCcc
Q 007468 183 HRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDK 262 (602)
Q Consensus 183 h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~ 262 (602)
.+....+++||.--|..+ .+.+.++|+.+.+=..-.+.+ |..-++-+.+.+++.+|..--..+.
T Consensus 49 QGL~~~~g~i~esTG~yg-------~S~ir~~~L~~gq~~~s~~l~----~~~~FgEGit~~gd~~y~LTw~egv----- 112 (262)
T COG3823 49 QGLEYLDGHILESTGLYG-------FSKIRVSDLTTGQEIFSEKLA----PDTVFGEGITKLGDYFYQLTWKEGV----- 112 (262)
T ss_pred cceeeeCCEEEEeccccc-------cceeEEEeccCceEEEEeecC----CccccccceeeccceEEEEEeccce-----
Confidence 345666889999888766 467999999876533333331 3345667788889999998766554
Q ss_pred CCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccc
Q 007468 263 NQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (602)
Q Consensus 263 ~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~ 315 (602)
.+.||+.+.. ..|..+.+--+.+++.-+..|++--|.
T Consensus 113 -----------af~~d~~t~~-----~lg~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 113 -----------AFKYDADTLE-----ELGRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred -----------eEEEChHHhh-----hhcccccCCcceeeecCCcceEeeCCc
Confidence 5677765532 223345555666777777777666664
No 184
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.51 E-value=2.9e+02 Score=27.20 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCc--EEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQE--WKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDF 158 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~--W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv 158 (602)
+++||.--|.+ -.+.+.++|..+.+ |+.- .. |+.-++-..+.+++.+|..-=. -.-.
T Consensus 55 ~g~i~esTG~y-------g~S~ir~~~L~~gq~~~s~~--l~-~~~~FgEGit~~gd~~y~LTw~-----------egva 113 (262)
T COG3823 55 DGHILESTGLY-------GFSKIRVSDLTTGQEIFSEK--LA-PDTVFGEGITKLGDYFYQLTWK-----------EGVA 113 (262)
T ss_pred CCEEEEecccc-------ccceeEEEeccCceEEEEee--cC-CccccccceeeccceEEEEEec-----------ccee
Confidence 56777766652 23588999999664 4432 11 3455677888889999987421 1224
Q ss_pred EEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 159 WMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 159 ~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
+.||..+- +.+.. .+.+--+.+.+.-+..|++--|. ..+..-||.+.
T Consensus 114 f~~d~~t~--~~lg~--~~y~GeGWgLt~d~~~LimsdGs----------atL~frdP~tf 160 (262)
T COG3823 114 FKYDADTL--EELGR--FSYEGEGWGLTSDDKNLIMSDGS----------ATLQFRDPKTF 160 (262)
T ss_pred EEEChHHh--hhhcc--cccCCcceeeecCCcceEeeCCc----------eEEEecCHHHh
Confidence 56776543 33333 34555666777777777776662 34555577654
No 185
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=47.32 E-value=3.4e+02 Score=28.03 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
+..-.++||. -..|-+||..+..=..+.+...|. |+-+-+ +....+|.||++. .+-.
T Consensus 64 d~~~~~~G~~---------dg~vr~~Dln~~~~~~igth~~~i-~ci~~~--~~~~~vIsgsWD~-----------~ik~ 120 (323)
T KOG1036|consen 64 DESTIVTGGL---------DGQVRRYDLNTGNEDQIGTHDEGI-RCIEYS--YEVGCVISGSWDK-----------TIKF 120 (323)
T ss_pred CCceEEEecc---------CceEEEEEecCCcceeeccCCCce-EEEEee--ccCCeEEEcccCc-----------cEEE
Confidence 3445556662 357788999888777776544222 222111 3455678888754 3556
Q ss_pred EECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCC
Q 007468 161 LDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQF 219 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~ 219 (602)
+|+.... .....-.+-.-++|-+.+++|+| |+. -..|..||+.+.
T Consensus 121 wD~R~~~----~~~~~d~~kkVy~~~v~g~~LvV-g~~---------~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 121 WDPRNKV----VVGTFDQGKKVYCMDVSGNRLVV-GTS---------DRKVLIYDLRNL 165 (323)
T ss_pred Eeccccc----cccccccCceEEEEeccCCEEEE-eec---------CceEEEEEcccc
Confidence 6776511 11111222244555555666554 543 246888888764
No 186
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=46.64 E-value=6.5 Score=36.26 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.6
Q ss_pred cCeEEEEec
Q 007468 463 KDTLYVYGG 471 (602)
Q Consensus 463 ~~~lyv~GG 471 (602)
.+-+||.|-
T Consensus 96 sGPVhisG~ 104 (149)
T PF03066_consen 96 SGPVHISGQ 104 (149)
T ss_dssp SS-EEEEEE
T ss_pred CCCEEeeCc
Confidence 344444444
No 187
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=46.60 E-value=14 Score=42.07 Aligned_cols=7 Identities=0% Similarity=0.643 Sum_probs=3.9
Q ss_pred eEEEEec
Q 007468 465 TLYVYGG 471 (602)
Q Consensus 465 ~lyv~GG 471 (602)
.+|||=-
T Consensus 803 mvfIfKd 809 (960)
T KOG1189|consen 803 MVFIFKD 809 (960)
T ss_pred EEEEecc
Confidence 5666633
No 188
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=46.18 E-value=3.2e+02 Score=29.66 Aligned_cols=59 Identities=14% Similarity=0.329 Sum_probs=34.3
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 210 DLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 210 ~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
.|.+||+...+ .++..+ ++... .-....+ .+..++++|.+-. ||.|+-.+..|+.+
T Consensus 412 ~V~lwDLRKl~--n~kt~~---l~~~~-~v~s~~fD~SGt~L~~~g~~l~----------------Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 412 SVKLWDLRKLK--NFKTIQ---LDEKK-EVNSLSFDQSGTYLGIAGSDLQ----------------VYICKKKTKSWTEI 469 (506)
T ss_pred eEEEEEehhhc--ccceee---ccccc-cceeEEEcCCCCeEEeecceeE----------------EEEEecccccceee
Confidence 38888987654 222220 12211 1122222 5666777765433 78888889999999
Q ss_pred ecC
Q 007468 288 KKI 290 (602)
Q Consensus 288 ~~~ 290 (602)
...
T Consensus 470 ~~~ 472 (506)
T KOG0289|consen 470 KEL 472 (506)
T ss_pred ehh
Confidence 765
No 189
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=45.36 E-value=4.5e+02 Score=28.82 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=52.6
Q ss_pred CeEEEEECCCCcEEEcccCCCCCCCcccEEEE-ECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCC
Q 007468 156 KDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVL-YKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPS 234 (602)
Q Consensus 156 ~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~-~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~ 234 (602)
..+.+||+....=......+.+... ++++. ..+.+++.|+.+ ..|.++|+.+.+-...-. .
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D---------~tvriWd~~~~~~~~~l~-------~ 286 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD---------GTVRIWDVRTGECVRKLK-------G 286 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC---------CcEEEEeccCCeEEEeee-------c
Confidence 3577888844422211111233333 22222 255899999875 468888988843332211 1
Q ss_pred CccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCee
Q 007468 235 PRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEW 284 (602)
Q Consensus 235 ~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 284 (602)
...+-+++.+ ++.+++.+.+++. +.+||+.+..-
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~----------------i~vwd~~~~~~ 322 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGT----------------IRVWDLETGSK 322 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCcc----------------EEEEECCCCce
Confidence 2222233333 7788888877665 88888877663
No 190
>PTZ00420 coronin; Provisional
Probab=43.88 E-value=5.4e+02 Score=29.31 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=26.6
Q ss_pred eEEEEECCCCcEE-EcccCCCCCCCcccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCc
Q 007468 157 DFWMLDLKTNQWE-QLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFK 220 (602)
Q Consensus 157 dv~~yd~~t~~W~-~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~ 220 (602)
.+.+||+.+.+=. .+.. + .. -.++.+ ++.+++.++.+ ..+.+||+.+..
T Consensus 149 tIrIWDl~tg~~~~~i~~---~--~~-V~SlswspdG~lLat~s~D---------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 149 FVNIWDIENEKRAFQINM---P--KK-LSSLKWNIKGNLLSGTCVG---------KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEECCCCcEEEEEec---C--Cc-EEEEEECCCCCEEEEEecC---------CEEEEEECCCCc
Confidence 4778888776411 1111 1 11 122223 56777776642 468889998753
No 191
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=41.50 E-value=11 Score=37.37 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=5.0
Q ss_pred ECCeEEEe
Q 007468 305 HKKRALLF 312 (602)
Q Consensus 305 ~~~~lyv~ 312 (602)
.+|.+|+|
T Consensus 56 ~~g~~yLy 63 (303)
T KOG3064|consen 56 ENGVLYLY 63 (303)
T ss_pred cCCEEEEE
Confidence 36667665
No 192
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=41.41 E-value=4.2e+02 Score=27.35 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=20.1
Q ss_pred EEEEeCCCCeeEEeecCCCCCCCCceeEEEE--ECCeEEEecc
Q 007468 274 LWSLDPRTWEWSKVKKIGMPPGPRAGFSMCV--HKKRALLFGG 314 (602)
Q Consensus 274 v~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~--~~~~lyv~GG 314 (602)
+-.||+...+=..+-. ++..-++...+. ..++|++.|.
T Consensus 253 cRlyDlRaD~~~a~ys---~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYS---HDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eEEEeecCCcEEeeec---cCcccCCceeEEEcccccEEEeee
Confidence 6688887764332211 123334444333 3688877774
No 193
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.82 E-value=20 Score=33.52 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.6
Q ss_pred CCccCccc
Q 007468 450 KPCGRINS 457 (602)
Q Consensus 450 ~P~~R~~~ 457 (602)
.|..|..+
T Consensus 164 ~~s~~~~~ 171 (227)
T KOG3241|consen 164 FPSTSLEE 171 (227)
T ss_pred ccchhHHH
Confidence 45544443
No 194
>smart00284 OLF Olfactomedin-like domains.
Probab=39.40 E-value=4.2e+02 Score=26.78 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=78.6
Q ss_pred CCCCCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEEEEcCCCcEEEecCCCCCCC----cee--------eEEEE
Q 007468 65 APSPRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKVISSPNSPPP----RSA--------HQAVS 132 (602)
Q Consensus 65 ~P~~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~l~~~~~P~~----R~~--------hs~~~ 132 (602)
.|.+-.|...++. ++.||.--. ..+.|.+||+.+.+-..... +|.+ ++. .=.++
T Consensus 70 Lp~~~~GtG~VVY---ngslYY~~~---------~s~~iiKydL~t~~v~~~~~--Lp~a~y~~~~~Y~~~~~sdiDlAv 135 (255)
T smart00284 70 LPHAGQGTGVVVY---NGSLYFNKF---------NSHDICRFDLTTETYQKEPL--LNGAGYNNRFPYAWGGFSDIDLAV 135 (255)
T ss_pred CCCccccccEEEE---CceEEEEec---------CCccEEEEECCCCcEEEEEe--cCccccccccccccCCCccEEEEE
Confidence 3444455555555 566665332 24689999999997653222 1221 111 12333
Q ss_pred ECCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEE
Q 007468 133 WKNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 133 ~~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
-.+-|+|+=....+.. .--+-++|+.+-.-++.=..+.+.+..+. +.++=+.||+.-..... -..-.+
T Consensus 136 DE~GLWvIYat~~~~g------~ivvSkLnp~tL~ve~tW~T~~~k~sa~n-aFmvCGvLY~~~s~~~~-----~~~I~y 203 (255)
T smart00284 136 DENGLWVIYATEQNAG------KIVISKLNPATLTIENTWITTYNKRSASN-AFMICGILYVTRSLGSK-----GEKVFY 203 (255)
T ss_pred cCCceEEEEeccCCCC------CEEEEeeCcccceEEEEEEcCCCcccccc-cEEEeeEEEEEccCCCC-----CcEEEE
Confidence 3455666633221111 11234677766532222222234444443 34445678888542221 134578
Q ss_pred EEECCCCceEEeccCCCCCCCCCccceeEEEe---CCEEEEE
Q 007468 213 VFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY---QDEVFLY 251 (602)
Q Consensus 213 ~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~---~~~Iyv~ 251 (602)
.||+.+.+=..+... .+.+...+++.-+ +.+||+.
T Consensus 204 ayDt~t~~~~~~~i~----f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 204 AYDTNTGKEGHLDIP----FENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred EEECCCCccceeeee----eccccccceeceeCCCCCeEEEE
Confidence 899988764433222 1334444555544 6778875
No 195
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=39.38 E-value=9.9 Score=44.02 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHH
Q 007468 574 RRKEKRARIEQIRA 587 (602)
Q Consensus 574 ~~~~~~~~~~~~~~ 587 (602)
..++++.-.++...
T Consensus 509 ~~~gl~~s~e~~~~ 522 (713)
T PF03344_consen 509 PEKGLRSSREQQNK 522 (713)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 34444444444433
No 196
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=39.13 E-value=10 Score=44.26 Aligned_cols=14 Identities=0% Similarity=0.285 Sum_probs=7.1
Q ss_pred cccCeeEEEECCCC
Q 007468 328 LFLNELYGFQLDNH 341 (602)
Q Consensus 328 ~~~ndv~~yd~~t~ 341 (602)
.+..++|.+.+.++
T Consensus 533 ~~~~~~~lv~~t~~ 546 (787)
T PF03115_consen 533 HWVSSFFLVKVTKD 546 (787)
T ss_dssp EEEEEEEEEEESS-
T ss_pred cEEEEEEEEEEecc
Confidence 34455666665553
No 197
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=38.71 E-value=4e+02 Score=26.37 Aligned_cols=204 Identities=13% Similarity=0.123 Sum_probs=94.4
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcC-CCcEEEecC---C---CCCCCceeeEEEEECCEEEEEeCccCCCCCCcce
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVE-KQEWKVISS---P---NSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFH 153 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~-~~~W~~l~~---~---~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~ 153 (602)
+++|++|-.............-.+.+... ..+|..... . ..+.+-..+.+..-++.+++. .+.... .
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~~~-----~ 131 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHESG-----G 131 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEESS-----C
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-Eeeccc-----c
Confidence 68888886321111100001111255555 458986542 1 111112222233347777776 211111 1
Q ss_pred ecCeEEEEECCC-CcEEEcccCCCCCCCcccEEEE-E-CCEEEEEcCccCCCCCeeeeceEEEEECCC-CceEEeccCCC
Q 007468 154 HYKDFWMLDLKT-NQWEQLNLKGCPSPRSGHRMVL-Y-KHKIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEIKPRFG 229 (602)
Q Consensus 154 ~~~dv~~yd~~t-~~W~~~~~~~~p~~R~~h~~~~-~-~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~W~~v~~~~~ 229 (602)
....+..|.... .+|+...... +.....+.+.+ . ++.||++--.. .. ..-++.+..+. .+|+...+.
T Consensus 132 ~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-----~~~~~~~S~D~G~TWs~~~~~-- 202 (275)
T PF13088_consen 132 SFSAFVYYSDDGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-----DDIYISRSTDGGRTWSPPQPT-- 202 (275)
T ss_dssp EEEEEEEEESSTTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS-----TEEEEEEESSTTSS-EEEEEE--
T ss_pred CcceEEEEeCCCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC-----CcEEEEEECCCCCcCCCceec--
Confidence 233445555554 4698887621 22234444443 2 67888875432 10 12333444443 569986533
Q ss_pred CCCCCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCcee-EEEEE-C
Q 007468 230 SMWPSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGF-SMCVH-K 306 (602)
Q Consensus 230 ~~~P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~-s~~~~-~ 306 (602)
.+|.+.....++.+ ++.++++...... ...-.++.-.-...+|..+...-..|...+++ +++.. +
T Consensus 203 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~d 270 (275)
T PF13088_consen 203 -NLPNPNSSISLVRLSDGRLLLVYNNPDG-----------RSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPD 270 (275)
T ss_dssp -ECSSCCEEEEEEECTTSEEEEEEECSST-----------SEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEET
T ss_pred -ccCcccCCceEEEcCCCCEEEEEECCCC-----------CCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCC
Confidence 12555555555554 6688877773211 22223443334478898765432112223444 44444 5
Q ss_pred CeEEE
Q 007468 307 KRALL 311 (602)
Q Consensus 307 ~~lyv 311 (602)
++|+|
T Consensus 271 g~l~i 275 (275)
T PF13088_consen 271 GKLYI 275 (275)
T ss_dssp TEEEE
T ss_pred CcCCC
Confidence 68876
No 198
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=38.22 E-value=4.7e+02 Score=27.05 Aligned_cols=130 Identities=19% Similarity=0.236 Sum_probs=68.7
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCc
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R 236 (602)
.+-.|+...+.-...-..++|. ..++..+..=.++||.+ ..|-+||+.+..=..+... -.+.
T Consensus 36 slrlYdv~~~~l~~~~~~~~pl----L~c~F~d~~~~~~G~~d---------g~vr~~Dln~~~~~~igth-----~~~i 97 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAPL----LDCAFADESTIVTGGLD---------GQVRRYDLNTGNEDQIGTH-----DEGI 97 (323)
T ss_pred cEEEEeccchhhhhheecCCce----eeeeccCCceEEEeccC---------ceEEEEEecCCcceeeccC-----CCce
Confidence 3667777766321111111111 22333355455567764 4688999998876666554 1221
Q ss_pred cceeEEE-eCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEeccc
Q 007468 237 SGFQFFV-YQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGV 315 (602)
Q Consensus 237 ~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~ 315 (602)
.+ +.. .....+|.||++.. +-.+|+... ... +..-.+-.-+++.+.+++| |+|+.
T Consensus 98 ~c--i~~~~~~~~vIsgsWD~~----------------ik~wD~R~~----~~~-~~~d~~kkVy~~~v~g~~L-vVg~~ 153 (323)
T KOG1036|consen 98 RC--IEYSYEVGCVISGSWDKT----------------IKFWDPRNK----VVV-GTFDQGKKVYCMDVSGNRL-VVGTS 153 (323)
T ss_pred EE--EEeeccCCeEEEcccCcc----------------EEEEecccc----ccc-cccccCceEEEEeccCCEE-EEeec
Confidence 11 111 24556788998876 667777651 111 1122333445555555554 55654
Q ss_pred cccccccccccccccCeeEEEECCCCc
Q 007468 316 VDMEMKGDVIMSLFLNELYGFQLDNHR 342 (602)
Q Consensus 316 ~~~~~~~~~~~~~~~ndv~~yd~~t~~ 342 (602)
. ..|.+||+.++.
T Consensus 154 ~--------------r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 154 D--------------RKVLIYDLRNLD 166 (323)
T ss_pred C--------------ceEEEEEccccc
Confidence 3 358889987753
No 199
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=37.45 E-value=5.3e+02 Score=27.39 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=66.8
Q ss_pred CEEEEEcceecCCCCceeeCcEEEEEcCCCcEEE-ecCCCCCCCceeeEEEEECCEEEEEeCccCCCCCCcceecCeEEE
Q 007468 82 TELILYGGEFYNGNKTYVYGDLYRYDVEKQEWKV-ISSPNSPPPRSAHQAVSWKNYLYIFGGEFTSPNQERFHHYKDFWM 160 (602)
Q Consensus 82 ~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~~W~~-l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~~~~~~~~~~~~dv~~ 160 (602)
..+||.-..++. ..+.++++|..+.+-.. ++.+. .|| +.+..-+..|||.-.+..-... -...+.+.+
T Consensus 13 ~~v~V~d~~~~~-----~~~~v~ViD~~~~~v~g~i~~G~--~P~--~~~spDg~~lyva~~~~~R~~~--G~~~d~V~v 81 (352)
T TIGR02658 13 RRVYVLDPGHFA-----ATTQVYTIDGEAGRVLGMTDGGF--LPN--PVVASDGSFFAHASTVYSRIAR--GKRTDYVEV 81 (352)
T ss_pred CEEEEECCcccc-----cCceEEEEECCCCEEEEEEEccC--CCc--eeECCCCCEEEEEecccccccc--CCCCCEEEE
Confidence 456666553211 23789999998876543 33333 233 2222235689998764322111 123467999
Q ss_pred EECCCCcEEEcccCCCCCCCc-----ccEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEE
Q 007468 161 LDLKTNQWEQLNLKGCPSPRS-----GHRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE 223 (602)
Q Consensus 161 yd~~t~~W~~~~~~~~p~~R~-----~h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~ 223 (602)
||+.+.+-..--+. .+.||. -+..++. +..|||.- .+ .-+.|-++|+.+.+-..
T Consensus 82 ~D~~t~~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~-------p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 82 IDPQTHLPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQ-FS-------PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EECccCcEEeEEcc-CCCchhhccCccceEEECCCCCEEEEec-CC-------CCCEEEEEECCCCcEEE
Confidence 99999875432221 134442 2222222 44677752 11 24688999998876544
No 200
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=37.38 E-value=3.8e+02 Score=25.75 Aligned_cols=71 Identities=14% Similarity=0.293 Sum_probs=44.0
Q ss_pred eecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--C-CEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 153 HHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--K-HKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 153 ~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~-~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
.....+|++|+.++.|..+.....+ ..+..--+.| + .-++|+|..++... --..||.|++.++.=+.+...
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~-~k~sPK~i~WiDD~~L~vIIG~a~GTvS---~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNE-EKYSPKYIEWIDDNNLAVIIGYAHGTVS---KGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcc-cccCCceeEEecCCcEEEEEccccceEc---cCCeEEEEEccCCceeEeeec
Confidence 3478899999999988766442111 1222223343 3 34666665444321 235799999999988887765
No 201
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=36.02 E-value=3.9e+02 Score=29.70 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=29.8
Q ss_pred CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCC
Q 007468 189 KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKE 257 (602)
Q Consensus 189 ~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~ 257 (602)
++..+++||.++ .|++|.+....-...... ...|..-+.+.+ ++..++.|-....
T Consensus 454 ~~~~vaVGG~Dg---------kvhvysl~g~~l~ee~~~-----~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 454 DGSEVAVGGQDG---------KVHVYSLSGDELKEEAKL-----LEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred CCCEEEEecccc---------eEEEEEecCCcccceeee-----ecccCCceEEEECCCCcEEEEeccCCc
Confidence 456777787653 377777765443222222 234444455555 5566666555444
No 202
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=33.93 E-value=33 Score=36.03 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.3
Q ss_pred eecCCh
Q 007468 499 IIPASE 504 (602)
Q Consensus 499 ~~~~~~ 504 (602)
|+|...
T Consensus 267 IIP~AV 272 (337)
T PTZ00007 267 LIPYAV 272 (337)
T ss_pred cccccH
Confidence 344333
No 203
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=33.15 E-value=25 Score=40.04 Aligned_cols=6 Identities=33% Similarity=0.169 Sum_probs=2.4
Q ss_pred cchhhc
Q 007468 483 DDLYSL 488 (602)
Q Consensus 483 ~Dl~~l 488 (602)
+|...|
T Consensus 172 nd~~~~ 177 (822)
T KOG2141|consen 172 NDDGKL 177 (822)
T ss_pred cccccc
Confidence 344443
No 204
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.96 E-value=1e+02 Score=20.92 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=16.1
Q ss_pred eEEEEECCeEEEeccccccccccccccccccCeeEEEECCC
Q 007468 300 FSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDN 340 (602)
Q Consensus 300 ~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t 340 (602)
.+.++.++++|+.+.. ..|++||+++
T Consensus 15 ~~~~v~~g~vyv~~~d---------------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD---------------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT---------------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC---------------CEEEEEeCCC
Confidence 4456778888876652 4599999864
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=31.87 E-value=3.8e+02 Score=27.92 Aligned_cols=103 Identities=10% Similarity=0.190 Sum_probs=55.2
Q ss_pred eCcEEEEEcCCCc-EEEecCCCCCCCceeeEEEEE---CCEEEEEeCccCCCCCCcceecCeEEEEEC-CCCcEEEcccC
Q 007468 100 YGDLYRYDVEKQE-WKVISSPNSPPPRSAHQAVSW---KNYLYIFGGEFTSPNQERFHHYKDFWMLDL-KTNQWEQLNLK 174 (602)
Q Consensus 100 ~~dv~~yd~~~~~-W~~l~~~~~P~~R~~hs~~~~---~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~-~t~~W~~~~~~ 174 (602)
.++|.+|.-..+. |........--.... .+-+ .++| |.++.. ...|++.. ...+|.....
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vt--gvdWap~snrI-vtcs~d-----------rnayVw~~~~~~~Wkptlv- 95 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVT--GVDWAPKSNRI-VTCSHD-----------RNAYVWTQPSGGTWKPTLV- 95 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCccee--EEeecCCCCce-eEccCC-----------CCccccccCCCCeecccee-
Confidence 3589999988888 987754321111111 1111 2344 333322 22445554 7788976544
Q ss_pred CCCCCCcccEEEEE----CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccC
Q 007468 175 GCPSPRSGHRMVLY----KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPR 227 (602)
Q Consensus 175 ~~p~~R~~h~~~~~----~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~ 227 (602)
.-|.+-++..+ +...|++|+-. .+-.|+.|.-+++-|..-...
T Consensus 96 ---LlRiNrAAt~V~WsP~enkFAVgSga-------r~isVcy~E~ENdWWVsKhik 142 (361)
T KOG1523|consen 96 ---LLRINRAATCVKWSPKENKFAVGSGA-------RLISVCYYEQENDWWVSKHIK 142 (361)
T ss_pred ---EEEeccceeeEeecCcCceEEeccCc-------cEEEEEEEecccceehhhhhC
Confidence 33444344333 45556665521 256888898877777554433
No 206
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=31.60 E-value=6.1e+02 Score=26.33 Aligned_cols=104 Identities=21% Similarity=0.141 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCC-cEEEcccCC--
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTN-QWEQLNLKG-- 175 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~~~~~~-- 175 (602)
+.+++|++.+..=+....+ ... .+...+ ++.|++.. ..++++++.+. .|+.+....
T Consensus 47 ~~i~r~~~~~g~~~~~~~p---~~~--~~~~~~d~~g~Lv~~~--------------~g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSP---GGF--SSGALIDAGGRLIACE--------------HGVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred CeEEEecCCcCceEEEECC---CCc--ccceeecCCCeEEEEc--------------cccEEEeccCCceeEEeccccCC
Confidence 4678888876655555432 222 222222 34454442 23556665433 335554422
Q ss_pred CCCCCcccEEEEECCEEEEEcCcc---CCCCCeeeeceEEEEECCCCceEEec
Q 007468 176 CPSPRSGHRMVLYKHKIIVFGGFY---DTLREVRYYNDLYVFDLDQFKWQEIK 225 (602)
Q Consensus 176 ~p~~R~~h~~~~~~~~Lyv~GG~~---~~~~~~~~~~~v~~yd~~t~~W~~v~ 225 (602)
.+..|.+=+.+.-.+.||+ |-.. .........-.||+|++ .....++.
T Consensus 108 ~~~~r~ND~~v~pdG~~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~ 158 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL 158 (307)
T ss_pred CCcCCCCceeEcCCCCEEE-eCCCccccCccccCCcceEEEEcC-CCCEEEee
Confidence 3666777666666777775 4333 11111234558999998 45555443
No 207
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=31.54 E-value=5.7e+02 Score=25.97 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=54.8
Q ss_pred CCcceEEEEecCCCCEEEEEcceecCCCCceeeCcEEE---EEcCCCcEE-EecCCCCCCCceeeEEEEECCEEEEEeCc
Q 007468 68 PRSNCSLNINPLKETELILYGGEFYNGNKTYVYGDLYR---YDVEKQEWK-VISSPNSPPPRSAHQAVSWKNYLYIFGGE 143 (602)
Q Consensus 68 ~R~~~s~~~~~~~~~~iyv~GG~~~~g~~~~~~~dv~~---yd~~~~~W~-~l~~~~~P~~R~~hs~~~~~~~iyV~GG~ 143 (602)
.-.-|+++.+ ++.-|.+|=...+..+. -+.-+|+ |+.-...-+ .+++- .-..-+..+.-.+++.||+.--.
T Consensus 135 vTe~HSFa~i---~~~~fA~GyHnGD~sPR-e~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRg 209 (367)
T PF12217_consen 135 VTELHSFATI---DDNQFAVGYHNGDVSPR-ELGFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRG 209 (367)
T ss_dssp -SEEEEEEE----SSS-EEEEEEE-SSSS--EEEEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEE
T ss_pred eeeeeeeeEe---cCCceeEEeccCCCCcc-eeeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcC
Confidence 4567888888 66677887543333322 1222222 111111122 22221 11223344455569999998532
Q ss_pred cCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcC
Q 007468 144 FTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGG 197 (602)
Q Consensus 144 ~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG 197 (602)
.... ..-+.+.+-+.....|+.+..+ ...-.+..-.+.+++.||+||-
T Consensus 210 t~~~-----~~GS~L~rs~d~G~~w~slrfp-~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 210 TLPT-----NPGSSLHRSDDNGQNWSSLRFP-NNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp S-TT-----S---EEEEESSTTSS-EEEE-T-T---SS---EEEETTEEEEEEE
T ss_pred cCCC-----CCcceeeeecccCCchhhcccc-ccccccCCCceeeCCEEEEEec
Confidence 2221 1235677777788899988652 1222233345677999999985
No 208
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=31.23 E-value=7.2e+02 Score=27.09 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=58.4
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEc-CccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCC
Q 007468 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFG-GFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWP 233 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~G-G~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P 233 (602)
..++|.||+.+.+-.++.. ..+...+-...-+++-++|. ...+ ...+++++++...=+++....
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G-------~p~I~~~~~~g~~~~riT~~~----- 325 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTN---GFGINTSPSWSPDGSKIVFTSDRGG-------RPQIYLYDLEGSQVTRLTFSG----- 325 (425)
T ss_pred CccEEEEcCCCCcceeccc---CCccccCccCCCCCCEEEEEeCCCC-------CcceEEECCCCCceeEeeccC-----
Confidence 3579999999887444332 22333333333344444443 2211 348999999988777776652
Q ss_pred CCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe-eEEeec
Q 007468 234 SPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE-WSKVKK 289 (602)
Q Consensus 234 ~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~-W~~l~~ 289 (602)
.... +-...-++..++|=++... . -++..+++.+.. |+.+..
T Consensus 326 ~~~~-~p~~SpdG~~i~~~~~~~g-----------~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 326 GGNS-NPVWSPDGDKIVFESSSGG-----------Q--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCc-CccCCCCCCEEEEEeccCC-----------c--eeeEEeccCCCCcEEEccc
Confidence 1222 2222223433333333322 2 558888887766 888865
No 209
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=30.87 E-value=30 Score=37.99 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=17.0
Q ss_pred EcCCCcEEEecCCCCCCCceeeEEEEECCEEEEEeCccC
Q 007468 107 DVEKQEWKVISSPNSPPPRSAHQAVSWKNYLYIFGGEFT 145 (602)
Q Consensus 107 d~~~~~W~~l~~~~~P~~R~~hs~~~~~~~iyV~GG~~~ 145 (602)
++..-.|+.+.... +..+..-++.+|=|+|+..
T Consensus 47 ei~~~~w~k~~r~~------~LrV~tk~g~~~~~~GF~d 79 (615)
T KOG0526|consen 47 EIDKVKWQKGVRGY------GLRVFTKDGGVYRFDGFRD 79 (615)
T ss_pred Hhhhhhhhhhcccc------ceEEEccCCceEEecCcCH
Confidence 44555677664321 1112222567788888643
No 210
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=30.83 E-value=21 Score=34.62 Aligned_cols=7 Identities=57% Similarity=0.544 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 007468 582 IEQIRAN 588 (602)
Q Consensus 582 ~~~~~~~ 588 (602)
-||-+++
T Consensus 288 yeqe~e~ 294 (303)
T COG5129 288 YEQEREN 294 (303)
T ss_pred hHhhhhh
Confidence 3455444
No 211
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=30.32 E-value=52 Score=36.03 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=22.1
Q ss_pred eeeeecchhhcccCCCCccEE-eecCCh---h-hhhhccCCCCCCC
Q 007468 478 QEITLDDLYSLNLSKLDEWKC-IIPASE---S-EWVEASEGEDEDD 518 (602)
Q Consensus 478 ~~~~l~Dl~~ldl~~~~~W~~-~~~~~~---~-~w~~~~~~~~~~~ 518 (602)
+.+.++|.+-|+-.. .+-+. -+|-.- + .|.+.+++|++..
T Consensus 359 ~~vr~Dd~~f~~~~e-q~~~~aavpkGts~yqa~w~~deeee~~q~ 403 (769)
T COG5177 359 TTVRIDDHGFLPGRE-QTSKKAAVPKGTSFYQAKWAEDEEEEDGQC 403 (769)
T ss_pred ceeEecccccCCccc-ccchhhccCCCCcccceeecccchhhcccc
Confidence 447788988887655 32221 233222 2 4988755544444
No 212
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=8.1e+02 Score=27.27 Aligned_cols=172 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCcEEEecCCCCCCCceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCC
Q 007468 101 GDLYRYDVEKQEWKVISSPNSPPPRSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPS 178 (602)
Q Consensus 101 ~dv~~yd~~~~~W~~l~~~~~P~~R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~ 178 (602)
..||+++..+..-..+.... +...+++.+ .+..+.+|=..+. |.+||..+.. .+.. +-.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~g~-----------v~iwD~~~~k--~~~~--~~~ 257 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGTSDGT-----------VQIWDVKEQK--KTRT--LRG 257 (484)
T ss_pred ceEEEEecCCCceEEeEecC----CCceEEEEECCCCCEEEEeecCCe-----------EEEEehhhcc--cccc--ccC
Q ss_pred -CCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCccceeEEEe-CCEEEEEcCccC
Q 007468 179 -PRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVY-QDEVFLYGGYSK 256 (602)
Q Consensus 179 -~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~-~~~Iyv~GG~~~ 256 (602)
-...-++..++..++..|..+. .+..+|.....=..-... -....-|+.... ++..+.-||.+.
T Consensus 258 ~h~~rvg~laW~~~~lssGsr~~---------~I~~~dvR~~~~~~~~~~-----~H~qeVCgLkws~d~~~lASGgnDN 323 (484)
T KOG0305|consen 258 SHASRVGSLAWNSSVLSSGSRDG---------KILNHDVRISQHVVSTLQ-----GHRQEVCGLKWSPDGNQLASGGNDN 323 (484)
T ss_pred CcCceeEEEeccCceEEEecCCC---------cEEEEEEecchhhhhhhh-----cccceeeeeEECCCCCeeccCCCcc
Q ss_pred CCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCCCCCCceeEEEEE-------CCeEEEeccccccccccccccccc
Q 007468 257 EVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMPPGPRAGFSMCVH-------KKRALLFGGVVDMEMKGDVIMSLF 329 (602)
Q Consensus 257 ~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~-------~~~lyv~GG~~~~~~~~~~~~~~~ 329 (602)
. +.+||. ....++..-..|.+++- ...|+..||-..
T Consensus 324 ~----------------~~Iwd~---------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~------------ 366 (484)
T KOG0305|consen 324 V----------------VFIWDG---------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA------------ 366 (484)
T ss_pred c----------------eEeccC---------CCccccEEEeccceeeeEeeeCCCccCceEEcCCCc------------
Q ss_pred cCeeEEEECCCCc
Q 007468 330 LNELYGFQLDNHR 342 (602)
Q Consensus 330 ~ndv~~yd~~t~~ 342 (602)
-..|.++|+.+..
T Consensus 367 D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 367 DRCIKFWNTNTGA 379 (484)
T ss_pred ccEEEEEEcCCCc
No 213
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=30.04 E-value=35 Score=38.28 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=12.7
Q ss_pred CCEEEEEcceecCCCCceeeCcEEEEEcCCC
Q 007468 81 ETELILYGGEFYNGNKTYVYGDLYRYDVEKQ 111 (602)
Q Consensus 81 ~~~iyv~GG~~~~g~~~~~~~dv~~yd~~~~ 111 (602)
++.+++--|..+++-.. -....+.+||...
T Consensus 270 gd~vl~s~GiRYn~YCS-n~~RT~l~dp~~e 299 (1001)
T COG5406 270 GDVVLLSIGIRYNGYCS-NMSRTILTDPDSE 299 (1001)
T ss_pred CceEEEEeeeeeccccc-cccceEEeCCchH
Confidence 34444444543333111 1234456666543
No 214
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.66 E-value=9.7e+02 Score=28.07 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=30.5
Q ss_pred eeeEEEEECCE-EEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE------CCEEEEEcCc
Q 007468 126 SAHQAVSWKNY-LYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY------KHKIIVFGGF 198 (602)
Q Consensus 126 ~~hs~~~~~~~-iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~------~~~Lyv~GG~ 198 (602)
+-+++..+.+. ..|.|+.+ ..+.+||+.+..--. .+..|-.+++ +++-+|.||.
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~-----------Gel~vfdlaS~~l~E--------ti~AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKN-----------GELQVFDLASASLVE--------TIRAHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred cEEEEEecCCCceEEEeccC-----------CceEEEEeehhhhhh--------hhhccccceeeeeecCCCCceEEecC
Confidence 66777777554 44555542 357788886653211 1113433333 5667777775
Q ss_pred cC
Q 007468 199 YD 200 (602)
Q Consensus 199 ~~ 200 (602)
+.
T Consensus 475 Dk 476 (888)
T KOG0306|consen 475 DK 476 (888)
T ss_pred Cc
Confidence 43
No 215
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=29.58 E-value=41 Score=28.84 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=21.9
Q ss_pred cccchhhhHHHHHHHHHHHHcCCCC
Q 007468 569 EGKNVRRKEKRARIEQIRANLGLSD 593 (602)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (602)
..|+++|++|..++++|++-.|+..
T Consensus 17 rlK~lK~~Ei~~kl~kik~~~G~~~ 41 (101)
T PF05178_consen 17 RLKNLKRKEIEEKLEKIKEVAGLED 41 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5567899999999999999999854
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.54 E-value=1.1e+03 Score=28.84 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=43.3
Q ss_pred ceEEEEECCCCceEEeccCCCCCCCCCc-cc--ee-EEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCe
Q 007468 209 NDLYVFDLDQFKWQEIKPRFGSMWPSPR-SG--FQ-FFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWE 283 (602)
Q Consensus 209 ~~v~~yd~~t~~W~~v~~~~~~~~P~~R-~~--~~-~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~ 283 (602)
.+|+.+|+... ....... +..++ +| ++ +.++ .--|+..|+. .. +-+|+...+.
T Consensus 1279 G~I~~~DlR~~--~~e~~~~---iv~~~~yGs~lTal~VH~hapiiAsGs~-q~----------------ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1279 GDIQLLDLRMS--SKETFLT---IVAHWEYGSALTALTVHEHAPIIASGSA-QL----------------IKIYSLSGEQ 1336 (1387)
T ss_pred CeEEEEecccC--cccccce---eeeccccCccceeeeeccCCCeeeecCc-ce----------------EEEEecChhh
Confidence 57888888764 2222110 11222 23 33 3444 4567777765 32 4556654443
Q ss_pred eEEeecCCCCCCCCcee--EEEEECCeEEEeccccc
Q 007468 284 WSKVKKIGMPPGPRAGF--SMCVHKKRALLFGGVVD 317 (602)
Q Consensus 284 W~~l~~~g~~P~~R~~~--s~~~~~~~lyv~GG~~~ 317 (602)
-..+...+..-..|.++ +++++..++.+.-|..+
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 33333222222344443 55667888888777655
No 217
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.06 E-value=6.3e+02 Score=25.74 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred EEEECC--EEEEEcCccCCCCCeeeeceEEEEECCCCc--eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCC
Q 007468 185 MVLYKH--KIIVFGGFYDTLREVRYYNDLYVFDLDQFK--WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVST 260 (602)
Q Consensus 185 ~~~~~~--~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~ 260 (602)
.+++++ .++++|-. ...+-..|+.+.. |+.+ ...|.-+++.++++. .|+|-+++.
T Consensus 16 LVV~~dskT~v~igSH---------s~~~~avd~~sG~~~We~i--------lg~RiE~sa~vvgdf-VV~GCy~g~--- 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH---------SGIVIAVDPQSGNLIWEAI--------LGVRIECSAIVVGDF-VVLGCYSGG--- 74 (354)
T ss_pred EEEecCCceEEEEecC---------CceEEEecCCCCcEEeehh--------hCceeeeeeEEECCE-EEEEEccCc---
Q ss_pred ccCCCCCCceeeeEEEEeCCCC--eeEEeecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEEC
Q 007468 261 DKNQSEKGIIHSDLWSLDPRTW--EWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQL 338 (602)
Q Consensus 261 ~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~ 338 (602)
+|.++..+. -|..+.-. .-.....+...++-||+---... +|++|+
T Consensus 75 -------------lYfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~glIycgshd~~---------------~yalD~ 122 (354)
T KOG4649|consen 75 -------------LYFLCVKTGSQIWNFVILE----TVKVRAQCDFDGGLIYCGSHDGN---------------FYALDP 122 (354)
T ss_pred -------------EEEEEecchhheeeeeehh----hhccceEEcCCCceEEEecCCCc---------------EEEecc
Q ss_pred CC
Q 007468 339 DN 340 (602)
Q Consensus 339 ~t 340 (602)
.+
T Consensus 123 ~~ 124 (354)
T KOG4649|consen 123 KT 124 (354)
T ss_pred cc
No 218
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=28.48 E-value=7.8e+02 Score=27.62 Aligned_cols=90 Identities=17% Similarity=0.345 Sum_probs=48.7
Q ss_pred cCeEEEEECCCCcEEEcccCCCCCCCcc--cEEEEE--CCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCC
Q 007468 155 YKDFWMLDLKTNQWEQLNLKGCPSPRSG--HRMVLY--KHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGS 230 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~~~~~~p~~R~~--h~~~~~--~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~ 230 (602)
-..++.+++...+-. + |..+.+ |..+.. +..+-|+=|+-. ..+-+||+.-+.-..+..-
T Consensus 250 Eq~Lyll~t~g~s~~-V-----~L~k~GPVhdv~W~~s~~EF~VvyGfMP--------Akvtifnlr~~~v~df~eg--- 312 (566)
T KOG2315|consen 250 EQTLYLLATQGESVS-V-----PLLKEGPVHDVTWSPSGREFAVVYGFMP--------AKVTIFNLRGKPVFDFPEG--- 312 (566)
T ss_pred cceEEEEEecCceEE-E-----ecCCCCCceEEEECCCCCEEEEEEeccc--------ceEEEEcCCCCEeEeCCCC---
Confidence 356777777744322 1 122222 333322 345666666643 4677888877644443332
Q ss_pred CCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC
Q 007468 231 MWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (602)
Q Consensus 231 ~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (602)
||- .+.+ .+.|.++-|++. ...+|.++|..+
T Consensus 313 ----pRN---~~~fnp~g~ii~lAGFGN-------------L~G~mEvwDv~n 345 (566)
T KOG2315|consen 313 ----PRN---TAFFNPHGNIILLAGFGN-------------LPGDMEVWDVPN 345 (566)
T ss_pred ----Ccc---ceEECCCCCEEEEeecCC-------------CCCceEEEeccc
Confidence 332 1222 677888888753 456788888654
No 219
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=28.44 E-value=27 Score=40.76 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=5.7
Q ss_pred ChhHHHHhcccc
Q 007468 560 GDAVAIIKGEGK 571 (602)
Q Consensus 560 ~~~~~~~~~~~~ 571 (602)
.++..-++|+++
T Consensus 106 p~~~~~~~~e~~ 117 (895)
T KOG2076|consen 106 PEGLKQFKGEGE 117 (895)
T ss_pred Cchhhhhhhhhe
Confidence 344455555444
No 220
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=28.15 E-value=33 Score=42.84 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=5.9
Q ss_pred EEEEeceEEec
Q 007468 466 LYVYGGMMEIN 476 (602)
Q Consensus 466 lyv~GG~~e~g 476 (602)
.|-+-|.-+.+
T Consensus 115 ~y~~~g~~~~~ 125 (2849)
T PTZ00415 115 FYPIHGKAEIG 125 (2849)
T ss_pred eeeccchhhcC
Confidence 45555655554
No 221
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=26.89 E-value=41 Score=37.02 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=6.6
Q ss_pred eecCeEEEEeceE
Q 007468 461 VGKDTLYVYGGMM 473 (602)
Q Consensus 461 v~~~~lyv~GG~~ 473 (602)
...++-|.|-++.
T Consensus 400 lk~g~~~tFs~i~ 412 (615)
T KOG0526|consen 400 LKSGTSYTFSNIS 412 (615)
T ss_pred EcCCCeeeecccC
Confidence 3444555555553
No 222
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=26.53 E-value=8.5e+02 Score=28.30 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=9.5
Q ss_pred ECCeEEEecccc
Q 007468 305 HKKRALLFGGVV 316 (602)
Q Consensus 305 ~~~~lyv~GG~~ 316 (602)
..+.+++.||.+
T Consensus 629 ~dg~vLasgg~D 640 (707)
T KOG0263|consen 629 RDGNVLASGGAD 640 (707)
T ss_pred cCCCEEEecCCC
Confidence 378899999875
No 223
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.37 E-value=8e+02 Score=27.25 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEE-eccCCCCCCCCCccceeEEEe--CCEEEEEcCc
Q 007468 178 SPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQE-IKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGY 254 (602)
Q Consensus 178 ~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~-v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~ 254 (602)
.|..+-+++..+..|+|-=|++ ..++.||+.+..-+. +... .|.+ .+.+ .+.+++.|-.
T Consensus 209 AP~~gicfspsne~l~vsVG~D---------kki~~yD~~s~~s~~~l~y~------~Pls---tvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYD---------KKINIYDIRSQASTDRLTYS------HPLS---TVAFSECGTYLCAGNS 270 (673)
T ss_pred CCcCcceecCCccceEEEeccc---------ceEEEeecccccccceeeec------CCcc---eeeecCCceEEEeecC
Confidence 4555666666788888888864 468899987543222 2221 2222 2333 5666666666
Q ss_pred cCC
Q 007468 255 SKE 257 (602)
Q Consensus 255 ~~~ 257 (602)
.+.
T Consensus 271 ~G~ 273 (673)
T KOG4378|consen 271 KGE 273 (673)
T ss_pred Cce
Confidence 555
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.53 E-value=8e+02 Score=26.29 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=47.9
Q ss_pred ecCeEEEEECCCCcEEEcccCC-CCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCC
Q 007468 154 HYKDFWMLDLKTNQWEQLNLKG-CPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMW 232 (602)
Q Consensus 154 ~~~dv~~yd~~t~~W~~~~~~~-~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~ 232 (602)
.+..|-.||+...+= .+.... +-.+.+..+.+.-++.|| +|- +..++..||+.+..---.... +..
T Consensus 224 ~~hqvR~YDt~~qRR-PV~~fd~~E~~is~~~l~p~gn~Iy-~gn---------~~g~l~~FD~r~~kl~g~~~k--g~t 290 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRR-PVAQFDFLENPISSTGLTPSGNFIY-TGN---------TKGQLAKFDLRGGKLLGCGLK--GIT 290 (412)
T ss_pred cceeEEEecCcccCc-ceeEeccccCcceeeeecCCCcEEE-Eec---------ccchhheecccCceeeccccC--Ccc
Confidence 356788999986541 111100 122233222222244444 443 246788899887643222111 111
Q ss_pred CCCccceeEEEe-CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCC
Q 007468 233 PSPRSGFQFFVY-QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRT 281 (602)
Q Consensus 233 P~~R~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t 281 (602)
-..|+ ...+ +..+...+|.+-. +-+||..+
T Consensus 291 Gsirs---ih~hp~~~~las~GLDRy----------------vRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRS---IHCHPTHPVLASCGLDRY----------------VRIHDIKT 321 (412)
T ss_pred CCcce---EEEcCCCceEEeecccee----------------EEEeeccc
Confidence 22332 2233 4467888887654 66788766
No 225
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=24.22 E-value=2.7e+02 Score=29.30 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=52.3
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCceEEeccCCCCCCCCCc
Q 007468 157 DFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKWQEIKPRFGSMWPSPR 236 (602)
Q Consensus 157 dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W~~v~~~~~~~~P~~R 236 (602)
.+-++++.|....+. +..-+.|-+++.++++++|-|..+ +.+-.||+..+.--++-.- .--.-
T Consensus 341 TikvW~~st~efvRt----l~gHkRGIAClQYr~rlvVSGSSD---------ntIRlwdi~~G~cLRvLeG---HEeLv- 403 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRT----LNGHKRGIACLQYRDRLVVSGSSD---------NTIRLWDIECGACLRVLEG---HEELV- 403 (499)
T ss_pred eEEEEeccceeeehh----hhcccccceehhccCeEEEecCCC---------ceEEEEeccccHHHHHHhc---hHHhh-
Confidence 455666666655433 345567778888999999987753 5778888877654332111 00011
Q ss_pred cceeEEEeCCEEEEEcCccCC
Q 007468 237 SGFQFFVYQDEVFLYGGYSKE 257 (602)
Q Consensus 237 ~~~~~~~~~~~Iyv~GG~~~~ 257 (602)
-++.++++-+|-|||++.
T Consensus 404 ---RciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 404 ---RCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred ---hheeecCceeeeccccce
Confidence 246678999999999887
No 226
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=24.16 E-value=42 Score=37.84 Aligned_cols=14 Identities=7% Similarity=-0.244 Sum_probs=7.6
Q ss_pred CCceeeEEEEECCE
Q 007468 123 PPRSAHQAVSWKNY 136 (602)
Q Consensus 123 ~~R~~hs~~~~~~~ 136 (602)
..|++++..+.+-+
T Consensus 399 mnrhHyslyvh~Cr 412 (952)
T KOG1834|consen 399 MNRHHYSLYVHGCR 412 (952)
T ss_pred cccceeEEEEeccE
Confidence 44566555555544
No 227
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=24.09 E-value=67 Score=33.68 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.7
Q ss_pred EEeceE
Q 007468 468 VYGGMM 473 (602)
Q Consensus 468 v~GG~~ 473 (602)
+.+|+.
T Consensus 64 ~~~~i~ 69 (324)
T PF05285_consen 64 VADGIP 69 (324)
T ss_pred cccCCC
Confidence 345543
No 228
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=23.86 E-value=8.3e+02 Score=25.33 Aligned_cols=78 Identities=14% Similarity=0.322 Sum_probs=44.7
Q ss_pred CCCCceEEeccCCCCCCCCCccceeEEEe--CCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCCCC
Q 007468 216 LDQFKWQEIKPRFGSMWPSPRSGFQFFVY--QDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIGMP 293 (602)
Q Consensus 216 ~~t~~W~~v~~~~~~~~P~~R~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 293 (602)
.....|+.+.-. |-+++ +.+. .+.+|++-++.+. ....+ +..+.
T Consensus 185 ~~~~ew~~l~FS-----~dGK~---iLlsT~~s~~~~lDAf~G~------------~~~tf----------s~~~~---- 230 (311)
T KOG1446|consen 185 NDEAEWTDLEFS-----PDGKS---ILLSTNASFIYLLDAFDGT------------VKSTF----------SGYPN---- 230 (311)
T ss_pred CCccceeeeEEc-----CCCCE---EEEEeCCCcEEEEEccCCc------------EeeeE----------eeccC----
Confidence 446678888877 44433 3222 6778888777654 11111 11111
Q ss_pred CCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 294 PGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 294 P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
..+.-..+++.-+.-||++|..+ ..|++|+..+.
T Consensus 231 -~~~~~~~a~ftPds~Fvl~gs~d-------------g~i~vw~~~tg 264 (311)
T KOG1446|consen 231 -AGNLPLSATFTPDSKFVLSGSDD-------------GTIHVWNLETG 264 (311)
T ss_pred -CCCcceeEEECCCCcEEEEecCC-------------CcEEEEEcCCC
Confidence 12222466666777778888764 45899998664
No 229
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=23.30 E-value=37 Score=37.40 Aligned_cols=14 Identities=7% Similarity=0.271 Sum_probs=7.0
Q ss_pred hhcccCCCCccEEeecC
Q 007468 486 YSLNLSKLDEWKCIIPA 502 (602)
Q Consensus 486 ~~ldl~~~~~W~~~~~~ 502 (602)
|.++- |.|+--...
T Consensus 192 WAV~K---d~ye~ta~~ 205 (678)
T KOG0127|consen 192 WAVDK---DTYEDTAHE 205 (678)
T ss_pred eeccc---ccccccchh
Confidence 55554 556554433
No 230
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=22.95 E-value=79 Score=36.46 Aligned_cols=13 Identities=15% Similarity=0.550 Sum_probs=5.8
Q ss_pred hhhHHHHHHHHHH
Q 007468 574 RRKEKRARIEQIR 586 (602)
Q Consensus 574 ~~~~~~~~~~~~~ 586 (602)
.||-+|.++..++
T Consensus 444 ~kkq~ke~~~r~k 456 (763)
T TIGR00993 444 QKKQWREELKRMK 456 (763)
T ss_pred HHHHHHHHHHHHH
Confidence 3445544444433
No 231
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=22.95 E-value=1.2e+02 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=19.6
Q ss_pred CCCCChhHHHHhcccc------chhhhHHHHHHHHHHHHc
Q 007468 556 SLQMGDAVAIIKGEGK------NVRRKEKRARIEQIRANL 589 (602)
Q Consensus 556 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 589 (602)
-+...|+|+...--.+ .+.|..||++...+|+.+
T Consensus 55 k~gkNP~VdTsfLpDk~Re~~E~~~Re~LRkE~~~~Qe~v 94 (239)
T PF04921_consen 55 KLGKNPTVDTSFLPDKEREEEEAQEREELRKEWLAKQEAV 94 (239)
T ss_pred cccCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666654322222 235777888887777764
No 232
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=22.73 E-value=28 Score=40.38 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEeccc
Q 007468 309 ALLFGGV 315 (602)
Q Consensus 309 lyv~GG~ 315 (602)
+|-||.+
T Consensus 345 ~~~~~~~ 351 (713)
T PF03344_consen 345 WYNFGCH 351 (713)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4555543
No 233
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=22.67 E-value=69 Score=40.35 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.8
Q ss_pred CCeEEEeccc
Q 007468 306 KKRALLFGGV 315 (602)
Q Consensus 306 ~~~lyv~GG~ 315 (602)
+|.+|..|+.
T Consensus 71 ~g~~y~~~~~ 80 (2849)
T PTZ00415 71 NGGIYNLGDA 80 (2849)
T ss_pred CCCEEeccCc
Confidence 4445555443
No 234
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=22.10 E-value=9.8e+02 Score=26.07 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=57.4
Q ss_pred eceEEEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEe
Q 007468 208 YNDLYVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKV 287 (602)
Q Consensus 208 ~~~v~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 287 (602)
..++|.+|+.+..=.++.... ..-...+....+..|+..-...+. .++|+|++....=+++
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~-----gi~~~Ps~spdG~~ivf~Sdr~G~--------------p~I~~~~~~g~~~~ri 321 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGF-----GINTSPSWSPDGSKIVFTSDRGGR--------------PQIYLYDLEGSQVTRL 321 (425)
T ss_pred CccEEEEcCCCCcceecccCC-----ccccCccCCCCCCEEEEEeCCCCC--------------cceEEECCCCCceeEe
Confidence 358999999887644444331 111122233335555555333332 3799999988877777
Q ss_pred ecCCCCCCCCceeEEEEECCeEEEeccccccccccccccccccCeeEEEECCCCc-eEEeEe
Q 007468 288 KKIGMPPGPRAGFSMCVHKKRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNHR-WYPLEL 348 (602)
Q Consensus 288 ~~~g~~P~~R~~~s~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~~-W~~l~~ 348 (602)
...+. ... +-...-+++.++|=+... +. -+|..+++.+.. |..+..
T Consensus 322 T~~~~---~~~-~p~~SpdG~~i~~~~~~~---------g~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 322 TFSGG---GNS-NPVWSPDGDKIVFESSSG---------GQ--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred eccCC---CCc-CccCCCCCCEEEEEeccC---------Cc--eeeEEeccCCCCcEEEccc
Confidence 65421 111 111122333333333321 01 568899988776 887776
No 235
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.72 E-value=9.2e+02 Score=25.08 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=58.5
Q ss_pred eeCcEEEEEcCCCc----EEEecCCCCCCCceeeEEEE-E---CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEE
Q 007468 99 VYGDLYRYDVEKQE----WKVISSPNSPPPRSAHQAVS-W---KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQ 170 (602)
Q Consensus 99 ~~~dv~~yd~~~~~----W~~l~~~~~P~~R~~hs~~~-~---~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 170 (602)
-++.|..||...++ |+.--. -|..-++-.+-. + ++.||+.=+- +. ..--+|..|..+..-+.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih--~~~~WaGEVSdIlYdP~~D~LLlAR~D-Gh-------~nLGvy~ldr~~g~~~~ 145 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIH--DKTKWAGEVSDILYDPYEDRLLLARAD-GH-------ANLGVYSLDRRTGKAEK 145 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccC--CccccccchhheeeCCCcCEEEEEecC-Cc-------ceeeeEEEcccCCceee
Confidence 56789999999886 553211 122222222212 2 4667766432 11 23468999999999888
Q ss_pred cccCCCCCCCcccEEEEECCEEEEEcCccCCCCCeeeeceEEEEECCCCce
Q 007468 171 LNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYYNDLYVFDLDQFKW 221 (602)
Q Consensus 171 ~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~~~~~~~~~~v~~yd~~t~~W 221 (602)
+.. .|++ -.+.+.+..+|-+ ... ..-.+.+.+||+.+++|
T Consensus 146 L~~--~ps~---KG~~~~D~a~F~i---~~~---~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 146 LSS--NPSL---KGTLVHDYACFGI---NNF---HKGVSGIHCLDLISGKW 185 (339)
T ss_pred ccC--CCCc---CceEeeeeEEEec---ccc---ccCCceEEEEEccCCeE
Confidence 876 3333 2234444444422 221 11267899999999999
No 236
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=21.51 E-value=1.5e+03 Score=28.01 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=56.8
Q ss_pred cCeEEEEECCCCcEEEcccCCC--CCCCcccEEEEEC----C--EEEEEcCccCCCCCeeeeceEEEEECCC-CceEEec
Q 007468 155 YKDFWMLDLKTNQWEQLNLKGC--PSPRSGHRMVLYK----H--KIIVFGGFYDTLREVRYYNDLYVFDLDQ-FKWQEIK 225 (602)
Q Consensus 155 ~~dv~~yd~~t~~W~~~~~~~~--p~~R~~h~~~~~~----~--~Lyv~GG~~~~~~~~~~~~~v~~yd~~t-~~W~~v~ 225 (602)
...++.|+...+.|..+..... .....|+++|+.+ + - .++|-=....+...--..||+|=-.. ..|..-.
T Consensus 295 ~G~v~if~~~~~~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tD-LLVGAP~y~~~~~~e~GrVYVy~~~~~~~~~~~~ 373 (1030)
T KOG3637|consen 295 GGKVYIFQLSGKSLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTD-LLVGAPLYFERDRYEVGRVYVYLNGGLGLFPEQI 373 (1030)
T ss_pred ccEEEEEeccccccceeeeeeeeeehhhcCeeEEEEEcCCCCCcc-eEEecCccccCCCCcceEEEEEEecCCCCcccce
Confidence 4789999999888887765221 5567777777762 1 2 33442111111111234678874443 3222222
Q ss_pred cCCCCCCCCCccceeEEEeC---------------------CEEEEEcCccCC
Q 007468 226 PRFGSMWPSPRSGFQFFVYQ---------------------DEVFLYGGYSKE 257 (602)
Q Consensus 226 ~~~~~~~P~~R~~~~~~~~~---------------------~~Iyv~GG~~~~ 257 (602)
.......|..|+|.+++.++ |.+|||=|....
T Consensus 374 ~L~~~~~~~~RFG~Ala~LGDlN~DG~nDVAVGAP~eg~~~GaVYIy~Gs~~G 426 (1030)
T KOG3637|consen 374 TLRGPGGPSGRFGSALAALGDLNQDGYNDVAVGAPFEGDNQGAVYIYHGSKGG 426 (1030)
T ss_pred eEecCCCcccchhhhhhcccCcccCCCCceEEeCCcCCCCCceEEEEcCCCCC
Confidence 11111126779999888652 578998887654
No 237
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=21.39 E-value=72 Score=26.69 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHc
Q 007468 573 VRRKEKRARIEQIRANL 589 (602)
Q Consensus 573 ~~~~~~~~~~~~~~~~~ 589 (602)
+....|+++|++|+++|
T Consensus 2 k~~s~I~~eIekLqe~l 18 (92)
T PF07820_consen 2 KSSSKIREEIEKLQEQL 18 (92)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 34667999999999987
No 238
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=21.38 E-value=54 Score=36.83 Aligned_cols=7 Identities=0% Similarity=0.434 Sum_probs=3.1
Q ss_pred eEEEEec
Q 007468 465 TLYVYGG 471 (602)
Q Consensus 465 ~lyv~GG 471 (602)
.+|||--
T Consensus 855 ~vFi~~d 861 (1001)
T COG5406 855 VVFILRD 861 (1001)
T ss_pred EEEEecc
Confidence 3444443
No 239
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.24 E-value=1.4e+03 Score=26.91 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=33.7
Q ss_pred CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE-CCEEEEEcCccCCCCCeeeeceEE
Q 007468 134 KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY-KHKIIVFGGFYDTLREVRYYNDLY 212 (602)
Q Consensus 134 ~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~-~~~Lyv~GG~~~~~~~~~~~~~v~ 212 (602)
.+.+.++.|.+ ..+-+++..+.+-.+- ++.. +-+++..+ +++.+|.|+.+ ..+.
T Consensus 383 ~d~~~~~Sga~-----------~SikiWn~~t~kciRT----i~~~-y~l~~~Fvpgd~~Iv~G~k~---------Gel~ 437 (888)
T KOG0306|consen 383 SDSILLASGAG-----------ESIKIWNRDTLKCIRT----ITCG-YILASKFVPGDRYIVLGTKN---------GELQ 437 (888)
T ss_pred cCceeeeecCC-----------CcEEEEEccCcceeEE----eccc-cEEEEEecCCCceEEEeccC---------CceE
Confidence 55666666543 2355666665543322 2223 66666666 45566666653 3577
Q ss_pred EEECCC
Q 007468 213 VFDLDQ 218 (602)
Q Consensus 213 ~yd~~t 218 (602)
+||+.+
T Consensus 438 vfdlaS 443 (888)
T KOG0306|consen 438 VFDLAS 443 (888)
T ss_pred EEEeeh
Confidence 787755
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.97 E-value=1e+03 Score=25.45 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=75.7
Q ss_pred CEEEEEeCccCCCCCCcceecCeEEEEECCC--CcEEEcccCCCCCCCcccEEEEECCEEEEEcCccCC-CCCeeeeceE
Q 007468 135 NYLYIFGGEFTSPNQERFHHYKDFWMLDLKT--NQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDT-LREVRYYNDL 211 (602)
Q Consensus 135 ~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t--~~W~~~~~~~~p~~R~~h~~~~~~~~Lyv~GG~~~~-~~~~~~~~~v 211 (602)
-.|+.+||.-. .+.+-+||+.. ..|+--.+ |.-+-+...-+|.--|-.+-|.... ......+..|
T Consensus 161 p~Iva~GGke~---------~n~lkiwdle~~~qiw~aKNv---pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 161 PYIVATGGKEN---------INELKIWDLEQSKQIWSAKNV---PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceEecCchhc---------ccceeeeecccceeeeeccCC---CCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 46888899642 24455555544 45765433 4444444444443322222221100 0001235788
Q ss_pred EEEECCCCceEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEEEEeCCCCeeEEeecCC
Q 007468 212 YVFDLDQFKWQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLWSLDPRTWEWSKVKKIG 291 (602)
Q Consensus 212 ~~yd~~t~~W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 291 (602)
-.||+...+ +.+...+ ..-.+.+..+.+. .+..+++|-+.+ ++..||+.+..--...-.|
T Consensus 229 R~YDt~~qR-RPV~~fd--~~E~~is~~~l~p-~gn~Iy~gn~~g----------------~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 229 RLYDTRHQR-RPVAQFD--FLENPISSTGLTP-SGNFIYTGNTKG----------------QLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred EEecCcccC-cceeEec--cccCcceeeeecC-CCcEEEEecccc----------------hhheecccCceeeccccCC
Confidence 999987543 1222110 0123333322222 344444454443 4888998776543332222
Q ss_pred CCCCCCceeEEEEEC-CeEEEeccccccccccccccccccCeeEEEECCCC
Q 007468 292 MPPGPRAGFSMCVHK-KRALLFGGVVDMEMKGDVIMSLFLNELYGFQLDNH 341 (602)
Q Consensus 292 ~~P~~R~~~s~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~ndv~~yd~~t~ 341 (602)
..-.. .++..+. ..++..+|.+. -|-+||+.++
T Consensus 289 ~tGsi---rsih~hp~~~~las~GLDR--------------yvRIhD~ktr 322 (412)
T KOG3881|consen 289 ITGSI---RSIHCHPTHPVLASCGLDR--------------YVRIHDIKTR 322 (412)
T ss_pred ccCCc---ceEEEcCCCceEEeeccce--------------eEEEeecccc
Confidence 11112 2344454 46888888753 3778888874
No 241
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=20.29 E-value=1e+03 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=22.3
Q ss_pred EEEcCCCcEEEecCCCCCCCcee--eEEEEE-CCEEEEEe
Q 007468 105 RYDVEKQEWKVISSPNSPPPRSA--HQAVSW-KNYLYIFG 141 (602)
Q Consensus 105 ~yd~~~~~W~~l~~~~~P~~R~~--hs~~~~-~~~iyV~G 141 (602)
.+.|.-+.|..+.....-.-.++ |+++.. ++.||..|
T Consensus 90 ~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG 129 (476)
T COG5184 90 VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWG 129 (476)
T ss_pred ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEec
Confidence 56777776664332222223444 777766 57799998
No 242
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=20.09 E-value=1.2e+03 Score=25.98 Aligned_cols=142 Identities=11% Similarity=0.090 Sum_probs=70.2
Q ss_pred ceeeEEEEE--CCEEEEEeCccCCCCCCcceecCeEEEEECCCCcEEEcccCCCCCCCcccEEEEE--CCEEEEEcCccC
Q 007468 125 RSAHQAVSW--KNYLYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLY--KHKIIVFGGFYD 200 (602)
Q Consensus 125 R~~hs~~~~--~~~iyV~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~~~~~~~p~~R~~h~~~~~--~~~Lyv~GG~~~ 200 (602)
++..+++++ ++..+++||... .+++|.+....-..... ....|.--+.+.+ ++..++.|-.
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dg-----------kvhvysl~g~~l~ee~~--~~~h~a~iT~vaySpd~~yla~~Da-- 507 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDG-----------KVHVYSLSGDELKEEAK--LLEHRAAITDVAYSPDGAYLAAGDA-- 507 (603)
T ss_pred ccccceEEEcCCCCEEEEecccc-----------eEEEEEecCCcccceee--eecccCCceEEEECCCCcEEEEecc--
Confidence 333334443 455666777543 37777776654322211 1233444445555 4455554432
Q ss_pred CCCCeeeeceEEEEECCCCc-----eEEeccCCCCCCCCCccceeEEEeCCEEEEEcCccCCCCCccCCCCCCceeeeEE
Q 007468 201 TLREVRYYNDLYVFDLDQFK-----WQEIKPRFGSMWPSPRSGFQFFVYQDEVFLYGGYSKEVSTDKNQSEKGIIHSDLW 275 (602)
Q Consensus 201 ~~~~~~~~~~v~~yd~~t~~-----W~~v~~~~~~~~P~~R~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~dv~ 275 (602)
...+..||..++. |.. ..+|..+-+-.-++.++..|+.+.. ++
T Consensus 508 -------~rkvv~yd~~s~~~~~~~w~F---------HtakI~~~aWsP~n~~vATGSlDt~----------------Vi 555 (603)
T KOG0318|consen 508 -------SRKVVLYDVASREVKTNRWAF---------HTAKINCVAWSPNNKLVATGSLDTN----------------VI 555 (603)
T ss_pred -------CCcEEEEEcccCceecceeee---------eeeeEEEEEeCCCceEEEeccccce----------------EE
Confidence 3567777776543 332 1233332222228888888887765 78
Q ss_pred EEeCCCCeeEEeecCCCCCCCCceeEEEEECCeEEEecccc
Q 007468 276 SLDPRTWEWSKVKKIGMPPGPRAGFSMCVHKKRALLFGGVV 316 (602)
Q Consensus 276 ~yd~~t~~W~~l~~~g~~P~~R~~~s~~~~~~~lyv~GG~~ 316 (602)
+|+.....=. +...+..+.. -.+++.++..-+|--|.+
T Consensus 556 iysv~kP~~~-i~iknAH~~g--Vn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 556 IYSVKKPAKH-IIIKNAHLGG--VNSVAWLDESTVVSSGQD 593 (603)
T ss_pred EEEccChhhh-eEeccccccC--ceeEEEecCceEEeccCc
Confidence 8876543211 2222222222 334455566666655553
Done!